Psyllid ID: psy15864

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550---
Protein Sequence
MDSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLYKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRRAEKKRHAARVEGQEEVKGEDNFGMEGEDGKYISRVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRRAEKKRHAAKVEGQEEVKGEDNFGMEGEDGKYI
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHccccccccccccccEEEEEEEEEEHHHcccccccccHHHHHHHHHHccccEEEHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHcHcEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccEEEEHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHccccccccccccccHHcccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHEEcccEEEcccccccccccccccc
Coil and Loop (DISEMBL)
mdsstkhqigtfteptpldwkKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKknnnnnnnnnnnnnnnnnnnnnnnnneekgtflykmAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAlyfipesphwlisQGRMQEASASLCwlrgwvtpdkVQTELSQITKAIEESELKRlgkdgqrrpnyrmyMRRTFLLPYAIVTSLFfigqfggmttlQTYAVGIFesihapldpYFATLLLGVAELGGALLCVVLIHYtgkrplalistggsAACFIVVAVYAQFHlsygwdsplvPTVFLVLAAFLTHICIRLlpwmligevfpnniratasgasgsssYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFvmpetegrtlRDIEEHFADKGKTFVTNIRRAEKKRHAArvegqeevkgednfgmegedgkyISRVVGTLYMYFVmpetegrtlRDIEEHFADKGKTFVTNIRRAEKKRHAakvegqeevkgednfgmegedgkyi
Flexible Loop (DISEMBL)
mdsstkhqigtfteptpldwkkakkkekkkkekkakkkekkkekkkkekkkkkkkkkkkkknnnnnnnnnnnnnnnnnnnNNNNNNEEKGTFLYKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAieeselkrlgkdgqrrpnyrMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRRAEKkrhaarvegqeevkgednfgmegedgkYISRVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRRAEKkrhaakvegqeevkgednfgmegedgkyi
Low Complexity Region (SEG)
MDSSTKHQIGTFTEPTPLDWkkakkkekkkkekkakkkekkkekkkkekkkkkkkkkkkkknnnnnnnnnnnnnnnnnnnnnnnnneekGTFLYKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFatlllgvaelggallcvvlIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATasgasgsssYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRRAEKKRHAARVEGQEEVKGEDNFGMEGEDGKYISRVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRRAEKKRHAAKVEGQEEVKGEDNFGMEGEDGKYI
Disordered region (IsUnstruct)
******************************************************************************************TFLYKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQI********************NYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNI******************************GKYISRVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTN***********************************
Disordered Region (DISOPRED)
**********TFTEPT**************************************************************NNNNNNNNEEKGTFLYKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQIT*******************NYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEH**********************************************SRVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNI**********************************
Disordered Region (DISEMBL)
*********GTFTEPTPLDWK****************************************NNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLYKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRR***************VKGEDNFGMEGEDGKYISRVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRR***************VKGEDNFGMEGEDGKYI
Disordered Region (DISPRO)
***********FTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLYKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKR******RRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGK**********************************EDGKYISRVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRRAEKKRHAAKVEGQEEVKGEDNFGMEGE*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSSTKHQIGTFTEPTPLDWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNNNNNNNNNNNNNNNEEKGTFLYKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRRAEKKRHAARVEGQEEVKGEDNFGMEGEDGKYISRVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRRAEKKRHAAKVEGQEEVKGEDNFGMEGEDGKYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	553	2.2.26 [Sep-21-2011]
B4KR05	863	Facilitated trehalose tra	N/A	N/A	0.589	0.377	0.283	6e-36
Q291H8	868	Facilitated trehalose tra	no	N/A	0.566	0.360	0.270	2e-35
B4GAP7	869	Facilitated trehalose tra	N/A	N/A	0.566	0.360	0.270	2e-35
B4LPX5	911	Facilitated trehalose tra	N/A	N/A	0.593	0.360	0.274	3e-35
B4P624	856	Facilitated trehalose tra	N/A	N/A	0.564	0.364	0.281	5e-35
B3MG58	866	Facilitated trehalose tra	N/A	N/A	0.594	0.379	0.263	5e-35
B4MYA4	872	Facilitated trehalose tra	N/A	N/A	0.584	0.370	0.275	6e-35
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.567	0.389	0.276	8e-35
A9ZSY3	505	Facilitated trehalose tra	N/A	N/A	0.593	0.649	0.278	2e-34
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.591	0.382	0.281	2e-34

>sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2

 Score =  152 bits (385), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 171/356 (48%), Gaps = 30/356 (8%)

Query: 105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFL---GSFLHWRSAAILNLLFPILALCAL 161
            Y+ E  QP +RG L     + T FG +  L     G+++ W   A L    P+  L  +
Sbjct: 519 VYLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGTYMDWSMLAFLGGTLPVPFLILM 575

Query: 162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQR 221
           + IPE+P W +S+GR + A  +L WLRG      V+ EL  + ++  ++       D Q 
Sbjct: 576 FLIPETPRWYVSRGREERARKALVWLRG--KEADVEPELKGLMRSQADA-------DRQA 626

Query: 222 RPNYRM-YMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLG 280
             N  +  ++R+ L P +I   L F  Q  G+  +  Y V IF+   + +D    T+++G
Sbjct: 627 TQNTMLELLKRSNLKPLSISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVG 686

Query: 281 VAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHL--SYGWDSPLVPTVF 338
           V       +  VLI   G++ L  +S   + A  + + V   F    S G D+  V   +
Sbjct: 687 VVNFMATFIATVLIDRAGRKILLYVS---NVAMILTLFVLGGFFYCKSTGMDTSNVG--W 741

Query: 339 LVLAAFLTHIC-----IRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML 393
           L L+ F+ +I         +PW+++GE+ P  IR +A+  + + ++   F V K +  M+
Sbjct: 742 LPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKSFQDMI 801

Query: 394 DTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGK--TFVTNIR 447
           D     G  + + AI  VG  ++ F +PET+G+TL DIE     + +  + V NI+
Sbjct: 802 DVMGAHGAFWMFGAICFVGLFFVIFYVPETQGKTLEDIERKMMGRVRRMSSVANIK 857

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Drosophila mojavensis (taxid: 7230)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 24/337 (7%)

Query: 105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFL---GSFLHWRSAAILNLLFPILALCAL 161
            Y+ E  QP +RG L     + T FG +  L     G+++ W   A L    P+  L  +
Sbjct: 524 VYLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILM 580

Query: 162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQR 221
           + IPE+P W +S+GR ++A  +L WLRG      V+ EL  + ++  ++       D Q 
Sbjct: 581 FLIPETPRWFVSRGREEKARKALSWLRG--KEADVEPELKGLMRSQADA-------DRQA 631

Query: 222 RPNYRM-YMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLG 280
             N  M  ++R  L P +I   L F  Q  G+  +  Y V IF+   + +D    T+++G
Sbjct: 632 TQNKMMELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVG 691

Query: 281 VAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLV 340
           +       +  +LI   G++ L  +S   + A  I + V   F         +    +L 
Sbjct: 692 IVNFMATFIATLLIDRAGRKILLYVS---NIAMIITLFVLGGFFYCKSHGQDVSQLGWLP 748

Query: 341 LAAFLTHIC-----IRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT 395
           L+ F+ +I         +PW+++GE+ P+ IR +A+  + + ++   F V K +  M+D 
Sbjct: 749 LSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVVTKTFQDMIDF 808

Query: 396 FHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIE 432
               G  + + +I  +G  ++   +PET+G+TL DIE
Sbjct: 809 MGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIE 845

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 24/337 (7%)

Query: 105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFL---GSFLHWRSAAILNLLFPILALCAL 161
            Y+ E  QP +RG L     + T FG +  L     G+++ W   A L    P+  L  +
Sbjct: 525 VYLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILM 581

Query: 162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQR 221
           + IPE+P W +S+GR ++A  +L WLRG      V+ EL  + ++  ++       D Q 
Sbjct: 582 FLIPETPRWFVSRGREEKARKALSWLRG--KEADVEPELKGLMRSQADA-------DRQA 632

Query: 222 RPNYRM-YMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLG 280
             N  M  ++R  L P +I   L F  Q  G+  +  Y V IF+   + +D    T+++G
Sbjct: 633 TQNKMMELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVG 692

Query: 281 VAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLV 340
           +       +  +LI   G++ L  +S   + A  I + V   F         +    +L 
Sbjct: 693 IVNFMATFIATLLIDRAGRKILLYVS---NIAMIITLFVLGGFFYCKSHGQDVSQLGWLP 749

Query: 341 LAAFLTHIC-----IRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT 395
           L+ F+ +I         +PW+++GE+ P+ IR +A+  + + ++   F V K +  M+D 
Sbjct: 750 LSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVVTKTFQDMIDF 809

Query: 396 FHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIE 432
               G  + + +I  +G  ++   +PET+G+TL DIE
Sbjct: 810 MGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIE 846

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2

 Score =  150 bits (379), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 169/354 (47%), Gaps = 26/354 (7%)

Query: 105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFL---GSFLHWRSAAILNLLFPILALCAL 161
            Y+ E  QP +RG L     + T FG +  L     G+++ W   A L    P+  L  +
Sbjct: 567 VYLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGTYMDWSMLAFLGASLPVPFLILM 623

Query: 162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQR 221
           + IPE+P W +S+GR + A  +L WLRG      V+ EL  + ++  ++       D Q 
Sbjct: 624 FLIPETPRWYVSRGREERARKALVWLRG--KEADVEPELKGLMRSQADA-------DRQA 674

Query: 222 RPNYRM-YMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLG 280
             N  +  ++R+ L P +I   L F  Q  G+  +  Y V IF+   + +D    T+++G
Sbjct: 675 TQNKMLELLKRSNLKPLSISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVG 734

Query: 281 VAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLV 340
           V       +  +LI   G++ L  +S         V+  +  +  S G D+  V   +L 
Sbjct: 735 VVNFAATFIATILIDRAGRKVLLYVSNVMMVLTLFVLGGFF-YCKSSGMDTSNVG--WLP 791

Query: 341 LAAFLTHIC-----IRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT 395
           L+ F+ +I         +PW+++GE+ P  IR +A+  + + ++   F V K +  M+D 
Sbjct: 792 LSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKSFQDMIDF 851

Query: 396 FHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGK--TFVTNIR 447
               G  + + AI  +G  ++ F +PET+G+TL DIE     + +  + V NI+
Sbjct: 852 MGAHGAFWMFGAICFIGLFFVIFYVPETQGKTLEDIERKMMGRVRRMSSVANIK 905

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila virilis (taxid: 7244)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score =  149 bits (376), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 159/338 (47%), Gaps = 26/338 (7%)

Query: 105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFL---GSFLHWRSAAILNLLFPILALCAL 161
            Y+ E  QP +RG L     + T FG +  L     GSF++W   A L    P+  L  +
Sbjct: 512 VYLGETVQPEVRGTLGL---LPTAFGNIGILVCFVAGSFMNWSMLAFLGAALPVPFLILM 568

Query: 162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQR 221
           + IPE+P W +S+GR + A  +L WLRG      V+ EL  + ++  ++       D Q 
Sbjct: 569 FLIPETPRWYVSRGREERARKALTWLRG--KEADVEPELKGLMRSQADA-------DRQA 619

Query: 222 RPNYRM-YMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLG 280
             N  +  ++R  L P +I   L F  QF G+  +  Y V IF+   + +D    T+++G
Sbjct: 620 TQNTMLELLKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNVCTIIVG 679

Query: 281 VAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA--VYAQFH---LSY-GWDSPLV 334
           V       + ++LI   G++ L   S         V+    Y + H   +S+ GW    +
Sbjct: 680 VVNFVATFIGILLIDRAGRKILLYASDIAMVLTLFVLGGFFYCKAHGPDVSHLGW----L 735

Query: 335 PTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD 394
           P    V+      +    +PW+++GE+ P  IR  A+  + S ++   F V K +  ++ 
Sbjct: 736 PLTCFVVYILGFSVGFGPIPWLMMGEILPAKIRGAAASVATSFNWTCTFVVTKTFQDLVG 795

Query: 395 TFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIE 432
           +    G  + + AI  VG  ++   +PET+G+TL DIE
Sbjct: 796 SLGAHGAFWLFGAICFVGLFFVILYVPETQGKTLEDIE 833

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

>sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2

 Score =  149 bits (376), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 164/353 (46%), Gaps = 24/353 (6%)

Query: 105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFL---GSFLHWRSAAILNLLFPILALCAL 161
            Y+ E  QP +RG L     + T FG +  L     G+++ W   A L    P+  L  +
Sbjct: 522 VYLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLVLM 578

Query: 162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQR 221
           + IPE+P W +S+GR + A  +L WLRG      V+ EL  + ++  +++     + G +
Sbjct: 579 FLIPETPRWFVSRGREERARKALSWLRG--KEADVEPELKGLMRSQADAD-----RQGTQ 631

Query: 222 RPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGV 281
                +  R  F  P +I   L F  Q  G+  +  Y V IF+   + +D    T+++GV
Sbjct: 632 NTMLELLKRSNFK-PLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNVCTIIVGV 690

Query: 282 AELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVL 341
                  +  +LI   G++ L  +S   + A  I + V   F         +    +L L
Sbjct: 691 VNFLATFIATLLIDRAGRKILLYVS---NIAMIITLFVLGGFFYCKAHGPDVSHLGWLPL 747

Query: 342 AAFLTHIC-----IRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF 396
           + F+ +I         +PW+++GE+ P  IR +A+  + + ++   F V K +  M+D  
Sbjct: 748 SCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKTFQDMIDVM 807

Query: 397 HLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGK--TFVTNIR 447
              G  + + AI  +G  ++   +PET+G+TL DIE     + +  + V NI+
Sbjct: 808 GAHGAFWLFGAICFIGLFFVILYVPETQGKTLEDIERKMMGRVRRMSSVANIK 860

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila ananassae (taxid: 7217)

>sp|B4MYA4|TRET1_DROWI Facilitated trehalose transporter Tret1 OS=Drosophila willistoni GN=Tret1 PE=3 SV=1

 Score =  149 bits (376), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 164/360 (45%), Gaps = 37/360 (10%)

Query: 105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFL---GSFLHWRSAAILNLLFPILALCAL 161
            Y+ E  QP +RG L     + T FG +  L     G+++ W   A L    P+  L  +
Sbjct: 527 VYLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILM 583

Query: 162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELK---RLGKD 218
           + IPE+P W +S+GR + A  +L WLRG               +A  E ELK   R   D
Sbjct: 584 FLIPETPRWYVSRGREERARKALSWLRG--------------KEADVEPELKGLLRSQAD 629

Query: 219 GQRRPNYRM---YMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFA 275
             R          ++R  L P +I   L F  Q  G+  +  Y V IF+   + +D    
Sbjct: 630 ADRSATQNTMLELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVQIFKDAGSTIDGNVC 689

Query: 276 TLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVP 335
           T+++G+       + ++LI   G++ L  +S   + A  I + V   F          V 
Sbjct: 690 TIIVGIVNFMATFIGIILIDRAGRKILLYVS---NVAMIITLFVLGGFFYCKDKAGIDVS 746

Query: 336 TV-FLVLAAFLTHIC-----IRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLY 389
            V +L L+ F+ +I         +PW+++GE+ P  IR +A+  + + ++   F V K +
Sbjct: 747 NVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKTF 806

Query: 390 YPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGK--TFVTNIR 447
             MLD    +G  + + AI  +G  ++   +PET+G+TL DIE     + +  + V NI+
Sbjct: 807 QDMLDVIGSYGAFWLFGAICFIGLFFVIIYVPETQGKTLEDIERKMMGRVRRMSSVANIK 866

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila willistoni (taxid: 7260)

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score =  148 bits (374), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 157/336 (46%), Gaps = 22/336 (6%)

Query: 105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFL---GSFLHWRSAAILNLLFPILALCAL 161
            Y+ E  QP +RG L     + T FG +  L     G ++ W   A L    PI  L  +
Sbjct: 462 VYLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLM 518

Query: 162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQR 221
           + IPE+P W +S+GR   A  +L WLRG      V  EL  I K+ +++E     +   +
Sbjct: 519 FLIPETPRWYVSRGRDDRARKALQWLRG--KKADVDPELKGIIKSHQDAE-----RHASQ 571

Query: 222 RPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGV 281
                + M++  L P  I   L F  Q  G+  +  Y V IF+   + +D    T+++GV
Sbjct: 572 SAMLDL-MKKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGV 630

Query: 282 AELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVL 341
                  +  +LI   G++ L  IS     A  I +     F         +    +L L
Sbjct: 631 VNFIATFIATMLIDRLGRKMLLYIS---DVAMIITLMTLGGFFYVKNSGQDVSQVGWLPL 687

Query: 342 AAFLTHIC-----IRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF 396
           AAF+ ++         +PW+++GE+ P  IR +A+  + + ++   F V K +  +++  
Sbjct: 688 AAFVIYVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAI 747

Query: 397 HLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIE 432
              GT + + +I V+G  ++ F +PET+G++L DIE
Sbjct: 748 GTHGTFWMFGSICVIGLAFVIFYVPETQGKSLEDIE 783

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Aedes aegypti (taxid: 7159)

>sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1

 Score =  147 bits (372), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 169/352 (48%), Gaps = 24/352 (6%)

Query: 105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFI 164
            Y+ E  QP +RG L    +     G +    +GS+L W + A      P+     +   
Sbjct: 164 VYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILT 223

Query: 165 PESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPN 224
           PE+P W +S+ R+QEA  SL WLRG      ++ E+  +T  I ++E  R G +      
Sbjct: 224 PETPRWYVSKARVQEARKSLRWLRG--KNVNIEKEMRDLT--ISQTESDRTGGNA----- 274

Query: 225 YRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAEL 284
           ++    + +L    I   L    Q  G+  +  YA  IF+   + +D   A++++GV   
Sbjct: 275 FKQLFSKRYLPAVMISLGLMLFQQLTGINAVIFYAASIFQMSGSSVDENLASIIIGVVNF 334

Query: 285 GGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHL--------SYGWDSPLVPT 336
               +  +LI   G++ L  IS+   A    ++A+ A F+L        +YGW    +P 
Sbjct: 335 ISTFIATMLIDRLGRKVLLYISS--VAMITTLLALGAYFYLKQNHIDVTAYGW----LPL 388

Query: 337 VFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF 396
             LV+      I    +PW+++GE+ P+ IR TA+  +   ++   F V K +  ++D  
Sbjct: 389 ACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQNIIDAI 448

Query: 397 HLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRR 448
           ++ GTL+ +A I + G L++ F +PET+G++L +IE      G   V NI +
Sbjct: 449 YMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEMKLTS-GSRRVRNISK 499

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Bombyx mori (taxid: 7091)

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score =  147 bits (372), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 164/355 (46%), Gaps = 28/355 (7%)

Query: 105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFL---GSFLHWRSAAILNLLFPILALCAL 161
            Y+ E  QP +RG L     + T FG +  L     GSF++W   A L    P+  L  +
Sbjct: 512 VYLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILM 568

Query: 162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQR 221
           + IPE+P W +S+GR + A  +L WLRG      V+ EL  + ++  ++       D Q 
Sbjct: 569 FLIPETPRWFVSRGREERARKALSWLRG--KEADVEPELKGLMRSQADA-------DRQA 619

Query: 222 RPNYRM-YMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLG 280
             N  +  ++R  L P +I   L F  Q  G+  +  Y V IF+   + +D    T+++G
Sbjct: 620 TQNTMLELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVQIFKDAGSTIDGNICTIIVG 679

Query: 281 VAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA--VYAQFH----LSYGWDSPLV 334
           V       + +VLI   G++ L  +S         V+    Y + H     + GW  PL 
Sbjct: 680 VVNFLATFIGIVLIDRAGRKILLYVSNIAMILTLFVLGGFFYCKAHGPDVSNLGW-LPLT 738

Query: 335 PTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD 394
             V  +L   L    I   PW+++GE+ P  IR +A+  + + ++   F V K +  +  
Sbjct: 739 CFVIYILGFSLGFGPI---PWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKTFQDLTV 795

Query: 395 TFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGK--TFVTNIR 447
                G  + + AI  VG  ++   +PET+G+TL DIE     + +  + V NI+
Sbjct: 796 AMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIERKMMGRVRRMSSVANIK 850

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila erecta (taxid: 7220)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	553
193688235	560	PREDICTED: facilitated trehalose transpo	0.631	0.623	0.550	3e-99
291461585	544	sugar transporter 13 [Nilaparvata lugens	0.643	0.654	0.476	6e-99
307207615	526	Sugar transporter ERD6-like 7 [Harpegnat	0.596	0.627	0.460	5e-91
91082977	1252	PREDICTED: similar to sugar transporter	0.654	0.289	0.434	2e-89
270007037	1229	hypothetical protein TcasGA2_TC013484 [T	0.649	0.292	0.431	3e-89
380020516	518	PREDICTED: facilitated trehalose transpo	0.591	0.631	0.471	3e-89
332016797	531	Sugar transporter ERD6-like 2 [Acromyrme	0.591	0.615	0.463	4e-89
328788677	518	PREDICTED: facilitated trehalose transpo	0.582	0.621	0.464	6e-89
307176944	517	Sugar transporter ERD6-like 6 [Camponotu	0.620	0.663	0.443	1e-88
350411515	518	PREDICTED: facilitated trehalose transpo	0.584	0.623	0.475	3e-87

>gi|193688235|ref|XP_001945235.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 195/354 (55%), Positives = 256/354 (72%), Gaps = 5/354 (1%)

Query: 103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 162
           VLTYVAEIT+PH+RG+L+A +S T I G++SQ  LG+F HWR   + N + P++A  +L 
Sbjct: 188 VLTYVAEITEPHIRGVLAALSSTTVILGSISQFILGNFFHWRKIVLFNTIVPVVAFISLL 247

Query: 163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
            IPESPHWLI++GR+ EA  SLCWLRGWV PD VQ ELS ++K+I  +E K   K  ++ 
Sbjct: 248 LIPESPHWLITKGRIAEAEKSLCWLRGWVQPDAVQYELSMLSKSIALNEEKVRMKKNKKF 307

Query: 223 PNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVA 282
             Y  Y RRTFLLPY I+T+ FF G FGG +TLQ YAV IFE++ +P++ Y +TL+LG+ 
Sbjct: 308 --YTFYTRRTFLLPYFIITASFFFGSFGGTSTLQVYAVQIFETLGSPINGYTSTLVLGIL 365

Query: 283 ELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYA---QFHLSYGWDSPLVPTVFL 339
           +L G +L ++LIH+TGKRPLA++ST GS+ CF VV+ Y    Q++     +   +P VFL
Sbjct: 366 QLMGGILGLLLIHWTGKRPLAIVSTLGSSLCFFVVSAYVFIKQYNEEIIINVTWIPLVFL 425

Query: 340 VLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW 399
             AAF+THI IRLLPWMLIGEV+P NIR  ASGASGSSSYIF+F  NK Y+ +LD  +L 
Sbjct: 426 NTAAFMTHISIRLLPWMLIGEVYPPNIRGQASGASGSSSYIFSFIANKSYFMVLDCINLS 485

Query: 400 GTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRRAEKKR 453
           GT   YA +S++G L +Y +MPETEG  L DI+ HFADK KTFV  I R++K +
Sbjct: 486 GTFLLYAIVSLIGCLMLYTMMPETEGVPLEDIQNHFADKTKTFVMKIERSDKIK 539

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461585|dbj|BAI83427.1| sugar transporter 13 [Nilaparvata lugens]

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 183/384 (47%), Positives = 256/384 (66%), Gaps = 28/384 (7%)

Query: 103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 162
           VLTYVAEIT P LRGMLSATASM  I G   Q   G+FL WR+ A++N+ FPILA+ ALY
Sbjct: 170 VLTYVAEITTPQLRGMLSATASMIVILGVFIQFIFGTFLPWRTIALVNVTFPILAIIALY 229

Query: 163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
            +PESPHWL+ +GR+++A  SL WLRGWV P +VQ ELS + KAI+ S      ++ QR+
Sbjct: 230 GVPESPHWLMGKGRVEDAEKSLQWLRGWVKPHEVQVELSHLAKAIKSSNF----EESQRK 285

Query: 223 PNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVA 282
            ++  +  +TFL PY +V+  F  G F GMTTLQT+AV IF  +  P+D Y ATL+LG+ 
Sbjct: 286 RSWHAFKEKTFLRPYLLVSMTFLFGHFCGMTTLQTFAVSIFAEMGTPIDKYLATLILGLV 345

Query: 283 ELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQF-------------HLSYGW 329
           +L GAL CVVL+H+TGKRPLA++S  G++ C+++VA+YA +               ++ W
Sbjct: 346 QLLGALTCVVLVHWTGKRPLAMVSLVGNSICWLLVAMYASWFRTHPQPHPHPEHSAAFSW 405

Query: 330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLY 389
               +P   ++L+AFLTH+C+RLLPW+LIGEV+   +RATASGASGS+ YIF F  NK Y
Sbjct: 406 ----LPMALIILSAFLTHMCVRLLPWILIGEVYTPEVRATASGASGSAGYIFGFLANKSY 461

Query: 390 YPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRRA 449
           + ++D     GT   Y   S+ G L++Y+ +PETEGRTL +I+EHFA   +  ++N    
Sbjct: 462 FMIMDRIEASGTFTMYTIFSIGGALFLYYFLPETEGRTLVEIQEHFAGN-RCLISN---- 516

Query: 450 EKKRHAARVEGQEEVKGEDNFGME 473
            K+ ++   + +E+    DN  M+
Sbjct: 517 -KETNSTGAQSKED-YAADNPAMD 538

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207615|gb|EFN85275.1| Sugar transporter ERD6-like 7 [Harpegnathos saltator]

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 159/345 (46%), Positives = 240/345 (69%), Gaps = 15/345 (4%)

Query: 103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 162
           VLTYVAE+TQPHLRGMLSAT+S++ I G  +Q+  GS  HWR+ A++NL +PIL+  +L 
Sbjct: 149 VLTYVAEVTQPHLRGMLSATSSLSVILGVFTQMLSGSLAHWRTVALVNLAYPILSFLSLC 208

Query: 163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEE-SELKRLGKDGQR 221
            +PESP+WL  +GR++E+  +LCWLRGWV P +V+ E   + KA+++ + +  +  DG+ 
Sbjct: 209 LMPESPYWLAVKGRLKESERALCWLRGWVGPSQVRDEFQTLCKAVQKPAGVGTVDPDGKE 268

Query: 222 RPN---YRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLL 278
           R     +R Y +RTF LP+ +V++ FFI  FGG  TLQT+AV IF  + AP+D Y AT+ 
Sbjct: 269 REKEKAWRSYTKRTFYLPFILVSAAFFISAFGGTVTLQTFAVVIFVKLKAPIDKYTATVF 328

Query: 279 LGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFH-------LSYGWDS 331
           LGVA+L G L+CV+ IH+TG+R ++ +S GG+  CF++ A+Y   +       + Y W  
Sbjct: 329 LGVAQLIGVLICVLTIHFTGRRMMSFLSVGGTGLCFLLAAIYGFLNDADYLDGVKYTW-- 386

Query: 332 PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYP 391
             +PT  ++ AAF+ ++ I+LLPW+LIGEVFP  +R+ A+GA+GS+ Y+F+   NK +  
Sbjct: 387 --IPTTLMIGAAFMANVGIKLLPWVLIGEVFPVKVRSGATGAAGSTGYVFSSVANKTFLY 444

Query: 392 MLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFA 436
           M++   L GT +FY  I+++G   ++ ++PETEGRTL +IEEH+A
Sbjct: 445 MMNGMSLAGTFFFYFLINLIGGCLLFAILPETEGRTLIEIEEHYA 489

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082977|ref|XP_974017.1| PREDICTED: similar to sugar transporter [Tribolium castaneum]

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 173/398 (43%), Positives = 249/398 (62%), Gaps = 36/398 (9%)

Query: 103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 162
           VLTYVAEITQPHLRGMLS+T++M  I G + Q  LG+FL+WR   + N +FPI+A   L 
Sbjct: 144 VLTYVAEITQPHLRGMLSSTSTMAVILGVLVQFLLGTFLNWRLVTLCNCVFPIVAFVLLI 203

Query: 163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDG-QR 221
           F+PE+P WLIS+ R  +A  SL WLRGW + ++++ E   + K + ++    +G D  + 
Sbjct: 204 FVPETPIWLISKNRYLDARKSLAWLRGWTSLNEIELEFQDLCKQLGKA--GEIGIDNPEN 261

Query: 222 RPN--------YRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPY 273
            PN         +++ R+ F  PY++V   FF+G F GM  LQTYA+ IF ++ +P+D Y
Sbjct: 262 SPNQKLSKLEHLKLFTRKNFFWPYSLVALTFFLGHFNGMNALQTYAIKIFAAVKSPIDKY 321

Query: 274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQF----HLSYGW 329
           +AT++LGV EL G + CV L+H+TGKR + LIS  GS  CF +VA+Y       HL    
Sbjct: 322 YATVILGVVELLGCVACVTLVHFTGKRVINLISLLGSGVCFFIVAIYTYISDIKHLEGPQ 381

Query: 330 DSPL----VPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAV 385
            S L    +PT FL+ AAFL+++ IR+LPW+L GEVF N  RATASG SG+  YIF F  
Sbjct: 382 HSDLKHNWIPTFFLITAAFLSYVGIRILPWILTGEVFSNETRATASGLSGAIGYIFGFLA 441

Query: 386 NKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTN 445
           NK++  M+  F L GT +F +++S++G + +YFV+PETEG+TL DI EHF  +G T    
Sbjct: 442 NKIFLSMVTVFTLPGTFWFNSSVSILGAILLYFVLPETEGKTLYDITEHF--QGNT---- 495

Query: 446 IRRAEKKRHAARVEGQEEVKGEDNFGMEGEDGKYISRV 483
                      +++ + +  G DN   E E+ + ++ V
Sbjct: 496 -----------KLDNKVQRNGIDNKAFELEESRTLTYV 522

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007037|gb|EFA03485.1| hypothetical protein TcasGA2_TC013484 [Tribolium castaneum]

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 173/401 (43%), Positives = 248/401 (61%), Gaps = 42/401 (10%)

Query: 103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 162
           VLTYVAEITQPHLRGMLS+T++M  I G + Q  LG+FL+WR   + N +FPI+A   L 
Sbjct: 144 VLTYVAEITQPHLRGMLSSTSTMAVILGVLVQFLLGTFLNWRLVTLCNCVFPIVAFVLLI 203

Query: 163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
           F+PE+P WLIS+ R  +A  SL WLRGW + ++++ E   + K     +L + G+ G   
Sbjct: 204 FVPETPIWLISKNRYLDARKSLAWLRGWTSLNEIELEFQDLCK-----QLGKAGEIGIDN 258

Query: 223 P------------NYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPL 270
           P            + +++ R+ F  PY++V   FF+G F GM  LQTYA+ IF ++ +P+
Sbjct: 259 PENSPNQKLSKLEHLKLFTRKNFFWPYSLVALTFFLGHFNGMNALQTYAIKIFAAVKSPI 318

Query: 271 DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQF----HLS 326
           D Y+AT++LGV EL G + CV L+H+TGKR + LIS  GS  CF +VA+Y       HL 
Sbjct: 319 DKYYATVILGVVELLGCVACVTLVHFTGKRVINLISLLGSGVCFFIVAIYTYISDIKHLE 378

Query: 327 YGWDSPL----VPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFA 382
               S L    +PT FL+ AAFL+++ IR+LPW+L GEVF N  RATASG SG+  YIF 
Sbjct: 379 GPQHSDLKHNWIPTFFLITAAFLSYVGIRILPWILTGEVFSNETRATASGLSGAIGYIFG 438

Query: 383 FAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTF 442
           F  NK++  M+  F L GT +F +++S++G + +YFV+PETEG+TL DI EHF  +G T 
Sbjct: 439 FLANKIFLSMVTVFTLPGTFWFNSSVSILGAILLYFVLPETEGKTLYDITEHF--QGNT- 495

Query: 443 VTNIRRAEKKRHAARVEGQEEVKGEDNFGMEGEDGKYISRV 483
                         +++ + +  G DN   E E+ + ++ V
Sbjct: 496 --------------KLDNKVQRNGIDNKAFELEESRTLTYV 522

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020516|ref|XP_003694129.1| PREDICTED: facilitated trehalose transporter Tret1-like [Apis florea]

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 159/337 (47%), Positives = 231/337 (68%), Gaps = 10/337 (2%)

Query: 103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 162
           V+TYVAE+TQPHLRGMLSAT++M+ I G  +Q+  G   +WR+  ++NL++P++   AL 
Sbjct: 153 VMTYVAEVTQPHLRGMLSATSTMSIILGIFTQMLGGKLGNWRTVTLVNLIYPLICFLALC 212

Query: 163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
            +PESP+WL ++GR +EA  +LCWLRGWV+P +V++EL  I + + +           + 
Sbjct: 213 AVPESPYWLAAKGRRKEAEQALCWLRGWVSPAQVKSELQIICEDVNKPA-------ASQE 265

Query: 223 PNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVA 282
             ++ Y ++TF  P+ +VTS FFIG FGG  TLQTYAV IF  +H P++ Y A + LG+A
Sbjct: 266 KIWKSYSKKTFYTPFLLVTSAFFIGNFGGTNTLQTYAVMIFMKLHTPIEKYTAAVFLGLA 325

Query: 283 ELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDS---PLVPTVFL 339
           EL G ++CV +IH++GKR L+ +S GG+  CF + A+Y     S   +S      PT  L
Sbjct: 326 ELIGTMICVFVIHFSGKRLLSFLSVGGTGLCFCLAAIYGYLDNSRIINSENLTWFPTTLL 385

Query: 340 VLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW 399
           + AAFL+H  IRLLPW+L GEVFP N+R++A+G SGS  YIF    NK++  M++   L 
Sbjct: 386 IGAAFLSHAGIRLLPWVLAGEVFPVNVRSSATGISGSIGYIFNSVSNKIFLYMVNGMSLP 445

Query: 400 GTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFA 436
           GT +FYA I+ VG + +YF++PETEGR+L++IEEH+A
Sbjct: 446 GTFFFYALINFVGGILLYFILPETEGRSLKEIEEHYA 482

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016797|gb|EGI57618.1| Sugar transporter ERD6-like 2 [Acromyrmex echinatior]

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 158/341 (46%), Positives = 230/341 (67%), Gaps = 14/341 (4%)

Query: 103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 162
           V+TYVAE+TQP+LRGMLSAT+SM  I G  +Q+  GS +HWR+ A++NL++PIL   AL 
Sbjct: 70  VITYVAEVTQPYLRGMLSATSSMAVILGIFTQMLSGSLVHWRTVALINLIYPILCFLALC 129

Query: 163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
            +PESPHWL  +GR++E+  +LCWLRGWV P  V  E   + +AI++      G + ++ 
Sbjct: 130 LVPESPHWLAVKGRLKESEHALCWLRGWVNPSYVHNEFGALCEAIQKPT-DNTGSEKEKI 188

Query: 223 PNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVA 282
             ++ Y  RTF  P+ +V++ FFI  FGG TTLQT+AV IF  ++AP+D Y AT+ LG+A
Sbjct: 189 --WQAYTDRTFYQPFFLVSAAFFISNFGGCTTLQTFAVIIFAKLNAPIDKYTATVFLGIA 246

Query: 283 ELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFH-------LSYGWDSPLVP 335
           +L G  +CV+ IH  GKR L+ +S GG+  CF+  A+Y   +       + Y W    +P
Sbjct: 247 QLIGITICVLTIHLMGKRKLSFLSVGGTGLCFLTTAIYGYLNNADYLDGIKYSW----IP 302

Query: 336 TVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT 395
           T F++  AF  +ICIR LPW+L GEVFP  +R++A+GA+G  +YI A   NK +  M ++
Sbjct: 303 TTFMIGGAFTANICIRTLPWILAGEVFPVKVRSSATGAAGMIAYIMASIANKTFLYMENS 362

Query: 396 FHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFA 436
             L G ++FY+ I++VG   +Y ++PETEGRTL++IEEH+A
Sbjct: 363 MSLPGAIFFYSMINLVGLCLLYVILPETEGRTLQEIEEHYA 403

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788677|ref|XP_623950.2| PREDICTED: facilitated trehalose transporter Tret1-like [Apis mellifera]

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 159/342 (46%), Positives = 231/342 (67%), Gaps = 20/342 (5%)

Query: 103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 162
           V+TYVAE+TQPHLRGMLSAT++M+ I G  +Q+  G   +WR+  ++NL++P++   AL 
Sbjct: 153 VMTYVAEVTQPHLRGMLSATSTMSIILGIFTQMLGGKLGNWRTVTLVNLIYPLICFLALC 212

Query: 163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
            +PESP+WL ++GR +EA  +LCWLRGWV+P +V++EL  I + + +           + 
Sbjct: 213 AVPESPYWLAAKGRQKEAEQALCWLRGWVSPAQVKSELQIICEDVNKPA-------ASQE 265

Query: 223 PNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVA 282
             ++ Y ++TF  P+ +VTS FFIG FGG  TLQTYAV IF  +H P++ Y A + LG+A
Sbjct: 266 KIWKSYSKKTFYTPFLLVTSAFFIGNFGGTNTLQTYAVMIFMKLHTPIEKYTAAVFLGLA 325

Query: 283 ELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLV-------- 334
           EL G ++CV +IH+ GKR L+ +S GG+  CF + A+Y         DS ++        
Sbjct: 326 ELIGTMICVFVIHFAGKRLLSFLSVGGTGLCFCLAAIYGYLD-----DSRIINSENLTWF 380

Query: 335 PTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD 394
           PT  L+ AAFL+H  IRLLPW+L GEVFP N+R++A+G SGS  YIF    NK++  M++
Sbjct: 381 PTTLLIGAAFLSHGGIRLLPWVLAGEVFPVNVRSSATGISGSIGYIFNSVSNKIFLYMVN 440

Query: 395 TFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFA 436
              L GT +FYA I+ VG + +YF++PETEGR+L++IEEH+A
Sbjct: 441 GMSLPGTFFFYALINFVGGILLYFILPETEGRSLKEIEEHYA 482

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176944|gb|EFN66250.1| Sugar transporter ERD6-like 6 [Camponotus floridanus]

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 233/363 (64%), Gaps = 20/363 (5%)

Query: 103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 162
           VLTYVAE+TQP+LRGMLSAT+SM+ I G  +Q+  GS  HWR+ A++NL++PI+   AL 
Sbjct: 147 VLTYVAEVTQPNLRGMLSATSSMSVILGIFTQMLSGSLAHWRTVAMINLIYPIICFFALC 206

Query: 163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
            +PESPHWL ++GR  E+ ++LCWLRGW  P +VQ E   I + +++        D  ++
Sbjct: 207 LVPESPHWLAAKGRFAESESALCWLRGWTNPPQVQNEFQMICETVQKPADN---TDSDKK 263

Query: 223 PNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVA 282
             +R Y +RTF +P+ +++  FF+  FGG  TLQT+AV IFE + AP+D Y AT+ +GVA
Sbjct: 264 EIWRSYTKRTFYMPFILISISFFVSSFGGGATLQTFAVVIFEKLKAPIDNYTATVFMGVA 323

Query: 283 ELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFH-------LSYGWDSPLVP 335
           +L   ++CV++IH+ GKR L  IS   S  C +  AVY           + Y W    +P
Sbjct: 324 QLVATMICVLVIHFLGKRKLVFISVSASGLCLLATAVYGFLSDADYLDGVRYTW----LP 379

Query: 336 TVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT 395
           T  ++  AF T+  IRLLPW+LIGEVFP  +R+TA+GASG   YI     NK +  M++ 
Sbjct: 380 TTLMIGTAFATNFGIRLLPWILIGEVFPVEVRSTATGASGMVGYILLSIANKTFLYMMNG 439

Query: 396 FHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIR-RAEKKRH 454
             L GT  F A I++ G  ++Y+++PETEGRTLR++EEHFA      + N++ R  K++H
Sbjct: 440 ISLSGTFIFNACINLAGLCFLYWMLPETEGRTLREVEEHFAG-----IQNLKDRPRKEQH 494

Query: 455 AAR 457
             +
Sbjct: 495 VTK 497

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411515|ref|XP_003489374.1| PREDICTED: facilitated trehalose transporter Tret1-like [Bombus impatiens]

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 162/341 (47%), Positives = 226/341 (66%), Gaps = 18/341 (5%)

Query: 103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 162
           V+TYVAE+TQPHLRGMLSAT++M  I G  +Q+  G   +WR   ++NL++P++ L AL 
Sbjct: 153 VMTYVAEVTQPHLRGMLSATSTMAVILGIFTQMLGGKLGNWRIVTMINLIYPLICLVALC 212

Query: 163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
            +PESP+WL+++GR +EA  +LCWLRGWV+P  VQ+EL  I + +++           + 
Sbjct: 213 LVPESPYWLVAKGRQREAERALCWLRGWVSPIHVQSELRIICQDVQK-------PAESKE 265

Query: 223 PNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVA 282
             ++ + +RTF +P+ +V+S F IG FGG +TLQTYAV IF+S+ APLD Y A + LG+A
Sbjct: 266 KIWKSFGKRTFYVPFLLVSSAFCIGAFGGTSTLQTYAVLIFDSLDAPLDKYTAAVFLGLA 325

Query: 283 ELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQF-------HLSYGWDSPLVP 335
           EL G LL V  IH+TGKR L  +S GG+  CF +VAVY            S  W    +P
Sbjct: 326 ELVGTLLSVCAIHFTGKRLLTFLSVGGTGMCFCLVAVYGYLTEADMINTESISW----IP 381

Query: 336 TVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT 395
              L+ AAFL+H  IRLLPW+L GEVFP  +R++A+G +GS  YIF    NK+Y  M++ 
Sbjct: 382 MTLLIGAAFLSHAGIRLLPWVLAGEVFPVKVRSSATGMAGSIGYIFNSIANKVYLYMVNG 441

Query: 396 FHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFA 436
             L GT  FY  I+  G   +YF++PETEGR+L++IEEH+A
Sbjct: 442 MSLPGTFLFYTLINFAGGALLYFILPETEGRSLKEIEEHYA 482

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	553
FB|FBgn0051100	716	CG31100 [Drosophila melanogast	0.405	0.312	0.443	1.4e-71
UNIPROTKB|A9ZSY2	502	Tret1 "Facilitated trehalose t	0.567	0.625	0.281	1.3e-36
TAIR|locus:2036039	464	AT1G08890 [Arabidopsis thalian	0.576	0.687	0.286	7.2e-36
UNIPROTKB|A9ZSY3	505	Tret1 "Facilitated trehalose t	0.589	0.645	0.284	8.5e-33
TAIR|locus:2036009	462	AT1G08900 [Arabidopsis thalian	0.571	0.683	0.279	7.3e-31
UNIPROTKB|Q291H8	868	Tret1 "Facilitated trehalose t	0.560	0.357	0.275	1.9e-30
UNIPROTKB|B4GAP7	869	Tret1 "Facilitated trehalose t	0.560	0.356	0.275	1.9e-30
UNIPROTKB|A5LGM7	504	Tret1 "Facilitated trehalose t	0.566	0.621	0.253	2e-29
UNIPROTKB|I3LQQ9	506	SLC2A6 "Uncharacterized protei	0.575	0.628	0.278	3.4e-29
UNIPROTKB|B4KR05	863	Tret1 "Facilitated trehalose t	0.587	0.376	0.273	3e-28

FB|FBgn0051100 CG31100 [Drosophila melanogaster (taxid:7227)]

 Score = 467 (169.5 bits), Expect = 1.4e-71, Sum P(2) = 1.4e-71
 Identities = 105/237 (44%), Positives = 135/237 (56%)

Query:    96 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPI 155
             M AP   VLTYVAEIT+P  RG+LSA  +   I G   Q  LGS + WRS A ++  FP+
Sbjct:   166 MEAP---VLTYVAEITEPKYRGILSALGTTCVITGVFIQFILGSLMDWRSVAAVSSAFPV 222

Query:   156 LALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQ-----IT-KAIEE 209
             + +  L F+PESP WLI + R +EA  SL WLRGWV    ++ E +Q     IT KAIE 
Sbjct:   223 ITIIMLCFVPESPVWLIREQRFREAVKSLQWLRGWVPEHMIEAEFNQLYDELITQKAIEL 282

Query:   210 SELKRLGKDGQRRP---NYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESI 266
             S    +   GQRR      RM+ +R+FL+P+ +V+  FF G F G T LQTYAV IF ++
Sbjct:   283 SA-DGIPPPGQRRTLGQRLRMWRKRSFLVPFLLVSFSFFTGHFSGKTPLQTYAVQIFHTL 341

Query:   267 HAPLDPYFXXXXXXXXXXXXXXXXXXXIHYTGKRPLALISTGGSAACFIVVAVYAQF 323
              AP++ Y                    IH+TGKRPL L+ST G+  CF   A YA F
Sbjct:   342 KAPMNKYHATILLGVAEMLATILGVVLIHFTGKRPLVLVSTVGTGLCFFGTATYAHF 398

GO:0016021 "integral to membrane" evidence=ISS

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=ISS

GO:0015749 "monosaccharide transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)]

 Score = 349 (127.9 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 96/341 (28%), Positives = 153/341 (44%)

Query:   106 YVAEITQPHLRGMLSATASMTTIFGTVSQLFL---GSFLHWRSAAILNLLFPILALCALY 162
             Y+ E  QP +RG L     + T+FG    L     G +L WR+ A+L    PI+ L  ++
Sbjct:   160 YLGESIQPEVRGSLGL---LPTVFGNSGILMCFTAGMYLAWRNLALLGACIPIIFLILMF 216

Query:   163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
              IPE+P W IS+G+++EA  SL WLRG  T D +  EL  I K   ESE  R+  +G   
Sbjct:   217 LIPETPRWYISKGKIKEARKSLQWLRG-KTAD-ISEELDSIQKMHIESE--RIATEGAL- 271

Query:   223 PNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFXXXXXXXX 282
                 ++ R+  + P  I   L F  QF G+  +  Y V IF+   + +D           
Sbjct:   272 --IELF-RKNHIKPVFISLGLMFFQQFSGINAVIFYTVQIFKDSGSTVDENLSTIIVGLV 328

Query:   283 XXXXXXXXXXXIHYTGKRPLALISTGGSAACFIVVAVYAQFHL-------SYGWDSPLVP 335
                        I   G++ L  IS+     C  +      F++       ++GW    +P
Sbjct:   329 NFISTFVAAMIIDRLGRKMLLYISS--ILMCITLFTFGTFFYVKELMDVTAFGW----IP 382

Query:   336 TVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATXXXXXXXXXYIFAFAVNKLYYPMLDT 395
              + L++           +PW+++GE+ P  IR T         +   F V K Y  ++  
Sbjct:   383 LMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASVATAFNWSCTFVVTKTYEDLVLH 442

Query:   396 FHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFA 436
                +GT + +  +  V  +++   +PET GR+L +IE  FA
Sbjct:   443 IGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIERRFA 483

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

TAIR|locus:2036039 AT1G08890 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 96/335 (28%), Positives = 165/335 (49%)

Query:   102 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 161
             +V  Y+AEIT    RG  S +  +   FG     F G+F HWR+ A+L+ +   + +  L
Sbjct:   137 VVPVYIAEITPKAFRGGFSFSNQLLQSFGISLMFFTGNFFHWRTLALLSAIPCGIQMICL 196

Query:   162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQR 221
             +FIPESP WL   GR +E   +L  LRG    D ++ E ++I + +E S  +R  + G +
Sbjct:   197 FFIPESPRWLAMYGRERELEVTLKRLRG-ENGDILE-EAAEIRETVETS--RRESRSGLK 252

Query:   222 RPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFXXXXXXX 281
                    M+     P  I   L  + QF G + +  YA  IF++   P D          
Sbjct:   253 D---LFNMKNAH--PLIIGLGLMLLQQFCGSSAISAYAARIFDTAGFPSD--IGTSILAV 305

Query:   282 XXXXXXXXXXXXIHYTGKRPLALISTGGSAAC-FIV-VAVYAQFHLSYG-WDSPLVPTVF 338
                         +   G+RPL + S+ G   C F++ ++ Y Q H  +  + SP++  V 
Sbjct:   306 ILVPQSIIVMFAVDRCGRRPLLMSSSIGLCICSFLIGLSYYLQNHGDFQEFCSPIL-IVG 364

Query:   339 LVLAAFLTHICIRLLPWMLIGEVFPNNIRATXXXXXXXXXYIFAFAVNKLYYPMLDTFHL 398
             LV       I +  LPW+++ EVFP N++ T         + F++ +   +  M+  +  
Sbjct:   365 LVGYVLSFGIGLGGLPWVIMSEVFPVNVKITAGSLVTVSNWFFSWIIIFSFNFMMQ-WSA 423

Query:   399 WGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEE 433
             +GT + +A +S++  ++++ ++PET+GRTL DI++
Sbjct:   424 FGTYFIFAGVSLMSFVFVWTLVPETKGRTLEDIQQ 458

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 100/352 (28%), Positives = 159/352 (45%)

Query:   106 YVAEITQPHLRGMLSATASMTTIFGTVSQL--FL-GSFLHWRSAAILNLLFPILALCALY 162
             Y+ E  QP +RG L     + T FG    L  FL GS+L W + A      P+     + 
Sbjct:   165 YIGETIQPEVRGALGL---LPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMI 221

Query:   163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
               PE+P W +S+ R+QEA  SL WLRG      ++ E+  +T  I ++E  R G +  ++
Sbjct:   222 LTPETPRWYVSKARVQEARKSLRWLRGKNV--NIEKEMRDLT--ISQTESDRTGGNAFKQ 277

Query:   223 PNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFXXXXXXXX 282
                 ++ +R +L    I   L    Q  G+  +  YA  IF+   + +D           
Sbjct:   278 ----LFSKR-YLPAVMISLGLMLFQQLTGINAVIFYAASIFQMSGSSVDENLASIIIGVV 332

Query:   283 XXXXXXXXXXXIHYTGKRPLALISTGGSAACFIVVAVY---AQFHL---SYGWDSPLVPT 336
                        I   G++ L  IS+       + +  Y    Q H+   +YGW  PL   
Sbjct:   333 NFISTFIATMLIDRLGRKVLLYISSVAMITTLLALGAYFYLKQNHIDVTAYGW-LPLACL 391

Query:   337 VFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATXXXXXXXXXYIFAFAVNKLYYPMLDTF 396
             V  VL  F   I    +PW+++GE+ P+ IR T         +   F V K +  ++D  
Sbjct:   392 VIYVLG-F--SIGFGPIPWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQNIIDAI 448

Query:   397 HLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTFVTNIRR 448
             ++ GTL+ +A I + G L++ F +PET+G++L +IE      G   V NI +
Sbjct:   449 YMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEMKLTS-GSRRVRNISK 499

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 7.3e-31, Sum P(2) = 7.3e-31
 Identities = 94/336 (27%), Positives = 155/336 (46%)

Query:   102 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 161
             +V  Y+AEIT    RG  S +  +    G     F G+F HWR+ A+L+ +     +  L
Sbjct:   135 VVPVYIAEITPKTFRGGFSYSNQLLQCLGISLMFFTGNFFHWRTLALLSAIPSAFQVICL 194

Query:   162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQR 221
             +FIPESP WL   G+ QE   SL  LRG    D +  E ++I + +E S      K+ Q 
Sbjct:   195 FFIPESPRWLAMYGQDQELEVSLKKLRG-ENSD-ILKEAAEIRETVEISR-----KESQS 247

Query:   222 RPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFXXXXXXX 281
                   ++     L   I   L  + QF G   +  YA  IF+    P D          
Sbjct:   248 GIRDLFHIGNAHSL--IIGLGLMLLQQFCGSAAISAYAARIFDKAGFPSD--IGTTILAV 303

Query:   282 XXXXXXXXXXXXIHYTGKRPLALISTGGSAAC--FIVVAVYAQFHLSYGWDSPLVPTVFL 339
                         +   G+RPL +IS+ G   C  FI ++ Y Q +   G    L   + +
Sbjct:   304 ILIPQSIVVMLTVDRWGRRPLLMISSIGMCICSFFIGLSYYLQKN---GEFQKLCSVMLI 360

Query:   340 V-LAAFLTHICIRL--LPWMLIGEVFPNNIRATXXXXXXXXXYIFAFAVNKLYYPMLDTF 396
             V L  +++   I L  LPW+++ E+FP N++ T         + F + +   +  M+  +
Sbjct:   361 VGLVGYVSSFGIGLGGLPWVIMSEIFPVNVKITAGSLVTMSNWFFNWIIIYSFNFMIQ-W 419

Query:   397 HLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIE 432
                GT + ++ +S+V  ++++ ++PET+GRTL +I+
Sbjct:   420 SASGTYFIFSGVSLVTIVFIWTLVPETKGRTLEEIQ 455

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q291H8 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 329 (120.9 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
 Identities = 93/338 (27%), Positives = 154/338 (45%)

Query:   106 YVAEITQPHLRGMLSATASMTTIFGTVSQL--FL-GSFLHWRSAAILNLLFPILALCALY 162
             Y+ E  QP +RG L     + T FG +  L  F+ G+++ W   A L    P+  L  ++
Sbjct:   525 YLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMF 581

Query:   163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
              IPE+P W +S+GR ++A  +L WLRG    D V+ EL  + ++  ++       D Q  
Sbjct:   582 LIPETPRWFVSRGREEKARKALSWLRG-KEAD-VEPELKGLMRSQADA-------DRQAT 632

Query:   223 PNYRM-YMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFXXXXXXX 281
              N  M  ++R  L P +I   L F  Q  G+  +  Y V IF+   + +D          
Sbjct:   633 QNKMMELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVGI 692

Query:   282 XXXXXXXXXXXXIHYTGKRPLALISTGGSAACFIVVAVYAQFHL--SYGWDSPLVPTVFL 339
                         I   G++ L  +S   + A  I + V   F    S+G D   +   +L
Sbjct:   693 VNFMATFIATLLIDRAGRKILLYVS---NIAMIITLFVLGGFFYCKSHGQDVSQLG--WL 747

Query:   340 VLAAFLTHIC-IRL----LPWMLIGEVFPNNIRATXXXXXXXXXYIFAFAVNKLYYPMLD 394
              L+ F+ +I    L    +PW+++GE+ P+ IR +         +   F V K +  M+D
Sbjct:   748 PLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVVTKTFQDMID 807

Query:   395 TFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIE 432
                  G  + + +I  +G  ++   +PET+G+TL DIE
Sbjct:   808 FMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIE 845

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4GAP7 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila persimilis (taxid:7234)]

 Score = 329 (120.9 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
 Identities = 93/338 (27%), Positives = 154/338 (45%)

Query:   106 YVAEITQPHLRGMLSATASMTTIFGTVSQL--FL-GSFLHWRSAAILNLLFPILALCALY 162
             Y+ E  QP +RG L     + T FG +  L  F+ G+++ W   A L    P+  L  ++
Sbjct:   526 YLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMF 582

Query:   163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
              IPE+P W +S+GR ++A  +L WLRG    D V+ EL  + ++  ++       D Q  
Sbjct:   583 LIPETPRWFVSRGREEKARKALSWLRG-KEAD-VEPELKGLMRSQADA-------DRQAT 633

Query:   223 PNYRM-YMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFXXXXXXX 281
              N  M  ++R  L P +I   L F  Q  G+  +  Y V IF+   + +D          
Sbjct:   634 QNKMMELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVGI 693

Query:   282 XXXXXXXXXXXXIHYTGKRPLALISTGGSAACFIVVAVYAQFHL--SYGWDSPLVPTVFL 339
                         I   G++ L  +S   + A  I + V   F    S+G D   +   +L
Sbjct:   694 VNFMATFIATLLIDRAGRKILLYVS---NIAMIITLFVLGGFFYCKSHGQDVSQLG--WL 748

Query:   340 VLAAFLTHIC-IRL----LPWMLIGEVFPNNIRATXXXXXXXXXYIFAFAVNKLYYPMLD 394
              L+ F+ +I    L    +PW+++GE+ P+ IR +         +   F V K +  M+D
Sbjct:   749 PLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVVTKTFQDMID 808

Query:   395 TFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIE 432
                  G  + + +I  +G  ++   +PET+G+TL DIE
Sbjct:   809 FMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIE 846

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)]

 Score = 315 (115.9 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
 Identities = 85/335 (25%), Positives = 150/335 (44%)

Query:   106 YVAEITQPHLRGMLSATASMTTIFGTVSQL--FL-GSFLHWRSAAILNLLFPILALCALY 162
             Y+ E  QP +RG L     + T FG +  L  F+ G +++W   A +  + PI  +    
Sbjct:   161 YLGETVQPEVRGTLGL---LPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMVLTL 217

Query:   163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
              IPE+P W +++GR + A  +L WLRG      V+ EL  I K+  E+E     +   + 
Sbjct:   218 LIPETPRWFVTRGREERARKALQWLRG--KKADVEPELKGIVKSHCEAE-----RHASQN 270

Query:   223 PNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFXXXXXXXX 282
               + + M+R+ L P  I   L F  Q  G+  +  Y V IF+   + +D           
Sbjct:   271 AIFDL-MKRSNLKPLLIALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTIIVGVV 329

Query:   283 XXXXXXXXXXXIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLA 342
                        I   G++ L  IS        + +  +  +  S G D   +   +L LA
Sbjct:   330 NFGATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNS-GNDVSNIG--WLPLA 386

Query:   343 AFLTHIC-----IRLLPWMLIGEVFPNNIRATXXXXXXXXXYIFAFAVNKLYYPMLDTFH 397
             +F+ ++      +  +PW+++GE+ P  IR +         +   F V K +  ++    
Sbjct:   387 SFVIYVIGFSSGVGPIPWLMLGEILPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIG 446

Query:   398 LWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIE 432
               G  +F+  I ++G  ++ F +PET+G++L +IE
Sbjct:   447 NHGAFWFFGVICLIGLFFVIFFVPETQGKSLEEIE 481

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|I3LQQ9 SLC2A6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 321 (118.1 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
 Identities = 99/355 (27%), Positives = 157/355 (44%)

Query:   106 YVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY-FI 164
             YV+EI  P +RG L AT  +  +FG++S   LG  L WR  A+     P+L +  L  F+
Sbjct:   156 YVSEIAPPGVRGALGATPQLMAVFGSLSLYALGLLLPWRWLAVAGE-GPVLVMILLLSFM 214

Query:   165 PESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPN 224
             P SP +L+S+GR  EA  +L WLRG    D ++ E  QI   + +    R+     R P+
Sbjct:   215 PNSPRFLLSRGRDSEALQALTWLRG-ADAD-IRWEFEQIQDNVRKQS-SRMSWAEARDPH 271

Query:   225 YRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFXXXXXXXXXX 284
               MY       P  I   + F+ Q  G+T +  Y   IF+S    L P +          
Sbjct:   272 --MYR------PITIALVMRFLQQLTGITPILVYLQSIFDSTAVLLLPKYDAAIVGAVRL 323

Query:   285 XXXXXXXXXIHYTGKRPLALISTGGSAACFIVVAVYAQF-------HLSYGWDS------ 331
                      +   G++ L  +S     A  + + +Y  F       + + G +S      
Sbjct:   324 LSVLIAAVTMDLAGRKALLFVSGATMFAANLTLGLYVHFGPKALTPNSTMGMESVPVAGT 383

Query:   332 --PLV-PTVFLVLAAFLTHICIRL--------LPWMLIGEVFPNNIRATXXXXXXXXXYI 380
               PLV PT +L L   L  +   +        + W+L+ E+ P   R           ++
Sbjct:   384 EQPLVTPTSYLTLVPLLATMLFIMGYAMGWGPITWLLMAEILPLRARGVASGLCVLVSWL 443

Query:   381 FAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHF 435
              AFA+ K + P+++ F L    +F+AA+ +V   +    +PET+GR+L  IE  F
Sbjct:   444 TAFALTKSFLPVVNAFGLQAPFFFFAAVCLVNLAFTGCCVPETKGRSLEQIESFF 498

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|B4KR05 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila mojavensis (taxid:7230)]

 Score = 332 (121.9 bits), Expect = 3.0e-28, P = 3.0e-28
 Identities = 97/355 (27%), Positives = 159/355 (44%)

Query:   106 YVAEITQPHLRGMLSATASMTTIFGTVSQL--FL-GSFLHWRSAAILNLLFPILALCALY 162
             Y+ E  QP +RG L     + T FG +  L  F+ G+++ W   A L    P+  L  ++
Sbjct:   520 YLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGTYMDWSMLAFLGGTLPVPFLILMF 576

Query:   163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR 222
              IPE+P W +S+GR + A  +L WLRG      V+ EL  + ++  ++       D Q  
Sbjct:   577 LIPETPRWYVSRGREERARKALVWLRG--KEADVEPELKGLMRSQADA-------DRQAT 627

Query:   223 PNYRM-YMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFXXXXXXX 281
              N  +  ++R+ L P +I   L F  Q  G+  +  Y V IF+   + +D          
Sbjct:   628 QNTMLELLKRSNLKPLSISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVGV 687

Query:   282 XXXXXXXXXXXXIHYTGKRPLALISTGGSAACFIVVAVYAQFHL--SYGWDSPLVPTVFL 339
                         I   G++ L  +S   + A  + + V   F    S G D+  V   +L
Sbjct:   688 VNFMATFIATVLIDRAGRKILLYVS---NVAMILTLFVLGGFFYCKSTGMDTSNVG--WL 742

Query:   340 VLAAFLTHIC-IRL----LPWMLIGEVFPNNIRATXXXXXXXXXYIFAFAVNKLYYPMLD 394
              L+ F+ +I    L    +PW+++GE+ P  IR +         +   F V K +  M+D
Sbjct:   743 PLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKSFQDMID 802

Query:   395 TFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKGKTF--VTNIR 447
                  G  + + AI  VG  ++ F +PET+G+TL DIE     + +    V NI+
Sbjct:   803 VMGAHGAFWMFGAICFVGLFFVIFYVPETQGKTLEDIERKMMGRVRRMSSVANIK 857

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	553
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-50
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	8e-45
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-31
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-19
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	8e-15
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	9e-12
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	3e-09
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	7e-09
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-08
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	1e-08
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	1e-08
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	1e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-08
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	3e-08
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	5e-08
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	7e-08
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-07
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-07
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	3e-07
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	3e-07
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-07
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	4e-07
TIGR03490	541	TIGR03490, Mycoplas_LppA, mycoides cluster lipopro	4e-07
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	6e-07
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	7e-07
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	8e-07
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	1e-06
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	1e-06
PTZ00362	479	PTZ00362, PTZ00362, hypothetical protein; Provisio	1e-06
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	1e-06
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	2e-06
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	2e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-06
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	3e-06
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	3e-06
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	3e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	4e-06
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	4e-06
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	4e-06
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	4e-06
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	4e-06
pfam11671	146	pfam11671, Apis_Csd, Complementary sex determiner	5e-06
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	6e-06
pfam11208	132	pfam11208, DUF2992, Protein of unknown function (D	6e-06
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	6e-06
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	7e-06
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	7e-06
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	7e-06
PTZ00362	479	PTZ00362, PTZ00362, hypothetical protein; Provisio	7e-06
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	7e-06
pfam11671	146	pfam11671, Apis_Csd, Complementary sex determiner	7e-06
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	1e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	1e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-05
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	1e-05
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	1e-05
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	1e-05
PHA03089	191	PHA03089, PHA03089, late transcription factor VLTF	1e-05
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	2e-05
PTZ00362	479	PTZ00362, PTZ00362, hypothetical protein; Provisio	2e-05
PTZ00362	479	PTZ00362, PTZ00362, hypothetical protein; Provisio	2e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	2e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	2e-05
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	2e-05
pfam11671	146	pfam11671, Apis_Csd, Complementary sex determiner	2e-05
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	2e-05
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	2e-05
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	2e-05
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	2e-05
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	3e-05
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	3e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	3e-05
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	3e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	4e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-05
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	4e-05
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	5e-05
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	5e-05
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	5e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-05
PTZ00053	470	PTZ00053, PTZ00053, methionine aminopeptidase 2; P	5e-05
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-05
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	6e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	6e-05
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	7e-05
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	7e-05
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	7e-05
pfam02414	285	pfam02414, Borrelia_orfA, Borrelia ORF-A	7e-05
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	8e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	9e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-04
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	1e-04
PHA03089	191	PHA03089, PHA03089, late transcription factor VLTF	1e-04
PHA03089	191	PHA03089, PHA03089, late transcription factor VLTF	1e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	1e-04
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	1e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-04
pfam02414	285	pfam02414, Borrelia_orfA, Borrelia ORF-A	1e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	2e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-04
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	2e-04
pfam11208	132	pfam11208, DUF2992, Protein of unknown function (D	2e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-04
pfam08079	71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	2e-04
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	2e-04
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	2e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
pfam07655	95	pfam07655, Secretin_N_2, Secretin N-terminal domai	2e-04
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	3e-04
TIGR03490	541	TIGR03490, Mycoplas_LppA, mycoides cluster lipopro	3e-04
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	3e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	3e-04
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	3e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	3e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	3e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	3e-04
pfam07133	164	pfam07133, Merozoite_SPAM, Merozoite surface prote	3e-04
PTZ00470	522	PTZ00470, PTZ00470, glycoside hydrolase family 47	3e-04
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	3e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	4e-04
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	4e-04
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	4e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	4e-04
pfam08079	71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	4e-04
pfam07655	95	pfam07655, Secretin_N_2, Secretin N-terminal domai	4e-04
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	4e-04
pfam05424	276	pfam05424, Duffy_binding, Duffy binding domain	4e-04
PRK05244	177	PRK05244, PRK05244, Der GTPase activator; Provisio	4e-04
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	5e-04
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	5e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-04
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	5e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
pfam09468	287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	5e-04
pfam07741	95	pfam07741, BRF1, Brf1-like TBP-binding domain	5e-04
pfam10659	98	pfam10659, Trypan_glycop_C, Trypanosome variant su	5e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	5e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	5e-04
pfam13166	713	pfam13166, AAA_13, AAA domain	5e-04
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	5e-04
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	6e-04
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	6e-04
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	6e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	6e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	6e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	6e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-04
pfam13166	713	pfam13166, AAA_13, AAA domain	6e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	6e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	6e-04
pfam09736	141	pfam09736, Bud13, Pre-mRNA-splicing factor of RES	6e-04
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	7e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	7e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	7e-04
PTZ00470	522	PTZ00470, PTZ00470, glycoside hydrolase family 47	7e-04
pfam05424	276	pfam05424, Duffy_binding, Duffy binding domain	7e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	7e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	7e-04
pfam00183	529	pfam00183, HSP90, Hsp90 protein	7e-04
pfam01757	326	pfam01757, Acyl_transf_3, Acyltransferase family	7e-04
pfam14303	147	pfam14303, NAM-associated, No apical meristem-asso	7e-04
pfam07808	238	pfam07808, RED_N, RED-like protein N-terminal regi	7e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	8e-04
pfam04615	728	pfam04615, Utp14, Utp14 protein	8e-04
pfam07890	132	pfam07890, Rrp15p, Rrp15p	8e-04
pfam05501	122	pfam05501, DUF755, Domain of unknown function (DUF	9e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.001
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	0.001
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	0.001
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.001
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.001
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.001
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.001
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	0.001
pfam11208	132	pfam11208, DUF2992, Protein of unknown function (D	0.001
PHA03089	191	PHA03089, PHA03089, late transcription factor VLTF	0.001
PTZ00053	470	PTZ00053, PTZ00053, methionine aminopeptidase 2; P	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
pfam08079	71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	0.001
pfam08079	71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	0.001
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	0.001
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
pfam07655	95	pfam07655, Secretin_N_2, Secretin N-terminal domai	0.001
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.001
pfam07133	164	pfam07133, Merozoite_SPAM, Merozoite surface prote	0.001
PTZ00470	522	PTZ00470, PTZ00470, glycoside hydrolase family 47	0.001
PRK05244	177	PRK05244, PRK05244, Der GTPase activator; Provisio	0.001
pfam10659	98	pfam10659, Trypan_glycop_C, Trypanosome variant su	0.001
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	0.001
pfam00183	529	pfam00183, HSP90, Hsp90 protein	0.001
pfam14303	147	pfam14303, NAM-associated, No apical meristem-asso	0.001
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.001
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.001
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.001
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.001
pfam13904	261	pfam13904, DUF4207, Domain of unknown function (DU	0.001
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	0.001
pfam06102	168	pfam06102, DUF947, Domain of unknown function (DUF	0.001
COG5163	591	COG5163, NOP7, Protein required for biogenesis of	0.001
pfam08701	80	pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase	0.001
pfam14204	93	pfam14204, Ribosomal_L18_c, Ribosomal L18 C-termin	0.001
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	0.001
pfam05178	99	pfam05178, Kri1, KRI1-like family	0.001
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.001
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.002
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.002
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.002
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.002
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.002
pfam11208	132	pfam11208, DUF2992, Protein of unknown function (D	0.002
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.002
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	0.002
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.002
pfam02414	285	pfam02414, Borrelia_orfA, Borrelia ORF-A	0.002
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	0.002
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	0.002
PTZ00470	522	PTZ00470, PTZ00470, glycoside hydrolase family 47	0.002
pfam13166	713	pfam13166, AAA_13, AAA domain	0.002
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	0.002
cd09270	211	cd09270, RNase_H2-B, Ribonuclease H2-B is a subuni	0.002
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	0.002
pfam04557	83	pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthe	0.002
pfam03247	106	pfam03247, Prothymosin, Prothymosin/parathymosin f	0.002
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.002
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	0.002
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.002
cd13156	152	cd13156, KOW_RPL6, KOW motif of Ribosomal Protein	0.002
COG5182	429	COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA	0.002
PRK13914	481	PRK13914, PRK13914, invasion associated secreted e	0.002
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.003
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.003
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.003
pfam11671	146	pfam11671, Apis_Csd, Complementary sex determiner	0.003
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	0.003
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.003
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
pfam07655	95	pfam07655, Secretin_N_2, Secretin N-terminal domai	0.003
pfam07741	95	pfam07741, BRF1, Brf1-like TBP-binding domain	0.003
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	0.003
COG5163	591	COG5163, NOP7, Protein required for biogenesis of	0.003
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.003
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	0.003
COG3078	169	COG3078, COG3078, Uncharacterized protein conserve	0.003
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	0.003
COG1498	395	COG1498, SIK1, Protein implicated in ribosomal bio	0.003
pfam12923	131	pfam12923, RRP7, Ribosomal RNA-processing protein	0.003
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.004
TIGR03490	541	TIGR03490, Mycoplas_LppA, mycoides cluster lipopro	0.004
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.004
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	0.004
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
pfam08079	71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	0.004
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	0.004
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	0.004
pfam09468	287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	0.004
pfam09468	287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	0.004
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.004
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	0.004
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	0.004
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.004
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.004
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	0.004
pfam03247	106	pfam03247, Prothymosin, Prothymosin/parathymosin f	0.004
pfam12923	131	pfam12923, RRP7, Ribosomal RNA-processing protein	0.004
pfam03343	603	pfam03343, SART-1, SART-1 family	0.004
pfam14058	136	pfam14058, PcfK, PcfK-like protein	0.004
COG5116	926	COG5116, RPN2, 26S proteasome regulatory complex c	0.004
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.004
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	0.004
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	0.004
pfam09831	177	pfam09831, DUF2058, Uncharacterized protein conser	0.004
pfam06024	101	pfam06024, DUF912, Nucleopolyhedrovirus protein of	0.004
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	0.004
pfam02349	81	pfam02349, MSG, Major surface glycoprotein	0.004

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  180 bits (458), Expect = 1e-50
 Identities = 94/341 (27%), Positives = 160/341 (46%), Gaps = 15/341 (4%)

Query: 101 VLVLTYVAEITQPHLRGMLSATASMTTIFG-------TVSQLFLGSFLHWRSAAILNLLF 153
            LV  Y++EI    LRG L++   +   FG          ++ L + L WR    L L+ 
Sbjct: 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP 205

Query: 154 PILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDK-VQTELSQITKAIEESEL 212
             L    L+F+PESP WL+ +GR++EA  SL  LRG    DK +  EL  I       E 
Sbjct: 206 AGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIK-RSIEK 264

Query: 213 KRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESI-HAPLD 271
           + +               R       +   L +  QF G+  +  Y+  IFE+   +   
Sbjct: 265 RSVQPSWGSL----FSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH 320

Query: 272 PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVY-AQFHLSYGWD 330
            +  ++++G        + + L+   G+RPL LI   G A C  V+ +  A F       
Sbjct: 321 AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS 380

Query: 331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYY 390
           S  V  VF++L      +    +PW+++ E+FP ++R      + +++++  F V  L+ 
Sbjct: 381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFP 440

Query: 391 PMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDI 431
            ML++  + G   F+  ++V+G +++YF +PET+GRTL +I
Sbjct: 441 TMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  164 bits (416), Expect = 8e-45
 Identities = 91/343 (26%), Positives = 159/343 (46%), Gaps = 21/343 (6%)

Query: 101 VLVLTYVAEITQPHLRGMLSATASMTTIFGT-VSQLF------LGSFLHWRSAAILNLLF 153
           VLV  Y++EI    LRG L +   +   FG  V+ +         +   WR    L  + 
Sbjct: 120 VLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVP 179

Query: 154 PILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELK 213
            IL L  L F+PESP WL+ +G+++EA A L  LRG    D+         +  EE +  
Sbjct: 180 AILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQ---------EIQEEKDSL 230

Query: 214 RLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPY 273
               + ++     ++  +T      +   L    Q  G+  +  Y+  IFE++    D  
Sbjct: 231 ERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLG-LSDSL 289

Query: 274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV-YAQFHLSYGWDSP 332
             T+++GV       + + L+   G+RPL L+   G A CF+V+ V       S G    
Sbjct: 290 LVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAG-- 347

Query: 333 LVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPM 392
           +V  VF++L      +    +PW+++ E+FP  +R  A   + +++++  F +  L+  +
Sbjct: 348 IVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPII 407

Query: 393 LDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHF 435
                       +A + V+  L+++F +PET+GRTL +I+E F
Sbjct: 408 TGAIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  127 bits (321), Expect = 1e-31
 Identities = 95/366 (25%), Positives = 167/366 (45%), Gaps = 63/366 (17%)

Query: 106 YVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLH------------WR----SAAIL 149
           Y+AEI   H+RG L +      IFG +   F+  F+             WR    S AI 
Sbjct: 144 YIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIP 203

Query: 150 NLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEE 209
            LLF +L    LYF+PE+P +L+S+G+ ++A   L  + G          L +I  +++ 
Sbjct: 204 ALLFLML----LYFVPETPRYLMSRGKQEQAEGILRKIMG---NTLATQALQEIKHSLDH 256

Query: 210 SELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAP 269
                           ++ M    ++   ++ S+F   QF G+  +  YA  IF+++ A 
Sbjct: 257 GRKT----------GGKLLMFGVGVIVIGVMLSVF--QQFVGINVVLYYAPEIFKTLGAS 304

Query: 270 LD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSA--ACFIVVAVYAQFHLS 326
            D     T+++GV  L   +L ++ +   G++PL +I   G A     +  A Y Q    
Sbjct: 305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--- 361

Query: 327 YGWDSPLVPTVFLVL--AAFLTH---ICIRLLPWMLIGEVFPNNIRATASGASGSSSYIF 381
                 +V  + ++   AAF      +C     W+L+ E+FPN IR  A   + ++ +I 
Sbjct: 362 ----PGIVALLSMLFYVAAFAMSWGPVC-----WVLLSEIFPNAIRGKALAIAVAAQWIA 412

Query: 382 AFAVNKLYYPMLD-------TFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEH 434
            + V+  + PM+D        FH   + + Y  + V+  L+M+  +PET+G+TL ++E  
Sbjct: 413 NYFVSWTF-PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471

Query: 435 FADKGK 440
           +  + K
Sbjct: 472 WEPETK 477

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 13/191 (6%)

Query: 233 FLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIH--APLDPYFATLLLGVAELGGALLC 290
           FLL   ++ +L F     G   L TY     + +   +  +      L G+  + GALL 
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231

Query: 291 VVLIHYTGKRP-LALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHIC 349
            +L    G+R  L LI    +A   +++A+     L        V  + L          
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL------VALLLLGFGLGFAFPA 285

Query: 350 IRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAIS 409
           +      L  E+ P   R TASG   +   +       L   +LDT    G     AA++
Sbjct: 286 L----LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA 341

Query: 410 VVGTLYMYFVM 420
           ++  L +  + 
Sbjct: 342 LLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 76.6 bits (189), Expect = 8e-15
 Identities = 80/332 (24%), Positives = 123/332 (37%), Gaps = 64/332 (19%)

Query: 124 SMTTIFGTVSQLF--LGSFL---------HWRSAAILNLL--FPILALCALY-FIPESPH 169
               I GT+ Q+F  LG  L          WR    L L    P      L  F+PESP 
Sbjct: 212 KQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWR---WLQLAVSLPTFLFFLLSWFVPESPR 268

Query: 170 WLISQGRMQEASASLCWLRGWVTPDKVQ-TELSQITKAIEESELKRLG--KDGQRRPNYR 226
           WLISQGR++EA   L   R      K    E+  ++   + S  K+     D  R PN R
Sbjct: 269 WLISQGRIEEALKIL--QRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLR 326

Query: 227 MYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGG 286
              + T  L     T+ F    +G +  L      +  +I      Y    + G+ EL  
Sbjct: 327 ---KTTLCLMMLWFTTAF--SYYGLVLDLG----NLGGNI------YLDLFISGLVELPA 371

Query: 287 ALLCVVLIHYTGKR-PLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLA-AF 344
            L+ ++LI   G+R  +A        A  +++ V     +   +    + T   VL    
Sbjct: 372 KLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV----PVDLYF----LRTALAVLGKFG 423

Query: 345 LT--HICIRLLPWMLIGEVFPNNIRATA----SGASGSSSYIFAFAVNKLYYPMLDTFHL 398
           +T     +    ++   E++P  +R       S  +   S I  F V      +     L
Sbjct: 424 ITSAFQMV----YLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVL 479

Query: 399 WGTLYFYAAISVVGTLYMYFVMPETEGRTLRD 430
           +G L   A I  +        +PET+G  L +
Sbjct: 480 FGGLALLAGILTLF-------LPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 57/295 (19%), Positives = 90/295 (30%), Gaps = 63/295 (21%)

Query: 96  MAAPLVLVLTYVAEITQPHLRGM----LSATASMTTIFGTVSQLFLGSFLHWRSAAILNL 151
             A        +A+   P  RG     LSA   +    G +    L S   WR+A ++  
Sbjct: 99  GGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILA 158

Query: 152 LFPILALC---ALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIE 208
           +  +LA      L   P              A     W                      
Sbjct: 159 ILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK--------------------- 197

Query: 209 ESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHA 268
                               + R  +L   +   LF    F  +T L  Y     E +  
Sbjct: 198 -------------------LLLRDPVLWLLLALLLFGFAFFALLTYLPLYQ----EVLG- 233

Query: 269 PLDPYFATLLLGVAELGGALLCVV---LIHYTGKRPLALISTGGSAACFIVVAVYAQFHL 325
            L    A LLLG+A L GA+  ++   L    G+R   L++        + +A+ +    
Sbjct: 234 -LSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTES 292

Query: 326 SYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYI 380
           S      LV  + L   A L    +      L+ ++ P   R TASG   ++  +
Sbjct: 293 SLWL---LVALLLLGFGAGLVFPAL----NALVSDLAPKEERGTASGLYNTAGSL 340

Length = 346

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNN 69
           KK  K  KK   K+A+KKEK+KEK K +K+ +  K   K++  +  +  
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434

Length = 434

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           ++ K+K+KKK+ KK KK++K K++K  E K  KKKKKKKKK
Sbjct: 152 EEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K   +K+  K  KK   K  +K++K+KEK K KK+ +  K 
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKN 421

Length = 434

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 23/51 (45%), Positives = 35/51 (68%)

Query: 11  TFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           T       + ++ +KKEKKKK++  K+K++KK+KK+K  + K  KKKKKKK
Sbjct: 140 TAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKK 190

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 24/41 (58%), Positives = 32/41 (78%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           ++ KK++KKKKE K +KKEKK +K+K  + K  KKKKKKKK
Sbjct: 151 EEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKK 191

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKK 59
           K+ KKK++ KKEKK KK +K+K  + K  KKKKKKKKKK
Sbjct: 155 KEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 21/189 (11%)

Query: 239 IVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVV---LIH 295
           ++  L F         L      + E +   L    A L++    LG AL  ++   L  
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAEDLG--LSASQAGLIVSAFSLGYALGSLLAGYLSD 59

Query: 296 YTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHI---CIRL 352
             G+R + L+     A   +++A    F  S            L++  FL  +    +  
Sbjct: 60  RFGRRRVLLLGLLLFALGSLLLA----FASSLWL---------LLVGRFLLGLGGGALYP 106

Query: 353 LPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVG 412
               LI E FP   R  A G   +   + A     L   + ++          A + ++ 
Sbjct: 107 AAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL 166

Query: 413 TLYMYFVMP 421
            L + F++ 
Sbjct: 167 ALLLLFLLR 175

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)

Query: 19  DWKKAKKKE--KKKKEKKAKKKEKKKEKK--KKEKKKKKKKKKKKKKNNNNNNNNNNNNN 74
            WKK  + E  ++K+E+K +K E+K  KK  K++KKK+KKKKKKK K  N       + +
Sbjct: 58  KWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKS 117

Query: 75  NNNNNNNNNNNNEEK 89
           +  +++      E+K
Sbjct: 118 SEESSDEEEEGEEDK 132

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 2   DSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEK-----KKKKKKK 56
            S ++      T     + +  ++++K+KK+KK  KKEKK++K KKEK       KKKKK
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188

Query: 57  KKKKK 61
           KKKKK
Sbjct: 189 KKKKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 57/281 (20%), Positives = 97/281 (34%), Gaps = 44/281 (15%)

Query: 105 TYVAEITQPHLRGMLSATASMTTIF--GTVSQLFLGSFL----HWRSAAILNLLFP-ILA 157
             V+E      RG  +A   M   +  G     FL  +L     WRS   +  + P +L 
Sbjct: 128 ALVSEYAPKRFRG--TAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185

Query: 158 LCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGK 217
           L  + F+PES  +L+S+                  P+ V+  ++ I   ++      L +
Sbjct: 186 LLLMRFLPESIDFLVSKR-----------------PETVRRIVNAIAPQMQAEAQSALPE 228

Query: 218 DGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGI---FESIHAPLDPYF 274
               +   R   +  F    A +T L ++  F  M  +  Y +        +        
Sbjct: 229 QKATQGTKRSVFKALFQGKTARITVLLWLLYF--MLLVGVYFLTNWLPKLMVELGFSLSL 286

Query: 275 ATLLLGVAELGGALLCVV---LIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDS 331
           A     +   GG +  ++   L    G R  AL+   G+      V V +         S
Sbjct: 287 AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAV---FAVLVGSTLF------S 337

Query: 332 PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASG 372
           P +  +   +A F  +     L   L+   +P  IRAT  G
Sbjct: 338 PTLLLLLGAIAGFFVNGGQSGLY-ALMALFYPTAIRATGVG 377

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 14  EPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNN 66
            P+     K  KK   K+ +K +K+++K + KK+ +  K   K++K    +  
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 25  KKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNN 65
           K   +KK  K  KK   K  +KKEK+K+K K KK+ ++  N
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKN 421

Length = 434

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 19/44 (43%), Positives = 31/44 (70%)

Query: 22  KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNN 65
           + +   K +KE + +++EKK++KKKKE KK+KK+KK KK+    
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVE 179

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
           ++ K+K+++K  KK  K++KKK+KKKK KKK KK  KK++K  + ++  +++       +
Sbjct: 73  EEKKRKDEEKTAKKRAKRQKKKQKKKK-KKKAKKGNKKEEKEGSKSSEESSDEEEEGEED 131

Query: 81  NNNNNNEEKG 90
                 E   
Sbjct: 132 KQEEPVEIME 141

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 58/345 (16%), Positives = 102/345 (29%), Gaps = 88/345 (25%)

Query: 101 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQL-------FLGSFLHWRSAAILNLLF 153
            +     A +  P  RG   A A + T   T++ +       FLG    WR+       F
Sbjct: 120 SIAAALAARLVPPGKRG--RALALVFTGL-TLATVLGVPLGTFLGQLFGWRAT------F 170

Query: 154 PILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELK 213
             +A+ AL                     +L  L   + P       S+I+ ++      
Sbjct: 171 LAIAVLAL--------------------LALLLLWKLLPP-------SEISGSLPGPLRT 203

Query: 214 RLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPY 273
            L             +RR  +L   + T LF  G F   T ++ +   +           
Sbjct: 204 LLRL-----------LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAG-----FSVS 247

Query: 274 FATLLL---GVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD 330
             +L+L   G+A   G LL   L    G R   + +    A   + +             
Sbjct: 248 AVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGA-------- 298

Query: 331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASG-------ASGSSSYIFAF 383
           SP +    L L  F     ++ L    +  + P+      S             + +   
Sbjct: 299 SPALALALLFLWGFAFSPALQGL-QTRLARLAPDAADLAGSLNVAAFNLGIALGAALGG- 356

Query: 384 AVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTL 428
                   +LD      T +   A  ++  L +  +    + RT 
Sbjct: 357 -------LVLDALGYAATGWV-GAALLLLALLLALLSARKDRRTA 393

Length = 394

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 22/42 (52%), Positives = 32/42 (76%)

Query: 20  WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           WK+ K+K +KKK ++ KK+E+  +K+K +KK KKKKK KKK 
Sbjct: 162 WKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKG 203

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72 family

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 31 KEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEEK 89
              +K+ EKK E K  E   K  KK   K+ + NNNN +NN N +  N ++ N  ++ 
Sbjct: 27 TSSNSKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKP 85

Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa. Length = 541

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 15/41 (36%), Positives = 28/41 (68%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           KK K+  KK++     ++E+ KE+ +KEK+ +K ++KK K+
Sbjct: 83  KKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKR 123

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           K+ ++K+K K +KK  KK+K K+K KK+ KK  K +KK +K 
Sbjct: 76  KEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKE 117

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 20/38 (52%), Positives = 28/38 (73%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
           +K  K+  K+K K+ K+K+KKK+KKKK+  KK  KKKK
Sbjct: 98  QKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135

Length = 135

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 24  KKKEKKKK-EKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNN 82
           K++EKK+K E+K  KK  K++KKK++KKKKKK KK  KK     + ++  +++       
Sbjct: 71  KREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEE 130

Query: 83  NNNNEE 88
           +   E 
Sbjct: 131 DKQEEP 136

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 20  WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            +K K K+KK K+KK K K+KK +KK  + +KK +K+ + K 
Sbjct: 81  KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 25 KKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNN 84
          KK+KKKK+K +K+     +  KK        ++KK+ N     NN   N + +++  N+N
Sbjct: 9  KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGTNESQSSSTQNSN 68

Query: 85 NNEE 88
           NEE
Sbjct: 69 KNEE 72

Length = 479

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 11  TFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKK 56
              E TP D +  K  EKK K+KK  + +K+++KKKKEKKKKKK+ 
Sbjct: 125 PLPEETPSDSEGLKGHEKKHKKKK-HEDDKERKKKKKEKKKKKKRH 169

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 20  WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNN 66
           WK  KKK KKKK+K   KK+ KK+ K ++K +K+ + K +    + +
Sbjct: 84  WKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYS 130

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 22/36 (61%), Positives = 29/36 (80%)

Query: 26  KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           KEK  K  K K++EKK +K+KK+KK+KKK KK+KKK
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKK 411

Length = 414

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           KKA KK KK  EK  KK+E++K++KKK+    KKK++++++
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEE 446

Length = 482

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 25  KKEKKKKEKKAKKKEK-KKEKKKKEKKKKK--KKKKKKKKNNNNNNNNNNNNNNNNNNNN 81
           KKE + +E + K++EK +K+++K  KK+ K  KKK+KKKK       N       + ++ 
Sbjct: 60  KKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSE 119

Query: 82  NNNNNEEKG 90
            +++ EE+G
Sbjct: 120 ESSDEEEEG 128

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 19/66 (28%), Positives = 35/66 (53%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
           +K ++K  KK+ K+ KKK+KKK+KKK +K  KK++K+  K +  +++       +     
Sbjct: 77  RKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEP 136

Query: 81  NNNNNN 86
                 
Sbjct: 137 VEIMEK 142

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
           +K K K KKKK KK K K+K K+  KK+ K +KK +K+ +
Sbjct: 80  EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 26  KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNN 68
           K K   EKK  K  KK   K+ EKK+K+K+K K KK + +  N
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKN 421

Length = 434

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNN 66
           K+   K +++   ++E+KKEKKKK++ KK+KK+KK KK     
Sbjct: 137 KETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVE 179

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 25 KKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
          KKE K  EK  KK EK K K +K+K KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           KK +KK ++K EKKA+K+E +K   KK+ +   KK K     
Sbjct: 412 KKLRKK-QRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 10/46 (21%), Positives = 25/46 (54%)

Query: 22  KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNN 67
           KAK + ++ +++  K++   +++K   +++K K K  +KK      
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQ 152

Length = 213

>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein

 Score = 46.3 bits (109), Expect = 5e-06
 Identities = 16/68 (23%), Positives = 44/68 (64%)

Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNN 79
          + +++++E+K  + +   +E ++  +++ + + ++++ ++ K  ++ +N +NN N NNN 
Sbjct: 6  YSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHKIISSLSNLSNNYNYNNNY 65

Query: 80 NNNNNNNE 87
          NN NN N+
Sbjct: 66 NNYNNYNK 73

This family of proteins represents the complementary sex determiner in the honeybee. In the honeybee, the mechanism of sex determination depends on the csd gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development. Length = 146

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 20/38 (52%), Positives = 29/38 (76%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           +K  K  K+K+ +KK +K++KKKK KKK KK+KKK +K
Sbjct: 377 EKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992)

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 16/35 (45%), Positives = 29/35 (82%)

Query: 27  EKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           E+ K+EKK + KEKK+E+K+++++ K++KKK K +
Sbjct: 96  ERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130

This bacterial family of proteins has no known function. However, the cis-regulatory yjdF motif, just upstream from the gene encoding the proteins for this family, is a small non-coding RNA, Rfam:RF01764. The yjdF motif is found in many Firmicutes, including Bacillus subtilis. In most cases, it resides in potential 5' UTRs of homologues of the yjdF gene whose function is unknown. However, in Streptococcus thermophilus, a yjdF RNA motif is associated with an operon whose protein products synthesise nicotinamide adenine dinucleotide (NAD+). Also, the S. thermophilus yjdF RNA lacks typical yjdF motif consensus features downstream of and including the P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the S. thermophilus RNAs might sense a distinct compound that structurally resembles the ligand bound by other yjdF RNAs. On the ohter hand, perhaps these RNAs have an alternative solution forming a similar binding site, as is observed with some SAM riboswitches. Length = 132

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 22/57 (38%), Positives = 26/57 (45%)

Query: 13  TEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNN 69
            EPTP   K+  K EKK K+ K K K K K K K + + K KK   K         N
Sbjct: 77  PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPN 133

Length = 244

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 10/40 (25%), Positives = 26/40 (65%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
           K++   +  ++  K+  +KEK+ ++ ++KK K+++K+K  
Sbjct: 91  KRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K   KK+K KK+K   K +K  +K  K +KK +K+ + K +
Sbjct: 83  KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           K+  K +KKK +KK  K + KK+ KK +K +KK +K+ + K 
Sbjct: 81  KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNN 83
          KKK+KKKK+   +     +  KK        ++KK+       NN   N + +++  N+N
Sbjct: 9  KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGTNESQSSSTQNSN 68

Query: 84 NNNE 87
           N E
Sbjct: 69 KNEE 72

Length = 479

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 20/38 (52%), Positives = 29/38 (76%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
           +K  K  KKK+E+K  +K KKK+K+KK+ KK+KKK +K
Sbjct: 377 EKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein

 Score = 45.9 bits (108), Expect = 7e-06
 Identities = 16/67 (23%), Positives = 41/67 (61%)

Query: 23 AKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNN 82
          ++ +E+++K  K +   ++  +  +E+ + + ++++ +++   ++ +N +NN N NNN N
Sbjct: 7  SRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHKIISSLSNLSNNYNYNNNYN 66

Query: 83 NNNNEEK 89
          N NN  K
Sbjct: 67 NYNNYNK 73

This family of proteins represents the complementary sex determiner in the honeybee. In the honeybee, the mechanism of sex determination depends on the csd gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development. Length = 146

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)

Query: 25  KKEKK--KKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
            +E+K  K+  K K K+KK++KKKK+KKKKK  KK  KK 
Sbjct: 95  VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134

Length = 135

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKK 59
           K+   K  KKK ++ K +++KK+KK+K+K KK+KKK +K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 18/49 (36%), Positives = 35/49 (71%)

Query: 13  TEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            + T    K  +K EKK++E+K +KK+K    KKKE++++++K+KK+++
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454

Length = 482

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 22  KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNN 64
            A++K+ +KK++KA+KK +K+E +K   KKK +   KK K  +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 19 DWKKAKKKEKKK-KEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           W + + +EK++ K K A K + KK  K K ++K+K K++K++K
Sbjct: 36 SWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEK 79

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 16  TPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNN 68
            P + +K +K+  K+ E+K   K KK++K+KKEKK  +K  KKK      N  
Sbjct: 91  FPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTT 143

Length = 158

>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 17  PLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNN 76
           P D +   KK  KKK+   +KK+  K+ KKK+K+K++  +   ++ +++  N  N+   +
Sbjct: 40  PEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVD 99

Query: 77  NN-----NNNNNNNNEE 88
                  N     N+E+
Sbjct: 100 YELPKVQNTAAEVNHED 116

Length = 191

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 13  TEPTPLDWKK---AKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
            E T    KK   A++ EK KKE + K+K K K+KK K+KK K K KK  KK++
Sbjct: 55  AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDD 108

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 33/65 (50%)

Query: 22 KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNN 81
          K KKK+KKK  K++    +  +K        ++KK+  ++   NN   N + +++  N+N
Sbjct: 9  KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGTNESQSSSTQNSN 68

Query: 82 NNNNN 86
           N  N
Sbjct: 69 KNEEN 73

Length = 479

>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
          KK KKK+K  KE     +  KK        ++KK+  ++   NN   N + +++  N+N 
Sbjct: 10 KKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGTNESQSSSTQNSNK 69

Query: 81 NNNN 84
          N  N
Sbjct: 70 NEEN 73

Length = 479

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 31/43 (72%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
           ++  K+ ++ KEK  K  +KK+E+KK +K+KKKKK+KKK K  
Sbjct: 366 EELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKR 408

Length = 414

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 5   TKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           T+ +I   T       K  K  EK +K+++ +KKEKKK+    +KK+++++++K+KK
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKK 451

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 34/42 (80%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           K  KK+E++KKEKK K    KK+++++E++K+KK+++K+++ 
Sbjct: 418 KAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459

Length = 482

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 30 KKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
          KKE KA +K +KK +K K K +KKK KK++ K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           KK +K EKK ++++A+K   KK+ +   KK K    + KK +
Sbjct: 416 KKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVD 457

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
          +K+ K E   +E +   +E+ +++ ++E+ ++ K        +NN N NNN NN NN N 
Sbjct: 14 QKSYKNENSYREYRETSRERSRDRTERERSREHKIISSLSNLSNNYNYNNNYNNYNNYNK 73

Query: 81 NNNNNN 86
          +  N N
Sbjct: 74 HYYNIN 79

This family of proteins represents the complementary sex determiner in the honeybee. In the honeybee, the mechanism of sex determination depends on the csd gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development. Length = 146

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNN 65
           + K++EK K   KAK K+  K K ++++K K++K++K  +    
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 9   IGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNN 64
           I  F E +  + K+  K+ ++K+  KAKK++K+K++KK  +K  KKK  K  KN  
Sbjct: 88  INLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTT 143

Length = 158

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 249 FGGMTTLQTYAVGIFESIH-APLDPYFATLLLGVAELGGALLCVVLIH--YTGKR-PLAL 304
            G +     Y     +    +     +A  L  +  L G LL   L    + G+R PLA+
Sbjct: 233 TGILDWSPLYL---TQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAV 289

Query: 305 ISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPN 364
                     I+V++   +       +PL+  + L    FL +    +L  ++  E+ P 
Sbjct: 290 F-----FMALIIVSLLVYWLNPAA--NPLMDLICLFALGFLVYGPQ-MLIGVIASELAPK 341

Query: 365 NIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTL 402
               TA+G  G  +Y+           + D F   G  
Sbjct: 342 KAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 22 KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNN 70
          + + K      KK KK++K  E KKK +KKKKKKK+KK+  +       
Sbjct: 44 EEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLG 92

Length = 413

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 13/41 (31%), Positives = 28/41 (68%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           KK +   + ++E+  ++ EK+K  +K  +KK K+++K+K+K
Sbjct: 90  KKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 23  AKKKEKKKKEKKAKKKEKKKEKKKKEKK-KKKKKKKKKKKN 62
            K+K K KK+K  KKK+K K+KK  +K  K +KK +K+ ++
Sbjct: 80  EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 19/39 (48%), Positives = 30/39 (76%)

Query: 22  KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
           K K  +  KK+++ KK +K+K+KKK++KK KK+KKK +K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNN 74
            ++KKK +KKK+KK +KKE K E + K   K  KK KK KK       N + +N
Sbjct: 64  NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDN 117

Length = 413

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 19/38 (50%), Positives = 29/38 (76%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K+K  K  +KK ++K+ +K KKKK++KKK KK+KKK +
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGR 413

Length = 414

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 15/41 (36%), Positives = 35/41 (85%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           +KA+KK +++K++K KK    K+K+++E+++K+KK+++K++
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457

Length = 482

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
            K K K +KK+E+K  + EK  +   +EK + + +K +K+
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 5   TKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
            KH      E      KK K+K   KK + A +  +++ K++ EK+K+ +K ++KK
Sbjct: 65  KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKK 120

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 17  PLDWKKAK-KKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
            L  +  K KKE ++K+K   KK+K K+KK K+K KK  KK  K +  
Sbjct: 66  ELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 26  KEKKK--KEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
            E++K  K+   +K ++KK+KKKK+KKKKKK  KK  K  
Sbjct: 95  VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134

Length = 135

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 16/43 (37%), Positives = 32/43 (74%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
              K ++K+++EKK KKK+    KKK+E+++++K+KK+++K  
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457

Length = 482

>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK------KKKNNNNNNNNNNNNNNNN 77
              E  + E K +K++ K++  KK+ KK KK          +  + N    N  NN    
Sbjct: 1   AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60

Query: 78  NNNNNNNNNEEKGTFLYKMAAPLVLVLTYVAEITQPHLR 116
                           Y +A  L +V +  A     H+R
Sbjct: 61  KKKKKKKKKNLGEA--YDLAYDLPVVWSSAAFQDNSHIR 97

Length = 470

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 14  EPTPLDWKKAKKKEKKKKEKKAKKKEKKKEK-------KKKEKKKKKKKKKKKKKNNNNN 66
           E       K + KEK+  ++K K+KEKK E+       KK+E+ + K + KK  K    N
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPN 185

Query: 67  N 67
            
Sbjct: 186 K 186

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 45/281 (16%), Positives = 73/281 (25%), Gaps = 55/281 (19%)

Query: 96  MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLH----WRSAAILNL 151
             A        +AE   P  RG      S     G +    LG  L     WR   ++  
Sbjct: 101 GGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160

Query: 152 LFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESE 211
           +  +L    L F+      L+       A A      G+     + T L    + +    
Sbjct: 161 ILGLLLALLLLFLL--RLLLLL------ALAFFLLSFGYYG---LLTYLPLYLQEVLGLS 209

Query: 212 LKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGM---------------TTLQ 256
               G                 L  + +   L  +   GG+                 L 
Sbjct: 210 AAEAG---------------LLLSLFGLGGILGAL--LGGLLSDRLGRRRLLLLIGLLLA 252

Query: 257 TYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLI------HYTGKRPLALISTGGS 310
              + +     +      A LLLG          + L          G     L +T GS
Sbjct: 253 ALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTA-SGLFNTFGS 311

Query: 311 AACFIVVAVYAQFHLSYGWDSP-LVPTVFLVLAAFLTHICI 350
               +   +      + G+    L+     +LAA L  +  
Sbjct: 312 LGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 13/39 (33%), Positives = 25/39 (64%)

Query: 23 AKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
          AK+K K +K+++ KK E +K  K   ++K + + +K +K
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEK 56

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           KKAK++ KK+ E++AK K   + KKK  + KKK + + K K 
Sbjct: 142 KKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKA 183

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
              +KK +KK+ K  KK EK++ +K   KKK +   KK K  +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 13/41 (31%), Positives = 28/41 (68%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           ++A+++ KK++    K+K  ++E+K K K  +KK+K + +K
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQK 153

Length = 213

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 18/41 (43%), Positives = 32/41 (78%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            ++ K+E+K+KE+  ++K+KKKEK K+E K +K K++ K+K
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 29  KKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEE 88
             ++K+  +   K  K+KK ++ KK+     KK +N N +   N   NN NN  N   +E
Sbjct: 86  NYQKKECYEIINKYFKEKKIERFKKRVNAYFKKKSNKNGSVEKNECINNKNNVINKKIKE 145

Query: 89  K 89
           +
Sbjct: 146 E 146

This protein is encoded by an open reading frame in plasmid borne DNA repeats of Borrelia species. This protein is known as ORF-A. The function of this putative protein is unknown. Length = 285

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 22  KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K + +EK+K + K KK +KKK+K K +K  KK  K +KK 
Sbjct: 75  KKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 28  KKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           K+K  K  KKK ++K+ +K++KKKK+KKK KK+K 
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKK 410

Length = 414

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           KK  KK K+   K ++K++E+KK++KKK    KKK+++ 
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEE 444

Length = 482

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           +K ++K +KK EK+  +K   K+K +   KK K    + KK
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 29  KKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEE 88
           +   KK  KK+K   +KKK  KK KKKKK+K++         +++  N  N+   +    
Sbjct: 44  EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELP 103

Query: 89  K 89
           K
Sbjct: 104 K 104

Length = 191

>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 11  TFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNN 70
            F E   +  KK  KK+K    KK   K+ KK+KK+KE+  +   ++      N  N+  
Sbjct: 38  IFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKK 97

Query: 71  NNNNNNNNNNNNNNNNEE 88
            +       N     N E
Sbjct: 98  VDYELPKVQNTAAEVNHE 115

Length = 191

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 11  TFTEPTPLDWKKAKKKEKKKK--EKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNN 68
             T  T  D K+ K  E KKK  +KK KKKEKK+ K + E K   K  KK KK       
Sbjct: 49  VATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPK 108

Query: 69  NNNNNNNNNNNNNNNNNNEEKGTFL 93
              N + +N  N      E+   ++
Sbjct: 109 PKPNEDVDNAFNKIAELAEKSNVYI 133

Length = 413

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 27/49 (55%)

Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNN 68
          W+K ++++K + EK AK   ++K + + EK +K+ ++ + +        
Sbjct: 24 WEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKA 72

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 14/54 (25%), Positives = 32/54 (59%)

Query: 8   QIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           ++       P    K  K+ K +  K+ +K++++ +++KK+KK+K K++ K +K
Sbjct: 79  RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 15/41 (36%), Positives = 32/41 (78%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           +  ++K+KKK++ K + K++K +++ KEK+  K+K+K+K+K
Sbjct: 112 QVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 30/40 (75%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
           KK KK++ K++ K  K KE+ KEK+  ++K+K+K+KK ++
Sbjct: 117 KKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE 156

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKK-----EKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNN 75
            K    E   K    KK+  +      ++KK E+ KK+     KKK+N N +   N   N
Sbjct: 74  GKNNGTEIYYKLNYQKKECYEIINKYFKEKKIERFKKRVNAYFKKKSNKNGSVEKNECIN 133

Query: 76  NNNNNNNNNNNEEKGTFLYK 95
           N NN  N    EE      K
Sbjct: 134 NKNNVINKKIKEESKKKNSK 153

This protein is encoded by an open reading frame in plasmid borne DNA repeats of Borrelia species. This protein is known as ORF-A. The function of this putative protein is unknown. Length = 285

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 12  FTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
                     +  +KE   K +K  + E++++K+KK+KK+ KK+KK+KK 
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKD 172

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 36/48 (75%)

Query: 14  EPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           E    + KK     KKK+E++ ++KEKK+E+K++E+++ +++K+++++
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471

Length = 482

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 5  TKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKK 51
           K  +            KA +K +KK EK   K EKKK KK++ K +
Sbjct: 54 LKESLEAALLDK--KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992)

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 14/35 (40%), Positives = 28/35 (80%)

Query: 22  KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKK 56
           +  K+EKKK+ K+ K++EK+++++ K++KKK K +
Sbjct: 96  ERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130

This bacterial family of proteins has no known function. However, the cis-regulatory yjdF motif, just upstream from the gene encoding the proteins for this family, is a small non-coding RNA, Rfam:RF01764. The yjdF motif is found in many Firmicutes, including Bacillus subtilis. In most cases, it resides in potential 5' UTRs of homologues of the yjdF gene whose function is unknown. However, in Streptococcus thermophilus, a yjdF RNA motif is associated with an operon whose protein products synthesise nicotinamide adenine dinucleotide (NAD+). Also, the S. thermophilus yjdF RNA lacks typical yjdF motif consensus features downstream of and including the P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the S. thermophilus RNAs might sense a distinct compound that structurally resembles the ligand bound by other yjdF RNAs. On the ohter hand, perhaps these RNAs have an alternative solution forming a similar binding site, as is observed with some SAM riboswitches. Length = 132

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 30/41 (73%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            K +KK+KK+K K+  K  K KE+ K+++  K+K+K+K+KK
Sbjct: 113 VKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            K  K E  K+E+K K++ K+++KKKKEK K++ K +K K+
Sbjct: 95  AKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKE 135

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 17/42 (40%), Positives = 32/42 (76%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           +K KKKEK K+E K +K +++ ++K+  K+K+K+K+KK ++ 
Sbjct: 116 EKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 14/41 (34%), Positives = 31/41 (75%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           ++ +K++ K+++KK K+K K++ K +K K++ K+K+  K+K
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEK 146

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K   + EKK KE+  K+ E++ + K   + KKK  + KKK 
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKA 175

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 21  KKAKKKEKKKKEKKAKKK--EKKKEKKKKEKKKKKKKKKKKKK 61
           K AK+ E+  K+ + K+K  E+ K K+  E K K + + +KK 
Sbjct: 102 KAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKA 144

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 22  KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K   + K K E +A+KK K++ KK+ E++ K K   + KK
Sbjct: 127 KQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKK 166

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 33 KKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
          KK K+ EK + K+ K++  KK  +KKK+K
Sbjct: 4  KKRKRNEKLRAKRAKKRAAKKAARKKKRK 32

This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Length = 71

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 17/41 (41%), Positives = 30/41 (73%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K+  ++EK++KE   ++K  +K KK++EKKKK+ +K +K K
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590

Length = 651

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 9/42 (21%), Positives = 15/42 (35%)

Query: 18  LDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKK 59
              K     +   K+   KK   K  +K K++    +K  K 
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858

Length = 859

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 19/81 (23%), Positives = 30/81 (37%)

Query: 1   MDSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
            +   +  I         D        KKK +  AK    K   KKK K +    KK +K
Sbjct: 49  PEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEK 108

Query: 61  KNNNNNNNNNNNNNNNNNNNN 81
           KN  + +++ N   + +  N 
Sbjct: 109 KNALDKDDDLNYVKDIDVLNQ 129

Length = 509

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.4 bits (104), Expect = 2e-04
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 21   KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
            +  K  E  K E +A   E +  ++K E  +KKK++ KKK
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 21   KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKK----KKKKKKKKK 61
             KA+ +    + + A++K +  EKKK+E KKK    KKK ++KKK
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392

Length = 2084

>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 5/33 (15%), Positives = 24/33 (72%)

Query: 62 NNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLY 94
          + +N++++++N++N  +++++++ +   GT + 
Sbjct: 29 SGSNSSSSSSNSSNGGSSSSSSSGDSSSGTRIT 61

This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggest that this family may be functionally analogous to pfam03958. Length = 95

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 17/39 (43%), Positives = 32/39 (82%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           KK  K+K+++K K K++ KE+K+K +KKK +++KK+++N
Sbjct: 145 KKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKKREEN 183

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72 family

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 28 KKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNE 87
          K+ ++K   K  +   K  K+   K+  +    K+NN N +  N ++ N     + + N+
Sbjct: 32 KQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNK 91

Query: 88 E 88
          E
Sbjct: 92 E 92

Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa. Length = 541

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 11/42 (26%), Positives = 27/42 (64%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
              +K++KKK+++  KK+      +++  K++ +K+K+ +KN
Sbjct: 75  LLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKN 116

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 20  WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            KK  K + KK +KK  K EKK EK+ ++K +   K   +  
Sbjct: 92  KKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 21  KKAKKKEKKKKEKKA------------KKKEKKKEKKKKEKKKKKKKKKKKKKNNNNN 66
           KK K K KK + +              K  EKK +KKK E  K++KKKKK+KK     
Sbjct: 111 KKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKR 168

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 18/66 (27%), Positives = 29/66 (43%)

Query: 2  DSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            S    +      T  + +        KK+KK  K  + K+K +K+KKKKK+KK+ K +
Sbjct: 27 IYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSE 86

Query: 62 NNNNNN 67
                
Sbjct: 87 GETKLG 92

Length = 413

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 21  KKAKKK---EKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           ++AK K   E KKK  +AKKK + + K K E K K K ++ K K 
Sbjct: 154 EEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKA 198

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 24   KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            KK E+ KK  +A K E +    + E  ++K +  +KKK
Sbjct: 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373

Length = 2084

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 13/65 (20%), Positives = 27/65 (41%)

Query: 14  EPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNN 73
           +  P+   K + K K K + K K  +K +E+ K+E K  + +     +N       ++  
Sbjct: 86  KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTA 145

Query: 74  NNNNN 78
               +
Sbjct: 146 TAAAS 150

Length = 246

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 14  EPTPLDWKKAK---KKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNN 70
           EP P   K+A     K + K + K K K K  +K +++ K++ K  + +  +   N    
Sbjct: 79  EPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPA 138

Query: 71  NNNNNNNNNNNN 82
              ++      +
Sbjct: 139 RPTSSTATAAAS 150

Length = 246

>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 33/66 (50%)

Query: 26  KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNN 85
           +E +  E + +  E ++E+++ E+     K  +KK  N+  N+  ++N  N  + N   N
Sbjct: 63  EEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNLISKNYKKN 122

Query: 86  NEEKGT 91
            + K T
Sbjct: 123 EKSKKT 128

This family consists of several Plasmodium falciparum SPAM (secreted polymorphic antigen associated with merozoites) proteins. Variation among SPAM alleles is the result of deletions and amino acid substitutions in non-repetitive sequences within and flanking the alanine heptad-repeat domain. Heptad repeats in which the a and d position contain hydrophobic residues generate amphipathic alpha-helices which give rise to helical bundles or coiled-coil structures in proteins. SPAM is an example of a P. falciparum antigen in which a repetitive sequence has features characteristic of a well-defined structural element. Length = 164

>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 53 KKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLYKMAAP 99
              ++    +NN ++N NNNNNNNN  N+NN N        K+   
Sbjct: 1  NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRG 47

Length = 522

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 25 KKEKKKKEKKAKKKEKKKEKKKKEKKKKK 53
          KKE K   K  KKKEK++ K  K K K +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPR 91

Length = 330

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           KK K K+K KK+ K   K +KK++K+ E K +   K   +  
Sbjct: 92  KKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 22 KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKK 55
          K + K  +K EKKA+K + K EKKK +K++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 21  KKAKKKEKKKKEKKA----KKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
            KAKK++K+KKEKK      KK+  K  K   KK  KK   KK++  
Sbjct: 112 IKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEGK 158

Length = 158

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 16/43 (37%), Positives = 31/43 (72%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
           ++ KKK++K KE+   +K K++ K+K+  K+K+K+K+KK +  
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKK 57
          KK K+ EK + ++  K+  KK  +KKK K   K+ +K
Sbjct: 4  KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEK 40

This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Length = 71

>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 3/30 (10%), Positives = 22/30 (73%)

Query: 62 NNNNNNNNNNNNNNNNNNNNNNNNNEEKGT 91
          ++ +N++++++N++N  +++++++ +    
Sbjct: 28 SSGSNSSSSSSNSSNGGSSSSSSSGDSSSG 57

This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggest that this family may be functionally analogous to pfam03958. Length = 95

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 30 KKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
          KKE KA  K +KK++K++ K  K K K +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPR 91

Length = 330

>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 12/70 (17%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKK------------EKKKKEKKKKKKKKKKKKKNNNNNNN 68
           +K KKK K+KK  K   K+  K            + KKKE  K+KKK KK KK NN  N 
Sbjct: 206 EKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKKRNNKKNY 265

Query: 69  NNNNNNNNNN 78
           ++  +     
Sbjct: 266 SDIKDKYAKE 275

This domain is found in Plasmodium Duffy binding proteins. Plasmodium vivax and Plasmodium knowlesi merozoites invade human erythrocytes that express Duffy blood group surface determinants. The Duffy receptor family is localised in micronemes, an organelle found in all organisms of the phylum Apicomplexa. Length = 276

>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNN 83
           KKK+   K  K   K KKK +++ + + +++K+KKK K   + + +N  N  +       
Sbjct: 1   KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQ 60

Query: 84  NNNEEKGTFLYKMAAPLVLVLTYVAEITQP 113
             +   G+   K   PL +      +  +P
Sbjct: 61  KKDPRIGS---KKPIPLGVEEKVKPKKKKP 87

Length = 177

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 11/53 (20%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEK---------KKKEK--KKKKKKKKKKKKN 62
           KKA K+++K+K+K  K+ +++KEK         KK+E+  KK+K  KK KKK 
Sbjct: 145 KKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKK 197

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 17/55 (30%), Positives = 34/55 (61%)

Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNN 78
          +++ +K++++KA+KK+K+KE KKKE  +K + ++ K + N +        N   N
Sbjct: 9  EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 16/42 (38%), Positives = 37/42 (88%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           +K +++EKK+K+KKA   +KK+E++++EK+KK+++K+++++ 
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461

Length = 482

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKK---EKKKKKKKKKKKKKNN 63
           KA  KEK K EKK ++K+ + EK  K   E+K + + +K +K+  
Sbjct: 14 DKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELE 59

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 22   KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            K K +E KK  + AK + +    + +  ++K +  +KKK+
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374

Length = 2084

>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 12  FTEPTPLDWKKAKKKEKKK--------KEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
             E  PLD    + K+KK+         E +A+KK K KE+ KK+K K+ K  K  KK  
Sbjct: 217 IPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVV 276

RNases H are enzymes that specifically hydrolyse RNA when annealed to a complementary DNA and are present in all living organisms. In yeast RNase H2 is composed of a complex of three proteins (Rnh2Ap, Ydr279p and Ylr154p), this family represents the homologues of Ydr279p. It is not known whether non yeast proteins in this family fulfil the same function. Length = 287

>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 11/52 (21%)

Query: 25 KKEKKKKE-----------KKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNN 65
          ++E K KE           ++ ++KE K++  +     KKKKK+K KK  + 
Sbjct: 11 EEEVKLKERIWDELNKDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDE 62

This region covers both the Brf homology II and III regions. This region is involved in binding TATA binding protein. Length = 95

>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface glycoprotein C-terminal domain

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 17/53 (32%), Positives = 22/53 (41%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNN 73
           K K KE K K+  A   +    +   EK K KK KK  KK      N   ++
Sbjct: 25 GKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNTCKDS 77

The trypanosome parasite expresses these proteins to evade the immune response. Length = 98

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           KKA  + KKK   +AK    K   + K   +K    K  +K
Sbjct: 209 KKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEK 249

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKK--KEKKKKKKKKKKKKK 61
            KA  + KKK E +AKKK   + KKK   E K    K   + K
Sbjct: 193 AKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAK 235

Length = 387

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
           K+ KK E+K ++ +A+ ++K++E +K + K   K  KK  K  ++N +      N   N 
Sbjct: 102 KELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNF 161

Query: 81  NNN 83
              
Sbjct: 162 KEK 164

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 18/64 (28%), Positives = 24/64 (37%)

Query: 42  KEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLYKMAAPLV 101
           K K KK   KKKKKKKKKK  +             ++  ++    EE             
Sbjct: 11  KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDG 70

Query: 102 LVLT 105
           + LT
Sbjct: 71  MNLT 74

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 29  KKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNN 67
             + KK +KK++K EKK ++++ +K   KKK +      
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 10/49 (20%), Positives = 25/49 (51%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNN 69
           ++AK K + ++ ++  KK +   +K+K  ++++K K K  +        
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQ 152

Length = 213

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 13/47 (27%), Positives = 31/47 (65%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNN 67
           ++AKK+E   +++KA ++E+K + K   KK+K + +K + ++   ++
Sbjct: 117 QQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163

Length = 213

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 26 KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNN 74
          +E+ K    + KK+KK++K  + KKK +KKKKKKK+     +       
Sbjct: 44 EEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLG 92

Length = 413

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 18/41 (43%), Positives = 30/41 (73%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K+ +K++++ KE+K KKKEK KE+ K  K K++ K+K+  K
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPK 144

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 13  TEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
                 + +K + KE+KKK+K+  K+E K  K K+E K+K+  K+K+K+ 
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 22   KAKKKEKKKKEKKAKKKEKKKE--KKKKEKKKKKKKKKKKK 60
            +A K E +    +A+  E+K E  +KKKE+ KKK    KKK
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386

Length = 2084

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKK------KKKKKKNNNNNNNNNNNNNNNN 77
            KKE KK E+K ++ E + EKK++E +K K K      KK  KK ++N +      N   
Sbjct: 100 LKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKK 159

Query: 78  NNNNN 82
           N    
Sbjct: 160 NFKEK 164

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 11/38 (28%), Positives = 27/38 (71%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
           ++ K+++KK++ +    K   +E++K E+K++KK+ +K
Sbjct: 285 QEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 14/68 (20%), Positives = 36/68 (52%)

Query: 2   DSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
             S +            D + A+ +E K++EK+A   E K++K   EK+ ++ +++ +++
Sbjct: 39  SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEE 98

Query: 62  NNNNNNNN 69
           +  +++ N
Sbjct: 99  DEESSDEN 106

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 13/53 (24%), Positives = 34/53 (64%)

Query: 19 DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNN 71
          D ++ +++++++KE+K +K+EK+KE  K   +K++++K+ ++     N     
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLAR 65

This entry is characterized by proteins with alternating conserved and low-complexity regions. Bud13 together with Snu17p and a newly identified factor, Pml1p/Ylr016c, form a novel trimeric complex. called The RES complex, pre-mRNA retention and splicing complex. Subunits of this complex are not essential for viability of yeasts but they are required for efficient splicing in vitro and in vivo. Furthermore, inactivation of this complex causes pre-mRNA leakage from the nucleus. Bud13 contains a unique, phylogenetically conserved C-terminal region of unknown function. Length = 141

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 41.8 bits (99), Expect = 7e-04
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 25  KKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNN 66
             E+KK  KK +K EKK EK   E+ +K   KKK +      
Sbjct: 408 PAERKKLRKKQRKAEKKAEK---EEAEKAAAKKKAEAAAKKA 446

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 15/42 (35%), Positives = 31/42 (73%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           KK K+K K++ + +  K+E K+++  KEK+K+K+KK ++ ++
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 15/40 (37%), Positives = 30/40 (75%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
           K    KE++K++++ K+++KKK++K KE+ K +K K++ K
Sbjct: 99  KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 52 KKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNE 87
              ++    +NN ++N NNNNNNNN  N+NN NN 
Sbjct: 1  NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNN 36

Length = 522

>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 18/77 (23%)

Query: 26  KEKKKKEKKAKKK----EKKKEKKKKEKK------------KKKKK--KKKKKKNNNNNN 67
           +E+KKK +K KKK    +  K   KK  K              KKK   K+KKK      
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKK 258

Query: 68  NNNNNNNNNNNNNNNNN 84
            NN  N ++  +     
Sbjct: 259 RNNKKNYSDIKDKYAKE 275

This domain is found in Plasmodium Duffy binding proteins. Plasmodium vivax and Plasmodium knowlesi merozoites invade human erythrocytes that express Duffy blood group surface determinants. The Duffy receptor family is localised in micronemes, an organelle found in all organisms of the phylum Apicomplexa. Length = 276

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           KKA+ + KKK   +AKKK   + K    K   + K   +K 
Sbjct: 201 KKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKA 241

Length = 387

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 12/69 (17%), Positives = 33/69 (47%)

Query: 2   DSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            S +        E    D ++  + E+ K+E+K     + KE K   +K+ ++ +++ ++
Sbjct: 38  SSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEE 97

Query: 62  NNNNNNNNN 70
            +  +++ N
Sbjct: 98  EDEESSDEN 106

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 16/45 (35%), Positives = 35/45 (77%)

Query: 17 PLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
          P + ++ +K+EKK++E+K   KE++ ++++++++KKKK KK K+ 
Sbjct: 36 PDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80

Length = 529

>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 28/202 (13%), Positives = 66/202 (32%), Gaps = 8/202 (3%)

Query: 221 RRPNYRMYMRR---TFLLPYAIVTSLFFI--GQFGGMTTLQTYAVGIFESIHAPLDPYFA 275
           RR +   ++++     L+PY   + L+F+     GG++      + +   +     P   
Sbjct: 65  RRRSLFKFLKKRLLRLLIPYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGH 124

Query: 276 TLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVP 335
              L  A     LL  +L+    K    L+      A  +++++     L  G    ++ 
Sbjct: 125 LWFLP-ALFVFYLLLPLLLRLLRKLKKLLLL--LLLALLLLLSLLYILILLVGLPPTVLN 181

Query: 336 TVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT 395
            +  +L  FL    +      +  +     I    + A  +   +  F    +Y      
Sbjct: 182 LLIGLLPFFLLGALLARYRKRIRSKRLLLLIVILLALALLALILLLLFLFGLVYLAPELY 241

Query: 396 FHLWGTLYFYAAISVVGTLYMY 417
            +    L     + ++    + 
Sbjct: 242 GYFSLLLLLLGVLLLLLLALLL 263

This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long. Length = 326

>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal domain

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 13  TEPTPLDWKKAKKKEKKKKEKKAKKK-EKKKEKKKKEKKKKKKKKKKKKKN 62
               P   KKAK+K ++ K K  K++ EK+KEK+++  K   + +K++ + 
Sbjct: 58  ESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAEL 108

This domain is found in a number of different types of plant proteins including NAM-like proteins. Length = 147

>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 28 KKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNN--------- 78
          KKKK    +K+E+  EK+   K + + ++++K  N + + ++                  
Sbjct: 2  KKKKYAYLRKQEENAEKEINPKYRDRARERRKGINKDYDPSSLAAYRAVAPDAKSDIDAA 61

Query: 79 NNNNNNNNEEK 89
           N NN  +E K
Sbjct: 62 ENRNNTIDESK 72

This family contains sequences that are similar to the N-terminal region of Red protein. This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region, suggesting that these proteins are expressed in the nucleus. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated of that the protein self-aggregates extremely efficiently. Length = 238

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 2   DSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           D   K +      P   + +K KK E+ +  ++ KK+E+ + K + +K  KKK   KKK+
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 14/71 (19%), Positives = 30/71 (42%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
           ++  KK   +++   +  EK+ E KK +K+ K + K+KK+ +      +          N
Sbjct: 413 EEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVAN 472

Query: 81  NNNNNNEEKGT 91
                +E+   
Sbjct: 473 KLLKRSEKAQK 483

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 13/39 (33%), Positives = 27/39 (69%)

Query: 22 KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
          ++KK  K KK+ K++K EKK +++ + +K++  +K + K
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64

Rrp15p is required for the formation of 60S ribosomal subunits. Length = 132

>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755)

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 14/54 (25%), Positives = 32/54 (59%)

Query: 18  LDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNN 71
           L   + K+KE++K  +  KKK KK         KK   KK+++ ++++++++++
Sbjct: 61  LQQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSSSSSSSSSSS 114

This family is predominated by ORFs from Circoviridae. The function of this family remains to be determined. Length = 122

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 26  KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            E + K K   +K+  K  KK   K+ +KK+K+K+K
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEK 409

Length = 434

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 12/40 (30%), Positives = 27/40 (67%)

Query: 22  KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K KKK++K+  KK +   + + ++ KE+ +K+K+ +K ++
Sbjct: 79  KEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNRE 118

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 14  EPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           E   L  K+ KKK K+  +K+      ++E+ K+  +K+K+ +K ++K
Sbjct: 72  EKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREK 119

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 16 TPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNN 64
          TP+   +  + +KKKKE   + ++ KKE ++K+K K KKKK KKKK+ +
Sbjct: 50 TPIYDAEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKD 98

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 30 KKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNN 67
          KK+KK   +E +K KK+ E+K+K K KKKK K   + +
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKD 98

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 15/41 (36%), Positives = 35/41 (85%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           ++ +KKEKKKK    KKKE+++E++K++K+++K++++++ +
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463

Length = 482

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKK 54
          KK  K  +K ++K  K K K ++KK K+++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 10/54 (18%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 23  AKKKEKKKKEK-KAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNN 75
           A+K+ ++ K K +A++ E++ +K++   +K+K  ++++K               
Sbjct: 99  ARKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQ 152

Length = 213

>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 14/34 (41%), Positives = 26/34 (76%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKK 57
           + K++KKK  K KK+E+K+ K++ +++KKK K +
Sbjct: 97  RNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130

This bacterial family of proteins has no known function. However, the cis-regulatory yjdF motif, just upstream from the gene encoding the proteins for this family, is a small non-coding RNA, Rfam:RF01764. The yjdF motif is found in many Firmicutes, including Bacillus subtilis. In most cases, it resides in potential 5' UTRs of homologues of the yjdF gene whose function is unknown. However, in Streptococcus thermophilus, a yjdF RNA motif is associated with an operon whose protein products synthesise nicotinamide adenine dinucleotide (NAD+). Also, the S. thermophilus yjdF RNA lacks typical yjdF motif consensus features downstream of and including the P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the S. thermophilus RNAs might sense a distinct compound that structurally resembles the ligand bound by other yjdF RNAs. On the ohter hand, perhaps these RNAs have an alternative solution forming a similar binding site, as is observed with some SAM riboswitches. Length = 132

>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 33  KKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEEK 89
           K +KKK+    KKK  KK KKKKK+K++         +++  N  N+   +    + 
Sbjct: 49  KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKV 105

Length = 191

>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 22 KAKKKEKKKKEKKAKKKEKK---------KEKKKKEKKKKKKKKKKKKKNNNNNNNNNNN 72
          + K+K  KKK KK+KK              E ++ E K+  KKKKKKKK     N     
Sbjct: 16 QNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75

Query: 73 NNNNNNNNNNNNNNEEKGTFL 93
          +   +     ++   +  + +
Sbjct: 76 DLAYDLPVVWSSAAFQDNSHI 96

Length = 470

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 2   DSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
           D + K      ++      K AK+ + +  +++ K+KE+ KE+KKK+K+K K++ K +K
Sbjct: 74  DEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 22  KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNN 73
           + + K + KK  K K   KKKE  ++EK+++  ++  K K    + N     
Sbjct: 168 RVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREK 219

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K+A+++ K K   +AKKK  + +KK + + K K + K K K
Sbjct: 150 KQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAK 190

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 22  KAKKK---EKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
           +AKK+   E K K     KK+  + KKK E + K K + K K
Sbjct: 147 EAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKK---EKKKKEKKKKKKKKKKKKK 61
            +AK K + + EKKAK++ KK+   E K K   + KKK  + KK
Sbjct: 130 AEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKK 173

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 23  AKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            + K K+  E KAK  E + EKK KE+ KK+ +++ K K
Sbjct: 122 EEAKAKQAAEAKAKA-EAEAEKKAKEEAKKQAEEEAKAK 159

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 29 KKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
          KK+++  K + K+ +K+  +K  +KKK+K   K
Sbjct: 4  KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFK 36

This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Length = 71

>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 25 KKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
          KK K+ ++ +AK+ +K+  KK   KKK+K   K+ +K
Sbjct: 4  KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEK 40

This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Length = 71

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 41.3 bits (98), Expect = 0.001
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 20  WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
            +K +       +  A KK   K  +K +++    +K  K 
Sbjct: 818 PEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858

Length = 859

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 41.3 bits (98), Expect = 0.001
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            +K +   +  AK    KK   K  +K K++    +K 
Sbjct: 818 PEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKD 855

Length = 859

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 0.001
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 21   KKAKKKEKKKKEKKAKKKEKKKE---KKKKEKKKKKKKKKKKKK 61
            KKA++ +KK    K K +E KK     K + +    + +  ++K
Sbjct: 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 0.001
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 21   KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK---KKK 61
            KKA++ +K  +  KA+ +    E +  E+K +  +KKK   KKK
Sbjct: 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379

Length = 2084

>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 3/25 (12%), Positives = 22/25 (88%)

Query: 62 NNNNNNNNNNNNNNNNNNNNNNNNN 86
          +++ +N++++++N++N  +++++++
Sbjct: 27 SSSGSNSSSSSSNSSNGGSSSSSSS 51

This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggest that this family may be functionally analogous to pfam03958. Length = 95

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 14  EPTPL-DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNN 72
           EP P+ +  K       K E K K K K K K  K+ +++ K++ K  +    +   N  
Sbjct: 77  EPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTA 136

Query: 73  NNNNNNNNNNNNNN 86
                ++      +
Sbjct: 137 PARPTSSTATAAAS 150

Length = 246

>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 12/65 (18%), Positives = 34/65 (52%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNN 83
           ++ E  + E++  + E+++E+ +++    K  +KK   +  N+  ++N  N  + N   N
Sbjct: 63  EEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNLISKNYKKN 122

Query: 84  NNNEE 88
             +++
Sbjct: 123 EKSKK 127

This family consists of several Plasmodium falciparum SPAM (secreted polymorphic antigen associated with merozoites) proteins. Variation among SPAM alleles is the result of deletions and amino acid substitutions in non-repetitive sequences within and flanking the alanine heptad-repeat domain. Heptad repeats in which the a and d position contain hydrophobic residues generate amphipathic alpha-helices which give rise to helical bundles or coiled-coil structures in proteins. SPAM is an example of a P. falciparum antigen in which a repetitive sequence has features characteristic of a well-defined structural element. Length = 164

>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 51 KKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEE 88
              ++     NN ++N NNNNNNNN  N+NN NNN  
Sbjct: 1  NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGN 38

Length = 522

>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNN 79
          KK K   K+ K     KK+ ++E   + +++K+KKK K  K+ + +N  N  +      
Sbjct: 1  KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQA 59

Length = 177

>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface glycoprotein C-terminal domain

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 19 DWKKAKKKEK-KKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
           W K +   K K KE KAKK      +    +   +K K KK K +
Sbjct: 17 KWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKD 62

The trypanosome parasite expresses these proteins to evade the immune response. Length = 98

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 17 PLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
           L  K  K   KKKK+KK KK + K+E   ++++++K   +   K  
Sbjct: 9  KLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEG 55

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 13/44 (29%), Positives = 33/44 (75%), Gaps = 3/44 (6%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKK---EKKKKKKKKKKKKK 61
            + +++E+ +++K+ KKKE+++ K  K   E+++K ++K++KK+
Sbjct: 276 AEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQ 319

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 10/54 (18%), Positives = 29/54 (53%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNN 74
           K   ++  + +E K ++KE    + K++K   +K+ ++ ++ N   +  +++ N
Sbjct: 53  KSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDEN 106

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 16/44 (36%), Positives = 32/44 (72%)

Query: 19 DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
          + ++ K+++K+++EK   K+E+  E+++KE+KKKK KK K+   
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82

Length = 529

>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal domain

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 14/44 (31%), Positives = 29/44 (65%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNN 64
           +K  K++ ++ + KAKK+E +KEK+K+E+  K   + +K++   
Sbjct: 65  RKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAEL 108

This domain is found in a number of different types of plant proteins including NAM-like proteins. Length = 147

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 21   KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
            ++ K K K K  K  K K KKKEKKKK+    K KK     N+   +++     ++  +N
Sbjct: 1156 QRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDN 1215

Query: 81   NNNNNNE 87
              +N++ 
Sbjct: 1216 KKSNSSG 1222

Length = 1388

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 20   WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNN 78
             ++ +  ++++ + K K K  K  K K +KK+KKKKK    K+   +   N+   +++ 
Sbjct: 1147 VEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDE 1205

Length = 1388

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 11/54 (20%), Positives = 26/54 (48%)

Query: 35  AKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEE 88
             K +++   K + K ++++ ++K ++NN  + N   +  +N        N EE
Sbjct: 585 ETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREE 638

Length = 1068

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           ++    E K + K+ KK+E  K K +KEK K + KK K  K
Sbjct: 110 EQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207)

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 11/43 (25%), Positives = 32/43 (74%)

Query: 19  DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           +W  AK+ +++KK +K  ++++K+E++K+ ++ + +++  K+K
Sbjct: 91  NWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEK 133

This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 49/283 (17%), Positives = 94/283 (33%), Gaps = 49/283 (17%)

Query: 105 TYVAEITQPHLRGMLS----ATASMTTIFGTVSQLFLGSF--LHWRSAAILNLLFPILAL 158
            YV E    HLR   S    +  ++  +        +       WR+   +++L  I AL
Sbjct: 123 AYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182

Query: 159 CALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKD 218
                IPE+  W             +  L G     ++   +  +  A+ +S        
Sbjct: 183 WLRKNIPEAEDWKEKHAGKALVRTMVDILYG--GEHRIANIVMTLAAAMVQSA------- 233

Query: 219 GQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLL 278
           G+R P +   +         ++     +        L TY           L P+    +
Sbjct: 234 GKRWPTFVYLV---------VLVLFANLYSHPIQDLLPTYL-----KADLGLSPHTVANI 279

Query: 279 LGVAELGGALLCVV---LIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVP 335
           +  + +G  +   V   L  + G+R  A + +  +    I+         + G +  +  
Sbjct: 280 VVFSNIGAIVGGCVFGFLGDWLGRR-KAYVCSLLAGQLLIIPV------FAIGANVAV-- 330

Query: 336 TVFLVLAAFLTHICIR----LLPWMLIGEVFPNNIRATASGAS 374
              L L  F   + ++    +LP   +GE FP + RA   G +
Sbjct: 331 ---LGLGLFFQQMLVQGIWGILP-KHLGEYFPTDQRAAGLGFT 369

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947)

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 24  KKKEKKKKEKKAKKKE---KKKEKKKKEKKKKKKKKKKKK 60
           KK E KK   K K  E    K+  K  EKK+KK   K+KK
Sbjct: 129 KKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEKK 168

Family of eukaryotic proteins with unknown function. Length = 168

>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 19/60 (31%), Positives = 26/60 (43%)

Query: 19  DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNN 78
           +  +A K   K K KK K  E+++EKK K      K+KK  KK   +N        N   
Sbjct: 517 ETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKK 576

Length = 591

>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKK 56
          + + K +K+     ++ +KE KK    K KKKK
Sbjct: 1  RLRYKIEKKVAEHHRKLRKEAKKNPTWKSKKKK 33

Grn1 (yeast) and GNL3L (human) are putative GTPases which are required for growth and play a role in processing of nucleolar pre-rRNA. This family contains a potential nuclear localisation signal. Length = 80

>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 20 WKKAKKK-----EKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
          +KKA         +KKKEKK  K E K+   KK   +++K +  +K
Sbjct: 48 YKKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93

This domain is the C-terminal end of ribosomal L18/L5 proteins. Length = 93

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 13  TEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
           T  TP      +KK K KK+  + K +  K  KKK K K KK  KK+ 
Sbjct: 742 TPKTPY-----EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784

Length = 860

>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 13/35 (37%), Positives = 25/35 (71%)

Query: 26 KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
          KE+K++EK  +++E K+ K  K ++ ++K +K KK
Sbjct: 1  KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35

The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus. Length = 99

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 12/69 (17%), Positives = 29/69 (42%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
             A+     ++ K  + K K++ KK  E  + K+K + +++N    +    N    +   
Sbjct: 185 NLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQ 244

Query: 81  NNNNNNEEK 89
               + +E+
Sbjct: 245 ELLRDEQEE 253

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNN 66
          +KA+KK+K+K+ KK +  +K + ++ K ++ K KKK    +N   N
Sbjct: 18 RKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 14/55 (25%), Positives = 31/55 (56%)

Query: 28 KKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNN 82
          ++++ K+ ++K +KK+K+K+ KKK+  +K + ++  N  N +        N   N
Sbjct: 9  EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNN 69
          ++ +K  KK+K K+AKKKE  ++ + +E K ++ K KKK     N   N
Sbjct: 15 REQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 15  PTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEK 49
           P P   K+ +KK +K+K+KK +KK+ KK KKK  K
Sbjct: 380 PKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 15/42 (35%), Positives = 34/42 (80%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           KK KKK+    +KK +++E++KEKK++EK++++++ +++K+ 
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468

Length = 482

>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992)

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 17/35 (48%), Positives = 27/35 (77%), Gaps = 3/35 (8%)

Query: 30  KKEKKAKKKEKKK---EKKKKEKKKKKKKKKKKKK 61
           K E +  K+EKKK   EKK++EK++K++ K++KKK
Sbjct: 92  KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKK 126

This bacterial family of proteins has no known function. However, the cis-regulatory yjdF motif, just upstream from the gene encoding the proteins for this family, is a small non-coding RNA, Rfam:RF01764. The yjdF motif is found in many Firmicutes, including Bacillus subtilis. In most cases, it resides in potential 5' UTRs of homologues of the yjdF gene whose function is unknown. However, in Streptococcus thermophilus, a yjdF RNA motif is associated with an operon whose protein products synthesise nicotinamide adenine dinucleotide (NAD+). Also, the S. thermophilus yjdF RNA lacks typical yjdF motif consensus features downstream of and including the P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the S. thermophilus RNAs might sense a distinct compound that structurally resembles the ligand bound by other yjdF RNAs. On the ohter hand, perhaps these RNAs have an alternative solution forming a similar binding site, as is observed with some SAM riboswitches. Length = 132

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 13  TEPTPLDWKKAKK--KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNN 70
            +P        +    + K+K K  KK +K K K K + K K K K + K     +    
Sbjct: 67  PKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAA 126

Query: 71  NNNNNNN 77
                 N
Sbjct: 127 KAPAAPN 133

Length = 244

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           +K   K KK+K++K +KK  +K  KKK  K  K   KK  K
Sbjct: 108 EKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATK 148

Length = 158

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 15/76 (19%), Positives = 35/76 (46%)

Query: 13  TEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNN 72
            E    +  +AK + KK  +KK   K+K+  +++K+++  ++  K K +  + N      
Sbjct: 161 EEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKE 220

Query: 73  NNNNNNNNNNNNNNEE 88
            ++  +     +  EE
Sbjct: 221 EDDGKDRETTTSPMEE 236

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
           KK   + KKK E +AK K + K K K E+ K K +  K K
Sbjct: 165 KKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 18/69 (26%), Positives = 27/69 (39%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
              KK+  +   K  K+K+ ++ KK+     KKK  K      N   NN NN  N     
Sbjct: 86  NYQKKECYEIINKYFKEKKIERFKKRVNAYFKKKSNKNGSVEKNECINNKNNVINKKIKE 145

Query: 81  NNNNNNEEK 89
            +   N + 
Sbjct: 146 ESKKKNSKN 154

This protein is encoded by an open reading frame in plasmid borne DNA repeats of Borrelia species. This protein is known as ORF-A. The function of this putative protein is unknown. Length = 285

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 18/44 (40%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 20  WKKAKKKEKKKK--EKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           WK   K+E +++  EK+A K++K+  K KK+++KKKK+ +K +K
Sbjct: 545 WKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588

Length = 651

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 40.9 bits (97), Expect = 0.002
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 18  LDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           L  K  K +       K    +K   K  ++ K++    +K  K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857

Length = 859

>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 62 NNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLYK 95
          +N NNNNNNNN  N+NN NNN NN   K     K
Sbjct: 16 DNYNNNNNNNNQINSNNPNNNGNNQASKLPRGKK 49

Length = 522

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN-NNNNNNNNNNNNNNNNN 79
            + ++ +K+ K+ + K ++ + E +KKE++ +K K K   K         ++N +     
Sbjct: 95  AQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKG 154

Query: 80  NNNNNNNEEK 89
            N   N +EK
Sbjct: 155 LNYKKNFKEK 164

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 26 KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNN 70
          K K KK    KKK+KKK+K K +++   +K++++K +  ++    
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEG 55

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 5/49 (10%)

Query: 18  LDW--KKAKKKEKKK---KEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           L W  KK ++ +KK+   KE +A + +KK    ++EKKKKKKK  KKKK
Sbjct: 146 LAWLLKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKK 194

Ribonuclease H2B is one of the three proteins of eukaryotic RNase H2 complex that is required for nucleic acid binding and hydrolysis. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. Eukaryotic RNase HII is active during replication and is believed to play a role in removal of Okazaki fragment primers and single ribonucleotides in DNA-DNA duplexes. Eukaryotic RNase HII is functional when it forms a complex with RNase H2B and RNase H2C proteins. It is speculated that the two accessory subunits are required for correct folding of the catalytic subunit of RNase HII. Mutations in the three subunits of human RNase HII cause neurological disorder. Length = 211

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 13/40 (32%), Positives = 30/40 (75%)

Query: 22  KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            +++ E K KE+K K++E +K++K++  + K+K++K ++K
Sbjct: 394 ASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433

Length = 434

>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 30 KKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
          K E    KK+KKK+KKK E      K KK    +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAED 50

This is a region found N terminal to the catalytic domain of glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function. Length = 83

>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 36 KKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEEK 89
           K +   E   K+ K+KK+  ++K+   N   N N N  N     ++    EE+
Sbjct: 3  TKVDAAAELSAKDLKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEE 56

Prothymosin alpha and parathymosin are two ubiquitous small acidic nuclear proteins that are thought to be involved in cell cycle progression, proliferation, and cell differentiation. Length = 106

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 42  KEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNE-----EKGT 91
           +E+          +   K    NNN NN ++NNNNNNNNNN  NN      E+GT
Sbjct: 655 RERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGT 709

Length = 1466

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 11/42 (26%), Positives = 29/42 (69%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           KK K++E++++ +  +  E+++  +  EK+  K K++K+++N
Sbjct: 98  KKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRREN 139

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           KK + K K  KE   KKK+K     K  K    + KKK ++
Sbjct: 86  KKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSER 126

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 4   STKHQIGTFTEPTPLD--WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKK 55
           STK  I     P   D  +K+ KKK+KKKKE +  +++KKK    +E+K+ +K 
Sbjct: 63  STKVDISGVKVPKLNDAYFKRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116

RPL6 contains KOW motif that has an extra ribosomal role as an oncogenic. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. . Length = 152

>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and modification]

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 11/58 (18%), Positives = 21/58 (36%)

Query: 22 KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNN 79
          K++K+    + K A     K E       ++ ++KKK    N+    N   +      
Sbjct: 5  KSRKRSGNNQNKNASVVNNKAEIAAMIDARRLEQKKKGGVTNSKGKTNKVVDAKLEKE 62

Length = 429

>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase; Provisional

 Score = 40.2 bits (93), Expect = 0.002
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 14  EPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNN---- 69
           E T  +    +KKE   +++ A K   +  K            K     N N NN     
Sbjct: 273 ENTNTNTATTEKKETTTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTST 332

Query: 70  ---NNNNNNNNNNNNNNNNNEEKGT 91
              N N N N+N N N+N N  +G+
Sbjct: 333 PSKNTNTNTNSNTNTNSNTNANQGS 357

Length = 481

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 7/51 (13%)

Query: 18  LDWKKAKKKEKKKKEKKAKKK-EKKKEK------KKKEKKKKKKKKKKKKK 61
           LD  KA + E+K+K  KA  K E  K K      KK  K+K+K+KKK KK+
Sbjct: 111 LDEDKAAEIEEKEKWTKALAKAEGVKVKDDEKLLKKALKRKEKQKKKSKKE 161

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 18/37 (48%), Positives = 28/37 (75%)

Query: 25  KKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K+E  K+ ++ K+K  K  KKK+E+KK +K+KKKKK+
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKR 401

Length = 414

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 14/41 (34%), Positives = 36/41 (87%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K+ ++K++KKK+  A KK++++E+++KEKK+++K++++++ 
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 13/42 (30%), Positives = 34/42 (80%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           KK K    KKKE++ +++++KKE++K+E++++ +++K++++ 
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471

Length = 482

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 18 LDWKKAKKKEKK-KKEKKAKKKEKKKEKKKKEKKKK 52
          LD K+ K  EK  KK +KAK K +KK+ KK+E K +
Sbjct: 63 LDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 14/76 (18%), Positives = 40/76 (52%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
          +K   + +++++K  K +   +E ++  +++ + + ++++   +   ++ +N +NN N N
Sbjct: 3  RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHKIISSLSNLSNNYNYN 62

Query: 81 NNNNNNEEKGTFLYKM 96
          NN NN        Y +
Sbjct: 63 NNYNNYNNYNKHYYNI 78

This family of proteins represents the complementary sex determiner in the honeybee. In the honeybee, the mechanism of sex determination depends on the csd gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development. Length = 146

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 13  TEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            E   +  +  +K+  K K++K +KKEKK  +K  +KK  K  K   KK
Sbjct: 97  KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKK 145

Length = 158

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 5/46 (10%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKK-----KEKKKKKKKKKKKKK 61
           +K K+KEKK +E + +++EKK+E+ +     K+  KKK   KKK+ 
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEP 190

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 15/41 (36%), Positives = 30/41 (73%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            K +  ++++KEK+  K+EKKK+K+K +++ K +K K++ K
Sbjct: 98  PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.003
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 22   KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            K K +E KKK   AKKK ++ +K  +  K + +    + +
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360

Length = 2084

>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 3/25 (12%), Positives = 21/25 (84%)

Query: 62 NNNNNNNNNNNNNNNNNNNNNNNNN 86
           +++ +N++++++N++N  ++++++
Sbjct: 26 VSSSGSNSSSSSSNSSNGGSSSSSS 50

This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggest that this family may be functionally analogous to pfam03958. Length = 95

>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 26 KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
          +E+++KE K K  E     KKK+K+K KKK+ +  
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64

This region covers both the Brf homology II and III regions. This region is involved in binding TATA binding protein. Length = 95

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 22 KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNN 66
          K K K+   K+KK KKK+K K K++   +K++++K   + +    
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEG 55

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 2   DSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKK-----KKKKK 56
           D   + Q     E   + + +  + +K   + K KK++  +E+++K+ K      K+KK 
Sbjct: 497 DEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKL 556

Query: 57  KKKKKNNNNNNNNNNNNNNN 76
            KK K +N        N   
Sbjct: 557 YKKMKYSNAKKEEQAENLKK 576

Length = 591

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 61  KNNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFL 93
           K+N  NNN NN ++NNNNNNNNNN     G+++
Sbjct: 672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYI 704

Length = 1466

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 10/39 (25%), Positives = 27/39 (69%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKK 59
           ++ + +E  ++E+  +  EK+  K K+EK+++ ++K+K+
Sbjct: 107 EEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKE 145

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 23  AKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNN 82
            + K+ ++   KA KK ++K +++ + + + +K++KK+K   + + ++  N N+ N   N
Sbjct: 2   KRSKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRKGLASGSRHSGGNENSGNKQQN 61

Query: 83  NNNNEEKGTFLYKMAAPLVLVLTYVAE-ITQPH 114
              +   G+   K   PL      V E +T+ H
Sbjct: 62  QKKDPRIGS---KKPIPLG-----VTEKVTKQH 86

Length = 169

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 21/43 (48%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 21  KKAKKKEKK--KKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           KKAKK  KK  KK  KA KK  KK  K   K  K   K  K K
Sbjct: 250 KKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGK 292

Length = 333

>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
           K  K   K K E+  K++  +  +KKKEKK K +++  + 
Sbjct: 356 KPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395

Length = 395

>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7)

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
          W    +  +K+K   ++ K  ++ +K KEKKKKKKK+ +
Sbjct: 52 WTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELE 90

RRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle. Length = 131

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 13/55 (23%), Positives = 32/55 (58%)

Query: 23 AKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNN 77
           +++ K+++ K  KK+++K+ KKK++ +K + ++ K ++N +        N   N
Sbjct: 9  EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72 family

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 17/69 (24%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
          +  KK E K  E   K  +K   K+                  + NNNN +NN N +  N
Sbjct: 33 QPEKKPEIKPNENTPKIPKKPDNKEP-----------------SENNNNKSNNENKDEEN 75

Query: 81 NNNNNNEEK 89
           ++ N E+K
Sbjct: 76 PSSTNPEKK 84

Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa. Length = 541

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 13  TEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            +P P    +   +    K K+  K EKK +K K + K K K K K K 
Sbjct: 65  EQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKP 113

Length = 244

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNN 75
             E++ K      K+ KKE K  E KKK +KKKKKKK      +       
Sbjct: 41 TFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLG 92

Length = 413

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K+ +K   K    K K  ++ K +  KE++K+K++ K++KK
Sbjct: 78  KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKK 118

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKK 59
            K++K+ EK   K+ KK+  KK  +KKK+K   K+
Sbjct: 2  LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKR 37

This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Length = 71

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 14/41 (34%), Positives = 29/41 (70%)

Query: 17  PLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKK 57
             + ++ K++++  KE+K  +K KK+E+KKK++ +K +K K
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590

Length = 651

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 39.8 bits (94), Expect = 0.004
 Identities = 8/45 (17%), Positives = 18/45 (40%)

Query: 18  LDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
           L+    K ++ +       K    K+   K  +K K++    +K+
Sbjct: 811 LELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKD 855

Length = 859

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 19   DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
            + KK     KKK E+  K  E  K + +    + +  ++K +
Sbjct: 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 22   KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            K K    KKK ++AKK  +  + + +    + +  ++K +
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 22   KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
            +AKKK ++ K+K    K+K +E KK  +  K + +    +
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358

Length = 2084

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
          K+ K++ K     K + K   K +KKKEK++ K  K K K 
Sbjct: 50 KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKP 90

Length = 330

>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 24  KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKK 59
           + ++K+K +++ KKK+ K+ K  K  KK   K  KK
Sbjct: 247 RAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282

RNases H are enzymes that specifically hydrolyse RNA when annealed to a complementary DNA and are present in all living organisms. In yeast RNase H2 is composed of a complex of three proteins (Rnh2Ap, Ydr279p and Ylr154p), this family represents the homologues of Ydr279p. It is not known whether non yeast proteins in this family fulfil the same function. Length = 287

>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 16  TPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           T  D + A+ + +KK++ K + K+KK ++ K  K  KK   K  KK
Sbjct: 237 TEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282

RNases H are enzymes that specifically hydrolyse RNA when annealed to a complementary DNA and are present in all living organisms. In yeast RNase H2 is composed of a complex of three proteins (Rnh2Ap, Ydr279p and Ylr154p), this family represents the homologues of Ydr279p. It is not known whether non yeast proteins in this family fulfil the same function. Length = 287

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 23  AKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           AKKK + + +KKA  + KKK   + +    K   + K  
Sbjct: 199 AKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237

Length = 387

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 31 KEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEEKG 90
          K K  K   KKK+KKKK+K K K++   +K+    ++  ++      + +N     EE G
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDG 70

Query: 91 T 91
           
Sbjct: 71 M 71

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 9   IGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNN 68
             +         ++  KK     ++ A+ +E K+E+K+    + K+ K   +K +  +  
Sbjct: 36  FPSSPSDQAAADEQEAKK--SDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEE 93

Query: 69  NNNNNNNNNNNNNNNNNNEEKG 90
            N   +  +++ N     E+  
Sbjct: 94  ENEEEDEESSDENEKETEEKTE 115

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 27/108 (25%)

Query: 9   IGTFTEP-TPLDWKKAKKKEKKKKEKKAKKK------------------------EKKKE 43
           + TF  P  P     A+                                      E+ K 
Sbjct: 529 LATFAMPDVPPAPTPAEPAAPVVAAAPKAAAATPPAQPGLLSRFFGALKALFSGGEETKP 588

Query: 44  KKKKEKKKKKKKKKKKKKNNNNNNNN--NNNNNNNNNNNNNNNNNEEK 89
           +++   K + K ++++ +     NN    N   +  +N       E +
Sbjct: 589 QEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENR 636

Length = 1068

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 26  KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
            ++ ++E   + K + KEKKK+E  K K +K+K K
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPK 140

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 15/37 (40%), Positives = 16/37 (43%)

Query: 29  KKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNN 65
           +KK K  KK    K K  K  KKK K K KK      
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784

Length = 860

>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 28 KKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNE 87
             K   A +   K  K+KKE  ++K+  K     N   N N N  N     ++     E
Sbjct: 1  SDTKVDAAAELSAKDLKEKKEVVEEKENGK-----NAPANGNENEENGAQEGDDEMEEEE 55

Query: 88 EK 89
          E 
Sbjct: 56 EV 57

Prothymosin alpha and parathymosin are two ubiquitous small acidic nuclear proteins that are thought to be involved in cell cycle progression, proliferation, and cell differentiation. Length = 106

>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7)

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 13/53 (24%)

Query: 22  KAKKKEKKKKEKKAKK-------KEKKKE------KKKKEKKKKKKKKKKKKK 61
           + K KEKKKK+KK  +       +EKKKE      KK +E KK+ ++ K  +K
Sbjct: 75  RRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRIEQLKAARK 127

RRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle. Length = 131

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 15/85 (17%)

Query: 21  KKAKKKEKKKKEKKAKK---------------KEKKKEKKKKEKKKKKKKKKKKKKNNNN 65
            + K++E KKK K                      +  K KK KKKKKKKKK++K  + +
Sbjct: 236 AEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDED 295

Query: 66  NNNNNNNNNNNNNNNNNNNNNEEKG 90
                     ++++ +  +  EE  
Sbjct: 296 ELEPEAEGLGSSDSGSRKDVEEENA 320

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 12/38 (31%), Positives = 24/38 (63%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
            +  ++EK +  K+A K  +++E +K +K+ KK KK +
Sbjct: 88  VELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125

The PcfK-like protein family includes the Enterococcus faecalis PcfK protein, which is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 137 and 257 amino acids in length. There are two completely conserved residues (D and L) that may be functionally important. Length = 136

>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 19  DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNN 71
             K A + ++K KEK    KE K E    E + ++   K++++   +     N
Sbjct: 790 TIKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILN 842

Length = 926

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           K  +K +    EKK+KK  KKKEKK+KEK++ K KKK+ + 
Sbjct: 185 KSPEKGDVPAVEKKSKKP-KKKEKKEKEKERDKDKKKEVEG 224

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 48/159 (30%)

Query: 286 GALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFL 345
             L  V+   Y        +ST G  A +    V AQF  ++G ++    T F+V     
Sbjct: 376 TVLFFVLGFAYNH------LSTHGFLAIY----VLAQFFANFGPNA----TTFIV----- 416

Query: 346 THICIRLLPWMLIGEVFPNNIRATASGASGSSSYI------FAF-------AVNKLYYPM 392
                   P    GEVFP   R+TA G S +S         F F          K Y   
Sbjct: 417 --------P----GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTG 464

Query: 393 LDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDI 431
           +   H+   L  +A    +G L+   ++PET+G++L ++
Sbjct: 465 IWMGHV---LEIFALFMFLGILFT-LLIPETKGKSLEEL 499

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 2   DSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
           DSS         E        AK + ++ ++ +  ++EK +E+    KK KK KK K KK
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKK 348

Query: 62  NNN 64
           N  
Sbjct: 349 NGL 351

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058)

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 17/59 (28%)

Query: 19 DWKKAKK--KEKKKKEKKAKK-------------KEKKKEKKKKEKK--KKKKKKKKKK 60
          D KKAKK  KEK+K+ K+A+K             +E K EK +++++  ++++ + ++K
Sbjct: 13 DKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71

This domain, found in various prokaryotic proteins, has no known function. Length = 177

>gnl|CDD|218858 pfam06024, DUF912, Nucleopolyhedrovirus protein of unknown function (DUF912)

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 62  NNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLYKMAAPLVLVLTYVAEIT 111
           N++N++NN   N NN  +    N+   + +   K  A  ++++  +A   
Sbjct: 24  NDDNDDNNAPINANNTQSVYPKNDITNEDSNASKANAGNIILIGLLAFFC 73

This family consists of several Nucleopolyhedrovirus proteins of unknown function. Length = 101

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 21  KKAKKKEKKKKEKKAKKKEKKK----EKKKKEKKKKKKKKKKK 59
           K+ K   KK K  KAKK  KK     EKK  E + +   +KK 
Sbjct: 110 KEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152

Length = 186

>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 18/65 (27%), Positives = 27/65 (41%)

Query: 7  HQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNN 66
            +           +K K+K  K K+    ++   KE K + KKKKK KK  K+K     
Sbjct: 17 EFLEEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLK 76

Query: 67 NNNNN 71
            +N 
Sbjct: 77 KESNE 81

This is a novel repeat in Pneumocystis carinii Major surface glycoprotein (MSG) some members of the alignment have up to nine repeats of this family, the repeats containing several conserved cysteines. The MSG of P. carinii is an important protein in host-pathogen interactions. Surface glycoprotein A from Pneumocystis carinii is a main target for the host immune system, this protein is implicated in the attachment of Pneumocystis carinii to the host alveolar epithelial cells, alveolar macrophages, host surfactant and possibly accounts in part for the hypoxia seen in Pneumocystis carinii pneumonia (PCP). Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	553
KOG0569|consensus	485		100.0
KOG0254|consensus	513		99.97
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.95
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.95
KOG0253|consensus	528		99.95
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.93
TIGR00898	505	2A0119 cation transport protein.	99.93
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.88
KOG0252|consensus	538		99.88
PRK09952	438	shikimate transporter; Provisional	99.87
KOG0255|consensus	521		99.86
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.86
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.86
PRK15075	434	citrate-proton symporter; Provisional	99.83
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.83
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.83
PRK10489	417	enterobactin exporter EntS; Provisional	99.82
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.82
PRK12307	426	putative sialic acid transporter; Provisional	99.82
PRK11663	434	regulatory protein UhpC; Provisional	99.82
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.8
KOG0569|consensus	485		99.8
TIGR00891	405	2A0112 putative sialic acid transporter.	99.8
PRK03545	390	putative arabinose transporter; Provisional	99.79
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.78
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.78
PRK05122	399	major facilitator superfamily transporter; Provisi	99.78
PRK12382	392	putative transporter; Provisional	99.78
TIGR00893	399	2A0114 d-galactonate transporter.	99.78
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.77
PRK03893	496	putative sialic acid transporter; Provisional	99.77
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.77
PRK09705	393	cynX putative cyanate transporter; Provisional	99.76
TIGR00895	398	2A0115 benzoate transport.	99.75
PRK09874	408	drug efflux system protein MdtG; Provisional	99.75
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.75
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.74
PRK11010	491	ampG muropeptide transporter; Validated	99.73
TIGR00900	365	2A0121 H+ Antiporter protein.	99.72
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.72
PRK15011	393	sugar efflux transporter B; Provisional	99.72
PRK03699	394	putative transporter; Provisional	99.72
PRK10091	382	MFS transport protein AraJ; Provisional	99.71
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.71
KOG2532|consensus	466		99.71
PLN00028	476	nitrate transmembrane transporter; Provisional	99.71
KOG2533|consensus	495		99.7
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.7
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.69
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.69
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.69
PRK10504	471	putative transporter; Provisional	99.69
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.68
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.68
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.68
KOG0254|consensus	513		99.68
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.68
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.68
PRK09528	420	lacY galactoside permease; Reviewed	99.68
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.67
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.67
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.67
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.66
PRK11902	402	ampG muropeptide transporter; Reviewed	99.66
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.64
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.64
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.63
TIGR00901	356	2A0125 AmpG-related permease.	99.62
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.61
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.61
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.61
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.6
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.6
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.6
KOG1330|consensus	493		99.59
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.59
PRK11043	401	putative transporter; Provisional	99.59
PRK03633	381	putative MFS family transporter protein; Provision	99.58
PRK10054	395	putative transporter; Provisional	99.58
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.57
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.57
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.56
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.56
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.53
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.53
PRK10133	438	L-fucose transporter; Provisional	99.53
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.52
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.52
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.51
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.49
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.49
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.47
PRK11663	434	regulatory protein UhpC; Provisional	99.45
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.45
KOG2504|consensus	509		99.44
PF13347	428	MFS_2: MFS/sugar transport protein	99.43
PRK03545	390	putative arabinose transporter; Provisional	99.42
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.42
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.41
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.41
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.4
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.4
TIGR00895	398	2A0115 benzoate transport.	99.4
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.39
TIGR00891	405	2A0112 putative sialic acid transporter.	99.39
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.39
TIGR00893	399	2A0114 d-galactonate transporter.	99.39
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.39
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.39
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.39
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.38
PRK09669	444	putative symporter YagG; Provisional	99.38
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.37
PRK10091	382	MFS transport protein AraJ; Provisional	99.37
COG2211	467	MelB Na+/melibiose symporter and related transport	99.36
TIGR00805	633	oat sodium-independent organic anion transporter.	99.35
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.35
PRK11462	460	putative transporter; Provisional	99.34
PRK10504	471	putative transporter; Provisional	99.34
PRK12307	426	putative sialic acid transporter; Provisional	99.34
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.33
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.33
KOG3764|consensus	464		99.33
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.33
PRK10429	473	melibiose:sodium symporter; Provisional	99.33
PLN00028	476	nitrate transmembrane transporter; Provisional	99.32
KOG0252|consensus	538		99.32
KOG4686|consensus	459		99.32
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.32
PRK03699	394	putative transporter; Provisional	99.3
KOG2615|consensus	451		99.3
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.3
PRK10642	490	proline/glycine betaine transporter; Provisional	99.3
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.3
PTZ00207	591	hypothetical protein; Provisional	99.3
PRK10054	395	putative transporter; Provisional	99.3
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.28
TIGR00900	365	2A0121 H+ Antiporter protein.	99.28
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.28
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.28
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.28
PRK03893	496	putative sialic acid transporter; Provisional	99.27
PRK09874	408	drug efflux system protein MdtG; Provisional	99.27
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.27
KOG1330|consensus	493		99.26
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.25
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.25
PRK11043	401	putative transporter; Provisional	99.24
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.24
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.24
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.23
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.23
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.22
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.22
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.22
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.21
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.21
PRK09848	448	glucuronide transporter; Provisional	99.21
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.2
KOG2563|consensus	480		99.2
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.2
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.19
KOG0255|consensus	521		99.19
PTZ00207	591	hypothetical protein; Provisional	99.19
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.18
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.18
PRK09705	393	cynX putative cyanate transporter; Provisional	99.18
PRK15075	434	citrate-proton symporter; Provisional	99.17
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.17
PRK10489	417	enterobactin exporter EntS; Provisional	99.17
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.17
PRK05122	399	major facilitator superfamily transporter; Provisi	99.16
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.15
PRK09952	438	shikimate transporter; Provisional	99.15
TIGR00898	505	2A0119 cation transport protein.	99.14
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.14
TIGR00805	633	oat sodium-independent organic anion transporter.	99.13
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.13
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.12
KOG2615|consensus	451		99.12
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.1
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.1
PRK12382	392	putative transporter; Provisional	99.09
PRK03633	381	putative MFS family transporter protein; Provision	99.09
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.09
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.08
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.07
PRK10133	438	L-fucose transporter; Provisional	99.06
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.04
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.03
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.02
KOG3764|consensus	464		99.01
KOG2532|consensus	466		98.99
PRK11010	491	ampG muropeptide transporter; Validated	98.95
KOG0253|consensus	528		98.94
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.93
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.91
TIGR00901	356	2A0125 AmpG-related permease.	98.89
KOG3626|consensus	735		98.88
PRK11902	402	ampG muropeptide transporter; Reviewed	98.87
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.85
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.85
PRK15011	393	sugar efflux transporter B; Provisional	98.84
PRK09528	420	lacY galactoside permease; Reviewed	98.81
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.78
KOG2504|consensus	509		98.73
KOG2533|consensus	495		98.72
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.72
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.7
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.69
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.62
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.61
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.55
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.53
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.52
KOG2816|consensus	463		98.52
KOG2325|consensus	488		98.51
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.51
KOG2816|consensus	463		98.48
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.42
KOG3762|consensus	618		98.39
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.38
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.35
PRK10429	473	melibiose:sodium symporter; Provisional	98.3
PRK09669	444	putative symporter YagG; Provisional	98.3
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.23
PF13347	428	MFS_2: MFS/sugar transport protein	98.21
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.09
PRK11462	460	putative transporter; Provisional	98.03
KOG2325|consensus	488		97.99
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.96
PRK09848	448	glucuronide transporter; Provisional	97.9
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.85
KOG3810|consensus	433		97.84
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.81
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.79
KOG2563|consensus	480		97.76
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.74
COG2211	467	MelB Na+/melibiose symporter and related transport	97.69
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.67
KOG3098|consensus	461		97.57
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.5
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.37
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.34
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.26
COG0477	338	ProP Permeases of the major facilitator superfamil	97.25
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.22
PF12832	77	MFS_1_like: MFS_1 like family	97.18
KOG0637|consensus	498		97.1
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.93
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.72
KOG4332|consensus	454		96.6
KOG3626|consensus	735		96.58
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.49
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.29
KOG4686|consensus	459		96.07
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.99
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.91
KOG3098|consensus	461		95.88
COG2270	438	Permeases of the major facilitator superfamily [Ge	95.64
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.6
PRK03612	521	spermidine synthase; Provisional	95.54
KOG0637|consensus	498		95.46
COG3202	509	ATP/ADP translocase [Energy production and convers	95.01
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	94.79
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.49
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	94.15
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.07
KOG3574|consensus	510		94.01
KOG1237|consensus	571		93.44
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.23
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	92.34
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.27
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	91.93
KOG4332|consensus	454		91.63
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	91.48
KOG1237|consensus	571		91.47
KOG3762|consensus	618		91.29
KOG1479|consensus	406		90.32
COG4262	508	Predicted spermidine synthase with an N-terminal m	89.95
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	88.61
COG3202	509	ATP/ADP translocase [Energy production and convers	88.24
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	87.62
KOG3574|consensus	510		87.44
KOG1479|consensus	406		86.75
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	83.25
KOG3312|consensus	186		82.98
PF05297	381	Herpes_LMP1: Herpesvirus latent membrane protein 1	82.96
PRK10263	1355	DNA translocase FtsK; Provisional	81.5

>KOG0569|consensus

Probab=100.00  E-value=4.5e-34  Score=286.07  Aligned_cols=341  Identities=25%  Similarity=0.384  Sum_probs=278.4

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc------chHHHHHHHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL------HWRSAAILNLLFPILALCA  160 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l------gWr~~f~i~~i~~li~~i~  160 (553)
                      -||++.|+..+  ..+.+.|+.|..|.+.||....+.+++..+|.+++..++..-      .|++.+.+.++++++.+++
T Consensus       121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~  200 (485)
T KOG0569|consen  121 LGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL  200 (485)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH
Confidence            48999998776  457889999999999999999999999999999997766542      7999999999999999999


Q ss_pred             hccccCCceeeee-cCChHHHHHHHHHHcCCCCCcchHHH-HHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHH
Q psy15864        161 LYFIPESPHWLIS-QGRMQEASASLCWLRGWVTPDKVQTE-LSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYA  238 (553)
Q Consensus       161 ~~~lpEsp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (553)
                      +.++||||+|+.. +++.++|++.++.+++..+.+...++ .++.++.    .    .......+.++.+.++..++...
T Consensus       201 l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~----~----~~~~~~~sl~~~~~~~~lR~~~~  272 (485)
T KOG0569|consen  201 LPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEE----E----LEKKKQISLRQLLKNPTLRRPLL  272 (485)
T ss_pred             HhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHh----c----cccccCCcHHHHhcCcchhHHHH
Confidence            9999999999988 89999999999999986554332222 2221111    1    11112223444455567777788


Q ss_pred             HHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHH
Q psy15864        239 IVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVV  317 (553)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  317 (553)
                      +.+.+..+.++++.+...+|...++...|++.+. .+.....++..++.++++.++.||+|||+++++++.++.+..+++
T Consensus       273 i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~  352 (485)
T KOG0569|consen  273 IGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLM  352 (485)
T ss_pred             HHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999987654 477888899999999999999999999999999999998888877


Q ss_pred             HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        318 AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      ...............+..+++.+++.++++.+.+|+++.+.+|++|+..|+++.++...+.++..++....+.++.+..|
T Consensus       353 ~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g  432 (485)
T KOG0569|consen  353 SIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG  432 (485)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            76543321110001122356677778888899999999999999999999999999999999999999999999998888


Q ss_pred             chhhHHHHHHHHHHHHhhheEEcccCCCCChHHHHHHHhcc
Q psy15864        398 LWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADK  438 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~  438 (553)
                      . ..++++.+.+++.++.+++++||||||+..|+.+..+.+
T Consensus       433 ~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  433 P-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             c-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            5 788888999999999999999999999999988877655

>KOG0254|consensus

Probab=99.97  E-value=5.7e-29  Score=261.44  Aligned_cols=350  Identities=26%  Similarity=0.483  Sum_probs=280.7

Q ss_pred             Ccccccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----chHHHHHHHHHHHHHH
Q psy15864         85 NNEEKGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILA  157 (553)
Q Consensus        85 ~~~~~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----gWr~~f~i~~i~~li~  157 (553)
                      ..-.-||++.|+|.+  ..+++.|++|+.|++.||...++.+.+..+|.+++.+++...     +||.++++..+++++.
T Consensus       143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~  222 (513)
T KOG0254|consen  143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVIL  222 (513)
T ss_pred             HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHH
Confidence            345679999999876  458889999999999999999999999999999998888776     6999999999999999


Q ss_pred             HHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHH
Q psy15864        158 LCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPY  237 (553)
Q Consensus       158 ~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (553)
                      ++..+++||||+|+..+++.++++..+..+++.. .++...+...+........     ........+..++.+..+++.
T Consensus       223 ~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~  296 (513)
T KOG0254|consen  223 ALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLS-PEDVEVELELLKIKLLVEA-----EVAEGKASWGELFSPKVRKRL  296 (513)
T ss_pred             HHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhh-----hcccccccHHHhcCcchHHHH
Confidence            8888889999999999999999999999998854 3334444444431111110     001111135555556677888


Q ss_pred             HHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHH
Q psy15864        238 AIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVV  317 (553)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  317 (553)
                      ++.+.+..+.+++++....+|.+.+++..|......+...+.++..+++++++.++.||+|||+.++.+.+.+.++.+++
T Consensus       297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~  376 (513)
T KOG0254|consen  297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVIL  376 (513)
T ss_pred             HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHH
Confidence            88899999999999999999999999998887555667777888889999999999999999999999999999999988


Q ss_pred             HHHHHhhccc---CCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q psy15864        318 AVYAQFHLSY---GWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD  394 (553)
Q Consensus       318 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~  394 (553)
                      +.........   .....+..++..+++..+++.++++++|.+.+|++|.+.|+.+.++...+.++.+++....+..+..
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~  456 (513)
T KOG0254|consen  377 AVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITE  456 (513)
T ss_pred             HHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8766543321   1234455666677777778889999999999999999999999999999999999888777777666


Q ss_pred             hccchhhHHHHHHHHHHHHh-hheEEcccCCCCChHHHHHHHhccCC
Q psy15864        395 TFHLWGTLYFYAAISVVGTL-YMYFVMPETEGRTLRDIEEHFADKGK  440 (553)
Q Consensus       395 ~~g~~~~~~~~~~~~~~~~~-~~~~~~pet~~~~~~~~~~~~~~~~~  440 (553)
                      ..+....+.++++++.+..+ ..++++|||+++++++++..+.....
T Consensus       457 ~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~  503 (513)
T KOG0254|consen  457 ALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIK  503 (513)
T ss_pred             hccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCc
Confidence            55434566677777777776 78899999999999999998776543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=9.7e-29  Score=259.63  Aligned_cols=327  Identities=17%  Similarity=0.202  Sum_probs=215.6

Q ss_pred             ccccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhccc------------------------
Q psy15864         87 EEKGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF------------------------  140 (553)
Q Consensus        87 ~~~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~------------------------  140 (553)
                      ---+|+++|++.+  .+..++|++|++|++.||+++++..++..+|.+++++++..                        
T Consensus       118 ~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (502)
T TIGR00887       118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVP  197 (502)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence            4478999988765  57788999999999999999999999999988887765421                        


Q ss_pred             ---cchHHHHHHHHHHHHHHHHHhccccCCceeeeecCChH-HHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcC
Q psy15864        141 ---LHWRSAAILNLLFPILALCALYFIPESPHWLISQGRMQ-EASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLG  216 (553)
Q Consensus       141 ---lgWr~~f~i~~i~~li~~i~~~~lpEsp~~l~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (553)
                         .+||++|.+.++++++.+++++++||||+|+..+++.+ ++.+.+.+......... .++.+....    +      
T Consensus       198 ~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~----~------  266 (502)
T TIGR00887       198 AVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKAST----A------  266 (502)
T ss_pred             hhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccC-cccccchhc----c------
Confidence               26999999999999888888888999999998887764 46666665543211111 011100000    0      


Q ss_pred             CCCCCChhhhhhhhhcc---hhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCChH-------------HHHHHHH
Q psy15864        217 KDGQRRPNYRMYMRRTF---LLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPY-------------FATLLLG  280 (553)
Q Consensus       217 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------~~~~~~~  280 (553)
                      .. .....++.++++..   ..+..+...+.++.....++....|.|.++...|++....             ...++..
T Consensus       267 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (502)
T TIGR00887       267 VE-VPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIAL  345 (502)
T ss_pred             cc-chhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHH
Confidence            00 00123444443211   1122222222333333344556667888887777653210             1233344


Q ss_pred             HHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeecc
Q psy15864        281 VAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGE  360 (553)
Q Consensus       281 i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  360 (553)
                      ++.+++.+++++++||+|||++++++.++++++++++++....     .... ...+..++..++.+.+..++.+++.+|
T Consensus       346 ~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E  419 (502)
T TIGR00887       346 AGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH-----LSTH-GFLAIYVLAQFFANFGPNATTFIVPGE  419 (502)
T ss_pred             HHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh-----cchh-HHHHHHHHHHHHHhcCCCchhhhhhhc
Confidence            5677788999999999999999888877777666655543210     0111 112222222233345556667788999


Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc----------cchhhHHHHHHHHHHHHhhheEEcccCCCCChHH
Q psy15864        361 VFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF----------HLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRD  430 (553)
Q Consensus       361 ~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~  430 (553)
                      ++|++.|+++.|+.+.++++++++++.+++++.+..          +....++++++++++..++ ++++|||++++++|
T Consensus       420 ~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~lee  498 (502)
T TIGR00887       420 VFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEE  498 (502)
T ss_pred             cCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHh
Confidence            999999999999999999999999999999988742          3334566677766666554 46789999999887


Q ss_pred             HH
Q psy15864        431 IE  432 (553)
Q Consensus       431 ~~  432 (553)
                      ++
T Consensus       499 i~  500 (502)
T TIGR00887       499 LS  500 (502)
T ss_pred             hh
Confidence            65

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.96  E-value=1.1e-28  Score=263.31  Aligned_cols=328  Identities=20%  Similarity=0.206  Sum_probs=226.3

Q ss_pred             cccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhccc-----------------cchHHHHH
Q psy15864         88 EKGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----------------LHWRSAAI  148 (553)
Q Consensus        88 ~~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~-----------------lgWr~~f~  148 (553)
                      --.|+++|++.+  .++++++++|++|++.||+.++++.+++.+|.+++++++..                 .+||++|+
T Consensus       259 lv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~  338 (742)
T TIGR01299       259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI  338 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHH
Confidence            346778787653  56778999999999999999999999999999888764321                 16999999


Q ss_pred             HHHHHHHHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcc--hHH--HHHHHHHHHHHHHH-HhcCCCC----
Q psy15864        149 LNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDK--VQT--ELSQITKAIEESEL-KRLGKDG----  219 (553)
Q Consensus       149 i~~i~~li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~-~~~~~~~----  219 (553)
                      +.++++++++++++++||||+|+..+++.+++.+.+++++..+....  ...  ....+......... .......    
T Consensus       339 i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (742)
T TIGR01299       339 VCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQ  418 (742)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhh
Confidence            99998888888888899999999999999999999999887653211  111  11111110000000 0000000    


Q ss_pred             -----------CCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhh----------------------
Q psy15864        220 -----------QRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESI----------------------  266 (553)
Q Consensus       220 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  266 (553)
                                 .....+..+++++++++.++++++ +++...+++.+..|+|.++...                      
T Consensus       419 ~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~-wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (742)
T TIGR01299       419 RCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGV-WFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSF  497 (742)
T ss_pred             cchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhcccc
Confidence                       000124446666666666555554 5556667888899999875331                      


Q ss_pred             --------------------CC-----C----------------------------------------------------
Q psy15864        267 --------------------HA-----P----------------------------------------------------  269 (553)
Q Consensus       267 --------------------g~-----~----------------------------------------------------  269 (553)
                                          |+     .                                                    
T Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  577 (742)
T TIGR01299       498 NFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFL  577 (742)
T ss_pred             ccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhcccc
Confidence                                00     0                                                    


Q ss_pred             ------------C-----ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCC
Q psy15864        270 ------------L-----DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSP  332 (553)
Q Consensus       270 ------------~-----~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  332 (553)
                                  .     ..++..++.+++.++|.+++|+++||+|||+++++++++.+++++++++         ..+.
T Consensus       578 ~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~---------~~s~  648 (742)
T TIGR01299       578 HNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF---------GNSE  648 (742)
T ss_pred             ccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH---------HccH
Confidence                        0     0123344566889999999999999999999998888888888777665         3334


Q ss_pred             hhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHH
Q psy15864        333 LVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVG  412 (553)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~  412 (553)
                      ..+++++++++++.+..+. +.+++++|++|++.|++++|+.+.++.+|++++|++++.+... +...++++++++.+++
T Consensus       649 ~~ll~~~~l~g~~~~~~~~-~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~  726 (742)
T TIGR01299       649 SAMIALLCLFGGLSIAAWN-ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG  726 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence            4455555666666555554 4469999999999999999999999999999999999887764 3344555555555554


Q ss_pred             HhhheEEcccCCCCCh
Q psy15864        413 TLYMYFVMPETEGRTL  428 (553)
Q Consensus       413 ~~~~~~~~pet~~~~~  428 (553)
                      +++. +++|||+++.+
T Consensus       727 ~ll~-~~LPET~~~~l  741 (742)
T TIGR01299       727 GLLA-LKLPDTRGQVL  741 (742)
T ss_pred             HHHH-HhCCCCccccc
Confidence            4444 46699988753

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.95  E-value=1.4e-26  Score=242.66  Aligned_cols=329  Identities=24%  Similarity=0.389  Sum_probs=228.1

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcc------------ccchHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFP  154 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~------------~lgWr~~f~i~~i~~  154 (553)
                      -+|+++|++.+  .+.+.++++|++|+++||+++++.+.+..+|.+++++++.            ..+||++|++.++++
T Consensus       125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~  204 (479)
T PRK10077        125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPA  204 (479)
T ss_pred             HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHH
Confidence            67999999765  5678899999999999999999999999999998876543            238999999998888


Q ss_pred             HHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcch
Q psy15864        155 ILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFL  234 (553)
Q Consensus       155 li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (553)
                      ++.++..+++||+|+|+..+++.+++...++++.....   .....++..........          .. ...+. ...
T Consensus       205 ~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~-~~~~~-~~~  269 (479)
T PRK10077        205 LLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL---ATQALQEIKHSLDHGRK----------TG-GKLLM-FGV  269 (479)
T ss_pred             HHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh---HHHHHHHHHHHHHHhhh----------hh-hhhcc-hhH
Confidence            88877777899999988777777777766665543211   11111222111110000          00 00000 001


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAAC  313 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~  313 (553)
                      ...++.+....+....+++...+|.|.++...|.+... .+..++.+++.+++.+++++++||+|||++++.+.++++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~  349 (479)
T PRK10077        270 GVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG  349 (479)
T ss_pred             HHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence            11122222333444455666677888888877776543 45556677888999999999999999999999988888887


Q ss_pred             HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864        314 FIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML  393 (553)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~  393 (553)
                      .+++......     ........+..++++++.+..+.++.+++++|.+|++.|++++|+.+.+.++++++++.+++.+.
T Consensus       350 ~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        350 MFSLGTAFYT-----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             HHHHHHHHhc-----CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            7766543210     11122233344444444444555666799999999999999999999999999999887776544


Q ss_pred             ------hhccchhhHHHHHHHHHHHHhhheEEcccCCCCChHHHHHHHhc
Q psy15864        394 ------DTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFAD  437 (553)
Q Consensus       394 ------~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~  437 (553)
                            +..+++..+.++++++++++++.+++.||+++++.++.+.++..
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  474 (479)
T PRK10077        425 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP  474 (479)
T ss_pred             hccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence                  45666667777777777777777788999999998887776644

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.95  E-value=9.7e-32  Score=279.40  Aligned_cols=341  Identities=29%  Similarity=0.507  Sum_probs=252.5

Q ss_pred             CCCcccccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----c---hHHHHHHHHHH
Q psy15864         83 NNNNEEKGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----H---WRSAAILNLLF  153 (553)
Q Consensus        83 ~~~~~~~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----g---Wr~~f~i~~i~  153 (553)
                      +.-----+|+++|++.+  .++++.|+.|..|++.||+..++.++++.+|.+++.+++..+    +   ||+.+++.+++
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~  180 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIP  180 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34456789999999865  668889999999999999999999999999999988876644    4   99999999999


Q ss_pred             HHHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhc-
Q psy15864        154 PILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRT-  232 (553)
Q Consensus       154 ~li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  232 (553)
                      +++.++..+++||||+|+..+++.++|++.++++++.....   .+.++......        ........+..+++.+ 
T Consensus       181 ~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~  249 (451)
T PF00083_consen  181 SLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED---EEIEEIKAEKK--------ESQESKASWRDLFRNKK  249 (451)
T ss_pred             cccccccccccccccceeccccccccccccccccccccccc---ccccccccccc--------cccccceeeeecccccc
Confidence            99888888889999999999999999999988865432111   11111111100        0000013344444443 


Q ss_pred             chhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHH
Q psy15864        233 FLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAA  312 (553)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i  312 (553)
                      .+++.++.+.+..+..+.++....+|.+.++...+.+.. .....+.++..+++.+++.++.||+|||++++++.+++++
T Consensus       250 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~  328 (451)
T PF00083_consen  250 YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAI  328 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            355566666666677677777788888888877776555 4445566677788888889999999999999999888887


Q ss_pred             HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        313 CFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      +.+.++.........+.......+++..+...+++.+++++++.+++|++|++.|+++.++...++++++++++.+.+++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~  408 (451)
T PF00083_consen  329 CSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYL  408 (451)
T ss_pred             cccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77766511111000000012333334444444556677788889999999999999999999999999999999988888


Q ss_pred             HhhccchhhHHHHHHHHHHHHhhheEEcccCCCCChHHHHHHH
Q psy15864        393 LDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHF  435 (553)
Q Consensus       393 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~  435 (553)
                      .+..+.+..+.++++++++..++.++++|||++++++|+++++
T Consensus       409 ~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  409 FNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             cccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            8777656778888888888889999999999999999988753

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0253|consensus

Probab=99.95  E-value=2.8e-26  Score=213.82  Aligned_cols=317  Identities=17%  Similarity=0.192  Sum_probs=229.0

Q ss_pred             ccccccchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhccccCCce
Q psy15864         94 YKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYFIPESPH  169 (553)
Q Consensus        94 ~G~ga~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~lpEsp~  169 (553)
                      +|+|+ .+...++-.|..|..+|+..+-.. ..+.+|.+....++...    ||||..++.+.+..+.+.+.+++|||||
T Consensus       178 ~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpR  255 (528)
T KOG0253|consen  178 FGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPR  255 (528)
T ss_pred             ccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcc
Confidence            34444 677778889999999999888777 88899988887776554    9999999999888888888899999999


Q ss_pred             eeeecCChHHHHHHHHHHcCCCCCcch--------HHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        170 WLISQGRMQEASASLCWLRGWVTPDKV--------QTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       170 ~l~~~~~~~~a~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      |+..+++.++|.+.+.++.+.|..+-.        ..+.++....+.+.   ......+.+.....++.+.+++..++..
T Consensus       256 f~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~---~~~a~ke~rg~~~nLlsp~lrkttlllw  332 (528)
T KOG0253|consen  256 FYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDS---KSSAAKEVRGGTTNLLSPKLRKTTLLLW  332 (528)
T ss_pred             hhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhh---hhccccccccchHhhcChHHHHHHHHHH
Confidence            999999999999999988876653311        11111111111111   1112233445566777777777776665


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHhhC---------------------CCCChHHHHHHHHHHHHHHHHHHhhhhcccCCc
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFESIH---------------------APLDPYFATLLLGVAELGGALLCVVLIHYTGKR  300 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~g---------------------~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr  300 (553)
                      .+++. ....++........+++...                     .....+.-.++..+..+.|.++.+++.||+|||
T Consensus       333 ~iwfg-nafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK  411 (528)
T KOG0253|consen  333 RIWFG-NAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK  411 (528)
T ss_pred             HHHHh-hHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch
Confidence            55443 33334444444444443321                     011223456778899999999999999999999


Q ss_pred             ceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHH
Q psy15864        301 PLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYI  380 (553)
Q Consensus       301 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~  380 (553)
                      +++..++++++++.+++..         ........+..+...++..+++... |+|..|++|+..|++++|.+..+..+
T Consensus       412 kTMal~l~~f~iflfll~~---------c~~rn~~tvllf~arafisg~fqva-YvYtPEVyPTavRatgvGtcSsmaRI  481 (528)
T KOG0253|consen  412 KTMALSLILFGIFLFLLTT---------CKTRNAYTVLLFTARAFISGAFQVA-YVYTPEVYPTAVRATGVGTCSSMARI  481 (528)
T ss_pred             hHHHHHHHHHHHHHHHHHH---------hcCcchhHHHHHHHHHHHhchheEE-EEecCcccchhhhhcchhhhhhHHhh
Confidence            9999999888888877766         3344444555566666666666555 79999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccCCCCCh
Q psy15864        381 FAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTL  428 (553)
Q Consensus       381 ~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  428 (553)
                      |+++.|.+.  +........+.+++.+++++..+...++--||+||.+
T Consensus       482 ggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  482 GGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             hhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            999999877  4444445667778888888888888777779999864

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=2.2e-25  Score=233.38  Aligned_cols=297  Identities=15%  Similarity=0.143  Sum_probs=186.3

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhc----c--------ccchHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG----S--------FLHWRSAAILNLLFP  154 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~----~--------~lgWr~~f~i~~i~~  154 (553)
                      -.|+++|++.+  .+.+.++++|++|+++||++.++..++..+|.++++.+.    .        ..|||++|++.++++
T Consensus       123 ~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~  202 (490)
T PRK10642        123 LCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLG  202 (490)
T ss_pred             HHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHH
Confidence            46899998754  567889999999999999999999988888887776432    1        238999999988777


Q ss_pred             HHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcch
Q psy15864        155 ILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFL  234 (553)
Q Consensus       155 li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (553)
                      +++++++.++||+|+|...+++.++..       .    .                     .........+..++++ .+
T Consensus       203 l~~~~~~~~~~esp~~~~~~~~~~~~~-------~----~---------------------~~~~~~~~~~~~~~~~-~~  249 (490)
T PRK10642        203 IIGLYLRHALEETPAFQQHVDKLEQGD-------R----E---------------------GLQDGPKVSFKEIATK-HW  249 (490)
T ss_pred             HHHHHHHHcCCCChhHHHHHHhhhhhc-------c----c---------------------cccccccCCHHHHHHH-hH
Confidence            776666677999998642111100000       0    0                     0000001123333332 12


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAA  312 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i  312 (553)
                      +..++.. ...+.....++.+..|+|.++.. .+++... .+..+...++.+++.+++|+++||+|||+.++++.++.++
T Consensus       250 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~  328 (490)
T PRK10642        250 RSLLTCI-GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFV  328 (490)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            2222222 22233334556666788888753 4655433 3445566788889999999999999999987776654443


Q ss_pred             HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        313 CFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      +.+.+.....      ..+...+++++++.+++.+...+... .++.|++|++.|++++|+.+.++.+++.++|.+.+++
T Consensus       329 ~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~g~~~-~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l  401 (490)
T PRK10642        329 LAIPAFILIN------SNVIGLIFAGLLMLAVILNCFTGVMA-STLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWL  401 (490)
T ss_pred             HHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332221111      23344455556666665554544443 7778999999999999987777888889999999988


Q ss_pred             HhhccchhhHHHHHHHHHHHHhhheEEcccCCCC
Q psy15864        393 LDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGR  426 (553)
Q Consensus       393 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~  426 (553)
                      .+..+.+.....+..++.++.++..+++|||+++
T Consensus       402 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~  435 (490)
T PRK10642        402 VESTQNLMMPAYYLMVVAVIGLITGVTMKETANR  435 (490)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            8765533333323333334444444567998554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.93  E-value=2.2e-24  Score=225.79  Aligned_cols=336  Identities=28%  Similarity=0.518  Sum_probs=229.4

Q ss_pred             ccccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhc---cc----cchHHHHHHHHHHHHHH
Q psy15864         87 EEKGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG---SF----LHWRSAAILNLLFPILA  157 (553)
Q Consensus        87 ~~~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~---~~----lgWr~~f~i~~i~~li~  157 (553)
                      ---+|+++|++.+  .+...++++|++|+++|+++++++.++..+|.+++++++   ..    .+||++|++.++.+++.
T Consensus       130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~  209 (481)
T TIGR00879       130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL  209 (481)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH
Confidence            4457899998765  345678999999999999999999999999999999988   43    29999999987777777


Q ss_pred             HHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchH-HHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhc--ch
Q psy15864        158 LCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQ-TELSQITKAIEESELKRLGKDGQRRPNYRMYMRRT--FL  234 (553)
Q Consensus       158 ~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  234 (553)
                      ++..+++||+|+++..+++.+++.+............... .........   ..... ....   ..+..++...  ..
T Consensus       210 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~---~~~~~~~~~~~~~~  282 (481)
T TIGR00879       210 FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIK---RSIEK-RSVQ---PSWGSLFSSTRRIR  282 (481)
T ss_pred             HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH---HHHHH-hhcc---ccHHHHHhcCchhH
Confidence            7777789999988766666665555554443322211111 110100000   00000 0000   1122222211  23


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAAC  313 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~  313 (553)
                      .+.++..++.++........+.++.|.++...|++... .+...+..++.+++.+++|+++||+|||+.+.+++++++++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            44455555555555555666777888888877776543 35666778889999999999999999999988887777777


Q ss_pred             HHHHHHHHHhhcccC-CCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        314 FIVVAVYAQFHLSYG-WDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       314 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      .+++.+......... ....+..++..+++..+.+.+..++..++++|.+|++.|+++.++.+...++++++++.+.+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~  442 (481)
T TIGR00879       363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM  442 (481)
T ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666653221100000 0012333344444555555666677778889999999999999999999999999999999999


Q ss_pred             HhhccchhhHHHHHHHHHHHHhhheEEcccCCCCChH
Q psy15864        393 LDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLR  429 (553)
Q Consensus       393 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~  429 (553)
                      .+..++...++++++++++.+++.+++.||+++++.+
T Consensus       443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  479 (481)
T TIGR00879       443 LESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE  479 (481)
T ss_pred             HHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence            8888877778888888888888888888998876654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=99.93  E-value=5.5e-25  Score=232.05  Aligned_cols=314  Identities=19%  Similarity=0.288  Sum_probs=209.1

Q ss_pred             ccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHhccccCC
Q psy15864         91 TFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-HWRSAAILNLLFPILALCALYFIPES  167 (553)
Q Consensus        91 r~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-gWr~~f~i~~i~~li~~i~~~~lpEs  167 (553)
                      |++.|++.+  .++..+++.|++|+++|+.+.+++.+++.+|.+++++++..+ +||+.|++.++++++.+++.+++||+
T Consensus       187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~es  266 (505)
T TIGR00898       187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPES  266 (505)
T ss_pred             HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            555555543  345568899999999999999999999999999999988776 89999999999988887777889999


Q ss_pred             ceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHH
Q psy15864        168 PHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIG  247 (553)
Q Consensus       168 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (553)
                      |+|+..+++.+++.+.+++....+...........   ...... .    .......+..+++.+..+...+...+.++.
T Consensus       267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~---~~~~~~-~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  338 (505)
T TIGR00898       267 PRWLISQGRIEEALKILQRIAKINGKKLPAEVLSL---SLEKDL-S----SSKKQYSFLDLFRTPNLRKTTLCLMMLWFT  338 (505)
T ss_pred             hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh---hhhhhh-h----hccCCCcHHHHhCChHHHHHHHHHHHHHHH
Confidence            99999999999988887776544332211111100   000000 0    000112344455444444333333333333


Q ss_pred             hhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhccc
Q psy15864        248 QFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSY  327 (553)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~  327 (553)
                      ....++.+..+.+    ..+  .+.....++.+++.+++.+++++++||+|||+.+.+++++.+++.+++.+..      
T Consensus       339 ~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~------  406 (505)
T TIGR00898       339 TAFSYYGLVLDLG----NLG--GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP------  406 (505)
T ss_pred             HHHHHHHHhcccc----ccC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC------
Confidence            3222222222222    122  2345556677888899999999999999999999888877777766655421      


Q ss_pred             CCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHH
Q psy15864        328 GWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAA  407 (553)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~  407 (553)
                       ....+..++..++.+++.+..+ ++.+++.+|++|++.|++++|+.+.++.++++++|++.+ + ...+....++++++
T Consensus       407 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~  482 (505)
T TIGR00898       407 -VDLYFLRTALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGG  482 (505)
T ss_pred             -CCchHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHH
Confidence             1122334444444444444444 344589999999999999999999999999999998888 3 33444556666666


Q ss_pred             HHHHHHhhheEEcccCCCCChH
Q psy15864        408 ISVVGTLYMYFVMPETEGRTLR  429 (553)
Q Consensus       408 ~~~~~~~~~~~~~pet~~~~~~  429 (553)
                      +.++..++. +++|||++++++
T Consensus       483 ~~~~~~~~~-~~lpet~~~~l~  503 (505)
T TIGR00898       483 LALLAGILT-LFLPETKGVPLP  503 (505)
T ss_pred             HHHHHHHHH-HcCcCCCCCCCC
Confidence            655555544 578999988764

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.88  E-value=9e-23  Score=195.86  Aligned_cols=285  Identities=16%  Similarity=0.152  Sum_probs=197.7

Q ss_pred             hhhhhhhccCcccccchhchhhhhHHHHHHHHHhhc--ccc----chHHHHHHHHHHHHHHHH-HhccccCCceeeeecC
Q psy15864        103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG--SFL----HWRSAAILNLLFPILALC-ALYFIPESPHWLISQG  175 (553)
Q Consensus       103 ~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~--~~l----gWr~~f~i~~i~~li~~i-~~~~lpEsp~~l~~~~  175 (553)
                      +...++.|+|+++||++.++++++.++|..+.+++.  +.+    +||..|++.++++++..+ +++.++++|+-.- -.
T Consensus       138 ~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~G-LP  216 (448)
T COG2271         138 CARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG-LP  216 (448)
T ss_pred             HHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccC-CC
Confidence            337889999999999999999999999999988877  444    899999999999988754 4455888885210 00


Q ss_pred             ChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHH
Q psy15864        176 RMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTL  255 (553)
Q Consensus       176 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (553)
                      ..++-+                   .+-.+.. .     +....+....+..+.+..+..+.+++.++..+..+..-+.+
T Consensus       217 ~ie~~~-------------------~d~~e~~-~-----~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi  271 (448)
T COG2271         217 PIEEYR-------------------GDPLEIY-E-----EEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGI  271 (448)
T ss_pred             CHHHhh-------------------cCchhhh-h-----hhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            111100                   0000000 0     00111113455666777777788888888888888889999


Q ss_pred             HhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhccc--CCcceeecchhHHHHHHHHHHHHHHhhcccCCCC
Q psy15864        256 QTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYT--GKRPLALISTGGSAACFIVVAVYAQFHLSYGWDS  331 (553)
Q Consensus       256 ~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~--Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  331 (553)
                      ..|.|.++.+ .+++. ++.+..+++-+++++|++++||++||+  |||....+.+.+....+++.....      +..+
T Consensus       272 ~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~------~~~~  345 (448)
T COG2271         272 NDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA------PNGS  345 (448)
T ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC------CCcc
Confidence            9999998855 56654 445778888899999999999999996  677665444333333333222211      1234


Q ss_pred             ChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHH-HHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q psy15864        332 PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYI-FAFAVNKLYYPMLDTFHLWGTLYFYAAISV  410 (553)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~-~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~  410 (553)
                      .++..++.++.|++..... .+.-....|+.|.+.-|++.|+...++++ |+..+....+++.+.+||...+.++.+.++
T Consensus       346 ~~l~~~~l~~iGf~IyGPq-mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~  424 (448)
T COG2271         346 YLLDAILLFIIGFLIYGPQ-MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAAL  424 (448)
T ss_pred             HHHHHHHHHHHHHHHhhHH-HHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHH
Confidence            4566666666666553333 33347788999999999999999999999 888888888888888888888877776666


Q ss_pred             HHHhhheEEc
Q psy15864        411 VGTLYMYFVM  420 (553)
Q Consensus       411 ~~~~~~~~~~  420 (553)
                      ++.+++..+.
T Consensus       425 l~~lll~~~~  434 (448)
T COG2271         425 LAILLLLPVW  434 (448)
T ss_pred             HHHHHHHHHH
Confidence            6655554433

>KOG0252|consensus

Probab=99.88  E-value=5.8e-23  Score=197.93  Aligned_cols=322  Identities=17%  Similarity=0.195  Sum_probs=223.2

Q ss_pred             ccccccccc--ccchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-------------------chHHHH
Q psy15864         89 KGTFLYKMA--APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-------------------HWRSAA  147 (553)
Q Consensus        89 ~gr~~~G~g--a~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-------------------gWr~~f  147 (553)
                      .=||++|+|  +.+|++.++.+|.+..++||..++.+.+...+|.+.|.+++..+                   -||..|
T Consensus       149 ~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~  228 (538)
T KOG0252|consen  149 FFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIF  228 (538)
T ss_pred             HHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHH
Confidence            347776665  56999999999999999999999999888888888777665433                   399999


Q ss_pred             HHHHHHHHHHHHHhccccCCceeeeecC-ChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCC---h
Q psy15864        148 ILNLLFPILALCALYFIPESPHWLISQG-RMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR---P  223 (553)
Q Consensus       148 ~i~~i~~li~~i~~~~lpEsp~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  223 (553)
                      .+.+++++++++.++.+|||++|-.... +.+++.....+.   ...            .+..+... ........   .
T Consensus       229 glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~---~~~------------~~~~~~~~-~~~~~~~~~~~~  292 (538)
T KOG0252|consen  229 GLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKV---LSV------------DIEAESTA-ESDVPPPSNSFG  292 (538)
T ss_pred             HHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccc---ccc------------ccchhhcc-ccCCCCcccccc
Confidence            9999999999999999999998852221 222222111000   000            00000000 00011111   1


Q ss_pred             hhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCChH----------HHHHHHHHHHHHHHHHHhhh
Q psy15864        224 NYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPY----------FATLLLGVAELGGALLCVVL  293 (553)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~~i~~~~g~~~~g~l  293 (553)
                      .+...+... .-..++..+..++..-..++....+...+++..+......          +..++..++.+.|.++..++
T Consensus       293 ~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~  371 (538)
T KOG0252|consen  293 LFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYF  371 (538)
T ss_pred             hHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEE
Confidence            122222222 2245566667777777788888888888888766532221          22333445556677788889


Q ss_pred             hcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhH
Q psy15864        294 IHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGA  373 (553)
Q Consensus       294 ~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~  373 (553)
                      +|++||+++.+.+++++.+..++++.....     ..+...+++...+..++..++.....+++.+|++|++.||++.|+
T Consensus       372 id~iGRk~iq~~GF~~~~i~~~~~~~~y~~-----~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGI  446 (538)
T KOG0252|consen  372 IDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ-----LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGI  446 (538)
T ss_pred             eehhhhHHHHHhhHHHHHHHHHHHcCCccc-----ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhH
Confidence            999999999999999998888887763321     113334455555666666778888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHh-----hccchhhHHHHHHHHHHHHhhheEEcccCCCCChHHHHH
Q psy15864        374 SGSSSYIFAFAVNKLYYPMLD-----TFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEE  433 (553)
Q Consensus       374 ~~~~~~~~~~i~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~  433 (553)
                      ..+.+.+|++++...+.++.+     ..+....++++++++.+..++. +++|||+++++++++.
T Consensus       447 sAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~~  510 (538)
T KOG0252|consen  447 SAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEISN  510 (538)
T ss_pred             HHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccCHHHhcC
Confidence            999999999999999999888     5666777777777766665554 6678999999998743

>PRK09952 shikimate transporter; Provisional

Probab=99.87  E-value=3.6e-21  Score=198.60  Aligned_cols=289  Identities=12%  Similarity=0.094  Sum_probs=173.5

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcc------------ccchHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFP  154 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~------------~lgWr~~f~i~~i~~  154 (553)
                      -.|+++|++.+  .+.+.++++|++|+++||+.++....++.+|.+++..+..            ..|||++|++.+++.
T Consensus       130 ~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~  209 (438)
T PRK09952        130 TLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV  209 (438)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence            36999999765  4677899999999999999999999999999988865432            248999999998887


Q ss_pred             HHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcch
Q psy15864        155 ILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFL  234 (553)
Q Consensus       155 li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (553)
                      ++++++...+||+|+|...+.+.++.                                      .......+.+.+.+  
T Consensus       210 l~~~~l~~~~~es~~~~~~~~~~~~~--------------------------------------~~~~~~~~~l~~~~--  249 (438)
T PRK09952        210 LIALWVRNGMEESAEFEQQQHEQAAA--------------------------------------KKRIPVIEALLRHP--  249 (438)
T ss_pred             HHHHHHHHhCCCChhHHHHHhhcccc--------------------------------------cccCCHHHHHHHch--
Confidence            76666666689998753211100000                                      00000111122111  


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHHH-hhCCCCChH-HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFE-SIHAPLDPY-FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAA  312 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i  312 (553)
                       +.+.......+......+....|.|.++. ..+.+.... ....+.++..+++.++.|+++||+|||++++.++++.++
T Consensus       250 -~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~  328 (438)
T PRK09952        250 -GAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTL  328 (438)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence             11122222222233334445556666654 345443322 334455677788889999999999999987776655544


Q ss_pred             HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHH-HHHHHHHHHhHH
Q psy15864        313 CFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSY-IFAFAVNKLYYP  391 (553)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~-~~~~i~~~~~~~  391 (553)
                      +.+.+.....     .....+.+++..++.+++.+..... .+++++|.+|++.|+++.++.+.++. +++.++|.+.+.
T Consensus       329 ~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~  402 (438)
T PRK09952        329 SAFPFFMALE-----AQSIFWIVFFSIMLANIAHDMVVCV-QQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAA  402 (438)
T ss_pred             HHHHHHHHHH-----cCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            4333322111     0112223233334444444444333 35888999999999999998776655 788999999999


Q ss_pred             HHhhcc-chhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        392 MLDTFH-LWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       392 ~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      +.+..+ .|.....+.+++.++..+..+.++|++
T Consensus       403 l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~  436 (438)
T PRK09952        403 LVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ  436 (438)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence            887543 233333333333344333334456643

>KOG0255|consensus

Probab=99.86  E-value=2.7e-20  Score=196.87  Aligned_cols=319  Identities=18%  Similarity=0.201  Sum_probs=209.8

Q ss_pred             ccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhccc-c-chHHHHHHHHHHHHHHHHHhccccC
Q psy15864         91 TFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-L-HWRSAAILNLLFPILALCALYFIPE  166 (553)
Q Consensus        91 r~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~-l-gWr~~f~i~~i~~li~~i~~~~lpE  166 (553)
                      ||+.|++.+  ..++.++++|++++++|+.++++ ......|..+++.++++ . +||+.+++..+++++.++++++.||
T Consensus       178 Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~E  256 (521)
T KOG0255|consen  178 RFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPE  256 (521)
T ss_pred             HHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCc
Confidence            466676554  45667889999999999999999 54444444555444444 4 8999999999999998888777789


Q ss_pred             CceeeeecCChHHHHHHHHHHcCCCCCc-chHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhc-chhHHHHHHHHH
Q psy15864        167 SPHWLISQGRMQEASASLCWLRGWVTPD-KVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRT-FLLPYAIVTSLF  244 (553)
Q Consensus       167 sp~~l~~~~~~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  244 (553)
                      ||||+..+++.+++.+.++++...+... .......... ......    .........+..+++.+ .+...+...+.+
T Consensus       257 s~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~  331 (521)
T KOG0255|consen  257 SPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLEL-LLRPLK----LLFTEPKISFLDLFRTPRLRYRTLYLLFIW  331 (521)
T ss_pred             ChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHH-HhhHhh----hhccCCCCchhhhhcCHHHHHHHHHHHHHH
Confidence            9999999999999999998886544211 1111111111 000000    01111112244444444 333333333332


Q ss_pred             HHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhh
Q psy15864        245 FIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFH  324 (553)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~  324 (553)
                       +.....++.+      .+...+++.+......+.++..+.+....+.+.|++|||..+..+.++..+++++.++...  
T Consensus       332 -~~~~~~y~gl------~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~--  402 (521)
T KOG0255|consen  332 -FVFSLVYYGL------SLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD--  402 (521)
T ss_pred             -HHHhHHHHhh------hhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc--
Confidence             2222212222      2222334455666666667788888888899999999999999999999999888887542  


Q ss_pred             cccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHH
Q psy15864        325 LSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYF  404 (553)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~  404 (553)
                          ....+...+...+..++.+.++..+ +.+.+|++|+..|+.+.+.......++++++|.+...... ......+.+
T Consensus       403 ----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~  476 (521)
T KOG0255|consen  403 ----DLGGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLIL  476 (521)
T ss_pred             ----cchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHH
Confidence                1111244555555666666666666 6999999999999999999999999999999877654433 222222233


Q ss_pred             HHHHHHHHHhhheEEcccCCCCChHH
Q psy15864        405 YAAISVVGTLYMYFVMPETEGRTLRD  430 (553)
Q Consensus       405 ~~~~~~~~~~~~~~~~pet~~~~~~~  430 (553)
                      ++.+..+.+++..+++|||++..+.+
T Consensus       477 ~~~~~~l~~~~~~~~lpet~~~~l~~  502 (521)
T KOG0255|consen  477 FGWLALLLGLLSLLLLPETKGKPLPG  502 (521)
T ss_pred             HHHHHHHHHHHHHhcCcccCCCCCch
Confidence            46666666667778999999988743

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.86  E-value=1.1e-20  Score=189.57  Aligned_cols=269  Identities=14%  Similarity=0.101  Sum_probs=170.1

Q ss_pred             ccccccccccccc-hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHH-Hh
Q psy15864         88 EKGTFLYKMAAPL-VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALC-AL  161 (553)
Q Consensus        88 ~~gr~~~G~ga~~-~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i-~~  161 (553)
                      --.|+++|+|.+. ....+.++|++|+++|++++++..++..+|.+++++++..+    |||+.|++.++++++..+ .+
T Consensus        83 ~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903        83 LACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            3468999988763 33456679999999999999999999999999998887766    999999998888877644 44


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      +++||+|++...  +.+                 ..    +..                  ..++.++++    +.++..
T Consensus       163 ~~lp~~p~~~~~--~~~-----------------~~----~~~------------------~~~~~ll~~----~~~~~~  197 (368)
T TIGR00903       163 AALPALPFQAAE--GFG-----------------FK----DAV------------------KEFGALAGR----KDLWII  197 (368)
T ss_pred             HHcCCCCCCCCC--Ccc-----------------hH----HHH------------------HHHHHHHcC----hhHHHH
Confidence            558999875210  000                 00    000                  011222222    223444


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCc---ceeec-chhHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKR---PLALI-STGGSAACFIVV  317 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr---~~l~~-~~~~~~i~~~~~  317 (553)
                      .+..++....++.+..|+|.++.+.+++......   ..+..+.|.+..++++||+.||   ..... ..++.+++.+++
T Consensus       198 ~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~---~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~  274 (368)
T TIGR00903       198 GAILGFGVALFDNLAIWLEAALRPAGLEDIAGDA---VALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLAL  274 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHH---HHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4455556666777788999999877765432233   3333344445567888887654   22221 222222222222


Q ss_pred             HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        318 AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      ..         ..+.+..++..++.+++....+ +..+++.+|++|++.||+++|+.+..++++++++|.+.+.+..  +
T Consensus       275 ~~---------~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~  342 (368)
T TIGR00903       275 AF---------ELNRLALFAFIGIAGLLMLPAY-AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S  342 (368)
T ss_pred             HH---------ccccHHHHHHHHHHHHhhhhhH-HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C
Confidence            21         2233333444444444443333 3345889999999999999999999999999999999987773  4


Q ss_pred             chhhHHHHHHHHHHHHhhh
Q psy15864        398 LWGTLYFYAAISVVGTLYM  416 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~  416 (553)
                      ....+.++++..++.++..
T Consensus       343 ~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       343 AEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455666666655555554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.86  E-value=1.5e-20  Score=194.00  Aligned_cols=284  Identities=16%  Similarity=0.143  Sum_probs=165.8

Q ss_pred             cccccccccc--cchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcc------------ccchHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAA--PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFP  154 (553)
Q Consensus        89 ~gr~~~G~ga--~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~------------~lgWr~~f~i~~i~~  154 (553)
                      -.|+++|++.  ..+.+.++++|++|+++||++.++...+..+|.++++++..            ..|||++|++.++++
T Consensus       129 ~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~  208 (432)
T PRK10406        129 LARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLA  208 (432)
T ss_pred             HHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH
Confidence            3688999865  46788899999999999999999988888888777765422            248999999999888


Q ss_pred             HHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcch
Q psy15864        155 ILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFL  234 (553)
Q Consensus       155 li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (553)
                      ++.++++..+||+|++..        ..    ..                               . ...++.+++.+  
T Consensus       209 ll~~~~~~~~~e~~~~~~--------~~----~~-------------------------------~-~~~~~~l~~~~--  242 (432)
T PRK10406        209 VVALWLRRQLDETSQQET--------RA----LK-------------------------------E-AGSLKGLWRNR--  242 (432)
T ss_pred             HHHHHHHhcCCCCchHHH--------hh----hc-------------------------------c-cccHHHHHhhH--
Confidence            877766667898875310        00    00                               0 01122222221  


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAA  312 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i  312 (553)
                       +.++......+.....++.+..|+|.++.. .+++... .....+..++.+++.++.|+++||+|||+.++++.++.++
T Consensus       243 -~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~  321 (432)
T PRK10406        243 -RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAL  321 (432)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence             112222222222233455566778887754 5665433 3445555666778888899999999999876655444333


Q ss_pred             HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHH-HHHHHHHHhHH
Q psy15864        313 CFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYI-FAFAVNKLYYP  391 (553)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~-~~~i~~~~~~~  391 (553)
                      ..+.+.....     ...+....+....+..++.+... +..+++++|.+|++.|++++|+.+.++++ .+...|.+.+ 
T Consensus       322 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-  394 (432)
T PRK10406        322 FTVPILSALQ-----NVSSPYAAFGLVMCALLIVSFYT-SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-  394 (432)
T ss_pred             HHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-
Confidence            3222211110     01122222222222222222222 33457889999999999999999988765 3445666666 


Q ss_pred             HHhhccchhhHHHHHHHHHHHHhhheEEcccCCCCC
Q psy15864        392 MLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRT  427 (553)
Q Consensus       392 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  427 (553)
                      +++..+.+...++++++..++.++..++ .++++++
T Consensus       395 ~l~~~g~~~~~~~~~~~~~~i~~~~~~~-l~~~~~~  429 (432)
T PRK10406        395 SLKSIGMETAFFWYVTLMAVVAFLVSLM-LHRKGKG  429 (432)
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHHHHHHH-hhhcccc
Confidence            4455564544444443333333333233 3444443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.83  E-value=1.1e-19  Score=187.67  Aligned_cols=259  Identities=17%  Similarity=0.126  Sum_probs=154.5

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcc------------ccchHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFP  154 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~------------~lgWr~~f~i~~i~~  154 (553)
                      -+|+++|++.+  .+...++++|++|+++|++++++...+..+|.++++.++.            .+|||++|++.+++.
T Consensus       122 ~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~  201 (434)
T PRK15075        122 LGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV  201 (434)
T ss_pred             HHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH
Confidence            47999999876  4456789999999999999999988776666655544433            239999999865544


Q ss_pred             HHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcch
Q psy15864        155 ILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFL  234 (553)
Q Consensus       155 li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (553)
                      ++.+++....||++.+...+             ..                             ......++...+.   
T Consensus       202 ~~~~~~~~~~~e~~~~~~~~-------------~~-----------------------------~~~~~~~~~~~~~---  236 (434)
T PRK15075        202 PFIFLIRRSLEETEEFLARK-------------HR-----------------------------PSMREIFRSLAAN---  236 (434)
T ss_pred             HHHHHHHHhcCCCHHHHHhh-------------hc-----------------------------cccccHHHHHHHh---
Confidence            33333333355543210000             00                             0000011111111   


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAA  312 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i  312 (553)
                      ++.++..++..+.....++.+..|.|.+++. .|++... .+..++..++.+++++++|+++||+|||++++.+.++.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~  316 (434)
T PRK15075        237 WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAIL  316 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            1122222222333344566677888888865 5765433 3556677788899999999999999999887665443322


Q ss_pred             HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHH-HHHHHHHHhHH
Q psy15864        313 CFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYI-FAFAVNKLYYP  391 (553)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~-~~~i~~~~~~~  391 (553)
                      ..+.......     ...+.....+..++.+++.+... +..+.++.|.+|++.|+++.++.+.++.. ++.++|.+.+.
T Consensus       317 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~  390 (434)
T PRK15075        317 TAYPALSWLV-----AAPSFARMLAVELWLSFLYGSYN-GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW  390 (434)
T ss_pred             HHHHHHHHHH-----cCCchHHHHHHHHHHHHHHHHHH-hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence            2211111110     02222222232333344443332 33347789999999999999997666654 58889999999


Q ss_pred             HHhhccc
Q psy15864        392 MLDTFHL  398 (553)
Q Consensus       392 ~~~~~g~  398 (553)
                      +.+..++
T Consensus       391 i~~~~g~  397 (434)
T PRK15075        391 LIHVTGD  397 (434)
T ss_pred             HHHhcCC
Confidence            9888774

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.83  E-value=4.8e-20  Score=188.91  Aligned_cols=273  Identities=15%  Similarity=0.128  Sum_probs=176.7

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHH-Hh
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALC-AL  161 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i-~~  161 (553)
                      -.|+++|++.+  .+...+++.|++|+++|+++++++..+..+|.++++.++..+    +||+.|++.+++.++.++ ..
T Consensus       108 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (406)
T PRK11551        108 VARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLM  187 (406)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHH
Confidence            45788888754  446678999999999999999999999999999998877543    899999998877666544 44


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      +++||+|++...+...++..                                         ......++....... ...
T Consensus       188 ~~l~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~-~~~  225 (406)
T PRK11551        188 RWLPESRAFAQAAGAGKQRA-----------------------------------------PVLRALFGEGRATAT-LLL  225 (406)
T ss_pred             HhCCCChhHHhccCcchhhh-----------------------------------------hhHHHHhhhhhhhHH-HHH
Confidence            55899875421111000000                                         000001111000111 111


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVY  320 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  320 (553)
                      .+..+......+....|.|.++...|.+.. .........++.+++.++.|+++||+|||+.+.++++..+++.+++.. 
T Consensus       226 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-  304 (406)
T PRK11551        226 WISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA-  304 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-
Confidence            111222223344555677888777776543 346666778899999999999999999998877755555554443332 


Q ss_pred             HHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchh
Q psy15864        321 AQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWG  400 (553)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~  400 (553)
                              ..+.+.+++..++.+++.+.. .+..++++.|.+|++.|+++.|+.+.+..+++.++|.+.+.+.+..+.+.
T Consensus       305 --------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~  375 (406)
T PRK11551        305 --------APSFAGMLLAGFAAGLFVVGG-QSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTV  375 (406)
T ss_pred             --------cCcHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchH
Confidence                    333444444455555544333 34445788999999999999999999999999999999999988765554


Q ss_pred             hHHHHHHHHHHHH
Q psy15864        401 TLYFYAAISVVGT  413 (553)
Q Consensus       401 ~~~~~~~~~~~~~  413 (553)
                      .++...+.+.+++
T Consensus       376 ~~~~~~~~~~~~~  388 (406)
T PRK11551        376 GVIGASIPVILVA  388 (406)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444443333333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2.2e-19  Score=175.20  Aligned_cols=267  Identities=20%  Similarity=0.169  Sum_probs=177.2

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHh-c
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCAL-Y  162 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~-~  162 (553)
                      +|++.|++.+  .++..++.+++.|+++|+++++++..+..++.++|..++.++    |||+.|++.+++++++++.. .
T Consensus       107 aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~  186 (394)
T COG2814         107 ARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWK  186 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6888888655  567778999999999999999999999998888877766665    99999999999999886555 4


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      .+|  |+-..  ++.                                         ..........++++.....++.++
T Consensus       187 ~lP--~~~~~--~~~-----------------------------------------~~~~~~~~~~l~~p~v~~~l~~t~  221 (394)
T COG2814         187 LLP--PSEIS--GSL-----------------------------------------PGPLRTLLRLLRRPGVLLGLLATF  221 (394)
T ss_pred             hCC--CccCC--CCC-----------------------------------------CcchhHHHHHhcCchHHHHHHHHH
Confidence            488  21100  000                                         000001112233333333333333


Q ss_pred             HHHHHhhhhhHHHHhhH-HHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYA-VGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVY  320 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  320 (553)
                          ..+.+.+....|. |.+.+..|++. ...+..+.++++.++|++++|+++|| +.|+.+.....++++..+.+.+.
T Consensus       222 ----l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~  296 (394)
T COG2814         222 ----LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT  296 (394)
T ss_pred             ----HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh
Confidence                3333333444444 44444567654 44588889999999999999999999 88888877777777666665553


Q ss_pred             HHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchh
Q psy15864        321 AQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWG  400 (553)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~  400 (553)
                              ..+.+..++..++.++.......... +..++ .-++.+..+.+++....+++..++..++|.++++.++..
T Consensus       297 --------~~~~~~~~~~~~~wg~a~~~~~~~~~-~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~  366 (394)
T COG2814         297 --------GASPALALALLFLWGFAFSPALQGLQ-TRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAA  366 (394)
T ss_pred             --------cchHHHHHHHHHHHHHHhhhhhhHHH-HHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence                    33444444444444443333322222 34444 225778999999999999999999999999999988766


Q ss_pred             hHHHHHHHHHHHHhhh
Q psy15864        401 TLYFYAAISVVGTLYM  416 (553)
Q Consensus       401 ~~~~~~~~~~~~~~~~  416 (553)
                      ..++.+++.++..++.
T Consensus       367 ~~~~~a~l~~~a~~~~  382 (394)
T COG2814         367 TGWVGAALLLLALLLA  382 (394)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666555555554444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.82  E-value=1.8e-19  Score=185.33  Aligned_cols=287  Identities=14%  Similarity=0.071  Sum_probs=191.5

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhcc
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYF  163 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~  163 (553)
                      .|++.|++.+  .+...+++.+++|+++|+++.++..++..+|.++|+.+++.+    +||+.|++.++..++.+++.++
T Consensus       116 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (417)
T PRK10489        116 LGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR  195 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            4566666543  234557789999999999999999999999999999887765    8999999988887777766667


Q ss_pred             ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHH
Q psy15864        164 IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSL  243 (553)
Q Consensus       164 lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (553)
                      +|++++....+.+                  .    ..+..                  ..++..++++..+..++..++
T Consensus       196 l~~~~~~~~~~~~------------------~----~~~~~------------------~~~~~~~~~~~~~~~~~~~~~  235 (417)
T PRK10489        196 LPALPPPPQPREH------------------P----LRSLL------------------AGFRFLLASPVVGGIALLGGL  235 (417)
T ss_pred             CCCCCCCCccccc------------------c----hHHHH------------------HHHHHHHcChHHHHHHHHHHH
Confidence            7776432100000                  0    00000                  011112222222222222111


Q ss_pred             HHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHH
Q psy15864        244 FFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYA  321 (553)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~  321 (553)
                      .    .. ......+.|.+... .+.+.. ..+.....+++.+++.++.+++.||.++++.+..+.++.+++.+++..  
T Consensus       236 ~----~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~--  308 (417)
T PRK10489        236 L----TM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL--  308 (417)
T ss_pred             H----HH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc--
Confidence            1    11 22334556666665 565543 346666778899999999999999977777777666666655554443  


Q ss_pred             HhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhh
Q psy15864        322 QFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGT  401 (553)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~  401 (553)
                             ..+.+..+++.++.+++.+.. .+...+++.+.+|++.||++.|+.+....+++.+++.+.|.+.+..+....
T Consensus       309 -------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~  380 (417)
T PRK10489        309 -------MPMWILAVLCLALFGYLSAIS-SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVAS  380 (417)
T ss_pred             -------cchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhH
Confidence                   333444455555556554433 233457888999999999999999999999999999999999998887777


Q ss_pred             HHHHHHHHHHHHhhheEEcccCCCCChHHH
Q psy15864        402 LYFYAAISVVGTLYMYFVMPETEGRTLRDI  431 (553)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~pet~~~~~~~~  431 (553)
                      +.+.+++..++.++.+..+|++++++.+|.
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (417)
T PRK10489        381 ASASGFGLLIIGVLLLLVLGELRRFRQTPP  410 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccc
Confidence            777777777777777778898887776554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.82  E-value=1.5e-19  Score=188.47  Aligned_cols=295  Identities=12%  Similarity=0.013  Sum_probs=175.3

Q ss_pred             cccccccccccc--cchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHH
Q psy15864         87 EEKGTFLYKMAA--PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-------HWRSAAILNLLFPILA  157 (553)
Q Consensus        87 ~~~gr~~~G~ga--~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-------gWr~~f~i~~i~~li~  157 (553)
                      ---.|+++|++.  ..+...++++|++|+++||++++++.++..+|.+++++++.++       +||..|.+.++++++.
T Consensus       125 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~  204 (467)
T PRK09556        125 MIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALII  204 (467)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHH
Confidence            334677777753  3567778999999999999999999999999999988775422       5999999888887766


Q ss_pred             HHHh-ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhH
Q psy15864        158 LCAL-YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLP  236 (553)
Q Consensus       158 ~i~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (553)
                      .++. ++++++|...... +.++   .   .......+               .. .  .. .........+.+...+.+
T Consensus       205 ~i~~~~~~~~~p~~~~~~-~~~~---~---~~~~~~~~---------------~~-~--~~-~~~~~~~~~~~~~~l~~~  258 (467)
T PRK09556        205 GFIGLRYGSDSPEELGWG-KAEE---I---FGEPISEE---------------DK-E--TE-STDMTKWQIFVEYVLKNP  258 (467)
T ss_pred             HHHHHHhCCCChhhcCCC-Chhh---c---ccCccchh---------------hh-c--cc-cccCcHHHHHHHHHHcCh
Confidence            4444 3456665321000 0000   0   00000000               00 0  00 000000011111112223


Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHH
Q psy15864        237 YAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACF  314 (553)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~  314 (553)
                      .++...+..++.......+..|+|.++.+ .|++.. ..+..++..++.++|.+++|+++||+|||+.+++...+.+++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~  338 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF  338 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            33444444444444555677888887754 666543 3466667788899999999999999999987655443333322


Q ss_pred             HHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHH-HHHHHHHHhHHHH
Q psy15864        315 IVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYI-FAFAVNKLYYPML  393 (553)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~-~~~i~~~~~~~~~  393 (553)
                      .++.+ ..      ..+.+..++..++.+++........ ..++.|.+|++.||++.|+.+.++++ +++++|.+.|.+.
T Consensus       339 ~~~~~-~~------~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~  410 (467)
T PRK09556        339 TLGVY-QH------ATSEYMYLASLFALGFLVFGPQLLI-GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIA  410 (467)
T ss_pred             HHHHH-Hh------cCcHHHHHHHHHHHHHHHhhHHHHH-HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHh
Confidence            22221 10      2233344444555554322222222 25667999999999999999999997 6699999999999


Q ss_pred             h------------hccchhhHHHHHHHHHHHHhh
Q psy15864        394 D------------TFHLWGTLYFYAAISVVGTLY  415 (553)
Q Consensus       394 ~------------~~g~~~~~~~~~~~~~~~~~~  415 (553)
                      +            ..+|...+.++.++.++.+++
T Consensus       411 ~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~  444 (467)
T PRK09556        411 DPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICL  444 (467)
T ss_pred             cccccccccccccccChHHHHHHHHHHHHHHHHH
Confidence            8            456555565554444444433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.82  E-value=3.7e-19  Score=183.62  Aligned_cols=292  Identities=14%  Similarity=0.057  Sum_probs=173.8

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhc
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALY  162 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~  162 (553)
                      -.|++.|++.+  .+....++.|++|+++|+++++++..+..+|.++++.+...+    +||++|++.+++.++.+++..
T Consensus       111 ~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~  190 (426)
T PRK12307        111 LSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRA  190 (426)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            35888888654  556778999999999999999999999999999988776543    999999986655444444444


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      ..||++++...+.            ....+.....  .                  ......++.+++++..+..++...
T Consensus       191 ~~p~~~~~~~~~~------------~~~~~~~~~~--~------------------~~~~~~~~~~~~~~~~~~~~~~~~  238 (426)
T PRK12307        191 RAPESKEWEEAKL------------SGKGKHSQSA--W------------------SVFSLSMKGLFNRAQFPLTLCVFI  238 (426)
T ss_pred             HCCCChHHHHhhh------------hccccccccc--h------------------hhhhHHHHHHHhhchHHHHHHHHH
Confidence            4677654311000            0000000000  0                  000012223333333322222222


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYA  321 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~  321 (553)
                       ..+..+.....+..++|.++...+.+... .....+..++.+++.++.|+++||+|||+.+..+.++.+++.+++... 
T Consensus       239 -~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-  316 (426)
T PRK12307        239 -VLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-  316 (426)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-
Confidence             22222333334556677777766665332 345566778899999999999999999988777766655544433321 


Q ss_pred             HhhcccCCCCChhHHHHHHHHHHHH-hhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchh
Q psy15864        322 QFHLSYGWDSPLVPTVFLVLAAFLT-HICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWG  400 (553)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~  400 (553)
                             ...... .+..++++.+. ..+..++...++.|.+|++.||+++|+...+..+++.++|.+.+.+.+..+...
T Consensus       317 -------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~  388 (426)
T PRK12307        317 -------PQDNYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA  388 (426)
T ss_pred             -------ccccHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence                   111222 22222222221 122223334677899999999999999999999999999999999988877443


Q ss_pred             h-HHHHHHHHHHHHhhheEEccc
Q psy15864        401 T-LYFYAAISVVGTLYMYFVMPE  422 (553)
Q Consensus       401 ~-~~~~~~~~~~~~~~~~~~~pe  422 (553)
                      . +++.++.+.+..++..++.|+
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~  411 (426)
T PRK12307        389 ALTFIVAFWTATILLIIGLSIPD  411 (426)
T ss_pred             HHHHHHHHHHHHHHhhccccCCh
Confidence            3 222333333333333344554

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.82  E-value=1.7e-19  Score=186.18  Aligned_cols=299  Identities=12%  Similarity=0.089  Sum_probs=174.0

Q ss_pred             cccccccc--cchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHH-HHhcc
Q psy15864         91 TFLYKMAA--PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILAL-CALYF  163 (553)
Q Consensus        91 r~~~G~ga--~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~-i~~~~  163 (553)
                      |++.|++.  ..+...+++.+++|+++|+++++++..+..+|.++++++++.+    +||+.|++.++++++.. +..++
T Consensus       118 ~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~  197 (434)
T PRK11663        118 WVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWR  197 (434)
T ss_pred             HHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555433  3456778999999999999999999999999999988776654    99999999888776554 44455


Q ss_pred             ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhh-hcchhHHHHHHH
Q psy15864        164 IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMR-RTFLLPYAIVTS  242 (553)
Q Consensus       164 lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  242 (553)
                      ++|+|.+.......+...+.             ..    .   . ...      . .....++..+. ...+.+.++...
T Consensus       198 ~~~~p~~~~~~~~~~~~~~~-------------~~----~---~-~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~  249 (434)
T PRK11663        198 LRDKPQAMGLPSVGEWRHDA-------------LE----L---A-QQQ------E-GAGLSRKEILTKYVLLNPYIWLLS  249 (434)
T ss_pred             cCCCHhhcCCCCcccccccc-------------cc----c---c-hhc------c-ccCCChhhhHHHHHhcChHHHHHH
Confidence            78877532100000000000             00    0   0 000      0 00001111111 111112223333


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHH-hhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccC--Cccee-ecchhHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFE-SIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTG--KRPLA-LISTGGSAACFIVV  317 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~G--rr~~l-~~~~~~~~i~~~~~  317 (553)
                      +..+........+..|+|.++. ..|++... ....+++.++.++|.+++|+++||+.  +|... ....+..+++.+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~  329 (434)
T PRK11663        250 FSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSL  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence            3333334445556677888874 45665433 46666788899999999999999983  33332 22111212121111


Q ss_pred             HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        318 AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      ....       ..+.....+..+..+++. .+.......+++|.+|++.||+++|+.+.+.+++++++|.+++++.+..+
T Consensus       330 ~~~~-------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g  401 (434)
T PRK11663        330 WLMP-------FASYVMQAACFFTIGFFV-FGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH  401 (434)
T ss_pred             HHcc-------cccHHHHHHHHHHHHHHH-hhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc
Confidence            1111       112222222222222221 11112223566899999999999999999999999999999999999888


Q ss_pred             chhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        398 LWGTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      +...+.+.+++.++.+++.+++.+++++
T Consensus       402 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~  429 (434)
T PRK11663        402 WTGFFVVISIAAGISALLLLPFLNAQAP  429 (434)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence            7777777777766666655555554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.80  E-value=7.8e-19  Score=179.78  Aligned_cols=279  Identities=13%  Similarity=0.104  Sum_probs=167.0

Q ss_pred             cccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhccc----------cchHHHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----------LHWRSAAILNLLFPIL  156 (553)
Q Consensus        89 ~gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~----------lgWr~~f~i~~i~~li  156 (553)
                      -.|+++|++.+.  +...+++.|++|+++|+++++++..+..+|.++++++++.          .|||++|++.++++++
T Consensus       101 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~  180 (412)
T TIGR02332       101 LLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVI  180 (412)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHH
Confidence            468888887653  5566789999999999999999999999999888877643          3899999999888876


Q ss_pred             HH-HHhccccCCce---eeeecCChHHHHHHHHHHcCCCCC-cchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhh
Q psy15864        157 AL-CALYFIPESPH---WLISQGRMQEASASLCWLRGWVTP-DKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRR  231 (553)
Q Consensus       157 ~~-i~~~~lpEsp~---~l~~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (553)
                      .. +.++++||+|+   |+..    ++.....+.++..... +.....   .           ..........++.++  
T Consensus       181 ~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~--  240 (412)
T TIGR02332       181 LGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDNDQLTLEQPEGA---F-----------AHAAMPQRSMLREIF--  240 (412)
T ss_pred             HHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHhccccccccccc---c-----------ccccccHHHHHHHhc--
Confidence            64 44556899884   2211    1111111111000000 000000   0           000000001122222  


Q ss_pred             cchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhh--CCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCccee-ecch
Q psy15864        232 TFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESI--HAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLA-LIST  307 (553)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l-~~~~  307 (553)
                         .+.++...+.+++....++.+..|+|.+++..  +++. .......+..++.++|.+++|+++||++||+.. ....
T Consensus       241 ---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~  317 (412)
T TIGR02332       241 ---TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPY  317 (412)
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHH
Confidence               12233444445555556777788999999764  3332 234566778889999999999999999987643 3333


Q ss_pred             hHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHH
Q psy15864        308 GGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNK  387 (553)
Q Consensus       308 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~  387 (553)
                      ++.++++ ++...        .......++..++.+++. ....++.++...|.+|++.|++++|+.+.+++++++++|.
T Consensus       318 ~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~  387 (412)
T TIGR02332       318 LFAAAGW-LLASA--------TDHNLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPF  387 (412)
T ss_pred             HHHHHHH-HHHHh--------cCCHHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhh
Confidence            3333322 11110        112122222222222211 1112333356678899999999999999999999999999


Q ss_pred             HhHHHHhhccchh
Q psy15864        388 LYYPMLDTFHLWG  400 (553)
Q Consensus       388 ~~~~~~~~~g~~~  400 (553)
                      +.+.+.+..+.|.
T Consensus       388 ~~g~i~~~~g~~~  400 (412)
T TIGR02332       388 LIGILKDATGSFN  400 (412)
T ss_pred             hcccccccCCCCc
Confidence            9999988776333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG0569|consensus

Probab=99.80  E-value=6.5e-20  Score=184.39  Aligned_cols=166  Identities=17%  Similarity=0.174  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccc
Q psy15864        274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLL  353 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      ...+++.+|+++|++++++++|++|||..++++.++..++.+++.+...      .....++++++++.|...+.....+
T Consensus        64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~------~~~~e~li~GR~i~Gl~~gl~~~~~  137 (485)
T KOG0569|consen   64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS------APSFEMLILGRLIVGLACGLSTGLV  137 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHhHHHHHHH
Confidence            4455678999999999999999999999999988888888877776554      6678889999999999999998888


Q ss_pred             cceeeccccccchhhhhhhHHHHHHHHHHHHHHHH-hHHHHhhccchhhHHHHHHHHHHHHhhheEEcccC-------CC
Q psy15864        354 PWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKL-YYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPET-------EG  425 (553)
Q Consensus       354 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet-------~~  425 (553)
                      + +|+.|+.|.+.||....+......+|..++..+ ...+.+....|..+..+.++..++.++.+.++|||       ++
T Consensus       138 p-myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~  216 (485)
T KOG0569|consen  138 P-MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKG  216 (485)
T ss_pred             H-HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcC
Confidence            7 999999999999998877777777776666333 34455555556666677777777788888999998       56


Q ss_pred             CChHHHHHHHhccCCcchhhH
Q psy15864        426 RTLRDIEEHFADKGKTFVTNI  446 (553)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~  446 (553)
                      +..++.+++...++..++...
T Consensus       217 ~~~~A~~sl~~y~G~~~~~~~  237 (485)
T KOG0569|consen  217 DEEEARKALKFYRGKEDVEAE  237 (485)
T ss_pred             CHHHHHHHHHHHhCCCcchhH
Confidence            666777788877776643333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.80  E-value=1.3e-18  Score=177.99  Aligned_cols=278  Identities=15%  Similarity=0.080  Sum_probs=168.9

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----c--hHHHHHHHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----H--WRSAAILNLLFPILALCA  160 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----g--Wr~~f~i~~i~~li~~i~  160 (553)
                      -.|++.|++.+  .+...+++.|++|+++|+++.++..++..+|.++++.++..+    +  ||+.|++.+++.++.++.
T Consensus       105 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~  184 (405)
T TIGR00891       105 IARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWL  184 (405)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence            46788888654  456778999999999999999999999999999988877654    4  999999987777776666


Q ss_pred             hccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhh-hcchhHHHH
Q psy15864        161 LYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMR-RTFLLPYAI  239 (553)
Q Consensus       161 ~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  239 (553)
                      ...+||++++...+.+.+.......+....  .+.......                     ........ ....+..+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~  241 (405)
T TIGR00891       185 RKNIPEAEDWKEKHAGKALVRTMVDILYGG--EHRIANIVM---------------------TLAAAMVQSAGKRWPTFV  241 (405)
T ss_pred             HHhCCCChhHHHHhhhhhhhhhHHHHHhcc--chhhhhhhh---------------------hhhHHhhhhhhhhhHHHH
Confidence            667899875432111111111111111000  000000000                     00000000 001111111


Q ss_pred             HHHHHHHHhhhhhHHHHhhHHHHHH-hhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHH
Q psy15864        240 VTSLFFIGQFGGMTTLQTYAVGIFE-SIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVV  317 (553)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  317 (553)
                      ...+..............++|.++. ..+.+.. ..+......++.+++.++.|+++||+|||+.+.++.++..+..+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  321 (405)
T TIGR00891       242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPV  321 (405)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence            1111111112222233345555553 3565533 3456667888999999999999999999998877665543322222


Q ss_pred             HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        318 AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      ...        ..+.+.+.+..++.+++.+... ++...+++|.+|++.|++++|+.+.+..+++.++|.+.+.+.+..|
T Consensus       322 ~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       322 FAI--------GANVAVLGLGLFFQQMLVQGIW-GILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHh--------CCchHHHHHHHHHHHHHHccch-hhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            111        2333444444444454443333 3334788999999999999999999999999999999999999887


Q ss_pred             c
Q psy15864        398 L  398 (553)
Q Consensus       398 ~  398 (553)
                      .
T Consensus       393 ~  393 (405)
T TIGR00891       393 E  393 (405)
T ss_pred             c
Confidence            3

>PRK03545 putative arabinose transporter; Provisional

Probab=99.79  E-value=2.9e-18  Score=174.68  Aligned_cols=269  Identities=16%  Similarity=0.122  Sum_probs=170.8

Q ss_pred             ccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHh-c
Q psy15864         90 GTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCAL-Y  162 (553)
Q Consensus        90 gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~-~  162 (553)
                      .|+++|++.+.  +...+++.+++|+++|+++++++..+..+|.+++++++..+    |||++|++.++++++..++. .
T Consensus       103 ~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        103 SRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            57788877653  46678999999999999999999999999999998887654    99999999998887765443 3


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      ++|+.|+.    .+ ..                    .                      ...+..++++..+......+
T Consensus       183 ~~~~~~~~----~~-~~--------------------~----------------------~~~~~~~~~~~~~~~~~~~~  215 (390)
T PRK03545        183 LLPLLPSE----HS-GS--------------------L----------------------KSLPLLFRRPALVSLYLLTV  215 (390)
T ss_pred             hCCCCCCC----Cc-ch--------------------H----------------------HHHHHHHhCcHHHHHHHHHH
Confidence            46765421    00 00                    0                      00111222222222222211


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVY  320 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  320 (553)
                      +..    ........+.+.++.+ .+.+.. ..+...+.+++.+++.++.|+++||+|||.+ ..+..+..++..++...
T Consensus       216 ~~~----~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~  290 (390)
T PRK03545        216 VVV----TAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPA  290 (390)
T ss_pred             HHH----HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHH
Confidence            111    1122223344444443 465544 3456667788999999999999999998764 33333333333222221


Q ss_pred             HHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchh
Q psy15864        321 AQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWG  400 (553)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~  400 (553)
                              ..+.+.+++..++.+++.+.. .+....++.+..| +.|++++|+.+.+.+++..+++.+.|.+.+..++..
T Consensus       291 --------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~  360 (390)
T PRK03545        291 --------ANSEWHLSVLSIFWGIAIMCI-GLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSS  360 (390)
T ss_pred             --------hchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhH
Confidence                    233444555555555554322 2223366677766 578999999999999999999999999999998877


Q ss_pred             hHHHHHHHHHHHHhhheEEc
Q psy15864        401 TLYFYAAISVVGTLYMYFVM  420 (553)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~  420 (553)
                      .+.+.+++.++.+++.+..+
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        361 IGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            77777666666665554433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.78  E-value=2.5e-18  Score=175.17  Aligned_cols=267  Identities=15%  Similarity=0.168  Sum_probs=169.3

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcc------------ccchHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFP  154 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~------------~lgWr~~f~i~~i~~  154 (553)
                      -.|+++|++.+  .+...+++.|++|+++|+++.++...+..+|.+++++++.            ..+||++|++.+++.
T Consensus       101 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  180 (394)
T TIGR00883       101 LARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLV  180 (394)
T ss_pred             HHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHH
Confidence            35888888754  4567889999999999999999999999999998887642            238999999988877


Q ss_pred             HHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcch
Q psy15864        155 ILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFL  234 (553)
Q Consensus       155 li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (553)
                      ++++++...+||+|++...+++                                        . ...........+++. 
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~-~~~~~~~~~~~~~~~-  218 (394)
T TIGR00883       181 LIGLYLRRNLEETPVFEKAQEK----------------------------------------H-KKKRGPIRETLTKHR-  218 (394)
T ss_pred             HHHHHHHHhcCCChhHHHHHhc----------------------------------------c-ccccCCHHHHHHhch-
Confidence            7766666667877642100000                                        0 000011122222211 


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHH-HhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIF-ESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAA  312 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i  312 (553)
                      ++. +...+..+...........+.|.++ ...+.+.. ......+..++.+++.+++|+++||+|||+.+..+..+..+
T Consensus       219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~  297 (394)
T TIGR00883       219 KPF-LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAAL  297 (394)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            112 2222223333334455566777776 34555443 33556677788899999999999999999877654444333


Q ss_pred             HH-HHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHH-HHHHHHHHHHHhH
Q psy15864        313 CF-IVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSS-SYIFAFAVNKLYY  390 (553)
Q Consensus       313 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~-~~~~~~i~~~~~~  390 (553)
                      .. .++.....      ..+.+..++..++.+++.+....+. .++++|.+|++.|+++.++...+ ..+++.++|.+.+
T Consensus       298 ~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g  370 (394)
T TIGR00883       298 LAVPLLMALLD------SGSFTLFFFLVLGLALIGGMYTGPM-GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA  370 (394)
T ss_pred             HHHHHHHHHhc------CCchHHHHHHHHHHHHHHHHHhhhH-HHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence            32 22211110      2344444555555666555555444 58899999999999999985444 5577889999999


Q ss_pred             HHHhhccchhhHHHH
Q psy15864        391 PMLDTFHLWGTLYFY  405 (553)
Q Consensus       391 ~~~~~~g~~~~~~~~  405 (553)
                      .+.+..+.+....++
T Consensus       371 ~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       371 ALVAMTGDWYAIGYY  385 (394)
T ss_pred             HHHHHcCcchhHHHH
Confidence            999887743333333

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.78  E-value=4.6e-18  Score=176.47  Aligned_cols=293  Identities=16%  Similarity=0.104  Sum_probs=164.6

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHH-HHHhhccc----cchHHHHHHHHHHHHHH-HHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTV-SQLFLGSF----LHWRSAAILNLLFPILA-LCA  160 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~-l~~~l~~~----lgWr~~f~i~~i~~li~-~i~  160 (553)
                      -.|++.|++.+  .+....++.+++|+++|+++++++.++..+|.. ++++++..    .+||+.|++.++++++. ++.
T Consensus       125 ~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~  204 (452)
T PRK11273        125 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFA  204 (452)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            34667776544  334557789999999999999999999888864 45543221    29999999988887775 444


Q ss_pred             hccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhh-hhhcchhHHHH
Q psy15864        161 LYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMY-MRRTFLLPYAI  239 (553)
Q Consensus       161 ~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  239 (553)
                      .+++||+|+....+. .++...   ..      ..              ..   ...... ....... .......+.++
T Consensus       205 ~~~~~~~~~~~~~~~-~~~~~~---~~------~~--------------~~---~~~~~~-~~~~~~~~~~~~~~~~~~~  256 (452)
T PRK11273        205 FAMMRDTPQSCGLPP-IEEYKN---DY------PD--------------DY---NEKHEQ-ELTAKQIFMQYVLPNKLLW  256 (452)
T ss_pred             HHHccCCHhhcCCCC-hhhhhh---cc------cc--------------cc---ccccCC-CccHHHHHHHHHHcChHHH
Confidence            556788875311000 000000   00      00              00   000000 0001111 11111122233


Q ss_pred             HHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhccc--CCcceeec-chhHHHHHH
Q psy15864        240 VTSLFFIGQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYT--GKRPLALI-STGGSAACF  314 (553)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~--Grr~~l~~-~~~~~~i~~  314 (553)
                      ...+..+......+.+..|+|.++++ .+++. ...+...+..++.+++.+++|+++||+  +||....+ .+.+..++.
T Consensus       257 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~  336 (452)
T PRK11273        257 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT  336 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence            33333333333445566788888865 46553 334556677788899999999999999  44443221 112222222


Q ss_pred             HHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHH-HHHHhHHHH
Q psy15864        315 IVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFA-VNKLYYPML  393 (553)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i-~~~~~~~~~  393 (553)
                      +++.+..       ..+.+..++..++.+.+..... ....+++.|.+|++.||+++|+.+.+..+++.+ +|.+.+.+.
T Consensus       337 ~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~  408 (452)
T PRK11273        337 IVYWLNP-------AGNPTVDMACMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  408 (452)
T ss_pred             HHHHHhc-------ccChHHHHHHHHHHHHHHHhHH-HHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            2211100       1222333333333333221111 122256679999999999999999988888765 688999999


Q ss_pred             hhccchhhHHHHHHHHHHHHhhhe
Q psy15864        394 DTFHLWGTLYFYAAISVVGTLYMY  417 (553)
Q Consensus       394 ~~~g~~~~~~~~~~~~~~~~~~~~  417 (553)
                      +..++...+.+.++++++.+++.+
T Consensus       409 ~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        409 DFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHH
Confidence            988877777766666555554443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.78  E-value=3.8e-18  Score=174.45  Aligned_cols=269  Identities=18%  Similarity=0.139  Sum_probs=173.0

Q ss_pred             cccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhc
Q psy15864         89 KGTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALY  162 (553)
Q Consensus        89 ~gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~  162 (553)
                      -.|+++|++.+.  +...+++.|++|+++|++++++...+..+|.++++.++..+    |||+.+++.++++++.+++..
T Consensus       117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  196 (399)
T PRK05122        117 LGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLAR  196 (399)
T ss_pred             HHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence            367888887653  45567789999999999999999888888888877776654    999999887777665554444


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      ..|+++.-   +.+.                                             ..+....++....  .....
T Consensus       197 ~~~~~~~~---~~~~---------------------------------------------~~~~~~~~~~~~~--~~~~~  226 (399)
T PRK05122        197 PRPAVPPV---KGER---------------------------------------------LPFRRVLGRVWPY--GMGLA  226 (399)
T ss_pred             cCCCCCCC---Cccc---------------------------------------------hhHHHHHHHHHHH--HHHHH
Confidence            34443210   0000                                             0000000000000  01111


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQ  322 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  322 (553)
                      +    ..........+.+.++.+.+.. ...+......++.+++.++.|++.||+|+|+.+.++.++.+++.+++..   
T Consensus       227 ~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---  298 (399)
T PRK05122        227 L----ASIGFGTIATFITLYYAARGWD-GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL---  298 (399)
T ss_pred             H----HHHHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---
Confidence            1    1112223334555555554542 3344556677888899999999999999999887777766666655544   


Q ss_pred             hhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhH
Q psy15864        323 FHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTL  402 (553)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~  402 (553)
                            .++.+..++..++.+++.+...... ...+.+.+|++.||++.|+.+....+++.+++.+.+.+.+..++...+
T Consensus       299 ------~~~~~~~~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  371 (399)
T PRK05122        299 ------APSPWMALIGAALTGFGFSLVFPAL-GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIF  371 (399)
T ss_pred             ------hccHHHHHHHHHHHHHhHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence                  3344555556666676665544333 356678899999999999999999999999999999998888876666


Q ss_pred             HHHHHHHHHHHhhheEEcccC
Q psy15864        403 YFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~pet  423 (553)
                      .+.+++.++..++.+ ++++.
T Consensus       372 ~~~~~~~~~~~~~~~-~~~~~  391 (399)
T PRK05122        372 LAAALAALLGLALTW-LLYRR  391 (399)
T ss_pred             HHHHHHHHHHHHHHH-Hhccc
Confidence            666665555554443 34443

>PRK12382 putative transporter; Provisional

Probab=99.78  E-value=9.6e-18  Score=171.02  Aligned_cols=266  Identities=17%  Similarity=0.105  Sum_probs=174.1

Q ss_pred             cccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhc
Q psy15864         89 KGTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALY  162 (553)
Q Consensus        89 ~gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~  162 (553)
                      -+|+++|++.+.  +...+++.|++|+++|++++++++.+..+|.++++.++..+    |||+.+++..++.++.++...
T Consensus       117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  196 (392)
T PRK12382        117 VGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNG  196 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence            468889988763  34557889999999999999999998888888888877654    999988876665554444333


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      ..||.+..   +++                ...    ..                     ...+.+.     ...+ ..+
T Consensus       197 ~~~~~~~~---~~~----------------~~~----~~---------------------~~~~~~~-----~~~~-~~~  226 (392)
T PRK12382        197 TVRKVPAH---AGE----------------RPS----LW---------------------SVVGLIW-----KPGL-GLA  226 (392)
T ss_pred             hccCCCCC---ccc----------------Cch----HH---------------------HHHHHHH-----HhHH-HHH
Confidence            34543210   000                000    00                     0000000     0001 111


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQ  322 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  322 (553)
                      +    ..........+.+.++.+.+.+ .........+++.+++.++.|++.||+|+|+.+.++..+.+++.+++..   
T Consensus       227 l----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---  298 (392)
T PRK12382        227 L----QGVGFAVIGTFVSLYFASKGWA-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL---  298 (392)
T ss_pred             H----HHHHHhHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH---
Confidence            1    1112223344555555555543 2334455567778889999999999999999988887777777665544   


Q ss_pred             hhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhH
Q psy15864        323 FHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTL  402 (553)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~  402 (553)
                            ..+.+..++..++.+++.+...... .+.+.+.+|++.||++.|+.+....+++.++|.+.+.+.+..++...+
T Consensus       299 ------~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~  371 (392)
T PRK12382        299 ------APTAWVALAGAALTGAGCSLIFPAL-GVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVF  371 (392)
T ss_pred             ------cccHHHHHHHHHHHHHHHHhHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence                  3344555555666666555444333 367788899999999999999999999999999999999988877777


Q ss_pred             HHHHHHHHHHHhhheEE
Q psy15864        403 YFYAAISVVGTLYMYFV  419 (553)
Q Consensus       403 ~~~~~~~~~~~~~~~~~  419 (553)
                      .+.+++.++..++.+++
T Consensus       372 ~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        372 LAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            77766666655555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.78  E-value=4.4e-18  Score=173.29  Aligned_cols=297  Identities=16%  Similarity=0.127  Sum_probs=174.6

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhc
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALY  162 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~  162 (553)
                      -.|+++|++.+  .+...+++.|++|+++|++++++...+..+|.++++.+++.+    +||+.|++.++++++..++.+
T Consensus        87 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  166 (399)
T TIGR00893        87 ILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh
Confidence            35777777654  456678999999999999999999999999999998887764    999999999888877655444


Q ss_pred             -cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        163 -FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       163 -~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                       ++||+|+.... ...++..........                    .. ................++.+    .++..
T Consensus       167 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------~~-~~~~~~~~~~~~~~~~~~~~----~~~~~  220 (399)
T TIGR00893       167 KFIPDPPQKAKW-LTEEEKYIVVGGLLA--------------------EQ-QGKGPSTPKKYQIKELLKDR----RVWGL  220 (399)
T ss_pred             heecCCCCcccc-CCHHHHhhcchhhcc--------------------cc-ccccccCCCccchHHHhcCH----HHHHH
Confidence             46666532100 000000000000000                    00 00000001111122222222    22233


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecch-hHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALIST-GGSAACFIVVA  318 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~-~~~~i~~~~~~  318 (553)
                      .+..+........+..+.|.++.+ .+.+. +..+...+..++.+++.+++|+++||++||+..+... ....++.++..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (399)
T TIGR00893       221 ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLS  300 (399)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence            333344444455566677776643 45543 3346666778889999999999999999996322221 12222211111


Q ss_pred             HHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc-
Q psy15864        319 VYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH-  397 (553)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-  397 (553)
                      .......   ........+...+.+++. .+..+..+++++|.+|++.|+++.|+.+.+..+++.++|.+.+.+.+..+ 
T Consensus       301 ~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~  376 (399)
T TIGR00893       301 LLMFATN---YVNIPYAALALVALGFFG-LGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS  376 (399)
T ss_pred             HHHHHhc---cchhHHHHHHHHHHHHhc-hhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCc
Confidence            1111000   111222222222333322 22456667899999999999999999999999999999999999998877 


Q ss_pred             chhhHHHHHHHHHHHHhh
Q psy15864        398 LWGTLYFYAAISVVGTLY  415 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~  415 (553)
                      +...+.+.+++.++..++
T Consensus       377 ~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       377 FAGALMVVAALALIGALS  394 (399)
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            555555555555544443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.77  E-value=5e-18  Score=175.52  Aligned_cols=304  Identities=16%  Similarity=0.106  Sum_probs=175.1

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhccc-----cchHHHHHHHHHHHHHHH-HH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILAL-CA  160 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~-----lgWr~~f~i~~i~~li~~-i~  160 (553)
                      -.|++.|++.+  .+....++.|++|+++||+++++++++..+|..+++.+...     .+||+.|++.+++++++. +.
T Consensus       123 ~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~  202 (438)
T TIGR00712       123 VLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFA  202 (438)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            34666666543  34566788999999999999999999999988887755432     289999999988887764 44


Q ss_pred             hccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHH
Q psy15864        161 LYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIV  240 (553)
Q Consensus       161 ~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (553)
                      ++++||+|+....+...+.        +.. .......           ..   ...........+..++.+    .++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~-----------~~---~~~~~~~~~~~~~~~~~~----~~~~  255 (438)
T TIGR00712       203 FAMMRDTPQSCGLPPIEEY--------RND-YPDDYNE-----------KA---EQELTAKEIFMQYVLPNK----LLWY  255 (438)
T ss_pred             HHhccCCHHhcCCCCchhc--------ccc-ccccccc-----------cc---ccccchHHHHHHHHccCc----hHHH
Confidence            5557887653110000000        000 0000000           00   000000000011122222    2222


Q ss_pred             HHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHH
Q psy15864        241 TSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA  318 (553)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  318 (553)
                      ..+..++.+...+.+..|.|.+++. .|++.. ..+..++..++.+++.+++|+++||+++++....+..+..+..+...
T Consensus       256 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  335 (438)
T TIGR00712       256 IAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVI  335 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHH
Confidence            2222333334445566788888765 465433 34666778888999999999999999754433333322222211111


Q ss_pred             HHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHH-HHHHHHhHHHHhhcc
Q psy15864        319 VYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFA-FAVNKLYYPMLDTFH  397 (553)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~-~i~~~~~~~~~~~~g  397 (553)
                      .+..  .  ...+.+..++..++.+++.. +........+.|.+|++.||+++|+.+.++++++ +++|.+.|.+.+..+
T Consensus       336 ~~~~--~--~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g  410 (438)
T TIGR00712       336 VYWM--N--PAGNPLVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  410 (438)
T ss_pred             HHHh--c--CCCchHHHHHHHHHHHHHHc-cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc
Confidence            1110  0  01222333233333333211 1111112456799999999999999998888875 678999999999888


Q ss_pred             chhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        398 LWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      +...+.+.+++.++..++.++++||.+
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       411 WDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            777777777777777777777788754

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.77  E-value=2e-18  Score=181.71  Aligned_cols=312  Identities=16%  Similarity=0.053  Sum_probs=171.8

Q ss_pred             cccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHh
Q psy15864         88 EKGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCAL  161 (553)
Q Consensus        88 ~~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~  161 (553)
                      --.|++.|++.+  .+...+++.|++|+++|+++++++.++..+|.++++.++..+    +||+.|++.+++.++.+++.
T Consensus       112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~  191 (496)
T PRK03893        112 FIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLR  191 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence            345778887654  456678899999999999999999999999999998877654    89999998766555555555


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCh---------hhhhh--hh
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRP---------NYRMY--MR  230 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~  230 (553)
                      ..+||++++...+.+.............. ....... ........................         .+..+  ..
T Consensus       192 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (496)
T PRK03893        192 KNLPEAEDWKEKHAGKAPVRTMVDILYRG-EHRIINI-LLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQS  269 (496)
T ss_pred             HhCCCchhhhhhccccccchhHHHHHhcc-hhHHHHH-HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHh
Confidence            56788765422111111101100000000 0000000 000000000000000000000000         00000  00


Q ss_pred             hcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHH-hhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchh
Q psy15864        231 RTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFE-SIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTG  308 (553)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~  308 (553)
                      ....++......+..+..+........++|.++. ..|.+.. ..+..++..++.+++.+++|+++||+|||++++++.+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~  349 (496)
T PRK03893        270 SGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLL  349 (496)
T ss_pred             cccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            0011111111111112222222234567777774 5666543 3466777889999999999999999999988776655


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHH
Q psy15864        309 GSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKL  388 (553)
Q Consensus       309 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~  388 (553)
                      +..++.+++....       ..+.+...+..++.+++ +.+..++..++++|.+|++.||+++|+.+.+..+++.++|.+
T Consensus       350 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l  421 (496)
T PRK03893        350 ISQLLIIPVFAIG-------GANVWVLGLLLFFQQML-GQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPIL  421 (496)
T ss_pred             HHHHHHHHHhhcc-------ccHHHHHHHHHHHHHHH-hcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHH
Confidence            5444443332210       11112222222222222 223333444788899999999999999999999999999999


Q ss_pred             hHHHHhhccchhhHHHHHHHH
Q psy15864        389 YYPMLDTFHLWGTLYFYAAIS  409 (553)
Q Consensus       389 ~~~~~~~~g~~~~~~~~~~~~  409 (553)
                      .+.+.+..++...+...++++
T Consensus       422 ~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        422 GALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             HHHHhccCChHHHHHHHHHHH
Confidence            999998888665554444333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.77  E-value=9.7e-18  Score=169.71  Aligned_cols=269  Identities=14%  Similarity=0.008  Sum_probs=166.3

Q ss_pred             ccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhc-
Q psy15864         90 GTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALY-  162 (553)
Q Consensus        90 gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~-  162 (553)
                      .|++.|++.+.  +....++.+++| ++|++++++...+..+|.++++.+...+    +||+.|++.++++++..+..+ 
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890        97 TYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             HHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            46677776543  345567788887 6799999999999999987655443332    899999999988877755544 


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      +++++|+.. .+.+.              ....                         .........+++..+...+.  
T Consensus       176 ~~~~~~~~~-~~~~~--------------~~~~-------------------------~~~~~~~~~~~~~~~~~~~~--  213 (377)
T TIGR00890       176 LIGYPPGQL-IKTNI--------------EVSV-------------------------KDYTVWEMLRTPQFWVLYLS--  213 (377)
T ss_pred             heecCchhc-cccCc--------------ccch-------------------------hhhhHHHHHcCccHHHHHHH--
Confidence            455443210 00000              0000                         00011112222222211111  


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYA  321 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~  321 (553)
                        .+...........+.+.+.+..+.+.. ......+..++.+++.+++|+++||+|||+.+.++.++.+++.+++....
T Consensus       214 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  291 (377)
T TIGR00890       214 --FFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP  291 (377)
T ss_pred             --HHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc
Confidence              111112222233344445555565433 33566678888999999999999999999998888777777766554421


Q ss_pred             HhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhh
Q psy15864        322 QFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGT  401 (553)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~  401 (553)
                             ....+..+...++.+++.+...... ..+++|.+|++.|+++.|+.+....+++.++|.+.+.+.+..++...
T Consensus       292 -------~~~~~~~~~~~~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  363 (377)
T TIGR00890       292 -------MLNDVLFLATVALVFFTWGGTISLF-PSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYT  363 (377)
T ss_pred             -------cchhHHHHHHHHHHHHHhccchhcc-HHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhH
Confidence                   1122223333444555544443333 47889999999999999999999999999999999999988886666


Q ss_pred             HHHHHHHHHH
Q psy15864        402 LYFYAAISVV  411 (553)
Q Consensus       402 ~~~~~~~~~~  411 (553)
                      +.+.+++.++
T Consensus       364 f~~~~~~~~~  373 (377)
T TIGR00890       364 FIVTGAFALT  373 (377)
T ss_pred             HHHHHHHHHH
Confidence            6555554444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.76  E-value=1.7e-17  Score=168.91  Aligned_cols=276  Identities=13%  Similarity=0.054  Sum_probs=173.4

Q ss_pred             cccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----chHHHHHHHHHHHHHHHHHh
Q psy15864         89 KGTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILALCAL  161 (553)
Q Consensus        89 ~gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----gWr~~f~i~~i~~li~~i~~  161 (553)
                      -+|+++|+|.+.  +...+++.+++| ++|+++++++.++..+|..+++.++..+     +||+.+.+.+++.++.++.+
T Consensus       102 ~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  180 (393)
T PRK09705        102 SSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAW  180 (393)
T ss_pred             HHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            468999998763  455678899987 7899999999887777777776665543     89999877666655444333


Q ss_pred             ccc-cCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHH
Q psy15864        162 YFI-PESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIV  240 (553)
Q Consensus       162 ~~l-pEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (553)
                      ++. ++.|+     .+  +              .                      ..   ....+.+.++    + .+.
T Consensus       181 ~~~~~~~~~-----~~--~--------------~----------------------~~---~~~~~~l~~~----~-~~~  209 (393)
T PRK09705        181 WWQSAREVA-----SS--H--------------K----------------------TT---TTPVRVVFTP----R-AWT  209 (393)
T ss_pred             HHHhcCCCc-----cc--c--------------C----------------------CC---cCCcccccCH----h-HHH
Confidence            332 22111     00  0              0                      00   0001111111    1 111


Q ss_pred             HHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        241 TSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                      ..+..+....++..+..|+|.++.+.+.+.. ......+.+++.++|.++.+++.||+|||+.+.++..+.+++.+++..
T Consensus       210 l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~  289 (393)
T PRK09705        210 LGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW  289 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence            2222223334455666778888877776544 346677888999999999999999999998888777666666554432


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeecccc-ccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVF-PNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                      .        ..+....  ..++.+++.+..... ......+.+ |++.|++.+|+.+.++.+++.++|.+.+++.+..|.
T Consensus       290 ~--------~~~~~~~--~~~l~g~g~g~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~  358 (393)
T PRK09705        290 L--------PLQLPVL--WAMVCGLGLGGAFPL-CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN  358 (393)
T ss_pred             c--------cchHHHH--HHHHHHHhccchHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            1        1111111  223334444333322 234445655 467899999999999999999999999999998875


Q ss_pred             hhh-HHHHHHHHHHHHhhheEEcccCCCCC
Q psy15864        399 WGT-LYFYAAISVVGTLYMYFVMPETEGRT  427 (553)
Q Consensus       399 ~~~-~~~~~~~~~~~~~~~~~~~pet~~~~  427 (553)
                      +.. +.+.++++++..++.+.+.||++++.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        359 YLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhccccccch
Confidence            444 44444555555556677889987654

>TIGR00895 2A0115 benzoate transport

Probab=99.75  E-value=1.2e-17  Score=170.56  Aligned_cols=280  Identities=18%  Similarity=0.194  Sum_probs=171.6

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHH-HHHh
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILA-LCAL  161 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~-~i~~  161 (553)
                      -.|++.|++.+  .+...+++.|++|+++|++++++..++..+|.++++.+++.+    +||+.|++.+++.++. ++..
T Consensus       110 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  189 (398)
T TIGR00895       110 ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM  189 (398)
T ss_pred             HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence            45777777654  456779999999999999999999999999999988877654    9999999987665555 4455


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      +++||++++...+ +.++..+...........+... ...           ............++.+++.+..+... ..
T Consensus       190 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  255 (398)
T TIGR00895       190 RFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALP-----------EQKATQGTKRSVFKALFQGKTARITV-LL  255 (398)
T ss_pred             HhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-ccc-----------ccccccchhhHHHHHHhcchhHHHHH-HH
Confidence            5689987654333 2222222222211100000000 000           00000000011122222222222222 22


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVY  320 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  320 (553)
                      .+..+...........+.|.+....+.+.. ......+..++.+++.+++++++||+|||..+ .+..+..+..+++...
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~  334 (398)
T TIGR00895       256 WLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA-LLLLLGAVFAVLVGST  334 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHH
Confidence            222333344455566677766666666543 34666777889999999999999999998433 3333333322222221


Q ss_pred             HHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        321 AQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                              ..+.+..++..++.+++.+..... .+++++|.+|++.|+++.|+.+.+..+++.++|.+.|++
T Consensus       335 --------~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       335 --------LFSPTLLLLLGAIAGFFVNGGQSG-LYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             --------hhCHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence                    224445556666777766655544 458999999999999999999999999999999888864

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.75  E-value=2.3e-17  Score=169.24  Aligned_cols=274  Identities=12%  Similarity=0.034  Sum_probs=172.3

Q ss_pred             ccccccccccc-chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHh-c
Q psy15864         89 KGTFLYKMAAP-LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCAL-Y  162 (553)
Q Consensus        89 ~gr~~~G~ga~-~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~-~  162 (553)
                      -.|++.|++.+ .+...+++.+++|+++|++++++..++..+|.++++++++.+    +||+.|++.+++.++..++. +
T Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (408)
T PRK09874        112 ILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF  191 (408)
T ss_pred             HHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777544 344557788999999999999999999999999888887765    89999999988877665544 4


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      +++|.++..   .+.+.                  ....                     ..+..+.+++.....+...+
T Consensus       192 ~~~~~~~~~---~~~~~------------------~~~~---------------------~~~~~~~~~~~~~~~~~~~~  229 (408)
T PRK09874        192 CIRENFQPV---SKKEM------------------LHMR---------------------EVVTSLKNPKLVLSLFVTTL  229 (408)
T ss_pred             HhccCcccc---cchhh------------------hHHH---------------------HHHHhCcCCchHHHHHHHHH
Confidence            466653210   00000                  0000                     00011111111111111111


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhhCCC-CCh----HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESIHAP-LDP----YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVV  317 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~----~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  317 (553)
                          ........+..+.+.+....+.. .+.    .....+.+++.+++.++.|+++||+|||+.+.++.++.+++.+.+
T Consensus       230 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  305 (408)
T PRK09874        230 ----IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPM  305 (408)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence                11111222233344444332221 111    123344567778888999999999999998887776665555544


Q ss_pred             HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        318 AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      ..         ..+.+.+++..++.+++.+...... .+++.+..|++.||+.+++.+.+..++..++|.+.+.+.+..+
T Consensus       306 ~~---------~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g  375 (408)
T PRK09874        306 SF---------VQTPLQLGILRFLLGAADGALLPAV-QTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG  375 (408)
T ss_pred             HH---------hccHHHHHHHHHHHHhhhHhhHHHH-HHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence            43         3344555566666676665544333 3666788899999999999999999999999999999988888


Q ss_pred             chhhHHHHHHHHHHHHhhheE
Q psy15864        398 LWGTLYFYAAISVVGTLYMYF  418 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~  418 (553)
                      +...+.+.+++.++..++.++
T Consensus       376 ~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        376 FRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            777777777666666655544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.75  E-value=3.7e-17  Score=170.54  Aligned_cols=295  Identities=11%  Similarity=0.030  Sum_probs=171.5

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----chHHHHHHHHHHHHHHHHHh
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILALCAL  161 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----gWr~~f~i~~i~~li~~i~~  161 (553)
                      -.|+++|++.+  .+....++.|++|+++|++++++...+..+|.++++++++.+     +||++|++.++++++..+++
T Consensus       136 ~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~  215 (465)
T TIGR00894       136 FCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLW  215 (465)
T ss_pred             HHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHH
Confidence            36778887654  456678999999999999999999999999999888776543     89999999999888776655


Q ss_pred             cc-ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHH
Q psy15864        162 YF-IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIV  240 (553)
Q Consensus       162 ~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (553)
                      ++ .+|+|+.... .+.++.                    +.+.+..     ............++.++    ..+.++.
T Consensus       216 ~~~~~~~p~~~~~-~~~~~~--------------------~~i~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~  265 (465)
T TIGR00894       216 FVFPADDPSIHPC-ISKFEK--------------------KYINSSL-----QGQKGSTRQSLPIKAIP----KSLPVWA  265 (465)
T ss_pred             HHHhcCCcccCCC-CCHHHH--------------------HHHHhhc-----ccccCCCCCCCCHHHHh----cCHHHHH
Confidence            54 6677642110 000000                    0000000     00000001111233333    2333444


Q ss_pred             HHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecc---hhHHHHHHH
Q psy15864        241 TSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALIS---TGGSAACFI  315 (553)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~---~~~~~i~~~  315 (553)
                      ..+..++...+.+.+..|+|.++.+ .+++.. ..+...+..++.+++.+++|+++||+++|+.....   .++..++.+
T Consensus       266 ~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  345 (465)
T TIGR00894       266 IWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGL  345 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            5555566666677778889988754 466543 34566677889999999999999998765433211   111111111


Q ss_pred             HHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        316 VVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      +......... ....+.+..+++..+.+.+.+... +..+....|..|. .+|++.++.+..+.++++++|.+.+.+.+.
T Consensus       346 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~  422 (465)
T TIGR00894       346 GPGIFAYALP-YLSAAFYLTIIILTLANAVSSGPL-AGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQ  422 (465)
T ss_pred             HHHHHHHHHH-HcCCchHHHHHHHHHHHHHhhhhh-hhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence            1110000000 001222333333333333332222 2223455577765 789999999999999999999999987754


Q ss_pred             c--c-chhhHHHHHHHHHHHHhhh
Q psy15864        396 F--H-LWGTLYFYAAISVVGTLYM  416 (553)
Q Consensus       396 ~--g-~~~~~~~~~~~~~~~~~~~  416 (553)
                      .  + |...+.+.+++.++..++.
T Consensus       423 ~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       423 DSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHe
Confidence            3  3 3344555554555544443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.74  E-value=5.4e-17  Score=162.47  Aligned_cols=249  Identities=24%  Similarity=0.230  Sum_probs=189.1

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhc
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALY  162 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~  162 (553)
                      -.|++.|++.+  .+...+++.|++|+++|++.+++...+..+|.++++.++..+    +||+.|++.+++.++..++.+
T Consensus        92 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (352)
T cd06174          92 VGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL  171 (352)
T ss_pred             HHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            35677777654  457779999999999999999999999999999999888776    799999999888877766554


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      +++                                                                      +.++...
T Consensus       172 ~~~----------------------------------------------------------------------~~~~~~~  181 (352)
T cd06174         172 FLL----------------------------------------------------------------------RLLLLLA  181 (352)
T ss_pred             HHH----------------------------------------------------------------------HHHHHHH
Confidence            443                                                                      0112223


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhh-CCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcc-eeecchhHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESI-HAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRP-LALISTGGSAACFIVVAV  319 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~-~l~~~~~~~~i~~~~~~~  319 (553)
                      +..+...........+.+.+..+. +.+.. ..+...+..++.+++.++.++++||+|||+ .+.++.++..++.+++..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  261 (352)
T cd06174         182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL  261 (352)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            333444444556666777777654 44432 346677788999999999999999999999 888888877777776665


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccch
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW  399 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~  399 (553)
                               ..+.+..++..++.+++.+... +....++.|.+|++.|++..|+.+....+++.+++.+.+.+.+..++.
T Consensus       262 ---------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~  331 (352)
T cd06174         262 ---------APSLALLLVALLLLGFGLGFAF-PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG  331 (352)
T ss_pred             ---------hccHHHHHHHHHHHHHHHhccc-hhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence                     3345566666777777665554 444689999999999999999999999999999999999999888877


Q ss_pred             hhHHHHHHHHHHHHhhhe
Q psy15864        400 GTLYFYAAISVVGTLYMY  417 (553)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~  417 (553)
                      ..+.+.+++.++..++.+
T Consensus       332 ~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         332 GVFLILAALALLAALLLL  349 (352)
T ss_pred             hHHHHHHHHHHHHHHHhe
Confidence            777777776666655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.73  E-value=1e-16  Score=167.44  Aligned_cols=271  Identities=13%  Similarity=0.053  Sum_probs=163.4

Q ss_pred             hhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhccc-----cchHHHHHHHHHHHHHHHHHhccccCCceeeeecCC
Q psy15864        102 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILALCALYFIPESPHWLISQGR  176 (553)
Q Consensus       102 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~-----lgWr~~f~i~~i~~li~~i~~~~lpEsp~~l~~~~~  176 (553)
                      ...+++.|++|+++|+++.++..+++.+|.++++.++.+     .|||++|++.+++.++.++..+++||+++..   .+
T Consensus       127 ~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~  203 (491)
T PRK11010        127 VFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PV  203 (491)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc
Confidence            455889999999999999999999999999888755443     3899999999988887766666688875321   00


Q ss_pred             hHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHH
Q psy15864        177 MQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQ  256 (553)
Q Consensus       177 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (553)
                      .+.                ...   ..                  ...+..+++++..+..++..++..    .+.....
T Consensus       204 ~~~----------------~~~---~~------------------~~~l~~~~~~~~~~~~ll~~~l~~----~~~~~~~  242 (491)
T PRK11010        204 PKT----------------LEQ---AV------------------VAPLRDFFGRNNAWLILLLIVLYK----LGDAFAM  242 (491)
T ss_pred             ccc----------------hhh---hH------------------HHHHHHHHcCcCHHHHHHHHHHHH----HHHHHHH
Confidence            000                000   00                  011222232222222222222111    1122222


Q ss_pred             hhHHHHH-HhhCCCCChH-HHH-HHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCCh
Q psy15864        257 TYAVGIF-ESIHAPLDPY-FAT-LLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPL  333 (553)
Q Consensus       257 ~~~~~~~-~~~g~~~~~~-~~~-~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  333 (553)
                      .+.+.++ +..|++.... +.. ....++.++|.+++|+++||+|+|+.+.++.++.+++.+++......     ..+.+
T Consensus       243 ~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-----~~~~~  317 (491)
T PRK11010        243 SLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-----DKNLY  317 (491)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-----cccHH
Confidence            3334443 4466654433 333 34457889999999999999999887666555444444333221110     12222


Q ss_pred             hHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHH
Q psy15864        334 VPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGT  413 (553)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  413 (553)
                      .+.+..++..++.+.+.... +++..++.+.+.+++..|+.+....+++.+++.+.|.+.+..|+...+.+.+++.++..
T Consensus       318 ~l~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l  396 (491)
T PRK11010        318 SMGAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGL  396 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            23333334333333344333 47778899999999999999999999999999999999998886655555555554444


Q ss_pred             hhheEEcccC
Q psy15864        414 LYMYFVMPET  423 (553)
Q Consensus       414 ~~~~~~~pet  423 (553)
                      ++. .+++++
T Consensus       397 ~~~-~~~~~~  405 (491)
T PRK11010        397 LLL-LVCRQT  405 (491)
T ss_pred             HHH-HHHHhc
Confidence            433 334443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.72  E-value=7.3e-17  Score=162.59  Aligned_cols=257  Identities=12%  Similarity=0.009  Sum_probs=166.8

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhc
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALY  162 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~  162 (553)
                      -.|+++|++.+  .+...+++.|++|+++|+++.++...+..+|.++++++++.+    +||+.|++.++..++..++.+
T Consensus        97 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900        97 VLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            35777777665  345678999999999999999999999999999999887765    999999998877766654443


Q ss_pred             c--ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHH
Q psy15864        163 F--IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIV  240 (553)
Q Consensus       163 ~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (553)
                      +  .||.++..  +...+                  .....+..                  ..++.+++++..+...+.
T Consensus       177 ~~~~~~~~~~~--~~~~~------------------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~  218 (365)
T TIGR00900       177 SVRIPELAASE--IQALS------------------NAVLRDTR------------------EGIKFVLKNPLLRTLLLL  218 (365)
T ss_pred             hcccccCCCcc--ccccc------------------hhHHHHHH------------------hHHHHHHcCcHHHHHHHH
Confidence            3  34432100  00000                  00000000                  112223333322222222


Q ss_pred             HHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHH
Q psy15864        241 TSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA  318 (553)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  318 (553)
                      .++..+..   ......+.|.+... .+.+.. ......+.+++.+++.++.+++.||++||+.+..+.++.+++.+++.
T Consensus       219 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  295 (365)
T TIGR00900       219 ALLFNLVF---APAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG  295 (365)
T ss_pred             HHHHHHHH---HHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence            22211111   11222455666554 455433 34566677888999999999999999999887776665555555444


Q ss_pred             HHHHhhcccCCC-CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc
Q psy15864        319 VYAQFHLSYGWD-SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF  396 (553)
Q Consensus       319 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~  396 (553)
                      +         .. +.+..++..++.+++.+... +...+++.|.+|++.|+++.|+.+.+..+++.+++.+.+.+.+..
T Consensus       296 ~---------~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       296 L---------TPPNFPLFLVLWFAIGVGYGPIN-VPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             h---------hchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3         22 24555666667776665544 444588899999999999999999999999999999999888754

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.72  E-value=2e-16  Score=161.02  Aligned_cols=262  Identities=15%  Similarity=0.112  Sum_probs=161.3

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhc-
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALY-  162 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~-  162 (553)
                      .|+++|++.+  .+...+++.|++|+++|+++.++...+.++|.+++++++..+    |||+.|++.++++++++++.+ 
T Consensus       114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~  193 (394)
T PRK10213        114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIK  193 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            5778888765  467778999999999999999999999999988888887765    999999998887776654443 


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      .+||+|+..   .+   ..                                         ......++++..+..++.  
T Consensus       194 ~~p~~~~~~---~~---~~-----------------------------------------~~~~~~l~~~~~~~~~~~--  224 (394)
T PRK10213        194 SLPSLPGEP---SH---QK-----------------------------------------QNTFRLLQRPGVMAGMIA--  224 (394)
T ss_pred             HCCCCCccc---cc---ch-----------------------------------------hHHHHHhcCHHHHHHHHH--
Confidence            477764210   00   00                                         000111222212211111  


Q ss_pred             HHHHHhhhhhHHHHhh-HHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTY-AVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVY  320 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  320 (553)
                        .+..+.+......+ .|.+.+..|++... .......+++.+++.++.+++.||.+++ .++.+.++..++.+++...
T Consensus       225 --~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~~  301 (394)
T PRK10213        225 --IFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTLW  301 (394)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHH
Confidence              12222222223334 36566666766543 4556677888999999999999995443 3333333323332222221


Q ss_pred             HHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchh
Q psy15864        321 AQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWG  400 (553)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~  400 (553)
                              ..+.+.+++..++.+++.+....... +++.+..|. .++...++...+..++..+++.+.|.+.+..+...
T Consensus       302 --------~~~~~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~  371 (394)
T PRK10213        302 --------GSDKIVATGVAIIWGLTFALVPVGWS-TWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTS  371 (394)
T ss_pred             --------hhhHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence                    23445555566666666544443333 567777774 45666677777888999999999999999887655


Q ss_pred             hHHHHHHHHHHHH
Q psy15864        401 TLYFYAAISVVGT  413 (553)
Q Consensus       401 ~~~~~~~~~~~~~  413 (553)
                      .+...+++.++..
T Consensus       372 ~~~~~~~~~~~~~  384 (394)
T PRK10213        372 PLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555444443433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.72  E-value=1.2e-16  Score=162.88  Aligned_cols=259  Identities=14%  Similarity=0.091  Sum_probs=151.6

Q ss_pred             hhhhhhhhccCcccc--cchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHH-hccccCCceeeeec
Q psy15864        102 LVLTYVAEITQPHLR--GMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCA-LYFIPESPHWLISQ  174 (553)
Q Consensus       102 ~~~~~i~e~~p~~~R--g~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~-~~~lpEsp~~l~~~  174 (553)
                      ...+++.++.+++.|  +...++.+++.++|.++++++++.+    |||+.|++.++++++..++ ++++||.++-.   
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---  201 (393)
T PRK15011        125 QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKEL---  201 (393)
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCC---
Confidence            444667777766555  3455777888888888888887655    9999999998887776544 44578765310   


Q ss_pred             CChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHH
Q psy15864        175 GRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTT  254 (553)
Q Consensus       175 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (553)
                      .. ..              ..    .                      ...+  ..++.....+...    ...+.....
T Consensus       202 ~~-~~--------------~~----~----------------------~~~~--~~~~~~~~~~~~~----~~~~~~~~~  234 (393)
T PRK15011        202 PL-AT--------------GT----L----------------------EAPR--RNRRDTLLLFVIC----TLMWGTNSL  234 (393)
T ss_pred             cc-cc--------------cc----c----------------------cccc--cccccHHHHHHHH----HHHHHHHHH
Confidence            00 00              00    0                      0000  0001011111111    111222333


Q ss_pred             HHhhHHHHHH-hhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCC
Q psy15864        255 LQTYAVGIFE-SIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSP  332 (553)
Q Consensus       255 ~~~~~~~~~~-~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  332 (553)
                      +..+.|.+++ ..+.+... .+...+..++.+++.+++|+++||+|||+.+..+.+..++..+.+..         ..+.
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~---------~~~~  305 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM---------AHSP  305 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---------HhhH
Confidence            3445666654 34555332 34444555677888999999999999998766554444333322221         2233


Q ss_pred             hhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHH
Q psy15864        333 LVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVG  412 (553)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~  412 (553)
                      +..++..++.+++.+...... .++..|.+|. .|+++.++.+....+++.+++.+.+.+.+..++...+.+.+++.++ 
T Consensus       306 ~~~l~~~~l~~~~~g~~~~~~-~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~-  382 (393)
T PRK15011        306 AILLGLQLLNAIYIGILGGIG-MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIA-  382 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-
Confidence            444444444444444433333 3667898886 4899999998889999999999999998887765555544444444 


Q ss_pred             HhhheEEccc
Q psy15864        413 TLYMYFVMPE  422 (553)
Q Consensus       413 ~~~~~~~~pe  422 (553)
                      .++.++++||
T Consensus       383 ~~~~~~~~~~  392 (393)
T PRK15011        383 TLFCLLRIKD  392 (393)
T ss_pred             HHHHHHhhcC
Confidence            4444445554

>PRK03699 putative transporter; Provisional

Probab=99.72  E-value=1e-16  Score=163.45  Aligned_cols=267  Identities=9%  Similarity=0.042  Sum_probs=168.8

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhccc-----cchHHHHHHHHHHHHHHHHHh
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILALCAL  161 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~-----lgWr~~f~i~~i~~li~~i~~  161 (553)
                      -.|+++|++.+  .+...+++.|++|+++|+.++++...+..+|..+++.+...     .+||++|++.+++.++.+++.
T Consensus       100 ~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        100 IAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            35777887654  44667889999999999999998888888887777766543     389999999888777665444


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      ++. +.|+.. .+.+ +             +.                       .     ...    +..+.. .++..
T Consensus       180 ~~~-~~p~~~-~~~~-~-------------~~-----------------------~-----~~~----~~~~~~-~~~~~  210 (394)
T PRK03699        180 LFS-EFPALG-KHAP-K-------------AD-----------------------K-----PVA----KEKWGI-GVLFL  210 (394)
T ss_pred             Hhc-CCcccc-ccCc-c-------------cc-----------------------C-----ccc----cccCCh-HHHHH
Confidence            332 222100 0000 0             00                       0     000    000111 12222


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                      .+..+......+.+..|+|.++++ .+++.. .....+...++.++|.++.|+++||++||+.+.....+.+++.+++..
T Consensus       211 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~  290 (394)
T PRK03699        211 AIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN  290 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            222333334445666788888854 566543 345666777889999999999999999998877666555444433322


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccch
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW  399 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~  399 (553)
                               ..+.+...+..++.+++.+..+.. ..++..+..|. .++...++...+..+++.++|.+.+++.+..++.
T Consensus       291 ---------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~  359 (394)
T PRK03699        291 ---------TDDPSHLLYAILGLGFFSSAIYTT-IITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQ  359 (394)
T ss_pred             ---------cCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCch
Confidence                     334444445555666555444333 33566676654 4577788888889999999999999999988877


Q ss_pred             hhHHHHHHHHHHHHhh
Q psy15864        400 GTLYFYAAISVVGTLY  415 (553)
Q Consensus       400 ~~~~~~~~~~~~~~~~  415 (553)
                      ..+++.+++++++.++
T Consensus       360 ~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        360 AALLTANGLYAVVFVM  375 (394)
T ss_pred             hhhhhhHHHHHHHHHH
Confidence            7777666665555443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.71  E-value=2.2e-16  Score=160.32  Aligned_cols=264  Identities=12%  Similarity=0.075  Sum_probs=156.4

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHH-hc
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCA-LY  162 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~-~~  162 (553)
                      .|+++|++.+  .+...+++.+++|+++|+++++++..+..+|..+++.+++.+    +||++|++.+++++++++. ++
T Consensus        97 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091         97 GRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            5788888755  345667889999999999999999999999988888776554    8999999998887766543 34


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      ++||.++-    .+.                 ...                         ..++.+.++. .+   ... 
T Consensus       177 ~lp~~~~~----~~~-----------------~~~-------------------------~~~~~~~~~~-~~---~~~-  205 (382)
T PRK10091        177 WVPDIRDE----AKG-----------------GLR-------------------------EQFHFLRSPA-PW---LIF-  205 (382)
T ss_pred             hCCCCCcc----ccc-----------------CHH-------------------------HHHHHhcChH-HH---HHH-
Confidence            57875420    000                 000                         0001111111 11   111 


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHH-hhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFE-SIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVY  320 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  320 (553)
                      +..+....+......|.+.++. ..|.+.. ..+...+.+++.+++.++.+++.||+|+|+.+.++.++.+++.+++...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~  285 (382)
T PRK10091        206 AATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF  285 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH
Confidence            1111111222222234444443 4565543 3466677888999999999999999999998887777766666544332


Q ss_pred             HHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-cch
Q psy15864        321 AQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF-HLW  399 (553)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-g~~  399 (553)
                              .++.+..++..++.+++......+.......+..|.+.++.+  ..+....+++.++|.+.+.+.+.. ++.
T Consensus       286 --------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~  355 (382)
T PRK10091        286 --------GGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYN  355 (382)
T ss_pred             --------HhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcc
Confidence                    122233333333343333222222222333444555555544  346678899999999999998864 444


Q ss_pred             hhHHHHHHHHHHHHh
Q psy15864        400 GTLYFYAAISVVGTL  414 (553)
Q Consensus       400 ~~~~~~~~~~~~~~~  414 (553)
                      ..+.+.++++++...
T Consensus       356 ~~~~~~~~~~~~~~~  370 (382)
T PRK10091        356 YVALPAALLSFAAMS  370 (382)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            455544444444333

>TIGR00897 2A0118 polyol permease family

Probab=99.71  E-value=4.9e-16  Score=158.87  Aligned_cols=278  Identities=12%  Similarity=0.023  Sum_probs=164.3

Q ss_pred             cccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHH-HHHHhhcccc----chHHHHHHHHHHHHHHHHH-
Q psy15864         89 KGTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGT-VSQLFLGSFL----HWRSAAILNLLFPILALCA-  160 (553)
Q Consensus        89 ~gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~-~l~~~l~~~l----gWr~~f~i~~i~~li~~i~-  160 (553)
                      -.|+++|+|.+.  +...+++.+++|+++|++++++..++..+|. ++++++++.+    ||+..++......++..++ 
T Consensus       110 ~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  189 (402)
T TIGR00897       110 LFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIA  189 (402)
T ss_pred             HHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence            357888887653  2445678899999999999999999999986 5677766543    7665555443333333222 


Q ss_pred             hccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHH
Q psy15864        161 LYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIV  240 (553)
Q Consensus       161 ~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (553)
                      .+++++.+.-. .+++..                .    ..+..                  ..++.+++.+..    +.
T Consensus       190 ~~~~~~~~~~~-~~~~~~----------------~----~~~~~------------------~~~~~~~~~~~~----~~  226 (402)
T TIGR00897       190 LFSNKDIFTPQ-HMQTRE----------------K----FSELG------------------KAATILFTNPNV----LL  226 (402)
T ss_pred             HhccCCCCCcc-cccCCc----------------c----hhhHH------------------HHHHHHHcChhH----HH
Confidence            22344321100 000000                0    00000                  011122222222    22


Q ss_pred             HHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceee-cchhHHHHHHHHHH
Q psy15864        241 TSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLAL-ISTGGSAACFIVVA  318 (553)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~  318 (553)
                      ..+..++.....+.+..|.|.+.+..|.+... .....+..++.+++.++.|+++||+|||+.+. .+.+..+++.+.+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~  306 (402)
T TIGR00897       227 GGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALY  306 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            22223333444556677888888777766443 34555677889999999999999999887653 22223333322222


Q ss_pred             HHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        319 VYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                      .....    ...+.+..++..++.+++.+.. .+.. ..+.+..| +.||++.|+.+....+++.++|.+.+.+.+..++
T Consensus       307 ~~~~~----~~~~~~~~~~~~~~~G~~~~~~-~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~  379 (402)
T TIGR00897       307 YIPQH----FGHSFAVALIIAIALGIFLAGY-VPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGA  379 (402)
T ss_pred             HHHHc----cCCcHHHHHHHHHHHHHHHHHH-HHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            21110    0123344445555556555432 3333 45567655 5899999999999999999999999999998887


Q ss_pred             hhhHHHHHHHHHHHHhhh
Q psy15864        399 WGTLYFYAAISVVGTLYM  416 (553)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~  416 (553)
                      ...+++.+++.++..++.
T Consensus       380 ~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       380 IGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777776666655544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2532|consensus

Probab=99.71  E-value=4.3e-17  Score=166.15  Aligned_cols=291  Identities=18%  Similarity=0.180  Sum_probs=186.1

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----chHHHHHHHHHHHHHHHHHhc
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILALCALY  162 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----gWr~~f~i~~i~~li~~i~~~  162 (553)
                      -|+++|++.+  ++....+.+.|+|+++|++..++...+..+|.+++..+++.+     ||+++|++.++++++..++++
T Consensus       134 ~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~  213 (466)
T KOG2532|consen  134 LRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWF  213 (466)
T ss_pred             HHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Confidence            4888887654  667778999999999999999999999999988877665544     999999999999999977765


Q ss_pred             c-ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        163 F-IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       163 ~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      + ..|+|.-.   ..                  -...|.+.+.+......    .. .....+++.+++.    +.++++
T Consensus       214 ~~~~d~P~~h---~~------------------is~~El~~I~~~k~~~~----~~-~~~~vP~~~i~ts----~~vwai  263 (466)
T KOG2532|consen  214 LFYSDSPSKH---PN------------------ISEKELKYIEKGKSEAH----VK-KKPPVPYKAILTS----PPVWAI  263 (466)
T ss_pred             HHhcCCcccC---CC------------------CCHHHHHHHHhcccccc----cC-CCCCCCHHHHHcC----HHHHHH
Confidence            5 66777421   11                  11112222222111100    00 0023445555444    345666


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCc---------ceeecchhHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKR---------PLALISTGGS  310 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr---------~~l~~~~~~~  310 (553)
                      .+..++...+.+.+..|+|.|+++ .+++. +..+..++..+..++..+++|.++|++-+|         ..-.++..+.
T Consensus       264 ~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~  343 (466)
T KOG2532|consen  264 WISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGP  343 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHH
Confidence            666777788888999999999975 56654 345777788899999999999999998764         1122333333


Q ss_pred             HHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhH
Q psy15864        311 AACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYY  390 (553)
Q Consensus       311 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~  390 (553)
                      +++++++++..       ....+..+++..+...+.|...... +.-..+..| +.-+..+|+.+.+..+.++++|.+.+
T Consensus       344 ai~l~~l~~~~-------~~~~~~a~~~l~~~~~~~g~~~~Gf-~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg  414 (466)
T KOG2532|consen  344 AVFLLVLAFTS-------DEHRLLAVILLTIAIGLSGFNISGF-YKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVG  414 (466)
T ss_pred             HHHHHeeeecC-------CCcchHHHHHHHHHHHHcccchhhh-Hhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            34443333321       1122233333222222222222222 122233344 55599999999999999999999999


Q ss_pred             HHHhh---ccchhhHHHHHHHHHHHHhhheEE
Q psy15864        391 PMLDT---FHLWGTLYFYAAISVVGTLYMYFV  419 (553)
Q Consensus       391 ~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~  419 (553)
                      .+...   ..|...|++.+++.++..++..++
T Consensus       415 ~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  415 IIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             eEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            98842   356667777777777766555444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.71  E-value=1e-16  Score=167.07  Aligned_cols=280  Identities=13%  Similarity=0.076  Sum_probs=147.3

Q ss_pred             cccccccccccc-hhhhhhhhhccCcccccchhchhhhhHHHHHHHH----Hhhcc---------ccchHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAPL-VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQ----LFLGS---------FLHWRSAAILNLLFP  154 (553)
Q Consensus        89 ~gr~~~G~ga~~-~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~----~~l~~---------~lgWr~~f~i~~i~~  154 (553)
                      -.|+++|++... ..+..+++|++|+++||+++++...+..+|..++    +.+..         ..|||+.|++.++++
T Consensus       129 ~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~  208 (476)
T PLN00028        129 AVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLH  208 (476)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Confidence            357888876542 3345678999999999999999876555555544    33321         138999999999988


Q ss_pred             HHHHHHhcccc-CCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcc
Q psy15864        155 ILALCALYFIP-ESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTF  233 (553)
Q Consensus       155 li~~i~~~~lp-Esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (553)
                      +++.++.++++ +.|.     +...+..+       .....                       .......+...++.+ 
T Consensus       209 l~~~l~~~~~~~~~p~-----~~~~~~~~-------~~~~~-----------------------~~~~~~~~~~~~~~~-  252 (476)
T PLN00028        209 IIMGILVLTLGQDLPD-----GNYRELKK-------SGTMP-----------------------KDSFSKVLRYGVTNY-  252 (476)
T ss_pred             HHHHHHHHHHcCcCCC-----CchhhHHh-------cCccc-----------------------cccHHHHHHHHHcCc-
Confidence            87765555544 3332     01000000       00000                       000000111111111 


Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCccee----ecch
Q psy15864        234 LLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLA----LIST  307 (553)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l----~~~~  307 (553)
                        +. +...+.++........+..+.|.++.. .|++.. ......+.+++.+++.+++|+++||++||...    .+..
T Consensus       253 --~~-~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~  329 (476)
T PLN00028        253 --RT-WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALW  329 (476)
T ss_pred             --hh-HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHH
Confidence              11 122222222222233445566666543 466543 34566678899999999999999999976321    1111


Q ss_pred             hHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHH
Q psy15864        308 GGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNK  387 (553)
Q Consensus       308 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~  387 (553)
                      +..+++.+.+..+..      ..+.+..++..++++++.+.+... .+.++.++.| +.||++.|+.+..+.+++++++.
T Consensus       330 ~~~~l~~i~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~  401 (476)
T PLN00028        330 IVQTLGGVFCIWLGR------ANSLGAAIVVMILFSIFVQAACGA-TFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQL  401 (476)
T ss_pred             HHHHHHHHHHHHhcc------cchHHHHHHHHHHHHHHHHHhhhh-hcccCcccCh-hhchhhhhhhhccccHHHHHHHH
Confidence            111111111111110      222333333444444444333333 3466667654 68899999998888888888876


Q ss_pred             HhHHHHhhccchhhHHHHHHHHHHHHhhh
Q psy15864        388 LYYPMLDTFHLWGTLYFYAAISVVGTLYM  416 (553)
Q Consensus       388 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  416 (553)
                      +.+ ..+..++...+++.+++.+++.++.
T Consensus       402 l~~-~~~~~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        402 LFF-TGSSYSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             HHH-hcCCccHhhHHHHHHHHHHHHHHHH
Confidence            654 1122234455555555544444433

>KOG2533|consensus

Probab=99.70  E-value=3.2e-17  Score=167.34  Aligned_cols=274  Identities=12%  Similarity=0.075  Sum_probs=160.1

Q ss_pred             ccccccc--ccchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhccc-------c---chHHHHHHHHHHHHHHH
Q psy15864         91 TFLYKMA--APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-------L---HWRSAAILNLLFPILAL  158 (553)
Q Consensus        91 r~~~G~g--a~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~-------l---gWr~~f~i~~i~~li~~  158 (553)
                      |++.|+.  +..|....+++.|+.+++||..++++.++.++|.++|+++++.       .   ||||+|++.++++++..
T Consensus       141 r~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~g  220 (495)
T KOG2533|consen  141 RFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLG  220 (495)
T ss_pred             HHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHH
Confidence            7777763  4566777999999999999999999999999999998888776       2   99999999999998886


Q ss_pred             HHh-ccccCCce--eeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchh
Q psy15864        159 CAL-YFIPESPH--WLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLL  235 (553)
Q Consensus       159 i~~-~~lpEsp~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (553)
                      ++. +++|+.|.  +...+...+-+   ..+++..+.                        ........+. -+...+..
T Consensus       221 i~~f~~lp~~P~~~~fl~~~ek~~~---~~~~~~~~~------------------------~~~~~~~~~~-~~~~a~~d  272 (495)
T KOG2533|consen  221 IVVFFFLPDNPSKAWFLTDEEKELV---VERLRESPS------------------------GGIENKFKWK-GFKEALKD  272 (495)
T ss_pred             heEEEEecCChhhccccchHHHHHH---HHHHHhccC------------------------CCcccccCHH-HHHHHHhc
Confidence            554 55999886  22211111101   111110000                        0000001111 12222333


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcc----cCCcceeecchhH
Q psy15864        236 PYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHY----TGKRPLALISTGG  309 (553)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr----~Grr~~l~~~~~~  309 (553)
                      +.++..++..++.....+.+.+|+|.++.. .+++. +.....+...++++++.+++|+++||    ..+|......+.+
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~  352 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL  352 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            445666666777777788889999999987 33543 34467778889999999999999999    4555544444333


Q ss_pred             HHHHH-HHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhh-hHHHHHHHHHHHHHHH
Q psy15864        310 SAACF-IVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATAS-GASGSSSYIFAFAVNK  387 (553)
Q Consensus       310 ~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~-~~~~~~~~~~~~i~~~  387 (553)
                      +.+.. +.+..         .........+.+....+. ....++....+++....+.|.... ++.......+++++|.
T Consensus       353 ~~~~g~~~l~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~  422 (495)
T KOG2533|consen  353 YAIIGAISLLA---------AAVLPGAYGAFLIGPYGL-IATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ  422 (495)
T ss_pred             HHHHHHHHHHh---------hccchHHhHHHHhcchhh-HHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence            33332 33322         222222222222222222 222333346666666555544443 4444445566666665


Q ss_pred             HhHHHHhh-ccchhhH
Q psy15864        388 LYYPMLDT-FHLWGTL  402 (553)
Q Consensus       388 ~~~~~~~~-~g~~~~~  402 (553)
                      +....... +.+...+
T Consensus       423 ~~~~~~ap~y~~~~~f  438 (495)
T KOG2533|consen  423 LFRSLDAPRYGWGAVF  438 (495)
T ss_pred             hcccccCcchhhhhHH
Confidence            55443332 3444444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.70  E-value=4.7e-16  Score=157.53  Aligned_cols=266  Identities=14%  Similarity=0.070  Sum_probs=158.0

Q ss_pred             cccccccc--cchhhhhhhhhccCcccccch--hchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHh-
Q psy15864         91 TFLYKMAA--PLVLVLTYVAEITQPHLRGML--SATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCAL-  161 (553)
Q Consensus        91 r~~~G~ga--~~~~~~~~i~e~~p~~~Rg~~--~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~-  161 (553)
                      |+++|.+.  ..+...+++.|+.|+++|++.  .+....+..+|.++++.+++.+    +||++|++.+++.++..++. 
T Consensus        94 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  173 (375)
T TIGR00899        94 GVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVW  173 (375)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            55555433  234455677888887777644  5677777777777777776544    89999999988877765544 


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      +++||+|+....+..                .                             .......+++..+......
T Consensus       174 ~~~~~~~~~~~~~~~----------------~-----------------------------~~~~~~~~~~~~~~~~~~~  208 (375)
T TIGR00899       174 LFLPSYPRGAPGALT----------------R-----------------------------LEVRGLLASRDTRLLFVAC  208 (375)
T ss_pred             HhCCCcccCcccccC----------------c-----------------------------chhhhhhcCcchHHHHHHH
Confidence            448887653110000                0                             0000011111122112222


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHH-HhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIF-ESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                      ++.+.    .......+.|.++ +..+.+... .+......+..+++.+++|+++||+|||+.+.++.++..++.+.+..
T Consensus       209 ~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~  284 (375)
T TIGR00899       209 TLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA  284 (375)
T ss_pred             HHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            11111    1222233445544 344554332 23344445566778889999999999999877665544443333222


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccch
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW  399 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~  399 (553)
                               .++.+..++...+.+++.+... +....++.|..|.+ ++++.++.+.+.++++.++|.+.+.+.+..++.
T Consensus       285 ---------~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~  353 (375)
T TIGR00899       285 ---------DNSLWALLMLQLLNAIFIGILA-GIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYH  353 (375)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence                     2234444555555566555443 34447788988865 579999999999999999999999998888876


Q ss_pred             hhHHHHHHHHHHHHhhh
Q psy15864        400 GTLYFYAAISVVGTLYM  416 (553)
Q Consensus       400 ~~~~~~~~~~~~~~~~~  416 (553)
                      ..+.+.+++.++..++.
T Consensus       354 ~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       354 AVYWFAIVMLIVALFCL  370 (375)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            66666665555554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.69  E-value=4.7e-16  Score=179.83  Aligned_cols=263  Identities=10%  Similarity=-0.028  Sum_probs=169.8

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhcc
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYF  163 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~  163 (553)
                      .|+++|++.+  .++..+++.+++|+++|++++++.+++..+|.++|+++++++    +|++.|++.+++++++++++++
T Consensus       114 ~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1140)
T PRK06814        114 ALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLF  193 (1140)
T ss_pred             HHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhh
Confidence            5888888754  467889999999999999999999999999999999998876    8999996666666666666677


Q ss_pred             ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHH
Q psy15864        164 IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSL  243 (553)
Q Consensus       164 lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (553)
                      +|+++.--  .+....              ...   ..+..                  ..++...+.+..+..++..+ 
T Consensus       194 ~~~~~~~~--~~~~~~--------------~~~---~~~~~------------------~~~~~~~~~~~~~~~~~~~~-  235 (1140)
T PRK06814        194 IPKTGNAA--PDLKID--------------RNI---IRSTI------------------TLLKYAKADKRIWLAILGIS-  235 (1140)
T ss_pred             CCCCCCCC--CCCeec--------------cch---HHHHH------------------HHHHHHhcCchHHHHHHHHH-
Confidence            77654210  000000              000   00000                  11222333333322222222 


Q ss_pred             HHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHH
Q psy15864        244 FFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYA  321 (553)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~  321 (553)
                         ..+.....+..++|.++.. .+.+.. ..+..+..+++.++|.+++|+++++.+++..+.++.++.+++.+.+.+..
T Consensus       236 ---~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  312 (1140)
T PRK06814        236 ---WFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFAS  312 (1140)
T ss_pred             ---HHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcc
Confidence               2222233344456666654 455433 34667788899999999999999988877766666555554444333210


Q ss_pred             Hh-----------hcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhH
Q psy15864        322 QF-----------HLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYY  390 (553)
Q Consensus       322 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~  390 (553)
                      ..           .......+.+.+++..++++++.++...++ .+++.+.+|++.||+++|+.+.+..++..+++.+++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g  391 (1140)
T PRK06814        313 SSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPL-FAALQAWANPAHRARVIAANNVLNAAFMVAGTIILA  391 (1140)
T ss_pred             cccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHH-HHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHH
Confidence            00           000001455666666677777666555555 488899999999999999999999999999999888


Q ss_pred             HHHh
Q psy15864        391 PMLD  394 (553)
Q Consensus       391 ~~~~  394 (553)
                      .+..
T Consensus       392 ~l~~  395 (1140)
T PRK06814        392 LLQA  395 (1140)
T ss_pred             HHHH
Confidence            8764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.69  E-value=4.5e-16  Score=163.29  Aligned_cols=293  Identities=11%  Similarity=0.041  Sum_probs=173.3

Q ss_pred             cccccccccccch--hhhhhhhhcc-CcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHh
Q psy15864         89 KGTFLYKMAAPLV--LVLTYVAEIT-QPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCAL  161 (553)
Q Consensus        89 ~gr~~~G~ga~~~--~~~~~i~e~~-p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~  161 (553)
                      -+|+++|+|++..  ...+.+.+.+ |+++|+++++++.+...+|.++||++++.+    +|||+|++.++++++.+++.
T Consensus        99 ~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~  178 (495)
T PRK14995         99 ATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLT  178 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHH
Confidence            4788999987643  3445565655 779999999999999999999999888776    99999999988877765443


Q ss_pred             -ccccCCceeeeecCChHHHHHHH---------HHHcCCCCCc-chHHHHHHHHHHHH--HHHHHhcCCCCCCChhhhhh
Q psy15864        162 -YFIPESPHWLISQGRMQEASASL---------CWLRGWVTPD-KVQTELSQITKAIE--ESELKRLGKDGQRRPNYRMY  228 (553)
Q Consensus       162 -~~lpEsp~~l~~~~~~~~a~~~l---------~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  228 (553)
                       +++|+.|...  ..+.+.....+         ..+....... ..........-...  ..-...+.........++ +
T Consensus       179 ~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~-l  255 (495)
T PRK14995        179 ARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMR-L  255 (495)
T ss_pred             HHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHH-H
Confidence             4577765311  11111111000         0000000000 00000000000000  000000000011111122 2


Q ss_pred             hhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecc
Q psy15864        229 MRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALIS  306 (553)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~  306 (553)
                      ++++..    ....+..+..........++.|.+++. .|++. +.....+...++.++++++.|++.||+|+|+.+..+
T Consensus       256 f~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g  331 (495)
T PRK14995        256 FTHRII----LSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGG  331 (495)
T ss_pred             hCCccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            222222    222222233333344555677777654 46553 344666778888999999999999999999888777


Q ss_pred             hhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHH
Q psy15864        307 TGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVN  386 (553)
Q Consensus       307 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~  386 (553)
                      +++.+++.+++.....      ..+.+..++..++.|++.+....+.. ..+.+..|++.++.+.++.+.+..+|+.+++
T Consensus       332 ~~~~~~~~~~l~~~~~------~~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~  404 (495)
T PRK14995        332 MALSALSFYGLAMTDF------STQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAGAIETMAYELGAGLGI  404 (495)
T ss_pred             HHHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHHHHHHHHHHHH
Confidence            7776666655443211      23344445566677777666554443 6677889999999999999999999999999


Q ss_pred             HHhHHHHhh
Q psy15864        387 KLYYPMLDT  395 (553)
Q Consensus       387 ~~~~~~~~~  395 (553)
                      .+.+.+.+.
T Consensus       405 ai~g~i~~~  413 (495)
T PRK14995        405 AIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHH
Confidence            998887653

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.69  E-value=4.4e-17  Score=168.97  Aligned_cols=286  Identities=11%  Similarity=0.038  Sum_probs=162.4

Q ss_pred             cccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhcc-
Q psy15864         91 TFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYF-  163 (553)
Q Consensus        91 r~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~-  163 (553)
                      |++.|++.+.  +...+++.++++ ++|+++.++...+..+|..+++.+++.+    |||+.|++.+++.++++++.++ 
T Consensus       115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            5777777653  455577789885 7899999999999999998888877654    9999999999888766544433 


Q ss_pred             ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHH
Q psy15864        164 IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSL  243 (553)
Q Consensus       164 lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (553)
                      .++.+...  ....++ ..   ........+....  ....            ........+. +++++..    +...+
T Consensus       194 ~~~~~~~~--~~~~~~-~~---~~~~~~~~~~~~~--~~~~------------~~~~~~~~~~-~~~~~~~----~~~~~  248 (455)
T TIGR00892       194 RPVGPSQR--VSKSKS-KE---GLPPDGSTKKLSK--KSTA------------EKINRFLDFS-LFTHRGF----LVYLS  248 (455)
T ss_pred             CCCCcccc--cccccc-cc---cCCCCCccccccc--cchh------------hhhhhhcchH-HhcCchH----HHHHH
Confidence            33222100  000000 00   0000000000000  0000            0000000111 2222222    22222


Q ss_pred             HHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhccc--CCcceeecchhHH--HHHHHHHH
Q psy15864        244 FFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYT--GKRPLALISTGGS--AACFIVVA  318 (553)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~--Grr~~l~~~~~~~--~i~~~~~~  318 (553)
                      ..+....+......+++.+..+.+++.. ..+...+.+++.+++.+++|+++||.  ++|+...++..+.  +++.++..
T Consensus       249 ~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~  328 (455)
T TIGR00892       249 GNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA  328 (455)
T ss_pred             HHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222223333444566666666666543 34666677888899999999999974  3333333222222  22222222


Q ss_pred             HHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc-
Q psy15864        319 VYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH-  397 (553)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-  397 (553)
                      .         ..+.+.+++..++.+++.+..... .++++.|.+|++.+++++|+.+.+..++++++|.+.+.+.+..+ 
T Consensus       329 ~---------~~~~~~~~i~~~~~G~~~g~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~  398 (455)
T TIGR00892       329 L---------AGDYTGLVIYCIFFGLSFGSVGAL-LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKN  398 (455)
T ss_pred             H---------hchHHHHHHHHHHHHHHhchHHHH-HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCC
Confidence            1         334555566666777766544433 35788899999999999999999999999999999999888775 


Q ss_pred             chhhHHHHHHHHHHH
Q psy15864        398 LWGTLYFYAAISVVG  412 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~  412 (553)
                      +...+.+.+++.++.
T Consensus       399 ~~~~f~~~~~~~li~  413 (455)
T TIGR00892       399 YKYIFYASGSIVVSA  413 (455)
T ss_pred             cchHHHHhhHHHHHH
Confidence            444555444444333

>PRK10504 putative transporter; Provisional

Probab=99.69  E-value=7e-16  Score=161.29  Aligned_cols=295  Identities=12%  Similarity=0.064  Sum_probs=170.0

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhc
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALY  162 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~  162 (553)
                      -.|+++|++.+  .+...+++.|++|+++|+.+.++...+..+|.++++.+++.+    +||+.|++.++++++..++..
T Consensus       103 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~  182 (471)
T PRK10504        103 LARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATL  182 (471)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            46888888765  456778899999999999999999999999998888887655    999999998887776654443


Q ss_pred             c-ccCCceeeeecCChHHHHHHHH-------H--HcCCCCCcchHHHHHH-HHHHHH--HHHHHhcCCCCCCChhhhhhh
Q psy15864        163 F-IPESPHWLISQGRMQEASASLC-------W--LRGWVTPDKVQTELSQ-ITKAIE--ESELKRLGKDGQRRPNYRMYM  229 (553)
Q Consensus       163 ~-lpEsp~~l~~~~~~~~a~~~l~-------~--~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~  229 (553)
                      . .|+.+.   ...+.+.......       .  ................ ..-...  .................+ ++
T Consensus       183 ~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~  258 (471)
T PRK10504        183 MLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLK-LF  258 (471)
T ss_pred             HhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH-Hh
Confidence            3 554431   1112221111100       0  0010000000000000 000000  000000000111111222 23


Q ss_pred             hhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecch
Q psy15864        230 RRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALIST  307 (553)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~  307 (553)
                      +++.....++..    +....+......+.|.+++. .|.+.. ..+..+...++.+++.++.++++||+|||+++.++.
T Consensus       259 ~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~  334 (471)
T PRK10504        259 RTRTFSLGLAGS----FAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATT  334 (471)
T ss_pred             cccchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            333222222222    22222334444556666653 455432 335555667777888899999999999999988887


Q ss_pred             hHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHH
Q psy15864        308 GGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNK  387 (553)
Q Consensus       308 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~  387 (553)
                      ++.+++.+++.+...      ..+.+...+..++.+++.+....+. ..++.+.+|++.|+.+.|+.++...++..+++.
T Consensus       335 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~  407 (471)
T PRK10504        335 LGLALVSLLFMLVAL------LGWYYLLPFVLFLQGMVNSTRFSSM-NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVT  407 (471)
T ss_pred             HHHHHHHHHHHhccc------cccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHH
Confidence            777776665554210      1222222333444455555554444 377788999999999999999999999999999


Q ss_pred             HhHHHHhhccc
Q psy15864        388 LYYPMLDTFHL  398 (553)
Q Consensus       388 ~~~~~~~~~g~  398 (553)
                      +.+.+.+..++
T Consensus       408 i~g~ll~~~g~  418 (471)
T PRK10504        408 IAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHhhh
Confidence            99988766553

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.68  E-value=5.3e-16  Score=149.85  Aligned_cols=277  Identities=14%  Similarity=0.144  Sum_probs=189.5

Q ss_pred             ccccccccc-cchhhhhhhhhccCcccccchhchhhhhHHHHHHH----HHhhccccc---hHHHHHHHHHHHHHHHHHh
Q psy15864         90 GTFLYKMAA-PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVS----QLFLGSFLH---WRSAAILNLLFPILALCAL  161 (553)
Q Consensus        90 gr~~~G~ga-~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l----~~~l~~~lg---Wr~~f~i~~i~~li~~i~~  161 (553)
                      .+++.|+++ .+.+...+++.|+|++++|.++|+.. ..++|..+    +|++....+   ||....+..++.++..++.
T Consensus       111 ~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~  189 (417)
T COG2223         111 IGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLA  189 (417)
T ss_pred             HHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            356777765 57888999999999999999999998 66666655    455555557   9999998888887765554


Q ss_pred             cc-ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHH
Q psy15864        162 YF-IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIV  240 (553)
Q Consensus       162 ~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (553)
                      ++ +.+.|......+...                                           ...++...    ..+-.|.
T Consensus       190 ~~~~~d~p~~r~~~~~~~-------------------------------------------~~~~~~v~----~~~~~W~  222 (417)
T COG2223         190 WLGMNDVPEHRASVKPQL-------------------------------------------PAQLKAVF----SNKDTWL  222 (417)
T ss_pred             HHHhCCChhhhccccccc-------------------------------------------hhHHHHHh----cCcchHH
Confidence            44 666553211000000                                           00111112    2223455


Q ss_pred             HHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHH
Q psy15864        241 TSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA  318 (553)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  318 (553)
                      .++.++..+.++..+..++|.++.. ++.+.. +........+.+.+..+++|+++||+|.++++++.+..++++..+..
T Consensus       223 lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~  302 (417)
T COG2223         223 LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLS  302 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHH
Confidence            6666777788888888999988864 555433 33666667777888889999999999999999888888888877776


Q ss_pred             HHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        319 VYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                      +......  ...+.+..+...+..+++.+.+-+.+ +-.+..++|.+. |.+.|+...++.+|++..|..++...+..+.
T Consensus       303 ~~~~~~~--~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~~~-G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         303 LFLTGFG--HGGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPKET-GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             ccccccc--cCcchHHHHHHHHHHHHHhccCcchh-eeechHHHHhhh-hHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            5321000  01334444555566666677776666 588888888755 8889999999999999999999999988883


Q ss_pred             -hhhHHHHHHHHHHHHhhheE
Q psy15864        399 -WGTLYFYAAISVVGTLYMYF  418 (553)
Q Consensus       399 -~~~~~~~~~~~~~~~~~~~~  418 (553)
                       ...+.++..+.+++.++.+.
T Consensus       379 ~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         379 YTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence             44555555555555555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.68  E-value=1.3e-15  Score=155.95  Aligned_cols=265  Identities=15%  Similarity=0.045  Sum_probs=160.9

Q ss_pred             cccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHh-
Q psy15864         89 KGTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCAL-  161 (553)
Q Consensus        89 ~gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~-  161 (553)
                      -.|+++|++.+.  ++..+++.|++|+++|++..++...+..+|.++++.++..+    +||++|++.++++++.++.. 
T Consensus       106 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        106 LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLW  185 (406)
T ss_pred             HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            357888877653  56778899999999999999988887777888887776554    89999999888887765544 


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      +++||+++....+.                   .    ..+..                  ..++..++++......+..
T Consensus       186 ~~~~~~~~~~~~~~-------------------~----~~~~~------------------~~~~~~~~~~~~~~~~~~~  224 (406)
T PRK15402        186 RAMPETAGRVGEKL-------------------S----LKELG------------------RDYKLVLKNRRFVAGALAL  224 (406)
T ss_pred             HhCCCCCccccccc-------------------c----HHHHH------------------HHHHHHHcCcHHHHHHHHH
Confidence            44777653210000                   0    00000                  0111222222221111111


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHH-HhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIF-ESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                          +...........+.|.++ +..+.+... .+..+...++.++|.++.++++||+++|+.+.++.++.+++.+++..
T Consensus       225 ----~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~  300 (406)
T PRK15402        225 ----GLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAAL  300 (406)
T ss_pred             ----HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence                111111222333455554 334554332 24444556778899999999999999999888877777666666554


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccch
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW  399 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~  399 (553)
                      .....    ..+.+..++..++.+++.+...... ..... ..+++.||+..++.+....++..+++.+.+.+.+..+++
T Consensus       301 ~~~~~----~~~~~~~~~~~~~~g~g~~~~~~~~-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~  374 (406)
T PRK15402        301 ATVIS----SHAYLWLTAGLSLYAFGIGLANAGL-YRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNG  374 (406)
T ss_pred             HHHcc----cccHHHHHHHHHHHHHHHHHHhhhH-HHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Confidence            32110    1233344455555666554443332 23332 334588999999999999999999999999887776654


Q ss_pred             hhHHH
Q psy15864        400 GTLYF  404 (553)
Q Consensus       400 ~~~~~  404 (553)
                      ...+.
T Consensus       375 ~~~~~  379 (406)
T PRK15402        375 LFNLF  379 (406)
T ss_pred             HHHHH
Confidence            43333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.68  E-value=4.7e-16  Score=157.47  Aligned_cols=277  Identities=10%  Similarity=0.017  Sum_probs=170.7

Q ss_pred             ccccccccccccc-chhhhhhhhhccCcccccchhchhhhhHHHHHH----HHHhhcc------------------ccch
Q psy15864         87 EEKGTFLYKMAAP-LVLVLTYVAEITQPHLRGMLSATASMTTIFGTV----SQLFLGS------------------FLHW  143 (553)
Q Consensus        87 ~~~gr~~~G~ga~-~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~----l~~~l~~------------------~lgW  143 (553)
                      ---.|++.|+++. ++....++++|+|+++||+++|+...+.++|..    ++|.+..                  ..+|
T Consensus       131 lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~  210 (462)
T PRK15034        131 FIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSL  210 (462)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHH
Confidence            3445788888654 556778899999999999999999655555554    4443221                  1248


Q ss_pred             HHHHHHHHHHHHHHHHHhcc-ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy15864        144 RSAAILNLLFPILALCALYF-IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRR  222 (553)
Q Consensus       144 r~~f~i~~i~~li~~i~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (553)
                      |.++++.+++.+++.++.++ +++.|.   .+...                                             
T Consensus       211 ~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~---------------------------------------------  242 (462)
T PRK15034        211 ANAAWIWVPLLAIATIAAWSGMNDIAS---SRASI---------------------------------------------  242 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccc---cccCH---------------------------------------------
Confidence            88888888877776555544 444321   00000                                             


Q ss_pred             hhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcc
Q psy15864        223 PNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRP  301 (553)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~  301 (553)
                      ......++    .+..+.+.+.+++.+.++..+.+++|.+.... ++.. ......+..+...++.+++|+++||+|+++
T Consensus       243 ~~~~~vlk----~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~  317 (462)
T PRK15034        243 ADQLPVLQ----RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR  317 (462)
T ss_pred             HHHHHHhC----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH
Confidence            00011111    12234445555666667777777888887653 3222 222234456777888899999999999999


Q ss_pred             eeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeecccccc-----------------
Q psy15864        302 LALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPN-----------------  364 (553)
Q Consensus       302 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-----------------  364 (553)
                      ++++++++++++.+.+.....   .....+.+...+..++..++.|.+.+++ +-++..++|.                 
T Consensus       318 vl~~~~i~~~i~~~~~~l~lp---~~~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~  393 (462)
T PRK15034        318 VTLINFIFMAIFSALLFLTLP---GTGSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQ  393 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc---cccccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHh
Confidence            998888777666644333221   0001223333333333344444554444 4566677774                 


Q ss_pred             ----chhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchh-hHHHHHHHHHHHHhhheEEc
Q psy15864        365 ----NIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWG-TLYFYAAISVVGTLYMYFVM  420 (553)
Q Consensus       365 ----~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~  420 (553)
                          +.-|.+.|+....+.+|+++.|.+++...+..+.+. .+..+.+..+++.++.|.++
T Consensus       394 ~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        394 REAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence                145778889999999999999999998887766444 45556666666666666544

>KOG0254|consensus

Probab=99.68  E-value=2.9e-16  Score=165.32  Aligned_cols=156  Identities=21%  Similarity=0.094  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhcc
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRL  352 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      .+..+...+++++|++++|+++|++|||.+++++.++..++++++++         +.+.+++++++++.|++.|.....
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~---------a~~~~~l~~GR~l~G~g~G~~~~~  162 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL---------APSWYQLIVGRILTGLGVGGASVL  162 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHhccchhhhhhc
Confidence            58888999999999999999999999999999999999999999998         678899999999999999988877


Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-cchhhHHHHHHHHHHHHhhheEEcccC------CC
Q psy15864        353 LPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF-HLWGTLYFYAAISVVGTLYMYFVMPET------EG  425 (553)
Q Consensus       353 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~pet------~~  425 (553)
                      ++ .|++|+.|++.||...++.+....+|..++ ++.++..... ..|+.++..+.++.+..++.++++||+      ++
T Consensus       163 ~p-iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g  240 (513)
T KOG0254|consen  163 AP-VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG  240 (513)
T ss_pred             ch-hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC
Confidence            76 999999999999999988887777555444 6666665543 135555555555555555558889998      57


Q ss_pred             CChHHHHHHHhccC
Q psy15864        426 RTLRDIEEHFADKG  439 (553)
Q Consensus       426 ~~~~~~~~~~~~~~  439 (553)
                      +..++...+...++
T Consensus       241 ~~~~a~~~l~~l~g  254 (513)
T KOG0254|consen  241 RLEEAKRSLKRLRG  254 (513)
T ss_pred             ChHHHHHHHHHHhC
Confidence            77888888887777

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.68  E-value=2.4e-16  Score=159.59  Aligned_cols=279  Identities=14%  Similarity=0.039  Sum_probs=159.2

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHH-hhccc----cchHHHHHHHHHHHHHHH-HHh
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQL-FLGSF----LHWRSAAILNLLFPILAL-CAL  161 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~-~l~~~----lgWr~~f~i~~i~~li~~-i~~  161 (553)
                      .|++.|++.+  .+...+++.|++|+++|++++++...+..+|.++++ +++..    .+||+.|++.+++.++.. +.+
T Consensus        89 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (379)
T TIGR00881        89 LWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICF  168 (379)
T ss_pred             HHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            5777777654  457778999999999999999999999999999988 34433    289999999888777664 444


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      ++++|+|+....+...+..          .+..+...           ..  ..............+.+.+.    ++..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~----~~~~  221 (379)
T TIGR00881       169 LLLRDSPQSCGLPPAEEMP----------NEEPDGDA-----------EK--KEEELTKKQIFLQYVLLNKV----LWYI  221 (379)
T ss_pred             eeeCCCccccccCccccCc----------cccccccc-----------cc--ccccccchHHHHHHHHhcch----HHHH
Confidence            5577766421100000000          00000000           00  00000000111222222222    2222


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                      .+..+........+..+.|.++.+ .+.+.. ......+..++.+++.+++++++||+.+++.........+...+.+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~  301 (379)
T TIGR00881       222 SLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLV  301 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Confidence            222333333344555666766643 465533 346666778889999999999999864433322222221111111111


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccch
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW  399 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~  399 (553)
                      ...    ....+.+..++..++.+++.. +..+....+++|.+|++.|+++.|+.+.+..+++.++|.+.+.+.+..++.
T Consensus       302 ~~~----~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  376 (379)
T TIGR00881       302 YWL----NPAANPLMDLICLFALGFLVY-GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA  376 (379)
T ss_pred             Hhc----CcchhHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence            110    001122233333344443332 222333467899999999999999999999999999999999999887754


Q ss_pred             h
Q psy15864        400 G  400 (553)
Q Consensus       400 ~  400 (553)
                      .
T Consensus       377 ~  377 (379)
T TIGR00881       377 G  377 (379)
T ss_pred             c
Confidence            3

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.68  E-value=1.3e-15  Score=154.73  Aligned_cols=252  Identities=15%  Similarity=0.172  Sum_probs=155.9

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHh-
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCAL-  161 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~-  161 (553)
                      -.|+++|++.+  .+...+++.|++|+++|+++.++...+..+|.++++.+++.+    +||++|++.+++.++..++. 
T Consensus        98 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (385)
T TIGR00710        98 VLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIF  177 (385)
T ss_pred             HHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            36788888765  356678999999999999999999999999999988887764    89999999888877765444 


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      +++||+++... +.+.                   ....                      ..+....+++..+...+. 
T Consensus       178 ~~~~~~~~~~~-~~~~-------------------~~~~----------------------~~~~~~~~~~~~~~~~~~-  214 (385)
T TIGR00710       178 FILPETLPYEA-RIQI-------------------STYF----------------------ETFLLLLKSKMFWGYALI-  214 (385)
T ss_pred             HhCCCCCCCcc-cCCH-------------------HHHH----------------------HHHHHHHcCchhHHHHHH-
Confidence            44777643110 0000                   0000                      001111222222211111 


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHH-hhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFE-SIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                         .............+.|.++. ..+.+.. ..+......++.+++.++.|++.||+|+|+.+..+.++..++.+++..
T Consensus       215 ---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (385)
T TIGR00710       215 ---YGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI  291 (385)
T ss_pred             ---HHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence               11222223334445565554 4555433 335566677889999999999999999999888777766666655544


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      .....    .......++..++.+++.+..... ...+..|..| +.|+++.++.+.+.+.++.+.+.+.+.+
T Consensus       292 ~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       292 TAILG----LGSWAMIIGPMMFVGIGNSMISSI-AMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             HHHhc----cchHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            32100    112223333344455545444433 3467778776 5789999998888887777777776633

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.68  E-value=5.2e-16  Score=159.72  Aligned_cols=263  Identities=14%  Similarity=0.058  Sum_probs=156.8

Q ss_pred             ccccchhchhhhhHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHhccc-cCCceeeeecCChHHHHHHHHHHcC
Q psy15864        114 HLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILALCALYFI-PESPHWLISQGRMQEASASLCWLRG  189 (553)
Q Consensus       114 ~~Rg~~~~~~~~~~~lG~~l~~~l~~~l---gWr~~f~i~~i~~li~~i~~~~l-pEsp~~l~~~~~~~~a~~~l~~~~~  189 (553)
                      +++|...+....+..+|.++++++++.+   +|+++|++.++++++++++.+++ ++.++-..  .+ ++..        
T Consensus       137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~--------  205 (420)
T PRK09528        137 RRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTAK--VA-NALG--------  205 (420)
T ss_pred             hhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchhh--hc-cchh--------
Confidence            4567777888888888888888777765   89999999988887776666554 44322000  00 0000        


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCC
Q psy15864        190 WVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAP  269 (553)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  269 (553)
                      .+..                         ..........++++..+...+..+...+........+..|+..++...+.+
T Consensus       206 ~~~~-------------------------~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (420)
T PRK09528        206 ANAS-------------------------AVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQG  260 (420)
T ss_pred             cccc-------------------------cccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            0000                         000001111222222222222221111111111112333333333222322


Q ss_pred             CC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhh
Q psy15864        270 LD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHI  348 (553)
Q Consensus       270 ~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (553)
                      .. ..+...+..++.+++.+++|+++||+|+|+.+.++.++.+++.+++.+         ..+.+.+++...+.++..+.
T Consensus       261 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~---------~~~~~~~~~~~~l~g~~~~~  331 (420)
T PRK09528        261 TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF---------ATGPLEVSILKLLHAFEVPF  331 (420)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh---------cccHHHHHHHHHHHHHHHHH
Confidence            22 234555666778899999999999999999988877777776666554         44556666666666655544


Q ss_pred             hhccccceeeccccccchhhhhhhH-HHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEccc
Q psy15864        349 CIRLLPWMLIGEVFPNNIRATASGA-SGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPE  422 (553)
Q Consensus       349 ~~~~~~~~~~~e~~p~~~Rg~~~~~-~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pe  422 (553)
                      ..... ..++.+.+|++.|++..++ .+....+++++++.+.|.+.+..|+...+.+.+++.++..++.++++++
T Consensus       332 ~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        332 LLVGV-FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHH-HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            43333 4788899999999988765 5666889999999999999998887777777777766666555544443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.67  E-value=1.3e-15  Score=160.01  Aligned_cols=293  Identities=14%  Similarity=0.044  Sum_probs=175.8

Q ss_pred             cccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHh
Q psy15864         88 EKGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCAL  161 (553)
Q Consensus        88 ~~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~  161 (553)
                      --+|+++|++.+  .+...+++.|++|+++|+++++++.++..+|.++++.+++++    +||++|++.++++++.+++.
T Consensus        94 ~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~  173 (485)
T TIGR00711        94 IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVA  173 (485)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHH
Confidence            357888888765  356778999999999999999999999999999998887765    99999999988887775544


Q ss_pred             -ccccCCceeeeecCChHHHHHHH--------H-HH-cCCCCCcchHHHHH-HHHHH----HHHHHHHhcCCCCCCChhh
Q psy15864        162 -YFIPESPHWLISQGRMQEASASL--------C-WL-RGWVTPDKVQTELS-QITKA----IEESELKRLGKDGQRRPNY  225 (553)
Q Consensus       162 -~~lpEsp~~l~~~~~~~~a~~~l--------~-~~-~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~  225 (553)
                       +++|++++.  .+.+.+.....+        . .. .............. .....    ........  .........
T Consensus       174 ~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  249 (485)
T TIGR00711       174 FFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL--TDDNPLVDL  249 (485)
T ss_pred             HHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH--cCCCCccCH
Confidence             346765431  111111111100        0 00 01101110000000 00000    00000000  001111112


Q ss_pred             hhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCccee
Q psy15864        226 RMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLA  303 (553)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l  303 (553)
                      + +++++......+    ..+......+...+++|.+++. .|.+.. ..+...+..++.+++.+++|++.||+|||+++
T Consensus       250 ~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~  324 (485)
T TIGR00711       250 R-LFKYRNFTIGCV----YMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLV  324 (485)
T ss_pred             H-HHcCCChHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH
Confidence            2 222222222222    2222233334445667777654 455543 34666677889999999999999999999988


Q ss_pred             ecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHH
Q psy15864        304 LISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAF  383 (553)
Q Consensus       304 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~  383 (553)
                      .++.++.+++.+++.+...     ...+.+..+...++.+++.+....+.. ..+.+.+|++.|+++.|+.+.+..+++.
T Consensus       325 ~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~  398 (485)
T TIGR00711       325 TIGLILYAVGFYWRAFTFT-----PDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQLGGS  398 (485)
T ss_pred             HHHHHHHHHHHHHHhccCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHH
Confidence            8777777666665542110     022334444555666666665555554 5566788999999999999999999999


Q ss_pred             HHHHHhHHHHhh
Q psy15864        384 AVNKLYYPMLDT  395 (553)
Q Consensus       384 i~~~~~~~~~~~  395 (553)
                      +++.+.+.+.++
T Consensus       399 ig~~i~g~~~~~  410 (485)
T TIGR00711       399 IGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.67  E-value=2.1e-15  Score=153.43  Aligned_cols=276  Identities=14%  Similarity=0.027  Sum_probs=162.2

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHhcc
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILALCALYF  163 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l---gWr~~f~i~~i~~li~~i~~~~  163 (553)
                      -.|+++|++.+  .+...+++.|++|+++|++++++..+...+|.++||.+++.+   .|+..+++.++..++.++..++
T Consensus        93 ~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~  172 (393)
T PRK11195         93 LAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLF  172 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35788888765  457778999999999999999999999999999999998877   5666666665554545555566


Q ss_pred             ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHH
Q psy15864        164 IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSL  243 (553)
Q Consensus       164 lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (553)
                      +||+|....... .+. .                ....+..+                  .++.+++++..+..++...+
T Consensus       173 l~~~~~~~~~~~-~~~-~----------------~~~~~~~~------------------~~~~l~~~~~~~~~~~~~~~  216 (393)
T PRK11195        173 IPRLGARRPGQS-WNP-I----------------ALLRDFFH------------------ACRVLWRDKLGRFSLAGTTL  216 (393)
T ss_pred             CCCCcccccccC-CCH-H----------------HHHHHHHH------------------HHHHHHhCchhHHHHHHHHH
Confidence            888764211000 000 0                00000000                  01122333333322222222


Q ss_pred             HHHHhhhhhHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHH
Q psy15864        244 FFIGQFGGMTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQ  322 (553)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  322 (553)
                      .++......+.+..|++..   .+.+. +..+..+..+++.++|+++.+++.|+.++++.+..+++ .++..+++..   
T Consensus       217 ~~~~~~~~~~~~~~~~~~~---lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~---  289 (393)
T PRK11195        217 FWGAGATLRFLVLAWAPVA---LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL---  289 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH---cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH---
Confidence            2222222222222233322   34443 33466677888999999999999999998877665542 2222222222   


Q ss_pred             hhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccch-hhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhh
Q psy15864        323 FHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNI-RATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGT  401 (553)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~  401 (553)
                            ..+.+..++..++.+++.+....+.. +.+.+..|++. +|++.++.+...+++..++..+.+.+ ...+....
T Consensus       290 ------~~~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  361 (393)
T PRK11195        290 ------QHSLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVV  361 (393)
T ss_pred             ------HhHHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHH
Confidence                  22334444555566666555554443 66677766655 79999999999999999998887744 55565444


Q ss_pred             HHHHHHHHHHHHhh
Q psy15864        402 LYFYAAISVVGTLY  415 (553)
Q Consensus       402 ~~~~~~~~~~~~~~  415 (553)
                      +.+.+...++.+.+
T Consensus       362 ~~~~~~~~~~~~~~  375 (393)
T PRK11195        362 AVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44443333333333

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.67  E-value=1.1e-15  Score=177.51  Aligned_cols=256  Identities=17%  Similarity=0.017  Sum_probs=159.6

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-------------chHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-------------HWRSAAILNLLF  153 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-------------gWr~~f~i~~i~  153 (553)
                      -.|+++|++.+  .+...+++.|++|+++|+++++++.++..+|.++|+++++++             +|++.+.+.+++
T Consensus       108 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  187 (1146)
T PRK08633        108 AVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLA  187 (1146)
T ss_pred             HHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Confidence            35777777665  356678999999999999999999999999999988877654             244444444333


Q ss_pred             H-HHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhc
Q psy15864        154 P-ILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRT  232 (553)
Q Consensus       154 ~-li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (553)
                      . ++.+++.+++|++|...........             ...    .....                  ..+..+++.+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~----~~~~~------------------~~~~~l~~~~  232 (1146)
T PRK08633        188 VAVLGLIFAYRLPKVPAAAPEVFDKKK-------------YLF----PKLLW------------------RNLKLLRSDR  232 (1146)
T ss_pred             HHHHHHHHHhcCcCCCCCCcccccccc-------------ccc----HHHHH------------------HHHHHHhcCc
Confidence            3 3334555667887653211100000             000    00000                  1122223333


Q ss_pred             chhHHHHHHHHHHHHhhhhhHHHHhhHHHHHH-hhCCCCC--hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhH
Q psy15864        233 FLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFE-SIHAPLD--PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGG  309 (553)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~  309 (553)
                      ..+..++..++.    +.....+..++|.++. ..+.+..  ..+..++.+++.++|++++++++||++++.++.+++++
T Consensus       233 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~  308 (1146)
T PRK08633        233 VLWLAIIGLSYF----WFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALG  308 (1146)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHH
Confidence            222222222222    2222233344455543 3566544  34666777888999999999999999999888877777


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHh
Q psy15864        310 SAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLY  389 (553)
Q Consensus       310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~  389 (553)
                      ++++.+++.+         ..+.+.++++.++++++.++...+. .+++.+.+|++.||+++|+.+++..+++++++.+.
T Consensus       309 ~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~  378 (1146)
T PRK08633        309 LALSLFLLPT---------APSLASVLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALT  378 (1146)
T ss_pred             HHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            7666665554         3345555666667777666555444 48888999999999999999999888887776665


Q ss_pred             HHHH
Q psy15864        390 YPML  393 (553)
Q Consensus       390 ~~~~  393 (553)
                      +.+.
T Consensus       379 ~~l~  382 (1146)
T PRK08633        379 TLFS  382 (1146)
T ss_pred             HHHH
Confidence            5443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.66  E-value=2.2e-18  Score=179.13  Aligned_cols=155  Identities=19%  Similarity=0.177  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC---CChhHHHHHHHHHHHHhhh
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD---SPLVPTVFLVLAAFLTHIC  349 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  349 (553)
                      .+......++.++|++++|+++||+|||+.++++.++.+++.++.++         ++   +.+.+.+++++.|++.|..
T Consensus        49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~R~~~G~~~g~~  119 (451)
T PF00083_consen   49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAF---------APSYNNFWMLLIGRFLIGFGIGGA  119 (451)
T ss_pred             HHHHHHHHhhhcccccccccccccccccccccccccccccccccccc---------cccccccccccccccccccccccc
Confidence            35667788999999999999999999999999999999999998887         55   7888999999999988877


Q ss_pred             hccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc---chhhHHHHHHHHHHHHhhheEEcccC---
Q psy15864        350 IRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH---LWGTLYFYAAISVVGTLYMYFVMPET---  423 (553)
Q Consensus       350 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~pet---  423 (553)
                      ....+ +|+.|+.|++.|+...++.+....+|..++..+...+ ....   .|+....++.+..+..++..+++|||   
T Consensus       120 ~~~~~-~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~w  197 (451)
T PF00083_consen  120 YVVSP-IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV-SYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRW  197 (451)
T ss_pred             ccccc-ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccce
Confidence            76665 9999999999999988888777766665555443322 2222   25666666666666667777899998   


Q ss_pred             ---CCCChHHHHHHHhcc
Q psy15864        424 ---EGRTLRDIEEHFADK  438 (553)
Q Consensus       424 ---~~~~~~~~~~~~~~~  438 (553)
                         ++|..++.+.+.+.+
T Consensus       198 L~~~~~~~~A~~~l~~~~  215 (451)
T PF00083_consen  198 LLSKGRDEEAEKVLRKLR  215 (451)
T ss_pred             eccccccccccccccccc
Confidence               555555555555533

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.66  E-value=4.1e-15  Score=152.11  Aligned_cols=262  Identities=13%  Similarity=0.051  Sum_probs=149.0

Q ss_pred             hhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhccc-----cchHHHHHHHHHHHHHHHHHhccccCCceeeeecCC
Q psy15864        102 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILALCALYFIPESPHWLISQGR  176 (553)
Q Consensus       102 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~-----lgWr~~f~i~~i~~li~~i~~~~lpEsp~~l~~~~~  176 (553)
                      ...+++.|++|+++|+++.++..+++.+|.++++.++..     .|||.+|++.+++.++.++..+++||+++...   +
T Consensus       114 ~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~---~  190 (402)
T PRK11902        114 VFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPAR---P  190 (402)
T ss_pred             HHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccccc---c
Confidence            444888999999999999999999999999988875543     38999999988887776665666787654210   0


Q ss_pred             hHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHH
Q psy15864        177 MQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQ  256 (553)
Q Consensus       177 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (553)
                      .+...                   +..                  ...+..+++++..+..++..++........   ..
T Consensus       191 ~~~~~-------------------~~~------------------~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~---~~  230 (402)
T PRK11902        191 PRSLG-------------------EAV------------------VGPLRDFFSRRGAWALLLLIVLYKLGDAFA---GS  230 (402)
T ss_pred             cchhH-------------------HHH------------------HHHHHHHHhCcCHHHHHHHHHHHHhHHHHH---HH
Confidence            00000                   000                  011223344444433333322222221111   11


Q ss_pred             hhHHHHHHhhCCCCChH-HHHHHH-HHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChh
Q psy15864        257 TYAVGIFESIHAPLDPY-FATLLL-GVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLV  334 (553)
Q Consensus       257 ~~~~~~~~~~g~~~~~~-~~~~~~-~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  334 (553)
                      ...+.+.+..|.+.... +..... .++.++|.++++++.||+|+|+.+.++.++.++..+.+......     ..+.+.
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-----~~~~~~  305 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-----PKHLWT  305 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcHHH
Confidence            12233334456554332 333233 34678999999999999999988766666555554433322110     122333


Q ss_pred             HHHHHHH----HHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q psy15864        335 PTVFLVL----AAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISV  410 (553)
Q Consensus       335 ~~~~~~~----~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~  410 (553)
                      +++..++    .++..+... +....++.+.+|.+.+    ++...+..+++.+++.+.|.+.+..|+...+.+.+++++
T Consensus       306 ~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~  380 (402)
T PRK11902        306 MALAIGIENLCGGMGTAAFV-ALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIAL  380 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            3333322    222222222 3334677777775544    444445566666667788899999997766666665555


Q ss_pred             HHHhhh
Q psy15864        411 VGTLYM  416 (553)
Q Consensus       411 ~~~~~~  416 (553)
                      +..++.
T Consensus       381 ~~~~~~  386 (402)
T PRK11902        381 PGLALL  386 (402)
T ss_pred             HHHHHH
Confidence            554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.64  E-value=7.1e-15  Score=149.17  Aligned_cols=263  Identities=11%  Similarity=0.025  Sum_probs=171.4

Q ss_pred             cccccccc--cchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhccc
Q psy15864         91 TFLYKMAA--PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYFI  164 (553)
Q Consensus        91 r~~~G~ga--~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~l  164 (553)
                      |+++|.+.  ..++..+++.++  .++|++..+....+.++|.++++++++.+    |||+.|++.++..++.++.. .+
T Consensus       101 ~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~~-~~  177 (382)
T TIGR00902       101 IGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIGF-LI  177 (382)
T ss_pred             HHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-Hc
Confidence            44444432  244555665554  47789999999999999999999887765    99999988766533333333 33


Q ss_pred             cCC-ceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHH
Q psy15864        165 PES-PHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSL  243 (553)
Q Consensus       165 pEs-p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (553)
                      +++ ++.    ++.++.            .                         .........+++++..+...    +
T Consensus       178 ~~~~~~~----~~~~~~------------~-------------------------~~~~~~~~~~l~~~~~~~~l----~  212 (382)
T TIGR00902       178 KPTIPPK----DAIPED------------E-------------------------SQGDSAFIALLKNPMNLRFL----A  212 (382)
T ss_pred             CCCCCCC----cccccc------------c-------------------------cccchhHHHHHcChHHHHHH----H
Confidence            333 210    000000            0                         00001112222332222222    2


Q ss_pred             HHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHH
Q psy15864        244 FFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQ  322 (553)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  322 (553)
                      ..+...........+.|.++++.|.+... .....+..++.+++.++++++.||+|.|+++.++.++..+.++++.+   
T Consensus       213 ~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~---  289 (382)
T TIGR00902       213 AVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA---  289 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh---
Confidence            22223333444555667777777776543 35555677888889999999999999999999998888888877765   


Q ss_pred             hhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHH-HHHHHHHHHHHHhHHHHhhccchhh
Q psy15864        323 FHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGS-SSYIFAFAVNKLYYPMLDTFHLWGT  401 (553)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~-~~~~~~~i~~~~~~~~~~~~g~~~~  401 (553)
                            .++.+.+++..++.++.++....+. ..|+.+. |++.|+++.++.+. ...++..+++.+.|.+.+..+. ..
T Consensus       290 ------~~~~~~~~~~q~l~g~~~~~~~~~~-~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~  360 (382)
T TIGR00902       290 ------IEAFPLIFLLQILHCGTFAVCHLAA-MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GT  360 (382)
T ss_pred             ------HhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HH
Confidence                  4566777778888888887777665 4888887 99999999998764 4668899999999999998874 55


Q ss_pred             HHHHHHHHHHHH
Q psy15864        402 LYFYAAISVVGT  413 (553)
Q Consensus       402 ~~~~~~~~~~~~  413 (553)
                      +++.+++.++..
T Consensus       361 ~~~~~~~~~~~~  372 (382)
T TIGR00902       361 FVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHH
Confidence            655555555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.64  E-value=3.1e-15  Score=152.60  Aligned_cols=249  Identities=12%  Similarity=0.036  Sum_probs=150.3

Q ss_pred             cccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHH-hc
Q psy15864         89 KGTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILALCA-LY  162 (553)
Q Consensus        89 ~gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l---gWr~~f~i~~i~~li~~i~-~~  162 (553)
                      -.|+++|++.+.  +...+++.+++|+++|++++++...+..+|..+|+.+++.+   +||++|++.+++.++..++ .+
T Consensus       104 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~  183 (400)
T PRK11646        104 LSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAW  183 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            357777876643  45668899999999999999999999999999998887766   9999999988777665433 34


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      ++||.+.     .+..               .+.       .                  ..++..++.+......+.. 
T Consensus       184 ~~~~~~~-----~~~~---------------~~~-------~------------------~~~~~~~~~~~~~~~~~~~-  217 (400)
T PRK11646        184 LLPAYKL-----STVR---------------TPV-------R------------------EGMTRVLRDKRFVTYVLTL-  217 (400)
T ss_pred             hCCcccc-----cccc---------------hhh-------H------------------HHHHHHHcCchHHHHHHHH-
Confidence            4565210     0000               000       0                  0111122222111111111 


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhh-cccCCcceeecchhHHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLI-HYTGKRPLALISTGGSAACFIVVAVY  320 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~-dr~Grr~~l~~~~~~~~i~~~~~~~~  320 (553)
                         +..+........+.|.+.++.+.+. ...+...+.+++.+++....+++. ||++.++.+..++++.+++.+++.. 
T Consensus       218 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~-  293 (400)
T PRK11646        218 ---TGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGM-  293 (400)
T ss_pred             ---HHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-
Confidence               1111111223345666666544332 233444445555554444445555 4566555555665555555554443 


Q ss_pred             HHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc
Q psy15864        321 AQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF  396 (553)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~  396 (553)
                              .++.+.+++..++++.+.+... +...+++.+.+|++.||++.|+.+....+++.++|.+.|.+.+..
T Consensus       294 --------~~~~~~~~~~~~l~~~g~~~~~-p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        294 --------VSNLQQLFTLICLFYIGSIIAE-PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             --------hhhHHHHHHHHHHHHHHHHHHH-ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence                    3334444444445555444333 333478889999999999999999999999999999999998764

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.63  E-value=2.6e-16  Score=157.72  Aligned_cols=252  Identities=20%  Similarity=0.223  Sum_probs=161.7

Q ss_pred             ccccccccc--cchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHH-hc
Q psy15864         90 GTFLYKMAA--PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCA-LY  162 (553)
Q Consensus        90 gr~~~G~ga--~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~-~~  162 (553)
                      .|++.|++.  ..+...+++.|++|+++|++++++...+..+|.++++.+++.+    +||++|++.+++.++.+++ .+
T Consensus        91 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~  170 (352)
T PF07690_consen   91 ARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFIL  170 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHC
T ss_pred             hccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhh
Confidence            577888875  3557779999999999999999999999999999999888766    8999999999999888664 34


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      ++++++.....+.+.++                .           ....       ......++.+++++..+..++.  
T Consensus       171 ~~~~~~~~~~~~~~~~~----------------~-----------~~~~-------~~~~~~~~~~~~~~~~~~~~~~--  214 (352)
T PF07690_consen  171 FLPEPPPPRERESPKES----------------E-----------SKKP-------KPLKPGFKSLFKNPVLWILLIA--  214 (352)
T ss_dssp             CC---STTTT--SSTTT----------------T-------------HH-------HCCCH-CTHHHHHHCCHHHHHH--
T ss_pred             hhhhccccccccccccc----------------c-----------cccc-------cccccccccccccchhhhhhhh--
Confidence            45444321100000000                0           0000       0000113334444433212222  


Q ss_pred             HHHHHhhhhhHHHHhhHHHH-HHhhCCC--CChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGI-FESIHAP--LDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~--~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                        .+...........+.|.+ .+..+.+  .+......+..++.+++.++.|+++||+++++.+.+......++.+.+.+
T Consensus       215 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (352)
T PF07690_consen  215 --FFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLL  292 (352)
T ss_dssp             --HHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             --hhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence              222222334456666765 4455655  22335566777888888999999999999987777666666555555443


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHH
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVN  386 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~  386 (553)
                      ...      ..+....++..++.+++.+... +...+++.+.+|++.||++.|+.+.+..+++.++|
T Consensus       293 ~~~------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  293 LPF------SSSPVWLIIALFLIGFGFGIVF-PILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             SHH------HCHHHHHHHHHHHHHHHHHHHC-HHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH------hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            221      2233444555666677665554 44458999999999999999999999999998886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.62  E-value=6.1e-15  Score=148.31  Aligned_cols=234  Identities=12%  Similarity=0.033  Sum_probs=143.0

Q ss_pred             hhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----c--------hHHHHHHHHHHHHHHHHHhcc-ccCCce
Q psy15864        103 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----H--------WRSAAILNLLFPILALCALYF-IPESPH  169 (553)
Q Consensus       103 ~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----g--------Wr~~f~i~~i~~li~~i~~~~-lpEsp~  169 (553)
                      ..+++.|++|+++|+++.++..++..+|.++++.++..+    +        ||++|++.+++.++.++..++ .||+.+
T Consensus       104 ~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~  183 (356)
T TIGR00901       104 LDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQE  183 (356)
T ss_pred             HHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            347899999999999999999999999999988887544    6        999999999888777665554 577532


Q ss_pred             eeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhh
Q psy15864        170 WLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQF  249 (553)
Q Consensus       170 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (553)
                      ..   ...++                   ......                  ..++.+++++..++.+..... .+...
T Consensus       184 ~~---~~~~~-------------------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~  222 (356)
T TIGR00901       184 DA---SVPKP-------------------LTQAVL------------------KPIREFFQRKNMIQALLLLLL-IVLYK  222 (356)
T ss_pred             cc---ccchh-------------------HHHHHH------------------HHHHHHHHhcCchHHHHHHHH-HHHHH
Confidence            10   00000                   000000                  112222333221122222222 22223


Q ss_pred             hhhHHHHhhHHHHHHhhCCCCChH-HHHHHHH-HHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcc-
Q psy15864        250 GGMTTLQTYAVGIFESIHAPLDPY-FATLLLG-VAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLS-  326 (553)
Q Consensus       250 ~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~-i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~-  326 (553)
                      ........+.|.++.+.|++.... ....+.+ ++.++|.+++|+++||+|||+.+++++++.+++..++.+....... 
T Consensus       223 ~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
T TIGR00901       223 LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD  302 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            334445556666666666654332 3333333 5678999999999999999988887777766665544432210000 


Q ss_pred             -cCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHH
Q psy15864        327 -YGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSS  378 (553)
Q Consensus       327 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~  378 (553)
                       ....+.+.++...++.+++.+....+. .+++.|.+|++.||+.+|+.+.+.
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       303 GITFPHLLMLFLTITLEAVTGGLGTVAF-VAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhcCCCccHHHHHHHHHHH
Confidence             000223444555555566666565555 499999999999999999877654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.61  E-value=1.1e-14  Score=147.61  Aligned_cols=247  Identities=17%  Similarity=0.121  Sum_probs=141.6

Q ss_pred             cccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHH-Hh
Q psy15864         89 KGTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALC-AL  161 (553)
Q Consensus        89 ~gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i-~~  161 (553)
                      -.|+++|++.+.  +...+++.|++|+++|++++++...+..+|.+++++++..+    +||++|++.++++++..+ ..
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            457778877653  45668899999999999999999999999999998887655    999999998888777644 44


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      +++||+++-.   .+.               ........                      ..+...++.+..    +..
T Consensus       164 ~~~~~~~~~~---~~~---------------~~~~~~~~----------------------~~~~~~~~~~~~----~~~  199 (377)
T PRK11102        164 FFIPETLPKE---RRQ---------------PFHLRTTI----------------------RNFASLFRHKRV----LGY  199 (377)
T ss_pred             HhCCccCccc---ccC---------------CCChHHHH----------------------HHHHHHHcChHH----HHH
Confidence            5577764210   000               00000000                      011111212111    111


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHH-HhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIF-ESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                      .+..+..+.+......+.|.++ +..+.+.. ..+...+..++.+++.++++++.||+|||+.+.++.++..+..+.+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~  279 (377)
T PRK11102        200 MLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVV  279 (377)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            1112222223333334444444 33465433 345666777889999999999999999999888777655444333322


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHH-HHHHHHH
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSY-IFAFAVN  386 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~-~~~~i~~  386 (553)
                      ....     ....+...+...+.+.+.+..... ...++.|..| +.++++.++.+.... +++.+++
T Consensus       280 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~  340 (377)
T PRK11102        280 SALL-----DLGFWALVVGVAAFVGCVSMISSN-AMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGA  340 (377)
T ss_pred             HHHH-----hhhHHHHHHHHHHHHHHHHHhhHH-HHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHH
Confidence            2110     112233333333333323222222 2355667766 788999988776654 3334444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.61  E-value=1.9e-14  Score=147.54  Aligned_cols=165  Identities=12%  Similarity=0.047  Sum_probs=114.7

Q ss_pred             HhhHHHHHHhhCCCC---------ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcc
Q psy15864        256 QTYAVGIFESIHAPL---------DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLS  326 (553)
Q Consensus       256 ~~~~~~~~~~~g~~~---------~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~  326 (553)
                      ..+.+.++++.+.+.         .......+..++.+++.++.|+++||+|||+++.++.++.+++++++.....    
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~----  303 (418)
T TIGR00889       228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDP----  303 (418)
T ss_pred             HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc----
Confidence            345555555555332         2245556667788889999999999999999998888877777655544100    


Q ss_pred             cCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHH-HHHHHHHHHHHHHhHHHHhhcc------ch
Q psy15864        327 YGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASG-SSSYIFAFAVNKLYYPMLDTFH------LW  399 (553)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~-~~~~~~~~i~~~~~~~~~~~~g------~~  399 (553)
                       .....+.+++..++.+++.+...... ..+++|.+|++.|+++.|+.+ ....++++++|.+.|.+.+..+      |.
T Consensus       304 -~~~~~~~l~l~~~l~g~~~~~~~~~~-~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~  381 (418)
T TIGR00889       304 -EYFGYALLFLSMIVYGCAFDFFNISG-SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ  381 (418)
T ss_pred             -chhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence             00012334455666666655444333 478899999999999999997 5577899999999999988743      44


Q ss_pred             hhHHHHHHHHHHHHhhheEEcccCCCC
Q psy15864        400 GTLYFYAAISVVGTLYMYFVMPETEGR  426 (553)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~pet~~~  426 (553)
                      ..+.+.+++.++.+++.++++||+.+.
T Consensus       382 ~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       382 TMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            556666677777777777888887543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.61  E-value=1.3e-14  Score=148.06  Aligned_cols=250  Identities=17%  Similarity=0.128  Sum_probs=143.4

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHH-h
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCA-L  161 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~-~  161 (553)
                      -.|+++|++..  .+...+++.|++|+++|+++.++......+|.+++++++..+    +||+.|++.+++++++.++ .
T Consensus        96 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473         96 AGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence            46788888765  346778999999999999999999998888888888776654    8999999998887776544 4


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      +++||++...  +.+.                ...   .+                     .....+.++.+....+ ..
T Consensus       176 ~~~~~~~~~~--~~~~----------------~~~---~~---------------------~~~~~~~~~~~~~~~~-~~  212 (392)
T PRK10473        176 FILKETRPAR--APAA----------------SSK---PR---------------------ENSESLLNRFFLSRLV-IT  212 (392)
T ss_pred             HHcCCCCCcc--cCCc----------------cch---HH---------------------HHHHHHhCHHHHHHHH-HH
Confidence            4577764210  0000                000   00                     0001111111111111 11


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHH-HhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIF-ESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                      .+...    ....+..+.|.++ ...|++... .......+++.+++.++.+++.||+|||+.+.+++++..++.+++.+
T Consensus       213 ~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~  288 (392)
T PRK10473        213 TLSVT----VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL  288 (392)
T ss_pred             HHHHH----HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            11111    1112223334443 344655433 34556678888999999999999999999888887777766666554


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccch
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW  399 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~  399 (553)
                      ..         ..+..++...+.+.+.+.++..   .+..++.|.+.|+   +.......++..+++.+.+.+.+..++.
T Consensus       289 ~~---------~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~  353 (392)
T PRK10473        289 SP---------SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGIS  353 (392)
T ss_pred             HH---------HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            22         1222233333333333333221   2334455554443   3333444556666677777777666644


Q ss_pred             h
Q psy15864        400 G  400 (553)
Q Consensus       400 ~  400 (553)
                      .
T Consensus       354 ~  354 (392)
T PRK10473        354 A  354 (392)
T ss_pred             h
Confidence            3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.60  E-value=9.1e-15  Score=156.91  Aligned_cols=191  Identities=12%  Similarity=0.047  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHH
Q psy15864        238 AIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIV  316 (553)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  316 (553)
                      ++++++..+........+...+|.+....+.+.. ..+..++..++.++|++++|+++||+|||+++++++++.+++.++
T Consensus       169 ~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll  248 (742)
T TIGR01299       169 FFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFF  248 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            3333333333333344556667777677776543 346777888999999999999999999999999988888887777


Q ss_pred             HHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc
Q psy15864        317 VAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF  396 (553)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~  396 (553)
                      .++         ..+.+.+++++++.|++.+... ++.+++++|++|++.||..+++...+..+|+++++.+...+....
T Consensus       249 ~af---------a~s~~~llv~R~l~G~g~g~~~-p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~  318 (742)
T TIGR01299       249 SSF---------VQGYGFFLFCRLLSGFGIGGAI-PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY  318 (742)
T ss_pred             HHH---------HhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            665         4567788888999999887766 455699999999999999999999988898888887766555433


Q ss_pred             c------------chhhHHHHHHHHHHHHhhheEEcccC------CCCChHHHHHHHhcc
Q psy15864        397 H------------LWGTLYFYAAISVVGTLYMYFVMPET------EGRTLRDIEEHFADK  438 (553)
Q Consensus       397 g------------~~~~~~~~~~~~~~~~~~~~~~~pet------~~~~~~~~~~~~~~~  438 (553)
                      +            .|+.++++++++.+++++.++++||+      +++..++.+.+.+..
T Consensus       319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~  378 (742)
T TIGR01299       319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIH  378 (742)
T ss_pred             cchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHh
Confidence            2            24555566666666667777889998      455555555554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.60  E-value=7e-15  Score=152.25  Aligned_cols=241  Identities=15%  Similarity=0.108  Sum_probs=143.3

Q ss_pred             hhhhhcc-CcccccchhchhhhhHHHHHHHHHhhcc-----------ccchHHHHHHHHHHHHHHHHHh-ccccCCceee
Q psy15864        105 TYVAEIT-QPHLRGMLSATASMTTIFGTVSQLFLGS-----------FLHWRSAAILNLLFPILALCAL-YFIPESPHWL  171 (553)
Q Consensus       105 ~~i~e~~-p~~~Rg~~~~~~~~~~~lG~~l~~~l~~-----------~lgWr~~f~i~~i~~li~~i~~-~~lpEsp~~l  171 (553)
                      ++..|++ ++++|++..++...+..+|.++++.+..           ..+||+++++.+++++++.++. ++++|.+...
T Consensus       122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~  201 (437)
T TIGR00792       122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEI  201 (437)
T ss_pred             hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCC
Confidence            5567877 4689999999988887777665443321           2389999999998887775544 5577764210


Q ss_pred             eecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhh
Q psy15864        172 ISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGG  251 (553)
Q Consensus       172 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (553)
                      .   ..++            ....                         ....++.+++++..+..++..++.    ...
T Consensus       202 ~---~~~~------------~~~~-------------------------~~~~~~~l~~~~~~~~~~~~~~~~----~~~  237 (437)
T TIGR00792       202 P---KNIE------------KKLS-------------------------LKQIFKALFKNDQLLILCLAYLFY----NLA  237 (437)
T ss_pred             C---cccc------------cCCC-------------------------HHHHHHHHhCCHHHHHHHHHHHHH----HHH
Confidence            0   0000            0000                         001122222222222222222222    222


Q ss_pred             hHHHHhhHHHHHHh-hCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        252 MTTLQTYAVGIFES-IHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       252 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      ......+.+.+.+. .+.+....+...+..++.+++.++.++++||+|+|+++.++.++.+++.+++.+.        ..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--------~~  309 (437)
T TIGR00792       238 FNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA--------GS  309 (437)
T ss_pred             HHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--------ch
Confidence            22222222332221 1212223345556678899999999999999999999888877777666555431        12


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccc-------cchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFP-------NNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                      +.+..++..++.+++.+... +..+++++|+.+       ++.+|+..|+.+++..+++.+++.+.+.+.+..|+
T Consensus       310 ~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       310 NLPLILVLIILAGFGQNFVT-GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            33444445555555554443 444577788765       45679999999999999999999999998876554

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.60  E-value=4e-14  Score=143.76  Aligned_cols=262  Identities=11%  Similarity=0.021  Sum_probs=158.3

Q ss_pred             ccccccccc--cchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhcc
Q psy15864         90 GTFLYKMAA--PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYF  163 (553)
Q Consensus        90 gr~~~G~ga--~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~  163 (553)
                      .|+++|++.  ..+.+.+++.++  .++|++..+...++..+|.+++|++++.+    |||.+|++.++..++.++..++
T Consensus       100 ~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~  177 (382)
T PRK11128        100 AIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLL  177 (382)
T ss_pred             HHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHc
Confidence            456666533  344555666666  35688888888888888888888888765    9999999887655555444444


Q ss_pred             ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHH
Q psy15864        164 IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSL  243 (553)
Q Consensus       164 lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (553)
                      .||.++.    .+.++.                                     .......+..+++++..+..++..++
T Consensus       178 ~~~~~~~----~~~~~~-------------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~l  216 (382)
T PRK11128        178 RPTIMPQ----GESRQQ-------------------------------------ESAGWPAWKALLKEPTVWRFLLCVSL  216 (382)
T ss_pred             cCCCCCc----cccccc-------------------------------------cccccchHHHHHcChhHHHHHHHHHH
Confidence            5554210    000000                                     00000122333333333222222222


Q ss_pred             HHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHH
Q psy15864        244 FFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQ  322 (553)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  322 (553)
                      ..    ........+.+.+..+.|.+... .....+..++.+++.++.+++.||+|+|+.+.+++++.+++.+++..   
T Consensus       217 ~~----~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~---  289 (382)
T PRK11128        217 LQ----GSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS---  289 (382)
T ss_pred             HH----HHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh---
Confidence            22    22223334455555666665433 34445566778888899999999999999988887777776655543   


Q ss_pred             hhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHH-HHHHHHHHHHHhHHHHhhccchhh
Q psy15864        323 FHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSS-SYIFAFAVNKLYYPMLDTFHLWGT  401 (553)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~-~~~~~~i~~~~~~~~~~~~g~~~~  401 (553)
                            .++.+.+++..++.+++.+...... ..++.+. ++..+++..++.+.. ..++..++|.+.|.+.+..+. ..
T Consensus       290 ------~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~  360 (382)
T PRK11128        290 ------TTALPWLIVIQILHCGTFTVCHLAA-MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GV  360 (382)
T ss_pred             ------hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HH
Confidence                  4456666677777777766554444 3666776 455568888877644 456668999999999998875 34


Q ss_pred             HHHHHHHHH
Q psy15864        402 LYFYAAISV  410 (553)
Q Consensus       402 ~~~~~~~~~  410 (553)
                      ++..+++.+
T Consensus       361 ~~~~~~~~~  369 (382)
T PRK11128        361 FWVMALVAL  369 (382)
T ss_pred             HHHHHHHHH
Confidence            444444433

>KOG1330|consensus

Probab=99.59  E-value=1.1e-15  Score=148.86  Aligned_cols=268  Identities=12%  Similarity=0.016  Sum_probs=150.2

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----chHHHHHHHHHHHHHHHHHh-
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILALCAL-  161 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----gWr~~f~i~~i~~li~~i~~-  161 (553)
                      .|-+.|+|-+  .++++++++|.+|..+|++++++++++..+|..+|.+++..+     .|||.|++.+++++++.++. 
T Consensus       127 ~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~  206 (493)
T KOG1330|consen  127 CRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVF  206 (493)
T ss_pred             HHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHH
Confidence            3556677643  568889999999999999999999999999999999888876     49999999999999886555 


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhh---hhh-hcchhHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRM---YMR-RTFLLPY  237 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~  237 (553)
                      ++++|++|=     ..++..       +.+.                        ........+++   +.+ +.+..+.
T Consensus       207 ~f~~eP~rg-----a~~~~~-------~~~~------------------------~~~~~ts~~kDl~~l~~~~v~v~~s  250 (493)
T KOG1330|consen  207 LFVREPERG-----ARDEVD-------GENK------------------------MVKPFTSVWKDLKVLAKIKVFVLSS  250 (493)
T ss_pred             hhccCcccc-----cccccc-------cCCc------------------------CCCCccchHHHHHHHHccCceeeeh
Confidence            557776531     101000       0000                        00001112222   222 1111111


Q ss_pred             HHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCc----ceeecchhHHHH
Q psy15864        238 AIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKR----PLALISTGGSAA  312 (553)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr----~~l~~~~~~~~i  312 (553)
                       +......+...+..++.+.+.+..+...+.+.+. .+...+..+++.+|.+++|.++|++-|+    ....+.-+..+.
T Consensus       251 -l~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~  329 (493)
T KOG1330|consen  251 -LGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAAL  329 (493)
T ss_pred             -HHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhh
Confidence             2222222222222333334444444445544443 4666778889999999999999995432    222222222221


Q ss_pred             HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHH-HhhhhccccceeeccccccchhhhhhhHHHHHHHHHH-HHHHHHhH
Q psy15864        313 CFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFL-THICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFA-FAVNKLYY  390 (553)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~-~i~~~~~~  390 (553)
                      +..+...+..........+.+..++ +++++.. ....+.+. .-...|+.|++.|.++.++...+..+.+ +-+|++.|
T Consensus       330 g~~~s~~~L~~~~~~~~~s~~~~~i-l~~~g~~~~~~~~a~n-~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivG  407 (493)
T KOG1330|consen  330 GAPLSIPFLFLFPAFTSSSMIFGLI-LFLVGETISWFNWATN-NPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVG  407 (493)
T ss_pred             hhhHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHhcccccc-cceeeEecCcccccHHHHHHHHHHHHhccCCCcceeh
Confidence            1111111110000001222222222 3333333 22333333 3566899999999999999887766555 44555888


Q ss_pred             HHHhhc
Q psy15864        391 PMLDTF  396 (553)
Q Consensus       391 ~~~~~~  396 (553)
                      .+.+..
T Consensus       408 ilsd~l  413 (493)
T KOG1330|consen  408 ILSDKL  413 (493)
T ss_pred             hHHHHh
Confidence            887664

>TIGR00896 CynX cyanate transporter

Probab=99.59  E-value=1.9e-14  Score=144.67  Aligned_cols=249  Identities=19%  Similarity=0.122  Sum_probs=150.6

Q ss_pred             ccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc------chHHHHHHHHHHHHHHHHHh
Q psy15864         90 GTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL------HWRSAAILNLLFPILALCAL  161 (553)
Q Consensus        90 gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l------gWr~~f~i~~i~~li~~i~~  161 (553)
                      .|+++|++.+.  +..+.++.+++| ++|+++++++..+..+|..+++.++..+      +||+.|.+.+++.++.++  
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--  169 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--  169 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence            46777776543  355677888886 6899999999999999988887776544      399999877665544332  


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      .++|+.++.    .+.+             ..                          .........++++..    +..
T Consensus       170 ~~~~~~~~~----~~~~-------------~~--------------------------~~~~~~~~~~~~~~~----~~~  202 (355)
T TIGR00896       170 AWIPQVRRR----VAAN-------------QT--------------------------TTRLTPVRIWRSPLA----WQV  202 (355)
T ss_pred             HHhhhhccc----cCCC-------------CC--------------------------CCCCCCchhhcCHhH----HHH
Confidence            234443210    0000             00                          000011112222211    112


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccC-CcceeecchhHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTG-KRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~G-rr~~l~~~~~~~~i~~~~~~~  319 (553)
                      .+..+.....+.....|+|.++++.+.+.. .....++..++.++++++.|+++||++ ||..+.++.++.+++.+++.+
T Consensus       203 ~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  282 (355)
T TIGR00896       203 TVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF  282 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            222223333344555677888776666543 346667788999999999999999994 565666666666666555543


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeecc-ccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGE-VFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                      .         .+.... ....+++++.+..+... ...+.+ ..+++.++...++.+.+++++++++|.+.+.+.+..+.
T Consensus       283 ~---------~~~~~~-~~~~l~g~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       283 A---------PMHGLW-AWALVLGLGQGGAFPLA-LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             h---------hhhHHH-HHHHHHHHhhhhHhHHH-HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2         111222 13344555554443222 244443 34567778889999999999999999999999988764


Q ss_pred             h
Q psy15864        399 W  399 (553)
Q Consensus       399 ~  399 (553)
                      +
T Consensus       352 ~  352 (355)
T TIGR00896       352 W  352 (355)
T ss_pred             c
Confidence            4

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11043 putative transporter; Provisional

Probab=99.59  E-value=4.9e-14  Score=144.17  Aligned_cols=251  Identities=12%  Similarity=0.070  Sum_probs=150.9

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhcc
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYF  163 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~  163 (553)
                      .|+++|++..  .+...+++.|++|++++++..+.......+|.++++.+++.+    +||++|++.+++.++..++.++
T Consensus       100 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        100 LRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            5788887654  334457889999999999888888877777777777776654    9999999998888777666655


Q ss_pred             ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHH
Q psy15864        164 IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSL  243 (553)
Q Consensus       164 lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (553)
                      ++++++.    .+.++..                                         ..++.+.+++..+..++..  
T Consensus       180 ~~~~~~~----~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~--  212 (401)
T PRK11043        180 LKPSKKA----RKQSQDA-----------------------------------------LTFKQLLKSKTYLGNVLIF--  212 (401)
T ss_pred             cCCCCCc----cccchHH-----------------------------------------HHHHHHHcChhHHHHHHHH--
Confidence            6554321    0000000                                         0111112221111111111  


Q ss_pred             HHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHH
Q psy15864        244 FFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQ  322 (553)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  322 (553)
                        ............+.|.+++..+.+... .+......++.++|.++.+++.||+|+|+.+....++.+++.+.+.....
T Consensus       213 --~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (401)
T PRK11043        213 --AACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASL  290 (401)
T ss_pred             --HHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              111122233445667776666665432 34445566788889999999999999988765555544444433322211


Q ss_pred             hhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        323 FHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      ..    ....+..++...+.+++.+... +....+..+..| +.||++.|+.+.+...++.+++.+.+.+.+.
T Consensus       291 ~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        291 LS----HPSLVPLLIPFCVMAAANGAIY-PIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             hc----cCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            00    2223333334444555544444 333355566666 5789999999999888889999888887664

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.58  E-value=3.6e-14  Score=144.01  Aligned_cols=261  Identities=13%  Similarity=-0.052  Sum_probs=155.3

Q ss_pred             cccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHH-HHhc
Q psy15864         89 KGTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILAL-CALY  162 (553)
Q Consensus        89 ~gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l---gWr~~f~i~~i~~li~~-i~~~  162 (553)
                      -.|+++|++.+.  +...+++.+..++++|+++++++..+..+|..+++.++..+   .++..++..++..+..+ ++..
T Consensus        99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  178 (381)
T PRK03633         99 AWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAILPLLFT  178 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHh
Confidence            357888887653  34456778889999999999999999999999999988776   12222333222222222 2221


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      ..++++.     .+ +                                         . .......++++..+..+..+ 
T Consensus       179 ~~~~~~~-----~~-~-----------------------------------------~-~~~~~~~~~~~~~~~~~~~~-  209 (381)
T PRK03633        179 RILNQQA-----EN-H-----------------------------------------D-STSIWPMLKLRQARLGVNGC-  209 (381)
T ss_pred             cccCCCC-----CC-C-----------------------------------------C-CCCHHHHHHhcchHHHHHHH-
Confidence            2222110     00 0                                         0 00011111121111111111 


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYA  321 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~  321 (553)
                         +...........++|.+++..+.+... .+...+..++.+++.++.|+++||+|+|+++..+..+.+++.+.+..  
T Consensus       210 ---~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~--  284 (381)
T PRK03633        210 ---IISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS--  284 (381)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh--
Confidence               111112233345567777666665433 35566777888999999999999999998887776666655543321  


Q ss_pred             HhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhh
Q psy15864        322 QFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGT  401 (553)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~  401 (553)
                                ....+...++.+++.. ...+...+++.|..|++.++...+..+....+|+.++|.+.|.+.+..++...
T Consensus       285 ----------~~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~  353 (381)
T PRK03633        285 ----------QAAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLL  353 (381)
T ss_pred             ----------hHHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence                      1112223334443332 33344457778989888878778887788889999999999999998887766


Q ss_pred             HHHHHHHHHHHHh
Q psy15864        402 LYFYAAISVVGTL  414 (553)
Q Consensus       402 ~~~~~~~~~~~~~  414 (553)
                      +.+.+++.++..+
T Consensus       354 f~~~~~~~l~~~~  366 (381)
T PRK03633        354 FIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666555554443

>PRK10054 putative transporter; Provisional

Probab=99.58  E-value=1.3e-14  Score=147.72  Aligned_cols=263  Identities=13%  Similarity=0.032  Sum_probs=157.5

Q ss_pred             hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHh-ccccCCceeeeecCC
Q psy15864        101 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILALCAL-YFIPESPHWLISQGR  176 (553)
Q Consensus       101 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l---gWr~~f~i~~i~~li~~i~~-~~lpEsp~~l~~~~~  176 (553)
                      ++..+++.|.+|+++|+++.++...+.++|.++++++++.+   +||.+|++.+++.++.+++. +++|++++-    ++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~----~~  190 (395)
T PRK10054        115 TVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKA----IA  190 (395)
T ss_pred             HHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccccc----cc
Confidence            34567789999999999999999999999999999888776   89999999888877765444 346654310    00


Q ss_pred             hHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHH
Q psy15864        177 MQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQ  256 (553)
Q Consensus       177 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (553)
                      .++ .                ..                       ...+..++++..+...+..++..+..........
T Consensus       191 ~~~-~----------------~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  230 (395)
T PRK10054        191 TET-G----------------SV-----------------------WSPSVLLQDKALLWFTCSGFLASFVSGAFASCIS  230 (395)
T ss_pred             cch-h----------------hh-----------------------hhhhhhccCceehHHHHHHHHHHHHHHHhhhhHH
Confidence            000 0                00                       0001122222222222222222222111112222


Q ss_pred             hhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhH
Q psy15864        257 TYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVP  335 (553)
Q Consensus       257 ~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  335 (553)
                      .|.+.. ...+.+... .......++..++..+..|++.||.++|+.+.+++++.+++.+++.+.        ..+.+.+
T Consensus       231 ~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~  301 (395)
T PRK10054        231 QYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS--------GNSLLLW  301 (395)
T ss_pred             HHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc--------chHHHHH
Confidence            332222 112221111 233333444455556778899999999998887777776666555431        1233444


Q ss_pred             HHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhh
Q psy15864        336 TVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLY  415 (553)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  415 (553)
                      ++...+++++.+.. .+...+++.+..|++.|+++.+..+ ...+|..++|.+.|.+.+..+....+.+.+++.+++.++
T Consensus       302 ~~~~~~~~~g~~~~-~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        302 GMSAAVFTVGEIIY-APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL  379 (395)
T ss_pred             HHHHHHHHHHHHHH-HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence            44555555554332 3444578889999999999988654 677899999999999999988766666665555555554


Q ss_pred             heE
Q psy15864        416 MYF  418 (553)
Q Consensus       416 ~~~  418 (553)
                      ...
T Consensus       380 ~~~  382 (395)
T PRK10054        380 MLK  382 (395)
T ss_pred             HHh
Confidence            443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.57  E-value=8e-14  Score=136.52  Aligned_cols=253  Identities=13%  Similarity=0.088  Sum_probs=160.9

Q ss_pred             cccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc--------------------chHHHHHH
Q psy15864         92 FLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL--------------------HWRSAAIL  149 (553)
Q Consensus        92 ~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l--------------------gWr~~f~i  149 (553)
                      |+.|.|..  .+.+..|++++.|++++++.+++.+.++++|.+++|+++..+                    +|+++|++
T Consensus        18 f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~   97 (310)
T TIGR01272        18 FVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLL   97 (310)
T ss_pred             HHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHH
Confidence            55666655  456779999999999999999999999999999999887632                    59999997


Q ss_pred             HHHHHHHHHHHhcc--ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhh
Q psy15864        150 NLLFPILALCALYF--IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRM  227 (553)
Q Consensus       150 ~~i~~li~~i~~~~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (553)
                      .+++.+++.+++.+  +||....    .+ ++..          .                        ...   ...+.
T Consensus        98 ia~~~~~~~i~~~~~~~p~~~~~----~~-~~~~----------~------------------------~~~---~~~~~  135 (310)
T TIGR01272        98 LAGALAVLAIIFAFLPLPELQEA----DV-ARVS----------S------------------------GDT---TQKTS  135 (310)
T ss_pred             HHHHHHHHHHHHHHccCCCCCcc----cc-cccc----------c------------------------ccc---cchhh
Confidence            76665555444433  4653210    00 0000          0                        000   00001


Q ss_pred             hhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh---hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCccee
Q psy15864        228 YMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES---IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLA  303 (553)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l  303 (553)
                      ..    ..+.++...+..+.+.+.-..+..|.+.++.+   .+.+.+ .....+...++.++|.+++++++||+|+|+++
T Consensus       136 ~~----~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l  211 (310)
T TIGR01272       136 AF----QFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL  211 (310)
T ss_pred             HH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            11    12223333444455554556666777777753   355433 34667778889999999999999999998887


Q ss_pred             ecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHH
Q psy15864        304 LISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAF  383 (553)
Q Consensus       304 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~  383 (553)
                      .++.++.+++.++...         ... .......++.+++.+..+..+ ++...+.+|.+ .+++.++. .++.+|++
T Consensus       212 ~~~~~l~~~~~~l~~~---------~~~-~~~~~~~~l~g~~~s~i~P~~-~s~a~~~~~~~-~~~asai~-~~~~~Gg~  278 (310)
T TIGR01272       212 AFNAFLAVLLSIGAAL---------THG-YVAMWFVLALGLFNSIMFPTI-FSLALNALGRH-TSQGSGIL-CLAIVGGA  278 (310)
T ss_pred             HHHHHHHHHHHHHHHH---------cCC-HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhh-hhhhHHHH-HHHHhcch
Confidence            7766666555543332         222 222334556666665555443 46667777754 35666764 67889999


Q ss_pred             HHHHHhHHHHhhccchhhHH
Q psy15864        384 AVNKLYYPMLDTFHLWGTLY  403 (553)
Q Consensus       384 i~~~~~~~~~~~~g~~~~~~  403 (553)
                      +.|++.|.+.+..+....++
T Consensus       279 i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       279 IVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHHHHHHHHhccchHHHH
Confidence            99999999999877655554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.57  E-value=9.6e-14  Score=141.71  Aligned_cols=264  Identities=14%  Similarity=0.070  Sum_probs=152.3

Q ss_pred             hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHhcc-ccCCceeeeecCC
Q psy15864        101 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILALCALYF-IPESPHWLISQGR  176 (553)
Q Consensus       101 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l---gWr~~f~i~~i~~li~~i~~~~-lpEsp~~l~~~~~  176 (553)
                      +...+++.+..+  +++...+......++|.++++++++.+   +||++|++.++++++.+++.++ .|++|..      
T Consensus       118 ~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------  189 (396)
T TIGR00882       118 GAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSS------  189 (396)
T ss_pred             hhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchh------
Confidence            334455555432  344555666666677777777776654   9999999998888877655544 4544321      


Q ss_pred             hHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHH
Q psy15864        177 MQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQ  256 (553)
Q Consensus       177 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (553)
                       +...+    .....                         ...........+++++..+...+..+.    ....+....
T Consensus       190 -~~~~~----~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~~l~~~~----~~~~~~~~~  235 (396)
T TIGR00882       190 -ATVAN----ALGAN-------------------------ASAFSLKLALELFRQRKFWMFVLYVVG----VACVYDVFD  235 (396)
T ss_pred             -hhhhc----ccccc-------------------------cCCCCHHHHHHHHcCCcHHHHHHHHHH----HHHHHHHHH
Confidence             00000    00000                         000000112222333222222222111    111222222


Q ss_pred             hhHHHHHHhh----CCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCC
Q psy15864        257 TYAVGIFESI----HAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDS  331 (553)
Q Consensus       257 ~~~~~~~~~~----g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  331 (553)
                      .+.+.++...    +.+.. ......+..+..+++.+..+++.||+|||+.+.++.++.+++.++...         ..+
T Consensus       236 ~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~---------~~~  306 (396)
T TIGR00882       236 QQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF---------ATT  306 (396)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh---------cCC
Confidence            2333333322    22211 234455566777888899999999999999988877777776655443         445


Q ss_pred             ChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhH-HHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q psy15864        332 PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGA-SGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISV  410 (553)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~-~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~  410 (553)
                      .+.+++..++.+++...... ....+..+..|++.++++.++ .+....+++++++.+.|++.+..|+...+.+.+++.+
T Consensus       307 ~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~  385 (396)
T TIGR00882       307 ALEVVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVL  385 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHH
Confidence            66666666666665433322 233567778888888887766 5677899999999999999998887777777777666


Q ss_pred             HHHhhh
Q psy15864        411 VGTLYM  416 (553)
Q Consensus       411 ~~~~~~  416 (553)
                      +..++.
T Consensus       386 i~~~~~  391 (396)
T TIGR00882       386 LFTLIS  391 (396)
T ss_pred             HHHHHH
Confidence            665554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.56  E-value=1.5e-13  Score=140.71  Aligned_cols=270  Identities=11%  Similarity=0.016  Sum_probs=149.7

Q ss_pred             cccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHH-h
Q psy15864         89 KGTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCA-L  161 (553)
Q Consensus        89 ~gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~-~  161 (553)
                      -.|+++|++.+.  ++..+++.|++|+++|+++++++..+..+|.++++++++.+    |||+.|++.++++++.+++ +
T Consensus       109 ~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        109 IARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            468999987653  34557889999999999999999999999998888887654    8999999999888877654 4


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      +++||+++.   +++..                ......                      ..++..++++.    ++..
T Consensus       189 ~~lp~~~~~---~~~~~----------------~~~~~~----------------------~~~~~ll~~~~----~~~~  223 (413)
T PRK15403        189 LAMPETVKR---GAVPF----------------SAKSVL----------------------RDFRNVFRNRL----FLTG  223 (413)
T ss_pred             HhCCCCccc---cCCCC----------------ChHHHH----------------------HHHHHHHcCHH----HHHH
Confidence            458887531   00000                000000                      01112222222    2222


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHhh-CCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFESI-HAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                      .+..+........+..+.|.++.+. +.+... .+......++.++++.+.+.+.++.++++.+.....+..++.+++..
T Consensus       224 ~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~  303 (413)
T PRK15403        224 AATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIV  303 (413)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence            2222333333444555667666553 555433 34445566677777777777654444433332223333334333322


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccch
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW  399 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~  399 (553)
                      .....    ..+.+..++..++++++.+.....+. .. +-.-....+|++.++.+.....+..+++.+.+++.+. +..
T Consensus       304 ~~~~~----~~~~~~~~~~~~l~~~G~~~~~p~~~-~~-al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~  376 (413)
T PRK15403        304 GNLLW----PHVWLWSVLGTSLYAFGIGLIFPTLF-RF-TLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGR  376 (413)
T ss_pred             HHHHc----cccHHHHHHHHHHHHHHHHHHhHHHH-HH-HhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence            11100    12222234455555555544443332 11 1111222468999988888888888888888877655 333


Q ss_pred             hhHHHHHHHHH
Q psy15864        400 GTLYFYAAISV  410 (553)
Q Consensus       400 ~~~~~~~~~~~  410 (553)
                      ..+....+++.
T Consensus       377 ~~~~~~~~~~~  387 (413)
T PRK15403        377 LPFHLLAVVAG  387 (413)
T ss_pred             hHHHHHHHHHH
Confidence            34444433333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.56  E-value=1.5e-13  Score=140.06  Aligned_cols=257  Identities=14%  Similarity=0.048  Sum_probs=146.6

Q ss_pred             hhhhccCcccccchhchhhhhHHHHHHHHHhhccc----cchHHHHHHHHHHHHHHHHHhccccCCceeeeecCChHHHH
Q psy15864        106 YVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESPHWLISQGRMQEAS  181 (553)
Q Consensus       106 ~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~----lgWr~~f~i~~i~~li~~i~~~~lpEsp~~l~~~~~~~~a~  181 (553)
                      +..|..++++++...+....+..+|.++++.+..+    +|||.+|++.+++.++.++..++++++++.  .+.+...  
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~--~~~~~~~--  196 (390)
T TIGR02718       121 MAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA--SPEAPLA--  196 (390)
T ss_pred             HHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC--ccccchh--
Confidence            45677777777877777888888888888865443    399999999998887766555555443210  0000000  


Q ss_pred             HHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHH
Q psy15864        182 ASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVG  261 (553)
Q Consensus       182 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (553)
                                       .                      ...+..+++++..+..+...++..    ........+.+.
T Consensus       197 -----------------~----------------------~~~~~~~l~~~~~~~~~~~~~l~~----~~~~~~~~~~~~  233 (390)
T TIGR02718       197 -----------------R----------------------RASLFRFFRRPLAWSLLALALLSA----MTAVSGFGLSKL  233 (390)
T ss_pred             -----------------h----------------------HHHHHHHHcCcCHHHHHHHHHHHH----HHHHHHHHHhhH
Confidence                             0                      011122333332222222222222    222223334555


Q ss_pred             HHHhhCCCCChH-HHHHHHH-HHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHH
Q psy15864        262 IFESIHAPLDPY-FATLLLG-VAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFL  339 (553)
Q Consensus       262 ~~~~~g~~~~~~-~~~~~~~-i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (553)
                      ++.+.|++.+.. +.....+ +..+++.+++|++.||+|+|+.+.++.++.++..+..........   .......+...
T Consensus       234 ~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  310 (390)
T TIGR02718       234 YLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWL---APGIAVAWSCS  310 (390)
T ss_pred             HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc---CCcHHHHHHHH
Confidence            666667764432 3333343 466778899999999999998887766555333322221111000   11112222222


Q ss_pred             HHHHHHHhhhhccccceeecccccc-chhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHH
Q psy15864        340 VLAAFLTHICIRLLPWMLIGEVFPN-NIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGT  413 (553)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~e~~p~-~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  413 (553)
                      .+.+++.+...... ++++.+..++ +.+++.+++.+.+..++..++|.+.|.+.+..|+...+.+.+++.++..
T Consensus       311 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       311 AFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            23333334443333 3555556655 8899999999999999999999999999998886555655554444433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.53  E-value=2.7e-13  Score=128.38  Aligned_cols=257  Identities=18%  Similarity=0.096  Sum_probs=175.5

Q ss_pred             ccccccc--cchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----chHHHHHHHHHHHHHHHHHhccc
Q psy15864         92 FLYKMAA--PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILALCALYFI  164 (553)
Q Consensus        92 ~~~G~ga--~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----gWr~~f~i~~i~~li~~i~~~~l  164 (553)
                      .+.|.|.  ..++.|++|-+.+| ++-+.++++|.+..++|..+++.+...+     |||..+.+-+.++++++++|+.-
T Consensus       107 ~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         107 LLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444443  34577889999997 5579999999999999888887766554     79999999999999988877643


Q ss_pred             cCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHH
Q psy15864        165 PESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLF  244 (553)
Q Consensus       165 pEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (553)
                      .  .|..    ....                                       ........    +.++.+..+...++
T Consensus       186 ~--~r~~----~~~~---------------------------------------~~~~~~~~----~vw~~~~aW~vtLf  216 (395)
T COG2807         186 A--LREQ----AASI---------------------------------------ATKLVSVR----KVWRSPLAWQVTLF  216 (395)
T ss_pred             c--cccc----cccc---------------------------------------cccccccc----ccccCchhHHHHHH
Confidence            2  2210    0000                                       00000111    12333445566666


Q ss_pred             HHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhccc-CCcceeecchhHHHHHHHHHHHHHH
Q psy15864        245 FIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYT-GKRPLALISTGGSAACFIVVAVYAQ  322 (553)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~  322 (553)
                      +..+...++....|+|.++.+.|++.+. .+..++..+..++.+++...+++|. .+|+..+....++.++.+.+.+.+ 
T Consensus       217 mGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P-  295 (395)
T COG2807         217 MGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP-  295 (395)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh-
Confidence            6777777888999999999999987654 4777788899999999999999975 466666777777777777666532 


Q ss_pred             hhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccc-cccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhh
Q psy15864        323 FHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEV-FPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGT  401 (553)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~  401 (553)
                             .+.+.+.  .+++|++.+..+. +..+.+..- ..++.-+...|+.+.++++.+..+|+++|++.|..|.|..
T Consensus       296 -------~~~~~lw--~~llG~G~G~~F~-laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~  365 (395)
T COG2807         296 -------GQLPILW--ALLLGLGQGGAFP-LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSA  365 (395)
T ss_pred             -------hhHHHHH--HHHHhCccchHHH-HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHH
Confidence                   1222222  3556665555543 333444443 3456667788999999999999999999999999987776


Q ss_pred             HHHHHHHH
Q psy15864        402 LYFYAAIS  409 (553)
Q Consensus       402 ~~~~~~~~  409 (553)
                      .+...++.
T Consensus       366 ~~~~l~~~  373 (395)
T COG2807         366 PLVLLALA  373 (395)
T ss_pred             HHHHHHHH
Confidence            55543333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.53  E-value=1.2e-13  Score=144.93  Aligned_cols=151  Identities=15%  Similarity=0.002  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhccc---CCCCChhHHHHHHHHHHHHhh
Q psy15864        272 PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSY---GWDSPLVPTVFLVLAAFLTHI  348 (553)
Q Consensus       272 ~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  348 (553)
                      ..+...+..++.+++++++|+++||+|||++++++.++++++.++.++........   .....+.+++.+++.|++.+.
T Consensus        57 ~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~  136 (479)
T PRK10077         57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGL  136 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhH
Confidence            34677788899999999999999999999999999888887776665421100000   011234566788888888877


Q ss_pred             hhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH--------hhccchhhHHHHHHHHHHHHhhheEEc
Q psy15864        349 CIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML--------DTFHLWGTLYFYAAISVVGTLYMYFVM  420 (553)
Q Consensus       349 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~  420 (553)
                      ..... .++++|.+|++.||.++++......+|..+++.+...+.        +..+|++.+++.+++.++. ++..+++
T Consensus       137 ~~~~~-~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~l  214 (479)
T PRK10077        137 ASMLS-PMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF-LMLLYFV  214 (479)
T ss_pred             HhhHH-HHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH-HHHHHcC
Confidence            66555 489999999999999999988888888877765544332        2356666666554444444 4445678


Q ss_pred             ccCC
Q psy15864        421 PETE  424 (553)
Q Consensus       421 pet~  424 (553)
                      ||+.
T Consensus       215 ~~s~  218 (479)
T PRK10077        215 PETP  218 (479)
T ss_pred             CCCc
Confidence            9874

>PRK10133 L-fucose transporter; Provisional

Probab=99.53  E-value=2.2e-13  Score=140.33  Aligned_cols=258  Identities=13%  Similarity=0.014  Sum_probs=149.0

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhccc--------------------------
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF--------------------------  140 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~--------------------------  140 (553)
                      -+|+++|+|.+  .+...+++.++.|+++|+..+++.+.++.+|.+++++++..                          
T Consensus       122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~  201 (438)
T PRK10133        122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYK  201 (438)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHH
Confidence            46888888765  34556788898777777777888888888888888766421                          


Q ss_pred             ----cchHHHHHHHH-HHHHHHHHH-hccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHh
Q psy15864        141 ----LHWRSAAILNL-LFPILALCA-LYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKR  214 (553)
Q Consensus       141 ----lgWr~~f~i~~-i~~li~~i~-~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (553)
                          .+||++|++.. +..++++++ ...+||.+.-    .+.+...                                 
T Consensus       202 ~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~----~~~~~~~---------------------------------  244 (438)
T PRK10133        202 HSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----NHSDAKQ---------------------------------  244 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc----ccccccc---------------------------------
Confidence                15677776433 333333332 2335553210    0000000                                 


Q ss_pred             cCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHH-H-hhCCCCC-hHHHHHHHHHHHHHHHHHHh
Q psy15864        215 LGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIF-E-SIHAPLD-PYFATLLLGVAELGGALLCV  291 (553)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~~-~~~~~~~~~i~~~~g~~~~g  291 (553)
                          .......+.+++++..+...+..    ++..........|.+.++ + ..+.+.. ..+......++.++|.++++
T Consensus       245 ----~~~~~~~~~ll~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g  316 (438)
T PRK10133        245 ----GSFSASLSRLARIRHWRWAVLAQ----FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT  316 (438)
T ss_pred             ----cchhhhHHHHHhCchHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                00001112222222222222222    222223333334555453 3 3465543 34667788899999999999


Q ss_pred             hhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhh
Q psy15864        292 VLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATAS  371 (553)
Q Consensus       292 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~  371 (553)
                      ++.||+|+|+++..+.++.++++++..+         .... ..++...+.+++.+..+.++ +....+.+|.+ .+++.
T Consensus       317 ~l~~r~g~~~~l~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~l~glg~~~i~P~~-~s~a~~~~~~~-~~~as  384 (438)
T PRK10133        317 WLISRFAPHKVLAAYALIAMALCLISAF---------AGGH-VGLIALTLCSAFMSIQYPTI-FSLGIKNLGQD-TKYGS  384 (438)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHH---------cCCh-HHHHHHHHHHHHHHHHHHHH-HHHHHcccchh-hccch
Confidence            9999999999887776665555444333         2222 23445566677776665444 57777877754 46777


Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHhhcc-chhhHHH
Q psy15864        372 GASGSSSYIFAFAVNKLYYPMLDTFH-LWGTLYF  404 (553)
Q Consensus       372 ~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~  404 (553)
                      ++.. +..+++.++|.+.+.+.+..+ ....+++
T Consensus       385 ~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v  417 (438)
T PRK10133        385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI  417 (438)
T ss_pred             hHHh-HHhccchHHHHHHHHHHHhccchHHHHHH
Confidence            7765 455788899999998888766 3444443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.52  E-value=4.7e-13  Score=137.58  Aligned_cols=283  Identities=15%  Similarity=0.163  Sum_probs=177.2

Q ss_pred             hhhhhccCcccc--------------------------cchhchhhhhHHHHHHHHHhhcccc------------chHHH
Q psy15864        105 TYVAEITQPHLR--------------------------GMLSATASMTTIFGTVSQLFLGSFL------------HWRSA  146 (553)
Q Consensus       105 ~~i~e~~p~~~R--------------------------g~~~~~~~~~~~lG~~l~~~l~~~l------------gWr~~  146 (553)
                      +|+.|+.+++.+                          ++.++.-.....+|.++.-+++..+            +-|..
T Consensus       149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~  228 (477)
T PF11700_consen  149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA  228 (477)
T ss_pred             HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence            888999998888                          8999888887778877766554332            24888


Q ss_pred             HHHHHHHHHHH-HHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhh
Q psy15864        147 AILNLLFPILA-LCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNY  225 (553)
Q Consensus       147 f~i~~i~~li~-~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (553)
                      +.+.++.-++. +...+++|+.|+.........                .....+.++...                  +
T Consensus       229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~----------------~~~~g~~~l~~t------------------~  274 (477)
T PF11700_consen  229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSS----------------YLRFGFKRLWRT------------------F  274 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchh----------------HHHHHHHHHHHH------------------H
Confidence            88888776655 555666888764200000000                001111111111                  1


Q ss_pred             hhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHH-hhCCCCChH-HHHHHHHHHHHHHHHHHhhhhcccCCc--c
Q psy15864        226 RMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFE-SIHAPLDPY-FATLLLGVAELGGALLCVVLIHYTGKR--P  301 (553)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr~Grr--~  301 (553)
                      +...+    .+-+..+++.++.+..+...+..+...+.. ..+++.... ...++..+.+++|++++|++.||+|.|  +
T Consensus       275 k~~~~----~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~  350 (477)
T PF11700_consen  275 KEIRK----LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKR  350 (477)
T ss_pred             HHHHh----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence            11111    222233344444444555555555555544 567765443 556677899999999999999999998  6


Q ss_pred             eeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHH
Q psy15864        302 LALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIF  381 (553)
Q Consensus       302 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~  381 (553)
                      +++++.++..+..+.. ++.......+..+.+.+++..++.|++.|... +..-++.+++.|+...+..+|+....+...
T Consensus       351 ~l~~~l~~~~~i~~~g-~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~q-s~sRs~~~~LiP~g~e~efFgly~i~gk~s  428 (477)
T PF11700_consen  351 TLLISLILWIIIPLYG-LFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQ-SASRSLFSRLIPPGREAEFFGLYAITGKAS  428 (477)
T ss_pred             HHHHHHHHHHHHHHHH-HHHhhhcccCcccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            6665554443222221 11100111113466777777788888776555 444588899999999999999999999999


Q ss_pred             HHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccCCCCC
Q psy15864        382 AFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRT  427 (553)
Q Consensus       382 ~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  427 (553)
                      ++++|.+++.+.+..+..+.-+....+..++.++++++++..+++.
T Consensus       429 s~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~  474 (477)
T PF11700_consen  429 SWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence            9999999999998887554444444444444444556676665543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.52  E-value=2.5e-13  Score=141.06  Aligned_cols=271  Identities=17%  Similarity=0.097  Sum_probs=174.9

Q ss_pred             cccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhcccc
Q psy15864         92 FLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYFIP  165 (553)
Q Consensus        92 ~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~lp  165 (553)
                      |+.|++..  .+.-.+++.|+.|+++...+.++.++..++..++||.+++.+    |-.++|++.++..++.+++.+.++
T Consensus       111 fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~  190 (524)
T PF05977_consen  111 FLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWK  190 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34444433  234558899999999999999999999988888888888765    778888888776555544433333


Q ss_pred             CCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHH
Q psy15864        166 ESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFF  245 (553)
Q Consensus       166 Esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (553)
                      ..+.    ..+. ..+.                -...+.                  ..++.....+..+..++..+++.
T Consensus       191 ~~~~----~~~~-~~e~----------------~~~~l~------------------~G~ryv~~~~~l~~~l~~~~~~~  231 (524)
T PF05977_consen  191 PPPP----PSSL-PRER----------------FFSALR------------------EGLRYVRSSPPLRSVLLRSFLFN  231 (524)
T ss_pred             cccc----cccc-chhh----------------hhhhHH------------------HHHHHHhcchHHHHHHHHHHHHH
Confidence            2111    0000 0000                001111                  11222333333333322222222


Q ss_pred             HHhhhhhHHHHhhHHHHHH-hhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHh
Q psy15864        246 IGQFGGMTTLQTYAVGIFE-SIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQF  323 (553)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~  323 (553)
                      +.    ...+...+|.+.. ..+.+... .+.....++|+++|+++.+++.+++++++++..+.++.+++.+++++    
T Consensus       232 l~----~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal----  303 (524)
T PF05977_consen  232 LF----ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL----  303 (524)
T ss_pred             Hh----hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc----
Confidence            21    1122233555543 34443333 36677889999999999999999999988888888777777766665    


Q ss_pred             hcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHH
Q psy15864        324 HLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLY  403 (553)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~  403 (553)
                           ..+.+..++..++.|++........ .+.+....|.+.||+++++...+...+..++..+.|.+.+..+....+.
T Consensus       304 -----~~~~~~~~~~l~l~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~  377 (524)
T PF05977_consen  304 -----SPSFWLALIALFLAGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALL  377 (524)
T ss_pred             -----chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence                 5566677777777777765554444 4788899999999999999999999999999999999999888776666


Q ss_pred             HHHHHHHHHHhh
Q psy15864        404 FYAAISVVGTLY  415 (553)
Q Consensus       404 ~~~~~~~~~~~~  415 (553)
                      +.+++.++..++
T Consensus       378 ~a~~~lll~~~~  389 (524)
T PF05977_consen  378 IAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHH
Confidence            555444444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.51  E-value=4.2e-13  Score=137.01  Aligned_cols=247  Identities=11%  Similarity=0.022  Sum_probs=151.1

Q ss_pred             cccccccccccc--hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-------------------------
Q psy15864         89 KGTFLYKMAAPL--VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-------------------------  141 (553)
Q Consensus        89 ~gr~~~G~ga~~--~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-------------------------  141 (553)
                      -+|++.|+|.+.  +...+++.++.|+++|++.+++.+.+..+|..+++.++..+                         
T Consensus        99 ~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  178 (410)
T TIGR00885        99 VGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIK  178 (410)
T ss_pred             HHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHH
Confidence            457788887654  34568889999999999999999999988888887765432                         


Q ss_pred             -----chHHHHHHHHHHHHHHHHHhcc--ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHh
Q psy15864        142 -----HWRSAAILNLLFPILALCALYF--IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKR  214 (553)
Q Consensus       142 -----gWr~~f~i~~i~~li~~i~~~~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (553)
                           +||++|++.+++.++.+++..+  +|+.+.     .+.++              .                    
T Consensus       179 ~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~~~~--------------~--------------------  219 (410)
T TIGR00885       179 HSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SDAKQ--------------I--------------------  219 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----ccccc--------------c--------------------
Confidence                 4999999988877766544433  454221     00000              0                    


Q ss_pred             cCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh---HHHHHHHHHHHHHHHHHHh
Q psy15864        215 LGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP---YFATLLLGVAELGGALLCV  291 (553)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~i~~~~g~~~~g  291 (553)
                           ......+.+.+++......+..++    +.........|++.+....+...+.   .........+.++|.++++
T Consensus       220 -----~~~~~~~~~~~~~~~~~~~l~~f~----yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~  290 (410)
T TIGR00885       220 -----SFSASLSRLARIRHYREGVIAQFF----YVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGT  290 (410)
T ss_pred             -----cchhhHHHHHhChhHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 000011112222222222222222    2222333445666666543322221   2233444467789999999


Q ss_pred             hhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhh
Q psy15864        292 VLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATAS  371 (553)
Q Consensus       292 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~  371 (553)
                      ++.||+++|+++.++.++.++..++...         .... ..++...+.+++.+..+ |..++...+..+++.+..+.
T Consensus       291 ~l~~r~~~~~~l~i~~~~~~~~~ll~~~---------~~~~-~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~  359 (410)
T TIGR00885       291 WLISYLAAHKVLMAYAIIGMALCLGSIF---------AGGH-VGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAA  359 (410)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHH---------cCCh-HHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHH
Confidence            9999999999877776666666555554         2232 33455566666776666 55568888888877654444


Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHhhc
Q psy15864        372 GASGSSSYIFAFAVNKLYYPMLDTF  396 (553)
Q Consensus       372 ~~~~~~~~~~~~i~~~~~~~~~~~~  396 (553)
                      ++..  ..+|+.+.|++.|.+.|..
T Consensus       360 ~l~~--~~~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       360 GLVM--AIIGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             HHHH--HHhccchHHHHHHHHHHHh
Confidence            4433  3499999999999999853

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.49  E-value=1.1e-13  Score=139.57  Aligned_cols=250  Identities=16%  Similarity=0.081  Sum_probs=137.0

Q ss_pred             ccccccccccc-chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhh----cc----------ccchHHHH-HHHHH
Q psy15864         89 KGTFLYKMAAP-LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFL----GS----------FLHWRSAA-ILNLL  152 (553)
Q Consensus        89 ~gr~~~G~ga~-~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l----~~----------~lgWr~~f-~i~~i  152 (553)
                      -+|+++|++.. .....++++|++|+++|++++++...+..+|..+++++    ..          ..+||+.| ++.++
T Consensus        96 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~  175 (366)
T TIGR00886        96 LLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAG  175 (366)
T ss_pred             HHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHH
Confidence            46888888654 44567889999999999999999885555555544433    32          12799999 44454


Q ss_pred             HHHHH-HHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhh
Q psy15864        153 FPILA-LCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRR  231 (553)
Q Consensus       153 ~~li~-~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (553)
                      +.++. ++...+++|+|+..     .++...     ...........      +.               .......+++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~------~~---------------~~~~~~~~~~  224 (366)
T TIGR00886       176 ILLLPALLIFFVGADTPPGK-----PATGKL-----SFKGARWSVGT------GA---------------LGDQLKVFRD  224 (366)
T ss_pred             HHHHHHHHHHHhcccCCccc-----ccchhc-----ccccccccccc------hh---------------HHHHHHHHhc
Confidence            44443 34444567665311     000000     00000000000      00               0011111222


Q ss_pred             cchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhH
Q psy15864        232 TFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGG  309 (553)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~  309 (553)
                      +..+    ...+..+........+..+.|.++++ .+.+.. ......+..++.+++.+++|+++||+|||+.+..+...
T Consensus       225 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~  300 (366)
T TIGR00886       225 RHTW----ILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLG  300 (366)
T ss_pred             cchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHH
Confidence            2111    11222222233334455566666644 465443 33556667788899999999999999999877766655


Q ss_pred             HHHHHHHHHHHHHhhcccCCC-CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHH
Q psy15864        310 SAACFIVVAVYAQFHLSYGWD-SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIF  381 (553)
Q Consensus       310 ~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~  381 (553)
                      .+++.+++.+...      .. +.+..++...+..++.+.+.... +.+++++.| +.+|+++|+.+.++.+|
T Consensus       301 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       301 VAMGAFLVVLGLV------SPLSLAVFIVLFVALFFFSGAGNGST-FALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHhcCC------CcchHHHHHHHHHHHHHHhccccchh-hhcchhhch-hhcccHHHHHHHhccCC
Confidence            5555444433210      11 33333344444445555544443 577888887 58899999888777654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.49  E-value=3.1e-13  Score=138.44  Aligned_cols=181  Identities=12%  Similarity=-0.029  Sum_probs=141.9

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAAC  313 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~  313 (553)
                      ++.++..++.++..+.....+.+..|.+.++.+.+... .+..++..++..++.++.|+++||+|||+++..++++..++
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~   86 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA   86 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence            34455555555666666667777777777777766443 47777888999999999999999999999999998888888


Q ss_pred             HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864        314 FIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML  393 (553)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~  393 (553)
                      .++.++         .++.+.+++.+++.|++.+... +....+++|.+|++.|++++++.+....++..+++.+.+++.
T Consensus        87 ~~~~~~---------~~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        87 STATMF---------ATGPESLYLLRILVGIAEAGFL-PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             HHHHHH---------hcCHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888776         5677888889999998877654 444478899999999999999999999999999998888776


Q ss_pred             h------hccchhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        394 D------TFHLWGTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       394 ~------~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      .      ..+|.+.+.+.++..++..++.++++||++.
T Consensus       157 ~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       157 ALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             hCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            4      3577777777677766666677778888864

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.47  E-value=1.1e-12  Score=133.81  Aligned_cols=251  Identities=15%  Similarity=0.089  Sum_probs=145.2

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHH-Hh
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALC-AL  161 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i-~~  161 (553)
                      -.|++.|++.+  .+....++.|.+++++|+.+.+++.++..+|.++++++++.+    +||+.|++.++++++..+ ..
T Consensus       101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK11652        101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMA  180 (394)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence            35778887654  345557788999999999999999999998888888777654    899999998887766543 44


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      +++||++...   .+..+                       ..                  ..++...+++..+..++..
T Consensus       181 ~~~~~~~~~~---~~~~~-----------------------~~------------------~~~~~~~~~~~~~~~~~~~  216 (394)
T PRK11652        181 RWMPETRPAD---ARRTR-----------------------VL------------------ASYRTLLSNRRFNCYLLML  216 (394)
T ss_pred             HhCCccCccc---cchhH-----------------------HH------------------HHHHHHHcChHHHHHHHHH
Confidence            5578865321   00000                       00                  0111122222222222211


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHh-hCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFES-IHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                      +    ..+.+...+..+.+.++.+ .+.+... .+......++.++++++.+++.||++++..  .....+.++.+++..
T Consensus       217 ~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~  290 (394)
T PRK11652        217 I----GTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWI  290 (394)
T ss_pred             H----HHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            1    1122222333334444444 4554322 344455667778888888888888873222  222222222222221


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      ....    ...+.+..++..++.+++.+...... ..+..|.+| +.+|++.++.+....+++.+++.+.+.+...
T Consensus       291 ~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        291 PGWF----GVMNVWTLLVPAALFFFGAGMLFPLA-TSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHh----ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            1110    01233445555566666665544333 477778887 5679999999988899999999888776543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.45  E-value=7.2e-13  Score=136.84  Aligned_cols=177  Identities=9%  Similarity=0.016  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHH
Q psy15864        237 YAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFI  315 (553)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  315 (553)
                      .++..++.++..+.....+..++|.+.++.+.+... .+...+..++.+++.++.|+++||+|||+++.++.++.+++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~  103 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINI  103 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHH
Confidence            334444444444444556667788888888776433 4677788899999999999999999999999998888888887


Q ss_pred             HHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        316 VVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      ++.+         ..+.+.+++.+++.+++.+..+.+. ..++++.+|++.|++++++.+....+++.+++.+.+.+.+.
T Consensus       104 ~~~~---------~~~~~~l~~~~~l~g~~~g~~~~~~-~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  173 (434)
T PRK11663        104 LFGF---------SSSLWAFALLWVLNAFFQGWGWPVC-AKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH  173 (434)
T ss_pred             HHHH---------HhHHHHHHHHHHHHHHHHHccchHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7665         4456666777777777776655444 48889999999999999999999999999999999998888


Q ss_pred             ccchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        396 FHLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       396 ~g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      .+|.+.+.+.+++.++..++.++++||+
T Consensus       174 ~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        174 YGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            8877777776666555555444556664

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.45  E-value=1e-12  Score=128.73  Aligned_cols=173  Identities=14%  Similarity=0.003  Sum_probs=151.8

Q ss_pred             HHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHH
Q psy15864        239 IVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVV  317 (553)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  317 (553)
                      +...+..|.....-+.....+|.+-++.+.+.. ..+..++++++..+++++...+.+|+.||++++..+.+++++.++.
T Consensus        16 ~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~   95 (394)
T COG2814          16 LALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS   95 (394)
T ss_pred             HHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH
Confidence            344444555555566677788888888887754 3588889999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        318 AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      ++         +++.+++++.|++.++..|..+... .++.+++.|++.|++++++......+...++.++..++-+.+|
T Consensus        96 al---------Ap~f~~Ll~aR~~~g~a~G~f~~i~-~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G  165 (394)
T COG2814          96 AL---------APSFAVLLLARALAGLAHGVFWSIA-AALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             HH---------hccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence            98         7889999999999999988777555 5999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHhhheEEcc
Q psy15864        398 LWGTLYFYAAISVVGTLYMYFVMP  421 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~p  421 (553)
                      |+..|++.+++.++..+..+..+|
T Consensus       166 WR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         166 WRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999

>KOG2504|consensus

Probab=99.44  E-value=5.6e-14  Score=145.23  Aligned_cols=313  Identities=13%  Similarity=0.084  Sum_probs=188.3

Q ss_pred             ccccccccchhhh--hhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhccc-
Q psy15864         92 FLYKMAAPLVLVL--TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYFI-  164 (553)
Q Consensus        92 ~~~G~ga~~~~~~--~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~l-  164 (553)
                      ++.|+|.++...+  +++. .+..++|+.+.|+...+.++|.++-+.+...+    |||+.+++.+.+.+-+++....+ 
T Consensus       143 vi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~r  221 (509)
T KOG2504|consen  143 VIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLR  221 (509)
T ss_pred             HHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence            3455555544333  3444 45568899999999999999999988877766    99999999888886665554443 


Q ss_pred             cCCceeeeecCChHHHHHHHHHH--------cCCC---CCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcc
Q psy15864        165 PESPHWLISQGRMQEASASLCWL--------RGWV---TPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTF  233 (553)
Q Consensus       165 pEsp~~l~~~~~~~~a~~~l~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (553)
                      |.+++..  +. .++..+.....        ....   +..... ..........  .................+-...+
T Consensus       222 p~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~ll  295 (509)
T KOG2504|consen  222 PLSPPKK--PN-EEKDLRNSAASVESTPKPVELRISERDSGLKK-LSLSNLATLK--RGPDKWRNSPLQAFLSMLDLSLL  295 (509)
T ss_pred             CCCcCCC--ch-hhhhhccccccccccccccccccccCCCCCCc-ccccchhhhh--hCCccccccchhhhhhhhhHHHH
Confidence            3232210  00 00000000000        0000   000000 0000000000  00000000000111110011222


Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcc--eeecchhHH
Q psy15864        234 LLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRP--LALISTGGS  310 (553)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~--~l~~~~~~~  310 (553)
                      +.+.++...+.......++.....++|.+....+++.+ .+...++.++..++|.++.|+++|+...++  +..++.++.
T Consensus       296 ~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  296 KDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIA  375 (509)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence            33445555666666667777778888888887787654 457788899999999999999999988433  333444444


Q ss_pred             HHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhH
Q psy15864        311 AACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYY  390 (553)
Q Consensus       311 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~  390 (553)
                      +++.+.+.+         ..+.+.++....++|++.+... .+....+.|+.+.+.-..+.|+...+..++..++|++.+
T Consensus       376 gl~~~~~p~---------~~~~~~l~~~~~~fG~~~g~~~-~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag  445 (509)
T KOG2504|consen  376 GLARLFLPF---------ATTYVGLIVFSILFGFCVGSFS-SLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG  445 (509)
T ss_pred             HHHHHHHHH---------hccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence            444433333         4556667777777777665444 444467889999999899999999999999999999999


Q ss_pred             HHHhhccchhhHHHHHHHHHHHHhhheEEcc
Q psy15864        391 PMLDTFHLWGTLYFYAAISVVGTLYMYFVMP  421 (553)
Q Consensus       391 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p  421 (553)
                      .+.+..+.+...+.++.++.++..+.++..|
T Consensus       446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  446 LLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9888888666666666666666666666666

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.43  E-value=1.1e-11  Score=127.99  Aligned_cols=241  Identities=18%  Similarity=0.168  Sum_probs=161.3

Q ss_pred             hhhhhccC-cccccchhchhhhhHHHHHHHHHhhcccc-----------chHHHHHHHHHHHHHHHHHhcc-ccCCceee
Q psy15864        105 TYVAEITQ-PHLRGMLSATASMTTIFGTVSQLFLGSFL-----------HWRSAAILNLLFPILALCALYF-IPESPHWL  171 (553)
Q Consensus       105 ~~i~e~~p-~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----------gWr~~f~i~~i~~li~~i~~~~-lpEsp~~l  171 (553)
                      +++.|+++ +++|.+..++-..+..+|.++...+...+           +|++..++.++++++..++.++ ++|.++- 
T Consensus       126 al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~-  204 (428)
T PF13347_consen  126 ALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVE-  204 (428)
T ss_pred             hcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccc-
Confidence            67888887 57899999999888888886554443322           5999999998888887655544 7772110 


Q ss_pred             eecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhh
Q psy15864        172 ISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGG  251 (553)
Q Consensus       172 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (553)
                           .++.                                   .........++.+++++....+++..++..+.....
T Consensus       205 -----~~~~-----------------------------------~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~  244 (428)
T PF13347_consen  205 -----VTEQ-----------------------------------EKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALM  244 (428)
T ss_pred             -----cccc-----------------------------------ccccccccchhhhcccchHHHHHHHHHHHHhhhhhh
Confidence                 0000                                   000111223344444444444444444433333333


Q ss_pred             hHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDS  331 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  331 (553)
                      .....+|....   .+.+........+..++.+++.++.++++||+|+|+++..+.++.+++.+++.+..       ..+
T Consensus       245 ~~~~~y~~~~v---l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------~~~  314 (428)
T PF13347_consen  245 NTFLPYYFTYV---LGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG-------PGS  314 (428)
T ss_pred             hhHHHHHHHHH---hcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH-------hhh
Confidence            33333333333   23333344566677888999999999999999999999999999988888777643       246


Q ss_pred             ChhHHHHHHHHHHHHhhhhccccceeecccccc-------chhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        332 PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPN-------NIRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      .+..++...+.+++.+..+ .+++++++|+.+.       +..|...|+..+...++..+++.+.+.+++..|
T Consensus       315 ~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  315 PWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            7777777888888776665 5667999999873       345788899999999999999999888876544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.42  E-value=2.1e-12  Score=131.50  Aligned_cols=161  Identities=14%  Similarity=-0.023  Sum_probs=127.4

Q ss_pred             HHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCC
Q psy15864        254 TLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSP  332 (553)
Q Consensus       254 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  332 (553)
                      .....+|.+.++.+.+... .+......++..++.++.|+++||+|||+++.++.++.+++.++..+         .++.
T Consensus        27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---------~~~~   97 (390)
T PRK03545         27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL---------AWNF   97 (390)
T ss_pred             HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH---------hccH
Confidence            3444567777777776443 46666777888889999999999999999999998888888877766         5677


Q ss_pred             hhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHH
Q psy15864        333 LVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVG  412 (553)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~  412 (553)
                      +.+++.+++.+++.+... +...+++.+.+|++.|+.++|+......++..++|++.+.+.+..+|.+.+++.++++++.
T Consensus        98 ~~l~~~r~~~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~  176 (390)
T PRK03545         98 TVLLISRIGIAFAHAIFW-SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALIT  176 (390)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence            888888888877665443 4444788999999999999999999999999999999998888888888888877777766


Q ss_pred             HhhheEEcccCC
Q psy15864        413 TLYMYFVMPETE  424 (553)
Q Consensus       413 ~~~~~~~~pet~  424 (553)
                      .++.+.++|+.+
T Consensus       177 ~~~~~~~~~~~~  188 (390)
T PRK03545        177 LLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHhCCCCC
Confidence            666555667653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.42  E-value=1.2e-11  Score=128.77  Aligned_cols=292  Identities=10%  Similarity=-0.051  Sum_probs=150.5

Q ss_pred             ccccccccccc--chhhhhhhhhccCcc--cccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPH--LRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCA  160 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~--~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~  160 (553)
                      -+|+++|+|.+  .+...++++|++|++  +|+.+.+++.++.++|.++++.+++++    |||+.|++.++..++.++.
T Consensus       110 ~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~  189 (489)
T PRK10207        110 IALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLV  189 (489)
T ss_pred             HHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Confidence            46788888765  456789999999887  558889999999999998888877765    9999999975533333333


Q ss_pred             hccccCCceee--eecC-ChHHHHHHHH---------HHcCCCCCcchHHHHHHHHHHHHHHH-HHhcCCCCCCChhhhh
Q psy15864        161 LYFIPESPHWL--ISQG-RMQEASASLC---------WLRGWVTPDKVQTELSQITKAIEESE-LKRLGKDGQRRPNYRM  227 (553)
Q Consensus       161 ~~~lpEsp~~l--~~~~-~~~~a~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  227 (553)
                      +++.++..+-.  ..++ +.+.....+.         .+....+................... ...... .      ..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~-~------~~  262 (489)
T PRK10207        190 YFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFK-L------DK  262 (489)
T ss_pred             HHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-C------CH
Confidence            33332111100  0001 0111000000         00000000000000000000000000 000000 0      01


Q ss_pred             hhhhcchhHHHHHHH--HHHHHhhhhhHHHHhhHHHHHHh------hCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCC
Q psy15864        228 YMRRTFLLPYAIVTS--LFFIGQFGGMTTLQTYAVGIFES------IHAPLDPYFATLLLGVAELGGALLCVVLIHYTGK  299 (553)
Q Consensus       228 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Gr  299 (553)
                      ..++    +.+..+.  +.....+..+....+.++.+.+.      .|+.....+...+..+..++.+++.+++.||+++
T Consensus       263 ~~r~----r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~  338 (489)
T PRK10207        263 TGRN----KMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGS  338 (489)
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhh
Confidence            1111    1111111  11111112222222223333321      1222234455555666777788888999999999


Q ss_pred             cce-------eecchhHHHHHHHHHHHHHH-hhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhh
Q psy15864        300 RPL-------ALISTGGSAACFIVVAVYAQ-FHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATAS  371 (553)
Q Consensus       300 r~~-------l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~  371 (553)
                      |+.       +.+++++.+++.+.++.... ....+...+.++++...++.+++.+... +....++....|++.+|.++
T Consensus       339 r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~-~~g~~~~~~~aP~~~~g~~~  417 (489)
T PRK10207        339 KGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFIS-ALGLAMIAALVPQHLMGFIL  417 (489)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhChHHHHHHHH
Confidence            874       55666666666554432111 1111112345556666667777665554 44458888999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhHHH
Q psy15864        372 GASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       372 ~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      |+.+....+++.++..+....
T Consensus       418 g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        418 GMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988887776543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.41  E-value=9.6e-12  Score=128.98  Aligned_cols=295  Identities=16%  Similarity=0.132  Sum_probs=155.1

Q ss_pred             ccccccccccccccch-hhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHH
Q psy15864         86 NEEKGTFLYKMAAPLV-LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCA  160 (553)
Q Consensus        86 ~~~~gr~~~G~ga~~~-~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~  160 (553)
                      .--.|..+.|+|++.. +....++|..|.+.|+...++......+....++.++..+    +|||.|++.+++..+.+++
T Consensus       133 ~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  133 TFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            4555677777876643 3445689999999998877766655544443444444333    8999999999887776544


Q ss_pred             hcc--ccCCceeeeecCC---hHHHHHHHHHH------------------cCCC-CCcchHHHHHHHHHHHHHHHHHhcC
Q psy15864        161 LYF--IPESPHWLISQGR---MQEASASLCWL------------------RGWV-TPDKVQTELSQITKAIEESELKRLG  216 (553)
Q Consensus       161 ~~~--lpEsp~~l~~~~~---~~~a~~~l~~~------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  216 (553)
                      .++  .|.+  +-..+++   ..+....+..+                  .+.. .++.....+..+.-..-.-......
T Consensus       213 ~~~fY~PP~--~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~w  290 (599)
T PF06609_consen  213 IFFFYFPPP--RAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVW  290 (599)
T ss_pred             HHHHhCCCc--hhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHh
Confidence            433  3432  2111111   11211112211                  1111 1111111111111110000000000


Q ss_pred             C---CCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHH-hhCCCC----ChHHHHHHHHHHHHHHHH
Q psy15864        217 K---DGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFE-SIHAPL----DPYFATLLLGVAELGGAL  288 (553)
Q Consensus       217 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~----~~~~~~~~~~i~~~~g~~  288 (553)
                      +   ..........+++.+   |.+.+.++..+.....++....+.|.... .++.+.    ...+.....+++.++|++
T Consensus       291 E~~~~~~~Pl~P~~Lf~~~---r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~  367 (599)
T PF06609_consen  291 EWFGAPKDPLFPHRLFKDR---RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAV  367 (599)
T ss_pred             hhhccCCCCcCCHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHH
Confidence            0   001111111233221   22222222222333333444444444433 333322    234666777888889999


Q ss_pred             HHhhhhcccCCc-ceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchh
Q psy15864        289 LCVVLIHYTGKR-PLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIR  367 (553)
Q Consensus       289 ~~g~l~dr~Grr-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R  367 (553)
                      +.|.+..+++|- +.++++.+++.+++.+++...       ..+....+...++.+++.+....+.. +.+.-+.|++.-
T Consensus       368 i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~-------~~n~~~~i~~~~l~g~giG~~~~~~~-~~~ql~~p~~~i  439 (599)
T PF06609_consen  368 ILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR-------PDNKNAAIAFLVLAGFGIGGILVPAI-VIAQLIVPDEDI  439 (599)
T ss_pred             HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc-------CCCcchHHHHHHHHHHhHHHHHHHHH-HeeEeeeCchHH
Confidence            999999988874 444566555554444433321       23334445556666776666655543 666667899999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864        368 ATASGASGSSSYIFAFAVNKLYYPML  393 (553)
Q Consensus       368 g~~~~~~~~~~~~~~~i~~~~~~~~~  393 (553)
                      |+++|+..+++.+|+.++..++..+.
T Consensus       440 g~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  440 GTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999988776544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.41  E-value=1.7e-12  Score=131.87  Aligned_cols=170  Identities=16%  Similarity=0.098  Sum_probs=131.9

Q ss_pred             HHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhh
Q psy15864        246 IGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFH  324 (553)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~  324 (553)
                      +....+........|.+.++.+.+.. ..+...+..++.+++.++.|+++||+|||+.+..+.++.+++.+++..     
T Consensus        15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----   89 (385)
T TIGR00710        15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL-----   89 (385)
T ss_pred             HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH-----
Confidence            33334445555566777777777643 346777888999999999999999999999999988888887777665     


Q ss_pred             cccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHH
Q psy15864        325 LSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYF  404 (553)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~  404 (553)
                          .++.+.+++.+++.+++.+...... .+++.|.+|++.|+++.++.+....++..+++.+.+.+.+..+|...+++
T Consensus        90 ----~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  164 (385)
T TIGR00710        90 ----SNNIETLLVLRFVQAFGASAGSVIS-QALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF  164 (385)
T ss_pred             ----HccHHHHHHHHHHHHcchhHHHHHH-HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence                4566677777888887766555444 48889999999999999999999999999999999988888887777777


Q ss_pred             HHHHHHHHHhhheEEcccCCC
Q psy15864        405 YAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       405 ~~~~~~~~~~~~~~~~pet~~  425 (553)
                      .+++.++..++.+++.||++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       165 LSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCCCC
Confidence            777666666666667777644

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.40  E-value=2e-12  Score=135.83  Aligned_cols=179  Identities=14%  Similarity=-0.002  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHH
Q psy15864        237 YAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFI  315 (553)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  315 (553)
                      .++..++..+........+...+|.+..+.+.+. +..|....+.++..++.++.|+++||+|||++++++.++++++.+
T Consensus         7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~   86 (495)
T PRK14995          7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL   86 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            3444455555556666677777888888877654 456888888888889999999999999999999999999999988


Q ss_pred             HHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccc-cccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q psy15864        316 VVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEV-FPNNIRATASGASGSSSYIFAFAVNKLYYPMLD  394 (553)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~  394 (553)
                      ++++         .++.+.+++++++.|++.+...... ...+.+. .|++.|+++.|+......++..++|.+.+.+.+
T Consensus        87 ~~~~---------a~~~~~li~~r~l~G~g~~~~~~~~-~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995         87 AAAF---------SPTASWLIATRALLAIGAAMIVPAT-LAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             HHHH---------cCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8876         6788888889998888776544333 3445455 478999999999999999999999999999999


Q ss_pred             hccchhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        395 TFHLWGTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       395 ~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      ..+|++.+++...+.++..++.++++|+...
T Consensus       157 ~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        157 HFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9998888887777777666666677787543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.40  E-value=2.6e-12  Score=131.67  Aligned_cols=162  Identities=11%  Similarity=0.031  Sum_probs=125.7

Q ss_pred             HHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCC
Q psy15864        254 TLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSP  332 (553)
Q Consensus       254 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  332 (553)
                      ....-+|.+.++.+.+... .+...++.++.+++.++.|+++||+|||++++.+.++.+++.++...         .++.
T Consensus        34 ~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---------a~~~  104 (413)
T PRK15403         34 LIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF---------TTSM  104 (413)
T ss_pred             hhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH---------cCCH
Confidence            3334444555566655333 36677788999999999999999999999999998888888777766         6677


Q ss_pred             hhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHH
Q psy15864        333 LVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVG  412 (553)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~  412 (553)
                      +.+++++++.|++.+.. .+..++++.|.+|++.|++++++......++..++|.+.+.+.+..+|.+.+++.+++.++.
T Consensus       105 ~~l~~~r~l~Gi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~  183 (413)
T PRK15403        105 TQFLIARFIQGTSICFI-ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA  183 (413)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            78888899988876543 34445788899999999999999999999999999988888888778877787777766666


Q ss_pred             HhhheEEcccCCC
Q psy15864        413 TLYMYFVMPETEG  425 (553)
Q Consensus       413 ~~~~~~~~pet~~  425 (553)
                      .++.++++||++.
T Consensus       184 ~~~~~~~lp~~~~  196 (413)
T PRK15403        184 FVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHhCCCCcc
Confidence            6655667888753

>TIGR00895 2A0115 benzoate transport

Probab=99.40  E-value=1e-12  Score=133.96  Aligned_cols=178  Identities=17%  Similarity=0.016  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHH
Q psy15864        237 YAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFI  315 (553)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  315 (553)
                      .++..++..+..........++.|.+.+..+.+.. ..+...+..++.+++.++.|+++||+|||+++.++.++.+++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~   97 (398)
T TIGR00895        18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTL   97 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            33334444444444455666777888777776543 34666677788999999999999999999999988888777777


Q ss_pred             HHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        316 VVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      ++.+         ..+.+.+++.+++.+++.+..... ..++++|.+|++.|+++.++......++..+++.+.+.+.+.
T Consensus        98 ~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  167 (398)
T TIGR00895        98 LCAL---------ATNVTQLLILRFLAGLGLGGLMPN-LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV  167 (398)
T ss_pred             HHHH---------ccchHHHHHHHHHHhcccccchhh-HHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence            6665         456677777778877776555544 458999999999999999999999999999999999998888


Q ss_pred             ccchhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        396 FHLWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       396 ~g~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      .+|...+.+.+++.++..++.++++||+.
T Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       168 FGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             ccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            88777777666666666666667778764

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.39  E-value=5.3e-12  Score=132.92  Aligned_cols=146  Identities=14%  Similarity=0.062  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhcc
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRL  352 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      .+......++.+++++++|+++||+|||+++.+++++.+++.++.++...   .....+.+.+++++++.|++.+....+
T Consensus        59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~r~l~G~~~g~~~~~  135 (502)
T TIGR00887        59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG---SSPKSVMATLCFWRFWLGVGIGGDYPL  135 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC---cccchHHHHHHHHHHHHHHHHhhhhHH
Confidence            36677788999999999999999999999999988888888776665210   000001356788899999888777655


Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh-----------------------hccchhhHHHHHHHH
Q psy15864        353 LPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD-----------------------TFHLWGTLYFYAAIS  409 (553)
Q Consensus       353 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------------~~g~~~~~~~~~~~~  409 (553)
                      .+ +|++|.+|++.||+++++...+..+|.++++.+...+..                       ..+ |+..+.+++++
T Consensus       136 ~~-~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip  213 (502)
T TIGR00887       136 SA-IITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVP  213 (502)
T ss_pred             HH-HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhccc-HHHHHHHHHHH
Confidence            54 999999999999999999998888888888777654432                       123 55555666666


Q ss_pred             HHHHhhheEEcccC
Q psy15864        410 VVGTLYMYFVMPET  423 (553)
Q Consensus       410 ~~~~~~~~~~~pet  423 (553)
                      .++.++..+++|||
T Consensus       214 ~~i~~~~~~~lpES  227 (502)
T TIGR00887       214 ALLALYFRLTIPET  227 (502)
T ss_pred             HHHHHHHHHhCCCC
Confidence            66666667889998

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.39  E-value=3.9e-12  Score=130.17  Aligned_cols=179  Identities=12%  Similarity=0.005  Sum_probs=134.5

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAAC  313 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~  313 (553)
                      ++.+..+++.++........+....|.+.++.+.+.. ..+..++..++.+++.++.|+++||+|||++++++.++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~   90 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG   90 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444555555666666667777777888777887643 457777888999999999999999999999999888888888


Q ss_pred             HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864        314 FIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML  393 (553)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~  393 (553)
                      .+++.+         .++.+.+++.+++.|++.+...... .+++.|.+|++.|+.+.++......++.++++.+.+.+.
T Consensus        91 ~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891        91 TLACGF---------APGYITMFIARLVIGIGMGGEYGSS-AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             HHHHHH---------hccHHHHHHHHHHHHhhhhhhhHHH-HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777665         4567777888888888776655444 488899999999999999999999999999998888877


Q ss_pred             hhcc--chhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        394 DTFH--LWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       394 ~~~g--~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      +..+  |...+. ++++..++.++....+||+.
T Consensus       161 ~~~~~~w~~~f~-~~~~~~~~~~~~~~~~~~~~  192 (405)
T TIGR00891       161 PVWGDGWRALFF-ISILPIIFALWLRKNIPEAE  192 (405)
T ss_pred             HhcCccHHHHHH-HHHHHHHHHHHHHHhCCCCh
Confidence            6655  444444 34444444444555677754

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.39  E-value=2.1e-12  Score=124.98  Aligned_cols=183  Identities=12%  Similarity=0.025  Sum_probs=156.5

Q ss_pred             hcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhH
Q psy15864        231 RTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGG  309 (553)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~  309 (553)
                      ++++.+.++..++.+..++..--.+..-.|.+.++.+++.. .....+.+.+..-++-++.|.++||.+.|..+.+++++
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil  103 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence            34556667777777777777778888888999888877654 45778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHh
Q psy15864        310 SAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLY  389 (553)
Q Consensus       310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~  389 (553)
                      +++..+++++         ..+.+.+.++..+.+.+.|.++.+.. ..++..+|++.||+..++.+...++|+.+.|.+.
T Consensus       104 sai~nil~Gf---------s~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~  173 (448)
T COG2271         104 SAIVNILFGF---------SPSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA  173 (448)
T ss_pred             HHHHHHHHhh---------hhHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence            9999999998         55777888888999999999998775 7889999999999999999999999999999999


Q ss_pred             --HHHHhhccchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        390 --YPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       390 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                        +.+..+.+|...|++-+++++++++++++.++++
T Consensus       174 ~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         174 LLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence              8888777877788888888888888877776554

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.39  E-value=3.2e-12  Score=130.07  Aligned_cols=164  Identities=13%  Similarity=0.007  Sum_probs=131.8

Q ss_pred             hHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      ...+....|.+.+..+.+.. ..+...+..++.+++.++.|+++||+|||+++.++.++.+++.+++.+         ..
T Consensus        10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---------~~   80 (399)
T TIGR00893        10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF---------AG   80 (399)
T ss_pred             HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH---------Hc
Confidence            34455566666677776543 457777888999999999999999999999999998888888877766         45


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISV  410 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~  410 (553)
                      +.+.+++.+++.+++.+...... ..++.|.+|++.|+.++++......++..+++.+.+.+.+..+|.+.+.+.+++.+
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  159 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGI-ILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGI  159 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHH-HHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            67788888888888876655444 58999999999999999999999999999999999988888887777777777777


Q ss_pred             HHHhhheEEcccCCC
Q psy15864        411 VGTLYMYFVMPETEG  425 (553)
Q Consensus       411 ~~~~~~~~~~pet~~  425 (553)
                      +..++.+++.|+++.
T Consensus       160 ~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       160 IWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHhhheecCCCC
Confidence            766666667777643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.39  E-value=3.4e-12  Score=130.18  Aligned_cols=179  Identities=12%  Similarity=0.131  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHH
Q psy15864        237 YAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFI  315 (553)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  315 (553)
                      ++....+..+....+.......+|.+.++.+.+... .+...+..++.+++.++.|+++||+|||+.++++.++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~   83 (392)
T PRK10473          4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence            334444455555555566667788888877766433 3666677788899999999999999999999988888887777


Q ss_pred             HHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        316 VVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      ++..         ..+.+.+++.+++.+++.+.... ..+.++.|.+|++.|+.+.++.+....++..++|.+.+.+.+.
T Consensus        84 ~~~~---------~~~~~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~  153 (392)
T PRK10473         84 LCSL---------AETSSLFLAGRFLQGIGAGCCYV-VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK  153 (392)
T ss_pred             HHHH---------hCcHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6665         44556667777777776655443 3458889999999999999999999889989999888877777


Q ss_pred             ccchhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        396 FHLWGTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       396 ~g~~~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      .+|...+.+.+++.++..++.++++||++.
T Consensus       154 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        154 FPWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            787777777777766666666666787643

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.39  E-value=4.7e-12  Score=128.94  Aligned_cols=159  Identities=9%  Similarity=-0.024  Sum_probs=126.1

Q ss_pred             HhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChh
Q psy15864        256 QTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLV  334 (553)
Q Consensus       256 ~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  334 (553)
                      ...+|.+.++.+.+... .+......++.+++.++.|+++||+|||++++.+.++.+++.++..+         ..+.+.
T Consensus        40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~---------~~~~~~  110 (394)
T PRK10213         40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF---------ANSFSL  110 (394)
T ss_pred             HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH---------HChHHH
Confidence            34566677777766443 46666778888999999999999999999999999998888777665         557788


Q ss_pred             HHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHh
Q psy15864        335 PTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTL  414 (553)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  414 (553)
                      +++.+++.+++.+.... ....++.|.+|++.|+.+.++......++..++|.+.+.+.+..+|.+.+++.+++.+++.+
T Consensus       111 l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        111 LLIGRACLGLALGGFWA-MSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHhhHHHHH-HHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            88889998988776554 44588899999999999999999999999999999999998888877777776665555544


Q ss_pred             hheEEcccCC
Q psy15864        415 YMYFVMPETE  424 (553)
Q Consensus       415 ~~~~~~pet~  424 (553)
                      +.+..+||++
T Consensus       190 ~~~~~~p~~~  199 (394)
T PRK10213        190 WIIKSLPSLP  199 (394)
T ss_pred             HHHHHCCCCC
Confidence            4444567753

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.39  E-value=3.6e-12  Score=130.66  Aligned_cols=176  Identities=13%  Similarity=-0.049  Sum_probs=132.2

Q ss_pred             HHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHH
Q psy15864        239 IVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVV  317 (553)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  317 (553)
                      ..+++..+.............|.+.++.+.+.. ..+......++.+++.++.|+++||+|||+++..+.++..++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   97 (406)
T PRK11551         18 GLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLAT   97 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            333334444444455566677888777777643 3477778889999999999999999999999999888777777665


Q ss_pred             HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        318 AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      .+         ..+.+.+++.+++.+++.+...... .+++.|.+|++.|++++++.+....+++.+++.+.+.+.+..+
T Consensus        98 ~~---------~~~~~~~~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  167 (406)
T PRK11551         98 AQ---------AWDFPSLLVARLLTGVGLGGALPNL-IALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA  167 (406)
T ss_pred             HH---------hccHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            55         5567777888888888776655443 4889999999999999999999999999999888777777777


Q ss_pred             chhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        398 LWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      |...+++.+++.++..++..+++||+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        168 WRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            666666666655555555556678763

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.38  E-value=1.1e-12  Score=137.80  Aligned_cols=175  Identities=17%  Similarity=0.127  Sum_probs=138.1

Q ss_pred             HHHHHHHHhhhhhHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHH
Q psy15864        240 VTSLFFIGQFGGMTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA  318 (553)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  318 (553)
                      .+++..+.............|.+.++.+.+. +..+......++.+++.++.|+++||+|||++++++.++.+++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   85 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG   85 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence            3334444445555666777888888887764 345778888999999999999999999999999999888888887776


Q ss_pred             HHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        319 VYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                      .         .++.+.+++.+++.|++.+... +...+++.|.+|++.|+.+.++......++..++|.+.+.+.+..+|
T Consensus        86 ~---------~~~~~~l~~~~~~~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w  155 (485)
T TIGR00711        86 V---------APNLELMIIFRVIQGFGGGPLI-PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW  155 (485)
T ss_pred             C---------cCCHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc
Confidence            5         5677788888888888776554 44458999999999999999999999999999999999998888888


Q ss_pred             hhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        399 WGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      .+.+++.+.+.++..++.++++|+.+
T Consensus       156 ~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       156 RWIFLINVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             eehhhhhhHHHHHHHHHHHHHcCCcc
Confidence            87777766666666655556667653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09669 putative symporter YagG; Provisional

Probab=99.38  E-value=3.9e-12  Score=131.83  Aligned_cols=240  Identities=11%  Similarity=0.037  Sum_probs=133.9

Q ss_pred             hhhhhcc-CcccccchhchhhhhHHHHHHHHHhhcc----c-------cchHHHHHHHHHHHHHHHHHhcc-ccCCceee
Q psy15864        105 TYVAEIT-QPHLRGMLSATASMTTIFGTVSQLFLGS----F-------LHWRSAAILNLLFPILALCALYF-IPESPHWL  171 (553)
Q Consensus       105 ~~i~e~~-p~~~Rg~~~~~~~~~~~lG~~l~~~l~~----~-------lgWr~~f~i~~i~~li~~i~~~~-lpEsp~~l  171 (553)
                      ++.+|++ ++++|++..++...+..+|.++++.+..    .       .+|+..+.+.++++++++++.++ .+|.+.- 
T Consensus       132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~-  210 (444)
T PRK09669        132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP-  210 (444)
T ss_pred             HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC-
Confidence            6678887 5578998888877777777666543221    1       27998888888887776554443 5553210 


Q ss_pred             eecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhh
Q psy15864        172 ISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGG  251 (553)
Q Consensus       172 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (553)
                         .+  +            ....                         ....++.+++++.++.+++..++........
T Consensus       211 ---~~--~------------~~~~-------------------------~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~  248 (444)
T PRK09669        211 ---EV--D------------NSSS-------------------------VWKDLKLLLGNSQWRIMFIFNVVLLTAVVTR  248 (444)
T ss_pred             ---CC--c------------CCCC-------------------------HHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence               00  0            0000                         0011222333333333322222221221111


Q ss_pred             hHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDS  331 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  331 (553)
                      .....+|..+.+   +.............+..+++.+++++++||+|+|+.+.++.++.+++.+.+.+..       ..+
T Consensus       249 ~~~~~y~~~~~~---~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------~~~  318 (444)
T PRK09669        249 GGATLYYVNYVL---LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP-------PSN  318 (444)
T ss_pred             hhhhheeeeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC-------cch
Confidence            111122211111   1111122333445577788889999999999999988877665554333322211       234


Q ss_pred             ChhHHHHHHHHHHHHhhhhccccceeeccccc-------cchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        332 PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFP-------NNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                      .+.+++..++.+++.+... ++++++++|+.+       .+..|...|+..++..++..+++.+.+.+++..|+
T Consensus       319 ~~~~~~~~~i~g~~~~~~~-~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        319 VWLIFALNILFNFIQNLTT-PLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4445555566666665444 555688888875       23345667888888899999999999988876554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.37  E-value=2.8e-11  Score=125.98  Aligned_cols=322  Identities=11%  Similarity=-0.013  Sum_probs=165.0

Q ss_pred             ccccccccccc--chhhhhhhhhccCccc---ccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHL---RGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALC  159 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~---Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i  159 (553)
                      -++++.|+|.+  .+...+++++++|+++   |+.+.+++.++.++|.++|+++++++    |||+.|++.++..++.++
T Consensus       107 ~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l  186 (475)
T TIGR00924       107 YGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL  186 (475)
T ss_pred             HHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            35667777654  3577789999998754   88899999999999999999888765    899999998765555443


Q ss_pred             Hhccc----cCCceeeeecCChHHHHHHHH--H--------HcC--CCCCcchHHHHHH---HHHHHHHHHHHhcCCCCC
Q psy15864        160 ALYFI----PESPHWLISQGRMQEASASLC--W--------LRG--WVTPDKVQTELSQ---ITKAIEESELKRLGKDGQ  220 (553)
Q Consensus       160 ~~~~l----pEsp~~l~~~~~~~~a~~~l~--~--------~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  220 (553)
                      .+++.    ++.|+.- ...+.++......  .        +..  .............   .............     
T Consensus       187 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  260 (475)
T TIGR00924       187 TFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFK-----  260 (475)
T ss_pred             HHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            33332    2222100 0000010000000  0        000  0000000000000   0000000000000     


Q ss_pred             CChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hC-----CCCChHHHHHHHHHHHHHHHHHHhhhh
Q psy15864        221 RRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IH-----APLDPYFATLLLGVAELGGALLCVVLI  294 (553)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g-----~~~~~~~~~~~~~i~~~~g~~~~g~l~  294 (553)
                        .......+++.  ..++..++..+..+..+.-....++.+..+ .+     +.....+...+.++..++..++..++-
T Consensus       261 --~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~  336 (475)
T TIGR00924       261 --PRLDAVARNKM--YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIW  336 (475)
T ss_pred             --ccCCHHHHhHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHH
Confidence              00000001111  112222222222222222323323333222 11     122244556666666666655544433


Q ss_pred             cccCC-----ccee--ecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchh
Q psy15864        295 HYTGK-----RPLA--LISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIR  367 (553)
Q Consensus       295 dr~Gr-----r~~l--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R  367 (553)
                      .+++|     +...  .+++++.+++.+++++...........+.+++++..++.+++-... .+....++++..|++.|
T Consensus       337 ~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~-~p~~~~~~~~~aP~~~~  415 (475)
T TIGR00924       337 TRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMI-SPLGLSWWTKIAPQRLM  415 (475)
T ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHH
Confidence            33333     2222  5566666666666554322111111346666777777777766444 45556899999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcc
Q psy15864        368 ATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMP  421 (553)
Q Consensus       368 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p  421 (553)
                      |+.+|+......++..+++.+........++...+...+++++++.++.++..|
T Consensus       416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888776665555555666666666555555544333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.37  E-value=5.2e-12  Score=128.22  Aligned_cols=166  Identities=9%  Similarity=0.026  Sum_probs=131.2

Q ss_pred             hhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhccc
Q psy15864        249 FGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSY  327 (553)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~  327 (553)
                      ..........+|.+.++.|.+.. ..+......++.+++.++.|+++||+|||+++.++.++.+++.++.++        
T Consensus        16 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~--------   87 (382)
T PRK10091         16 GMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL--------   87 (382)
T ss_pred             HhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH--------
Confidence            33344555677777777777643 357778889999999999999999999999999999988888887766        


Q ss_pred             CCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHH
Q psy15864        328 GWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAA  407 (553)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~  407 (553)
                       .++.+.+++.+++.|++.+...... .+++.+.+|++.|+.++++......++..+++.+.+.+.+..+|.+.+.+.++
T Consensus        88 -~~~~~~l~~~r~l~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~  165 (382)
T PRK10091         88 -SSSYLMLAIGRLVSGFPHGAFFGVG-AIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV  165 (382)
T ss_pred             -hCcHHHHHHHHHHHHhhhHHHHHHH-HHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHH
Confidence             6678888888988888776654333 47788999999999999998888889999999888888887887777777777


Q ss_pred             HHHHHHhhheEEcccCC
Q psy15864        408 ISVVGTLYMYFVMPETE  424 (553)
Q Consensus       408 ~~~~~~~~~~~~~pet~  424 (553)
                      +.++..++.++++||.+
T Consensus       166 ~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        166 FNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHHhCCCCC
Confidence            66666665566778764

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.36  E-value=6.2e-12  Score=125.86  Aligned_cols=243  Identities=19%  Similarity=0.178  Sum_probs=149.3

Q ss_pred             hhhhhccC-cccccchhchhhhhHHHHHHHHHhhcccc-----------chHHHHHHHHHHHHHHHHHhcc-ccCCceee
Q psy15864        105 TYVAEITQ-PHLRGMLSATASMTTIFGTVSQLFLGSFL-----------HWRSAAILNLLFPILALCALYF-IPESPHWL  171 (553)
Q Consensus       105 ~~i~e~~p-~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----------gWr~~f~i~~i~~li~~i~~~~-lpEsp~~l  171 (553)
                      ++..|+++ +++|.+..++-+.+..+|.++..++...+           ||+...++.+++++++++++++ +.|.+.- 
T Consensus       135 al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~-  213 (467)
T COG2211         135 ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVE-  213 (467)
T ss_pred             hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCc-
Confidence            55677774 68999999999999999877654443222           8999999999888888777766 6664320 


Q ss_pred             eecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhh
Q psy15864        172 ISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGG  251 (553)
Q Consensus       172 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (553)
                       .+...+.                .                     .......+...++++.+....+..++.+......
T Consensus       214 -~~~~~~~----------------~---------------------~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~  255 (467)
T COG2211         214 -TQPTKTG----------------V---------------------KLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIR  255 (467)
T ss_pred             -cccCccc----------------c---------------------cccHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence             0000000                0                     0000011222333333322222222222222221


Q ss_pred             hHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      .....+|..+.   .+.+.. ..+.......+.+++.++..++++|+|+|+++.++.++.+++.+++.+.+       .+
T Consensus       256 ~s~~~yy~~y~---lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-------~~  325 (467)
T COG2211         256 GSIMVYYVTYV---LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-------AG  325 (467)
T ss_pred             hhhhheeEEEE---cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-------Cc
Confidence            22222222221   222222 22444555666677799999999999999999999999998888887743       34


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeecccccc-------chhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPN-------NIRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      +.+..++..++.+++.+.. .+++|+.++|+..-       +.-|...|+..++..++.+++..+.+.+++..|
T Consensus       326 ~~~l~~~~~~i~~~g~~~~-~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         326 SVVLIVVALIIAGVGTGIA-NPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             chHHHHHHHHHHHHHhhcc-ccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5556666666666666444 57788999988642       334666788888899999999999988886654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.35  E-value=1.3e-11  Score=132.13  Aligned_cols=206  Identities=12%  Similarity=0.137  Sum_probs=119.1

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-------------------------
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-------------------------  141 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-------------------------  141 (553)
                      -+|+++|+|.+  .+++.+|+.|++|+++|+++++++.++..+|.++|+++++++                         
T Consensus       177 ~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWi  256 (633)
T TIGR00805       177 VSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWI  256 (633)
T ss_pred             HHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHH
Confidence            48999999865  467889999999999999999999999999999998876542                         


Q ss_pred             -chHHHHHHHHHHHHHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15864        142 -HWRSAAILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQ  220 (553)
Q Consensus       142 -gWr~~f~i~~i~~li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (553)
                       +||..|++.++++++..+.++++|+..+-...+.+.+..+..  .... ..... ....   .....+           
T Consensus       257 GaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~--~~~~-~~~~~-~~~~---~~~~~~-----------  318 (633)
T TIGR00805       257 GAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETE--KLEK-SEDKS-RKKN---SDITKD-----------  318 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhh--cccc-ccccc-chhh---hhhHHH-----------
Confidence             277789888888887766566666542110000000000000  0000 00000 0000   000000           


Q ss_pred             CChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCChH-HHHHHHHH-HHHHHHHHHhhhhccc
Q psy15864        221 RRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLDPY-FATLLLGV-AELGGALLCVVLIHYT  297 (553)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~i-~~~~g~~~~g~l~dr~  297 (553)
                      ....++.++    ..+.++...+..+.....++.+..|+|.+++. .+++.... +...+..+ +.++|.+++|+++||+
T Consensus       319 ~~~~~~~Ll----~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~  394 (633)
T TIGR00805       319 FPKIIKRLL----CNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF  394 (633)
T ss_pred             HHHHHHHHH----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee
Confidence            001122233    33334444444555555666777788888864 56543332 33333343 5688999999999999


Q ss_pred             CC--cceeecchhHHHHHHHH
Q psy15864        298 GK--RPLALISTGGSAACFIV  316 (553)
Q Consensus       298 Gr--r~~l~~~~~~~~i~~~~  316 (553)
                      +.  |.++.+++++.+++.++
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       395 KLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             cccHHHHHHHHHHHHHHHHHH
Confidence            85  45555555555555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.35  E-value=4.1e-12  Score=127.62  Aligned_cols=163  Identities=13%  Similarity=-0.055  Sum_probs=122.6

Q ss_pred             hHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      ...+...+|.+.++.+.+... .+..+.+.++.+++.++.|+++||+|||++++.++...+.+.+ ....        ..
T Consensus         7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~--------~~   77 (368)
T TIGR00903         7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD--------PF   77 (368)
T ss_pred             HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH--------hc
Confidence            344556777777777776444 4677778899999999999999999999876544433333322 1110        24


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISV  410 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~  410 (553)
                      +.+.+++.+++.|++.+.. .+. ...++|.+|++.|++++++......+|..+++.+.+.+.+..+|+..+++.+++.+
T Consensus        78 ~~~~l~~~R~l~G~g~~~~-~~~-~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~  155 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFL-LNA-FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAA  155 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHH-HHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            6678888899998877643 233 35568999999999999999999999999999999988888888877777788777


Q ss_pred             HHHhhheEEcccCCC
Q psy15864        411 VGTLYMYFVMPETEG  425 (553)
Q Consensus       411 ~~~~~~~~~~pet~~  425 (553)
                      +..++.++++||+..
T Consensus       156 ~~~~~~~~~lp~~p~  170 (368)
T TIGR00903       156 AGIILVLAALPALPF  170 (368)
T ss_pred             HHHHHHHHHcCCCCC
Confidence            777777778898743

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11462 putative transporter; Provisional

Probab=99.34  E-value=1.7e-11  Score=127.12  Aligned_cols=238  Identities=14%  Similarity=0.068  Sum_probs=128.3

Q ss_pred             hhhhhccC-cccccchhchhhhhHHHHHHHHHhhccc-----------cchHHHHHHHHHHHHHHHHHhcc-ccCCceee
Q psy15864        105 TYVAEITQ-PHLRGMLSATASMTTIFGTVSQLFLGSF-----------LHWRSAAILNLLFPILALCALYF-IPESPHWL  171 (553)
Q Consensus       105 ~~i~e~~p-~~~Rg~~~~~~~~~~~lG~~l~~~l~~~-----------lgWr~~f~i~~i~~li~~i~~~~-lpEsp~~l  171 (553)
                      ++..|+++ +++|++..++...+..+|.++++++...           .+|+....+.+++++++.++.++ .+|.++- 
T Consensus       132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~-  210 (460)
T PRK11462        132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA-  210 (460)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC-
Confidence            66788887 7899999999998888887766544322           16888888877777666544443 5553210 


Q ss_pred             eecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhh
Q psy15864        172 ISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGG  251 (553)
Q Consensus       172 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (553)
                       .+.+                 ...                         ...++..++++.++.++...++..+.....
T Consensus       211 -~~~~-----------------~~~-------------------------~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~  247 (460)
T PRK11462        211 -PPTT-----------------TSM-------------------------REDLRDIWQNDQWRIVGLLTIFNILAVCVR  247 (460)
T ss_pred             -CccC-----------------CCH-------------------------HHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence             0000                 000                         011122222222322222222222222222


Q ss_pred             hHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDS  331 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  331 (553)
                      .....+|..++   .+..........+..++.+++.+++++++||+|+|.++..+.++.++..+++.+..       ..+
T Consensus       248 ~~~~~y~~~y~---~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~-------~~~  317 (460)
T PRK11462        248 GGAMMYYVTWI---LGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP-------MQA  317 (460)
T ss_pred             HhHhhhhhhhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-------hhH
Confidence            22223333322   22222223445567788899999999999999999876654443333333322211       112


Q ss_pred             ChhHHHHHHHHHHHHhhhhccccceeeccccc-----cchhh--hhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        332 PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFP-----NNIRA--TASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~Rg--~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      .+..++..++.+++. ....++++++++|...     +..|.  ...+...++..++..+++.+.+.+++..|
T Consensus       318 ~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        318 SITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            222333334445444 3333444566777765     22444  44466667888899999888888775544

>PRK10504 putative transporter; Provisional

Probab=99.34  E-value=9.6e-12  Score=130.10  Aligned_cols=174  Identities=10%  Similarity=-0.017  Sum_probs=131.6

Q ss_pred             HHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHH
Q psy15864        240 VTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA  318 (553)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  318 (553)
                      ..++..+......+.+..++|.+.++.|.+... .+..+...++.+++.++.|+++||+|||++++.+.++.+++.++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   93 (471)
T PRK10504         14 IVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA   93 (471)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence            333444445555566677888888888876443 3666677788899999999999999999998888777777766655


Q ss_pred             HHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        319 VYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                      +         ..+.+.+++.+++.+++.+... +...+++.|.+|++.|+++.++......++..++|.+.+.+.+..+|
T Consensus        94 ~---------~~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw  163 (471)
T PRK10504         94 L---------SGTLNELLLARVLQGVGGAMMV-PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASW  163 (471)
T ss_pred             H---------hCCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccH
Confidence            4         4566777788888888776654 34457889999999999999999999999999999999999888887


Q ss_pred             hhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        399 WGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      .+.+.+...+..+..++.....|+.
T Consensus       164 ~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        164 HWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            7777766665555555555555654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.34  E-value=7.3e-12  Score=129.24  Aligned_cols=156  Identities=11%  Similarity=-0.019  Sum_probs=120.6

Q ss_pred             HHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHH
Q psy15864        239 IVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVV  317 (553)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  317 (553)
                      ..+.+..+..........+..|.+.++.+.+.. ..+...+..++.+++.++.|+++||+|||++++++.++.+++.++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~  100 (426)
T PRK12307         21 FSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLS  100 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            333344444444455556666777677776643 3466777889999999999999999999999999999988888777


Q ss_pred             HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        318 AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      .+         ..+.+.+++++++.|++.+...... ..++.|.+|++.|+++.++......++.++++.+.+.+.+..+
T Consensus       101 ~~---------~~~~~~l~~~r~l~G~g~g~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~  170 (426)
T PRK12307        101 GL---------ASGVIMLTLSRFIVGMGMAGEYACA-STYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG  170 (426)
T ss_pred             HH---------HhHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence            66         4566788888888888776555444 4888999999999999999998888999999988888777777


Q ss_pred             chhhHHH
Q psy15864        398 LWGTLYF  404 (553)
Q Consensus       398 ~~~~~~~  404 (553)
                      |...+++
T Consensus       171 w~~~f~i  177 (426)
T PRK12307        171 WRAAFFV  177 (426)
T ss_pred             HHHHHHH
Confidence            6666554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.33  E-value=4.9e-11  Score=121.99  Aligned_cols=290  Identities=13%  Similarity=0.070  Sum_probs=169.5

Q ss_pred             hhhhhhhccCcccc--cchhchhhhhHHHHHHHHHhhcccc-------------------chHHHHHHHHHHHHHHHHH-
Q psy15864        103 VLTYVAEITQPHLR--GMLSATASMTTIFGTVSQLFLGSFL-------------------HWRSAAILNLLFPILALCA-  160 (553)
Q Consensus       103 ~~~~i~e~~p~~~R--g~~~~~~~~~~~lG~~l~~~l~~~l-------------------gWr~~f~i~~i~~li~~i~-  160 (553)
                      .-++++|.+|+++|  +.+.++.+.+.++|.++|+.+++..                   +-|+.|++.+++.++..++ 
T Consensus       135 ~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t  214 (477)
T TIGR01301       135 CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIA  214 (477)
T ss_pred             HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            34889999998865  6899999998999999988877542                   4578899988877777544 


Q ss_pred             hccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHH
Q psy15864        161 LYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIV  240 (553)
Q Consensus       161 ~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (553)
                      +++++|.|...  .++..+  +   ..+. .+.......+.                     ..++.+.+   ..+.+..
T Consensus       215 ~~~v~E~~~~~--~~~~~~--~---~~~~-~~~~~~~~~~~---------------------~i~~~~~~---mP~~m~~  262 (477)
T TIGR01301       215 LSAVKENPLIG--SDDFIN--S---EAAP-PSKHGEEAFFG---------------------ELFGAFKY---LPRPVWI  262 (477)
T ss_pred             eeeeeccCCCc--cccchh--h---hccc-ccccchhhhHH---------------------HHHHHHHH---CCHHHHH
Confidence            45588876311  000000  0   0000 00000000001                     11111111   1222233


Q ss_pred             HHHHHHHhhhhhHHHHhhHHHHHHh--hCCCC-------C----hHHHHHHHHHHHHHHHHHHhhhhcccCC-cceeecc
Q psy15864        241 TSLFFIGQFGGMTTLQTYAVGIFES--IHAPL-------D----PYFATLLLGVAELGGALLCVVLIHYTGK-RPLALIS  306 (553)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~-------~----~~~~~~~~~i~~~~g~~~~g~l~dr~Gr-r~~l~~~  306 (553)
                      .++..++.+.+++.+..|.+.+..+  ++.+.       +    ..+..++.++...+.+++..++.+++|+ |.+..++
T Consensus       263 l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s  342 (477)
T TIGR01301       263 LLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIV  342 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            3333444444555555566655543  11111       1    1244555666667777888889999995 5665777


Q ss_pred             hhHHHHHHHHHHHHHHhhcc--c---------C-CCCChhHHHHHHHHHHHHhhhhccccceeeccccccc--hhhhhhh
Q psy15864        307 TGGSAACFIVVAVYAQFHLS--Y---------G-WDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNN--IRATASG  372 (553)
Q Consensus       307 ~~~~~i~~~~~~~~~~~~~~--~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~Rg~~~~  372 (553)
                      .++.+++++...+...+...  .         + ....+..++...+.|+..+. ...+|++++++..|.+  ..|..+|
T Consensus       343 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mg  421 (477)
T TIGR01301       343 NIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMG  421 (477)
T ss_pred             HHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhh
Confidence            77777777666544321100  0         0 00024555666666776644 4578899999999854  4488899


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhccc--hhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        373 ASGSSSYIFAFAVNKLYYPMLDTFHL--WGTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       373 ~~~~~~~~~~~i~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      +.|.+..+.+++.....|.+....+.  ...+.+.++..++++++.++.+|.++.
T Consensus       422 ilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       422 VLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999888876655542  234444455556666777778887653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.33  E-value=1.5e-10  Score=112.53  Aligned_cols=272  Identities=11%  Similarity=0.053  Sum_probs=175.4

Q ss_pred             hhhhhccCcccccchhchhhhhHHHHHHHHHhhc------c----------------ccchHHHHHHHHHHHHHH-HHHh
Q psy15864        105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG------S----------------FLHWRSAAILNLLFPILA-LCAL  161 (553)
Q Consensus       105 ~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~------~----------------~lgWr~~f~i~~i~~li~-~i~~  161 (553)
                      +++.+..++++-++..++-.....+|.++.-++.      +                ...=|..+.+.++.-++. +.++
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            7788888888888887776555555555443332      1                004688888877776665 5566


Q ss_pred             ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHH
Q psy15864        162 YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVT  241 (553)
Q Consensus       162 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (553)
                      +++++.++-.   ....               ......+++....                  ++..+++..    +..+
T Consensus       218 ~~v~~~~~~~---~~~~---------------~~l~~g~k~L~~t------------------~k~i~~~~~----i~~F  257 (438)
T COG2270         218 LNVHDAEKIS---SPPP---------------TALRNGFKELKST------------------FKEIRGRKN----LVLF  257 (438)
T ss_pred             hccccccccc---ccch---------------HHHHHHHHHHHHH------------------HHHHhcccc----hHHH
Confidence            6677655310   0000               0111112222221                  222222222    2233


Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHH-hhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFE-SIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                      .+..+.+..+...+..+...+-. .+|.+.. .........+.+++|++++|++.+|+|-|+++.+++++..+.++...+
T Consensus       258 LiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~  337 (438)
T COG2270         258 LIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIF  337 (438)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHH
Confidence            33344444555555555555544 5566543 346666788999999999999999999999999888877777666555


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccch
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW  399 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~  399 (553)
                               ......+++..++.+.+.|..... .-.|.++++|++.-+..+|+.+..+...++++|++++.+.+-++..
T Consensus       338 ---------~~~~~~f~i~gll~g~s~G~~qA~-SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~  407 (438)
T COG2270         338 ---------LEGELDFWILGLLVGTSLGGAQAS-SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS  407 (438)
T ss_pred             ---------ccccHHHHHHHHHHHHhcchHHHH-HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence                     334445555556667666555443 3589999999999999999999999999999999999998887766


Q ss_pred             hhHHHHHHHHHHHHhhheEEcccCCCC
Q psy15864        400 GTLYFYAAISVVGTLYMYFVMPETEGR  426 (553)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~pet~~~  426 (553)
                      +.-....++.+++.++.+..+|..+.+
T Consensus       408 r~g~~~i~vll~iGl~~L~~v~~~~~~  434 (438)
T COG2270         408 RAGVLSIIVLLLIGLLLLLRVKVPGRR  434 (438)
T ss_pred             hhHHHHHHHHHHhhHhhEEeecCCCCc
Confidence            666555566666666667777766433

>KOG3764|consensus

Probab=99.33  E-value=5.9e-13  Score=127.10  Aligned_cols=269  Identities=9%  Similarity=-0.002  Sum_probs=162.8

Q ss_pred             ccccccccccch--hhhhhhhhccCcc-cccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhc
Q psy15864         90 GTFLYKMAAPLV--LVLTYVAEITQPH-LRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALY  162 (553)
Q Consensus        90 gr~~~G~ga~~~--~~~~~i~e~~p~~-~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~  162 (553)
                      .|.++|+|.+..  ...+++++.+|.+ +|++++|+...+.++|.++||.+++.+    |.+.+|++.++++++-..+.+
T Consensus       165 AR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l  244 (464)
T KOG3764|consen  165 ARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQL  244 (464)
T ss_pred             HHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHH
Confidence            456666665533  4458899999976 589999999999999999999999987    999999999999999887777


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      ++-|.-+-     +.+                                       .......+..+...++..   +..+
T Consensus       245 ~vi~p~~~-----~~~---------------------------------------~~~~~~~~~~Ll~dP~I~---~~ag  277 (464)
T KOG3764|consen  245 LVIEPTEM-----DPD---------------------------------------STEQGTPMWSLLMDPYIL---LIAG  277 (464)
T ss_pred             heeCcccc-----Ccc---------------------------------------ccccCccHHHHHhCchHh---hhhc
Confidence            75332110     000                                       000112222233232221   1111


Q ss_pred             HHHHHhhhhhHHHHhhHHHHH-HhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcce--eecchhHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIF-ESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPL--ALISTGGSAACFIVVA  318 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~--l~~~~~~~~i~~~~~~  318 (553)
                      ...++. .....+-..++.+. +....+. ...+..+..++..++|+.+.|.++||++.-+.  .+.++++..+++....
T Consensus       278 ai~~~n-~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP  356 (464)
T KOG3764|consen  278 AITFSN-SSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIP  356 (464)
T ss_pred             chhhcc-chHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhH
Confidence            112222 22222222233333 3333222 33455667788899999999999999993332  2223232222222222


Q ss_pred             HHHHhhcccCCCCChhHHHHHHHHHHH---Hhhhhccccceeeccccccc---hhhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        319 VYAQFHLSYGWDSPLVPTVFLVLAAFL---THICIRLLPWMLIGEVFPNN---IRATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~p~~---~Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      +         .++...+++..+..+++   ......|.. .++.|.....   .-|...++......++.+++|.+.+.+
T Consensus       357 ~---------~~~~~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~i  426 (464)
T KOG3764|consen  357 F---------ATSIAQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSL  426 (464)
T ss_pred             h---------hhhHHHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchh
Confidence            2         33333344333333333   333333443 4445544444   567888999999999999999999999


Q ss_pred             HhhccchhhHHHHHHHHHHHHhhh
Q psy15864        393 LDTFHLWGTLYFYAAISVVGTLYM  416 (553)
Q Consensus       393 ~~~~g~~~~~~~~~~~~~~~~~~~  416 (553)
                      .+..|+.|...++++..++...++
T Consensus       427 v~~iGF~wl~~iig~~n~iyapvl  450 (464)
T KOG3764|consen  427 VEAIGFEWLMTIIGILNLIYAPVL  450 (464)
T ss_pred             eeehhHHHHHHHHHHHHHHHHHHH
Confidence            999998888888777777666544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.33  E-value=1.3e-11  Score=126.55  Aligned_cols=164  Identities=13%  Similarity=0.087  Sum_probs=123.7

Q ss_pred             hhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCC
Q psy15864        251 GMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGW  329 (553)
Q Consensus       251 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  329 (553)
                      ....+...++.+.++.+.+... .+......++.+++.++.|+++||+|||++++++.++.+++.++...         .
T Consensus        28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~---------~   98 (406)
T PRK15402         28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL---------A   98 (406)
T ss_pred             hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH---------H
Confidence            3444444556666777765433 46667788899999999999999999999998888888777776655         4


Q ss_pred             CCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHH
Q psy15864        330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAIS  409 (553)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~  409 (553)
                      .+.+.+++.+++.+++.+... +..+.++.|.+|++.|+.+.++......++..++|.+.+.+.+..+|.+.+++.+++.
T Consensus        99 ~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~  177 (406)
T PRK15402         99 QSIEQFTLLRFLQGIGLCFIG-AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALA  177 (406)
T ss_pred             ccHHHHHHHHHHHHhHhhhHH-HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence            456677777787777665443 3445788899999999998888888888888999998888888788777777777776


Q ss_pred             HHHHhhheEEcccCC
Q psy15864        410 VVGTLYMYFVMPETE  424 (553)
Q Consensus       410 ~~~~~~~~~~~pet~  424 (553)
                      ++..+..++..||++
T Consensus       178 ~~~~~~~~~~~~~~~  192 (406)
T PRK15402        178 ALSFFGLWRAMPETA  192 (406)
T ss_pred             HHHHHHHHHhCCCCC
Confidence            666665556678764

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.33  E-value=1.7e-11  Score=128.04  Aligned_cols=120  Identities=12%  Similarity=-0.020  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccc
Q psy15864        274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLL  353 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      ....+..++.+++.++.++++||+|+|+.+.+++++.+++.+.+......    ...+.+.+++..++.+++.+... +.
T Consensus       270 ~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~l~g~~~~~~~-~~  344 (473)
T PRK10429        270 YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA----APHNALLIVIAGILLNIGTALFW-VL  344 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc----CchhHHHHHHHHHHHHHHHHHHH-HH
Confidence            34445567888999999999999999999887777666555444332110    02233444455555555555444 44


Q ss_pred             cceeeccccc-------cchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        354 PWMLIGEVFP-------NNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       354 ~~~~~~e~~p-------~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                      ++++++|+.+       .+..|...|+..++..++..+++.+.+.+++..|+
T Consensus       345 ~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        345 QVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4588888855       23345577888888999999999999988765543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.32  E-value=2.2e-11  Score=127.08  Aligned_cols=165  Identities=10%  Similarity=-0.021  Sum_probs=115.5

Q ss_pred             HHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHh
Q psy15864        245 FIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQF  323 (553)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~  323 (553)
                      ++..+...+....+.|.+.++.+.+... .+..+...++.+++.+++|+++||+|||+++.++.++.+++.++.++    
T Consensus        45 ~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~----  120 (476)
T PLN00028         45 FFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL----  120 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH----
Confidence            3334444455566777787778876433 35566677888999999999999999999988877777777666555    


Q ss_pred             hcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh----h----
Q psy15864        324 HLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD----T----  395 (553)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~----~----  395 (553)
                           ..+.+.+++.+++.|++.+.. .+. ..+++|.+|++.||.++|+.+....+++.+++.+.+.+..    .    
T Consensus       121 -----~~s~~~l~~~r~l~G~~~~~~-~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~  193 (476)
T PLN00028        121 -----VSSATGFIAVRFFIGFSLATF-VSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPS  193 (476)
T ss_pred             -----hcCHHHHHHHHHHHHHHHHhh-HHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence                 445666777777777766433 333 3578899999999999999988777777777666654432    1    


Q ss_pred             -ccchhhHHHHHHHHHHHHhhheEEc
Q psy15864        396 -FHLWGTLYFYAAISVVGTLYMYFVM  420 (553)
Q Consensus       396 -~g~~~~~~~~~~~~~~~~~~~~~~~  420 (553)
                       .+|.+.+++.+++.++..++.+++.
T Consensus       194 ~~gWr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        194 FTAWRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence             3666777776766666555554443

>KOG0252|consensus

Probab=99.32  E-value=1.5e-12  Score=126.58  Aligned_cols=151  Identities=15%  Similarity=0.059  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccc
Q psy15864        274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLL  353 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      .+..+..+|.++|.++.|++.|++|||+++...+++++++.++.++...  .+.+..-.+++.+.++++|++.|.=+ |+
T Consensus        88 ~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~--~~~~~~~m~~L~~~R~~LGiGIGGDY-Pl  164 (538)
T KOG0252|consen   88 LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG--TTSPLGVMMTLCFFRFLLGIGIGGDY-PL  164 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC--CCCCcchhhHHHHHHHHhhccccCCC-cc
Confidence            5666778999999999999999999999999999999999885554211  11111234556778889998886665 66


Q ss_pred             cceeeccccccchhhhhhhHHHHHHHHH---HHHHHHHhHHHHhh-----------ccchhhHHHHHHHHHHHHhhheEE
Q psy15864        354 PWMLIGEVFPNNIRATASGASGSSSYIF---AFAVNKLYYPMLDT-----------FHLWGTLYFYAAISVVGTLYMYFV  419 (553)
Q Consensus       354 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~~---~~i~~~~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~  419 (553)
                      ..+.++|..-.+.||+..+....+...|   +.+...+.....+.           -+.|+..+.+++++++..+..-+.
T Consensus       165 SAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~  244 (538)
T KOG0252|consen  165 SATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLK  244 (538)
T ss_pred             hHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            6699999999999999887655544333   33333333333221           134777778888888888888888


Q ss_pred             cccCCCCC
Q psy15864        420 MPETEGRT  427 (553)
Q Consensus       420 ~pet~~~~  427 (553)
                      +|||+...
T Consensus       245 M~Et~~Y~  252 (538)
T KOG0252|consen  245 MPETARYT  252 (538)
T ss_pred             CCcchhHH
Confidence            99996543

>KOG4686|consensus

Probab=99.32  E-value=3.7e-11  Score=109.37  Aligned_cols=256  Identities=12%  Similarity=0.026  Sum_probs=148.0

Q ss_pred             ccccccccccccchhh--hhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----------------c-hHHHHH
Q psy15864         88 EKGTFLYKMAAPLVLV--LTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----------------H-WRSAAI  148 (553)
Q Consensus        88 ~~gr~~~G~ga~~~~~--~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----------------g-Wr~~f~  148 (553)
                      .-|||++|+|+....+  -.|+.-|+..++.+.++|+.....-+|..+-..+..++                | |-..-.
T Consensus       140 ~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~  219 (459)
T KOG4686|consen  140 LAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEV  219 (459)
T ss_pred             HhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            4699999999974433  48899999999999999999888888876544433332                1 111111


Q ss_pred             HHHHHHHHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhh
Q psy15864        149 LNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMY  228 (553)
Q Consensus       149 i~~i~~li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (553)
                      ......+++++..-+.            .+.|++.+.+-.+.                           ..+    ...+
T Consensus       220 ~tc~~slical~lg~~------------D~rAerilh~e~g~---------------------------~Ge----~pkL  256 (459)
T KOG4686|consen  220 KTCKQSLICALSLGLS------------DDRAERILHLEEGF---------------------------LGE----EPKL  256 (459)
T ss_pred             HHHHHHHHHHHHhhhh------------hhHHHHHHhhhcCc---------------------------ccC----Cccc
Confidence            1111112221111111            11122221111000                           000    0001


Q ss_pred             hhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHH-hhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecc
Q psy15864        229 MRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFE-SIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALIS  306 (553)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~  306 (553)
                      ....-..+.++..++..+.++.....+....|.+++ ..|++... ..+.+.......+.+++.|.++|++|++...+.+
T Consensus       257 tdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~  336 (459)
T KOG4686|consen  257 TDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS  336 (459)
T ss_pred             ccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence            111111122233333344444455555566666664 46776443 3555566666778888999999999998777665


Q ss_pred             hhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHH
Q psy15864        307 TGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVN  386 (553)
Q Consensus       307 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~  386 (553)
                      ..+..+..-...++          +.+-.++.+.+.|..+.....+. |..++-+.|.+.-|++.|.++.+.+++-.+.|
T Consensus       337 a~~~tl~~H~~l~F----------t~lsPy~~m~~lGLsysllAcsl-WP~va~~vpE~qLGTaygf~qsIqNLgla~i~  405 (459)
T KOG4686|consen  337 ACILTLLGHSGLFF----------TFLSPYTSMTFLGLSYSLLACSL-WPCVASLVPEEQLGTAYGFIQSIQNLGLAFIP  405 (459)
T ss_pred             HHHHHHHHhhhHHh----------hhccHHHHHHHHhhhHHHHHHHH-hhhhhhhCCHHHhcchHHHHHHHHhhhhhHHh
Confidence            54444333222221          12334555566666554443223 56778889999999999999999999999999


Q ss_pred             HHhHHHHhhcc
Q psy15864        387 KLYYPMLDTFH  397 (553)
Q Consensus       387 ~~~~~~~~~~g  397 (553)
                      .+.+.+.+.-+
T Consensus       406 Iiag~i~d~~g  416 (459)
T KOG4686|consen  406 IIAGFIADGDG  416 (459)
T ss_pred             hhhheeecCCC
Confidence            99999887655

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.32  E-value=6.9e-12  Score=126.94  Aligned_cols=165  Identities=9%  Similarity=-0.019  Sum_probs=127.5

Q ss_pred             hhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccC
Q psy15864        250 GGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYG  328 (553)
Q Consensus       250 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  328 (553)
                      .....+....|.+.+..+.+.. ..+..++..++.+++.++.|+++||+|||++++++.++.+++.+++.+         
T Consensus         9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---------   79 (379)
T TIGR00881         9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF---------   79 (379)
T ss_pred             HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH---------
Confidence            3344555666777777777643 457777888999999999999999999999999999888888887776         


Q ss_pred             CCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHH-HhHHHHhhccchhhHHHHHH
Q psy15864        329 WDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNK-LYYPMLDTFHLWGTLYFYAA  407 (553)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~-~~~~~~~~~g~~~~~~~~~~  407 (553)
                      ..+.+.+++.+++.+++.+... +...+++.|.+|++.|+.+.++.+....+++.+++. +.+.+....+|...+++.++
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (379)
T TIGR00881        80 STSLWVMAALWALNGIFQGMGW-PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGI  158 (379)
T ss_pred             hhhHHHHHHHHHHHHhhccccC-CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence            4567777888888887766554 444589999999999999999999999999999984 55555566676666766676


Q ss_pred             HHHHHHhhheEEcccCC
Q psy15864        408 ISVVGTLYMYFVMPETE  424 (553)
Q Consensus       408 ~~~~~~~~~~~~~pet~  424 (553)
                      +.++..++.+++.||++
T Consensus       159 ~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       159 IAIIVSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHHHHHheeeCCCc
Confidence            66666666677777754

>PRK03699 putative transporter; Provisional

Probab=99.30  E-value=2.9e-11  Score=123.37  Aligned_cols=171  Identities=10%  Similarity=0.003  Sum_probs=126.2

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAAC  313 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~  313 (553)
                      ++..+.+++.++........+...+|.+.++.+.+.. ..+......++.+++.+++|+++||+|||+++.++.++.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~   85 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILA   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3444444444444444456677778888888777643 346667788899999999999999999999988888888777


Q ss_pred             HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864        314 FIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML  393 (553)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~  393 (553)
                      .++..+         .++.+.+++.+++.+++.+...... ..++.|.+|++.|+.+.++.+....+++.++|.+.+.+.
T Consensus        86 ~~l~~~---------~~~~~~~~~~~~l~G~~~g~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (394)
T PRK03699         86 VAGLMF---------SHSLALFSIAMFVLGVVSGITMSIG-TFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL  155 (394)
T ss_pred             HHHHHH---------cchHHHHHHHHHHHHHhhHhhccch-hHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777665         4566777778888888776665444 478899999999999998888888888889998888776


Q ss_pred             h-hccchhhHHHHHHHHHHHHhh
Q psy15864        394 D-TFHLWGTLYFYAAISVVGTLY  415 (553)
Q Consensus       394 ~-~~g~~~~~~~~~~~~~~~~~~  415 (553)
                      . ..+|...+.+.+++.++..++
T Consensus       156 ~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        156 ARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             hccccHHHHHHHHHHHHHHHHHH
Confidence            5 456666666666555544433

>KOG2615|consensus

Probab=99.30  E-value=1.4e-11  Score=117.21  Aligned_cols=270  Identities=14%  Similarity=0.080  Sum_probs=143.7

Q ss_pred             ccccccccccc-chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhccccch------HHH----HHHHHHHHHH-
Q psy15864         89 KGTFLYKMAAP-LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHW------RSA----AILNLLFPIL-  156 (553)
Q Consensus        89 ~gr~~~G~ga~-~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~lgW------r~~----f~i~~i~~li-  156 (553)
                      -.|++.|+.-+ +.++-++++|+++++.|+..++.+..++++|.++||.+|+++.-      +.+    -++..+++.. 
T Consensus       126 ~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~  205 (451)
T KOG2615|consen  126 LARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGD  205 (451)
T ss_pred             HHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHH
Confidence            35788888754 56788999999999999999999999999999999999988711      112    2333333333 


Q ss_pred             HHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhH
Q psy15864        157 ALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLP  236 (553)
Q Consensus       157 ~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (553)
                      .+.+.+++|||-+.   +++.++.....+..       +...+..... .               ......+.+.+...+
T Consensus       206 v~~~~~~lpETL~~---rk~~~~~~~~~~~~-------~~~~~~~~~~-~---------------~~~v~~lrn~p~~~~  259 (451)
T KOG2615|consen  206 VTFFPWFLPETLPL---RKRNDEHSTLQEAA-------DDRLALLKFA-R---------------IFKVAALRNPPLLDF  259 (451)
T ss_pred             HHHHHHhCCccccc---hhhcccccchhhhh-------hhhhhhcchh-h---------------hhhhhhhcCccccch
Confidence            34556779998432   11111100000000       0000000000 0               001111122222221


Q ss_pred             --HHHHHHHHHHHhhhhhHHHHhhHHHHH-HhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccC--CcceeecchhHH
Q psy15864        237 --YAIVTSLFFIGQFGGMTTLQTYAVGIF-ESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTG--KRPLALISTGGS  310 (553)
Q Consensus       237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~G--rr~~l~~~~~~~  310 (553)
                        .+..+.+..+.+...+..+.++.+.+. +..|++. ++....+..++++.+..+...+..++..  -+..+..++..+
T Consensus       260 i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~  339 (451)
T KOG2615|consen  260 ISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLI  339 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHH
Confidence              111122222222222222222322221 2344443 3334444445554444444444555443  222222222222


Q ss_pred             HHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhH
Q psy15864        311 AACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYY  390 (553)
Q Consensus       311 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~  390 (553)
                      .-..+++..         .....+++++..+..+..+.....+. ..+....|+..||++.|+....+.++-+++|.+.|
T Consensus       340 vP~~llls~---------~~~~~~l~~~s~l~sf~~A~~vt~Lt-~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g  409 (451)
T KOG2615|consen  340 VPAFLLLSL---------ARTPVVLYLGSTLKSFSTASVVTCLT-SLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSG  409 (451)
T ss_pred             HHHHHHHhc---------cccchhhhHHHHHHHHHHHHhhHHHH-HHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhh
Confidence            111111111         45566677777777776666665554 78888999999999999999999999999999888


Q ss_pred             HHHh
Q psy15864        391 PMLD  394 (553)
Q Consensus       391 ~~~~  394 (553)
                      .+..
T Consensus       410 ~i~~  413 (451)
T KOG2615|consen  410 VIFS  413 (451)
T ss_pred             eeEE
Confidence            7654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.30  E-value=8.4e-12  Score=125.01  Aligned_cols=162  Identities=13%  Similarity=0.031  Sum_probs=122.3

Q ss_pred             hHHHHhhHH-HHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCC
Q psy15864        252 MTTLQTYAV-GIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGW  329 (553)
Q Consensus       252 ~~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  329 (553)
                      ........| .+.++.+.+. +..+...+..++.+++.++.|+++||+|||++++++.++.+++.++..+         .
T Consensus        12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~---------~   82 (352)
T PF07690_consen   12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF---------A   82 (352)
T ss_dssp             HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------H
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh---------h
Confidence            344445555 5555666543 4557777888999999999999999999999999988888888544443         3


Q ss_pred             CCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHH
Q psy15864        330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAIS  409 (553)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~  409 (553)
                      .+.+.+++.+++.+++.+...... ..++.|.+|++.|+.+.++......++..+++.+.+.+.+..+|...+++.+++.
T Consensus        83 ~~~~~~~~~~~l~g~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~  161 (352)
T PF07690_consen   83 SNFWLLLIARFLLGIGSGFFSPAS-NALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS  161 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred             hhHHHHhhhccccccccccccccc-cccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence            455677888888888776665444 5899999999999999999999999999999999998887778777777777777


Q ss_pred             HHHHhhheEEcccC
Q psy15864        410 VVGTLYMYFVMPET  423 (553)
Q Consensus       410 ~~~~~~~~~~~pet  423 (553)
                      ++..++..+++++.
T Consensus       162 ~~~~il~~~~~~~~  175 (352)
T PF07690_consen  162 LIAAILFILFLPEP  175 (352)
T ss_dssp             HHHHHHHHCCC---
T ss_pred             hhhhhhHhhhhhhc
Confidence            77766543444443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.30  E-value=3.2e-11  Score=126.59  Aligned_cols=176  Identities=11%  Similarity=-0.030  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh--HHH-----HHHHHHHHHHHHHHHhhhhcccCCcceeecchhHH
Q psy15864        238 AIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP--YFA-----TLLLGVAELGGALLCVVLIHYTGKRPLALISTGGS  310 (553)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~-----~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~  310 (553)
                      ++...+.++.....+..+.+..|.+-+....+.+.  .+.     ..+..++..+|+++.|+++||+|||+++.++++++
T Consensus        18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~   97 (490)
T PRK10642         18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIM   97 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            33344444444444555555666555544322211  111     24455778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCh--------hHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHH
Q psy15864        311 AACFIVVAVYAQFHLSYGWDSPL--------VPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFA  382 (553)
Q Consensus       311 ~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~  382 (553)
                      +++.+++++         .++..        .+++++++.|++.+..+.+. .++++|.+|++.||...++......+|.
T Consensus        98 ~i~~~~~a~---------~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~-~~~~~e~~p~~~Rg~~~~~~~~~~~~G~  167 (490)
T PRK10642         98 SISTFCIGL---------IPSYATIGIWAPILLLLCKMAQGFSVGGEYTGA-SIFVAEYSPDRKRGFMGSWLDFGSIAGF  167 (490)
T ss_pred             HHHHHHHHh---------cccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHH-HHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            999988887         33432        36778889898887776555 4899999999999999888877666666


Q ss_pred             HHHHHHhHHHH--------hhccchhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        383 FAVNKLYYPML--------DTFHLWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       383 ~i~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      .+++.+...+.        ..++|+..+++.+ +..++.+++..++||+.
T Consensus       168 ~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~-~~~l~~~~~~~~~~esp  216 (490)
T PRK10642        168 VLGAGVVVLISTIVGEANFLDWGWRIPFFIAL-PLGIIGLYLRHALEETP  216 (490)
T ss_pred             HHHHHHHHHHHHhcCHHHhcCccHHHHHHHHH-HHHHHHHHHHHcCCCCh
Confidence            66665543332        2456666665544 33334444456788873

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.30  E-value=2.9e-11  Score=123.41  Aligned_cols=163  Identities=13%  Similarity=0.024  Sum_probs=121.5

Q ss_pred             hHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      .......+|.+.++.+.+... .+......++.+++.++.|+++||+|||+.++++.++.+++.++...         ..
T Consensus        24 ~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~---------~~   94 (394)
T PRK11652         24 QTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF---------AH   94 (394)
T ss_pred             HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH---------Hc
Confidence            334444567777777776443 46677788999999999999999999999998888887777776654         44


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISV  410 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~  410 (553)
                      +.+.+++.+++.+++.+... +....+..|.++.+.|+.+.++......++..++|.+.+.+.+..+|...+.+.+++.+
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~  173 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGG-VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGA  173 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence            56677777888777665443 33346778888888899999988888888888999888888887787777777666665


Q ss_pred             HHHhhheEEcccCC
Q psy15864        411 VGTLYMYFVMPETE  424 (553)
Q Consensus       411 ~~~~~~~~~~pet~  424 (553)
                      +..++.+++.||++
T Consensus       174 ~~~~~~~~~~~~~~  187 (394)
T PRK11652        174 GVTFSMARWMPETR  187 (394)
T ss_pred             HHHHHHHHhCCccC
Confidence            55555556678764

>PTZ00207 hypothetical protein; Provisional

Probab=99.30  E-value=5.4e-11  Score=124.29  Aligned_cols=322  Identities=13%  Similarity=0.093  Sum_probs=177.7

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHH-HHhhcccc--chHHHHHHHHHHHHHHHHHh-cc
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVS-QLFLGSFL--HWRSAAILNLLFPILALCAL-YF  163 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l-~~~l~~~l--gWr~~f~i~~i~~li~~i~~-~~  163 (553)
                      .|++.|+|.+  .+.+..++.+|+| ++||++.++..++.++|.++ +++...++  +|++.|++.+++++++.+++ ++
T Consensus       126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~  204 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVF  204 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            4667777764  3356677889986 78999999999999999986 44444444  89999988888887764433 33


Q ss_pred             --ccCCceeeeecCChHHHHHHHHHHcCC----CCCc--ch------------------------------HHHHHH--H
Q psy15864        164 --IPESPHWLISQGRMQEASASLCWLRGW----VTPD--KV------------------------------QTELSQ--I  203 (553)
Q Consensus       164 --lpEsp~~l~~~~~~~~a~~~l~~~~~~----~~~~--~~------------------------------~~~~~~--~  203 (553)
                        .|++|++...+++.++.++..++..+.    ...+  ..                              ......  +
T Consensus       205 vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~  284 (591)
T PTZ00207        205 MRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVI  284 (591)
T ss_pred             eeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence              466666654444444443332222111    0000  00                              000000  0


Q ss_pred             --HHHHH-----HHHHH----h-c----------------CCCC-------C-CChhhh-hhhhhcchhHHHHHHHHHHH
Q psy15864        204 --TKAIE-----ESELK----R-L----------------GKDG-------Q-RRPNYR-MYMRRTFLLPYAIVTSLFFI  246 (553)
Q Consensus       204 --~~~~~-----~~~~~----~-~----------------~~~~-------~-~~~~~~-~~~~~~~~~~~~~~~~~~~~  246 (553)
                        .-...     .....    . .                ..+.       . ..+... .+... ....=+|+.+..++
T Consensus       285 ~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~-l~~~d~Wll~~~~~  363 (591)
T PTZ00207        285 VLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEG-LKTARLWCLLWSIF  363 (591)
T ss_pred             HHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHH-HhchhHHHHHHHHH
Confidence              00000     00000    0 0                0000       0 000000 11111 11122344444444


Q ss_pred             HhhhhhHHHHhhHHHHHHhh-CCCCCh--H-HHHHHHHHHHHHHHHHHhhhhcccCCcc----e-----eecchhHHHHH
Q psy15864        247 GQFGGMTTLQTYAVGIFESI-HAPLDP--Y-FATLLLGVAELGGALLCVVLIHYTGKRP----L-----ALISTGGSAAC  313 (553)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~-g~~~~~--~-~~~~~~~i~~~~g~~~~g~l~dr~Grr~----~-----l~~~~~~~~i~  313 (553)
                      +..+.-.....-+.++.+.. |.+.+.  . ...++.+++..+|-+.+|++....-+|+    +     +.+..+ +.++
T Consensus       364 cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~  442 (591)
T PTZ00207        364 CCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIIT  442 (591)
T ss_pred             HhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHH
Confidence            44444455556666777776 663322  2 2677889999999999998873322222    1     112222 3333


Q ss_pred             HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHH-HHHhHHH
Q psy15864        314 FIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAV-NKLYYPM  392 (553)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~-~~~~~~~  392 (553)
                      .+++++         ......+++..++.|++.|..+...+ +.++|+|. +.-|+-.-+.....-+|+++. ..+.|.+
T Consensus       443 ~lll~~---------~~p~~~L~~~~~lvg~~~G~~~~~~~-~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~  511 (591)
T PTZ00207        443 MLTLFL---------TLPKAALPLPYFIAAFANGFMAATIA-LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEW  511 (591)
T ss_pred             HHHHHH---------HCCccHhHHHHHHHHHHhhHhHHHHH-HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence            333333         22225678888899999988887765 88899999 666887776666666666665 4556666


Q ss_pred             Hhhc-------------cchhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        393 LDTF-------------HLWGTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       393 ~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      ++.-             -...+++++++++++.+++...+.-+|++
T Consensus       512 Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~  557 (591)
T PTZ00207        512 YTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR  557 (591)
T ss_pred             HHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence            6432             13557788888888887776665555543

>PRK10054 putative transporter; Provisional

Probab=99.30  E-value=2.3e-11  Score=123.91  Aligned_cols=168  Identities=9%  Similarity=-0.014  Sum_probs=118.0

Q ss_pred             HHHhhhhhHHHHhhHHHHHH-hhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHH
Q psy15864        245 FIGQFGGMTTLQTYAVGIFE-SIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQ  322 (553)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  322 (553)
                      .+....+......+++.++. ..|.+. +..+..++..++.+++.++.|+++||+|||++++++.++.+++.+++.+   
T Consensus        16 ~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~---   92 (395)
T PRK10054         16 SLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL---   92 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH---
Confidence            34444455555556666554 457654 3346666777888999999999999999999998888877777766655   


Q ss_pred             hhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhH
Q psy15864        323 FHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTL  402 (553)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~  402 (553)
                            .++.+.+++++++.+.+.+.. .+....+..|.+|++.|+++.|+.+....++..++|.+.+.+.. .+|...+
T Consensus        93 ------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f  164 (395)
T PRK10054         93 ------VNNVTLVVLFFALINCAYSVF-STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPF  164 (395)
T ss_pred             ------HhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHH
Confidence                  334455555555555544333 34445788999999999999999999999999999999888764 5766666


Q ss_pred             HHHHHHHHHHHhhheEEcccC
Q psy15864        403 YFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~pet  423 (553)
                      .+.+++.++..++.++++|+.
T Consensus       165 ~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        165 WLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            666655555544454556654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.28  E-value=4.4e-11  Score=125.07  Aligned_cols=146  Identities=18%  Similarity=0.045  Sum_probs=110.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhh
Q psy15864        271 DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICI  350 (553)
Q Consensus       271 ~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (553)
                      +..+..++..++.+++.++.|+++||+|||++++++.++.+++.++..+...      ..+.+.+++.+++.|++.+...
T Consensus        72 ~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~~~~~~~  145 (481)
T TIGR00879        72 LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF------ALSVEMLIVGRVLLGIGVGIAS  145 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHhhhhHHH
Confidence            3457777888999999999999999999999999988888888777755221      2233467788888888776665


Q ss_pred             ccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHh---HHHHhhccchhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        351 RLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLY---YPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       351 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      ... .++++|.+|++.|+.++++.+....+|.++++.+.   .......+|.+.+++ .++..+..++..+++||+.
T Consensus       146 ~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~-~~~~~~~~~~~~~~l~~~~  220 (481)
T TIGR00879       146 ALV-PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL-QLIPAGLLFLGLFFLPESP  220 (481)
T ss_pred             hHH-HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH-HHHHHHHHHHHHhcCCCCh
Confidence            444 58999999999999999999999999999998877   443355566555555 4444455555566788863

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.28  E-value=1.9e-11  Score=123.02  Aligned_cols=156  Identities=12%  Similarity=-0.029  Sum_probs=115.3

Q ss_pred             HHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCCh
Q psy15864        255 LQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPL  333 (553)
Q Consensus       255 ~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  333 (553)
                      ....+|.+..+.+.+. +..+...+..++.+++.++.|+++||+|||++++++.++..++.+++.+....    ...+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~   93 (365)
T TIGR00900        18 TQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL----GGLNIW   93 (365)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc----CCCcHH
Confidence            3344455555545442 33466777888999999999999999999999998888777777666553210    012567


Q ss_pred             hHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHH
Q psy15864        334 VPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGT  413 (553)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  413 (553)
                      .+++.+++.+++.+....+. .+++.|++|++.|+.+.++......++.++++.+.+.+.+..+|...+++.++..++..
T Consensus        94 ~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~  172 (365)
T TIGR00900        94 QVYVLAGILAIAQAFFTPAY-QAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISA  172 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            77788888887776655444 58999999999999999999999999999999999998888887766666555444443


Q ss_pred             hh
Q psy15864        414 LY  415 (553)
Q Consensus       414 ~~  415 (553)
                      ++
T Consensus       173 ~~  174 (365)
T TIGR00900       173 LL  174 (365)
T ss_pred             HH
Confidence            33

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.28  E-value=2.6e-11  Score=122.37  Aligned_cols=172  Identities=16%  Similarity=0.067  Sum_probs=121.5

Q ss_pred             HHHHHHHhhhhhHHHHhhHHH-HHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHH
Q psy15864        241 TSLFFIGQFGGMTTLQTYAVG-IFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA  318 (553)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  318 (553)
                      .++.++..+........+.|. +.++.+.+... .+...+..++.+++.+++|+++||+|||+.++++.++.+++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~   85 (366)
T TIGR00886         6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG   85 (366)
T ss_pred             HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            333444455556667777775 55667776433 4777788899999999999999999999999999988888887776


Q ss_pred             HHHHhhcccCCC-CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh--
Q psy15864        319 VYAQFHLSYGWD-SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT--  395 (553)
Q Consensus       319 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~--  395 (553)
                      +         .. +.+.+++.+++.+++.+ .+.+. ..++++.+|++.|+.+.++...+..++..+++.+.+.+...  
T Consensus        86 ~---------~~~~~~~~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~  154 (366)
T TIGR00886        86 L---------AVQSYSVLLLLRLFIGIAGG-SFASC-MPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLI  154 (366)
T ss_pred             H---------HhhhHHHHHHHHHHHHHhch-hhHhH-HHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            6         34 56677777888777643 33333 47889999999999999998877778877777776665542  


Q ss_pred             --------ccchhhH-HHHHHHHHHHHhhheEEcccC
Q psy15864        396 --------FHLWGTL-YFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       396 --------~g~~~~~-~~~~~~~~~~~~~~~~~~pet  423 (553)
                              .+|.+.+ +..+++..+..++.+++.+++
T Consensus       155 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       155 FGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             hcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence                    2555555 333444444444444555554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.28  E-value=2.9e-11  Score=125.15  Aligned_cols=179  Identities=13%  Similarity=0.010  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHH
Q psy15864        238 AIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIV  316 (553)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  316 (553)
                      ++..++..+..+.....+....|.+.+ .+.+.. ..+...+..++.+++.++.|+++||+|||+++.++.++.+++.++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~  107 (438)
T TIGR00712        29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLL  107 (438)
T ss_pred             HHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHH
Confidence            333433344444434444555565554 466544 347777888999999999999999999999988888777777766


Q ss_pred             HHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh-h
Q psy15864        317 VAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD-T  395 (553)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~-~  395 (553)
                      +......     ..+.+.+++.+++.+++.+..+.+.. .++.|.+|++.|++++++.+....+++.+++.+.+.... .
T Consensus       108 ~~~~~~~-----~~~~~~l~~~~~l~g~~~g~~~~~~~-~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~  181 (438)
T TIGR00712       108 MGFVPWA-----TSSIAIMFVLLFLNGWFQGMGWPPCG-RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF  181 (438)
T ss_pred             Hhccccc-----cchHHHHHHHHHHHHHHhhcchHHHH-HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence            5442110     12334455666777776665554443 777899999999999999999999999998888776554 3


Q ss_pred             ccchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        396 FHLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       396 ~g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      .+|...+++.+++.++..++.++++||+
T Consensus       182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       182 NDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            5666666666776666666666677775

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.28  E-value=5e-11  Score=123.82  Aligned_cols=165  Identities=13%  Similarity=0.019  Sum_probs=114.0

Q ss_pred             HHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCC
Q psy15864        253 TTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDS  331 (553)
Q Consensus       253 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  331 (553)
                      ..+...+|.+.+. +.+.. ..+......++.+++.+++|+++||+|||++++++.++.+++.+++.+...     ...+
T Consensus        46 ~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~-----~~~~  119 (452)
T PRK11273         46 KNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW-----ATSS  119 (452)
T ss_pred             HHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc-----cccc
Confidence            3345566766655 66543 346677788999999999999999999999999988888888776665321     0224


Q ss_pred             ChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHh-HHHHhhccchhhHHHHHHHHH
Q psy15864        332 PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLY-YPMLDTFHLWGTLYFYAAISV  410 (553)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~-~~~~~~~g~~~~~~~~~~~~~  410 (553)
                      .+.+++.+++.+++.+....+.. ..+.+.+|++.|++++|+.+....+++.+++++. ..+....+|...+++.+++.+
T Consensus       120 ~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~  198 (452)
T PRK11273        120 IAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAI  198 (452)
T ss_pred             HHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45566677777777665544443 6678899999999999998888888765444443 233233466666666666666


Q ss_pred             HHHhhheEEcccCC
Q psy15864        411 VGTLYMYFVMPETE  424 (553)
Q Consensus       411 ~~~~~~~~~~pet~  424 (553)
                      +..++.++++||+.
T Consensus       199 ~~~~l~~~~~~~~~  212 (452)
T PRK11273        199 LVALFAFAMMRDTP  212 (452)
T ss_pred             HHHHHHHHHccCCH
Confidence            66666666777753

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.27  E-value=2.7e-11  Score=127.68  Aligned_cols=176  Identities=12%  Similarity=0.007  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHH
Q psy15864        237 YAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFI  315 (553)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  315 (553)
                      .+..+++..+........+....|.+.++.+.+.. ..+......++.+++.++.|+++||+|||++++++.++.+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  100 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTL  100 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            33344444444455555666677777777777643 34667778889999999999999999999999988888888887


Q ss_pred             HHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        316 VVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      ++.+         ..+.+.+++.+++.+++.+...... ..++.|.+|++.|+.+.++......++..+++.+.+.+.+.
T Consensus       101 ~~~~---------~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  170 (496)
T PRK03893        101 ACGF---------APGYWTLFIARLVIGMGMAGEYGSS-ATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV  170 (496)
T ss_pred             HHHH---------HhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7766         4466777888888888766555444 48889999999999999999999999999999999988887


Q ss_pred             ccchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        396 FHLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       396 ~g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      .+|.+.+++ +++.++..++....+||+
T Consensus       171 ~~w~~~f~~-~~~~~~~~~~~~~~~p~~  197 (496)
T PRK03893        171 WGWRALFFI-GILPIIFALWLRKNLPEA  197 (496)
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHHhCCCc
Confidence            776665554 333333333344456664

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.27  E-value=5.3e-11  Score=122.05  Aligned_cols=166  Identities=13%  Similarity=0.045  Sum_probs=122.3

Q ss_pred             HhhhhhHHHHhhHHHHHHhhCCCCCh------HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHH
Q psy15864        247 GQFGGMTTLQTYAVGIFESIHAPLDP------YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVY  320 (553)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  320 (553)
                      ....+......++|.+.++.+.+...      .+...+..++.+++.++.|+++||+|||++++++.++.+++.+++.. 
T Consensus        25 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-  103 (408)
T PRK09874         25 LTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL-  103 (408)
T ss_pred             HHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH-
Confidence            33344455566778887777765332      34455677888899999999999999999998888777777766554 


Q ss_pred             HHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchh
Q psy15864        321 AQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWG  400 (553)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~  400 (553)
                              ..+.+.+++.+++.+++.+  ..+....++.+.+|++.|+.+.++......++.++++.+.+.+.+..+|..
T Consensus       104 --------~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  173 (408)
T PRK09874        104 --------AQNIWQFLILRALLGLLGG--FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRP  173 (408)
T ss_pred             --------HhhHHHHHHHHHHHHHhhh--hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence                    4456677777777776543  233444677889999999999999999899999999999998888888777


Q ss_pred             hHHHHHHHHHHHHhhheEEcccC
Q psy15864        401 TLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      .+++.+++.++..++.++++|+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC
Confidence            77777666666666555666664

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.27  E-value=2e-11  Score=123.69  Aligned_cols=159  Identities=13%  Similarity=0.061  Sum_probs=125.8

Q ss_pred             HhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChh
Q psy15864        256 QTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLV  334 (553)
Q Consensus       256 ~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  334 (553)
                      ...+|.+.++.+.+.. ..+...+..++.+++.++.|+++||+|||+++..+.++.+++.+++..         ..+.+.
T Consensus        11 ~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~---------~~~~~~   81 (377)
T PRK11102         11 LPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL---------AQTIDQ   81 (377)
T ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH---------HccHHH
Confidence            3556667777776543 346677788999999999999999999999999988888888877765         445667


Q ss_pred             HHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHh
Q psy15864        335 PTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTL  414 (553)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  414 (553)
                      +++.+++.+++.+...... ..++.|.+|++.|++++++.+....++..++|.+.+.+.+..+|...+.+.+++.++..+
T Consensus        82 ~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVI-NALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAA  160 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence            7777888887766554444 488899999999999999999999999999999999888888877777777777766666


Q ss_pred             hheEEcccCC
Q psy15864        415 YMYFVMPETE  424 (553)
Q Consensus       415 ~~~~~~pet~  424 (553)
                      +.++++||+.
T Consensus       161 ~~~~~~~~~~  170 (377)
T PRK11102        161 LVFFFIPETL  170 (377)
T ss_pred             HHHHhCCccC
Confidence            6666777763

>KOG1330|consensus

Probab=99.26  E-value=3.5e-12  Score=124.65  Aligned_cols=179  Identities=9%  Similarity=-0.043  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHH
Q psy15864        237 YAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFI  315 (553)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  315 (553)
                      .++.+++........-+.+...++.+....+.+.+ ..+......++.++.++++|+++||+.|++++.+|..+..++.+
T Consensus        34 ~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~  113 (493)
T KOG1330|consen   34 TLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVF  113 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHH
Confidence            34455555666666677777766666666666543 34777788899999999999999999999999999999999998


Q ss_pred             HHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        316 VVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      +.++         ....|.+.+.+.+.|++-+.. .++...+++|++|...|++++++.++...+|+.++-.....+...
T Consensus       114 ~~~f---------s~~Fwq~~l~R~~vGiGeAs~-~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  114 ASGF---------SNHFWQVLLCRGFVGIGEASY-SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             HHHH---------HHHHHHHHHHHHHhccchhhh-cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence            8888         446788889999999987544 455569999999999999999999999999888877666666665


Q ss_pred             cc-chhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        396 FH-LWGTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       396 ~g-~~~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      .+ |++.+...+++.++++++.+++.+|..+
T Consensus       184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             ccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            55 5566777778888888888888887654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.25  E-value=3.4e-11  Score=125.69  Aligned_cols=180  Identities=12%  Similarity=0.012  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHH
Q psy15864        238 AIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIV  316 (553)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  316 (553)
                      +..+++.++..+..-..+....|.+.++.+.+... .+..+.+.++..++.+++|+++||+|||+++.+++++.+++.++
T Consensus        31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~  110 (467)
T PRK09556         31 YLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLG  110 (467)
T ss_pred             HHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHH
Confidence            33344444444444455556677777877776443 47777888999999999999999999999998888777777666


Q ss_pred             HHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc
Q psy15864        317 VAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF  396 (553)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~  396 (553)
                      ++.....    ...+.+.+++++++.|++.+.+.... ..++++.+|++.||.++|+......+|+++++.+...+....
T Consensus       111 ~~~~~~~----~~~~~~~l~~~r~l~G~~~~~~~~~~-~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~  185 (467)
T PRK09556        111 FGASLGS----GSVSLGLMIALWALSGFFQSTGGPCS-YSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF  185 (467)
T ss_pred             HHHHHhc----ccchHHHHHHHHHHHHHHHhccchHH-HHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence            6543211    03566778888888888776665444 588999999999999999999989999999888876665542


Q ss_pred             ---cchhhHHHHHHHHHHHHhhheEEccc
Q psy15864        397 ---HLWGTLYFYAAISVVGTLYMYFVMPE  422 (553)
Q Consensus       397 ---g~~~~~~~~~~~~~~~~~~~~~~~pe  422 (553)
                         +|...+.+.+++.++.+++.+++.++
T Consensus       186 ~~~~~~~~f~~~g~~~~~~~i~~~~~~~~  214 (467)
T PRK09556        186 FDGHVIGMFIFPSIIALIIGFIGLRYGSD  214 (467)
T ss_pred             ccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence               23344444455555555555455444

>TIGR00788 fbt folate/biopterin transporter

Probab=99.25  E-value=3.7e-11  Score=124.72  Aligned_cols=292  Identities=12%  Similarity=0.036  Sum_probs=159.9

Q ss_pred             hhhhhhhhccCcccccchhchhhhhH---HHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhccccCCceeeeec
Q psy15864        102 LVLTYVAEITQPHLRGMLSATASMTT---IFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYFIPESPHWLISQ  174 (553)
Q Consensus       102 ~~~~~i~e~~p~~~Rg~~~~~~~~~~---~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~lpEsp~~l~~~  174 (553)
                      .+-+++.|..+ +++....+....++   .+|.++++.+++.+    +||.+|++.+++.++.++..++++|++.....+
T Consensus       140 ~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~  218 (468)
T TIGR00788       140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPR  218 (468)
T ss_pred             hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            34488899988 65555444444333   36777766666554    899999999888887766667788863111000


Q ss_pred             CChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHH
Q psy15864        175 GRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTT  254 (553)
Q Consensus       175 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (553)
                      ...++. ....        ..............              ...+.. ++++.....++..++.+.........
T Consensus       219 ~~~~~~-~~~~--------~~~~~~~~~~~~~~--------------~~l~~~-l~~~~i~~~l~fifl~~~~~~~~~~~  274 (468)
T TIGR00788       219 IGTYLE-MNMA--------LLTLGVLANVKVQI--------------LGLRGA-IQLLEIAKPLIFIFLSYANLPGASGS  274 (468)
T ss_pred             ccccch-hhhh--------hhhhhHHHHHHHHH--------------HHHHHH-HhcHHHHHHHHHHHHHHhhcCCCCce
Confidence            000000 0000        00000000000000              011111 22222222222222201111111111


Q ss_pred             HHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHH-HhhcccCCCCC
Q psy15864        255 LQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYA-QFHLSYGWDSP  332 (553)
Q Consensus       255 ~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~  332 (553)
                      +.++.+   ...|++.. ......+.+++.++|..+.+++.+|++.|+++.++.++.+++.+...... .+.........
T Consensus       275 ~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~  351 (468)
T TIGR00788       275 VFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDE  351 (468)
T ss_pred             eEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCe
Confidence            111111   23455443 34666677899999999999999999999998888877777665432211 00000001223


Q ss_pred             hhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc-----ch--hhHHHH
Q psy15864        333 LVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH-----LW--GTLYFY  405 (553)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-----~~--~~~~~~  405 (553)
                      +.++....+.+++.+..+.+.. +++++.+|++.+|+..++...+.+++..+++.+.+.+.+..|     +.  +...+.
T Consensus       352 ~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i  430 (468)
T TIGR00788       352 VFVLGDSIIAEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILG  430 (468)
T ss_pred             eeeeehhHHHHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHH
Confidence            3444555666777777777774 999999999999999999999999999999988888887665     22  222333


Q ss_pred             HHHHHHHHhhheEEccc
Q psy15864        406 AAISVVGTLYMYFVMPE  422 (553)
Q Consensus       406 ~~~~~~~~~~~~~~~pe  422 (553)
                      +.++.++.+...+++|+
T Consensus       431 ~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       431 HSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            33333333344447786

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11043 putative transporter; Provisional

Probab=99.24  E-value=1.3e-10  Score=118.92  Aligned_cols=154  Identities=14%  Similarity=-0.024  Sum_probs=114.4

Q ss_pred             HhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChh
Q psy15864        256 QTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLV  334 (553)
Q Consensus       256 ~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  334 (553)
                      ....|.+.++.+.+.. ..+...+..++.+++.+++|+++||+|||+.++.+.++..++.++..+         ..+.+.
T Consensus        26 ~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---------~~~~~~   96 (401)
T PRK11043         26 LPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW---------VESAAQ   96 (401)
T ss_pred             HhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH---------hcCHHH
Confidence            3344555566666543 346677788999999999999999999999998888777777766655         456677


Q ss_pred             HHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHh
Q psy15864        335 PTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTL  414 (553)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  414 (553)
                      +++.+++.+++.+.... ....++.|.+|++.++...+.......+++.++|.+.+.+.+..+|...+.+.+++.++..+
T Consensus        97 l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~  175 (401)
T PRK11043         97 LLVLRFVQAVGVCSAAV-IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLIL  175 (401)
T ss_pred             HHHHHHHHHhhhHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            77777777776544443 33467789999998888888888888889999999999988888877777766666655555


Q ss_pred             hheEE
Q psy15864        415 YMYFV  419 (553)
Q Consensus       415 ~~~~~  419 (553)
                      +.+++
T Consensus       176 ~~~~~  180 (401)
T PRK11043        176 PTLRL  180 (401)
T ss_pred             HHHHc
Confidence            44333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.24  E-value=1.8e-10  Score=120.64  Aligned_cols=118  Identities=14%  Similarity=-0.029  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHHHHHHH----hhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHh
Q psy15864        272 PYFATLLLGVAELGGALLC----VVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTH  347 (553)
Q Consensus       272 ~~~~~~~~~i~~~~g~~~~----g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (553)
                      ..+..++..+..++..++.    +++.+|++....+.+++++++++.+++.............+.++++...++.+++..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4455556665555555555    445555555556677777777777776554322111112334556666666666654


Q ss_pred             hhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhH
Q psy15864        348 ICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYY  390 (553)
Q Consensus       348 ~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~  390 (553)
                       ...|+...++.+..|++.||.++|+......+++.+++.+..
T Consensus       398 -~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        398 -MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             -HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             444665688999999999999999877666666666665554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.24  E-value=2.3e-11  Score=122.92  Aligned_cols=160  Identities=16%  Similarity=0.039  Sum_probs=121.1

Q ss_pred             hHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      .+....+.|.+.++.+.+.. ..+...+..++..++.++.|+++||+|||+++.++.++.+++.++..+         .+
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~---------~~   89 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI---------AD   89 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH---------HH
Confidence            44556677888777777643 347777888999999999999999999999999999888888877776         44


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISV  410 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~  410 (553)
                      +.+.+++.+.+.+++.+..+... ..++.+.+| +.|+.+.++......++..+++++.+.+.+..+|.+.+.+.+++.+
T Consensus        90 ~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  167 (377)
T TIGR00890        90 SLAALYLTYGLASAGVGIAYGIA-LNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFL  167 (377)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhH-HHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            56777777877777766554443 356677776 5699999998888888888777777777777777777777777666


Q ss_pred             HHHhhheEEccc
Q psy15864        411 VGTLYMYFVMPE  422 (553)
Q Consensus       411 ~~~~~~~~~~pe  422 (553)
                      +..++.++++++
T Consensus       168 ~~~~~~~~~~~~  179 (377)
T TIGR00890       168 LVIVLGAFLIGY  179 (377)
T ss_pred             HHHHHHHHheec
Confidence            666555555543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.23  E-value=2.9e-11  Score=103.40  Aligned_cols=136  Identities=17%  Similarity=0.183  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhcccccee
Q psy15864        278 LLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWML  357 (553)
Q Consensus       278 ~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (553)
                      ...++.+++.++.|++.||+|||+.+..+..+..++.+++..         ..+.+..++..++.+++.+... +....+
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~   75 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL---------SSNITVLIIARFLQGFGAAFAL-VAGAAL   75 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH---------hccHHHHHHHHHHHHHHHHHHH-HhHHHH
Confidence            456788899999999999999999988887777777666554         3455666667777777665554 444588


Q ss_pred             eccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        358 IGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       358 ~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      +.|.+|++.|+++.++.+....++..+++.+.+.+.+..++...+.+.+++.++..++.+++.||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            899999999999999999999999999999999988877766677777777777766666666664

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.23  E-value=8.2e-11  Score=120.10  Aligned_cols=160  Identities=13%  Similarity=0.007  Sum_probs=115.6

Q ss_pred             HHHHhhHHHHH-HhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        253 TTLQTYAVGIF-ESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       253 ~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      +.+..+++.++ +..|.+.. ..+...+..++..+..+++|+++||+|||+++.++.++.+++.+++..         .+
T Consensus        27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~---------~~   97 (400)
T PRK11646         27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI---------AH   97 (400)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH---------hc
Confidence            33344444443 45565432 235555566777777899999999999999999998888888877665         45


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISV  410 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~  410 (553)
                      +.+.+++.+++.+++.+... +...+++.+.+|++.|+++.|+......++..++|.+.+.+. ..+|...+++.+++.+
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~  175 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFD-PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFV  175 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence            66677777777777664443 333478899999999999999999999999999999999888 6676666666666555


Q ss_pred             HHHhhheEEcccC
Q psy15864        411 VGTLYMYFVMPET  423 (553)
Q Consensus       411 ~~~~~~~~~~pet  423 (553)
                      +..++..+++|+.
T Consensus       176 ~~~i~~~~~~~~~  188 (400)
T PRK11646        176 LAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHhCCcc
Confidence            5544444455653

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.22  E-value=1.3e-10  Score=119.99  Aligned_cols=179  Identities=9%  Similarity=-0.074  Sum_probs=112.4

Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhhCC---CCCh-HH---HHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESIHA---PLDP-YF---ATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFI  315 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~-~~---~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  315 (553)
                      +.++........+.+..|.+.++.+.   +... ..   ......++..+|++++|+++||+|||+++.++.+++.++.+
T Consensus        29 ~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~  108 (432)
T PRK10406         29 SGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSL  108 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            34444455555666666766666532   2111 12   22334455669999999999999999999999999988888


Q ss_pred             HHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH--
Q psy15864        316 VVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML--  393 (553)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~--  393 (553)
                      +.++.+.+... .......+++++++.|++.+..+... .++++|.+|++.||.+.++.......|.++++.+...+.  
T Consensus       109 ~~~~~~~~~~~-~~~~~~~l~~~R~l~G~g~g~~~~~~-~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~  186 (432)
T PRK10406        109 VIACLPGYETI-GTWAPALLLLARLFQGLSVGGEYGTS-ATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQT  186 (432)
T ss_pred             HHhhcCCchhH-HHHHHHHHHHHHHHHHhhhhhhHhhH-HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            87762210000 00012357778889998877666544 599999999999999888776666565565554433322  


Q ss_pred             ------hhccchhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        394 ------DTFHLWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       394 ------~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                            ...+|+..|++.++ ..++.++....+||+.
T Consensus       187 ~~~~~~~~~gWr~~F~i~~~-~~ll~~~~~~~~~e~~  222 (432)
T PRK10406        187 LEDAELREWGWRIPFALGAV-LAVVALWLRRQLDETS  222 (432)
T ss_pred             CCHHHHhccchHHHHHHHHH-HHHHHHHHHhcCCCCc
Confidence                  24566555654444 3334444445677764

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.22  E-value=6.6e-11  Score=122.85  Aligned_cols=159  Identities=11%  Similarity=0.166  Sum_probs=115.9

Q ss_pred             hHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      ...+..+.+.+.+..+.+.. ..+......++..++.++.|+++||+|||++++.+.++.+++.+++++         ..
T Consensus        35 ~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~---------~~  105 (455)
T TIGR00892        35 PKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF---------SS  105 (455)
T ss_pred             hcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH---------hh
Confidence            34456677888787777643 346666666777888899999999999999999888888777776655         33


Q ss_pred             CChhHHHH-HHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHH
Q psy15864        331 SPLVPTVF-LVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAIS  409 (553)
Q Consensus       331 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~  409 (553)
                      +.+.+++. +++.+++.+....+. ..++.+.+| +.|+++.|+.+....+++.++|.+.+.+.+..+|.+.+++.+++.
T Consensus       106 ~~~~l~~~~~~l~G~~~~~~~~~~-~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~  183 (455)
T TIGR00892       106 NVIELYLTAGFITGLGLAFNFQPS-LTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLL  183 (455)
T ss_pred             hHHHHHHHHHHHHHhcchhhhhHH-HHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            44554433 355566555444333 366678886 789999999999999999999999999988888888888777766


Q ss_pred             HHHHhhheEEcc
Q psy15864        410 VVGTLYMYFVMP  421 (553)
Q Consensus       410 ~~~~~~~~~~~p  421 (553)
                      ++..++.+++.|
T Consensus       184 ~~~~v~~~~~~~  195 (455)
T TIGR00892       184 LHCCVCGALMRP  195 (455)
T ss_pred             HHHHHHHHHhCC
Confidence            655544444433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.22  E-value=1.1e-10  Score=119.96  Aligned_cols=156  Identities=10%  Similarity=-0.043  Sum_probs=108.4

Q ss_pred             HHHHhhhhhHHHHhhHHHHHHh-hCCCCCh-HHHHHHHHHHHHHHHHHHhhhhccc-CCcceeecchhHHHHHHHHHHHH
Q psy15864        244 FFIGQFGGMTTLQTYAVGIFES-IHAPLDP-YFATLLLGVAELGGALLCVVLIHYT-GKRPLALISTGGSAACFIVVAVY  320 (553)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~  320 (553)
                      ..+.....++.+..++|.++.. .|++... ......+.+...++.+++|+++||+ |||++++++.++++++.+++...
T Consensus        17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~   96 (493)
T PRK15462         17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS   96 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444566666777777654 4665433 3555666777788999999999999 99999999988888887655431


Q ss_pred             HHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccc--hhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        321 AQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNN--IRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                              .......++...+..++.+... +...++++|.+|++  .|.++.++.+...++|++++|.+.+++.+..+|
T Consensus        97 --------~~~~~~~~l~l~li~iG~G~~~-~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw  167 (493)
T PRK15462         97 --------EIHPSFLYLSLAIIVCGYGLFK-SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW  167 (493)
T ss_pred             --------hcchhHHHHHHHHHHHhccccc-ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence                    1111223333333333333332 33347889999986  799999999999999999999999999888887


Q ss_pred             hhhHHHHHHH
Q psy15864        399 WGTLYFYAAI  408 (553)
Q Consensus       399 ~~~~~~~~~~  408 (553)
                      ...|.+.++.
T Consensus       168 ~~~F~iaaig  177 (493)
T PRK15462        168 AMGFGLAAVG  177 (493)
T ss_pred             HHHHHHHHHH
Confidence            7776664443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.21  E-value=1.1e-10  Score=121.58  Aligned_cols=161  Identities=9%  Similarity=-0.100  Sum_probs=118.7

Q ss_pred             HHHHHHHhhhhhHHHHhhHHHHHHh---hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcc-cCCcceeecchhHHHHHHH
Q psy15864        241 TSLFFIGQFGGMTTLQTYAVGIFES---IHAPL-DPYFATLLLGVAELGGALLCVVLIHY-TGKRPLALISTGGSAACFI  315 (553)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~  315 (553)
                      .++..+....+++.+..++|.++..   .|.+. +..+......++..++.+++|+++|| +|||+++++++++.+++.+
T Consensus        15 l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~   94 (475)
T TIGR00924        15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHF   94 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            3334444455566666777777754   45553 33466777888999999999999999 8999999999999888887


Q ss_pred             HHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccch---hhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        316 VVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNI---RATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      ++++         ..+.+.+++.+.+.+++.+... +...+++++.+|++.   |+++.++.+...++|++++|.+.+++
T Consensus        95 ~~~~---------~~~~~~~~~~~~l~g~g~g~~~-~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l  164 (475)
T TIGR00924        95 MLAM---------SIYPDLIFYGLGTIAVGSGLFK-ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI  164 (475)
T ss_pred             HHHh---------cccHhHHHHHHHHHHhcccccc-CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH
Confidence            7765         4445556666666666554443 343478889998754   88899999999999999999999999


Q ss_pred             HhhccchhhHHHHHHHHHH
Q psy15864        393 LDTFHLWGTLYFYAAISVV  411 (553)
Q Consensus       393 ~~~~g~~~~~~~~~~~~~~  411 (553)
                      .+..+|...+.+.++..++
T Consensus       165 ~~~~g~~~~f~~~~~~~~~  183 (475)
T TIGR00924       165 AENYGYHVGFNLAAVGMVI  183 (475)
T ss_pred             HHhcChHHHHHHHHHHHHH
Confidence            8888877666665543333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.21  E-value=5.9e-11  Score=117.72  Aligned_cols=140  Identities=17%  Similarity=0.081  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccc
Q psy15864        274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLL  353 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      ...++..+..++...++.++.+|+|.|+.++++.+++++=+++.++         .++.+.+.+...+.++-......+.
T Consensus       263 ~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~---------~~~~~~i~~~klLH~~e~~l~lva~  333 (412)
T PF01306_consen  263 YLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF---------ATNPWVISLIKLLHALEFPLLLVAA  333 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-----------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh---------hcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555777888899999999999999999999999998888887         6788888888999888887776666


Q ss_pred             cceeeccccccchhhhhhhHH-HHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        354 PWMLIGEVFPNNIRATASGAS-GSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       354 ~~~~~~e~~p~~~Rg~~~~~~-~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                       +-|+++.+|++..++...+. +...+++.++.+.+.|.+.+..|....+++.+++.++..++..+.++..
T Consensus       334 -fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  334 -FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             -HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             -HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence             48999999999988888875 4667889999999999999999987788888888777777776666544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09848 glucuronide transporter; Provisional

Probab=99.21  E-value=1.4e-10  Score=120.38  Aligned_cols=110  Identities=15%  Similarity=0.042  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeec
Q psy15864        280 GVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIG  359 (553)
Q Consensus       280 ~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (553)
                      .++.+++.++.++++||+|+|+++.++.++.+++.+++.+..       ..+.+..++..++.+++.+... +..++..+
T Consensus       274 ~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~-------~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~  345 (448)
T PRK09848        274 LVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS-------VWSLPVALVALAIASIGQGVTM-TVMWALEA  345 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            466788899999999999999999988887777766555311       2234444455556666655554 34457778


Q ss_pred             cccccc-------hhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        360 EVFPNN-------IRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       360 e~~p~~-------~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      |..|.+       .+|...|+.++...++..+++.+.+.+++..|
T Consensus       346 ~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        346 DTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            887654       45888899999999999999999888776544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.20  E-value=2.2e-10  Score=110.48  Aligned_cols=252  Identities=12%  Similarity=0.081  Sum_probs=162.4

Q ss_pred             hhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----------------------chHHHHHHHHHHHHHH
Q psy15864        101 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----------------------HWRSAAILNLLFPILA  157 (553)
Q Consensus       101 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----------------------gWr~~f~i~~i~~li~  157 (553)
                      ..+-.|++...+++.-...+.+.+...++|.+++|+++..+                       .||++|.+.+...+++
T Consensus       123 taaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll  202 (422)
T COG0738         123 TAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLL  202 (422)
T ss_pred             hccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            34558999999998889999999999999999999887643                       4888888887777666


Q ss_pred             HHHhcc--ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchh
Q psy15864        158 LCALYF--IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLL  235 (553)
Q Consensus       158 ~i~~~~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (553)
                      .+....  +|+.+.-..+.                                           ..........+++.+..+
T Consensus       203 ~v~~~~~k~p~~~~~~~~~-------------------------------------------~~~~~~~~~~l~~~~~~~  239 (422)
T COG0738         203 AVLILLSKLPDLQVAAPSL-------------------------------------------GASGSAGLSSLFQNKHLR  239 (422)
T ss_pred             HHHHHhccCCcCCcccccc-------------------------------------------cccccchHHHHHhChHHH
Confidence            555444  45432100000                                           000000222333333333


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHH
Q psy15864        236 PYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAAC  313 (553)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~  313 (553)
                      ..    .+..+++...-.....|++.++.+ .|.+.+. ....+....+.++|.+++.++..|+...+.+.+..++..+.
T Consensus       240 ~g----vl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill  315 (422)
T COG0738         240 LG----VLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL  315 (422)
T ss_pred             HH----HHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            33    333444444455566677777766 5655443 46667777889999999999988998888877766555555


Q ss_pred             HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864        314 FIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML  393 (553)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~  393 (553)
                      ++...+         .++ .+.+...++.|++.+..+. ..++...+..|.+  ....|....+..+|+++.|++.|++.
T Consensus       316 ~~~~~l---------~~g-~v~~~~l~~ig~F~simfP-TIfslal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i~  382 (422)
T COG0738         316 LLAVAL---------IGG-VVALYALFLIGLFNSIMFP-TIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVIA  382 (422)
T ss_pred             HHHHHH---------hcC-hHHHHHHHHHHHHhHHHHH-HHHHHHHhccCcc--ccccceeeeeheecchHHHHHHHHHH
Confidence            555444         333 4445556677777777664 4468888888833  33444455778899999999999999


Q ss_pred             hhccchhhHHHHHHHHHHH
Q psy15864        394 DTFHLWGTLYFYAAISVVG  412 (553)
Q Consensus       394 ~~~g~~~~~~~~~~~~~~~  412 (553)
                      +..+....+.+...+|.+.
T Consensus       383 d~~g~~~~~~~~pllc~ly  401 (422)
T COG0738         383 DMFGIQLTFLIVPLLCYLY  401 (422)
T ss_pred             HhhhhHHHHHHHHHHHHHH
Confidence            9887655555344444333

>KOG2563|consensus

Probab=99.20  E-value=1.6e-10  Score=112.84  Aligned_cols=271  Identities=16%  Similarity=0.129  Sum_probs=153.3

Q ss_pred             hhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----------chHH--HHHHHHHHHHHHHHHhcc-ccCCceee
Q psy15864        105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----------HWRS--AAILNLLFPILALCALYF-IPESPHWL  171 (553)
Q Consensus       105 ~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----------gWr~--~f~i~~i~~li~~i~~~~-lpEsp~~l  171 (553)
                      -+..-|+|+++|..+..+-.++..+|.+++.++...+          .|-.  +|+..++++++.+++..+ .++.|+.-
T Consensus       163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP  242 (480)
T KOG2563|consen  163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP  242 (480)
T ss_pred             HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            4456689999999999999988888888888777665          5766  355455554444333322 33333211


Q ss_pred             eecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhh
Q psy15864        172 ISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGG  251 (553)
Q Consensus       172 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (553)
                      .+     .+....+                                +..........++..    .+++..+.+....+.
T Consensus       243 ps-----~s~~~~~--------------------------------~~~f~~si~~~~~n~----~F~il~~~ygi~~g~  281 (480)
T KOG2563|consen  243 PS-----ASQAALQ--------------------------------DASFPKSIKSCFKNR----QFIILAICYGIGLGL  281 (480)
T ss_pred             Cc-----hhHhhhh--------------------------------cCcHHHHHHHHHcCc----cHHHHHHHHhhhHHH
Confidence            00     0000000                                000011122222222    122333333333444


Q ss_pred             hHHHHhhHHHHHHhhCCC-CChHHHHHHHHHHHHHHHHHHhhhhcccCC-cceeecchhHHHHHHHHHHHHHHhhcccCC
Q psy15864        252 MTTLQTYAVGIFESIHAP-LDPYFATLLLGVAELGGALLCVVLIHYTGK-RPLALISTGGSAACFIVVAVYAQFHLSYGW  329 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~g~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  329 (553)
                      ++.+...+...+...+++ ....+...+..+++++|++++|.++||.+. |.++++......++.+.+.....     ..
T Consensus       282 F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~-----~~  356 (480)
T KOG2563|consen  282 FNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL-----FL  356 (480)
T ss_pred             HHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----cC
Confidence            444444444333334444 345577888889999999999999999875 33344444444444222221111     13


Q ss_pred             CCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc----chhhHHHH
Q psy15864        330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH----LWGTLYFY  405 (553)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g----~~~~~~~~  405 (553)
                      ...++++....++|++. .+..|+.+-+..|..-|..-++..|+.+.++++.+++..++.+...+..+    ++...+.+
T Consensus       357 ~~~viv~~t~~~~g~~~-~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~  435 (480)
T KOG2563|consen  357 GDSVIVFTTCGLLGFFG-TGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFL  435 (480)
T ss_pred             CceEehhhhHHHHHHhh-cCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHh
Confidence            34444555555555543 56667877888888766666889999999999999999998888887665    33334444


Q ss_pred             HHHHHHHHhhheEEccc
Q psy15864        406 AAISVVGTLYMYFVMPE  422 (553)
Q Consensus       406 ~~~~~~~~~~~~~~~pe  422 (553)
                      +..+.+..++..++.|.
T Consensus       436 ~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  436 TVSALLGAILVAFFRPD  452 (480)
T ss_pred             HHHHHHHHHHHhhhhhh
Confidence            44444444444444444

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.20  E-value=3.5e-10  Score=114.95  Aligned_cols=184  Identities=12%  Similarity=0.074  Sum_probs=123.2

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhhHHHHHH-hhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHH
Q psy15864        234 LLPYAIVTSLFFIGQFGGMTTLQTYAVGIFE-SIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSA  311 (553)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~  311 (553)
                      -++.+++..+.+...+...+......+.+.+ +.+++.+ ..+...+..++..++.++.|++.||+|.|+++.++.++.+
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            3445555555566666666666665565544 4666543 3466667788888888889999999999999988888887


Q ss_pred             HHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHH
Q psy15864        312 ACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYP  391 (553)
Q Consensus       312 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~  391 (553)
                      +..++..+..    ++..++.+.+++.+++.|++ +..+.+ ....++..+|++.||++.|+....+.+|..+++++.+.
T Consensus       112 i~~~~~~~a~----~~~~~s~~~lli~r~l~Gig-g~~f~~-~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        112 IPCVWLGIAV----QNPNTPFGIFIVIALLCGFA-GANFAS-SMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHH----cccCCCHHHHHHHHHHHHHH-HHhHHH-HHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            7777666521    00125677888888888886 445444 34788999999999999999977777777666655554


Q ss_pred             HH-----hhc-------------cchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        392 ML-----DTF-------------HLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       392 ~~-----~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      ++     ...             ++....+++..+.++..++.++++++.
T Consensus       186 ~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        186 VIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             HHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            33     222             233344455555556665666666654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.19  E-value=5.5e-11  Score=124.13  Aligned_cols=143  Identities=11%  Similarity=-0.060  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhcc
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRL  352 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      .+....+.++.+++.+++|+++||+|||+++.++.++.+++.++..+..       ..+.+.+++.+++.|++.+.....
T Consensus        79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~r~~~G~~~~~~~~~  151 (465)
T TIGR00894        79 GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-------GGGIALVVFCRVIQGLAQGSVSPA  151 (465)
T ss_pred             hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-------HcCchHHHHHHHHHHHhcccchhh
Confidence            3566778899999999999999999999999988887777766654321       234566777888888877666544


Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-cchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        353 LPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF-HLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       353 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      . ..+++|.+|++.|++++++......++.++++.+.+.+.+.. +|+..+.+.+++.++..++.+.+.++.
T Consensus       152 ~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       152 T-HKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             H-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            4 489999999999999999999999999999999999988874 877777777766666655555555553

>KOG0255|consensus

Probab=99.19  E-value=8.4e-11  Score=124.54  Aligned_cols=150  Identities=18%  Similarity=0.147  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhcc
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRL  352 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      .+..+++.+|.++|+++.|+++|++|||+++++++++.+++.++.++         +.+.+.+++.+++.|++.+.....
T Consensus       121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~---------a~~~~~~~~~Rfl~G~~~~~~~~~  191 (521)
T KOG0255|consen  121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF---------APNYWMFLIFRFLSGFFGSGPLTV  191 (521)
T ss_pred             HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH---------hCcHHHHHHHHHHHHhhccchhHH
Confidence            35677888999999999999999999999999999999999988887         788999999999999988766654


Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccC------CCC
Q psy15864        353 LPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPET------EGR  426 (553)
Q Consensus       353 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet------~~~  426 (553)
                      . +.+++|+++++.|+.+..+ ..+.+.++.+++.+.+++..  +|++.+++..+..++. ++.+++.||+      +++
T Consensus       192 ~-~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~-~~~~~l~~Es~rwl~~~g~  266 (521)
T KOG0255|consen  192 G-FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLF-LLLWFLPPESPRWLLSKGR  266 (521)
T ss_pred             h-HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHH-HHHHHccCcChHHHHHcCc
Confidence            4 6999999999999999999 88888899999988888877  4444444444444333 3336667787      455


Q ss_pred             ChHHHHHHHh
Q psy15864        427 TLRDIEEHFA  436 (553)
Q Consensus       427 ~~~~~~~~~~  436 (553)
                      ..++.+.+.+
T Consensus       267 ~~~a~~~l~~  276 (521)
T KOG0255|consen  267 IDEAIKILKK  276 (521)
T ss_pred             hHHHHHHHHH
Confidence            5444444433

>PTZ00207 hypothetical protein; Provisional

Probab=99.19  E-value=3.2e-10  Score=118.52  Aligned_cols=165  Identities=13%  Similarity=0.053  Sum_probs=111.5

Q ss_pred             hhhHHHHhhHHHHHHhhCCCCChH-HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccC
Q psy15864        250 GGMTTLQTYAVGIFESIHAPLDPY-FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYG  328 (553)
Q Consensus       250 ~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  328 (553)
                      +..+.+..+.+.+.+..|++.... +...+ +....++.+++|+++||+|+|++++++.++.+++.+++++....   ..
T Consensus        41 g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~---~i  116 (591)
T PTZ00207         41 SFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE---VI  116 (591)
T ss_pred             HHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc---cc
Confidence            345566778888888888764332 32222 22333455678999999999999999999999999887763210   00


Q ss_pred             CCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHH
Q psy15864        329 WDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAI  408 (553)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~  408 (553)
                      ..+.+.+++.+++.|++.+....... ..+.+.+| +.||.++|+......+|+++.+.+...+.. .++...+++.+++
T Consensus       117 ~~s~~~l~l~r~l~G~G~~~~~~~~~-~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl  193 (591)
T PTZ00207        117 EGSVVRLSVYNGLMTLGCMLFDLGAV-VTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSF  193 (591)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence            14567777778888877655544443 66788886 789999999999999999876666555543 2344556666666


Q ss_pred             HHHHHhhheEEcc
Q psy15864        409 SVVGTLYMYFVMP  421 (553)
Q Consensus       409 ~~~~~~~~~~~~p  421 (553)
                      .++++++.+++++
T Consensus       194 ~~vv~ll~~~~vr  206 (591)
T PTZ00207        194 ALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHhhee
Confidence            6666655555544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.18  E-value=1.2e-10  Score=116.31  Aligned_cols=159  Identities=16%  Similarity=-0.004  Sum_probs=121.7

Q ss_pred             HhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhc
Q psy15864        247 GQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHL  325 (553)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~  325 (553)
                      ...........+.+.+..+.+.+.. ..+......++.+++.++.|+++||+|||+.+.++.++..++.++...      
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~------   83 (352)
T cd06174          10 LSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF------   83 (352)
T ss_pred             HHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH------
Confidence            3344455556666777776665533 346677788999999999999999999999999998888888877766      


Q ss_pred             ccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHH
Q psy15864        326 SYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFY  405 (553)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~  405 (553)
                         ..+.+.+++.+++.+++.+....+. ..++.|.+|++.|+++.++......++..+++.+.+.+.+..++...+.+.
T Consensus        84 ---~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  159 (352)
T cd06174          84 ---ASSLWLLLVGRFLLGLGGGALYPAA-AALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL  159 (352)
T ss_pred             ---hccHHHHHHHHHHHHcccccccHhH-HHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence               4566777777888887766555444 488999999999999999999999999999999999988877766666555


Q ss_pred             HHHHHHHHhh
Q psy15864        406 AAISVVGTLY  415 (553)
Q Consensus       406 ~~~~~~~~~~  415 (553)
                      +++.++..++
T Consensus       160 ~~~~~~~~~~  169 (352)
T cd06174         160 AILGLLLALL  169 (352)
T ss_pred             HHHHHHHHHH
Confidence            5544444433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.18  E-value=1.6e-09  Score=109.46  Aligned_cols=163  Identities=15%  Similarity=0.076  Sum_probs=112.7

Q ss_pred             hHHHHhhHHHHHHhhC-CCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCC
Q psy15864        252 MTTLQTYAVGIFESIH-APLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGW  329 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g-~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  329 (553)
                      ......|.+.++++.| .+.+. .....+..++.++.-++.+++..|+|-+++++++++..++=+.+++..        .
T Consensus       223 ~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~--------~  294 (400)
T PF03825_consen  223 HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF--------S  294 (400)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh--------c
Confidence            3444455566666666 44332 334456667888888999999999999999999998888888887763        2


Q ss_pred             CCChhHHHHH----HHHHHHHhhhhccccceeeccccccchhhhhhhHHHHH-HHHHHHHHHHHhHHHHhhccchh----
Q psy15864        330 DSPLVPTVFL----VLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSS-SYIFAFAVNKLYYPMLDTFHLWG----  400 (553)
Q Consensus       330 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~-~~~~~~i~~~~~~~~~~~~g~~~----  400 (553)
                      ++.+..++..    .+.|..++....+.. .|+.+.+|++.|+++.++...+ ..+|+.++..+.|++.+..+...    
T Consensus       295 ~~~~~~~~~~~l~q~lhG~tf~~~~~a~~-~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~  373 (400)
T PF03825_consen  295 DPWPFIVALQLLGQLLHGLTFGLFHAASV-RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDW  373 (400)
T ss_pred             CCcHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhH
Confidence            3434333332    346777766665554 8999999999999999988776 56899999999999998866432    


Q ss_pred             --hHHHHHHHHHHHHhhheEEcccC
Q psy15864        401 --TLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       401 --~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                        .+.+.+++.++..++.+++.+|+
T Consensus       374 ~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  374 SAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCC
Confidence              23334444444445555555554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.18  E-value=2.6e-10  Score=116.21  Aligned_cols=146  Identities=14%  Similarity=-0.015  Sum_probs=117.1

Q ss_pred             hHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      ...+...+|.+.++.+.+... .+..+...++..+++++.|+++||+|||+++..+.++.+++.++.++         .+
T Consensus        25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~---------a~   95 (393)
T PRK09705         25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL---------YP   95 (393)
T ss_pred             hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH---------Cc
Confidence            355667788888888876443 57777888999999999999999999999999999999999998887         66


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-cchhhHHHHHHH
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF-HLWGTLYFYAAI  408 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-g~~~~~~~~~~~  408 (553)
                      +.+.+++.+++.|++.+...... ..++.+.+| +.|+.++++......++..+++.+.+.+.+.. +|...+.++++.
T Consensus        96 ~~~~ll~~r~l~Gig~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~  172 (393)
T PRK09705         96 QSALLLSSALLGGVGIGIIQAVM-PSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP  172 (393)
T ss_pred             chHHHHHHHHHHHhHHHHHhhhh-hHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            77888889999999887766554 477888887 77899999988888888899998888877765 554544444433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.17  E-value=2.7e-10  Score=117.77  Aligned_cols=158  Identities=10%  Similarity=0.034  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-H-HHHHH-----HHHHHHHHHHHHhhhhcccCCcceeecchhH
Q psy15864        237 YAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-Y-FATLL-----LGVAELGGALLCVVLIHYTGKRPLALISTGG  309 (553)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~~-----~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~  309 (553)
                      .....++..+..+.....+....|.+.++.+.+... . +....     ..++..+|+++.|+++||+|||++++.+.++
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~   95 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence            445555666677777788888899888887765432 2 22111     1233357889999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCh--------hHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHH
Q psy15864        310 SAACFIVVAVYAQFHLSYGWDSPL--------VPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIF  381 (553)
Q Consensus       310 ~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~  381 (553)
                      .+++.+++++         .++.+        .+++++++.|++.+..+.... .+++|.+|++.|+.++++.....+++
T Consensus        96 ~~~~~~l~~~---------~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~-~~~~e~~p~~~rg~~~~~~~~~~~~g  165 (434)
T PRK15075         96 MASGTLLIAF---------VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVS-VYLAEIATPGRKGFYTSWQSASQQVA  165 (434)
T ss_pred             HHHHHHHHHh---------CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHH-HHHHhhCCcccchHHHHHHHHHHHHH
Confidence            8888887776         33333        356778888887766655554 89999999999999999988877777


Q ss_pred             HHHHHHHhHHH--------HhhccchhhHHH
Q psy15864        382 AFAVNKLYYPM--------LDTFHLWGTLYF  404 (553)
Q Consensus       382 ~~i~~~~~~~~--------~~~~g~~~~~~~  404 (553)
                      ..+++.+.+.+        .+..+|+..+++
T Consensus       166 ~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~  196 (434)
T PRK15075        166 VVFAALLGYLLNQWLSPAQMAEWGWRIPFLI  196 (434)
T ss_pred             HHHHHHHHHHHHHhCCHHHHhccchHHHHHH
Confidence            76666655544        235666555554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.17  E-value=2.9e-10  Score=115.73  Aligned_cols=150  Identities=13%  Similarity=0.080  Sum_probs=106.8

Q ss_pred             HHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHH
Q psy15864        260 VGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVF  338 (553)
Q Consensus       260 ~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (553)
                      +.+..+.+.+.. ..+....+.++..+..+++|+++||+|||++++++.++.+++.+++.+.         .+   .++.
T Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~---------~~---~~~~   94 (393)
T PRK11195         27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG---------IH---PLLA   94 (393)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH---------HH---HHHH
Confidence            334445554432 3466777888999999999999999999999999998888777665442         11   1556


Q ss_pred             HHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheE
Q psy15864        339 LVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYF  418 (553)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  418 (553)
                      +++.|++.+... +...+++.|++|++.|+++.|+......++.+++|.+.+.+.+.. +...+.+.+++. +..++.++
T Consensus        95 r~l~G~~~a~~~-pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~-~~~~~~~~  171 (393)
T PRK11195         95 YGLVGIGAAAYS-PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIY-LLAALFNL  171 (393)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHh
Confidence            667777665444 555689999999999999999999999999999999999888753 333333333322 33334446


Q ss_pred             EcccCC
Q psy15864        419 VMPETE  424 (553)
Q Consensus       419 ~~pet~  424 (553)
                      ++||++
T Consensus       172 ~l~~~~  177 (393)
T PRK11195        172 FIPRLG  177 (393)
T ss_pred             cCCCCc
Confidence            677753

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.17  E-value=7e-10  Score=114.13  Aligned_cols=166  Identities=14%  Similarity=0.060  Sum_probs=116.2

Q ss_pred             hHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      ......+.|.+.++.+.+. +..+......++.++++++.|+++||+|||+++.++.++.+++.+++......    ...
T Consensus        33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~----~~~  108 (417)
T PRK10489         33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL----PEP  108 (417)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc----CCC
Confidence            3444555666665555432 33567777889999999999999999999999998887777766555432110    023


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISV  410 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~  410 (553)
                      +.+.+++.+++.+++.+....+. .+++.+.+|++.|+++.++......++..+++.+.+.+.+..++.+.+.+.+++.+
T Consensus       109 ~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~  187 (417)
T PRK10489        109 SLLAIYLLGLWDGFFGSLGVTAL-LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTF  187 (417)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44556666777777665554444 47888999999999999999889999999999999988887776666555444444


Q ss_pred             HHHhhheEEcccC
Q psy15864        411 VGTLYMYFVMPET  423 (553)
Q Consensus       411 ~~~~~~~~~~pet  423 (553)
                      +. ++.++.+|++
T Consensus       188 ~~-~~~~~~l~~~  199 (417)
T PRK10489        188 IT-LLPLLRLPAL  199 (417)
T ss_pred             HH-HHHHHhCCCC
Confidence            33 3334556665

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.17  E-value=3.5e-10  Score=115.58  Aligned_cols=137  Identities=7%  Similarity=-0.175  Sum_probs=108.5

Q ss_pred             hhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccC
Q psy15864        250 GGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYG  328 (553)
Q Consensus       250 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  328 (553)
                      ..........|.+.++.+.+.. ..+..+...++.++++++.|++.||+|||+++++++++++++.+++.....      
T Consensus        17 ~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~------   90 (410)
T TIGR00885        17 FANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE------   90 (410)
T ss_pred             HHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh------
Confidence            3344555667877777777643 347777888999999999999999999999999999998888877544221      


Q ss_pred             CCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864        329 WDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML  393 (553)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~  393 (553)
                      ..+.+.+++.+++.+++.+....+.. .++.++.|++.|++..++.+.+..+|..+++.+.+.+.
T Consensus        91 ~~~~~~~l~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        91 IMNYTLFLVGLFILTAGLGFLETAAN-PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             hccHHHHHHHHHHHHhhHHHHHhhhh-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677788888888777665554 78888999999999999999999999999998888775

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.16  E-value=4.8e-10  Score=114.63  Aligned_cols=163  Identities=9%  Similarity=-0.101  Sum_probs=111.8

Q ss_pred             HHhhhhhHHHHhhHHHHH-HhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHh
Q psy15864        246 IGQFGGMTTLQTYAVGIF-ESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQF  323 (553)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~  323 (553)
                      +....+......++|.++ +..+.+.. ..+...+..++.+++.++.|+++||+|||++++++.++.+++.+++.+....
T Consensus        25 ~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~  104 (399)
T PRK05122         25 FISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLL  104 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhh
Confidence            333334444555666544 45665533 3477778889999999999999999999999999888777766555432210


Q ss_pred             hcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHH
Q psy15864        324 HLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLY  403 (553)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~  403 (553)
                      . .....+.+.+++.+++.|++.+...... ..++.|.+|++.|+.+.++......++..+++.+.+.+.+..+|...++
T Consensus       105 ~-~~~~~~~~~l~~~r~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~  182 (399)
T PRK05122        105 A-AWPVLSLLLLLLGRLLLGIGESLAGTGS-ILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGL  182 (399)
T ss_pred             h-ccchhHHHHHHHHHHHHHhhHHhhcchH-HHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            0 0000123456677788887766554433 4777899999999999999888888888889998888888888665554


Q ss_pred             HHHHHHH
Q psy15864        404 FYAAISV  410 (553)
Q Consensus       404 ~~~~~~~  410 (553)
                      +.+++.+
T Consensus       183 ~~~~~~~  189 (399)
T PRK05122        183 LIMLLAL  189 (399)
T ss_pred             HHHHHHH
Confidence            4444333

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.15  E-value=2.4e-10  Score=133.00  Aligned_cols=144  Identities=11%  Similarity=-0.001  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccc
Q psy15864        274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLL  353 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      +..+++.++.+++++++|+++||+|||++++++.++.+++.++..+...      ..+.+.+++++++.|++.+... +.
T Consensus        51 ~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~~~~~-~~  123 (1146)
T PRK08633         51 IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY------LGWFWLAFAVTFLLGAQSAIYS-PA  123 (1146)
T ss_pred             HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH------HccHHHHHHHHHHHHHHHHhhc-hH
Confidence            4555677888999999999999999999998887766655555443322      3456777888888887775554 44


Q ss_pred             cceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh--------ccch-hhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        354 PWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT--------FHLW-GTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       354 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~g~~-~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      ..++++|++|++.|+.++|+......++.++++.+.+.+...        .+++ +.+.+.+++.++++++..+++|++.
T Consensus       124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (1146)
T PRK08633        124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVP  203 (1146)
T ss_pred             HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence            458999999999999999999999999999999999888765        2222 2333333333334444445567653

>PRK09952 shikimate transporter; Provisional

Probab=99.15  E-value=5e-10  Score=115.77  Aligned_cols=177  Identities=11%  Similarity=-0.041  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhHHHHHHh-h--CCCCChHHHH-----HHHHHHHHHHHHHHhhhhcccCCcceeecchh
Q psy15864        237 YAIVTSLFFIGQFGGMTTLQTYAVGIFES-I--HAPLDPYFAT-----LLLGVAELGGALLCVVLIHYTGKRPLALISTG  308 (553)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--g~~~~~~~~~-----~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~  308 (553)
                      .++..++.++..+.....+.+..+.+... .  +.+....+..     .+..++..+|+++.|+++||+|||++++++.+
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~  102 (438)
T PRK09952         23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVW  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHH
Confidence            34444444444444444455555544332 2  2332222221     12335567888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCh--------hHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHH
Q psy15864        309 GSAACFIVVAVYAQFHLSYGWDSPL--------VPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYI  380 (553)
Q Consensus       309 ~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~  380 (553)
                      +.+++.+++++         .++..        .+++++++.|++.+..+... ..+++|.+|++.|+...+.......+
T Consensus       103 ~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~-~~~~~e~~p~~~rg~~~~~~~~g~~~  172 (438)
T PRK09952        103 MMGIATALIGL---------LPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGA-ALLAVESAPKNKKAFYSSGVQVGYGV  172 (438)
T ss_pred             HHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHH-HHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            99888888777         33433        46778888898887766555 48999999999999988888777777


Q ss_pred             HHHHHHHHhHHHHh--------hccchhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        381 FAFAVNKLYYPMLD--------TFHLWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       381 ~~~i~~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      |..+++.+...+..        ..+|+..+++.++ ..+..++....+||++
T Consensus       173 G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~-~~l~~~~l~~~~~es~  223 (438)
T PRK09952        173 GLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIV-LVLIALWVRNGMEESA  223 (438)
T ss_pred             HHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHH-HHHHHHHHHHhCCCCh
Confidence            77777665554432        3565555554433 3333333334566654

>TIGR00898 2A0119 cation transport protein

Probab=99.14  E-value=1.7e-10  Score=121.86  Aligned_cols=153  Identities=16%  Similarity=0.064  Sum_probs=111.7

Q ss_pred             hHHHHHHhhCCC----CChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCCh
Q psy15864        258 YAVGIFESIHAP----LDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPL  333 (553)
Q Consensus       258 ~~~~~~~~~g~~----~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  333 (553)
                      +.+.+..+.+.+    ....+..++..++.++|+++.|+++||+|||++++++.++.+++.++.++         ..+.+
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~---------~~~~~  181 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF---------SPNYT  181 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH---------cccHH
Confidence            334444455553    23457777888999999999999999999999999988888888777766         56778


Q ss_pred             hHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHH
Q psy15864        334 VPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGT  413 (553)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  413 (553)
                      .+++++++.|++.+... +...+++.|.+|++.|+.+.++......+|.++++.+...+.+   |.+.+++.++..++..
T Consensus       182 ~~~~~r~l~G~~~~~~~-~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~  257 (505)
T TIGR00898       182 VFLVFRLLVGMGIGGIW-VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFF  257 (505)
T ss_pred             HHHHHHHHHHhhccchH-HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHH
Confidence            88888888888776554 4445899999999999999998877777777777765544333   4445555554444444


Q ss_pred             hhheEEcccCC
Q psy15864        414 LYMYFVMPETE  424 (553)
Q Consensus       414 ~~~~~~~pet~  424 (553)
                      + .++++||+.
T Consensus       258 ~-~~~~~~esp  267 (505)
T TIGR00898       258 L-LSWFVPESP  267 (505)
T ss_pred             H-HHHhcCCCh
Confidence            3 446789873

>TIGR00897 2A0118 polyol permease family

Probab=99.14  E-value=4.1e-10  Score=115.18  Aligned_cols=143  Identities=12%  Similarity=-0.021  Sum_probs=100.9

Q ss_pred             hhHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCC
Q psy15864        251 GMTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGW  329 (553)
Q Consensus       251 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  329 (553)
                      +......+.+.++++.+.+. +..+......++..++.+++|+++||+|||+++..+.++.+++.+++.....     ..
T Consensus        28 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~-----~~  102 (402)
T TIGR00897        28 GDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL-----GH  102 (402)
T ss_pred             hhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-----cC
Confidence            33334445666667777654 3457777888999999999999999999999999988888777655432110     02


Q ss_pred             CCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHH-HHHHHHhHHHHhhccch
Q psy15864        330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFA-FAVNKLYYPMLDTFHLW  399 (553)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~-~i~~~~~~~~~~~~g~~  399 (553)
                      .+.+.+++.+++.+++.+....+. ..++.+.+|++.|++++|+.+....++. .+++.+.+.+.+..++.
T Consensus       103 ~~~~~l~~~~~i~G~g~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~  172 (402)
T TIGR00897       103 ANYPLILLFYGIRGLGYPLFAYSF-LVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM  172 (402)
T ss_pred             ccHHHHHHHHHHHHcchHHHHhHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence            345555666777666554443333 3667788999999999999998888875 56777777777666643

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.13  E-value=3.9e-10  Score=120.95  Aligned_cols=151  Identities=9%  Similarity=-0.149  Sum_probs=111.9

Q ss_pred             HHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHH
Q psy15864        244 FFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQ  322 (553)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  322 (553)
                      ..+........+...++.+.++.+++.. ..++.+.+.++.+++.++.++++||+|||+.+.+++++++++.+++++...
T Consensus        41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf  120 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF  120 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence            3444444444555566666667776543 457777888999999999999999999999999999999999998876421


Q ss_pred             hhccc----------------------C--------------------CCCChhHHHHHHHHHHHHhhhhccccceeecc
Q psy15864        323 FHLSY----------------------G--------------------WDSPLVPTVFLVLAAFLTHICIRLLPWMLIGE  360 (553)
Q Consensus       323 ~~~~~----------------------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  360 (553)
                      ....+                      .                    ......+++++++.|++.+..+ ++..+|+.|
T Consensus       121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~-~~~~~~i~d  199 (633)
T TIGR00805       121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF-PLGISYIDD  199 (633)
T ss_pred             hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch-hcCchhhhc
Confidence            11000                      0                    0023445678888888765555 444599999


Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        361 VFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       361 ~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      .+|++.|+..+|+.+....+|..+++.+.+.+.+.
T Consensus       200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI  234 (633)
T ss_pred             cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            99999999999999999999999999888887643

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.13  E-value=5.9e-10  Score=116.22  Aligned_cols=152  Identities=13%  Similarity=-0.023  Sum_probs=108.9

Q ss_pred             HHHhhhhhHHHHhhHHHHHH-hhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcc-cCCcceeecchhHHHHHHHHHHHHH
Q psy15864        245 FIGQFGGMTTLQTYAVGIFE-SIHAPLDP-YFATLLLGVAELGGALLCVVLIHY-TGKRPLALISTGGSAACFIVVAVYA  321 (553)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~  321 (553)
                      .+..-.+++.+..+++.++. ..|.+... .+....+.+...+..+++|+++|| +|||++++++.++++++.+++++  
T Consensus        23 ~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~--  100 (489)
T PRK10207         23 ELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGM--  100 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHH--
Confidence            34444455555555665553 45665433 355555566666777899999999 99999999999999999888776  


Q ss_pred             HhhcccCCCC-ChhHHHHHHHHHHHHhhhhccccceeeccccccc--hhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        322 QFHLSYGWDS-PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNN--IRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       322 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                             ..+ ...+++++.+.+++.+.... ...++++|.+|++  .|+.+.++.+...++|.+++|.+.+++.+..+|
T Consensus       101 -------~~~~~~ll~~~~~l~~ig~g~~~~-~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw  172 (489)
T PRK10207        101 -------SLLKPDLIFIALGTIAVGNGLFKA-NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY  172 (489)
T ss_pred             -------hccchhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence                   222 22344566666665554443 4458899999887  457788999999999999999999999998898


Q ss_pred             hhhHHHHH
Q psy15864        399 WGTLYFYA  406 (553)
Q Consensus       399 ~~~~~~~~  406 (553)
                      ++.|++.+
T Consensus       173 ~~~F~i~~  180 (489)
T PRK10207        173 SVTYNLCG  180 (489)
T ss_pred             HHHHHHHH
Confidence            77776643

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.12  E-value=2.9e-10  Score=118.16  Aligned_cols=157  Identities=15%  Similarity=0.060  Sum_probs=115.9

Q ss_pred             HhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhH
Q psy15864        256 QTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVP  335 (553)
Q Consensus       256 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  335 (553)
                      ...++.+..+.|.+....|......++..++.++.|.++|.+|||..++++.++.+++.++.+.         +++...+
T Consensus        64 a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at---------A~~~~~~  134 (599)
T PF06609_consen   64 ASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT---------AQNMNTF  134 (599)
T ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc---------CCcHHHH
Confidence            3445667777787777778888888999999999999999999999999999999999999887         7788888


Q ss_pred             HHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhh
Q psy15864        336 TVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLY  415 (553)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  415 (553)
                      +.+..+.+++.|...  +....++|+.|.+.|+.+.++..........+++.+...+....+|+|.+++.+++..+.+++
T Consensus       135 iag~~l~GvgaG~~~--~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  135 IAGMVLYGVGAGVQE--LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HHHHHHHHHhhHHHH--HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            888888888655444  333568999999999887776655444444455555544444567777777776666655544


Q ss_pred             he-EEcccC
Q psy15864        416 MY-FVMPET  423 (553)
Q Consensus       416 ~~-~~~pet  423 (553)
                      .+ ++.|.+
T Consensus       213 ~~~fY~PP~  221 (599)
T PF06609_consen  213 IFFFYFPPP  221 (599)
T ss_pred             HHHHhCCCc
Confidence            33 334443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2615|consensus

Probab=99.12  E-value=9.6e-11  Score=111.54  Aligned_cols=140  Identities=12%  Similarity=0.096  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhcc
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRL  352 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      ....+.++++.++.+++.|.++|++|||.+++++++..++..++.+.         +.+...+++.+++.|++-+.. +.
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~---------S~~F~afv~aR~l~Gi~kgnl-~v  140 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL---------SRNFAAFVLARFLGGIFKGNL-SV  140 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhhccCch-HH
Confidence            36677788999999999999999999999999999998888777776         445544555588888766433 34


Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh---hccchhhHH---HHHHHHHHHHhhheEEcccC
Q psy15864        353 LPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD---TFHLWGTLY---FYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       353 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~---~~g~~~~~~---~~~~~~~~~~~~~~~~~pet  423 (553)
                      + -++++|+++++.|+.+++.+.....+|-+++|.+++++..   ..+.+..++   +..++.+....+..+++|||
T Consensus       141 ~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  141 I-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             H-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            4 4999999999999999999999999999999999999876   333222222   11222222234455789998

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.10  E-value=1.8e-10  Score=115.01  Aligned_cols=280  Identities=13%  Similarity=0.135  Sum_probs=153.4

Q ss_pred             cccccccccc-chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc---chHHHHHHHH---HHHHHHHHHhc
Q psy15864         90 GTFLYKMAAP-LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNL---LFPILALCALY  162 (553)
Q Consensus        90 gr~~~G~ga~-~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l---gWr~~f~i~~---i~~li~~i~~~  162 (553)
                      -|++.|++-+ ......|+..|+|+++|+++.+++.++..+|.+++++++.++   |||+.+.+..   ....+++++.+
T Consensus       121 ~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~  200 (511)
T TIGR00806       121 MEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLAL  200 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence            3677777633 226678999999999999999999999999999999887766   8998765542   22334456667


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      ++|-.++-+.-+.+.+............ .+.+........+...           ......+..-+...+..+.++...
T Consensus       201 ~LP~~~~sl~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~y~n~~vl~WS  268 (511)
T TIGR00806       201 FLKRPKRSLFFNRLEDVRGALPCELDQM-VPGPGGKLEDYLGTCR-----------DSFLVRMLSELVTIYRNPQLLLWS  268 (511)
T ss_pred             hCCCCchhhhhccccccccccccccccC-CCCCccccchhhhhhh-----------hHHHHHHHHHHHHHhcCcchhhhh
Confidence            7885444221111100000000000000 0000000000000000           000000111122233444556667


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhhCCCCChH--HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESIHAPLDPY--FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVY  320 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  320 (553)
                      +++....++++-+..|...+......+.+.+  ..-.+..+.+.+++++.|++-.++.+-..+.++.+..+-+.+++.. 
T Consensus       269 lWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m-  347 (511)
T TIGR00806       269 LWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWM-  347 (511)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhh-
Confidence            7777888888888888888876654322211  3334455666677788888865553322333332222222222211 


Q ss_pred             HHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHh
Q psy15864        321 AQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLY  389 (553)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~  389 (553)
                      ..      .++.|+.++...++...+.+...... .-++.....+.-|...|+.+++..+...+...++
T Consensus       348 ~~------t~~Iw~~Y~~yvlf~~~y~flitia~-~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV  409 (511)
T TIGR00806       348 SQ------SHDIWVLYVTYVLFRGIYQFLVPIAT-FQIASSLSKELCALVFGINTFVATALKTIITAVV  409 (511)
T ss_pred             hc------ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence            11      67888888888888887766654443 4445555555568888888887777666655433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.10  E-value=8.6e-10  Score=107.23  Aligned_cols=179  Identities=13%  Similarity=0.013  Sum_probs=134.6

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAAC  313 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~  313 (553)
                      .+.+++..+.+...++..+.+....+.+-.+.+++..+ .+...+..+.+.+..++.|++.||+|-|++..+++++.++-
T Consensus        13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP   92 (417)
T COG2223          13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP   92 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH
Confidence            44455555556666666666666666666667776543 47777888888999999999999999999999999888888


Q ss_pred             HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864        314 FIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML  393 (553)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~  393 (553)
                      ++.+++...      ..+.+.++++.++.|++.+ .+ .+...+++..||++.+|++.|+.. .+++|..+...+.+.+.
T Consensus        93 ~~~~~~a~~------~~~~~~ll~~gll~G~~Ga-sF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~  163 (417)
T COG2223          93 CLGLAFAVT------YPSTWQLLVIGLLLGLAGA-SF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA  163 (417)
T ss_pred             HHHHHHHcc------CCchHHHHHHHHHHhcccc-ee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence            888777432      2233577777777777543 33 344588999999999999999988 99999999999999888


Q ss_pred             hhcc---chhhHHHHHHHHHHHHhhheEEccc
Q psy15864        394 DTFH---LWGTLYFYAAISVVGTLYMYFVMPE  422 (553)
Q Consensus       394 ~~~g---~~~~~~~~~~~~~~~~~~~~~~~pe  422 (553)
                      ...+   |.....++....++..++.++++.+
T Consensus       164 ~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         164 VAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8888   6666777777777767777666544

>PRK12382 putative transporter; Provisional

Probab=99.09  E-value=8.7e-10  Score=112.43  Aligned_cols=152  Identities=9%  Similarity=-0.154  Sum_probs=104.7

Q ss_pred             hhhhHHHHhhHHHHH-HhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcc
Q psy15864        249 FGGMTTLQTYAVGIF-ESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLS  326 (553)
Q Consensus       249 ~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~  326 (553)
                      +.+.......+|.++ ++.|.+.. ..+..+...++.++++++.|+++||+|||++++++.+...++.+........ ..
T Consensus        28 ~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~  106 (392)
T PRK12382         28 YMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAIL-PV  106 (392)
T ss_pred             HHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhcc-cc
Confidence            333444444555543 45676543 3477778889999999999999999999999888877666554433221100 00


Q ss_pred             cCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhH
Q psy15864        327 YGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTL  402 (553)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~  402 (553)
                      ....+.+.+++.+++.|.+.+...... .+++.+.+|++.|++++++......++..++|.+.+.+.+..+|...+
T Consensus       107 ~~~~~~~~l~~~r~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~  181 (392)
T PRK12382        107 SAPFKFALLVVGRLILGFGESQLLTGA-LTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALA  181 (392)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence            001244567778888888776554333 477789999999999999988888888889998888887777754433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.09  E-value=8e-10  Score=112.21  Aligned_cols=146  Identities=12%  Similarity=-0.088  Sum_probs=112.6

Q ss_pred             HHHHHHHHhhhhhHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHH
Q psy15864        240 VTSLFFIGQFGGMTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA  318 (553)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  318 (553)
                      ..++..+...........++|.+.++.+.+. +..+......++.+++.++.|+++||+|||+.+.++.++.+++.++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~   89 (381)
T PRK03633         10 LLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG   89 (381)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455556667778888888877754 345777788899999999999999999999999998888888777766


Q ss_pred             HHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        319 VYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      +         .++.+.+++.+++.|++.+...... ...+.+..+++.|+.++++......++..+++.+.+.+...
T Consensus        90 ~---------~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         90 L---------MVGFWSWLAWRFVAGIGCAMIWVVV-ESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             H---------hccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            5         4567777888888888765554333 25556788889999999999999999999999888877654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.09  E-value=8.5e-10  Score=110.29  Aligned_cols=158  Identities=10%  Similarity=0.041  Sum_probs=125.9

Q ss_pred             hHHHHhhHHHHHHhhCCCCCh--HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLDP--YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGW  329 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  329 (553)
                      -...++..|.+.+..|++...  ..+...+..+.+++.+++|+++||+|-|+++.++++...+..++.++         .
T Consensus        42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f---------a  112 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL---------G  112 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH---------H
Confidence            445566677777788887654  47777888999999999999999999999999999888888888877         4


Q ss_pred             CCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhH--HHHHH
Q psy15864        330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTL--YFYAA  407 (553)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~--~~~~~  407 (553)
                      .+...+.+.+++.|++-+..+ +. +.|+...+|++.|++++|+......+|.++++++.+. +..++|....  ..+..
T Consensus       113 ~Sl~~L~i~R~llGvaEA~~~-A~-~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl  189 (511)
T TIGR00806       113 TSVWHMQLMEVFYSVTMAARI-AY-SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISL  189 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHH
Confidence            567888999999999988887 54 5899999999999999999999999999999999988 5556654432  23344


Q ss_pred             HHHHHHhhheEEcc
Q psy15864        408 ISVVGTLYMYFVMP  421 (553)
Q Consensus       408 ~~~~~~~~~~~~~p  421 (553)
                      ...++++++.+++|
T Consensus       190 ~s~~~a~~~a~~LP  203 (511)
T TIGR00806       190 VFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHHHHhCC
Confidence            44444455556677

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.08  E-value=6.2e-09  Score=107.16  Aligned_cols=125  Identities=13%  Similarity=0.087  Sum_probs=77.9

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHhhhhcccCC--cc-----eeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHH
Q psy15864        267 HAPLDPYFATLLLGVAELGGALLCVVLIHYTGK--RP-----LALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFL  339 (553)
Q Consensus       267 g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Gr--r~-----~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (553)
                      |+.....+..++..+..++.+++.+++=.|..|  |.     -+.+++++++++.+++.+...........+.+++++..
T Consensus       305 g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~  384 (493)
T PRK15462        305 GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGL  384 (493)
T ss_pred             ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHH
Confidence            444456677788777777777776666555532  21     14456666677766665433222211123445555555


Q ss_pred             HHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHH-HHHHHHHHHHhHHH
Q psy15864        340 VLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSS-YIFAFAVNKLYYPM  392 (553)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~-~~~~~i~~~~~~~~  392 (553)
                      ++..++ -.+..|+..+.++++.|++.||..+|+..... .++..+++.+....
T Consensus       385 ~~~t~g-El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        385 AVMGFA-ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHH-HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555554 46777888899999999999999999886533 56666665555443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.07  E-value=1.1e-09  Score=127.01  Aligned_cols=142  Identities=11%  Similarity=-0.048  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccc
Q psy15864        274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLL  353 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      +...+..+..++.++++|+++||+|||+++.....+.++..++..+...      ..+.+.+++++++.+++.++. .+.
T Consensus        56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~------~~s~~~l~~~~~l~gi~~a~~-~p~  128 (1140)
T PRK06814         56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH------LNSVPLLFAALFLMGIHSALF-GPI  128 (1140)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHhh-chH
Confidence            4445566788899999999999999998754322222222111111111      346778888888888876555 455


Q ss_pred             cceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        354 PWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       354 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      ..+++.+++|++.|+.++|+.+....++.+++|.+.+.+....+|...+ +.+++..++++++++++|++
T Consensus       129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCC
Confidence            5699999999999999999999999999999999999998887765555 44445445555555666665

>PRK10133 L-fucose transporter; Provisional

Probab=99.06  E-value=2.2e-09  Score=110.72  Aligned_cols=142  Identities=6%  Similarity=-0.202  Sum_probs=108.8

Q ss_pred             HHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHh
Q psy15864        245 FIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQF  323 (553)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~  323 (553)
                      ++...........+.|.+.+..+.+... .+..+.+.++.+++.++.|+++||+|||+++.++.++.+++.+++..... 
T Consensus        35 ~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-  113 (438)
T PRK10133         35 FFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-  113 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            3444444566667788887777776433 46677888999999999999999999999999999999988877532111 


Q ss_pred             hcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864        324 HLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML  393 (553)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~  393 (553)
                           +++.+.+++.+++.|++.+...... ..++.++.|.+.|+..+++.+.+..+|..+++.+.+.+.
T Consensus       114 -----a~~~~~ll~~r~l~G~g~g~~~~~~-~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        114 -----IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             -----cCCHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 5567778888999998887776555 477788877777766788888888899999888776543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.04  E-value=1.6e-09  Score=109.65  Aligned_cols=162  Identities=12%  Similarity=0.003  Sum_probs=106.8

Q ss_pred             HHHHhhHHHHH-HhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeec-chhHHHHHHHHHHHHHHhhcccCC
Q psy15864        253 TTLQTYAVGIF-ESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALI-STGGSAACFIVVAVYAQFHLSYGW  329 (553)
Q Consensus       253 ~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~  329 (553)
                      .....++|.++ ++.+.+.. ..+......+..++..++.|+++||+|||+.+++ +.++.+++.++...         .
T Consensus        14 ~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~---------~   84 (375)
T TIGR00899        14 ALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW---------N   84 (375)
T ss_pred             HHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh---------c
Confidence            33344455444 44565433 3455666677888888999999999999887654 44444444444444         4


Q ss_pred             CCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhh--hhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHH
Q psy15864        330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATA--SGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAA  407 (553)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~--~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~  407 (553)
                      ++.+.+++.+++.+.+.+. ..+....+..|..|++.|+.+  .+.......++..+++.+.+.+.+..+|+..+++.++
T Consensus        85 ~~~~~l~~~~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~  163 (375)
T TIGR00899        85 RNYFLLLVLGVLLSSFAST-ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAAL  163 (375)
T ss_pred             chHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHH
Confidence            4556666666665554433 334444667788777766644  4666667788899999999988888887777777777


Q ss_pred             HHHHHHhhheEEcccCC
Q psy15864        408 ISVVGTLYMYFVMPETE  424 (553)
Q Consensus       408 ~~~~~~~~~~~~~pet~  424 (553)
                      +.++..++.++++||.+
T Consensus       164 ~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       164 AFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             HHHHHHHHHHHhCCCcc
Confidence            66666666666678753

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.03  E-value=2.7e-09  Score=111.85  Aligned_cols=156  Identities=10%  Similarity=-0.097  Sum_probs=105.2

Q ss_pred             HHHHHhhhhhHHHHhhHHHHH-HhhCCCCChH-HHHHHHHHHHHHHHHHHhhhhcc-cCCcceeecchhHHHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIF-ESIHAPLDPY-FATLLLGVAELGGALLCVVLIHY-TGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                      +..++...+++.+..+++.++ +..|.+.... +......+......+++|+++|| +|||++++++.++.+++.+++.+
T Consensus        28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~  107 (500)
T PRK09584         28 SIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW  107 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            333444445556666777776 4566654433 33334344444445789999999 59999999999888888776665


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccch--hhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNI--RATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      .        ....+.+++.+.+.+++.+... +...+++++.+|++.  |+.+.++.+...++|++++|.+.+++.+..+
T Consensus       108 ~--------~~~~~~l~~~~~l~gig~g~~~-~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g  178 (500)
T PRK09584        108 S--------GHDAGIVYMGMATIAVGNGLFK-ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG  178 (500)
T ss_pred             h--------cccHHHHHHHHHHHHHhhhccc-CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            1        1223344455566666555444 344478899998643  4457788888999999999999999998888


Q ss_pred             chhhHHHHHH
Q psy15864        398 LWGTLYFYAA  407 (553)
Q Consensus       398 ~~~~~~~~~~  407 (553)
                      |+..|.+.++
T Consensus       179 ~~~~F~i~~i  188 (500)
T PRK09584        179 WSVAFALSVV  188 (500)
T ss_pred             HHHHHHHHHH
Confidence            7777766554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.02  E-value=2e-08  Score=98.14  Aligned_cols=245  Identities=16%  Similarity=0.080  Sum_probs=149.2

Q ss_pred             hhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----chHHHHHH--HHHHHHHHHHHhccccCCceeeeec
Q psy15864        102 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAIL--NLLFPILALCALYFIPESPHWLISQ  174 (553)
Q Consensus       102 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----gWr~~f~i--~~i~~li~~i~~~~lpEsp~~l~~~  174 (553)
                      ...++++|..|+++|+++.++..++..+|.+++.++.+.+     .=|..-.+  .+++.+++.++..+=.|...-....
T Consensus       109 ~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~  188 (403)
T PF03209_consen  109 SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAA  188 (403)
T ss_pred             HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Confidence            3448899999999999999999999999999998877654     22222222  2222333322333322321100000


Q ss_pred             CChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHH
Q psy15864        175 GRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTT  254 (553)
Q Consensus       175 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (553)
                      ..                 +                     .........+..+...+..+++++..++..+..+.--..
T Consensus       189 ~~-----------------~---------------------~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~i  230 (403)
T PF03209_consen  189 AA-----------------E---------------------RPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVI  230 (403)
T ss_pred             CC-----------------C---------------------CCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHH
Confidence            00                 0                     000011122333444444555554444433333221122


Q ss_pred             HHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhc-ccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCC
Q psy15864        255 LQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIH-YTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSP  332 (553)
Q Consensus       255 ~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  332 (553)
                      +-.|.-   +..|++. ++.......+.+.++|..+.|++.. +.+.+++..+++.+.+++..++.+...      ..+.
T Consensus       231 LEPygg---~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~------~~~~  301 (403)
T PF03209_consen  231 LEPYGG---EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP------LGSP  301 (403)
T ss_pred             cCCchh---HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh------cccc
Confidence            222222   2235543 3345666778888999988888766 677777777777777777766555432      4567


Q ss_pred             hhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q psy15864        333 LVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD  394 (553)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~  394 (553)
                      +.+....+++|++.|....... +.+.++..++..|+.+|.......+...++..+.+.+.|
T Consensus       302 ~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  302 WLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899988877765554 677888888888999999888888888888877777664

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3764|consensus

Probab=99.01  E-value=4.3e-10  Score=107.81  Aligned_cols=146  Identities=12%  Similarity=-0.029  Sum_probs=127.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhh
Q psy15864        271 DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICI  350 (553)
Q Consensus       271 ~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (553)
                      +..+......+..++.+++.|.+.||+|+|..+++|+.++..+.+++++         ..+.++++++|.+-|++.+...
T Consensus       107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf---------g~sy~~l~vAR~LQgvgsA~~~  177 (464)
T KOG3764|consen  107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF---------GNSYPMLFVARSLQGVGSAFAD  177 (464)
T ss_pred             chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH---------cchhHHHHHHHHHhhhhHHHHH
Confidence            3456777788999999999999999999999999999999999999998         6778899999999999887666


Q ss_pred             ccccceeeccccccch-hhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccCCCC
Q psy15864        351 RLLPWMLIGEVFPNNI-RATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGR  426 (553)
Q Consensus       351 ~~~~~~~~~e~~p~~~-Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~  426 (553)
                      .+- .+++++.+|.+. ||.++|+...+..+|-.++|.++|.+++..|...+|+++++++++-.++.++.++.++..
T Consensus       178 tsg-lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  178 TSG-LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             hhh-HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence            554 488999999865 799999999999999999999999999999999999999999998888887777665443

>KOG2532|consensus

Probab=98.99  E-value=3.1e-09  Score=108.82  Aligned_cols=158  Identities=11%  Similarity=0.041  Sum_probs=130.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhh
Q psy15864        271 DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICI  350 (553)
Q Consensus       271 ~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (553)
                      +..++.+....|.+++.+.+|+++||+|-|+++.++.++.+++.++..+..       ..+.+.+++.+++.|++.+..+
T Consensus        74 ~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa-------~~~~~~~~~~R~lqGl~~g~~~  146 (466)
T KOG2532|consen   74 EKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAA-------SIGFYLLLVLRFLQGLGQGVLF  146 (466)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-------HhcchhhHHHHHHhHHHHhHHH
Confidence            345778888999999999999999999999999999999888888877654       3344577899999999998887


Q ss_pred             ccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh-ccchhhHHHHHHHHHHHHhhheEEcccC----CC
Q psy15864        351 RLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT-FHLWGTLYFYAAISVVGTLYMYFVMPET----EG  425 (553)
Q Consensus       351 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~pet----~~  425 (553)
                      ..+. .+.+..+|+..|++..++.....++|.+++-++.|.+.+. .||...+.+.+++.++..++.+++..++    +.
T Consensus       147 pa~~-~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  147 PAIG-SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             hhhh-ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            6664 8899999999999999999999999999999999999988 8999999999999888888776666544    22


Q ss_pred             CChHHHHHHHh
Q psy15864        426 RTLRDIEEHFA  436 (553)
Q Consensus       426 ~~~~~~~~~~~  436 (553)
                      .+.+|.+...+
T Consensus       226 is~~El~~I~~  236 (466)
T KOG2532|consen  226 ISEKELKYIEK  236 (466)
T ss_pred             CCHHHHHHHHh
Confidence            33445444433

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.95  E-value=7.6e-09  Score=108.35  Aligned_cols=172  Identities=13%  Similarity=0.021  Sum_probs=113.3

Q ss_pred             HHHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhccc-----CCcce-eecchhHHHHHHHHH
Q psy15864        244 FFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYT-----GKRPL-ALISTGGSAACFIVV  317 (553)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~  317 (553)
                      ..+.+..........+|.++...|.+..........+.. .++.++.|+++||+     |||+. ++++.++.+++.+.+
T Consensus        20 l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~   98 (491)
T PRK11010         20 LGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAM   98 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHH
Confidence            334444455566667778877777654333222222222 26889999999999     99886 545555555555555


Q ss_pred             HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh-hc
Q psy15864        318 AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD-TF  396 (553)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~-~~  396 (553)
                      ++..      +..+.+.+.+.+++.+++.+... +...+++.|.+|++.|+.+.++......++..+++.+.+.+.+ ..
T Consensus        99 a~~~------~~~~l~~l~~~~~l~~~~~a~~~-i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~  171 (491)
T PRK11010         99 GFLE------PGTQLRWLAALAVVIAFCSASQD-IVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL  171 (491)
T ss_pred             HHcC------CcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4421      12344555556666666654433 3445899999999999999999999999999999988888887 45


Q ss_pred             cchhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        397 HLWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       397 g~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      +|...+++.+++.++..+.. +++||+.
T Consensus       172 GWr~~f~i~a~l~ll~~l~~-~~~~e~~  198 (491)
T PRK11010        172 GWQGMYWLMAALLIPCIIAT-LLAPEPT  198 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence            77777777666655554443 3467763

>KOG0253|consensus

Probab=98.94  E-value=6.8e-09  Score=98.51  Aligned_cols=166  Identities=14%  Similarity=0.021  Sum_probs=120.0

Q ss_pred             hhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhH
Q psy15864        257 TYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVP  335 (553)
Q Consensus       257 ~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  335 (553)
                      ...|..-...+.+. +..+......++.++|+...|.++|++|||+...+.++..++...+-+.         +.+...+
T Consensus        99 ~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~---------spnf~~L  169 (528)
T KOG0253|consen   99 LILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA---------SPNFASL  169 (528)
T ss_pred             HHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC---------CCCeehh
Confidence            33444333344332 3446677788999999999999999999999998888777777666665         6777888


Q ss_pred             HHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhh
Q psy15864        336 TVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLY  415 (553)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  415 (553)
                      ++++.+.+++.|.  .|...++-.|..|...|+..+-+. +...+|.+....+.-..+...||. .++.+..+++..+..
T Consensus       170 ~~f~~l~~~g~gg--~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr-~~l~~~~~pl~~~a~  245 (528)
T KOG0253|consen  170 CVFRALWGFGVGG--LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR-YLLFTSSTPLMFAAR  245 (528)
T ss_pred             hHHHHHHhccCCC--ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHhHHHHHHH
Confidence            8888888887765  344446668999999999877666 667777777777666677777754 455555577777777


Q ss_pred             heEEcccC------CCCChHHHHHHH
Q psy15864        416 MYFVMPET------EGRTLRDIEEHF  435 (553)
Q Consensus       416 ~~~~~pet------~~~~~~~~~~~~  435 (553)
                      .++++||+      +|++.++++.+.
T Consensus       246 f~~w~~ESpRf~~~~G~~~kAletL~  271 (528)
T KOG0253|consen  246 FLVWVYESPRFYLAKGDDYKALETLH  271 (528)
T ss_pred             HHhhcccCcchhhhcCChHHHHHHHH
Confidence            78899998      555656555443

>TIGR00896 CynX cyanate transporter

Probab=98.93  E-value=6.5e-09  Score=104.46  Aligned_cols=134  Identities=16%  Similarity=-0.005  Sum_probs=102.1

Q ss_pred             hHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      +......+|.+.++.+.+.. ..+...+..++..++.++.|+++||+|||+++.++.++.+++.++. .         ..
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~---------~~   85 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S---------AP   85 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H---------hc
Confidence            34445677888888887644 3477778889999999999999999999999888877766665544 2         44


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH  397 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g  397 (553)
                      +.+.+++.+++.+++.+......+ .++.+.+| +.|+.+.++.+....++..+++.+.+.+.+..+
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~  150 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLP-SLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG  150 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccch-HHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            566777778888887766554443 67778776 578999999999888999999988888776543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.91  E-value=3.3e-08  Score=101.43  Aligned_cols=188  Identities=13%  Similarity=-0.021  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhc----ccCCcceeecc-hhH
Q psy15864        236 PYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIH----YTGKRPLALIS-TGG  309 (553)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~d----r~Grr~~l~~~-~~~  309 (553)
                      +++.++.+....+++ +.....+++.+++..|.+... .+..++..+..++..++.|+++|    |+|||+.++++ .+.
T Consensus         5 ~li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~   83 (477)
T TIGR01301         5 KLLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence            334444444444443 455556666677777775432 35566677888999999999999    59999988765 444


Q ss_pred             HHHHHHHHHHHHHhhcc---c--CCCCC---hhHHHHHHHHHHHHhhhhccccceeeccccccchh--hhhhhHHHHHHH
Q psy15864        310 SAACFIVVAVYAQFHLS---Y--GWDSP---LVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIR--ATASGASGSSSY  379 (553)
Q Consensus       310 ~~i~~~~~~~~~~~~~~---~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R--g~~~~~~~~~~~  379 (553)
                      .+++.+++.+.......   .  .....   +..+++..+..++......+.. ++++|++|++.|  +.+.++...+..
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~r-ALiaDl~p~~~~~~~~a~~~~~~~~~  162 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCR-AFLADLTGGDARRTRIANAYFSFFMA  162 (477)
T ss_pred             HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHHH
Confidence            44444444332110000   0  00001   2223333344445555555554 899999998866  568888888888


Q ss_pred             HHHHHHHHHhHHH--Hhhc-------------cchhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        380 IFAFAVNKLYYPM--LDTF-------------HLWGTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       380 ~~~~i~~~~~~~~--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      +|+++++.+.++.  ....             +....|.+.+++.++..++.+++.+|..-
T Consensus       163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence            8888888777653  1111             23445666667777777888888999653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.89  E-value=8.4e-09  Score=103.67  Aligned_cols=162  Identities=12%  Similarity=0.015  Sum_probs=102.1

Q ss_pred             HHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhccc-----CCccee-ecchhHHHHHHHHHHHHHHhhccc
Q psy15864        254 TLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYT-----GKRPLA-LISTGGSAACFIVVAVYAQFHLSY  327 (553)
Q Consensus       254 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-----Grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~  327 (553)
                      .+....|.+.++.|.+.+.........+...+ .++.|+++||+     |||+.+ +.+.++.+++.+++++..      
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~------   78 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV------   78 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC------
Confidence            34455677777777765443222222333343 88999999998     888874 455555555544444311      


Q ss_pred             CCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc--------ch
Q psy15864        328 GWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH--------LW  399 (553)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g--------~~  399 (553)
                      +..+.+.+....++.+++.+.. .+...+++.|.+|++.|+.+.++......+|.++++.+.+.+....+        |.
T Consensus        79 ~~~~l~~l~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr  157 (356)
T TIGR00901        79 PSTDLPLLAGLAFLIAFFSATQ-DIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG  157 (356)
T ss_pred             cchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence            0123333444444444443333 34445788999999999999999999999999999999888877776        66


Q ss_pred             hhHHHHHHHHHHHHhhheEEcccC
Q psy15864        400 GTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      ..+++.+++.++..++.++..||+
T Consensus       158 ~~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       158 YIFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCC
Confidence            666666655555444444456765

>KOG3626|consensus

Probab=98.88  E-value=4.5e-08  Score=102.75  Aligned_cols=205  Identities=16%  Similarity=0.200  Sum_probs=123.8

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----------------------chH
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----------------------HWR  144 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----------------------gWr  144 (553)
                      +.++.|+|+.  .++..+|+-|....++-..++|++.....+|+++|.++++++                       -|.
T Consensus       243 ~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWW  322 (735)
T KOG3626|consen  243 GQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWW  322 (735)
T ss_pred             HHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHH
Confidence            5678899985  568889999999999999999999999999999999888754                       377


Q ss_pred             HHHHHHHHHHHHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChh
Q psy15864        145 SAAILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPN  224 (553)
Q Consensus       145 ~~f~i~~i~~li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (553)
                      .-|++.+.+.++..+.++++|....-   ..+..++++ .................                  ......
T Consensus       323 lGFLi~g~~~~~~a~p~f~fPk~lp~---~~~~~~~~~-~~~~k~~~~~~~~~~~~------------------~~~ikd  380 (735)
T KOG3626|consen  323 LGFLICGALLLFSAVPLFFFPKELPK---SQKRKRARD-LHVLKTESGGAKSDKTF------------------GKKIKD  380 (735)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccCcc---ccccchhhh-hcccccccccccCCcch------------------hhhHHH
Confidence            77778888887777777777654321   000000000 00000000000000000                  000012


Q ss_pred             hhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCChH--HHHHHHHHHHHHHHHHHhhhhcccC--C
Q psy15864        225 YRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLDPY--FATLLLGVAELGGALLCVVLIHYTG--K  299 (553)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--~~~~~~~i~~~~g~~~~g~l~dr~G--r  299 (553)
                      +....++....++++...+........+..+..|+|-+++. ++.+....  +...+...+..+|.+++|++..|+.  -
T Consensus       381 fp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~  460 (735)
T KOG3626|consen  381 FPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSA  460 (735)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccH
Confidence            22233444455566677777777778888889999999864 56543322  2233444556788899999999874  3


Q ss_pred             cceeecchhHHHHHHHH
Q psy15864        300 RPLALISTGGSAACFIV  316 (553)
Q Consensus       300 r~~l~~~~~~~~i~~~~  316 (553)
                      |.+..+.++...++.+.
T Consensus       461 r~~a~~~~~~~~l~l~~  477 (735)
T KOG3626|consen  461 RGAAKFVIVCSVLSLLF  477 (735)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444333333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.87  E-value=2e-08  Score=102.73  Aligned_cols=174  Identities=17%  Similarity=0.092  Sum_probs=114.5

Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhccc-----CCcc-eeecchhHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYT-----GKRP-LALISTGGSAACFI  315 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-----Grr~-~l~~~~~~~~i~~~  315 (553)
                      +..++.+.........-+|.++++.|++.+..-........ .+..++.|+++||+     |||+ .++++.++.+++..
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~   83 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA   83 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence            33455566667777788899998888875544222222222 57789999999999     8876 56666666666666


Q ss_pred             HHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        316 VVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      ++++...      ..+.+.+++..++.+++.+ ...+...+++.|.+|++.|+.+.++......++..+++.+.+.+.+.
T Consensus        84 ~l~~~~~------~~~~~~l~~~~~~~~~~~~-~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~  156 (402)
T PRK11902         84 AMAFCPP------HAALWPLAGLAVLVAFLSA-SQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR  156 (402)
T ss_pred             HHHhcCc------cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            5554210      1233444444445444433 33344458899999999999999999888888999988888887775


Q ss_pred             -ccchhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        396 -FHLWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       396 -~g~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                       .+|...+++.+++.++..+ ..+++||+.
T Consensus       157 ~~gw~~~f~i~a~~~l~~~l-~~~~~~e~~  185 (402)
T PRK11902        157 VLGWGNTYLLMAGLMLAGAL-TTLWAPEPE  185 (402)
T ss_pred             ccCHHHHHHHHHHHHHHHHH-HHHhcCCCc
Confidence             3666666666665554443 335567653

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.85  E-value=2e-08  Score=102.11  Aligned_cols=132  Identities=11%  Similarity=-0.003  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCCh--------hHHHHHHHHHHHHhhhhcc
Q psy15864        281 VAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPL--------VPTVFLVLAAFLTHICIRL  352 (553)
Q Consensus       281 i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  352 (553)
                      ++.++++++.|+++||+|||++++++.++..++.+++.+         ..+..        .+++.+++.|++.+.....
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  116 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL---------LPSYATIGIWAPILLLLARLIQGFSLGGEWGG  116 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh---------CCChhhhHHHHHHHHHHHHHHHHhhccccccc
Confidence            344578899999999999999999999888888877766         32322        3566677777766555544


Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH--------hhccchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        353 LPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML--------DTFHLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       353 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      . .++++|.+|++.|+...++......+|..+++.+...+.        +..+|...+.+.+++. +..++....+||+
T Consensus       117 ~-~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~  193 (394)
T TIGR00883       117 A-ALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLV-LIGLYLRRNLEET  193 (394)
T ss_pred             c-HHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHH-HHHHHHHHhcCCC
Confidence            4 488999999999999999988888888888887665543        2345444444433333 3333333445554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.85  E-value=2.8e-08  Score=103.68  Aligned_cols=174  Identities=16%  Similarity=0.076  Sum_probs=116.8

Q ss_pred             cchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHH
Q psy15864        232 TFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSA  311 (553)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~  311 (553)
                      +.++.+++...+..++.......+..++.   +..+.+....+......+..++.++++|.++||+.||++++.+-++.+
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~---~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~   86 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT---QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRA   86 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence            33444444444444444433333333222   222222223355555667778889999999999999999999888777


Q ss_pred             HHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHH
Q psy15864        312 ACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYP  391 (553)
Q Consensus       312 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~  391 (553)
                      +..++++++...    +..+.+.+++..++.+++.++. .|...+++.|++|.+....+.++.....++..+++|.+.|.
T Consensus        87 ~~~~~L~~l~~~----~~~~~~~Ll~~~fl~g~~~a~~-~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~  161 (524)
T PF05977_consen   87 LVALLLAVLAFF----GLLSPWLLLILTFLLGIGSAFF-NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI  161 (524)
T ss_pred             HHHHHHHHHHHh----CcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence            666665554331    1345666777777777766444 45556899999999999999999999999999999999999


Q ss_pred             HHhhccchhhHHHHHHHHHHHH
Q psy15864        392 MLDTFHLWGTLYFYAAISVVGT  413 (553)
Q Consensus       392 ~~~~~g~~~~~~~~~~~~~~~~  413 (553)
                      ++...|....+.+-++..++..
T Consensus       162 Lva~~G~~~~f~inalsfl~~i  183 (524)
T PF05977_consen  162 LVAFFGAAAAFLINALSFLISI  183 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9888876666665554444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.84  E-value=4e-08  Score=100.14  Aligned_cols=161  Identities=12%  Similarity=-0.013  Sum_probs=95.8

Q ss_pred             HHHHhhHHHHH-HhhCCCCCh-HHHHHHH-HHHHHHHHHHHhhhhcccCCcceee-cchhHHHHHHHHHHHHHHhhcccC
Q psy15864        253 TTLQTYAVGIF-ESIHAPLDP-YFATLLL-GVAELGGALLCVVLIHYTGKRPLAL-ISTGGSAACFIVVAVYAQFHLSYG  328 (553)
Q Consensus       253 ~~~~~~~~~~~-~~~g~~~~~-~~~~~~~-~i~~~~g~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~~~~~~~~~~~  328 (553)
                      ..+..+++.++ ++.+.+... .+..... .++.+++.+++++ +||+|||+.++ .+.++..++.+++.+         
T Consensus        32 ~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~---------  101 (393)
T PRK15011         32 ALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAW---------  101 (393)
T ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHH---------
Confidence            33344444444 455654433 2333333 3455566666666 99999998754 444443444444333         


Q ss_pred             CCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhh--hhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHH
Q psy15864        329 WDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRA--TASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYA  406 (553)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg--~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~  406 (553)
                      ..+.+.+++...+.+...+ ...+....+..+..+++.|.  ...++.+....++.+++|.+.+.+.+..+|...+++.+
T Consensus       102 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~  180 (393)
T PRK15011        102 NRNYFVLLFVGVFLSSFGS-TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA  180 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence            3344444444444443333 33344445666666555443  23366677788999999999999888888887777777


Q ss_pred             HHHHHHHhhheEEcccCC
Q psy15864        407 AISVVGTLYMYFVMPETE  424 (553)
Q Consensus       407 ~~~~~~~~~~~~~~pet~  424 (553)
                      ++.++.+++.++++||.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        181 VAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHHhhcCccC
Confidence            777777676677788764

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.81  E-value=5.1e-08  Score=100.41  Aligned_cols=169  Identities=8%  Similarity=-0.086  Sum_probs=95.4

Q ss_pred             HHhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHh
Q psy15864        246 IGQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQF  323 (553)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~  323 (553)
                      +...........+++.++.+ .|.+. +..+..++..++.+++.++.|+++||+|||++++++..+.+++...+..... 
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-   98 (420)
T PRK09528         20 FFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVF-   98 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-
Confidence            33333344455566666655 67654 3457777888999999999999999999999987765554443322211100 


Q ss_pred             hcccCCCCCh-hHHHHHHHHHHHHhhhhccccceeeccccc--cchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchh
Q psy15864        324 HLSYGWDSPL-VPTVFLVLAAFLTHICIRLLPWMLIGEVFP--NNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWG  400 (553)
Q Consensus       324 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~  400 (553)
                           ..... ......++.++..+.++.... ..+....+  .+.++..+|.......++..+++.+.+.+.+ .++..
T Consensus        99 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~  171 (420)
T PRK09528         99 -----APLLQYNILLGAIVGGIYLGFGFLAGA-GAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQI  171 (420)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhhhhhccch-hhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchH
Confidence                 00000 011112222222222222211 12222222  2345667788888888999999999888765 35566


Q ss_pred             hHHHHHHHHHHHHhhheEEccc
Q psy15864        401 TLYFYAAISVVGTLYMYFVMPE  422 (553)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~pe  422 (553)
                      .+++.++++++..++.++..|+
T Consensus       172 ~f~~~~~~~~~~~~~~~~~~~~  193 (420)
T PRK09528        172 NFWLGSGSALILLVLLFFAKPD  193 (420)
T ss_pred             hHHHHHHHHHHHHHHHhccccc
Confidence            6666555555555555444444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.78  E-value=1.1e-09  Score=114.35  Aligned_cols=291  Identities=15%  Similarity=0.157  Sum_probs=2.7

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----------------------chH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----------------------HWR  144 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----------------------gWr  144 (553)
                      -|.++.|+|+.  .++..+|+-|.++++.-+.++|++.++..+|+++|.++++.+                      .|-
T Consensus       146 ~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv  225 (539)
T PF03137_consen  146 LGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV  225 (539)
T ss_dssp             ------SSS-----------------------------------------------------------------------
T ss_pred             HHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH
Confidence            36788899886  668899999999999999999999999999999998888754                      243


Q ss_pred             HH----HHHHHHHHHHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15864        145 SA----AILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQ  220 (553)
Q Consensus       145 ~~----f~i~~i~~li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (553)
                      .+    |++.+++.++..+.++++|...+-.  ++..++.+....+.     ....       .+...+...  ......
T Consensus       226 GAWWLGfli~g~~~~l~aipl~~FPk~lp~~--~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~~--~~~~~~  289 (539)
T PF03137_consen  226 GAWWLGFLICGILLFLSAIPLFFFPKKLPGT--SERQEEKESSERKE-----EDSD-------KDSFKDPKS--KKSFGK  289 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccCCCc--ccccchhhhhhcch-----hhhh-------hhccccccc--ccchhh
Confidence            34    4444444444444444455432110  00000000000000     0000       000000000  000000


Q ss_pred             CChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCCh-H-HHHHHHHHHHHHHHHHHhhhhccc
Q psy15864        221 RRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLDP-Y-FATLLLGVAELGGALLCVVLIHYT  297 (553)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~-~~~~~~~i~~~~g~~~~g~l~dr~  297 (553)
                      ....+....++....+.++...+...........+..|+|-+++. ++.+... . +...+...++++|.+++|++..|+
T Consensus       290 ~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~  369 (539)
T PF03137_consen  290 SIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKF  369 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEe
Confidence            112222223344455556666666666777777888889988864 4443222 2 333344457788999999999987


Q ss_pred             C--CcceeecchhHHHHHHHHHHHHHHhh----------ccc----------------------------------C-CC
Q psy15864        298 G--KRPLALISTGGSAACFIVVAVYAQFH----------LSY----------------------------------G-WD  330 (553)
Q Consensus       298 G--rr~~l~~~~~~~~i~~~~~~~~~~~~----------~~~----------------------------------~-~~  330 (553)
                      .  .|.++.+.++..+++.+++.......          ..+                                  + ..
T Consensus       370 kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~  449 (539)
T PF03137_consen  370 KLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCN  449 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCccccc
Confidence            4  34454444444444333311111000          000                                  0 01


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHH-HHHHHHHHHhHHHHhhc
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSY-IFAFAVNKLYYPMLDTF  396 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  396 (553)
                      ....+++..++..+..+....|.. ..+-..+|++.|+.++|+...+.+ ++.+-+|.++|.++|..
T Consensus       450 ~~~~Fl~~~~~~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  450 KLIPFLILLFILSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            122233333344444444444443 555688999999999999987765 45578888889888763

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2504|consensus

Probab=98.73  E-value=3.3e-08  Score=102.64  Aligned_cols=179  Identities=15%  Similarity=0.089  Sum_probs=136.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHH
Q psy15864        234 LLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAA  312 (553)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i  312 (553)
                      -|...+..++..+..+.....+..+.+.+.+..+.+.. ..|+.++......+.+++.+.+.||+|.|.+.+++.++..+
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence            33344444455555555555555666777776665443 56888888888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccCCCCChhHHH-HHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHH
Q psy15864        313 CFIVVAVYAQFHLSYGWDSPLVPTV-FLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYP  391 (553)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~  391 (553)
                      ++++..+         +.+.|.+++ ..++.|++.++.+.+.. +.+. .+..+.|+.+.|+......+|.++.|.+..+
T Consensus       124 g~~lssF---------~~~i~~l~lt~gvi~G~G~~~~~~pai-viv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~  192 (509)
T KOG2504|consen  124 GLLLSSF---------ATSLWQLYLTFGVIGGLGLGLIYLPAV-VILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKY  192 (509)
T ss_pred             HHHHHHH---------HhhHHHHHHHHHHHhhccchhhhcchh-hhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHH
Confidence            9998887         555555544 45666777777776664 5555 4556889999999999999999999999999


Q ss_pred             HHhhccchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        392 MLDTFHLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       392 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      +++..||+..+++++.+.+-.++....+.|.+
T Consensus       193 l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~  224 (509)
T KOG2504|consen  193 LLSKYGWRGALLIFGGISLNVLVAGALLRPLS  224 (509)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999998888877777666666644

>KOG2533|consensus

Probab=98.72  E-value=3.5e-08  Score=101.46  Aligned_cols=143  Identities=10%  Similarity=0.008  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhcc
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRL  352 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      .....++.++.++|.++++.+.||++    +-.++..+.+++.+++++..+     ..+.+.+++.+++.|++-+.++.+
T Consensus        84 ~~~~t~F~v~Yii~~~p~~~L~~r~~----ls~~l~~~~~~w~~~~~~~~~-----~~s~~~~ialr~llGl~es~~wP~  154 (495)
T KOG2533|consen   84 GVLDTVFYVGYIIGQFPSGLLGDRFP----LSKGLSVSGILWGLFGFLTAA-----VHSFPGLIALRFLLGLFESGGWPG  154 (495)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHhcccchH
Confidence            46777889999999999999999999    333444444555444433322     456788899999999999888876


Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH------hhccchhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        353 LPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML------DTFHLWGTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       353 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      .. .+++..+..+.||.-+|+.++...+|+++++++...+.      ...||.+.|++-+++.++..+++++++|+...
T Consensus       155 ~~-~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  155 VV-AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HH-HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            65 89999999999999999999999999999998887753      34678889999999999999999999998644

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.72  E-value=1e-07  Score=97.38  Aligned_cols=180  Identities=11%  Similarity=-0.007  Sum_probs=101.1

Q ss_pred             HHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHH
Q psy15864        239 IVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIV  316 (553)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  316 (553)
                      +.+....++.+.+...+..++|.++.+ .+.+. +..+...+..++.+++.++.|+++||+|||+.++.++++.+++...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~   84 (396)
T TIGR00882         5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAP   84 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            334344444445555555566666543 56653 3346777888999999999999999999999988766655544333


Q ss_pred             HHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc
Q psy15864        317 VAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF  396 (553)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~  396 (553)
                      ........ .......+..++.+++.+++.+...... ..+..+..+  .++...|.....+.+|..++|.+.+.+.+ .
T Consensus        85 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~  159 (396)
T TIGR00882        85 FFIYVFGP-LLQSNILVGAIVGGLYLGFVFSAGAGAI-EAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-I  159 (396)
T ss_pred             HHHHHhhh-HHHHHHHHHHHHHHHHHHHHhccchhhH-HHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-c
Confidence            22211000 0000011122233344444443333222 244444322  23445667777788888999988876654 5


Q ss_pred             cchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        397 HLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       397 g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      ++...+++.+++.++..++.+...|+.
T Consensus       160 ~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       160 DPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            666666666666555555444444443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.70  E-value=1.6e-07  Score=95.42  Aligned_cols=167  Identities=13%  Similarity=-0.048  Sum_probs=103.4

Q ss_pred             HHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchh-HHHHHHHHHHHHHH
Q psy15864        245 FIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTG-GSAACFIVVAVYAQ  322 (553)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~-~~~i~~~~~~~~~~  322 (553)
                      ++..+.+...+..++|.++++.+.+.. ..+...+..++.+++.++.|+++||+||+........ ..++..+.+..  .
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF--G   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH--h
Confidence            333444455666777788877776543 3466777788889999999999999999532111111 11111111111  0


Q ss_pred             hhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhH
Q psy15864        323 FHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTL  402 (553)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~  402 (553)
                            .++.+.+++.+++.+++.+... +...+++.+.  .+.|+.+.+.....+.++..++|.+.+.+.+..+|...+
T Consensus        91 ------~~~~~~l~i~~~l~g~~~~~~~-~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f  161 (382)
T PRK11128         91 ------AHSFWLLFVAIGLFNLFFSPLV-PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAIL  161 (382)
T ss_pred             ------cccHHHHHHHHHHHHHHHcccc-cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHH
Confidence                  3456666666776666554433 3333555544  345788888888889999999999999999988877666


Q ss_pred             HHHHHHHHHHHhhheEEcccC
Q psy15864        403 YFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~pet  423 (553)
                      ++.++..++. ++..++.|+.
T Consensus       162 ~~~~~~~~~~-~~~~~~~~~~  181 (382)
T PRK11128        162 WILTAGVASM-LLGQLLRPTI  181 (382)
T ss_pred             HHHHHHHHHH-HHHHHccCCC
Confidence            6555433333 3333445654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.69  E-value=1.6e-07  Score=95.37  Aligned_cols=154  Identities=12%  Similarity=0.001  Sum_probs=100.6

Q ss_pred             HHHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHH-HHHHHHHHHH
Q psy15864        244 FFIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSA-ACFIVVAVYA  321 (553)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~-i~~~~~~~~~  321 (553)
                      .++..+.+......++|.++++.|.+.. ..+...+..+..+++.++.|.++||+||+......+.+.. +..+.+..  
T Consensus        12 ~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~--   89 (382)
T TIGR00902        12 GFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA--   89 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH--
Confidence            3444445556666778888888887643 3466667788888999999999999998543221111111 11111111  


Q ss_pred             HhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhh
Q psy15864        322 QFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGT  401 (553)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~  401 (553)
                      .      .++.+.+++.+.+.+.+.+.. .+...++..+  ..+.|+..+|.....+.+|.+++|.+.+.+.+..+|...
T Consensus        90 ~------~~~~~~l~~~~~l~~~~~~~~-~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~  160 (382)
T TIGR00902        90 G------AHNAWLLFIAIGLFALFFSAG-MPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNI  160 (382)
T ss_pred             h------hhhHHHHHHHHHHHHHHHccc-hhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHH
Confidence            0      445666666666666555443 3444455443  246789999999999999999999999999998887776


Q ss_pred             HHHHHHH
Q psy15864        402 LYFYAAI  408 (553)
Q Consensus       402 ~~~~~~~  408 (553)
                      +.+..++
T Consensus       161 f~~~~~~  167 (382)
T TIGR00902       161 LAILTAG  167 (382)
T ss_pred             HHHHHHH
Confidence            6655444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.62  E-value=1.8e-06  Score=86.45  Aligned_cols=319  Identities=11%  Similarity=-0.000  Sum_probs=161.6

Q ss_pred             hhhhhhhhhccCcc--cccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhcccc----CCc--
Q psy15864        101 VLVLTYVAEITQPH--LRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYFIP----ESP--  168 (553)
Q Consensus       101 ~~~~~~i~e~~p~~--~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~lp----Esp--  168 (553)
                      +.+.++++|.+|++  +|-...+++.++.++|.+++|++..++    ||...|.+.++-..+.++..+..+    .++  
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~  215 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGV  215 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCC
Confidence            35668899999853  577788889999999999999988877    999999988776666554443332    111  


Q ss_pred             --eeeeecCC-hHHHHHHHHHHcCCC-CCcchHHHHHHHHHHHHHHHHH--hcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        169 --HWLISQGR-MQEASASLCWLRGWV-TPDKVQTELSQITKAIEESELK--RLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       169 --~~l~~~~~-~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                        ......+. ..........+.... -.-.....+.............  -.......... ....+-....++++...
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~  294 (498)
T COG3104         216 PDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAV  294 (498)
T ss_pred             CCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHH
Confidence              00001000 000001100000000 0000000000000000000000  00000000000 11111111222333334


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHh--hCCCCChHHHHHHHHHHHHHHHHHHhhhhcccCCc---ce----eecchhHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFES--IHAPLDPYFATLLLGVAELGGALLCVVLIHYTGKR---PL----ALISTGGSAAC  313 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr---~~----l~~~~~~~~i~  313 (553)
                      +++..+.-..+.+..|.....+.  .|++....+..++..+.-++.+++..++.-+++++   +.    +-++++++..+
T Consensus       295 iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~  374 (498)
T COG3104         295 IFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLG  374 (498)
T ss_pred             HHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHH
Confidence            44444444455555665555432  33445666777777777777777777777765443   11    23445555555


Q ss_pred             HHHHHHHHHhhcc-cCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHH-
Q psy15864        314 FIVVAVYAQFHLS-YGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYP-  391 (553)
Q Consensus       314 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~-  391 (553)
                      ++++.....+... ....+.++++...++.+++ -.+..++...+++...|+...+..+++.......+..++..+.+. 
T Consensus       375 fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~g-EL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~  453 (498)
T COG3104         375 FLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFG-ELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLT  453 (498)
T ss_pred             HHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH-HHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccc
Confidence            5555444222221 2234455555555555554 477778888899999999998988888877777777777666552 


Q ss_pred             -----HHhhccchhhHHHHHHHHHHHHhhheEEcc
Q psy15864        392 -----MLDTFHLWGTLYFYAAISVVGTLYMYFVMP  421 (553)
Q Consensus       392 -----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p  421 (553)
                           ..+.......|..++.+.+++.++.+...|
T Consensus       454 ~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~  488 (498)
T COG3104         454 AVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP  488 (498)
T ss_pred             cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence                 222333344555555555555554443333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.61  E-value=4.1e-07  Score=94.15  Aligned_cols=164  Identities=13%  Similarity=0.116  Sum_probs=99.3

Q ss_pred             hhHHHHHH-hhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcc----cCCcc-eeecchhHHHHHHHHHHHHHHhhcccCC
Q psy15864        257 TYAVGIFE-SIHAPL-DPYFATLLLGVAELGGALLCVVLIHY----TGKRP-LALISTGGSAACFIVVAVYAQFHLSYGW  329 (553)
Q Consensus       257 ~~~~~~~~-~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~  329 (553)
                      .|++.++. ..|.+. ...+..++..+..++..++.|+++||    +|||+ .++++.++.+++.+++...+...   ..
T Consensus        20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~---~~   96 (437)
T TIGR00792        20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFS---AT   96 (437)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCC---cc
Confidence            34444443 456543 23466667778899999999999998    67755 45566666666655554421100   00


Q ss_pred             CCChhHHHHHHHHHHHHhhhhccccceeecccc-ccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh-------hccchhh
Q psy15864        330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVF-PNNIRATASGASGSSSYIFAFAVNKLYYPMLD-------TFHLWGT  401 (553)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~g~~~~  401 (553)
                      ...+..++..++++.+.+....+. .++..|+. +++.|+...++......+++.+++.+.+.+..       ..+|...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~-~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~  175 (437)
T TIGR00792        97 GKLVYAYITYILLGLFYSFVNIPY-WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMF  175 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccH-hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHH
Confidence            011233333444454444333333 36777876 56889999888888888887777766666553       2345555


Q ss_pred             HHHHHHHHHHHHhhheEEcccCC
Q psy15864        402 LYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      +.+.+++.++..++.+++.||+.
T Consensus       176 ~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       176 ALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHHHHHcCCEecC
Confidence            66666666666666667777754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.55  E-value=7.2e-07  Score=83.12  Aligned_cols=173  Identities=15%  Similarity=0.095  Sum_probs=109.4

Q ss_pred             HHHHHHhhhhhHHHHhhHHHHHHhhCCCCChH-HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHH
Q psy15864        242 SLFFIGQFGGMTTLQTYAVGIFESIHAPLDPY-FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVY  320 (553)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  320 (553)
                      .++.....+..+.+..|.|.+.+..+++.++. .......+|..+| +++|.+.|++|.+.+++++.+...++..++...
T Consensus         8 ~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~   86 (250)
T PF06813_consen    8 SIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA   86 (250)
T ss_pred             HHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444567888899999998888875544 4444556776665 888999999999999999999998888877654


Q ss_pred             HHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchh
Q psy15864        321 AQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWG  400 (553)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~  400 (553)
                      ..-..  +..+.|.+.+..++.+.+.+.. .+.........|| +.||+++|+.-....+++.+...+...+... ....
T Consensus        87 ~~~~i--~~~~~~~~~~~~~l~~~s~~~~-~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~  161 (250)
T PF06813_consen   87 VSGRI--PSLPVWLMCLFLFLGGNSSCWF-NTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSS  161 (250)
T ss_pred             HhCcc--CccchHHHHHHHHHHcccHHHh-hhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHH
Confidence            32110  0123344444444433332222 1222244457787 5799999999999999998888777766654 2233


Q ss_pred             hHHHHHHHHHHHHhhheEEc
Q psy15864        401 TLYFYAAISVVGTLYMYFVM  420 (553)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~  420 (553)
                      .+...+..+.++.++..+++
T Consensus       162 fll~la~~~~~v~l~~~~~v  181 (250)
T PF06813_consen  162 FLLFLAVLPAVVCLVAMFFV  181 (250)
T ss_pred             HHHHHHHHHHHHHHHHhhhe
Confidence            34444444444444443333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.53  E-value=1.1e-06  Score=85.40  Aligned_cols=136  Identities=10%  Similarity=-0.156  Sum_probs=105.3

Q ss_pred             hHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCC
Q psy15864        252 MTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWD  330 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  330 (553)
                      ........|.+.+....+. +..+.......+..++++.++++.+|+|+|..+++++.+++++++++.-...      ..
T Consensus        29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~------~~  102 (422)
T COG0738          29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS------SK  102 (422)
T ss_pred             hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh------hh
Confidence            3344455666666666653 4457778888999999999999999999999999999999999988864332      33


Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD  394 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~  394 (553)
                      +...++++.++.+.+.+..-.. ...|++.+.|++..+.-+.+.+.+..+|++++|+++++++.
T Consensus       103 ~y~~FL~~lFila~Gi~~Leta-aNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         103 SYGFFLVALFILASGIGLLETA-ANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hHHHHHHHHHHHHhhhHHHHhc-cchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            4555666667777766554444 45899999998777778899999999999999999998876

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.52  E-value=1.4e-06  Score=88.83  Aligned_cols=177  Identities=14%  Similarity=0.070  Sum_probs=103.5

Q ss_pred             HHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCChH-HH--HHHHHHHHHHHHHHH-hhhhcccCCcceeecchhHHHH-H
Q psy15864        239 IVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPY-FA--TLLLGVAELGGALLC-VVLIHYTGKRPLALISTGGSAA-C  313 (553)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~--~~~~~i~~~~g~~~~-g~l~dr~Grr~~l~~~~~~~~i-~  313 (553)
                      ..++..++.+...+.....++|.++++.|.+.+.. ..  ..+..+..++.+++. ++..||+|||+..++.+.+... +
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~   83 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC   83 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence            34455566777777788889999999888765443 22  233456666666666 5578999999886555433222 2


Q ss_pred             HHHHHHHHHhhcccCCCC-ChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        314 FIVVAVYAQFHLSYGWDS-PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      ...+.....      ... ....+...++..++ .....+....+..|..+.+.++.+.+.......+|..+++.+.+++
T Consensus        84 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l  156 (390)
T TIGR02718        84 LASLALVGP------DVAGAGWAVGLLACASLA-SATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL  156 (390)
T ss_pred             HHHHHcCCc------chhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222221100      111 11222222222222 2222233334556667777767766666666678888888878888


Q ss_pred             HhhccchhhHHHHHHHHHHHHhhheEEccc
Q psy15864        393 LDTFHLWGTLYFYAAISVVGTLYMYFVMPE  422 (553)
Q Consensus       393 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~pe  422 (553)
                      .+..+|...+++.+++.++..+..+++.|+
T Consensus       157 ~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       157 FGKFGQRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            888888778877777766655555444444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2816|consensus

Probab=98.52  E-value=4.8e-07  Score=92.43  Aligned_cols=253  Identities=17%  Similarity=0.115  Sum_probs=152.0

Q ss_pred             ccchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHH-hccccCCceeee
Q psy15864         98 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCA-LYFIPESPHWLI  172 (553)
Q Consensus        98 a~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~-~~~lpEsp~~l~  172 (553)
                      +....+.+|++|....++|....++....+..+..++|.+++.+    |.-.+|.+..+..++.++. ++++||+-.-  
T Consensus       128 ~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~--  205 (463)
T KOG2816|consen  128 AIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE--  205 (463)
T ss_pred             hhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc--
Confidence            34556779999999999999999999998888888888887766    7778888888888877554 4558987421  


Q ss_pred             ecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhh---
Q psy15864        173 SQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQF---  249 (553)
Q Consensus       173 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  249 (553)
                       +.+.+   .......   .........                     ...+.........+..+.++....+...   
T Consensus       206 -~~~~~---~~~~~~~---~~~~~~~~~---------------------~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~  257 (463)
T KOG2816|consen  206 -KERSD---ATLRELT---PGSLDSSHV---------------------ADAFQSLTKVGPDRLLLLLLLVAFLSSLPEA  257 (463)
T ss_pred             -ccccc---ccccccC---CCcccchhh---------------------hhhhhhhcccCCCccchHHHHHHHHHHHHHh
Confidence             00000   0000000   000000000                     0111111111111111111211111111   


Q ss_pred             hhhH-HHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHh-hhhcccCCcceeecchhHHHHHHHHHHHHHHhhcc
Q psy15864        250 GGMT-TLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCV-VLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLS  326 (553)
Q Consensus       250 ~~~~-~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g-~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~  326 (553)
                      .+.. ...+|+..   ..+.+... ....+..++...++.++.. .+...+|-|+++..|+....+..++.++       
T Consensus       258 ~~~~~~~~~yl~~---~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af-------  327 (463)
T KOG2816|consen  258 GGASDVLLLYLKA---KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAF-------  327 (463)
T ss_pred             cCceeEEEEEEee---ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHH-------
Confidence            1111 11122111   23443333 3445555666666666665 6778888888888888888888888887       


Q ss_pred             cCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q psy15864        327 YGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD  394 (553)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~  394 (553)
                        .+..|+++....+..+..  ...+...++++-+..++.+|.+.++...+..+.++++|.+.+.+..
T Consensus       328 --~~~~w~~~~~~v~~~~~~--~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  328 --ATETWMMFAAGVVVALAG--IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             --hccchhhhHHHHHHHhhc--chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence              667777777666655533  3334445777888899999999999999999999999999887754

>KOG2325|consensus

Probab=98.51  E-value=2.8e-07  Score=93.03  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=61.5

Q ss_pred             ccccccccccccc-chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----------------chHHHHH
Q psy15864         87 EEKGTFLYKMAAP-LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----------------HWRSAAI  148 (553)
Q Consensus        87 ~~~gr~~~G~ga~-~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----------------gWr~~f~  148 (553)
                      ---+|++.|+|.+ ..+.=+|+++....+.|.++++....+..+|.++||.+...+                 -+-.+-|
T Consensus       133 mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w  212 (488)
T KOG2325|consen  133 MLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAW  212 (488)
T ss_pred             HHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHH
Confidence            3468999999965 455669999999999999999999988888888888776543                 1345567


Q ss_pred             HHHHHHHHHHHHh-ccccCCce
Q psy15864        149 LNLLFPILALCAL-YFIPESPH  169 (553)
Q Consensus       149 i~~i~~li~~i~~-~~lpEsp~  169 (553)
                      +++++.++.+++. +++.|.++
T Consensus       213 ~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  213 LMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHHHHHHHHHHHHhheeeccc
Confidence            7777777765444 44777654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.51  E-value=3.8e-07  Score=91.16  Aligned_cols=141  Identities=13%  Similarity=-0.005  Sum_probs=101.5

Q ss_pred             CCCChH-HHHHHHHHHHHHHHHHHhhhhcc-cCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHH
Q psy15864        268 APLDPY-FATLLLGVAELGGALLCVVLIHY-TGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFL  345 (553)
Q Consensus       268 ~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (553)
                      ++.+.. .....++.-.-+..+++||++|| +|+|++++++.++++++-++++...       ......+++...+.+++
T Consensus        58 ~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~-------~~~~~gl~i~L~~I~iG  130 (498)
T COG3104          58 FDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS-------VSGPGGLYIGLALIIVG  130 (498)
T ss_pred             cChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-------cccccHHHHHHHHHHhc
Confidence            544333 33334444455677889999999 5999999999999999999988721       03455667777776766


Q ss_pred             Hhhhhccccceeeccccccc--hhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhh
Q psy15864        346 THICIRLLPWMLIGEVFPNN--IRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYM  416 (553)
Q Consensus       346 ~~~~~~~~~~~~~~e~~p~~--~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  416 (553)
                      .|..=..+ ...++|++|+.  .|-.+.++.+...++|++++|.+.+++.+..+|...|.+.++-..+.++..
T Consensus       131 ~Gl~K~Ni-S~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f  202 (498)
T COG3104         131 TGLFKPNI-SSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF  202 (498)
T ss_pred             cccccccH-HHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence            65544444 48889999864  366677888888999999999999999999997766666555554444443

>KOG2816|consensus

Probab=98.48  E-value=1.3e-06  Score=89.42  Aligned_cols=138  Identities=15%  Similarity=0.115  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceee
Q psy15864        279 LGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLI  358 (553)
Q Consensus       279 ~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      .++..++.+++.|.++|++|||..+.+..+...+..+.+.+.         .  |+.++..-+.|..  .+.....++|+
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~---------~--~~~~~~~~l~g~~--~~~~s~~~a~v  137 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ---------G--YWFFLLLGLSGGF--SAIFSVGFAYV  137 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH---------H--HHHhhhcccccch--hhhhhhhhhhe
Confidence            467788899999999999999999988888877777766652         1  2222222222222  22234446999


Q ss_pred             ccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccCCCCChH
Q psy15864        359 GEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLR  429 (553)
Q Consensus       359 ~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~  429 (553)
                      +++...+.|....|+.......+..++|.+.+.+....+....+.+.++..++..+..++++||+...+.+
T Consensus       138 adis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  138 ADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             eeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            99999999999999999999999999999999999988888888888888899999999999998655443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.42  E-value=1.9e-07  Score=95.88  Aligned_cols=290  Identities=15%  Similarity=0.169  Sum_probs=141.1

Q ss_pred             hhhhhccC--cccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhcc-ccCCceeeeecCCh
Q psy15864        105 TYVAEITQ--PHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYF-IPESPHWLISQGRM  177 (553)
Q Consensus       105 ~~i~e~~p--~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~-lpEsp~~l~~~~~~  177 (553)
                      +++.|...  ++.||...+.......+|.+++..+++.+    ++|+.|.+.+++.++.++..++ .+|.+..  ..   
T Consensus       109 a~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~--~~---  183 (433)
T PF03092_consen  109 ALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVR--PA---  183 (433)
T ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcccc--cc---
Confidence            66677663  33478888888888888999888877765    8999999988887777655555 4442110  00   


Q ss_pred             HHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHh
Q psy15864        178 QEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQT  257 (553)
Q Consensus       178 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (553)
                      ++...    ..   .. ..........+...              ..++.+..+..+...+...++..+..........+
T Consensus       184 ~~~~~----~~---~~-~~~~~~~~~~~~~~--------------~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy  241 (433)
T PF03092_consen  184 DEVFS----FG---KE-EVPCLFGSFREQLS--------------ELWRALQQRAIWQPILFFIFFFNLPPSISSASSFY  241 (433)
T ss_pred             chhhc----cc---cc-ccchhhHHHHHHHH--------------HHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEE
Confidence            00000    00   00 00000000000000              11111222222222221111111111111010111


Q ss_pred             hHHHHHHhhCCCCChH---HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHH-hhcccCCCCCh
Q psy15864        258 YAVGIFESIHAPLDPY---FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQ-FHLSYGWDSPL  333 (553)
Q Consensus       258 ~~~~~~~~~g~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~  333 (553)
                      +......  |...+..   ....+..++.++|..+.....-+..-|+++.++.++.++..+.-..+.. +....+....+
T Consensus       242 ~~~~~~~--gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~  319 (433)
T PF03092_consen  242 FQTDALG--GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQW  319 (433)
T ss_pred             EEecccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeE
Confidence            2111111  2222222   2233445556666666555444445455554444433333222111100 00011112234


Q ss_pred             hHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc-------hhhHHHHH
Q psy15864        334 VPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL-------WGTLYFYA  406 (553)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~-------~~~~~~~~  406 (553)
                      ..+....+..+.....+.|.. ..+++++|+..-|+.+++...+.+++..++..+...+.+..+.       -+..++.+
T Consensus       320 f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~  398 (433)
T PF03092_consen  320 FALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILIC  398 (433)
T ss_pred             EEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHH
Confidence            444455566666667777775 7889999999999999999999999999999888887765442       12223333


Q ss_pred             HHHHHHHhhheEEcccCC
Q psy15864        407 AISVVGTLYMYFVMPETE  424 (553)
Q Consensus       407 ~~~~~~~~~~~~~~pet~  424 (553)
                      .++.++.+....++|+.+
T Consensus       399 ~~~~ll~l~ll~lLp~~~  416 (433)
T PF03092_consen  399 SVIQLLPLPLLFLLPPQK  416 (433)
T ss_pred             HHHHHHHHHHHHHcCCCc
Confidence            333344444445666643

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3762|consensus

Probab=98.39  E-value=6e-07  Score=89.89  Aligned_cols=132  Identities=14%  Similarity=0.097  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccc
Q psy15864        274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLL  353 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      .......++.++.-++.+++..++|+-+++.+++.+.++=.+.+..         ..+.|+.+.+-++-++..+..|.++
T Consensus       410 v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~---------L~n~W~vLPieilqgit~aliWaa~  480 (618)
T KOG3762|consen  410 VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSY---------LQNPWMVLPIEILQGITHALIWAAI  480 (618)
T ss_pred             ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHH---------hcCchheeeHHHHHHHHHHHHHHHH
Confidence            3444556778888899999999999999999998888777777666         6788999999999999999999888


Q ss_pred             cceeeccccccchhhhhhhHHHHH-HHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhh
Q psy15864        354 PWMLIGEVFPNNIRATASGASGSS-SYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLY  415 (553)
Q Consensus       354 ~~~~~~e~~p~~~Rg~~~~~~~~~-~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  415 (553)
                      . +|++...||+.|+++.++.... ..+|-.++++++|.+...++....+.++++.+++.+++
T Consensus       481 ~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  481 I-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             H-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence            6 9999999999999999988766 44666777778888888877666666666655555443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.38  E-value=7.8e-06  Score=78.96  Aligned_cols=156  Identities=12%  Similarity=0.029  Sum_probs=99.6

Q ss_pred             HHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHH
Q psy15864        261 GIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFL  339 (553)
Q Consensus       261 ~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (553)
                      .+++.+|++... ........+..++...+.|.++||+|||+..++.+++..++++...          ..+.+.+++++
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~----------~~~~~~L~~GR  128 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH----------SSNYPVLLLGR  128 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh----------ccccHHHHHHH
Confidence            445667876544 3455555566777778889999999999998888888888876443          56788899999


Q ss_pred             HHHHHHHhhhhccccceeeccc----cccchhhhhhhHHHHH-HHHHHHHHHHHhHHHHhhccc--hhhHHHHHHHHHHH
Q psy15864        340 VLAAFLTHICIRLLPWMLIGEV----FPNNIRATASGASGSS-SYIFAFAVNKLYYPMLDTFHL--WGTLYFYAAISVVG  412 (553)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~e~----~p~~~Rg~~~~~~~~~-~~~~~~i~~~~~~~~~~~~g~--~~~~~~~~~~~~~~  412 (553)
                      ++.|++....+.+.-.=++.|.    +|.+..+...+...+. ..+.+++++.+.-.+.+..+.  ..++.....+.++.
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~  208 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA  208 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            9999887766654321233343    4444444444444422 334445555555555555443  44566666666666


Q ss_pred             HhhheEEcccCCCC
Q psy15864        413 TLYMYFVMPETEGR  426 (553)
Q Consensus       413 ~~~~~~~~pet~~~  426 (553)
                      .+++....+|..+.
T Consensus       209 ~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  209 AVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHhcccccCCC
Confidence            66666677787654

>TIGR00889 2A0110 nucleoside transporter

Probab=98.35  E-value=3.7e-06  Score=86.37  Aligned_cols=157  Identities=13%  Similarity=0.022  Sum_probs=84.4

Q ss_pred             hhHHHHhhHHHHH-HhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCC-cceeecchhHHHHHHHHHHHHHHhhccc
Q psy15864        251 GMTTLQTYAVGIF-ESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGK-RPLALISTGGSAACFIVVAVYAQFHLSY  327 (553)
Q Consensus       251 ~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~~  327 (553)
                      .+.....+++.++ +..|.+. +..+...+..++.++++++.|+++||+|| |+++.++.++..++..+..+        
T Consensus        17 ~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~--------   88 (418)
T TIGR00889        17 IWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ--------   88 (418)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--------
Confidence            3333434444444 4456654 34577788899999999999999999965 66666665555454444433        


Q ss_pred             CCCCChhHHHHHHHHHHHHhhhhccc---cceeec----cccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchh
Q psy15864        328 GWDSPLVPTVFLVLAAFLTHICIRLL---PWMLIG----EVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWG  400 (553)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~  400 (553)
                       .++.+.+++.+++.+++.+......   ...+..    |+.....|.+..|      .+|.+++|.+.+.+ .....+.
T Consensus        89 -~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l-~~~~~~~  160 (418)
T TIGR00889        89 -VTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL-DIELSNI  160 (418)
T ss_pred             -hcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh-cccchhH
Confidence             3445555555555555432222111   112211    2222222333333      35667777777655 2222234


Q ss_pred             hHHHHHHHHHHHHhhheEEcccCC
Q psy15864        401 TLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      ++++.+++.++..++ .+++||+.
T Consensus       161 ~f~~~~~~~~~~~~~-~~~~~e~~  183 (418)
T TIGR00889       161 QLYITAGSSALLGVF-ALTLPDIP  183 (418)
T ss_pred             HHHHHHHHHHHHHHH-HhcCCCCC
Confidence            455555555544443 45778763

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.30  E-value=9e-06  Score=85.01  Aligned_cols=166  Identities=12%  Similarity=0.065  Sum_probs=90.5

Q ss_pred             hHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhc----ccCCc-ceeecchhHHHHHHHHHHHHHHhh
Q psy15864        252 MTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIH----YTGKR-PLALISTGGSAACFIVVAVYAQFH  324 (553)
Q Consensus       252 ~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~d----r~Grr-~~l~~~~~~~~i~~~~~~~~~~~~  324 (553)
                      ...+..|++.++.+ .|.+.. .....++.-+..++..++.|+++|    |+||| +.++++.++++++.+++...+.  
T Consensus        22 ~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~--   99 (473)
T PRK10429         22 IGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHL--   99 (473)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCC--
Confidence            34444555555544 465532 235555666777888899999999    56985 4555566665555444432110  


Q ss_pred             cccCCCC--ChhHHHHHHHHHHHHhhhhccccceeecccc-ccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-----
Q psy15864        325 LSYGWDS--PLVPTVFLVLAAFLTHICIRLLPWMLIGEVF-PNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF-----  396 (553)
Q Consensus       325 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----  396 (553)
                         ....  .+.+++..+++..++.....|. .++..|+. +++.|....+.-..+..+++.+++.+...++...     
T Consensus       100 ---~~~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~  175 (473)
T PRK10429        100 ---FEGTAQYVFVCVTYILWGMTYTIMDIPF-WSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDR  175 (473)
T ss_pred             ---CCccHHHHHHHHHHHHHHHHHHHHcchH-HhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence               0111  1122223333344443343333 37778988 5889999888766666777666655554443222     


Q ss_pred             --cchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        397 --HLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       397 --g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                        ++.....+++++.++..++.++..+|.
T Consensus       176 ~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        176 GFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence              222333444444455555555556664

>PRK09669 putative symporter YagG; Provisional

Probab=98.30  E-value=6.1e-06  Score=85.63  Aligned_cols=166  Identities=13%  Similarity=0.082  Sum_probs=92.3

Q ss_pred             HHHhhHHHHHH-hhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcc----cCCcce-eecchhHHHHHHHHHHHHHHhhcc
Q psy15864        254 TLQTYAVGIFE-SIHAPLD-PYFATLLLGVAELGGALLCVVLIHY----TGKRPL-ALISTGGSAACFIVVAVYAQFHLS  326 (553)
Q Consensus       254 ~~~~~~~~~~~-~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr----~Grr~~-l~~~~~~~~i~~~~~~~~~~~~~~  326 (553)
                      .+..|++.++. ..|.+.. .....++.-+...+..++.|+++||    +|||+. ++++.++.+++.+++...+..   
T Consensus        27 ~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~---  103 (444)
T PRK09669         27 TVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDF---  103 (444)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCC---
Confidence            33444444443 4565532 2355556667788889999999999    677554 445656665655444332100   


Q ss_pred             cCCCCChhHHHHHHHHHHHHhhhhccccceeecccc-ccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-------cc
Q psy15864        327 YGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVF-PNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF-------HL  398 (553)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------g~  398 (553)
                      ......+..++..++++.++.....|. .++.+|+. +++.|+...+....+..+|+.+++.+...+....       +|
T Consensus       104 ~~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~  182 (444)
T PRK09669        104 GATGKIIYACVTYILLSLVYTAINVPY-CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGY  182 (444)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhhcchH-HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH
Confidence            001112233333334444444333333 36778887 5678888888877777787777776555544332       33


Q ss_pred             hhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        399 WGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      ...+.+++++.+++.++.++..+|.
T Consensus       183 ~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        183 FYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            3344455555555555555555553

>TIGR00788 fbt folate/biopterin transporter

Probab=98.23  E-value=7.5e-06  Score=85.23  Aligned_cols=172  Identities=14%  Similarity=0.000  Sum_probs=97.2

Q ss_pred             HHHHHHHHhhhhhHHHHhhHHHHHH-hhCCCCChH-HHHHHHHHHHHHHHHHHhhhhcccC-----CcceeecchhHHHH
Q psy15864        240 VTSLFFIGQFGGMTTLQTYAVGIFE-SIHAPLDPY-FATLLLGVAELGGALLCVVLIHYTG-----KRPLALISTGGSAA  312 (553)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr~G-----rr~~l~~~~~~~~i  312 (553)
                      ++...++.+... .......+.++. ..|.+.... ....+..+...+-.+ .|+++|+++     ||+.++++.++.. 
T Consensus        30 ~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~-  106 (468)
T TIGR00788        30 IGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGS-  106 (468)
T ss_pred             HHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHH-
Confidence            333344555544 444444444444 467765443 445555666666545 999999997     5666665554432 


Q ss_pred             HHHHHHHHHHhhcccCCCCChhHH-HHHHHHHHHHhhhhccccceeeccccccchhhhhh---hHHHHHHHHHHHHHHHH
Q psy15864        313 CFIVVAVYAQFHLSYGWDSPLVPT-VFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATAS---GASGSSSYIFAFAVNKL  388 (553)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~---~~~~~~~~~~~~i~~~~  388 (553)
                       .+.+..+..      ..+..... +..++.+++.+..- ...-.+..|..+ +.++.+.   ++......+|..+++.+
T Consensus       107 -~~~~~~l~~------~~~~~~~~~~~~~l~~~~~a~~d-v~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l  177 (468)
T TIGR00788       107 -AILYGLLPG------KVSSAKVAAAFIFLAALAKALYD-VLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLL  177 (468)
T ss_pred             -HHHHHhccc------ccchHHHHHHHHHHHHHHHHHHH-HhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHH
Confidence             111111110      12222222 24445555444443 334578889887 4444433   33334445789999999


Q ss_pred             hHHHHhhccchhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        389 YYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       389 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      .+.+.+..+|...+++.+++.++. ++.++++||.+
T Consensus       178 ~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~  212 (468)
T TIGR00788       178 GGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR  212 (468)
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence            999888888777777776666655 44456678864

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.21  E-value=8.4e-06  Score=84.15  Aligned_cols=162  Identities=17%  Similarity=0.025  Sum_probs=97.2

Q ss_pred             hHHHHH-HhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhc----ccCCccee-ecchhHHHHHHHHHHHH-HHhhcccCC
Q psy15864        258 YAVGIF-ESIHAPLDP-YFATLLLGVAELGGALLCVVLIH----YTGKRPLA-LISTGGSAACFIVVAVY-AQFHLSYGW  329 (553)
Q Consensus       258 ~~~~~~-~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~d----r~Grr~~l-~~~~~~~~i~~~~~~~~-~~~~~~~~~  329 (553)
                      |+..++ +..|.+... ....++.-+..++..++.|.++|    |+|||+.. +++.++.+++.+++... +.-.  ...
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~--~~~  100 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGL--SFT  100 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchh--hhh
Confidence            434443 334654322 23344445566666779999999    78976655 45666666666665542 1000  000


Q ss_pred             CCChhHHHHHHHHHHHHhhhhccccceeeccccc-cchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-------cchhh
Q psy15864        330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFP-NNIRATASGASGSSSYIFAFAVNKLYYPMLDTF-------HLWGT  401 (553)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------g~~~~  401 (553)
                      .......+..+++.++......+. .++.+|+.+ ++.|....+.-..+..+|+++.+.+.+.+....       ++...
T Consensus       101 ~~~~~~~~~~~l~~~~~t~~~i~~-~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~  179 (428)
T PF13347_consen  101 AKLVWLFVFYILFDIAYTFVQIPY-NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM  179 (428)
T ss_pred             hHHHHHHHHHHHHHHhhhhccCch-hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence            111223444444555554444444 378899987 578999988888888888876776766665433       34455


Q ss_pred             HHHHHHHHHHHHhhheEEccc
Q psy15864        402 LYFYAAISVVGTLYMYFVMPE  422 (553)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~pe  422 (553)
                      ..+++++.++..++.++..+|
T Consensus       180 ~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  180 ALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHhhhhhheeee
Confidence            566677777777777788888

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.09  E-value=7.1e-06  Score=81.42  Aligned_cols=266  Identities=11%  Similarity=0.077  Sum_probs=137.2

Q ss_pred             hhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc------chHHHHHHHHHHHHHHHHHhccccCCceeeeecC
Q psy15864        102 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL------HWRSAAILNLLFPILALCALYFIPESPHWLISQG  175 (553)
Q Consensus       102 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l------gWr~~f~i~~i~~li~~i~~~~lpEsp~~l~~~~  175 (553)
                      +-++|+--..|+++--++.+...++..+|.+++.++|..+      +.+.++.+......+++++.+++|..++-+.-+.
T Consensus       113 ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r  192 (412)
T PF01770_consen  113 AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR  192 (412)
T ss_pred             HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence            3347787788888888899888888888888888777765      6677777776666666777777877554221111


Q ss_pred             ChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhh---hhhhcchhHHHHHHHHHHHHhhhhh
Q psy15864        176 RMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRM---YMRRTFLLPYAIVTSLFFIGQFGGM  252 (553)
Q Consensus       176 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  252 (553)
                      +...... ..........+..+..        .................+..   -++..+..+.++...+++....+++
T Consensus       193 ~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy  263 (412)
T PF01770_consen  193 KPPAEQD-ANESESDKMNESPESS--------SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGY  263 (412)
T ss_pred             cCccccc-cccccccccccccccc--------cccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHH
Confidence            1100000 0000000000000000        00000000000000011111   1223334555677777888888888


Q ss_pred             HHHHhhHHHHHHhhCCCC-Ch---HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccC
Q psy15864        253 TTLQTYAVGIFESIHAPL-DP---YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYG  328 (553)
Q Consensus       253 ~~~~~~~~~~~~~~g~~~-~~---~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  328 (553)
                      ..+..|...+......+. ..   +..-.+..+.+.++++..|++..++.+..-+.++..-...+.+++....       
T Consensus       264 ~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~-------  336 (412)
T PF01770_consen  264 YQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF-------  336 (412)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            888888888887662221 22   2344455566677778888886666554433333222222222222111       


Q ss_pred             CCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHH
Q psy15864        329 WDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFA  384 (553)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i  384 (553)
                      ..+.|..+++.+++...+.+...... .-++.....+.-|...|+..++..+...+
T Consensus       337 t~~Iwv~Y~~yIif~~~y~fliTiA~-~qIA~~l~~e~yaLVFGiNtf~Al~LQti  391 (412)
T PF01770_consen  337 TGNIWVCYAGYIIFRSLYMFLITIAS-FQIAKNLSEERYALVFGINTFVALVLQTI  391 (412)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence            56778888777777776655443332 33333333444466666665555444433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11462 putative transporter; Provisional

Probab=98.03  E-value=8.2e-05  Score=77.37  Aligned_cols=167  Identities=10%  Similarity=0.030  Sum_probs=94.0

Q ss_pred             HHHHhhHHHHHH-hhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcc----cCCccee-ecchhHHHHHHHHHHHHHHhhc
Q psy15864        253 TTLQTYAVGIFE-SIHAPLD-PYFATLLLGVAELGGALLCVVLIHY----TGKRPLA-LISTGGSAACFIVVAVYAQFHL  325 (553)
Q Consensus       253 ~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr----~Grr~~l-~~~~~~~~i~~~~~~~~~~~~~  325 (553)
                      ..+..|+..++. ..|.+.. .....++.-+.-.+.-++.|+++||    +|||+.. +++.++++++.+++...+.+  
T Consensus        26 ~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~--  103 (460)
T PRK11462         26 DNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDL--  103 (460)
T ss_pred             HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCC--
Confidence            333444444443 3455422 2244445556677888999999997    6876554 45656666665544432110  


Q ss_pred             ccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccc-cchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc-------
Q psy15864        326 SYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFP-NNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH-------  397 (553)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-------  397 (553)
                       ........+++..+++..++.....|. .++.+|+.+ ++.|+...++-..++.+++.+++.+...+....+       
T Consensus       104 -s~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g  181 (460)
T PRK11462        104 -SMNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLG  181 (460)
T ss_pred             -CcchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence             000111223333334444444444444 377788876 7899999998888888888777777665554332       


Q ss_pred             chhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        398 LWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      +.....+++++.+++.++++...+|.
T Consensus       182 ~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        182 FQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcceec
Confidence            33334445555555555555555654

>KOG2325|consensus

Probab=97.99  E-value=2.8e-05  Score=78.80  Aligned_cols=145  Identities=10%  Similarity=0.008  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCC-cceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhc
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGK-RPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIR  351 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (553)
                      .+......++.++++++.|+...|.+. |+.++.++++++++.++...+....    ....+.+++++++.|++.+..  
T Consensus        74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~----~~~~y~mL~~R~l~Gvg~~n~--  147 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP----NGVKYLMLVARILTGVGVGNF--  147 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHcCcCcccH--
Confidence            367777889999999999999999886 8888899999999999885554321    226677888899888865433  


Q ss_pred             cccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh------------cc-chhhHHHHHHHHHHHHhhheE
Q psy15864        352 LLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT------------FH-LWGTLYFYAAISVVGTLYMYF  418 (553)
Q Consensus       352 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~------------~g-~~~~~~~~~~~~~~~~~~~~~  418 (553)
                      .+.=.|+++..-.+.|.++++.......++.++||.+...+..-            +. +..+.++.+++.++..+++++
T Consensus       148 a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~  227 (488)
T KOG2325|consen  148 AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF  227 (488)
T ss_pred             HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence            33348999988888888888877766666666666554433210            11 123445556666666677777


Q ss_pred             EcccC
Q psy15864        419 VMPET  423 (553)
Q Consensus       419 ~~pet  423 (553)
                      ++.|-
T Consensus       228 ~f~E~  232 (488)
T KOG2325|consen  228 FFKEV  232 (488)
T ss_pred             heeec
Confidence            77775

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.96  E-value=0.0001  Score=70.95  Aligned_cols=155  Identities=19%  Similarity=0.095  Sum_probs=116.7

Q ss_pred             hhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccC
Q psy15864        250 GGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYG  328 (553)
Q Consensus       250 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  328 (553)
                      ..+..+...++.+.++.+.+.+ ..+.+.+..++..+.++++.+++.|+|..+.+.+++++.+++.++=..         
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~---------   96 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL---------   96 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---------
Confidence            3455566667777777777644 346677777777888899999999999999988888877777765443         


Q ss_pred             CCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-cchhhHHHHHH
Q psy15864        329 WDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF-HLWGTLYFYAA  407 (553)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-g~~~~~~~~~~  407 (553)
                       .+.+.++.+..+.+.+.+.+-.-+| ..+-+-||.+. +..+|++.....+++.+++.+..++.++. +|...+.+++.
T Consensus        97 -~~~~~L~~gt~l~G~gIav~nVLLP-slIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl  173 (395)
T COG2807          97 -GGLPLLFLGTLLAGAGIAVINVLLP-SLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWAL  173 (395)
T ss_pred             -ccHHHHHHHHHHHHhhHHHHHHhhh-HHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHH
Confidence             2456677777788887776665665 77888898776 88999999999999999999988888776 56666666666


Q ss_pred             HHHHHHhhh
Q psy15864        408 ISVVGTLYM  416 (553)
Q Consensus       408 ~~~~~~~~~  416 (553)
                      .+++.+++.
T Consensus       174 ~allAl~~W  182 (395)
T COG2807         174 LALLALLIW  182 (395)
T ss_pred             HHHHHHHHH
Confidence            666655543

>PRK09848 glucuronide transporter; Provisional

Probab=97.90  E-value=0.00012  Score=75.99  Aligned_cols=117  Identities=11%  Similarity=0.000  Sum_probs=58.5

Q ss_pred             hhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhccc----CCccee-ecchhHHHHHHHHHHHHHHhhcccCC
Q psy15864        257 TYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYT----GKRPLA-LISTGGSAACFIVVAVYAQFHLSYGW  329 (553)
Q Consensus       257 ~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~----Grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~  329 (553)
                      .|++.++.+ .|++. ......++..+..++..++.|+++||.    |||+.. +++.++..+..+++...+. .. ...
T Consensus        29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~  106 (448)
T PRK09848         29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPT-DW-SHS  106 (448)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcC-CC-Ccc
Confidence            334444443 46653 234666677788899999999999996    666544 4444444444333322110 00 000


Q ss_pred             CCChhHHHHHHHHHHHHhhhhccccceeecccc-ccchhhhhhhHHHH
Q psy15864        330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVF-PNNIRATASGASGS  376 (553)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~Rg~~~~~~~~  376 (553)
                      ...+..++..++.+.+.+....+.. ++..++. +++.|....++-..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~r~~~~~~r~~  153 (448)
T PRK09848        107 SKVVYAYLTYMGLGLCYSLVNIPYG-SLATAMTQQPQSRARLGAARGI  153 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccHh-hhhhhhcCCHHHHHHHHHHHHH
Confidence            1111222333444444444443332 4445554 44667776554433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.85  E-value=0.00014  Score=78.00  Aligned_cols=149  Identities=10%  Similarity=-0.107  Sum_probs=92.0

Q ss_pred             hCCCCChH-HHHHHHHHHHHHHHHHHhhhhcc-cCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q psy15864        266 IHAPLDPY-FATLLLGVAELGGALLCVVLIHY-TGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAA  343 (553)
Q Consensus       266 ~g~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (553)
                      .+++.... .....+....-+..+++|+++|+ +||+++++++.++..++.+++++..... ..........+++..+..
T Consensus        18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~-~~~~~~~~~~l~gLaLia   96 (654)
T TIGR00926        18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPS-SGHPLHDLLDLLGLALIA   96 (654)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcc-cccchHHHHHHHHHHHHH
Confidence            45443322 33334444455667788899996 7999999999988888887776521100 000001122444555555


Q ss_pred             HHHhhhhccccceeeccccccc---hhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-------cchhhHHHHHHHHHHHH
Q psy15864        344 FLTHICIRLLPWMLIGEVFPNN---IRATASGASGSSSYIFAFAVNKLYYPMLDTF-------HLWGTLYFYAAISVVGT  413 (553)
Q Consensus       344 ~~~~~~~~~~~~~~~~e~~p~~---~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~  413 (553)
                      ++.|..-..+. +...|.++++   .|-....+.+.+.++|+++++.+.+++.+..       +|+..+.+.+++.++++
T Consensus        97 ~G~GgiKp~vs-af~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~  175 (654)
T TIGR00926        97 LGTGGIKPCVS-AFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL  175 (654)
T ss_pred             hhccccccCch-hhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence            55555544444 8888888754   3666778888889999999998888876443       45556666555555555


Q ss_pred             hhh
Q psy15864        414 LYM  416 (553)
Q Consensus       414 ~~~  416 (553)
                      ++.
T Consensus       176 lvf  178 (654)
T TIGR00926       176 IVF  178 (654)
T ss_pred             HHH
Confidence            444

>KOG3810|consensus

Probab=97.84  E-value=0.00013  Score=69.34  Aligned_cols=257  Identities=12%  Similarity=0.082  Sum_probs=139.6

Q ss_pred             hhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc------chHHHHHHHHHHHHHHHHHhccccCCceeeeecC
Q psy15864        102 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL------HWRSAAILNLLFPILALCALYFIPESPHWLISQG  175 (553)
Q Consensus       102 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l------gWr~~f~i~~i~~li~~i~~~~lpEsp~~l~~~~  175 (553)
                      .-++|+-...+++++.++.+...++...|..+|..++..+      +...+=.+......+++++.+++|..+|-+.-+.
T Consensus       114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~  193 (433)
T KOG3810|consen  114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHR  193 (433)
T ss_pred             hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhc
Confidence            3447888888999999999999998888888888877765      4444444544444555666677776553221111


Q ss_pred             ChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHH
Q psy15864        176 RMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTL  255 (553)
Q Consensus       176 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (553)
                      ..++  .........+.    +.......+..   -           ..+..-+......+.++...++++...++++-.
T Consensus       194 ~~~~--~~v~~~e~~~~----~~~~~~~l~~~---~-----------~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV  253 (433)
T KOG3810|consen  194 LEDK--ISVGDLEEMNP----QASYMSYLRGA---F-----------VLLWRDLQECYSNPRLLKWSLWWALASCGYYQV  253 (433)
T ss_pred             cccc--ceeccchhcCc----cchhhHHHHHH---H-----------HHHHHHHHHHhcCchhhhhHHHHHHhhchhHHH
Confidence            1110  00000000000    00000000000   0           001111122233444556666777778888888


Q ss_pred             HhhHHHHHHhhCCCCChH---HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCC
Q psy15864        256 QTYAVGIFESIHAPLDPY---FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSP  332 (553)
Q Consensus       256 ~~~~~~~~~~~g~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  332 (553)
                      ..|...+...........   ..-.+..+.++++.++.|++--.+.|..-++++..-...+.+++...       ..++.
T Consensus       254 ~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-------~t~~I  326 (433)
T KOG3810|consen  254 TNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-------QTQHI  326 (433)
T ss_pred             HHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-------cccce
Confidence            888877766554221111   22334556677788888988777776643333322222222222211       16678


Q ss_pred             hhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHH
Q psy15864        333 LVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVN  386 (553)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~  386 (553)
                      |+.++...++...+.+...... .-+++....+.-|...|+..++.-+...+..
T Consensus       327 w~~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT  379 (433)
T KOG3810|consen  327 WVCYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTFVALILQSILT  379 (433)
T ss_pred             ehhhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHHHHHHHHHhhe
Confidence            8888887777776655543333 3344445556668888887776665555544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.81  E-value=0.00019  Score=61.74  Aligned_cols=108  Identities=9%  Similarity=-0.001  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhcc
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRL  352 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      .....+......+++++++.+.+++|.|+.++++.+...+-.+...          ..+.+.++....+.|++.+..|.+
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~----------~~~~~~l~~~s~l~G~~~a~lW~a  109 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF----------YPNSYTLYPASALLGFGAALLWTA  109 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHhhhhHHhhHh
Confidence            4556667777888889999999999999999988877765544433          234567788888899988888877


Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHH
Q psy15864        353 LPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYP  391 (553)
Q Consensus       353 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~  391 (553)
                      .. .|+.+...++.|++-.++...+...+.+++..+.-.
T Consensus       110 qg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  110 QG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             hh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            65 899999999999998888887777766666654433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.79  E-value=4.5e-05  Score=76.25  Aligned_cols=170  Identities=8%  Similarity=-0.058  Sum_probs=86.0

Q ss_pred             HHHHHHHhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHH--HHHH
Q psy15864        241 TSLFFIGQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAA--CFIV  316 (553)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i--~~~~  316 (553)
                      .....+.++..+.....|.+.++++ .|++. +.....++..+..++..++.|.++||+|.|+-++....+..+  +.+.
T Consensus        12 ~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff   91 (412)
T PF01306_consen   12 LSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFF   91 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            3334444444455666667777765 67764 345777777888999999999999999977765544332221  1111


Q ss_pred             H-HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccc---hhhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        317 V-AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNN---IRATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       317 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      + .+.+..     ..+.   +++.++.+...+..+.+..  =+.|.+-.+   ..+.-.|=.-..+.+|.+++..+.|.+
T Consensus        92 ~~v~~pll-----~~n~---~lg~iig~i~l~~~f~~~~--~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L  161 (412)
T PF01306_consen   92 IYVFGPLL-----QSNF---WLGAIIGGIYLGLVFNAGV--PLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGIL  161 (412)
T ss_dssp             HHTHHHHH-----HTT----HHHHHHTTTTTTTTTTTHH--HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-----HHHH---HHHHHHHHHHHHHHHcccc--hHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhhee
Confidence            1 111110     1121   2222222333333333321  112433221   223344566677888888888888888


Q ss_pred             HhhccchhhHHHHHHHHHHHHhhheEEcc
Q psy15864        393 LDTFHLWGTLYFYAAISVVGTLYMYFVMP  421 (553)
Q Consensus       393 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~p  421 (553)
                      .+. +....+++..+..++..++.++..|
T Consensus       162 ~~i-~p~~~fwi~s~~~~il~lll~~~~~  189 (412)
T PF01306_consen  162 FNI-NPNIIFWIASAAAIILLLLLLLLKP  189 (412)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred             eee-CccHHHHHHHHHHHHHHHHHHHcCC
Confidence            763 3344555444444444444434333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2563|consensus

Probab=97.76  E-value=0.00016  Score=71.51  Aligned_cols=120  Identities=13%  Similarity=-0.027  Sum_probs=81.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCCh--hHHHHHHHHHHHHhh
Q psy15864        271 DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPL--VPTVFLVLAAFLTHI  348 (553)
Q Consensus       271 ~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  348 (553)
                      ...|...++.+..++-.+.+.|+.|++|-|..++++.++.+++..+=.+......   .+..+  +...+..+.+.+. .
T Consensus        80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v---~~~f~~~l~~~Gq~iaa~Aq-~  155 (480)
T KOG2563|consen   80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFV---PPLFRRPLTHTGQSIAAAAQ-P  155 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccc---cccchhhhhHHhHHHHHHhh-h
Confidence            3457788888999999999999999999999999999999988877655321000   12223  3334444444433 2


Q ss_pred             hhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q psy15864        349 CIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD  394 (553)
Q Consensus       349 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~  394 (553)
                      ....+|.-...-.+|++.|+++..+......+|..++..+-+.+..
T Consensus       156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence            2233432344456899999999988888777887777665555553

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.74  E-value=0.00056  Score=70.92  Aligned_cols=143  Identities=13%  Similarity=0.082  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHH-HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccc
Q psy15864        275 ATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAA-CFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLL  353 (553)
Q Consensus       275 ~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      ...+..+...+..++.|-++|+-++|+.++..+.+.++ +.+++.+..       ....+...+..++...+++.+. ..
T Consensus        75 ~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~-------~~~~~~~~~l~iia~v~~~~~~-vf  146 (477)
T PF11700_consen   75 ANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS-------PGQWWLALVLFIIANVGYEASN-VF  146 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHHHHHHHH-HH
Confidence            34455566677778889999999988776655544443 333333321       2233333444444444444443 33


Q ss_pred             cceeeccccccchh--------------------------hhhhhHHHHHHHHHHHHHHHHhHHHHhhcc--------ch
Q psy15864        354 PWMLIGEVFPNNIR--------------------------ATASGASGSSSYIFAFAVNKLYYPMLDTFH--------LW  399 (553)
Q Consensus       354 ~~~~~~e~~p~~~R--------------------------g~~~~~~~~~~~~~~~i~~~~~~~~~~~~g--------~~  399 (553)
                      ..+|+.|+.+++.+                          +...+....++++|+++.-.+.-.++...+        ..
T Consensus       147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            35888999988888                          899999999999998887666554442222        23


Q ss_pred             hhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        400 GTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      ..+.+.++..++..+..++++|+.++
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            34555556666666677778888754

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.00039  Score=70.48  Aligned_cols=168  Identities=14%  Similarity=0.090  Sum_probs=100.2

Q ss_pred             hHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcc----cCCcc-eeecchhHHHHHHHHHHHHHHhh
Q psy15864        252 MTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHY----TGKRP-LALISTGGSAACFIVVAVYAQFH  324 (553)
Q Consensus       252 ~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~~~  324 (553)
                      ......|+..++.+ .|.+.. .....++.=+.-++.-++.|.++||    +||++ .++++.+..++.+.++...+.+ 
T Consensus        28 ~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~-  106 (467)
T COG2211          28 FGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDF-  106 (467)
T ss_pred             HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCc-
Confidence            34444555555543 454422 2244444456677888899999997    56644 4556656666666555542210 


Q ss_pred             cccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccc-cchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-------
Q psy15864        325 LSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFP-NNIRATASGASGSSSYIFAFAVNKLYYPMLDTF-------  396 (553)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------  396 (553)
                        .........++..++++.++.....|-. ++.+|+.+ ++.|....+.-..+..+++++...+.++++...       
T Consensus       107 --~~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~  183 (467)
T COG2211         107 --SMTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKAL  183 (467)
T ss_pred             --ccCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence              0012334445555566666655544443 77778764 578999888888888888888887777776433       


Q ss_pred             cchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        397 HLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       397 g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      |+.....+++++.++..+++++-.+|.
T Consensus       184 g~~~~~~~~~vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         184 GYQGTALVLGVIGVILLLFCFFNVKER  210 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            444455555555555666666555553

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.67  E-value=0.00028  Score=71.54  Aligned_cols=129  Identities=13%  Similarity=-0.039  Sum_probs=71.3

Q ss_pred             HHhhhhhHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCC-cceeecchhHHHHHHHHHHHHHHh
Q psy15864        246 IGQFGGMTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGK-RPLALISTGGSAACFIVVAVYAQF  323 (553)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~~~~  323 (553)
                      +.++..+.....|.+.+++..|++. +.....++..+..+++.++.|+++||.++ ++.+.+..++.++..++...    
T Consensus        12 f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~----   87 (400)
T PF03825_consen   12 FLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF----   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH----
Confidence            3334445555667788888888764 44577778889999999999999999875 45554444444443333322    


Q ss_pred             hcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHH
Q psy15864        324 HLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVN  386 (553)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~  386 (553)
                           ..+.+.+++..+++.++.. ...++.-++..+...  .++.-.|-.-..+.+|-+++.
T Consensus        88 -----~~~f~~~~~~~~l~~~~~~-p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~  142 (400)
T PF03825_consen   88 -----SSSFWWLFVIMLLFSFFFS-PTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAA  142 (400)
T ss_pred             -----hccHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHH
Confidence                 3344555544444444332 222333233333332  223344444445555544443

>KOG3098|consensus

Probab=97.57  E-value=0.0018  Score=65.65  Aligned_cols=115  Identities=16%  Similarity=0.140  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcc---cCCcceeecchhHHHHHHHHHHHHHHhhcc-cC--------CCCChhHHHHHHH
Q psy15864        274 FATLLLGVAELGGALLCVVLIHY---TGKRPLALISTGGSAACFIVVAVYAQFHLS-YG--------WDSPLVPTVFLVL  341 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr---~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~  341 (553)
                      ...+..+++.+++.+..+.+.+|   +||++++.++.++..+++++.........+ .+        .+.....++..++
T Consensus       283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l  362 (461)
T KOG3098|consen  283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL  362 (461)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence            44556778888888888888865   688888888888777777666543221110 00        1122244455555


Q ss_pred             HHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhH
Q psy15864        342 AAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYY  390 (553)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~  390 (553)
                      .|++- .++....+.+++..+ ++.|..+.++.-+-..+.+.++-+..+
T Consensus       363 ~G~~D-~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  363 LGFGD-ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HhhHH-HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            55554 334444567788888 566788887776666666655543333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.50  E-value=0.00074  Score=66.64  Aligned_cols=126  Identities=9%  Similarity=0.002  Sum_probs=78.6

Q ss_pred             HHHHHHhhhhcccC-----Ccceeec-chhHHHHHHHHHHHHHHhhcc---cCCCCChhH----HHHHHHHHHHHhhhhc
Q psy15864        285 GGALLCVVLIHYTG-----KRPLALI-STGGSAACFIVVAVYAQFHLS---YGWDSPLVP----TVFLVLAAFLTHICIR  351 (553)
Q Consensus       285 ~g~~~~g~l~dr~G-----rr~~l~~-~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~  351 (553)
                      +..+..|+.+|+.+     ||...++ +.+.+..+..+..........   ....+.+.-    .+...+.|.+.+....
T Consensus        29 p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T  108 (403)
T PF03209_consen   29 PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGT  108 (403)
T ss_pred             HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHH
Confidence            45678899999988     7766554 444444444444333222211   111122222    2223334444433333


Q ss_pred             cccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHH
Q psy15864        352 LLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVV  411 (553)
Q Consensus       352 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~  411 (553)
                      +. .+.++|..|++.|+.+.++...+.-+|.+++..+.+.+++.+...+..-++..+.++
T Consensus       109 ~~-lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i  167 (403)
T PF03209_consen  109 SF-LALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI  167 (403)
T ss_pred             HH-HHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence            33 488899999999999999999999999999999999998877655544444443333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.37  E-value=0.011  Score=60.13  Aligned_cols=128  Identities=17%  Similarity=0.017  Sum_probs=74.4

Q ss_pred             hHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhccc-CCCCChhH
Q psy15864        258 YAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSY-GWDSPLVP  335 (553)
Q Consensus       258 ~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~  335 (553)
                      .+..|+...|++... +..-.+..+.++.|+++..++.+|+|-.+.-+++.....++..+.....+....+ +..+...+
T Consensus       280 lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l  359 (432)
T PF06963_consen  280 LMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLL  359 (432)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHH
Confidence            344455555765433 3445566788899999999999999988777777665554444433322211100 01112222


Q ss_pred             HHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHH
Q psy15864        336 TVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVN  386 (553)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~  386 (553)
                      +.+..+.-++. .++-....-++.|..|++.||+..|+-+...++...+.-
T Consensus       360 ~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~  409 (432)
T PF06963_consen  360 LGGIALSRIGL-WSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSF  409 (432)
T ss_pred             HHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence            22222222222 222222235678999999999999998888877766553

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.34  E-value=0.00071  Score=69.60  Aligned_cols=133  Identities=20%  Similarity=0.188  Sum_probs=85.2

Q ss_pred             HHHHHHhhhhcccC-----CcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeec
Q psy15864        285 GGALLCVVLIHYTG-----KRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIG  359 (553)
Q Consensus       285 ~g~~~~g~l~dr~G-----rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (553)
                      ..-++.|.++|-+.     ||+-++++.++.+++++.++.....     ..+.....+..++..++....-.. .-+.+.
T Consensus        39 ~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~l~la~~g~a~~DV~-aDa~vv  112 (433)
T PF03092_consen   39 SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-----ESSAAIAVVLLFLASFGYAFADVA-ADALVV  112 (433)
T ss_pred             HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-----cchhhhHHHHHHHHHHHHHHHHHh-hhHHHH
Confidence            34577899999862     4555666666665555555543210     123333334444444444333322 235666


Q ss_pred             ccc---ccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccCC
Q psy15864        360 EVF---PNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETE  424 (553)
Q Consensus       360 e~~---p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  424 (553)
                      |..   |.. ||...+....+..+|++++..+.|++.+..+....+.+.+++..+..+..+++.+|.+
T Consensus       113 E~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~  179 (433)
T PF03092_consen  113 ELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERK  179 (433)
T ss_pred             HHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcc
Confidence            765   333 7888888888899999999999999998888777777777777777666667777743

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.26  E-value=0.006  Score=56.38  Aligned_cols=51  Identities=18%  Similarity=0.213  Sum_probs=37.8

Q ss_pred             ccccchhchhhhhHHHHHHHHHh--hcc-cc------chHHHHHHHHHHHHHHHHHhccc
Q psy15864        114 HLRGMLSATASMTTIFGTVSQLF--LGS-FL------HWRSAAILNLLFPILALCALYFI  164 (553)
Q Consensus       114 ~~Rg~~~~~~~~~~~lG~~l~~~--l~~-~l------gWr~~f~i~~i~~li~~i~~~~l  164 (553)
                      ++|+..+.+-..++++|.++..+  +.. -.      .|++++.+.+++.++.+++..++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57888888889999999887543  322 11      79999999998887776665544

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.25  E-value=0.0052  Score=59.40  Aligned_cols=115  Identities=16%  Similarity=-0.000  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhc
Q psy15864        272 PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIR  351 (553)
Q Consensus       272 ~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (553)
                      ..+......++..++.++.|.++||+|||+.+..+.....++.++..+..       ....+.+++.++..+++.+... 
T Consensus        41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~-  112 (338)
T COG0477          41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP-------NVGLALLLILRLLQGLGGGGLL-  112 (338)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc-------cchHHHHHHHHHHHHhhhHHHH-
Confidence            34666677777888889999999999999666666554334433333310       1134555556665566554333 


Q ss_pred             cccceeecccccc-chhhhhhhHHHH-HHHHHHHHHHHHhHHHHh
Q psy15864        352 LLPWMLIGEVFPN-NIRATASGASGS-SSYIFAFAVNKLYYPMLD  394 (553)
Q Consensus       352 ~~~~~~~~e~~p~-~~Rg~~~~~~~~-~~~~~~~i~~~~~~~~~~  394 (553)
                      +....++.|.+|. ..|+...+.... ...++..+++.+.+.+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477         113 PVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445888999987 567887777766 455666666655554443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.22  E-value=0.00031  Score=59.31  Aligned_cols=76  Identities=29%  Similarity=0.451  Sum_probs=59.6

Q ss_pred             ccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhcc-
Q psy15864         91 TFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYF-  163 (553)
Q Consensus        91 r~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~-  163 (553)
                      +++.|++..  .+...+++.|.+|+++|++..++...+..+|..+++.+++.+    +|++.|++.+++.++..+..++ 
T Consensus        58 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence            455665543  345668899999999999999999999999999988887765    8999999988887777555444 


Q ss_pred             ccC
Q psy15864        164 IPE  166 (553)
Q Consensus       164 lpE  166 (553)
                      .||
T Consensus       138 ~~~  140 (141)
T TIGR00880       138 LPE  140 (141)
T ss_pred             CCC
Confidence            555

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.18  E-value=0.0008  Score=50.30  Aligned_cols=65  Identities=14%  Similarity=0.160  Sum_probs=50.2

Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecch
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALIST  307 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~  307 (553)
                      ...+..+++...+..|.+.++++.|++... .....+..+..+++.+++|+++||+++++.++...
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~   72 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS   72 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence            345556666777788888888888886543 46666777889999999999999999988765543

>KOG0637|consensus

Probab=97.10  E-value=0.00091  Score=66.40  Aligned_cols=42  Identities=19%  Similarity=0.257  Sum_probs=36.0

Q ss_pred             hhhhhccCcccccc-hhchhhhhHHHHHHHHHhhccccchHHH
Q psy15864        105 TYVAEITQPHLRGM-LSATASMTTIFGTVSQLFLGSFLHWRSA  146 (553)
Q Consensus       105 ~~i~e~~p~~~Rg~-~~~~~~~~~~lG~~l~~~l~~~lgWr~~  146 (553)
                      ++++|...++++.+ +.+++..+.++|..+|..++.+.+|+-.
T Consensus       165 a~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~~  207 (498)
T KOG0637|consen  165 ALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYKI  207 (498)
T ss_pred             HHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceEE
Confidence            88999997776666 9999999999999999999988877643

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.93  E-value=0.0036  Score=62.44  Aligned_cols=61  Identities=20%  Similarity=0.146  Sum_probs=44.4

Q ss_pred             CCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHH
Q psy15864        330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYP  391 (553)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~  391 (553)
                      ++.|.+++..+.-|+..|..+... +..+.|-.|++.|..++|+....-.+|..+++.+.-.
T Consensus       333 psi~ivf~lif~eGLlGGa~YVNt-F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~  393 (402)
T PF02487_consen  333 PSIWIVFVLIFYEGLLGGASYVNT-FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP  393 (402)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            456677777777777777776555 4666777899999999999887777777666654433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.72  E-value=0.00023  Score=74.82  Aligned_cols=147  Identities=10%  Similarity=-0.154  Sum_probs=1.3

Q ss_pred             HHHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHh
Q psy15864        245 FIGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQF  323 (553)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~  323 (553)
                      .+.+......+...++++-.+++++.. ..++.+..-++.++..++..++..|..|-+.+-++.++++++.+++++--..
T Consensus        12 ~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~   91 (539)
T PF03137_consen   12 GLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFL   91 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhh
Confidence            333344444455555666666777644 4477777889999999999999999888788888889999998887753221


Q ss_pred             hccc-------------------------------------CCC----CChhHHHHHHHHHHHHhhhhccccceeecccc
Q psy15864        324 HLSY-------------------------------------GWD----SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVF  362 (553)
Q Consensus       324 ~~~~-------------------------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  362 (553)
                      ...+                                     ...    ..++++++.++.|++. ....++..+|+=|.+
T Consensus        92 ~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~-~pl~tLG~tYiDDnv  170 (539)
T PF03137_consen   92 SGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGA-TPLYTLGITYIDDNV  170 (539)
T ss_dssp             ------------------------------------------------------------SSS-----------------
T ss_pred             cCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccc-cCCccceeeeecccc
Confidence            1000                                     000    1122333444444433 223355568999999


Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        363 PNNIRATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       363 p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      +++.-+...|+.+++..+|-++|-.+.+.+
T Consensus       171 ~~~~splYiGi~~~~~~lGPa~Gf~lg~~~  200 (539)
T PF03137_consen  171 SKKNSPLYIGILYAMSILGPALGFLLGSFC  200 (539)
T ss_dssp             ------------------------------
T ss_pred             ccccCccchhhhhHHhhccHHHHHHHHHHH
Confidence            999888888888887777766665555543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG4332|consensus

Probab=96.60  E-value=0.005  Score=56.72  Aligned_cols=162  Identities=12%  Similarity=-0.032  Sum_probs=88.5

Q ss_pred             HHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHH
Q psy15864        262 IFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLV  340 (553)
Q Consensus       262 ~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (553)
                      +++.+|+... .....+......++...+.|-++|+.|||+..+..++...++++.--          ++...++++++.
T Consensus        63 LYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKh----------SpqYkVLmVGR~  132 (454)
T KOG4332|consen   63 LYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH----------SPQYKVLMVGRV  132 (454)
T ss_pred             eehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhc----------CCceEEEeehhh
Confidence            3444555432 22222222233444556667899999999987777666655554321          556677888999


Q ss_pred             HHHHHHhhhhccccceeecccc-----ccchhhhhhhHHH-HHHHHHHHHHHHHhHHHHhhcc--chhhHHHHHHHHHHH
Q psy15864        341 LAAFLTHICIRLLPWMLIGEVF-----PNNIRATASGASG-SSSYIFAFAVNKLYYPMLDTFH--LWGTLYFYAAISVVG  412 (553)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~e~~-----p~~~Rg~~~~~~~-~~~~~~~~i~~~~~~~~~~~~g--~~~~~~~~~~~~~~~  412 (553)
                      +.|+..+..+...-.=+++|..     |.+.-....+=.. +...+.+++++.....+.+.++  .-.+|-..+.+..+.
T Consensus       133 LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaig  212 (454)
T KOG4332|consen  133 LGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIG  212 (454)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence            9888877766555433556653     3333222222222 3344555666655556666554  333444444444444


Q ss_pred             HhhheEEcccCCCCChHHHHH
Q psy15864        413 TLYMYFVMPETEGRTLRDIEE  433 (553)
Q Consensus       413 ~~~~~~~~pet~~~~~~~~~~  433 (553)
                      ..+++--.-|..+++.+..+-
T Consensus       213 mAvil~~W~ENygdps~~kdl  233 (454)
T KOG4332|consen  213 MAVILSSWSENYGDPSENKDL  233 (454)
T ss_pred             HHHHHhhhhhccCChhhhHHH
Confidence            444444456666665554443

>KOG3626|consensus

Probab=96.58  E-value=0.022  Score=60.79  Aligned_cols=188  Identities=11%  Similarity=-0.065  Sum_probs=108.2

Q ss_pred             HHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHH
Q psy15864        239 IVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVV  317 (553)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  317 (553)
                      ++..+..+.+......+......+-...+++... .++...+-++..+..++..+..-|.-|-+.+-+++++++++.++.
T Consensus       100 ~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~  179 (735)
T KOG3626|consen  100 VLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF  179 (735)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence            3333334444333344444444444556665433 355556668888888888899999999999999999999999988


Q ss_pred             HHHHHhhc-------------ccC----------------------C----CCC---h-hHHHHHHHHHHHHhhhhcccc
Q psy15864        318 AVYAQFHL-------------SYG----------------------W----DSP---L-VPTVFLVLAAFLTHICIRLLP  354 (553)
Q Consensus       318 ~~~~~~~~-------------~~~----------------------~----~~~---~-~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      ++.-.+..             ..+                      .    .+.   + +++++.++.|++. ....++.
T Consensus       180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~-Tpi~tlG  258 (735)
T KOG3626|consen  180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGA-TPIFTLG  258 (735)
T ss_pred             hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCC-CCCccCC
Confidence            76422110             000                      0    111   1 1222233333332 2223445


Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh------------------ccchhhHHHHHHHHHHHHhhh
Q psy15864        355 WMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT------------------FHLWGTLYFYAAISVVGTLYM  416 (553)
Q Consensus       355 ~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~------------------~g~~~~~~~~~~~~~~~~~~~  416 (553)
                      .+|+=|....+.-....|+.+++..+|-+++-.+++.+...                  .|-||.-+++++...+...+.
T Consensus       259 isYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p  338 (735)
T KOG3626|consen  259 ISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP  338 (735)
T ss_pred             CccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            58888888888777888888877777766666555554321                  233444444444444444455


Q ss_pred             eEEcccCCCCC
Q psy15864        417 YFVMPETEGRT  427 (553)
Q Consensus       417 ~~~~pet~~~~  427 (553)
                      ++++|.+..+.
T Consensus       339 ~f~fPk~lp~~  349 (735)
T KOG3626|consen  339 LFFFPKELPKS  349 (735)
T ss_pred             HHhCcccCccc
Confidence            56677664443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.49  E-value=0.04  Score=56.72  Aligned_cols=109  Identities=12%  Similarity=0.025  Sum_probs=72.7

Q ss_pred             HHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCC------------C----------CChhHHHHHHHH
Q psy15864        285 GGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGW------------D----------SPLVPTVFLVLA  342 (553)
Q Consensus       285 ~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~------------~----------~~~~~~~~~~~~  342 (553)
                      +..++.+++++|++|++++.+....+++..+++++........-.            +          ..|...++....
T Consensus        59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~  138 (472)
T TIGR00769        59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMA  138 (472)
T ss_pred             HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHH
Confidence            337788999999999998887777776666666655321110000            0          122222222233


Q ss_pred             HHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864        343 AFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML  393 (553)
Q Consensus       343 ~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~  393 (553)
                      ........+.+.|.+++|++..+.-.+..++....++++.++++.+..++.
T Consensus       139 elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       139 ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333366899999999999999999999999999999998887765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.29  E-value=0.036  Score=55.52  Aligned_cols=131  Identities=13%  Similarity=0.112  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccc
Q psy15864        282 AELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEV  361 (553)
Q Consensus       282 ~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  361 (553)
                      ..++..++...+.|.+|-|++++++.+..++.++++.+         ..+.+.+.+.-++.|.+.+.-.  .-++|+--.
T Consensus        53 Syl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~---------~~sv~~mq~~q~~yg~~~a~ev--ay~sYiys~  121 (412)
T PF01770_consen   53 SYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF---------GTSVLAMQLMQFFYGLATAAEV--AYYSYIYSV  121 (412)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---------HCcHHHHHHHHHHHHHHHHHHH--HHHHHheee
Confidence            34556677788999999999999998888888877766         5666777777777776554432  223555566


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc-chhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        362 FPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH-LWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       362 ~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      .|++.--.+.+.......+|.+++..++-.++...+ .+.....+......++++..+++|..
T Consensus       122 v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~  184 (412)
T PF01770_consen  122 VDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP  184 (412)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            677666677777766666666666655554443222 22233333334344444444566654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG4686|consensus

Probab=96.07  E-value=0.00032  Score=64.90  Aligned_cols=116  Identities=11%  Similarity=-0.141  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcc-cCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhcc
Q psy15864        274 FATLLLGVAELGGALLCVVLIHY-TGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRL  352 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      +..++++...++-++++|++.|| +|-|...++.+++..++.++++....      .+..|.+..+++++|++. -....
T Consensus        83 LlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi------~~aFw~M~~GRF~FGIGg-ESlAV  155 (459)
T KOG4686|consen   83 LLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI------SHAFWTMLAGRFLFGIGG-ESLAV  155 (459)
T ss_pred             eeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH------HHHHHHHHhhheeeccCc-hhhhh
Confidence            45566777788889999999997 67777666666666777777665333      456788899999999865 34445


Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc
Q psy15864        353 LPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF  396 (553)
Q Consensus       353 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~  396 (553)
                      ....|+.-.+.-+.-+.++|+...+.++|+.+--.+.+++.+..
T Consensus       156 aQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  156 AQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             hhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence            55688888888888899999999999998877666666666543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.99  E-value=0.5  Score=48.81  Aligned_cols=37  Identities=8%  Similarity=-0.033  Sum_probs=33.0

Q ss_pred             hhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc
Q psy15864        105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL  141 (553)
Q Consensus       105 ~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l  141 (553)
                      +++.|.++.++-.|..+++.++.++|.++++.+..++
T Consensus       152 ~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~  188 (472)
T TIGR00769       152 GFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF  188 (472)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999998775553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.91  E-value=0.012  Score=59.47  Aligned_cols=116  Identities=9%  Similarity=-0.154  Sum_probs=74.7

Q ss_pred             eeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccc---hhhhhhhHHHHHH
Q psy15864        302 LALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNN---IRATASGASGSSS  378 (553)
Q Consensus       302 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~Rg~~~~~~~~~~  378 (553)
                      +++++.++.++|.+++.+...............+++++.+.+++.|+.=..+. ++.+|.++++   .|..+....+...
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~-~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNIS-PFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHH-HHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHH-HHHHHHhcccchhhhhhhHHHHHHHH
Confidence            44566777777777755543211111122345677777777777766655554 8889998765   4566677888889


Q ss_pred             HHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheE
Q psy15864        379 YIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYF  418 (553)
Q Consensus       379 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  418 (553)
                      ++|+.++..+.+++.+..+|+..|.+.++..+++.++.+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999988888877777766666555554433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3098|consensus

Probab=95.88  E-value=0.044  Score=55.87  Aligned_cols=107  Identities=7%  Similarity=-0.041  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhcc
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRL  352 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      +....+......+.+++++.+.|++|.|+.+.++.....+..+.+..          .+.+..++...+.|++.+..|..
T Consensus        53 y~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~----------~N~y~~yfssallG~Gaallw~G  122 (461)
T KOG3098|consen   53 YYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF----------PNSYYLYFSSALLGFGAALLWTG  122 (461)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh----------cchHHHHHHHHHhhhhHHheecc
Confidence            45567788888999999999999999999999888777666655543          46788889999999998877776


Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhH
Q psy15864        353 LPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYY  390 (553)
Q Consensus       353 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~  390 (553)
                      -. .|++|..+++.+.+-.++..++.....++|+.+..
T Consensus       123 qG-~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~  159 (461)
T KOG3098|consen  123 QG-GYLTSNSTRETIERNISIFWAIGQSSLIIGGIILF  159 (461)
T ss_pred             cc-eehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence            65 99999999999999999888888777777655443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=95.64  E-value=0.097  Score=52.05  Aligned_cols=103  Identities=14%  Similarity=0.063  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHhhhhcccCCcceeecchhHHH-HHHHHHHHHHHhhcccCCCCChhHH-HHHHHHHHHHhhhhccccc
Q psy15864        278 LLGVAELGGALLCVVLIHYTGKRPLALISTGGSA-ACFIVVAVYAQFHLSYGWDSPLVPT-VFLVLAAFLTHICIRLLPW  355 (553)
Q Consensus       278 ~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  355 (553)
                      +.++...+-+++-|-++|+.|+|+..+..+.... ++.+++.+.+       ..+.+... ++..+..+++..+ .....
T Consensus        66 ia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~-------~~s~~~~~l~~~il~~i~~~~s-~Vfyd  137 (438)
T COG2270          66 IAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIP-------PGSYLLLLLLFLILASIGFEFS-NVFYD  137 (438)
T ss_pred             HHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHHhcchh-heehh
Confidence            4445555566777889999998776655444333 3333333321       21334333 3333444433333 23334


Q ss_pred             eeeccccccchhhhhhhHHHHHHHHHHHHHHHH
Q psy15864        356 MLIGEVFPNNIRATASGASGSSSYIFAFAVNKL  388 (553)
Q Consensus       356 ~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~  388 (553)
                      +++.++.+++.-++..++....+++++.+.-.+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~  170 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIF  170 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHH
Confidence            778888888777888888888888877665444

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.60  E-value=0.026  Score=42.69  Aligned_cols=69  Identities=16%  Similarity=-0.022  Sum_probs=55.4

Q ss_pred             hhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHH
Q psy15864        251 GMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAV  319 (553)
Q Consensus       251 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  319 (553)
                      +-+.+...+|...++.+++.+ ..+..+...+|.++|++.+.++.++..++..+..+.+...+..+.+++
T Consensus         7 gRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen    7 GRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             HHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            344555678888888887754 458888999999999999999999877788888888888877777776

Note that many members are hypothetical proteins.

>PRK03612 spermidine synthase; Provisional

Probab=95.54  E-value=0.063  Score=56.45  Aligned_cols=49  Identities=12%  Similarity=0.120  Sum_probs=33.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhHHHHh-hccchhhHHHHHHHHHHHHhhh
Q psy15864        368 ATASGASGSSSYIFAFAVNKLYYPMLD-TFHLWGTLYFYAAISVVGTLYM  416 (553)
Q Consensus       368 g~~~~~~~~~~~~~~~i~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~  416 (553)
                      |...|-.++...+|+++++++.+.++- ..|.....++++++.++++++.
T Consensus       144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            456777788888999999888887654 5666656666666555555433

>KOG0637|consensus

Probab=95.46  E-value=0.01  Score=59.22  Aligned_cols=151  Identities=14%  Similarity=0.008  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcc----cCCcceeecc-hhHH
Q psy15864        237 YAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHY----TGKRPLALIS-TGGS  310 (553)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr----~Grr~~l~~~-~~~~  310 (553)
                      ++....+.+..++ ++..-..|++.+++..|.+... +......-+.+++..++.|..+||    +|||+..+.. ....
T Consensus        34 li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i  112 (498)
T KOG0637|consen   34 LISVASIAAGVQF-GWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLI  112 (498)
T ss_pred             HHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHH
Confidence            3333334344444 3455556777777888876433 233344456677788889999997    6887776554 4444


Q ss_pred             HHHHHHHHHHHHhhc---ccCCC-----CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhh-hhhHHHHHHHHH
Q psy15864        311 AACFIVVAVYAQFHL---SYGWD-----SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRAT-ASGASGSSSYIF  381 (553)
Q Consensus       311 ~i~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~-~~~~~~~~~~~~  381 (553)
                      .++.+++.+......   .+...     .....+++..+.-++.....+|.= ++++|++....+.+ +.+...++..+|
T Consensus       113 ~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  113 AVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHHhc
Confidence            455555444332211   11111     111233334444445545556664 88899987776666 888887777777


Q ss_pred             HHHHHHHh
Q psy15864        382 AFAVNKLY  389 (553)
Q Consensus       382 ~~i~~~~~  389 (553)
                      +.++-.+.
T Consensus       192 nvLGY~~g  199 (498)
T KOG0637|consen  192 NVLGYALG  199 (498)
T ss_pred             ceeeeecc
Confidence            77664433

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=95.01  E-value=1.2  Score=45.35  Aligned_cols=66  Identities=14%  Similarity=0.167  Sum_probs=46.4

Q ss_pred             hhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-c-------------hHHHHHHHHHHHHHHHHHhcc----ccC
Q psy15864        105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-H-------------WRSAAILNLLFPILALCALYF----IPE  166 (553)
Q Consensus       105 ~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-g-------------Wr~~f~i~~i~~li~~i~~~~----lpE  166 (553)
                      ....|.+..++-.|..++++++.+++.++++.+..++ .             -+..+.+.++.+++++++.++    +++
T Consensus       171 ~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~  250 (509)
T COG3202         171 QFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLT  250 (509)
T ss_pred             HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            4567888899999999999999999999988877665 2             344455555555555544443    345


Q ss_pred             Ccee
Q psy15864        167 SPHW  170 (553)
Q Consensus       167 sp~~  170 (553)
                      .|++
T Consensus       251 ~~~f  254 (509)
T COG3202         251 DPLF  254 (509)
T ss_pred             Ccch
Confidence            5544

>TIGR01272 gluP glucose/galactose transporter

Probab=94.79  E-value=0.058  Score=52.87  Aligned_cols=63  Identities=8%  Similarity=-0.179  Sum_probs=51.4

Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD  394 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~  394 (553)
                      +.+.+++..++.+.+.+..-... ..|++++.|++.+++.+++.+.+..+|.+++|.+.+.++.
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~-n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~   71 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAA-NPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLIL   71 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhH-HHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            44566677777777776555444 6999999999999999999999999999999999998773

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.49  E-value=0.2  Score=50.47  Aligned_cols=64  Identities=13%  Similarity=0.035  Sum_probs=50.2

Q ss_pred             chhhhhhhhhccCcc---cccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHHHhcc
Q psy15864        100 LVLVLTYVAEITQPH---LRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALCALYF  163 (553)
Q Consensus       100 ~~~~~~~i~e~~p~~---~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i~~~~  163 (553)
                      =+.+.++++|.++++   +|.....++..+.++|.+++..+..++    ||.+.|++.++..+++++..+.
T Consensus        51 K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   51 KPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            356678899999765   456677788999999999999888877    8999999988887777655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=94.15  E-value=1.9  Score=44.95  Aligned_cols=37  Identities=16%  Similarity=0.137  Sum_probs=31.5

Q ss_pred             hhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc
Q psy15864        105 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL  141 (553)
Q Consensus       105 ~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l  141 (553)
                      .+..|.++.++-.+..+++.++.++|.++++.+...+
T Consensus       167 ~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~  203 (491)
T PF03219_consen  167 GFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF  203 (491)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6678999999999999999999999999887665443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.07  E-value=0.68  Score=47.62  Aligned_cols=55  Identities=11%  Similarity=-0.076  Sum_probs=36.9

Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHH
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVN  386 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~  386 (553)
                      +.+..++..+++++..|.... +...+..+..+++.|..+..++..+..+|-.+|+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s-~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs  425 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGS-LSMCLAPRQVDPHEREVAGALMVIFLLVGLALGA  425 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566677777777655544 4458888888888888777666666555555544

>KOG3574|consensus

Probab=94.01  E-value=0.78  Score=45.10  Aligned_cols=44  Identities=9%  Similarity=-0.068  Sum_probs=36.7

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        355 WMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       355 ~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                      .++.+.+.+|..-|+.+.+.++..++|+.+-..+...+.+..++
T Consensus       391 maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv  434 (510)
T KOG3574|consen  391 MAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV  434 (510)
T ss_pred             HHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence            37888999999999999999999999988877777777665543

>KOG1237|consensus

Probab=93.44  E-value=0.74  Score=48.93  Aligned_cols=140  Identities=14%  Similarity=-0.048  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcc-cCCcceeecchhHHHHHHHHHHHHHHhhcccC-----------CC--CC---hhHH
Q psy15864        274 FATLLLGVAELGGALLCVVLIHY-TGKRPLALISTGGSAACFIVVAVYAQFHLSYG-----------WD--SP---LVPT  336 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~-----------~~--~~---~~~~  336 (553)
                      ..............+++++++|- +||-+++.++.++..++.+++.+........+           ..  +.   ..++
T Consensus        77 ~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~  156 (571)
T KOG1237|consen   77 NNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLY  156 (571)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHH
Confidence            34445555566777889999996 58888888888888888766655443321100           01  11   1222


Q ss_pred             HHHHHHHHHHhhhhccccceeeccccc---cc-hhh--hhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q psy15864        337 VFLVLAAFLTHICIRLLPWMLIGEVFP---NN-IRA--TASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISV  410 (553)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~e~~p---~~-~Rg--~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~  410 (553)
                      ..+.+..++.| +.-+....+-+|-++   +. .+.  ..+...++..+++..++-.+..+..+..+|...+.+.+++.+
T Consensus       157 ~~l~lia~G~g-g~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~  235 (571)
T KOG1237|consen  157 GALYLIALGAG-GIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNA  235 (571)
T ss_pred             HHHHHheeccC-CCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHH
Confidence            22223322332 222333478888887   22 222  344555555667777666666666667776666655555444


Q ss_pred             HHHh
Q psy15864        411 VGTL  414 (553)
Q Consensus       411 ~~~~  414 (553)
                      ++.+
T Consensus       236 lai~  239 (571)
T KOG1237|consen  236 LAIL  239 (571)
T ss_pred             HHHH
Confidence            4443

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.23  E-value=0.02  Score=56.06  Aligned_cols=110  Identities=13%  Similarity=-0.018  Sum_probs=1.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccc-CCcceeecchhHHHHHHHHHHHHHHhhc----ccCCCCChhHHHHHHHHHHHHhhh
Q psy15864        275 ATLLLGVAELGGALLCVVLIHYT-GKRPLALISTGGSAACFIVVAVYAQFHL----SYGWDSPLVPTVFLVLAAFLTHIC  349 (553)
Q Consensus       275 ~~~~~~i~~~~g~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  349 (553)
                      ..+++.++-++|..++++..-+. .+|.+.+ ..+.=.+...++.+......    ...-.+-+..++..+++++..|..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            34467788889988887643211 2343333 22221111111111100000    000123345555666777666544


Q ss_pred             hccccceeeccccccchhhhhhhHHHHHHHHHHHHHH
Q psy15864        350 IRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVN  386 (553)
Q Consensus       350 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~  386 (553)
                      . ++...+..+..+++.|..+..++.++..+|-.+|.
T Consensus       266 ~-tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs  301 (309)
T PF01733_consen  266 S-TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGS  301 (309)
T ss_dssp             --HHHH-------------------------------
T ss_pred             h-hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 44458888888888887766665555554444443

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=92.34  E-value=2.5  Score=45.83  Aligned_cols=65  Identities=15%  Similarity=0.122  Sum_probs=46.3

Q ss_pred             cccchhhhhhhhhccCcc---cccchhchhhhhHHHHHHHHHhhcccc-----------chHHHHHHHHHHHHHHHHHh
Q psy15864         97 AAPLVLVLTYVAEITQPH---LRGMLSATASMTTIFGTVSQLFLGSFL-----------HWRSAAILNLLFPILALCAL  161 (553)
Q Consensus        97 ga~~~~~~~~i~e~~p~~---~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----------gWr~~f~i~~i~~li~~i~~  161 (553)
                      |+.-+...+...|.++++   +|-.+..++..+.++|+++++++..++           +|.+.|.+.++..++++++.
T Consensus       100 GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       100 GGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             cccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence            333456668888888754   356677777888888988887665433           49999999888877775544

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.27  E-value=4.2  Score=41.79  Aligned_cols=42  Identities=12%  Similarity=-0.011  Sum_probs=33.2

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc
Q psy15864        355 WMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF  396 (553)
Q Consensus       355 ~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~  396 (553)
                      .++-+.+..|..-|+.+.+.+++.++||-+-..+.-.+++.+
T Consensus       427 ~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  427 MAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            377788899999999999999999998877665555555543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=91.93  E-value=1.1  Score=45.03  Aligned_cols=132  Identities=19%  Similarity=0.130  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhcccc
Q psy15864        275 ATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLP  354 (553)
Q Consensus       275 ~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      +.+.-.+..++.-+++.++.+|+.-+.=.++..+++++++++.++         +.+.++-+++..+.+++.|.+-... 
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~---------~~~v~~~l~Gv~las~ssg~GE~tf-  133 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAF---------SPSVWVRLLGVVLASLSSGLGEVTF-  133 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheee---------ccchhHHHHHHHHHhhhhhhhHHHH-
Confidence            444455677777888899999876443344455566667666665         5667777777777777665554333 


Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhcc--chhhHHHHHHHHHHHHhhheEEccc
Q psy15864        355 WMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFH--LWGTLYFYAAISVVGTLYMYFVMPE  422 (553)
Q Consensus       355 ~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~pe  422 (553)
                       .-.+..+++..    .+.....-..++.+++.....+.. .+  .+..+.+...++++..+..++.+|.
T Consensus       134 -L~lt~~y~~~~----l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  134 -LSLTHFYGKSS----LSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             -HHHHHhcCccc----cccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence             22344555422    222222222334444443333333 33  2334555555554454444455553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG4332|consensus

Probab=91.63  E-value=3.1  Score=38.92  Aligned_cols=97  Identities=15%  Similarity=0.108  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCc--ceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhh
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGKR--PLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICI  350 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Grr--~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (553)
                      ..+...+.+..++|+-+..++..+-..|  ..+.+.+++.++...+......  .+.+..+....+++.+++-.+.|..+
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~--vsP~kes~~~s~i~F~~~E~cvGlfw  362 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS--VSPSKESPSESLIGFCLFEACVGLFW  362 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc--cCCCcCCchHHHHHHHHHHHHHhhcc
Confidence            3555666677778877776666553322  2333444443333333332221  22222344445667777777777777


Q ss_pred             ccccceeeccccccchhhhhhh
Q psy15864        351 RLLPWMLIGEVFPNNIRATASG  372 (553)
Q Consensus       351 ~~~~~~~~~e~~p~~~Rg~~~~  372 (553)
                      ..+. -+-+...|.+.|++.+-
T Consensus       363 PSim-kmRsqyIPEearstimN  383 (454)
T KOG4332|consen  363 PSIM-KMRSQYIPEEARSTIMN  383 (454)
T ss_pred             hHHH-HHHHhhCCHHHHhhhhh
Confidence            6554 55577789898887653

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=91.48  E-value=8.3  Score=39.48  Aligned_cols=146  Identities=8%  Similarity=-0.017  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHH----HHHHHHHHhhcccCCCCChhHH---HHHHHHHHH
Q psy15864        273 YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACF----IVVAVYAQFHLSYGWDSPLVPT---VFLVLAAFL  345 (553)
Q Consensus       273 ~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  345 (553)
                      +...+.-.+..++.+...|...||..|.+....+.++.-++.    +++......... ...+.+...   +...+++..
T Consensus        41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~~~i  119 (432)
T PF06963_consen   41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSS-SSQSSWLFIALFALLILLGAI  119 (432)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcc-ccccchHHHHHHHHHHHHHHH
Confidence            345555667777777888899999999887666654333222    222222211100 000122221   112222221


Q ss_pred             Hhhhhccccce----eecccc--ccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEE
Q psy15864        346 THICIRLLPWM----LIGEVF--PNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFV  419 (553)
Q Consensus       346 ~~~~~~~~~~~----~~~e~~--p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  419 (553)
                      ...+......+    ++.-+.  .+.......+.+.-+=.+..+++|.+.|.++...+......++++..++..++=+++
T Consensus       120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~  199 (432)
T PF06963_consen  120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL  199 (432)
T ss_pred             HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            11221111111    112222  222223333333333446788999999998887776666666666666665554443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1237|consensus

Probab=91.47  E-value=15  Score=39.26  Aligned_cols=64  Identities=11%  Similarity=-0.116  Sum_probs=42.9

Q ss_pred             CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        331 SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      +.++++--.++.|++-.+...+. .-+.-+-+|++.|+.++++......+|..++..+.......
T Consensus       457 Si~W~iPQyvLig~~Evf~~vg~-lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~  520 (571)
T KOG1237|consen  457 SILWQIPQYVLLGAGEVFTSVGG-LEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFS  520 (571)
T ss_pred             eHHHHHHHHHHHHHHHHHHhhhh-HHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444555555544443332 23444668999999999999999999999998888655433

>KOG3762|consensus

Probab=91.29  E-value=0.12  Score=52.90  Aligned_cols=68  Identities=16%  Similarity=-0.019  Sum_probs=49.1

Q ss_pred             HHHhhhhhHHHHhhHHHHHHhhCCCCChH-HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHH
Q psy15864        245 FIGQFGGMTTLQTYAVGIFESIHAPLDPY-FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAA  312 (553)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i  312 (553)
                      .+..+.....+...++.++.+.|++.... .+....-+..+++.+++|+++||+.+|+.++++..+..+
T Consensus        20 ~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v   88 (618)
T KOG3762|consen   20 YLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV   88 (618)
T ss_pred             eeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            34445556667778888888889865443 555566688999999999999999887776665544433

>KOG1479|consensus

Probab=90.32  E-value=3.9  Score=41.02  Aligned_cols=60  Identities=17%  Similarity=-0.041  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHH----HHHHHHHhhhhcc
Q psy15864        237 YAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAE----LGGALLCVVLIHY  296 (553)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~----~~g~~~~g~l~dr  296 (553)
                      ..+.+++..++....++.+..-.+++....-....+......+.+.+    ++..+.-.++.-|
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~   82 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR   82 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556666667777766766655433222333333333333    3344444445555

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=89.95  E-value=1.9  Score=41.83  Aligned_cols=88  Identities=16%  Similarity=0.111  Sum_probs=45.0

Q ss_pred             CCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH-hhccchhhHHHHHHH
Q psy15864        330 DSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML-DTFHLWGTLYFYAAI  408 (553)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~-~~~g~~~~~~~~~~~  408 (553)
                      .+.+++++..+++|...|.-. |+...+...  -...-....+.....-++|+..++.+.+++. ...|..+..+..+.+
T Consensus       103 ~~~~Vly~lt~vIG~LVG~Ei-PL~mrml~~--r~a~~k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~  179 (508)
T COG4262         103 PSRLVLYALTAVIGVLVGAEI-PLLMRMLQR--RQAKAKDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLC  179 (508)
T ss_pred             hHHHHHHHHHHHHHHHHhcch-HHHHHHHHH--HHHHHHhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHH
Confidence            355666777777777665544 332233222  0011111222333447777777777777654 345555555555555


Q ss_pred             HHHHHhhheEEc
Q psy15864        409 SVVGTLYMYFVM  420 (553)
Q Consensus       409 ~~~~~~~~~~~~  420 (553)
                      ..+++++..+.+
T Consensus       180 Nl~aAvv~~fll  191 (508)
T COG4262         180 NLAAAVVTLFLL  191 (508)
T ss_pred             HHHHHHHHHHHH
Confidence            555554444433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=88.61  E-value=4.4  Score=42.24  Aligned_cols=113  Identities=14%  Similarity=0.035  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcc--cC------------CC--------CChhHHHHH
Q psy15864        282 AELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLS--YG------------WD--------SPLVPTVFL  339 (553)
Q Consensus       282 ~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~--~~------------~~--------~~~~~~~~~  339 (553)
                      ++++..++..+++++++|.+++.+..+.+.+..+++++..+....  ++            ..        +.|...+..
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            344556667889999999998777666666666666654321100  00            00        011111111


Q ss_pred             HHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q psy15864        340 VLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD  394 (553)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~  394 (553)
                      +..-.........+-|.+++|+++.+.-.+..++....++++.++++.+..++..
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222333457899999999998999999999999999999888877766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=88.24  E-value=6.1  Score=40.49  Aligned_cols=113  Identities=12%  Similarity=0.061  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcc----c---------CCC-C---------ChhHHHH
Q psy15864        282 AELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLS----Y---------GWD-S---------PLVPTVF  338 (553)
Q Consensus       282 ~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~----~---------~~~-~---------~~~~~~~  338 (553)
                      ++++..++..++++++.|.+++.+.+..+....+++++..+....    +         ..+ .         .|...+.
T Consensus        74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~  153 (509)
T COG3202          74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF  153 (509)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence            456677778889999999888877777777777777665441110    0         011 0         1222222


Q ss_pred             HHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q psy15864        339 LVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD  394 (553)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~  394 (553)
                      ..+.-........-+-|..+.|++..+.-.+..++.+...+++..+++.+..++..
T Consensus       154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            22222222233333456788999999988999999999998888888877777654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=87.62  E-value=3.7  Score=40.40  Aligned_cols=60  Identities=10%  Similarity=-0.096  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHhhhhcc
Q psy15864        236 PYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAELGGALLCVVLIHY  296 (553)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~g~~~~g~l~dr  296 (553)
                      +++.+..+........+.+...|.|.+- ..+-...-.++...+.+..++|+.+..++..+
T Consensus       245 ril~LG~~qslFE~smy~FVflWtPaL~-~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  245 RILLLGLIQSLFEGSMYLFVFLWTPALD-PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             hhHHHHHHHHHHHHHHHHheeeeeceec-CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3445555555666666666667777764 21222334577777788889998888665543

>KOG3574|consensus

Probab=87.44  E-value=6.2  Score=39.09  Aligned_cols=60  Identities=10%  Similarity=0.083  Sum_probs=31.5

Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHH--HHHHHHhhhhc-----ccCCcceeecc
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATLLLGVAEL--GGALLCVVLIH-----YTGKRPLALIS  306 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~g~~~~g~l~d-----r~Grr~~l~~~  306 (553)
                      +.+..+...+.... ..|.+++..+.+-...   .++.+..-  .--+++.+++|     |+|||+..++-
T Consensus        38 ~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~---a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp  104 (510)
T KOG3574|consen   38 FLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ---AIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVP  104 (510)
T ss_pred             HHHHHcCCchhHhh-hhHHHhcCCCcchhhh---hhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeee
Confidence            33445554444444 7787777555442211   11111111  12356667777     99999876654

>KOG1479|consensus

Probab=86.75  E-value=5.2  Score=40.10  Aligned_cols=110  Identities=15%  Similarity=0.047  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceee
Q psy15864        279 LGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLI  358 (553)
Q Consensus       279 ~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      +.+..++|.+.+.++-+. +||...+ ..++=.+..-++.+........--.+.++.++...++++..|-.. .+...+.
T Consensus       292 fN~~d~vG~~~a~~~~~~-~~r~l~i-~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt-sl~m~~a  368 (406)
T KOG1479|consen  292 FNVFDLIGSILAALLTWP-DPRKLTI-PVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT-SLIMMYA  368 (406)
T ss_pred             hHHHHHhhhhhhhcccCC-CCceehH-HHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh-hheehhc
Confidence            667788886666665544 3443333 222222222222111000000002345566667777777665444 4556888


Q ss_pred             ccccccchhhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        359 GEVFPNNIRATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       359 ~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      ...+|++.+-.+ |....+..++|+..+.+++++
T Consensus       369 Pk~v~~~e~e~a-G~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  369 PKQVKPSEKEAA-GNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             CCCCChHHHHHH-HHHHHHHHHHHHHHhhHHHHH
Confidence            888888886554 444444445555554444443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=83.25  E-value=6.3  Score=40.57  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHHHHhhhhccccceeeccccccch
Q psy15864        334 VPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNI  366 (553)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  366 (553)
                      ..++..++.+++.+...+.+ +.+.+ .+|++.
T Consensus       108 ~~~~~v~~~g~~~~~~q~s~-~gla~-~fp~~~  138 (437)
T TIGR00939       108 TTMASVVIINSGMALLQGSL-FGLAG-VFPSTY  138 (437)
T ss_pred             HHHHHHHHHHhhhhhhcccc-hhhcc-cCCHHH
Confidence            33444445555544444333 35544 567654

>KOG3312|consensus

Probab=82.98  E-value=1.4  Score=36.33  Aligned_cols=7  Identities=43%  Similarity=0.506  Sum_probs=2.6

Q ss_pred             hhhhhHH
Q psy15864         29 KKKEKKA   35 (553)
Q Consensus        29 ~~~~~~~   35 (553)
                      +|+.||.
T Consensus        44 dK~sKKL   50 (186)
T KOG3312|consen   44 DKQSKKL   50 (186)
T ss_pred             HHHHHHH
Confidence            3333333

>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)

Probab=82.96  E-value=0.38  Score=44.35  Aligned_cols=18  Identities=0%  Similarity=0.211  Sum_probs=0.0

Q ss_pred             HHHHHHhhheEEcccCCC
Q psy15864        408 ISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       408 ~~~~~~~~~~~~~pet~~  425 (553)
                      +.+++++++|+++.+++.
T Consensus       173 L~LFlaiLIWlY~H~~~~  190 (381)
T PF05297_consen  173 LLLFLAILIWLYVHDQRH  190 (381)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHhcCCCC
Confidence            334455666777777764

LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.

>PRK10263 DNA translocase FtsK; Provisional

Probab=81.50  E-value=3.3  Score=47.46  Aligned_cols=20  Identities=25%  Similarity=0.330  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHhhhhcccC
Q psy15864        279 LGVAELGGALLCVVLIHYTG  298 (553)
Q Consensus       279 ~~i~~~~g~~~~g~l~dr~G  298 (553)
                      ...++.+|.+++..+..-+|
T Consensus        61 ~Nl~GiVGA~LAD~L~~LFG   80 (1355)
T PRK10263         61 HNLGGMPGAWLADTLFFIFG   80 (1355)
T ss_pred             ccccchHHHHHHHHHHHHHh
Confidence            44556666666666555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	553
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		2e-16

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 155/370 (41%), Gaps = 60/370 (16%)
Query: 90  GTFLYKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLH------- 142
           G  L  M +P+     Y+AE+   H+RG L +      IFG +    +  F+        
Sbjct: 139 GVGLASMLSPM-----YIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASW 193
Query: 143 -----WR----SAAILNLLFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTP 193
                WR    S  I  LLF +L    LY +PESP WL+S+G+ ++A   L  + G    
Sbjct: 194 LNTDGWRYMFASECIPALLFLML----LYTVPESPRWLMSRGKQEQAEGILRKIMG---- 245
Query: 194 DKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMT 253
               T  +Q  + I+ S       D  R+   R+ M    ++   ++ S+F   QF G+ 
Sbjct: 246 ---NTLATQAVQEIKHS------LDHGRKTGGRLLMFGVGVIVIGVMLSIF--QQFVGIN 294
Query: 254 TLQTYAVGIFESIHAPLD-PYFXXXXXXXXXXXXXXXXXXXIHYTGKRPLALISTGGSAA 312
            +  YA  +F+++ A  D                       +   G++PL +I   G A 
Sbjct: 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI 354
Query: 313 CFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTH---ICIRLLPWMLIGEVFPNNIRAT 369
               +     F+        L+  +F V AAF      +C     W+L+ E+FPN IR  
Sbjct: 355 GMFSLG--TAFYTQAPGIVALLSMLFYV-AAFAMSWGPVC-----WVLLSEIFPNAIRGK 406
Query: 370 XXXXXXXXXYIFAFAVNKLYYPMLDT-------FHLWGTLYFYAAISVVGTLYMYFVMPE 422
                    ++  + V+   +PM+D        FH   + + Y  + V+  L+M+  +PE
Sbjct: 407 ALAIAVAAQWLANYFVS-WTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465
Query: 423 TEGRTLRDIE 432
           T+G+TL ++E
Sbjct: 466 TKGKTLEELE 475

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	553
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.85
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.83
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.8
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.76
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.67
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.64
2xut_A	524	Proton/peptide symporter family protein; transport	99.56
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.43
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.42
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.42
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.37
2xut_A	524	Proton/peptide symporter family protein; transport	99.28
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.63

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=5.6e-32  Score=282.90  Aligned_cols=331  Identities=23%  Similarity=0.393  Sum_probs=246.9

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc------------chHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL------------HWRSAAILNLLFP  154 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l------------gWr~~f~i~~i~~  154 (553)
                      -+|+++|+|.+  .+++++|++|++|+++|++..++.+.+..+|.+++++++...            .||+++.+.++++
T Consensus       131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (491)
T 4gc0_A          131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA  210 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence            47999998754  678889999999999999999999999999999888776432            6999999999999


Q ss_pred             HHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcch
Q psy15864        155 ILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFL  234 (553)
Q Consensus       155 li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (553)
                      ++.+++.+++||||+|+..+++.+++.+.+++......   ...+..+........+.          ....  ......
T Consensus       211 ~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~  275 (491)
T 4gc0_A          211 LLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL---ATQAVQEIKHSLDHGRK----------TGGR--LLMFGV  275 (491)
T ss_dssp             HHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----------HTTH--HHHSCC
T ss_pred             hhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch---hHHHHHHHHHHHHhhhh----------hhhH--HHHhcc
Confidence            99999999999999999999999999988877643211   11111111111111110          0001  111123


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHH
Q psy15864        235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAAC  313 (553)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~  313 (553)
                      ++..+......+.++.+.+.+.+|.+.+....+..... .....+.++..++++++++++.||+|||+.++.+..++.++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~  355 (491)
T 4gc0_A          276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG  355 (491)
T ss_dssp             THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH
Confidence            34455566667777888888889999988877665433 35566778889999999999999999999999888888877


Q ss_pred             HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864        314 FIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML  393 (553)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~  393 (553)
                      .+.++.....     ....+..++..+++..+++.++.+++++|.+|++|++.|++++|+...++++++++++.+++.+.
T Consensus       356 ~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~  430 (491)
T 4gc0_A          356 MFSLGTAFYT-----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMD  430 (491)
T ss_dssp             HHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHC
T ss_pred             HHHHHHHHhc-----ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766654331     22333444445555556667777888899999999999999999999999999999998877654


Q ss_pred             h------hccchhhHHHHHHHHHHHHhhheEEcccCCCCChHHHHHHHhccC
Q psy15864        394 D------TFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKG  439 (553)
Q Consensus       394 ~------~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~  439 (553)
                      +      ..+....++++++++++..++.++++|||+|+++||++++++.+.
T Consensus       431 ~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          431 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence            3      234455677888888888888889999999999999998876554

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.85  E-value=3.4e-22  Score=208.67  Aligned_cols=162  Identities=15%  Similarity=0.079  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcc---------cCCCCChhHHHHHHHHHH
Q psy15864        274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLS---------YGWDSPLVPTVFLVLAAF  344 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  344 (553)
                      +..+...+|.++|++++|+++||+|||++++++.++++++.++.++.......         ..+.+.+.+++++++.|+
T Consensus        59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~  138 (491)
T 4gc0_A           59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI  138 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence            45556778999999999999999999999999999999998887742110000         014567788999999999


Q ss_pred             HHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-------cchhhHHHHHHHHHHHHhhhe
Q psy15864        345 LTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF-------HLWGTLYFYAAISVVGTLYMY  417 (553)
Q Consensus       345 ~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~  417 (553)
                      +.|......+ +|++|.+|++.|+...++.+....++..+++.+........       .+|+.+.....+..+..++..
T Consensus       139 g~G~~~~~~~-~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (491)
T 4gc0_A          139 GVGLASMLSP-MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL  217 (491)
T ss_dssp             HHHHHHHHHH-HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred             HHHHHHHHHH-HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence            9877776554 99999999999999999888877777776665555443321       234555555666666667777


Q ss_pred             EEcccC------CCCChHHHHHHHh
Q psy15864        418 FVMPET------EGRTLRDIEEHFA  436 (553)
Q Consensus       418 ~~~pet------~~~~~~~~~~~~~  436 (553)
                      +++||+      +++..++.+.+.+
T Consensus       218 ~~~peSp~~L~~~~~~~~a~~~l~~  242 (491)
T 4gc0_A          218 YTVPESPRWLMSRGKQEQAEGILRK  242 (491)
T ss_dssp             GGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCCCChHHHHHcCchhHHHHhHHH
Confidence            889998      5555555554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.83  E-value=1.5e-21  Score=201.24  Aligned_cols=296  Identities=15%  Similarity=0.110  Sum_probs=193.1

Q ss_pred             ccccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----c-hHHHHHHHHHHHHHHHH
Q psy15864         87 EEKGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----H-WRSAAILNLLFPILALC  159 (553)
Q Consensus        87 ~~~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----g-Wr~~f~i~~i~~li~~i  159 (553)
                      ---.|+++|++.+  .+...+++.|++|+++|++++++...+..+|.++++++++.+    + ||++|++.++++++..+
T Consensus       122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~  201 (451)
T 1pw4_A          122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL  201 (451)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3456888888754  456779999999999999999999999999999999888764    7 99999999988877654


Q ss_pred             -HhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHH
Q psy15864        160 -ALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYA  238 (553)
Q Consensus       160 -~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (553)
                       .++++||+|+........+.             ......+   ...    ..    ....   .......+...+.+.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~----~~----~~~~---~~~~~~~~~~~~~~~~  254 (451)
T 1pw4_A          202 FAFAMMRDTPQSCGLPPIEEY-------------KNDYPDD---YNE----KA----EQEL---TAKQIFMQYVLPNKLL  254 (451)
T ss_dssp             HHHHHCCCSSTTTCCCSCTTT-------------CCC---------------------------CCTHHHHHHTSSCHHH
T ss_pred             HHHhhccCCHhhcCCCChhhh-------------ccccccc---chh----hh----hccc---ccccchHHHHHcCHHH
Confidence             44568888764321111000             0000000   000    00    0000   0000111112222333


Q ss_pred             HHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhccc--CCcceeecchhHHH-HH
Q psy15864        239 IVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYT--GKRPLALISTGGSA-AC  313 (553)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~--Grr~~l~~~~~~~~-i~  313 (553)
                      +...+..+........+..+.|.++.. .+.+.. ..+...+.+++.+++.+++|+++||+  |||+.+.++.++.. ++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  334 (451)
T 1pw4_A          255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA  334 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            344444444555566677788888766 565543 34667778899999999999999999  99988776665554 33


Q ss_pred             HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHH-HHHHHHHHhHHH
Q psy15864        314 FIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYI-FAFAVNKLYYPM  392 (553)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~-~~~i~~~~~~~~  392 (553)
                      .+++.+.       ...+.+..++..++.+++.+... +..+.++.|.+|++.||++.|+.+.+..+ ++.++|.+.+.+
T Consensus       335 ~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l  406 (451)
T 1pw4_A          335 TIVYWMN-------PAGNPTVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  406 (451)
T ss_dssp             HHHTTSC-------CTTCHHHHHHHHHHHHHHHTHHH-HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh-------cccCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332220       01244455555566666554444 33358889999999999999999999999 999999999999


Q ss_pred             HhhccchhhHHHHHHHHHHHHhhhe
Q psy15864        393 LDTFHLWGTLYFYAAISVVGTLYMY  417 (553)
Q Consensus       393 ~~~~g~~~~~~~~~~~~~~~~~~~~  417 (553)
                      .+..++...+++.+++.++..++.+
T Consensus       407 ~~~~g~~~~~~~~~~~~~~~~~~~~  431 (451)
T 1pw4_A          407 VDFFGWDGGFMVMIGGSILAVILLI  431 (451)
T ss_dssp             HHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            9988876666666666665555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.80  E-value=4e-19  Score=182.34  Aligned_cols=266  Identities=13%  Similarity=-0.006  Sum_probs=177.8

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----c-------------------
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----H-------------------  142 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----g-------------------  142 (553)
                      -+|+++|++.+  .+...++++|++|+++|++++++...+..+|.+++++++..+     +                   
T Consensus       122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  201 (438)
T 3o7q_A          122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYK  201 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhh
Confidence            46888888765  456779999999999999999999999999999999988765     2                   


Q ss_pred             ------hHHHHHHHHHHHHHHHHHhcc--ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHh
Q psy15864        143 ------WRSAAILNLLFPILALCALYF--IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKR  214 (553)
Q Consensus       143 ------Wr~~f~i~~i~~li~~i~~~~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (553)
                            ||+.|++.+++.++..++.++  .||+++....+.+.                .                    
T Consensus       202 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----------------~--------------------  245 (438)
T 3o7q_A          202 HSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ----------------G--------------------  245 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST----------------T--------------------
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc----------------c--------------------
Confidence                  999998887777666444333  56665321000000                0                    


Q ss_pred             cCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHH-HHhh-CCCCC-hHHHHHHHHHHHHHHHHHHh
Q psy15864        215 LGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGI-FESI-HAPLD-PYFATLLLGVAELGGALLCV  291 (553)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~-~~~~~~~~~i~~~~g~~~~g  291 (553)
                           .....++.+++.+..+    ...+..+........+..++|.+ +++. +.+.. ..+...+..++.+++.+++|
T Consensus       246 -----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  316 (438)
T 3o7q_A          246 -----SFSASLSRLARIRHWR----WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT  316 (438)
T ss_dssp             -----SHHHHHHHHTTCSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----chhhhHHHHHhChHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence                 0001122223322222    22222333334445556677777 6554 65533 34666677889999999999


Q ss_pred             hhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhh
Q psy15864        292 VLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATAS  371 (553)
Q Consensus       292 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~  371 (553)
                      +++||+|||+++.++.++.+++.+++.+         ..+.+. ++..++.+++.+... +..+.+..|.+|++ |+.+.
T Consensus       317 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~  384 (438)
T 3o7q_A          317 WLISRFAPHKVLAAYALIAMALCLISAF---------AGGHVG-LIALTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGS  384 (438)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHH---------CCHHHH-HHHHHHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHH
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHH---------cCCcHH-HHHHHHHHHHHHHHH-HHHHHHHHhhcccc-ccchh
Confidence            9999999999988888777776665554         333333 334455666655444 44568888999977 88888


Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHhhcc-chhhHHHHHHHHHHH
Q psy15864        372 GASGSSSYIFAFAVNKLYYPMLDTFH-LWGTLYFYAAISVVG  412 (553)
Q Consensus       372 ~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~  412 (553)
                      ++.. +..+++.++|.+.+.+.+..+ +...+.+.+++.++.
T Consensus       385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            8876 677999999999999999888 665555544443333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.76  E-value=7e-18  Score=175.87  Aligned_cols=330  Identities=12%  Similarity=-0.009  Sum_probs=178.9

Q ss_pred             cccccccccccc--chhhhhhhhhccCccc--ccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHH
Q psy15864         88 EKGTFLYKMAAP--LVLVLTYVAEITQPHL--RGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALC  159 (553)
Q Consensus        88 ~~gr~~~G~ga~--~~~~~~~i~e~~p~~~--Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i  159 (553)
                      --+|+++|++.+  .+...++++|++|+++  |+.+.+++..+..+|.++++.+++.+    |||++|++.+++.++.++
T Consensus       112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  191 (491)
T 4aps_A          112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLL  191 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            346888888755  4577899999999988  77788888999999999999888775    899999998877766655


Q ss_pred             Hhccc-cCCc----eeeeecCChHHHHHHHHH----------------HcCCCCCcchHHHHHHHHHHHHHHHHHhcCCC
Q psy15864        160 ALYFI-PESP----HWLISQGRMQEASASLCW----------------LRGWVTPDKVQTELSQITKAIEESELKRLGKD  218 (553)
Q Consensus       160 ~~~~l-pEsp----~~l~~~~~~~~a~~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (553)
                      +.++. ++..    .......+.++..+..+.                .....+.+........................
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (491)
T 4aps_A          192 VYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISS  271 (491)
T ss_dssp             HHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhc
Confidence            44332 2211    101111122333322221                11111111100000000000000000000000


Q ss_pred             CCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCC-CChHHHHHHHHHHHHHHHHHHhhhhcc
Q psy15864        219 GQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAP-LDPYFATLLLGVAELGGALLCVVLIHY  296 (553)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~i~~~~g~~~~g~l~dr  296 (553)
                      ..  .. ....++...   .+...+..+..+..+.....+++.+... .+.+ ....+...+..++.+++.++.++++||
T Consensus       272 ~~--~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r  345 (491)
T 4aps_A          272 VK--VT-STEHLRVVS---YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA  345 (491)
T ss_dssp             -------------CTT---HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cc--cc-HHHHHHHHH---HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH
Confidence            00  00 000011111   1111111222222233333444555443 3333 334456667778888889999999999


Q ss_pred             cCCcceee-----cchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhh
Q psy15864        297 TGKRPLAL-----ISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATAS  371 (553)
Q Consensus       297 ~Grr~~l~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~  371 (553)
                      +|||+...     +++++.+++.+++.............+.+..++..++.+++.+... +..++++.|.+|++.||+++
T Consensus       346 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~  424 (491)
T 4aps_A          346 WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLIS-PVGLSVTTKLAPKAFNSQMM  424 (491)
T ss_dssp             TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTT-THHHHHHHHHTTTTCSSSST
T ss_pred             HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCHHHHHHHH
Confidence            99998766     5555555555554443221111112345555556666666554443 44568999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        372 GASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       372 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      |+.+....+++++++.+.+.+.+. +....+.++++++++..++.+++.++.++
T Consensus       425 g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          425 SMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988776543 44556666666666666666666665543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.67  E-value=1e-17  Score=170.81  Aligned_cols=263  Identities=13%  Similarity=0.053  Sum_probs=151.0

Q ss_pred             ccccchhchhhhhHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHhcccc-CCceeeeecCChHHHHHHHHHHcC
Q psy15864        114 HLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILALCALYFIP-ESPHWLISQGRMQEASASLCWLRG  189 (553)
Q Consensus       114 ~~Rg~~~~~~~~~~~lG~~l~~~l~~~l---gWr~~f~i~~i~~li~~i~~~~lp-Esp~~l~~~~~~~~a~~~l~~~~~  189 (553)
                      ++|+...+....+..+|..+++.+++++   +||+.|++.++++++.++++++.+ |+|+.. ...+.+          .
T Consensus       134 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~  202 (417)
T 2cfq_A          134 RRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA-TVANAV----------G  202 (417)
T ss_dssp             HHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSS-CSSSSS----------S
T ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccccccc-cccccc----------c
Confidence            4567777777777777777777776655   899999988877666655555544 443210 000000          0


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhh-CC
Q psy15864        190 WVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESI-HA  268 (553)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~  268 (553)
                       ...                        .......+..+++.+..+...+..    +.....+..+..+.|.++... +.
T Consensus       203 -~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  253 (417)
T 2cfq_A          203 -ANH------------------------SAFSLKLALELFRQPKLWFLSLYV----IGVSCTYDVFDQQFANFFTSFFAT  253 (417)
T ss_dssp             -SCC------------------------CCCCHHHHHHHTTCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred             -ccc------------------------ccccHHHHHHHhcCCchhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence             000                        000001111222222222222111    111112222223344444332 11


Q ss_pred             ---CCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHH
Q psy15864        269 ---PLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAF  344 (553)
Q Consensus       269 ---~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (553)
                         +.. ..+...+..++.+++.++.++++||+|||+++.++.++.+++.+++.+         ..+.+.+++..++.++
T Consensus       254 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~  324 (417)
T 2cfq_A          254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF---------ATSALEVVILKTLHMF  324 (417)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---------CCSHHHHHHHTTHHHH
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---------hccHHHHHHHHHHHHH
Confidence               011 123444556778889999999999999999887776666555444332         3334444444444444


Q ss_pred             HHhhhhccccceeeccccccchhhhhhhHH-HHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        345 LTHICIRLLPWMLIGEVFPNNIRATASGAS-GSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       345 ~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~-~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      +.+....+ .+.+++|.+|++.||++.++. +....++++++|.+.+.+.+..++...+.+.+++.++..++.+++.||+
T Consensus       325 ~~~~~~~~-~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          325 EVPFLLVG-CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            43333222 357899999999999999984 7778899999999999998877766666666666666666666667765


Q ss_pred             CCC
Q psy15864        424 EGR  426 (553)
Q Consensus       424 ~~~  426 (553)
                      +..
T Consensus       404 ~~~  406 (417)
T 2cfq_A          404 GPL  406 (417)
T ss_dssp             CTT
T ss_pred             Cch
Confidence            443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.64  E-value=3e-17  Score=164.78  Aligned_cols=252  Identities=14%  Similarity=0.060  Sum_probs=159.2

Q ss_pred             cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHH-Hhc
Q psy15864         90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALC-ALY  162 (553)
Q Consensus        90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i-~~~  162 (553)
                      .|+++|++.+  .+...+++.|++|+++|++++++...+..+|.++++.+++.+    +||+.|++.+++.++..+ ..+
T Consensus        94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (375)
T 2gfp_A           94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR  173 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777655  456678999999999999999999999999999999888766    899999999888877765 445


Q ss_pred             cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864        163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS  242 (553)
Q Consensus       163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (553)
                      ++||+++....+                                            ......++..++++..+...+   
T Consensus       174 ~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~---  206 (375)
T 2gfp_A          174 WMPETRPVDAPR--------------------------------------------TRLLTSYKTLFGNSGFNCYLL---  206 (375)
T ss_dssp             SSCCCSTTTCCC--------------------------------------------CCTTTCSTHHHHHHHHHHHHH---
T ss_pred             HCcccCCCCccc--------------------------------------------ccHHHHHHHHhcCcchHHHHH---
Confidence            588876421000                                            000111222222222222222   


Q ss_pred             HHHHHhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhH-HHHHHHHHHH
Q psy15864        243 LFFIGQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGG-SAACFIVVAV  319 (553)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~-~~i~~~~~~~  319 (553)
                       ..+........+..+.|.++++ .+.+. .......+..++.+++.++.+++.||++++  +..+..+ ..++.+++..
T Consensus       207 -~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~  283 (375)
T 2gfp_A          207 -MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIP  283 (375)
T ss_dssp             -HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence             2222233333444444444433 34332 234556677788899999999999999872  2222222 1111111111


Q ss_pred             HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                      ... .    ..+.+..++..++.+++.+... +...+++.|.+| +.||++.|+.+....+++.++|.+.+.+.+..++
T Consensus       284 ~~~-~----~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  355 (375)
T 2gfp_A          284 DWF-G----VMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQG  355 (375)
T ss_dssp             HHH-H----HHHHHHHHHHHHHHHHHHHHTS-STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHH
T ss_pred             hhh-c----cccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            000 0    1133444555666666665544 444588999998 8999999999999999999999999888765553

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.56  E-value=7.3e-15  Score=154.35  Aligned_cols=75  Identities=15%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             ccccccccccc--chhhhhhhhhccCcccccchhch---hhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHH
Q psy15864         89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSAT---ASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALC  159 (553)
Q Consensus        89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~---~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i  159 (553)
                      -.|+++|++.+  .+...+++.|++|+++|+++.++   +..+..+|.++++++++.+    +||++|++.+++.++.++
T Consensus       114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  193 (524)
T 2xut_A          114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV  193 (524)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            35778887654  46778999999999999877766   8889999999999988765    899999998888777655


Q ss_pred             Hhcc
Q psy15864        160 ALYF  163 (553)
Q Consensus       160 ~~~~  163 (553)
                      +.++
T Consensus       194 ~~~~  197 (524)
T 2xut_A          194 FFWL  197 (524)
T ss_dssp             HHHS
T ss_pred             HHHH
Confidence            5443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.43  E-value=3.1e-13  Score=138.78  Aligned_cols=183  Identities=12%  Similarity=0.006  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHH
Q psy15864        236 PYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACF  314 (553)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~  314 (553)
                      +.++..++..+........+..++|.+.++. .+. +..+...+..++.+++.+++|+++||+|||++++++.++.+++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~  106 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  106 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            3344444444444444555666677776666 543 45677888899999999999999999999999999999888888


Q ss_pred             HHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q psy15864        315 IVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD  394 (553)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~  394 (553)
                      +++++....     ..+.+.+++++++.|++.+....+. .++++|.+|++.|+.++++......++.+++|.+.+.+.+
T Consensus       107 ~~~~~~~~~-----~~~~~~l~~~~~l~G~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          107 LFMGFVPWA-----TSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHCHHH-----HSSSSHHHHHHHHHHHHHHHTHHHH-HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHhhhhc-----cccHHHHHHHHHHHHHHhhhccchH-HHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877652210     1356778888899888877665554 4899999999999999999999999999999999998888


Q ss_pred             hcc-chhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864        395 TFH-LWGTLYFYAAISVVGTLYMYFVMPETEG  425 (553)
Q Consensus       395 ~~g-~~~~~~~~~~~~~~~~~~~~~~~pet~~  425 (553)
                      ..+ |...+++.+++.++..++.++++||+..
T Consensus       181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            888 8888888777777777776677887643

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.42  E-value=6.2e-13  Score=136.07  Aligned_cols=151  Identities=6%  Similarity=-0.189  Sum_probs=121.2

Q ss_pred             HHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHH
Q psy15864        240 VTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA  318 (553)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  318 (553)
                      .+++.++...........+.|.+.+..+.+... .+...+..++.+++.+++|+++||+|||++++++.++.+++.++..
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~  109 (438)
T 3o7q_A           30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW  109 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            333334444444556667788888888876543 4777888899999999999999999999999999999998888873


Q ss_pred             HHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH-hhcc
Q psy15864        319 VYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML-DTFH  397 (553)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~-~~~g  397 (553)
                      ....      ..+.+.+++.+++.|++.+...... .++++|.+|++.|+.++++.+....++..+++.+.+.+. ...+
T Consensus       110 ~~~~------~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          110 PAAE------IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHH------TTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             hccc------cccHHHHHHHHHHHHhhHHHhhhhH-HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3222      6678888899999999887766555 599999999999999999999999999999999999887 4444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.42  E-value=3.2e-13  Score=135.27  Aligned_cols=171  Identities=11%  Similarity=-0.024  Sum_probs=134.3

Q ss_pred             HHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhh
Q psy15864        246 IGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFH  324 (553)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~  324 (553)
                      +.............|.+.++.+.+.. ..+...+..++.+++.++.|+++||+|||++++++.++.+++.++..+     
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----   84 (375)
T 2gfp_A           10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT-----   84 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----
Confidence            33344455555666777777776544 346777888999999999999999999999999999998888887776     


Q ss_pred             cccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHH
Q psy15864        325 LSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYF  404 (553)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~  404 (553)
                          .++.+.+++.+++.+++.+...... ..++.|.+|++.|+.+.++......++..++|.+.+.+.+..+|...+.+
T Consensus        85 ----~~~~~~l~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  159 (375)
T 2gfp_A           85 ----TSSLTVLIAASAMQGMGTGVGGVMA-RTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF  159 (375)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             ----hccHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence                3456677788888888776555444 58999999999999999999999999999999999988877787777777


Q ss_pred             HHHHHHHHHhhheEEcccCCCC
Q psy15864        405 YAAISVVGTLYMYFVMPETEGR  426 (553)
Q Consensus       405 ~~~~~~~~~~~~~~~~pet~~~  426 (553)
                      .+++.++..++.++++||++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          160 LLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHCcccCCC
Confidence            7777777666677778887543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.37  E-value=2.1e-12  Score=134.25  Aligned_cols=167  Identities=11%  Similarity=-0.027  Sum_probs=126.2

Q ss_pred             HHhhhhhHHHHhhHHHHHHh------hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcc-cCCcceeecchhHHHHHHHHH
Q psy15864        246 IGQFGGMTTLQTYAVGIFES------IHAPLD-PYFATLLLGVAELGGALLCVVLIHY-TGKRPLALISTGGSAACFIVV  317 (553)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~------~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~  317 (553)
                      +.....++.+..+++.++..      .+.+.. ..+...+..++.+++++++|+++|| +|||++++++.++.+++.+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~  102 (491)
T 4aps_A           23 MWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL  102 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence            33333444444555555543      465533 3477778889999999999999999 899999999998888888777


Q ss_pred             HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccch--hhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864        318 AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNI--RATASGASGSSSYIFAFAVNKLYYPMLDT  395 (553)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~  395 (553)
                      ++         .++.+.+++++++.|++.+...... .++++|.+|++.  |+.++++.+....++..++|.+.+.+.+.
T Consensus       103 ~~---------~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  172 (491)
T 4aps_A          103 AL---------PFGASALFGSIILIIIGTGFLKPNV-STLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA  172 (491)
T ss_dssp             HS---------CCSTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH---------hhhHHHHHHHHHHHHHHHHhccchH-HHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence            65         6678888889999998877666554 599999999988  77788888899999999999999999888


Q ss_pred             ccchhhHHHHHHHHHHHHhhheEEccc
Q psy15864        396 FHLWGTLYFYAAISVVGTLYMYFVMPE  422 (553)
Q Consensus       396 ~g~~~~~~~~~~~~~~~~~~~~~~~pe  422 (553)
                      .+|...+++.+++.++..++.++..|+
T Consensus       173 ~g~~~~f~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4aps_A          173 AGYHVAFSLAAIGMFIGLLVYYFGGKK  199 (491)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            887777777655555554444333343

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.28  E-value=1.5e-11  Score=128.98  Aligned_cols=156  Identities=13%  Similarity=-0.015  Sum_probs=118.6

Q ss_pred             hHHHHhhHHHHH-HhhC------CCC-ChHHHHHHHHHHHHHHHHHHhhhhccc-CCcceeecchhHHHHHHHHHHHHHH
Q psy15864        252 MTTLQTYAVGIF-ESIH------APL-DPYFATLLLGVAELGGALLCVVLIHYT-GKRPLALISTGGSAACFIVVAVYAQ  322 (553)
Q Consensus       252 ~~~~~~~~~~~~-~~~g------~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~  322 (553)
                      ++.+..+++.++ +..+      .+. +..+...+..++.+++.+++|+++||+ |||++++++.++.+++.+++.+   
T Consensus        28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---  104 (524)
T 2xut_A           28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI---  104 (524)
T ss_dssp             HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---
Confidence            344444555554 3456      543 445778888899999999999999999 9999999988888888877766   


Q ss_pred             hhcccCCC-CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhH---HHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864        323 FHLSYGWD-SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGA---SGSSSYIFAFAVNKLYYPMLDTFHL  398 (553)
Q Consensus       323 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~---~~~~~~~~~~i~~~~~~~~~~~~g~  398 (553)
                            .. +.+.+++.+++.+++.+...... .++++|.+|++.|+.+.++   .+....++..++|.+.+.+.+..+|
T Consensus       105 ------~~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  177 (524)
T 2xut_A          105 ------FEHSVQGFYTGLFLIALGSGGIKPLV-SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA  177 (524)
T ss_dssp             ------TSSCHHHHHHHHHHHHHHHHTTHHHH-HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred             ------hcccHHHHHHHHHHHHHhccccchhH-HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence                  55 67777888888888776655444 5899999999999876665   8888899999999999988887887


Q ss_pred             hhhHHHHHHHHHHHHhhhe
Q psy15864        399 WGTLYFYAAISVVGTLYMY  417 (553)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~  417 (553)
                      ...+.+.+++.++..++.+
T Consensus       178 ~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          178 AVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7777666665555444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.63  E-value=3.3e-09  Score=107.62  Aligned_cols=152  Identities=11%  Similarity=-0.061  Sum_probs=84.7

Q ss_pred             HhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHH---HHHH
Q psy15864        247 GQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVV---AVYA  321 (553)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~  321 (553)
                      ..+..+.....++|.+++. .+.+. +..+..++..++.+++++++|+++||+|||++++++.++.+++...+   .+..
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~   97 (417)
T 2cfq_A           18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP   97 (417)
T ss_dssp             HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444555677777654 56654 44577888889999999999999999999999887766554322111   1110


Q ss_pred             HhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeecccccc--chhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccch
Q psy15864        322 QFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPN--NIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW  399 (553)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~  399 (553)
                      ..     ....   +..+.+.+.+.+..+.+.. ..+.+..+.  +.|+...|.....+.++..++|.+.+.+.+ .++.
T Consensus        98 ~~-----~~~~---~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~  167 (417)
T 2cfq_A           98 LL-----QYNI---LVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQ  167 (417)
T ss_dssp             HH-----HTTC---CHHHHGGGSSTTHHHHTTH-HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSH
T ss_pred             HH-----HHHH---HHHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchh
Confidence            00     0011   1112222221112111111 222222222  345666677767778888899988888776 3555


Q ss_pred             hhHHHHHHH
Q psy15864        400 GTLYFYAAI  408 (553)
Q Consensus       400 ~~~~~~~~~  408 (553)
                      ..+++.+++
T Consensus       168 ~~f~~~~~~  176 (417)
T 2cfq_A          168 FVFWLGSGC  176 (417)
T ss_dssp             HHHTTTTTT
T ss_pred             HHHHHHHHH
Confidence            444443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	553
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	3e-16
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-08
d1zroa2	314	a.264.1.1 (A:283-596) Erythrocyte binding antigen	3e-06
d1zroa2	314	a.264.1.1 (A:283-596) Erythrocyte binding antigen	9e-06
d1zroa2	314	a.264.1.1 (A:283-596) Erythrocyte binding antigen	2e-05
d1zroa2	314	a.264.1.1 (A:283-596) Erythrocyte binding antigen	2e-05
d1zroa1	275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	9e-06
d1zroa1	275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	1e-05
d1zroa1	275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	1e-05
d1zroa1	275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	3e-05
d1zroa1	275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	1e-04
d1zroa1	275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	2e-04
d1zroa1	275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	3e-04
d1zroa1	275	a.264.1.1 (A:8-282) Erythrocyte binding antigen re	5e-04
d2c6ja1	294	a.264.1.1 (A:15-308) Duffy receptor, alpha form {P	5e-05
d2c6ja1	294	a.264.1.1 (A:15-308) Duffy receptor, alpha form {P	6e-05
d2c6ja1	294	a.264.1.1 (A:15-308) Duffy receptor, alpha form {P	8e-04
d2c6ja1	294	a.264.1.1 (A:15-308) Duffy receptor, alpha form {P	0.001
d2c6ja1	294	a.264.1.1 (A:15-308) Duffy receptor, alpha form {P	0.002
d2c6ja1	294	a.264.1.1 (A:15-308) Duffy receptor, alpha form {P	0.002
d2c6ja1	294	a.264.1.1 (A:15-308) Duffy receptor, alpha form {P	0.003
d2c6ja1	294	a.264.1.1 (A:15-308) Duffy receptor, alpha form {P	0.003
d1v9da_	332	a.207.1.1 (A:) Diaphanous protein homolog 1, dia1	1e-04
d1k4ta3	230	e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase	7e-04
d1k4ta3	230	e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase	8e-04
d1y2oa1	248	a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain	0.001
d2lefa_	86	a.21.1.1 (A:) Lymphoid enhancer-binding factor, LE	0.001
d1v64a_	108	a.21.1.1 (A:) Nucleolar transcription factor 1 (Up	0.003
d1oisa_	223	e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-te	0.004

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 78.6 bits (192), Expect = 3e-16
 Identities = 48/337 (14%), Positives = 98/337 (29%), Gaps = 37/337 (10%)

Query: 104 LTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL------HWRSAAILNLLFPILA 157
              +        RG + +  +     G      L             +  +      ++A
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197

Query: 158 LCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGK 217
           L A   + ++P                    G    ++ + +         E EL     
Sbjct: 198 LFAFAMMRDTPQS-----------------CGLPPIEEYKNDYPDDYNEKAEQELTA--- 237

Query: 218 DGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATL 277
              ++   +  +    L   AI     ++ ++G +    TY   +           +A  
Sbjct: 238 ---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD--KSSWAYF 292

Query: 278 LLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTV 337
           L   A + G LLC  +     +               I   VY          +P V  +
Sbjct: 293 LYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP----AGNPTVDMI 348

Query: 338 FLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML-DTF 396
            +++  FL +  + +L  +   E+ P     TA+G +G   Y+              D F
Sbjct: 349 CMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 407

Query: 397 HLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEE 433
              G        S++  + +  VM   + R  + ++E
Sbjct: 408 GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 35/339 (10%), Positives = 78/339 (23%), Gaps = 20/339 (5%)

Query: 92  FLYKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNL 151
           F   +  PL+     V  I      G      +              +F   R+     +
Sbjct: 90  FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCV 149

Query: 152 LFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESE 211
            + + A         +  ++   G     +  L  L  +   D   +     T A     
Sbjct: 150 GWALGASIVGIMFTINNQFVFWLGSG--CALILAVLLFFAKTDAPSSA----TVANAVGA 203

Query: 212 LKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD 271
                        +R        L    V+  + +          ++     +       
Sbjct: 204 NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGY 263

Query: 272 PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDS 331
                 LL  + +  A L +  I                    +   + +   +   + +
Sbjct: 264 VTTMGELLNASIMFFAPLIINRIGGKNA-------------LLLAGTIMSVRIIGSSFAT 310

Query: 332 PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYP 391
             +  V L          + +  +  I   F     AT            A     +   
Sbjct: 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370

Query: 392 ML-DTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLR 429
            + ++    G       +++  TL   F +      +L 
Sbjct: 371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 19  DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKK 51
            + +A K+ +K++E + K +  K  K+K EK++
Sbjct: 299 MFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331

>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 230

class: Multi-domain proteins (alpha and beta)
fold: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
superfamily: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
family: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
domain: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 1   MDSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
           M +  K+ I   ++    D+ +  +  K + E +   K+  KE+K K K++ +K  K+
Sbjct: 86  MTNEEKNIITNLSK---CDFTQMSQYFKAQTEAR---KQMSKEEKLKIKEENEKLLKE 137

>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 230

class: Multi-domain proteins (alpha and beta)
fold: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
superfamily: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
family: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
domain: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 13/56 (23%)

Query: 19  DWKKAKKKEKKKKEKKAKK-------------KEKKKEKKKKEKKKKKKKKKKKKK 61
           DW+K    E+K       K              E +K+  K+EK K K++ +K  K
Sbjct: 81  DWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLK 136

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 19  DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
              +      KK + + + K    +K + E KK +KK +  K 
Sbjct: 111 LDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKN 153

>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Lymphoid enhancer-binding factor, LEF1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 19 DWKKAKKKEKKKKEKKAKK-----KEKKKEKKKKEKKKKKKKKKKKK 60
           W    ++E+ K  + A+K      +       ++   KKKK+K++K
Sbjct: 40 RWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86

>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 19  DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNN 71
            WK   +KEK    KK  +K+K  E +     +   ++++++        N +
Sbjct: 51  QWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNIS 103

>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 223

class: Multi-domain proteins (alpha and beta)
fold: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
superfamily: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
family: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
domain: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 17/60 (28%)

Query: 19  DWKKAKKKEKKKKEKKA-----------------KKKEKKKEKKKKEKKKKKKKKKKKKK 61
           D+ +  K+                           +KE+KK+   +EKK+ + +++K ++
Sbjct: 69  DFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEE 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	553
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.8
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.61
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.45
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.82

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.2e-20  Score=191.53  Aligned_cols=300  Identities=15%  Similarity=0.102  Sum_probs=182.4

Q ss_pred             cccccccccc--cchhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----chHHHHHHHHHHHHHHHHHh
Q psy15864         89 KGTFLYKMAA--PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILALCAL  161 (553)
Q Consensus        89 ~gr~~~G~ga--~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----gWr~~f~i~~i~~li~~i~~  161 (553)
                      -.|++.|++.  ..+...++++|++|+++|+++++++..+..+|.+++++++...     +||+.|++.++++++..++.
T Consensus       121 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  200 (447)
T d1pw4a_         121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA  200 (447)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHH
Confidence            3567777764  3467778999999999999999999999999998888766543     89999999888887775544


Q ss_pred             -ccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHH
Q psy15864        162 -YFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIV  240 (553)
Q Consensus       162 -~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (553)
                       ++++++|+........+..             .+.....   .+.           ............+.....+.++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
T d1pw4a_         201 FAMMRDTPQSCGLPPIEEYK-------------NDYPDDY---NEK-----------AEQELTAKQIFMQYVLPNKLLWY  253 (447)
T ss_dssp             HHHCCCSSTTTCCCSCTTTC-------------CC---------------------------CCTHHHHHHTSSCHHHHH
T ss_pred             HHhcccchhhcccchhhhhh-------------hhcccch---hhc-----------cccccchhhHHHHHHHcCchHHH
Confidence             4466665432111100000             0000000   000           00000111111222222333344


Q ss_pred             HHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHH
Q psy15864        241 TSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA  318 (553)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  318 (553)
                      .....+......+.+..+.+.++.+ .+.+.. ..+...+..++.+++.+++|+++||++|+...........+..+...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (447)
T d1pw4a_         254 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  333 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHH
Confidence            4444444445555666677776644 344432 34666778888999999999999999988755444433333322222


Q ss_pred             HHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHH-HHHHHHhHHHHhhcc
Q psy15864        319 VYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFA-FAVNKLYYPMLDTFH  397 (553)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~-~i~~~~~~~~~~~~g  397 (553)
                      ....    ....+.+..++..++.+++.+... +..++++.|.+|++.||++.|+.+.++++++ +++|.+.+.+.+..|
T Consensus       334 ~~~~----~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g  408 (447)
T d1pw4a_         334 VYWM----NPAGNPTVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  408 (447)
T ss_dssp             HTTS----CCTTCHHHHHHHHHHHHHHHTHHH-HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHh----cccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2111    112344445555555555543333 4445888999999999999999988888754 567888899999988


Q ss_pred             chhhHHHHHHHHHHHHhhheEEc
Q psy15864        398 LWGTLYFYAAISVVGTLYMYFVM  420 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~  420 (553)
                      +...+.+++++.++..++.+++.
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         409 WDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666666555554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=6.3e-16  Score=153.59  Aligned_cols=145  Identities=14%  Similarity=0.079  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccc
Q psy15864        274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLL  353 (553)
Q Consensus       274 ~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      .......++.+++.++.+++.||+|+|+.+.++.++.+++.+++.+         ..+.+..++..++.+++.+......
T Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~~~~  333 (417)
T d1pv7a_         263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF---------ATSALEVVILKTLHMFEVPFLLVGC  333 (417)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT---------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc---------ccccchhhHHHHHHHHHHHHHHHHH
Confidence            3445566778889999999999999999998888888777776665         5667777777777787776665444


Q ss_pred             cceeeccccccchhhhhhhHHH-HHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccCCCCCh
Q psy15864        354 PWMLIGEVFPNNIRATASGASG-SSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTL  428 (553)
Q Consensus       354 ~~~~~~e~~p~~~Rg~~~~~~~-~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  428 (553)
                       .+++.|.+|++.|+++.++.. ....++++++|.+.|++.+..|+...+++.+++.++..++.++++++.+....
T Consensus       334 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  408 (417)
T d1pv7a_         334 -FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             -HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred             -HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence             589999999999999999764 45668899999999999999998888888888877777777777776655544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=5.1e-14  Score=141.81  Aligned_cols=183  Identities=11%  Similarity=-0.006  Sum_probs=133.7

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHH
Q psy15864        234 LLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAA  312 (553)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i  312 (553)
                      ++..++.+++.++..+.....+....|.+ .+.|.+. +..+..++..++.+++++++|+++||+|||+++.++.++.++
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~  101 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  101 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            33344444444444443334445555644 4456654 556888899999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHH
Q psy15864        313 CFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPM  392 (553)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~  392 (553)
                      +.+++++....     ..+.+.+++.+++.+++.+....+. ..+++|.+|++.|+.++++.+....+++.+++.+.+.+
T Consensus       102 ~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_         102 VMLFMGFVPWA-----TSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHCHHH-----HSSSSHHHHHHHHHHHHHHHTHHHH-HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHhhccccchh-----hhhHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            88877663321     3467788888888888877666555 48999999999999999999999999999999888877


Q ss_pred             Hhhc-cchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864        393 LDTF-HLWGTLYFYAAISVVGTLYMYFVMPET  423 (553)
Q Consensus       393 ~~~~-g~~~~~~~~~~~~~~~~~~~~~~~pet  423 (553)
                      .... +|+..+++.+++.++..++.+++++++
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            7665 445556666666666666666666554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=3.7e-09  Score=103.60  Aligned_cols=175  Identities=9%  Similarity=-0.032  Sum_probs=99.4

Q ss_pred             HHhhhhhHHHHhhHHHHHH-hhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHh
Q psy15864        246 IGQFGGMTTLQTYAVGIFE-SIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQF  323 (553)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~  323 (553)
                      +..+........++|.++. ..|.+.. ..+..++..++.+++.++.|+++||+|||++++++.++..++.+++......
T Consensus        17 f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~   96 (417)
T d1pv7a_          17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG   96 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3333444445556666554 4676543 4577788889999999999999999999999988887777777666553211


Q ss_pred             hcccCCCCChhHHHHHHHHHHHHhhhhccccceeecccccc--chhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhh
Q psy15864        324 HLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPN--NIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGT  401 (553)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~  401 (553)
                      .     ......++...+.+.+.+....+.. .......++  +.+....+........+..+++.+.+.+.+. +++..
T Consensus        97 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~  169 (417)
T d1pv7a_          97 P-----LLQYNILVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFV  169 (417)
T ss_dssp             H-----HHHTTCHHHHHHTTTTGGGGGTTHH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHH
T ss_pred             h-----hHHHHHHHHHHHhhhcccccccchh-hcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-ccccc
Confidence            0     0111112222222222222222221 111222222  2334455555666667777777777766554 44555


Q ss_pred             HHHHHHHHHHHHhhheEEcccCCCCC
Q psy15864        402 LYFYAAISVVGTLYMYFVMPETEGRT  427 (553)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~pet~~~~  427 (553)
                      +........+..++.+++.+++....
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (417)
T d1pv7a_         170 FWLGSGCALILAVLLFFAKTDAPSSA  195 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCSCSSS
T ss_pred             ccchhhHHHHHHHHHHHHhcccccch
Confidence            66666666666666666677664433