Psyllid ID: psy16066

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQVSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFD
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccc
Coil and Loop (DISEMBL)
mflnrphyLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQVSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQqesytykdpITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCIsiqkesnvIDKIFD
Flexible Loop (DISEMBL)
MFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQVSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQcisiqkesnvidkifd
Low Complexity Region (SEG)
MFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQVSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFD
Disordered region (IsUnstruct)
*****PHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQVSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVI*****
Disordered Region (DISOPRED)
MFL**PHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQVSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDK***
Disordered Region (DISEMBL)
MFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQVSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFD
Disordered Region (DISPRO)
MFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQVSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQVSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q7QIL8	433	Eukaryotic translation in	yes	N/A	0.675	0.284	0.829	5e-58
Q2F5R8	445	Eukaryotic translation in	N/A	N/A	0.675	0.276	0.829	1e-56
Q1HQY6	435	Eukaryotic translation in	N/A	N/A	0.675	0.282	0.804	3e-56
B4KY00	434	Eukaryotic translation in	N/A	N/A	0.714	0.299	0.766	6e-55
B3M4D9	434	Eukaryotic translation in	N/A	N/A	0.714	0.299	0.766	6e-55
B4PK98	435	Eukaryotic translation in	N/A	N/A	0.714	0.298	0.766	6e-55
B3NDH5	435	Eukaryotic translation in	N/A	N/A	0.714	0.298	0.766	6e-55
B4N3B0	434	Eukaryotic translation in	N/A	N/A	0.714	0.299	0.766	6e-55
B4QMY7	435	Eukaryotic translation in	N/A	N/A	0.659	0.275	0.804	6e-55
O77410	435	Eukaryotic translation in	yes	N/A	0.659	0.275	0.804	6e-55

>sp|Q7QIL8|EIF3E_ANOGA Eukaryotic translation initiation factor 3 subunit E OS=Anopheles gambiae GN=eIF3-S6 PE=3 SV=2

 Score =  223 bits (568), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 112/123 (91%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLIIDMFL +P YLNAIQTMCPHILRYLATAVIINR +RNALKDL+KVIQQESYTY+D
Sbjct: 223 GRDLIIDMFLYKPQYLNAIQTMCPHILRYLATAVIINRGRRNALKDLIKVIQQESYTYRD 282

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLEHLYV+FDFE AR+KL EC  V+ NDFF++ CL EFVENARLMIFETFCRIHQC
Sbjct: 283 PITEFLEHLYVNFDFEGARKKLHECQTVIVNDFFIIGCLTEFVENARLMIFETFCRIHQC 342

Query: 168 ISI 170
           I+I
Sbjct: 343 ITI 345

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Anopheles gambiae (taxid: 7165)

>sp|Q2F5R8|EIF3E_BOMMO Eukaryotic translation initiation factor 3 subunit E OS=Bombyx mori GN=eIF3-S6 PE=2 SV=1

 Score =  218 bits (556), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 113/123 (91%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL +P YLNAIQTMCPHILRYLATAVIINRS+RNALKDLVKVIQQE+YTY+D
Sbjct: 236 GRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKVIQQEAYTYRD 295

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEF+EHLYV+FDFE+AR KL +C  VL  DFFL+ACL+EFVENARLMIFETFCRIHQ 
Sbjct: 296 PITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFLIACLEEFVENARLMIFETFCRIHQV 355

Query: 168 ISI 170
           ISI
Sbjct: 356 ISI 358

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Bombyx mori (taxid: 7091)

>sp|Q1HQY6|EIF3E_AEDAE Eukaryotic translation initiation factor 3 subunit E OS=Aedes aegypti GN=eIF3-S6 PE=2 SV=1

 Score =  217 bits (553), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 99/123 (80%), Positives = 111/123 (90%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL +P YLNAIQTMCPHILRYLATAVIINR +RNALKDL+K+IQQESYTY+D
Sbjct: 225 GRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVIINRGRRNALKDLIKIIQQESYTYRD 284

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLEHLYV+FDFE AR KL EC  V+ NDFF++ CL EF+ENARLMIFETFCRIHQC
Sbjct: 285 PITEFLEHLYVNFDFEGARMKLHECQTVIVNDFFIIGCLQEFIENARLMIFETFCRIHQC 344

Query: 168 ISI 170
           I+I
Sbjct: 345 ITI 347

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aedes aegypti (taxid: 7159)

>sp|B4KY00|EIF3E_DROMO Eukaryotic translation initiation factor 3 subunit E OS=Drosophila mojavensis GN=eIF3-S6 PE=3 SV=1

 Score =  213 bits (542), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 118/133 (88%), Gaps = 3/133 (2%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL +P YLNAIQTMCPHI+RYLATAV+INR++RNALKDL+KVIQQESYTY+D
Sbjct: 225 GRDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRD 284

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLE LYV+FDFE AR KL EC  V+ NDFF+VACL+EFVE+ARLMIFETFCRIHQC
Sbjct: 285 PITEFLECLYVNFDFEGARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQC 344

Query: 168 ISIQKESNVIDKI 180
           I+I   S + DK+
Sbjct: 345 ITI---SMLADKL 354

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila mojavensis (taxid: 7230)

>sp|B3M4D9|EIF3E_DROAN Eukaryotic translation initiation factor 3 subunit E OS=Drosophila ananassae GN=eIF3-S6 PE=3 SV=1

 Score =  213 bits (542), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 118/133 (88%), Gaps = 3/133 (2%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL +P YLNAIQTMCPHI+RYLATAV+INR++RNALKDL+KVIQQESYTY+D
Sbjct: 225 GRDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRD 284

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLE LYV+FDFE AR KL EC  V+ NDFF+VACL+EFVE+ARLMIFETFCRIHQC
Sbjct: 285 PITEFLECLYVNFDFEGARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQC 344

Query: 168 ISIQKESNVIDKI 180
           I+I   S + DK+
Sbjct: 345 ITI---SMLADKL 354

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila ananassae (taxid: 7217)

>sp|B4PK98|EIF3E_DROYA Eukaryotic translation initiation factor 3 subunit E OS=Drosophila yakuba GN=eIF3-S6 PE=3 SV=1

 Score =  213 bits (542), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 118/133 (88%), Gaps = 3/133 (2%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL +P YLNAIQTMCPHI+RYLATAV+INR++RNALKDL+KVIQQESYTY+D
Sbjct: 225 GRDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRD 284

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLE LYV+FDFE AR KL EC  V+ NDFF+VACL+EFVE+ARLMIFETFCRIHQC
Sbjct: 285 PITEFLECLYVNFDFEGARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQC 344

Query: 168 ISIQKESNVIDKI 180
           I+I   S + DK+
Sbjct: 345 ITI---SMLADKL 354

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila yakuba (taxid: 7245)

>sp|B3NDH5|EIF3E_DROER Eukaryotic translation initiation factor 3 subunit E OS=Drosophila erecta GN=eIF3-S6 PE=3 SV=1

 Score =  213 bits (542), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 118/133 (88%), Gaps = 3/133 (2%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL +P YLNAIQTMCPHI+RYLATAV+INR++RNALKDL+KVIQQESYTY+D
Sbjct: 225 GRDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRD 284

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLE LYV+FDFE AR KL EC  V+ NDFF+VACL+EFVE+ARLMIFETFCRIHQC
Sbjct: 285 PITEFLECLYVNFDFEGARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQC 344

Query: 168 ISIQKESNVIDKI 180
           I+I   S + DK+
Sbjct: 345 ITI---SMLADKL 354

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila erecta (taxid: 7220)

>sp|B4N3B0|EI3E2_DROWI Eukaryotic translation initiation factor 3 subunit E-2 OS=Drosophila willistoni GN=eIF3-S6-2 PE=3 SV=1

 Score =  213 bits (542), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 118/133 (88%), Gaps = 3/133 (2%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL +P YLNAIQTMCPHI+RYLATAV+INR++RNALKDL+KVIQQESYTY+D
Sbjct: 225 GRDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRD 284

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLE LYV+FDFE AR KL EC  V+ NDFF+VACL+EFVE+ARLMIFETFCRIHQC
Sbjct: 285 PITEFLECLYVNFDFEGARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQC 344

Query: 168 ISIQKESNVIDKI 180
           I+I   S + DK+
Sbjct: 345 ITI---SMLADKL 354

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila willistoni (taxid: 7260)

>sp|B4QMY7|EIF3E_DROSI Eukaryotic translation initiation factor 3 subunit E OS=Drosophila simulans GN=eIF3-S6 PE=3 SV=1

 Score =  213 bits (541), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 99/123 (80%), Positives = 113/123 (91%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL +P YLNAIQTMCPHI+RYLATAV+INR++RNALKDL+KVIQQESYTY+D
Sbjct: 225 GRDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRD 284

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLE LYV+FDFE AR KL EC  V+ NDFF+VACL+EFVE+ARLMIFETFCRIHQC
Sbjct: 285 PITEFLECLYVNFDFEGARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQC 344

Query: 168 ISI 170
           I+I
Sbjct: 345 ITI 347

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila simulans (taxid: 7240)

>sp|O77410|EIF3E_DROME Eukaryotic translation initiation factor 3 subunit E OS=Drosophila melanogaster GN=eIF3-S6 PE=2 SV=1

 Score =  213 bits (541), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 99/123 (80%), Positives = 113/123 (91%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL +P YLNAIQTMCPHI+RYLATAV+INR++RNALKDL+KVIQQESYTY+D
Sbjct: 225 GRDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRD 284

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLE LYV+FDFE AR KL EC  V+ NDFF+VACL+EFVE+ARLMIFETFCRIHQC
Sbjct: 285 PITEFLECLYVNFDFEGARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQC 344

Query: 168 ISI 170
           I+I
Sbjct: 345 ITI 347

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
121543721	438	putative eukaryotic translation initiati	0.675	0.280	0.853	5e-58
332373482	440	unknown [Dendroctonus ponderosae]	0.681	0.281	0.846	1e-57
91079354	440	PREDICTED: similar to putative eukaryoti	0.681	0.281	0.854	2e-57
312376442	433	hypothetical protein AND_12720 [Anophele	0.675	0.284	0.829	6e-57
307184310	437	Probable eukaryotic translation initiati	0.681	0.283	0.830	2e-56
322800079	442	hypothetical protein SINV_09055 [Solenop	0.681	0.280	0.830	2e-56
58376726	433	AGAP006944-PA [Anopheles gambiae str. PE	0.675	0.284	0.829	2e-56
332019917	445	Eukaryotic translation initiation factor	0.681	0.278	0.830	3e-56
242004658	436	eukaryotic translation initiation factor	0.675	0.282	0.837	6e-56
307213129	437	Probable eukaryotic translation initiati	0.675	0.281	0.829	8e-56

>gi|121543721|gb|ABM55547.1| putative eukaryotic translation initiation factor 3 subunit 6 [Maconellicoccus hirsutus]

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 105/123 (85%), Positives = 116/123 (94%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            +DLIIDMFL RP+YLNAIQTMCPHILRYLATAVIINR +RNALKDLVKVIQQESYTY+D
Sbjct: 229 GKDLIIDMFLYRPNYLNAIQTMCPHILRYLATAVIINRGRRNALKDLVKVIQQESYTYRD 288

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEF+EHLYV+FDFE AR+KL+EC  V+ NDFFL+ACLDEF+ENARLMIFETFCRIHQC
Sbjct: 289 PITEFIEHLYVNFDFEGARQKLSECQIVIYNDFFLIACLDEFIENARLMIFETFCRIHQC 348

Query: 168 ISI 170
           ISI
Sbjct: 349 ISI 351

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373482|gb|AEE61882.1| unknown [Dendroctonus ponderosae]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/124 (84%), Positives = 116/124 (93%)

Query: 47  VSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYK 106
           + R+LII+MFL RPHYLNAIQTMCPHILRYLATAVIINR +R+ALKDLVKVIQQESYTY+
Sbjct: 231 MGRELIIEMFLYRPHYLNAIQTMCPHILRYLATAVIINRGRRSALKDLVKVIQQESYTYR 290

Query: 107 DPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQ 166
           DPITEFLEHLYV+FDF+ AR+KL EC  VL NDFFL++CLDEFVENARLMIFETFCRIHQ
Sbjct: 291 DPITEFLEHLYVNFDFDGARQKLRECETVLFNDFFLISCLDEFVENARLMIFETFCRIHQ 350

Query: 167 CISI 170
           CISI
Sbjct: 351 CISI 354

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079354|ref|XP_969967.1| PREDICTED: similar to putative eukaryotic translation initiation factor 3 subunit 6 [Tribolium castaneum] gi|270003495|gb|EEZ99942.1| hypothetical protein TcasGA2_TC002738 [Tribolium castaneum]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/124 (85%), Positives = 116/124 (93%)

Query: 47  VSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYK 106
           + R+LIIDMFL RPHYLNAIQTMCPHILRYLATAVIINR +R+ALKDLVKVIQQESYTY+
Sbjct: 231 LGRELIIDMFLYRPHYLNAIQTMCPHILRYLATAVIINRVRRSALKDLVKVIQQESYTYR 290

Query: 107 DPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQ 166
           DPITEFLEHLYV+FDF+ AR+KL EC  VL NDFFL++CLDEFVENARLMIFETFCRIHQ
Sbjct: 291 DPITEFLEHLYVNFDFDGARQKLHECQSVLFNDFFLISCLDEFVENARLMIFETFCRIHQ 350

Query: 167 CISI 170
           CISI
Sbjct: 351 CISI 354

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312376442|gb|EFR23523.1| hypothetical protein AND_12720 [Anopheles darlingi]

 Score =  225 bits (573), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 113/123 (91%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLIIDMFL +P YLNAIQTMCPHILRYLATAVIINR +RNALKDL+KVIQQESYTY+D
Sbjct: 223 GRDLIIDMFLYKPQYLNAIQTMCPHILRYLATAVIINRGRRNALKDLIKVIQQESYTYRD 282

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLEHLYV+FDFE AR+KL EC  V+ NDFF++ CLDEF+ENARLMIFETFCRIHQC
Sbjct: 283 PITEFLEHLYVNFDFEGARKKLHECQTVIINDFFIIGCLDEFIENARLMIFETFCRIHQC 342

Query: 168 ISI 170
           I+I
Sbjct: 343 ITI 345

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184310|gb|EFN70768.1| Probable eukaryotic translation initiation factor 3 subunit E [Camponotus floridanus]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/124 (83%), Positives = 114/124 (91%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL RPHYLNAIQTMCPHILRYLA AVI+NRS+R+ LKDLVKVIQQESYTY+D
Sbjct: 229 GRDLIIEMFLYRPHYLNAIQTMCPHILRYLAAAVIVNRSRRSILKDLVKVIQQESYTYRD 288

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLEHLYV+FDF+ AR+KL EC  V+ NDFFL+A L+EFVENARLMIFETFCRIHQC
Sbjct: 289 PITEFLEHLYVNFDFDGARQKLQECQTVVFNDFFLIALLNEFVENARLMIFETFCRIHQC 348

Query: 168 ISIQ 171
           ISIQ
Sbjct: 349 ISIQ 352

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800079|gb|EFZ21185.1| hypothetical protein SINV_09055 [Solenopsis invicta]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/124 (83%), Positives = 114/124 (91%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL RPHYLNAIQTMCPHILRYLA AVI+NRS+R+ LKDLVKVIQQESYTY+D
Sbjct: 234 GRDLIIEMFLYRPHYLNAIQTMCPHILRYLAAAVIVNRSRRSILKDLVKVIQQESYTYRD 293

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLEHLYV+FDF+ AR+KL EC  V+ NDFFL+A L+EFVENARLMIFETFCRIHQC
Sbjct: 294 PITEFLEHLYVNFDFDGARQKLQECQTVVFNDFFLIALLNEFVENARLMIFETFCRIHQC 353

Query: 168 ISIQ 171
           ISIQ
Sbjct: 354 ISIQ 357

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58376726|ref|XP_308812.2| AGAP006944-PA [Anopheles gambiae str. PEST] gi|74804913|sp|Q7QIL8.2|EIF3E_ANOGA RecName: Full=Eukaryotic translation initiation factor 3 subunit E; Short=eIF3e; AltName: Full=Eukaryotic translation initiation factor 3 subunit 6 gi|55245898|gb|EAA04727.2| AGAP006944-PA [Anopheles gambiae str. PEST]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 112/123 (91%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLIIDMFL +P YLNAIQTMCPHILRYLATAVIINR +RNALKDL+KVIQQESYTY+D
Sbjct: 223 GRDLIIDMFLYKPQYLNAIQTMCPHILRYLATAVIINRGRRNALKDLIKVIQQESYTYRD 282

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLEHLYV+FDFE AR+KL EC  V+ NDFF++ CL EFVENARLMIFETFCRIHQC
Sbjct: 283 PITEFLEHLYVNFDFEGARKKLHECQTVIVNDFFIIGCLTEFVENARLMIFETFCRIHQC 342

Query: 168 ISI 170
           I+I
Sbjct: 343 ITI 345

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019917|gb|EGI60377.1| Eukaryotic translation initiation factor 3 subunit E [Acromyrmex echinatior]

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 103/124 (83%), Positives = 114/124 (91%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL RPHYLNAIQTMCPHILRYLA AVI+NRS+R+ LKDLVKVIQQESYTY+D
Sbjct: 235 GRDLIIEMFLYRPHYLNAIQTMCPHILRYLAAAVIVNRSRRSILKDLVKVIQQESYTYRD 294

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLEHLYV+FDF+ AR+KL EC  V+ NDFFL+A L+EFVENARLMIFETFCRIHQC
Sbjct: 295 PITEFLEHLYVNFDFDGARQKLQECQTVVFNDFFLIALLNEFVENARLMIFETFCRIHQC 354

Query: 168 ISIQ 171
           ISIQ
Sbjct: 355 ISIQ 358

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004658|ref|XP_002423197.1| eukaryotic translation initiation factor 3 subunit, putative [Pediculus humanus corporis] gi|212506162|gb|EEB10459.1| eukaryotic translation initiation factor 3 subunit, putative [Pediculus humanus corporis]

 Score =  222 bits (565), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 103/123 (83%), Positives = 114/123 (92%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RD IIDMFL R HYLNAIQTMCPHILRYLATAV+INRS+R++LKDLVKVIQQESYTY+D
Sbjct: 227 GRDNIIDMFLYRAHYLNAIQTMCPHILRYLATAVVINRSRRSSLKDLVKVIQQESYTYRD 286

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEF+EHLYV+FDF+ AR+KL EC  VL NDFFL+ACL+EFVENARLMIFETFCRIHQC
Sbjct: 287 PITEFIEHLYVNFDFDGARQKLHECHTVLFNDFFLIACLEEFVENARLMIFETFCRIHQC 346

Query: 168 ISI 170
           ISI
Sbjct: 347 ISI 349

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213129|gb|EFN88651.1| Probable eukaryotic translation initiation factor 3 subunit E [Harpegnathos saltator]

 Score =  221 bits (564), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 113/123 (91%)

Query: 48  SRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKD 107
            RDLII+MFL RPHYLNAIQTMCPHILRYLA AVI+NRS+R+ LKDLVKVIQQESYTY+D
Sbjct: 229 GRDLIIEMFLYRPHYLNAIQTMCPHILRYLAAAVIVNRSRRSILKDLVKVIQQESYTYRD 288

Query: 108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQC 167
           PITEFLEHLYV+FDF+ AR+KL EC  V+ NDFFL+A L+EFVENARLMIFETFCRIHQC
Sbjct: 289 PITEFLEHLYVNFDFDGARQKLQECQTVVFNDFFLIALLNEFVENARLMIFETFCRIHQC 348

Query: 168 ISI 170
           ISI
Sbjct: 349 ISI 351

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
FB|FBgn0025582	435	Int6 "Int6 homologue" [Drosoph	0.708	0.296	0.772	1.1e-50
ZFIN|ZDB-GENE-050208-283	446	eif3eb "eukaryotic translation	0.708	0.289	0.733	1.2e-47
UNIPROTKB|B5DGH9	445	eif3e "Eukaryotic translation	0.708	0.289	0.733	1.2e-47
UNIPROTKB|Q05AY2	446	eif3e-a "Eukaryotic translatio	0.708	0.289	0.733	1.2e-47
UNIPROTKB|Q6P7L9	446	eif3e "Eukaryotic translation	0.708	0.289	0.733	1.2e-47
UNIPROTKB|Q3T102	445	EIF3E "Eukaryotic translation	0.670	0.274	0.768	2e-47
UNIPROTKB|E2R1J6	445	EIF3E "Eukaryotic translation	0.670	0.274	0.768	2e-47
UNIPROTKB|E5RGA2	352	EIF3E "Eukaryotic translation	0.670	0.346	0.768	2e-47
UNIPROTKB|P60228	445	EIF3E "Eukaryotic translation	0.670	0.274	0.768	2e-47
UNIPROTKB|F1S1G0	446	EIF3E "Eukaryotic translation	0.670	0.273	0.768	2e-47

FB|FBgn0025582 Int6 "Int6 homologue" [Drosophila melanogaster (taxid:7227)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 102/132 (77%), Positives = 118/132 (89%)

Query:    49 RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDP 108
             RDLII+MFL +P YLNAIQTMCPHI+RYLATAV+INR++RNALKDL+KVIQQESYTY+DP
Sbjct:   226 RDLIIEMFLYKPLYLNAIQTMCPHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRDP 285

Query:   109 ITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCI 168
             ITEFLE LYV+FDFE AR KL EC  V+ NDFF+VACL+EFVE+ARLMIFETFCRIHQCI
Sbjct:   286 ITEFLECLYVNFDFEGARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQCI 345

Query:   169 SIQKESNVIDKI 180
             +I   S + DK+
Sbjct:   346 TI---SMLADKL 354

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS;NAS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS;NAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=NAS

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-050208-283 eif3eb "eukaryotic translation initiation factor 3, subunit E, b" [Danio rerio (taxid:7955)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 99/135 (73%), Positives = 113/135 (83%)

Query:    49 RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIIN---RSKRNALKDLVKVIQQESYTY 105
             RD II++FL +P YLNAIQTMCPHILRYL+TAVI N   R +R  LKDLVKVIQQESYTY
Sbjct:   230 RDNIIELFLYQPQYLNAIQTMCPHILRYLSTAVITNKDVRKRRQVLKDLVKVIQQESYTY 289

Query:   106 KDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIH 165
             KDPITEF+E LYV+FDF+SA+ KL EC  VL NDFFLVACL++F+ENARL IFETFCRIH
Sbjct:   290 KDPITEFVECLYVNFDFDSAQRKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIH 349

Query:   166 QCISIQKESNVIDKI 180
             QCISI   S + DK+
Sbjct:   350 QCISI---SMLADKL 361

GO:0005737 "cytoplasm" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|B5DGH9 eif3e "Eukaryotic translation initiation factor 3 subunit E" [Salmo salar (taxid:8030)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 99/135 (73%), Positives = 113/135 (83%)

Query:    49 RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIIN---RSKRNALKDLVKVIQQESYTY 105
             RD II++FL +P YLNAIQTMCPHILRYL TAVI N   R +R  LKDLVKVIQQESYTY
Sbjct:   230 RDNIIELFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTY 289

Query:   106 KDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIH 165
             KDPITEF+E LYV+FDF+SA++KL EC  VL NDFFLVACL++F+ENARL IFETFCRIH
Sbjct:   290 KDPITEFVECLYVNFDFDSAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIH 349

Query:   166 QCISIQKESNVIDKI 180
             QCISI   S + DK+
Sbjct:   350 QCISI---SMLADKL 361

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q05AY2 eif3e-a "Eukaryotic translation initiation factor 3 subunit E-A" [Xenopus laevis (taxid:8355)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 99/135 (73%), Positives = 112/135 (82%)

Query:    49 RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIIN---RSKRNALKDLVKVIQQESYTY 105
             RD IID+FL +P YLNAIQTMCPHILRYL TAVI N   R +R  LKDLVKVIQQESYTY
Sbjct:   230 RDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTY 289

Query:   106 KDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIH 165
             KDPITEF+E LYV+FDF+ A++KL EC  VL NDFFLVACL++F+ENARL IFETFCRIH
Sbjct:   290 KDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIH 349

Query:   166 QCISIQKESNVIDKI 180
             QCISI   S + DK+
Sbjct:   350 QCISI---SMLADKL 361

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q6P7L9 eif3e "Eukaryotic translation initiation factor 3 subunit E" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 99/135 (73%), Positives = 112/135 (82%)

Query:    49 RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIIN---RSKRNALKDLVKVIQQESYTY 105
             RD IID+FL +P YLNAIQTMCPHILRYL TAVI N   R +R  LKDLVKVIQQESYTY
Sbjct:   230 RDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTY 289

Query:   106 KDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIH 165
             KDPITEF+E LYV+FDF+ A++KL EC  VL NDFFLVACL++F+ENARL IFETFCRIH
Sbjct:   290 KDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIH 349

Query:   166 QCISIQKESNVIDKI 180
             QCISI   S + DK+
Sbjct:   350 QCISI---SMLADKL 361

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q3T102 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Bos taurus (taxid:9913)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 96/125 (76%), Positives = 107/125 (85%)

Query:    49 RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIIN---RSKRNALKDLVKVIQQESYTY 105
             RD IID+FL +P YLNAIQTMCPHILRYL TAVI N   R +R  LKDLVKVIQQESYTY
Sbjct:   229 RDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTY 288

Query:   106 KDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIH 165
             KDPITEF+E LYV+FDF+ A++KL EC  VL NDFFLVACL++F+ENARL IFETFCRIH
Sbjct:   289 KDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIH 348

Query:   166 QCISI 170
             QCISI
Sbjct:   349 QCISI 353

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0016605 "PML body" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

UNIPROTKB|E2R1J6 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Canis lupus familiaris (taxid:9615)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 96/125 (76%), Positives = 107/125 (85%)

Query:    49 RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIIN---RSKRNALKDLVKVIQQESYTY 105
             RD IID+FL +P YLNAIQTMCPHILRYL TAVI N   R +R  LKDLVKVIQQESYTY
Sbjct:   229 RDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTY 288

Query:   106 KDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIH 165
             KDPITEF+E LYV+FDF+ A++KL EC  VL NDFFLVACL++F+ENARL IFETFCRIH
Sbjct:   289 KDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIH 348

Query:   166 QCISI 170
             QCISI
Sbjct:   349 QCISI 353

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

UNIPROTKB|E5RGA2 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Homo sapiens (taxid:9606)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 96/125 (76%), Positives = 107/125 (85%)

Query:    49 RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIIN---RSKRNALKDLVKVIQQESYTY 105
             RD IID+FL +P YLNAIQTMCPHILRYL TAVI N   R +R  LKDLVKVIQQESYTY
Sbjct:   136 RDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTY 195

Query:   106 KDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIH 165
             KDPITEF+E LYV+FDF+ A++KL EC  VL NDFFLVACL++F+ENARL IFETFCRIH
Sbjct:   196 KDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIH 255

Query:   166 QCISI 170
             QCISI
Sbjct:   256 QCISI 260

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P60228 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Homo sapiens (taxid:9606)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 96/125 (76%), Positives = 107/125 (85%)

Query:    49 RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIIN---RSKRNALKDLVKVIQQESYTY 105
             RD IID+FL +P YLNAIQTMCPHILRYL TAVI N   R +R  LKDLVKVIQQESYTY
Sbjct:   229 RDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTY 288

Query:   106 KDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIH 165
             KDPITEF+E LYV+FDF+ A++KL EC  VL NDFFLVACL++F+ENARL IFETFCRIH
Sbjct:   289 KDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIH 348

Query:   166 QCISI 170
             QCISI
Sbjct:   349 QCISI 353

GO:0006446 "regulation of translational initiation" evidence=NAS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=NAS;IDA

GO:0005654 "nucleoplasm" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045947 "negative regulation of translational initiation" evidence=NAS

GO:0016605 "PML body" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IMP

GO:0000785 "chromatin" evidence=NAS

GO:0006413 "translational initiation" evidence=IC;IDA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1S1G0 EIF3E "Eukaryotic translation initiation factor 3 subunit E" [Sus scrofa (taxid:9823)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 96/125 (76%), Positives = 107/125 (85%)

Query:    49 RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIIN---RSKRNALKDLVKVIQQESYTY 105
             RD IID+FL +P YLNAIQTMCPHILRYL TAVI N   R +R  LKDLVKVIQQESYTY
Sbjct:   230 RDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTY 289

Query:   106 KDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIH 165
             KDPITEF+E LYV+FDF+ A++KL EC  VL NDFFLVACL++F+ENARL IFETFCRIH
Sbjct:   290 KDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIH 349

Query:   166 QCISI 170
             QCISI
Sbjct:   350 QCISI 354

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2UKS9	EIF3E_ASPOR	No assigned EC number	0.5151	0.6758	0.2727	yes	N/A
Q5ZLA5	EIF3E_CHICK	No assigned EC number	0.7539	0.6758	0.2764	yes	N/A
Q6DRI1	EI3EA_DANRE	No assigned EC number	0.7619	0.6758	0.2757	yes	N/A
Q54CC5	EIF3E_DICDI	No assigned EC number	0.5193	0.6703	0.2323	yes	N/A
P60228	EIF3E_HUMAN	No assigned EC number	0.7619	0.6758	0.2764	yes	N/A
P60229	EIF3E_MOUSE	No assigned EC number	0.7619	0.6758	0.2764	yes	N/A
Q5R8K9	EIF3E_PONAB	No assigned EC number	0.7619	0.6758	0.2764	yes	N/A
O61820	EIF3E_CAEEL	No assigned EC number	0.608	0.6813	0.2870	yes	N/A
Q5B973	EIF3E_EMENI	No assigned EC number	0.5303	0.6758	0.2745	yes	N/A
Q6P7L9	EIF3E_XENTR	No assigned EC number	0.7279	0.7142	0.2914	yes	N/A
Q3T102	EIF3E_BOVIN	No assigned EC number	0.7619	0.6758	0.2764	yes	N/A
O77410	EIF3E_DROME	No assigned EC number	0.8048	0.6593	0.2758	yes	N/A
Q641X8	EIF3E_RAT	No assigned EC number	0.7619	0.6758	0.2764	yes	N/A
Q29EX2	EIF3E_DROPS	No assigned EC number	0.8048	0.6758	0.2834	yes	N/A
A5AAA4	EIF3E_ASPNC	No assigned EC number	0.5227	0.6758	0.2721	yes	N/A
Q1LUA8	EI3EB_DANRE	No assigned EC number	0.7279	0.7142	0.2914	yes	N/A
Q4WY08	EIF3E_ASPFU	No assigned EC number	0.5303	0.6758	0.2727	yes	N/A
Q7QIL8	EIF3E_ANOGA	No assigned EC number	0.8292	0.6758	0.2840	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG2758|consensus	432		100.0
KOG2758|consensus	432		99.91
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	97.14
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	91.47
smart00753	88	PAM PCI/PINT associated module.	91.47

>KOG2758|consensus

Probab=100.00  E-value=4.3e-63  Score=442.06  Aligned_cols=139  Identities=70%  Similarity=1.118  Sum_probs=136.8

Q ss_pred             HHHHHhhhchhHHHHHHhCChhhhHHHHhhchhHHHHHHHHHHhh-hchhHHHHHHHHHHhhccccCCCcHHHHHHHHhh
Q psy16066         40 LVKVIQQVSRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIIN-RSKRNALKDLVKVIQQESYTYKDPITEFLEHLYV  118 (182)
Q Consensus        40 lVrvIqqEgrd~i~d~Fl~~~~Yln~IQt~cPhlLRYla~AvI~n-r~rr~~lkdlv~vI~qe~y~Y~DPiTeFl~~L~v  118 (182)
                      +|.++|++|||.|+|+|+++|.|||||||+|||||||||+||++| |+||+.|||+|+|||||+|+|+||+|||++||||
T Consensus       221 fv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyv  300 (432)
T KOG2758|consen  221 FVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYV  300 (432)
T ss_pred             HhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhh
Confidence            678999999999999999999999999999999999999999999 7889999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066        119 SFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVID  178 (182)
Q Consensus       119 ~fDFe~Aq~~L~~~e~v~~~DfFL~~~~~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~  178 (182)
                      +||||+||++|+|||+|+.|||||+++.|+|+|+||++|||||||||+||+|+|||+||+
T Consensus       301 n~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ARl~ifEtfCRIHqcIti~mLA~kLn  360 (432)
T KOG2758|consen  301 NYDFDGAQKKLRECEEVLVNDFFLVALLDEFLENARLLIFETFCRIHQCITIDMLADKLN  360 (432)
T ss_pred             ccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHheeHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999997

>KOG2758|consensus

Probab=99.91  E-value=5.6e-25  Score=197.59  Aligned_cols=90  Identities=52%  Similarity=0.839  Sum_probs=79.0

Q ss_pred             CCCCChhhHHHHhhhchHHHHHHHHHHHHc-ccchhhhHHHHHHHhhh---chhHHHHHHhCChhhhHHHHhhchhHHHH
Q psy16066          1 MFLNRPHYLNAIQTMCPHILRYLATAVIIN-RSKRNALKDLVKVIQQV---SRDLIIDMFLNRPHYLNAIQTMCPHILRY   76 (182)
Q Consensus         1 ~fl~~~~ylnaiQt~~p~lLRYl~~avi~~-~~r~~~lkdlVrvIqqE---grd~i~d~Fl~~~~Yln~IQt~cPhlLRY   76 (182)
                      |||++|.|||||||+|||||||||+|||+| +|||+.|||||||||||   .+|||+| |+                   
T Consensus       236 ~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkVIqqE~ysYkDPite-Fl-------------------  295 (432)
T KOG2758|consen  236 MFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKVIQQESYSYKDPITE-FL-------------------  295 (432)
T ss_pred             HHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHHHHHhccccCCcHHH-HH-------------------
Confidence            689999999999999999999999999999 57789999999999999   4889999 88                   


Q ss_pred             HHHHHHhh---hchhHHHHHHHHHHhhccccCCCcH-HHHHH
Q psy16066         77 LATAVIIN---RSKRNALKDLVKVIQQESYTYKDPI-TEFLE  114 (182)
Q Consensus        77 la~AvI~n---r~rr~~lkdlv~vI~qe~y~Y~DPi-TeFl~  114 (182)
                        +|+.+|   .+.|..|++|..|+.++.|.  -|+ .+|+|
T Consensus       296 --~clyvn~DFdgAq~kl~eCeeVl~nDfFL--va~l~~F~E  333 (432)
T KOG2758|consen  296 --ECLYVNYDFDGAQKKLRECEEVLVNDFFL--VALLDEFLE  333 (432)
T ss_pred             --HHHhhccchHHHHHHHHHHHHHHhcchhH--HHHHHHHHH
Confidence              799998   58899999999999876554  233 55654

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=97.14  E-value=0.0017  Score=46.38  Aligned_cols=70  Identities=24%  Similarity=0.319  Sum_probs=59.8

Q ss_pred             cHHHHHHHHhhccchHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066        108 PITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVID  178 (182)
Q Consensus       108 PiTeFl~~L~v~fDFe~Aq~~L~~~e~v~~~DfFL~~~~~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~  178 (182)
                      |+.++++++ ..-|+.+..+.+.+.++-+..|-++..+.+.+.+..+...+-.+++.+++|+++.+|+.++
T Consensus         2 ~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~   71 (105)
T PF01399_consen    2 PYSELLRAF-RSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQ   71 (105)
T ss_dssp             HHHHHHHHH-HCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHT
T ss_pred             HHHHHHHHH-HhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhc
Confidence            567777655 6778999999999996677778888889999999999999999999999999999999885

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=91.47  E-value=0.3  Score=34.58  Aligned_cols=34  Identities=12%  Similarity=0.201  Sum_probs=31.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066        145 CLDEFVENARLMIFETFCRIHQCISIQKESNVID  178 (182)
Q Consensus       145 ~~~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~  178 (182)
                      +.+.+.++.|...+..||+.|++|++++||+.++
T Consensus         2 ~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~   35 (88)
T smart00088        2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLG   35 (88)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhC
Confidence            4678999999999999999999999999998875

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>smart00753 PAM PCI/PINT associated module

Probab=91.47  E-value=0.3  Score=34.58  Aligned_cols=34  Identities=12%  Similarity=0.201  Sum_probs=31.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066        145 CLDEFVENARLMIFETFCRIHQCISIQKESNVID  178 (182)
Q Consensus       145 ~~~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~  178 (182)
                      +.+.+.++.|...+..||+.|++|++++||+.++
T Consensus         2 ~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~   35 (88)
T smart00753        2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLG   35 (88)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhC
Confidence            4678999999999999999999999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	98.57
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.47
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.1

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.57  E-value=8.2e-08  Score=85.29  Aligned_cols=126  Identities=13%  Similarity=0.121  Sum_probs=95.0

Q ss_pred             hHHHHHHhCChhhhHHHHhhchhHHHHHHHHHHhhhchhHHHHHHHHHHhhccccCC----CcHHHHHHHHhhccchHHH
Q psy16066         50 DLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYK----DPITEFLEHLYVSFDFESA  125 (182)
Q Consensus        50 d~i~d~Fl~~~~Yln~IQt~cPhlLRYla~AvI~nr~rr~~lkdlv~vI~qe~y~Y~----DPiTeFl~~L~v~fDFe~A  125 (182)
                      ..++|.|. ++.+.+.++..++  +.|.+.+.++.-.|.+....++.-..-..+...    +|+++++.++|....++..
T Consensus       229 ~~f~e~~~-t~~~~e~~~~~~~--~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~  305 (429)
T 4b4t_R          229 KLLVDSLA-TFTSIELTSYESI--ATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYF  305 (429)
T ss_dssp             HHHHHHHH-HSCCSCHHHHHHH--HHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhc-cCCccchhhHHHH--HHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHH
Confidence            35556554 4555566655544  556666666555554444433332222233333    4578999999999999999


Q ss_pred             HHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066        126 REKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVID  178 (182)
Q Consensus       126 q~~L~~~e~v~~~DfFL~~~~~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~  178 (182)
                      +..+...+..+..|.||.++.+.+.++.|...+..||+.|++|+++.||+.||
T Consensus       306 ~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~  358 (429)
T 4b4t_R          306 PYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFG  358 (429)
T ss_dssp             HHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHT
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999987

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.47  E-value=0.00059  Score=61.22  Aligned_cols=153  Identities=14%  Similarity=0.188  Sum_probs=98.6

Q ss_pred             hchHHHHHHHHHHHHc------ccchhhhHHHHHHHhh-hc------hhHHHHHHhCChhhhHHHHhhchhHHHHHHHHH
Q psy16066         15 MCPHILRYLATAVIIN------RSKRNALKDLVKVIQQ-VS------RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAV   81 (182)
Q Consensus        15 ~~p~lLRYl~~avi~~------~~r~~~lkdlVrvIqq-Eg------rd~i~d~Fl~~~~Yln~IQt~cPhlLRYla~Av   81 (182)
                      +-|++=.+++.|-=+.      .+.+..++.--.+.|- +.      ...+.|.|   ++|-++.-...--.++|++.|.
T Consensus       154 n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf---~~f~~~~~~~~~~~lkYlvL~a  230 (394)
T 3txn_A          154 NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF---EGFDSVDSVKALTSLKYMLLCK  230 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH---HHHTTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH---hcccccccHHHHHHHHHHHHHH
Confidence            4456555555442111      1235556666556665 32      22344433   2343322222236899999999


Q ss_pred             HhhhchhHHHHHHHHHHhhc-cccCCCcHHHHHHHH---hhccchHHHHHHHHHHHhhhhcccchhhhHH----HHHHHH
Q psy16066         82 IINRSKRNALKDLVKVIQQE-SYTYKDPITEFLEHL---YVSFDFESAREKLTECTEVLDNDFFLVACLD----EFVENA  153 (182)
Q Consensus        82 I~nr~rr~~lkdlv~vI~qe-~y~Y~DPiTeFl~~L---~v~fDFe~Aq~~L~~~e~v~~~DfFL~~~~~----~f~e~A  153 (182)
                      +++..|.+ ++   .++.++ ...|.+|-.+.+..|   |.+-|+.+..+.|.+.+..+..|.||..+.+    .+.+.|
T Consensus       231 Ll~~~r~e-l~---~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~  306 (394)
T 3txn_A          231 IMLGQSDD-VN---QLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQN  306 (394)
T ss_dssp             HHTTCGGG-HH---HHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHH-HH---HHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            98876533 23   345555 356789987775554   7778999999999999999999999976644    555666


Q ss_pred             HHHHHHHhhhhcccccHHHHHhHhh
Q psy16066        154 RLMIFETFCRIHQCISIQKESNVID  178 (182)
Q Consensus       154 R~lIfEtYCrIH~~I~I~~la~~L~  178 (182)
                      -.-+++.|    ++|+++.+|+.+|
T Consensus       307 L~~i~~pY----srIsl~~iA~~l~  327 (394)
T 3txn_A          307 LCRIIEPY----SRVQVAHVAESIQ  327 (394)
T ss_dssp             HHHHHTTC----SEEEHHHHHHHHT
T ss_pred             HHHHhHhh----ceeeHHHHHHHHC
Confidence            66666665    8899999999987

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.0019  Score=53.18  Aligned_cols=107  Identities=12%  Similarity=0.139  Sum_probs=81.5

Q ss_pred             hchhHHHHHHHHHHhhhchhHHHHHHHHHHhhcccc-CCCcH---HHHHHHHhhccchHHHHHHHHHHHhhhhcccchhh
Q psy16066         69 MCPHILRYLATAVIINRSKRNALKDLVKVIQQESYT-YKDPI---TEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVA  144 (182)
Q Consensus        69 ~cPhlLRYla~AvI~nr~rr~~lkdlv~vI~qe~y~-Y~DPi---TeFl~~L~v~fDFe~Aq~~L~~~e~v~~~DfFL~~  144 (182)
                      .+.+.+.|.+.+.+...........+.   .++... +.+|-   ...+...|.+.++...++.+......+..|.|+..
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  333 (434)
T 4b4t_Q          257 KACQVLKYMLLSKIMLNLIDDVKNILN---AKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRS  333 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHH---CSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHhHHH---HHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHH
Confidence            455677788777777654433222211   122222 23443   44455668899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066        145 CLDEFVENARLMIFETFCRIHQCISIQKESNVID  178 (182)
Q Consensus       145 ~~~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~  178 (182)
                      +.+.+..+.+.-....+++-|++|+++.+|+.||
T Consensus       334 ~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~  367 (434)
T 4b4t_Q          334 HFNALYDTLLESNLCKIIEPFECVEISHISKIIG  367 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhC
Confidence            9999999999999999999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00