Psyllid ID: psy16125

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MNPGGDVLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCISRPSPAA
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHcccccEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcccccEEEccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHcEEEcccEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mnpggdvleninptlyskcedrpvtaedqndyitdefdsREIFDLIRniydpehpltleELHVVDLSLIQvnnetnqikvnftptiphcsmATLIGLSIRVRLIRALPARFKVVVeitpgshsteFAINKQLADKERVAAALENSTLIGVINqcisrpspaa
Flexible Loop (DISEMBL)
MNPGGDVLENINptlyskcedrpvtaedqndyitdefdsREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVveitpgshstefAINKQLADKERVAAALENStligvinqcisrpspaa
Low Complexity Region (SEG)
MNPGGDVLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCISRPSPAA
Disordered region (IsUnstruct)
**************LY*************NDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCI*******
Disordered Region (DISOPRED)
****GDV*ENINPTLY****************ITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCISRP****
Disordered Region (DISEMBL)
MNPGGDVLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCISRPSPAA
Disordered Region (DISPRO)
*****DVLENINPTLYSKC**************TDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCISRP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPGGDVLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCISRPSPAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9VTC4	156	MIP18 family protein CG79	yes	N/A	0.919	0.955	0.671	3e-55
Q9Y3D0	163	Mitotic spindle-associate	yes	N/A	0.925	0.920	0.626	1e-51
Q9D187	163	Mitotic spindle-associate	yes	N/A	0.925	0.920	0.633	1e-51
O62252	160	MIP18 family protein F45G	yes	N/A	0.956	0.968	0.601	1e-46
Q54QK1	163	MIP18 family protein FAM9	yes	N/A	0.919	0.914	0.5	9e-39
Q9C9G6	157	MIP18 family protein At1g	yes	N/A	0.901	0.929	0.530	2e-38
P38829	231	MIP18 family protein YHR1	yes	N/A	0.876	0.614	0.476	2e-32
Q9SR25	149	MIP18 family protein At3g	no	N/A	0.876	0.953	0.486	5e-31
Q9UTL0	179	MIP18 family protein C144	yes	N/A	0.728	0.659	0.586	6e-31
Q9H5X1	160	MIP18 family protein FAM9	no	N/A	0.759	0.768	0.531	2e-30

>sp|Q9VTC4|U195A_DROME MIP18 family protein CG7949 OS=Drosophila melanogaster GN=CG7949 PE=1 SV=1

 Score =  213 bits (543), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 126/149 (84%)

Query: 8   LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
           +ENINP +Y + ++R +TA ++++ + D FD REIFDLIRNI DPEHPLTLEELHVV   
Sbjct: 5   IENINPNVYDRIKERVLTANEEDENVPDPFDKREIFDLIRNINDPEHPLTLEELHVVQED 64

Query: 68  LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
           LI++N+  N + ++FTPTIPHCSMATLIGLSIRV+L+R+LP RFKV VEITPG+H++E A
Sbjct: 65  LIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKVTVEITPGTHASELA 124

Query: 128 INKQLADKERVAAALENSTLIGVINQCIS 156
           +NKQLADKERVAAALEN+ L  VINQCI+
Sbjct: 125 VNKQLADKERVAAALENNHLAEVINQCIA 153

May play a role in chromosome segregation through establishment of sister chromatid cohesion.
Drosophila melanogaster (taxid: 7227)

>sp|Q9Y3D0|MIP18_HUMAN Mitotic spindle-associated MMXD complex subunit MIP18 OS=Homo sapiens GN=FAM96B PE=1 SV=1

 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 125/150 (83%)

Query: 7   VLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDL 66
           +LEN NP +Y +  +RPVTA ++++ + D  D+REIFDLIR+I DPEHPLTLEEL+VV+ 
Sbjct: 11  LLENANPLIYQRSGERPVTAGEEDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQ 70

Query: 67  SLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEF 126
             +QV++  + + V FTPTIPHCSMATLIGLSI+V+L+R+LP RFK+ V ITPG+H++E 
Sbjct: 71  VRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEH 130

Query: 127 AINKQLADKERVAAALENSTLIGVINQCIS 156
           A+NKQLADKERVAAALEN+ L+ V+NQC+S
Sbjct: 131 AVNKQLADKERVAAALENTHLLEVVNQCLS 160

As part of the mitotic spindle-associated MMXD complex it plays a role in chromosome segregation.

Homo sapiens (taxid: 9606)

>sp|Q9D187|MIP18_MOUSE Mitotic spindle-associated MMXD complex subunit MIP18 OS=Mus musculus GN=Fam96b PE=2 SV=1

 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/150 (63%), Positives = 125/150 (83%)

Query: 7   VLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDL 66
           +LEN NP +Y +  +RPVTA ++++ + D  D+REIFDLIR+I DPEHPLTLEEL+VV+ 
Sbjct: 11  LLENANPLIYERSGERPVTAGEEDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQ 70

Query: 67  SLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEF 126
             IQV++  + + V FTPTIPHCSMATLIGLSI+V+L+R+LP RFK+ V ITPG+H++E 
Sbjct: 71  VRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEH 130

Query: 127 AINKQLADKERVAAALENSTLIGVINQCIS 156
           A+NKQLADKERVAAALEN+ L+ V+NQC+S
Sbjct: 131 AVNKQLADKERVAAALENTHLLEVVNQCLS 160

As part of the mitotic spindle-associated MMXD complex it plays a role in chromosome segregation.

Mus musculus (taxid: 10090)

>sp|O62252|U195_CAEEL MIP18 family protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10 PE=1 SV=1

 Score =  185 bits (469), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 121/158 (76%), Gaps = 3/158 (1%)

Query: 4   GGDVLENINPTLY-SKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELH 62
           G + L+N NPTL+ SK   RPVT  ++++ + D  DS EIFDLIR+I DPEHP TLE+L+
Sbjct: 2   GQERLDNANPTLFDSKPRHRPVTGTERDESVEDPIDSWEIFDLIRDINDPEHPYTLEQLN 61

Query: 63  VVDLSLIQV--NNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPG 120
           VV   LI+V  + E   +KVNFTPTIPHCSMATLIGL+IRV+L+R+L  + KV V ITPG
Sbjct: 62  VVQEELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKVSVSITPG 121

Query: 121 SHSTEFAINKQLADKERVAAALENSTLIGVINQCISRP 158
           SHSTE +IN+QLADKERVAAA+EN  L+  +N+C+  P
Sbjct: 122 SHSTEESINRQLADKERVAAAMENQGLMHAVNECLRVP 159

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54QK1|FA96B_DICDI MIP18 family protein FAM96B OS=Dictyostelium discoideum GN=fam96B PE=3 SV=2

 Score =  159 bits (401), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 116/160 (72%), Gaps = 11/160 (6%)

Query: 9   ENINPTLYSKCEDRPVTAEDQNDYIT----------DEFDSREIFDLIRNIYDPEHPLTL 58
           +N NP +Y   E+     +++N + +          DEFD +EIFDL+R+I DPEHPLTL
Sbjct: 3   DNPNPVIYVDNENCKSFEDNENSFNSSRYSIEEDQIDEFDEQEIFDLVRSITDPEHPLTL 62

Query: 59  EELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118
           E+L+VV +  + +N E + I + FTPT+PHCSMA LIGLSI+ +L R+LP RFKV V +T
Sbjct: 63  EQLNVVRIENVNINLENSYILLYFTPTVPHCSMANLIGLSIKEKLARSLPKRFKVDVIVT 122

Query: 119 PGSHSTEFAINKQLADKERVAAALE-NSTLIGVINQCISR 157
           PGSHS+E ++NKQL DKERV+AAL+ +S+++ ++N+CI +
Sbjct: 123 PGSHSSESSVNKQLNDKERVSAALDTSSSILTIVNECIKQ 162

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9C9G6|U195A_ARATH MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/147 (53%), Positives = 108/147 (73%), Gaps = 1/147 (0%)

Query: 10  NINPTLYSKCEDRPVTAEDQNDYITDE-FDSREIFDLIRNIYDPEHPLTLEELHVVDLSL 68
           N NP +Y K E R  T     D +T E  D  EIFD IR+I DPEHP TLE+L VV    
Sbjct: 7   NENPIIYPKKERRLRTDTSITDELTPEPIDQLEIFDHIRDIKDPEHPNTLEDLRVVTEDS 66

Query: 69  IQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAI 128
           ++V++E + ++V FTPT+ HCSMAT+IGL +RV+L+R+LP+R+K+ + + PGSH+TE A+
Sbjct: 67  VEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKIDIRVAPGSHATEDAL 126

Query: 129 NKQLADKERVAAALENSTLIGVINQCI 155
           NKQL DKERVAAALEN  L+ ++++C+
Sbjct: 127 NKQLNDKERVAAALENPNLVEMVDECL 153

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Arabidopsis thaliana (taxid: 3702)

>sp|P38829|YHS2_YEAST MIP18 family protein YHR122W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR122W PE=1 SV=1

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 5/147 (3%)

Query: 14  TLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNN 73
           +L ++ ED  V    + +   D  D++EI+DLI +I DPEHPL+L +L VV+L  I V++
Sbjct: 81  SLPAESEDESVAGGGKEEEEPDLIDAQEIYDLIAHISDPEHPLSLGQLSVVNLEDIDVHD 140

Query: 74  ETNQ-----IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAI 128
             NQ     + +  TPTI HCS+ATLIGL IRVRL R+LP RF++ + +  G+H +E  +
Sbjct: 141 SGNQNEMAEVVIKITPTITHCSLATLIGLGIRVRLERSLPPRFRITILLKKGTHDSENQV 200

Query: 129 NKQLADKERVAAALENSTLIGVINQCI 155
           NKQL DKERVAAA EN  L+GV+++ +
Sbjct: 201 NKQLNDKERVAAACENEQLLGVVSKML 227

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9SR25|U195B_ARATH MIP18 family protein At3g09380 OS=Arabidopsis thaliana GN=At3g09380 PE=2 SV=2

 Score =  133 bits (334), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/150 (48%), Positives = 102/150 (68%), Gaps = 8/150 (5%)

Query: 7   VLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHP-LTLEELHVVD 65
           VL N NP +Y K   R  T  DQ+   TDEF S    + IR+I DPEHP L+LE+L+V+ 
Sbjct: 4   VLTNKNPIIYPKRTRRYRT--DQSS--TDEFSS---TNRIRDIKDPEHPELSLEDLNVLT 56

Query: 66  LSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTE 125
              ++V++  + +++ FTPT+PHC + T IGL I V+L+++LPARFKV V + PGSH  E
Sbjct: 57  EESVEVDDHKSYVRITFTPTLPHCHLPTHIGLCILVKLVQSLPARFKVDVRVAPGSHDKE 116

Query: 126 FAINKQLADKERVAAALENSTLIGVINQCI 155
             +NKQL DKERV AALEN  L+ ++N+ +
Sbjct: 117 TTVNKQLGDKERVTAALENPELVALLNKMM 146

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UTL0|YIVG_SCHPO MIP18 family protein C144.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC144.16 PE=3 SV=1

 Score =  133 bits (334), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 86/121 (71%), Gaps = 3/121 (2%)

Query: 35  DEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQV--NNETNQ-IKVNFTPTIPHCSM 91
           D  D +EI+DL+  I DPEHPLTL +L VV L  I+V  N E +  I V+ TPTIPHCSM
Sbjct: 52  DPIDPQEIYDLLAKINDPEHPLTLAQLSVVKLEDIEVVDNVEGDSYITVHITPTIPHCSM 111

Query: 92  ATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVI 151
            TLIGL IRVRL R LP RF V V++  G+H++E  +NKQL DKERVAAA EN  L+ V+
Sbjct: 112 CTLIGLCIRVRLERCLPPRFHVDVKVKKGTHASESQVNKQLNDKERVAAACENEQLLSVL 171

Query: 152 N 152
           N
Sbjct: 172 N 172

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9H5X1|FA96A_HUMAN MIP18 family protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 88/126 (69%), Gaps = 3/126 (2%)

Query: 36  EFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQV---NNETNQIKVNFTPTIPHCSMA 92
           E  + E++DLIR I DPE P TLEEL VV  S ++V   N E   + + FTPT+PHCS+A
Sbjct: 34  EEKALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLA 93

Query: 93  TLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVIN 152
           TLIGL +RV+L R LP + K+ + I+ G+HSTE  INKQ+ DKERVAAA+EN  L  ++ 
Sbjct: 94  TLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVE 153

Query: 153 QCISRP 158
           QC+  P
Sbjct: 154 QCVLEP 159

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
322800612	156	hypothetical protein SINV_01457 [Solenop	0.919	0.955	0.751	9e-61
157114185	156	hypothetical protein AaeL_AAEL006731 [Ae	0.932	0.967	0.748	6e-59
332030382	156	UPF0195 protein [Acromyrmex echinatior]	0.919	0.955	0.711	6e-58
91080067	159	PREDICTED: similar to GA20712-PA [Tribol	0.919	0.937	0.751	1e-57
307178297	156	UPF0195 protein CG7949 [Camponotus flori	0.919	0.955	0.711	3e-57
195127179	156	GI13290 [Drosophila mojavensis] gi|19391	0.919	0.955	0.704	6e-57
170052229	156	FAM96B [Culex quinquefasciatus] gi|16787	0.932	0.967	0.728	8e-57
307196483	156	UPF0195 protein CG7949 [Harpegnathos sal	0.913	0.948	0.695	5e-56
118786443	156	AGAP005422-PA [Anopheles gambiae str. PE	0.932	0.967	0.695	7e-56
195021534	156	GH14512 [Drosophila grimshawi] gi|195069	0.919	0.955	0.691	9e-56

>gi|322800612|gb|EFZ21581.1| hypothetical protein SINV_01457 [Solenopsis invicta]

 Score =  238 bits (606), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 134/149 (89%)

Query: 8   LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
           LENINP LY K +DR VTAE+Q+D + DEFDSREIFD+IRNI DPEHPLTLEEL+VV+ +
Sbjct: 5   LENINPKLYKKLDDREVTAEEQDDDVADEFDSREIFDIIRNINDPEHPLTLEELNVVEQN 64

Query: 68  LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
           LI+V+N+ N++ V FTPTIPHCSMATLIGLSIRV+L+RALPARFKV VEI+PG+H +E A
Sbjct: 65  LIEVDNKKNKVDVKFTPTIPHCSMATLIGLSIRVQLLRALPARFKVSVEISPGTHVSEAA 124

Query: 128 INKQLADKERVAAALENSTLIGVINQCIS 156
           +NKQLADKERVAAALENS L+GVINQC++
Sbjct: 125 VNKQLADKERVAAALENSMLLGVINQCLA 153

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114185|ref|XP_001652201.1| hypothetical protein AaeL_AAEL006731 [Aedes aegypti] gi|157114187|ref|XP_001652202.1| hypothetical protein AaeL_AAEL006731 [Aedes aegypti] gi|108877435|gb|EAT41660.1| AAEL006731-PA [Aedes aegypti] gi|108877436|gb|EAT41661.1| AAEL006731-PB [Aedes aegypti]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 130/151 (86%)

Query: 8   LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
           LENINP +Y KCE+R +T +D+ND + D FD REIFDLIRNI DPEHPLTLEELHV++ S
Sbjct: 4   LENINPHVYRKCEERRLTKDDENDDVADPFDEREIFDLIRNINDPEHPLTLEELHVLEQS 63

Query: 68  LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
           LI V+NE N +KV FTPTIPHCSMATLIGLSIRV+L+RALP RFKV VEI PG+H++E A
Sbjct: 64  LITVDNEKNTVKVLFTPTIPHCSMATLIGLSIRVKLLRALPPRFKVSVEINPGTHASENA 123

Query: 128 INKQLADKERVAAALENSTLIGVINQCISRP 158
           +NKQLADKERVAAALENS LI VINQCI+ P
Sbjct: 124 VNKQLADKERVAAALENSHLIEVINQCIAVP 154

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030382|gb|EGI70089.1| UPF0195 protein [Acromyrmex echinatior]

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 133/149 (89%)

Query: 8   LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
           LENINP LY K +DR +T E+Q++ + DEFD+REIFD+IRNI DPEHPLTLEEL+VV+ +
Sbjct: 5   LENINPKLYKKLDDREITVEEQDEDVADEFDAREIFDIIRNINDPEHPLTLEELNVVEQN 64

Query: 68  LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
           LI+V+++ N++ V FTPTIPHCSMATLIGLSIRV+L+RALP+RFKV VEI+PG+H +E A
Sbjct: 65  LIEVDDKRNRVDVKFTPTIPHCSMATLIGLSIRVQLLRALPSRFKVSVEISPGTHVSEAA 124

Query: 128 INKQLADKERVAAALENSTLIGVINQCIS 156
           +NKQLADKERVAAALENS L+GVINQC++
Sbjct: 125 VNKQLADKERVAAALENSMLLGVINQCLA 153

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080067|ref|XP_967071.1| PREDICTED: similar to GA20712-PA [Tribolium castaneum] gi|270004642|gb|EFA01090.1| hypothetical protein TcasGA2_TC004013 [Tribolium castaneum]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 127/149 (85%)

Query: 8   LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
           LEN NP +Y+K  DR +TAE++ND + DEFDSREIFDLIRNI DPEHPLTLE+LHVV  S
Sbjct: 6   LENQNPNVYNKTTDRLITAEEENDDVVDEFDSREIFDLIRNITDPEHPLTLEQLHVVQES 65

Query: 68  LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
           LIQV+N  N I VNFTPTIPHCSMATLIGLSIRV+L+R LPARFKV VE+T G+H+ E +
Sbjct: 66  LIQVDNANNSIFVNFTPTIPHCSMATLIGLSIRVKLLRCLPARFKVRVEVTKGTHNAENS 125

Query: 128 INKQLADKERVAAALENSTLIGVINQCIS 156
           +NKQLADKERVAAALEN  LI VINQCIS
Sbjct: 126 VNKQLADKERVAAALENPHLIQVINQCIS 154

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178297|gb|EFN67069.1| UPF0195 protein CG7949 [Camponotus floridanus]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 132/149 (88%)

Query: 8   LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
           LENINP LY +  DR +TAE+Q++ + DEFD+REIFD+IRNI DPEHPLTLEEL+VV+ S
Sbjct: 5   LENINPKLYKRLNDREITAEEQDEDVADEFDAREIFDIIRNINDPEHPLTLEELNVVEQS 64

Query: 68  LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
           LI+V+++ N++ V FTPTIPHCSMATLIGLSIRV+L+RALPARFKV V+I+PG+H +E A
Sbjct: 65  LIEVDDKGNKVDVKFTPTIPHCSMATLIGLSIRVQLLRALPARFKVSVKISPGTHVSEEA 124

Query: 128 INKQLADKERVAAALENSTLIGVINQCIS 156
           +NKQLADKERVAAALENS L+ VINQC++
Sbjct: 125 VNKQLADKERVAAALENSMLLNVINQCLA 153

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127179|ref|XP_002008046.1| GI13290 [Drosophila mojavensis] gi|193919655|gb|EDW18522.1| GI13290 [Drosophila mojavensis]

 Score =  225 bits (573), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 105/149 (70%), Positives = 127/149 (85%)

Query: 8   LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
           +ENINP++Y K ++R +TA ++ND + D FD REIFDLIRNI DPEHPLTLEELHVV   
Sbjct: 5   IENINPSVYGKIKERLITANEENDSVADPFDKREIFDLIRNINDPEHPLTLEELHVVQEE 64

Query: 68  LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
           LI ++++ N + +NFTPTIPHCSMATLIGLSIRV+L+R+LP RFKV VEITPG+H++EFA
Sbjct: 65  LISISDKQNSVHINFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKVTVEITPGTHASEFA 124

Query: 128 INKQLADKERVAAALENSTLIGVINQCIS 156
           +NKQLADKERVAAALEN  L  VINQCIS
Sbjct: 125 VNKQLADKERVAAALENKHLAEVINQCIS 153

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052229|ref|XP_001862126.1| FAM96B [Culex quinquefasciatus] gi|167873151|gb|EDS36534.1| FAM96B [Culex quinquefasciatus]

 Score =  224 bits (572), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 110/151 (72%), Positives = 127/151 (84%)

Query: 8   LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
           LENINP +Y + E+R  T  D+ND + D FD REIFDLIRNI DPEHPLTLEELHV++ S
Sbjct: 4   LENINPNVYKRSEERKYTENDENDDVVDPFDEREIFDLIRNINDPEHPLTLEELHVLEQS 63

Query: 68  LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
           LI V+NE N +KV FTPTIPHCSMATLIGLSIRV+L+RALP RFKV VEI PG+H++E A
Sbjct: 64  LITVDNEKNFVKVLFTPTIPHCSMATLIGLSIRVKLLRALPPRFKVSVEINPGTHASENA 123

Query: 128 INKQLADKERVAAALENSTLIGVINQCISRP 158
           +NKQLADKERVAAALEN+ LI VINQCI+ P
Sbjct: 124 VNKQLADKERVAAALENTHLIEVINQCIAVP 154

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196483|gb|EFN78035.1| UPF0195 protein CG7949 [Harpegnathos saltator]

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 103/148 (69%), Positives = 128/148 (86%)

Query: 8   LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
           LENINP LY K ++R +T E+Q++   DEFD+RE+FDLIRNI DPEHPLTLEEL+VV+ S
Sbjct: 5   LENINPKLYKKLDERKITFEEQDEDTVDEFDAREVFDLIRNINDPEHPLTLEELNVVEQS 64

Query: 68  LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
           LIQV+N+ N + V FTPTIPHCSMATLIGLSIRV+L+R LP RFKV VEI+PG+H +E +
Sbjct: 65  LIQVDNKKNTVDVKFTPTIPHCSMATLIGLSIRVQLLRTLPVRFKVSVEISPGTHVSEAS 124

Query: 128 INKQLADKERVAAALENSTLIGVINQCI 155
           +NKQLADKERVAAA+ENS L+G++NQC+
Sbjct: 125 LNKQLADKERVAAAIENSMLLGLLNQCL 152

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118786443|ref|XP_315430.3| AGAP005422-PA [Anopheles gambiae str. PEST] gi|116126324|gb|EAA11936.3| AGAP005422-PA [Anopheles gambiae str. PEST]

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 126/151 (83%)

Query: 8   LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
           LEN+NP +Y K EDR +T ED+++ + D FD REIFD+IRNI DPEHPLTLEELHV++ S
Sbjct: 4   LENVNPNVYKKSEDRKLTKEDEDEDVVDPFDEREIFDIIRNINDPEHPLTLEELHVLEQS 63

Query: 68  LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
           LI V+NE N + + FTPTIPHCSMATLIGLSIRV+L+RALP RFKV VEI PG+H++E A
Sbjct: 64  LITVDNEKNIVNILFTPTIPHCSMATLIGLSIRVKLLRALPPRFKVSVEINPGTHASEHA 123

Query: 128 INKQLADKERVAAALENSTLIGVINQCISRP 158
           +NKQL DKERVAAALEN+ L+ VINQCI  P
Sbjct: 124 VNKQLTDKERVAAALENTHLMEVINQCIGTP 154

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195021534|ref|XP_001985413.1| GH14512 [Drosophila grimshawi] gi|195069811|ref|XP_001997035.1| GH23231 [Drosophila grimshawi] gi|193898895|gb|EDV97761.1| GH14512 [Drosophila grimshawi] gi|193906227|gb|EDW05094.1| GH23231 [Drosophila grimshawi]

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 103/149 (69%), Positives = 127/149 (85%)

Query: 8   LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
           +EN+NP++Y K ++R +TA+D+++ I D FD REIFDLIRNI DPEHPL+LEELHVV   
Sbjct: 5   IENLNPSVYGKIKERQITAKDEDESIVDPFDKREIFDLIRNINDPEHPLSLEELHVVQEE 64

Query: 68  LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
           LI V+++ N + +NFTPTIPHCSMATLIGLSIRV+L+R+LP RFKV VEITPG+H++E A
Sbjct: 65  LINVSDKQNSVHINFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKVTVEITPGTHASELA 124

Query: 128 INKQLADKERVAAALENSTLIGVINQCIS 156
           +NKQLADKERVAAALEN  L  VINQCIS
Sbjct: 125 VNKQLADKERVAAALENQHLAEVINQCIS 153

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
FB|FBgn0036107	156	CG7949 [Drosophila melanogaste	0.919	0.955	0.671	4.4e-52
UNIPROTKB|E1BWV0	161	FAM96B "Uncharacterized protei	0.981	0.987	0.637	1.1e-50
UNIPROTKB|E1BC22	163	FAM96B "Uncharacterized protei	0.962	0.957	0.621	2e-49
UNIPROTKB|Q9Y3D0	163	FAM96B "Mitotic spindle-associ	0.962	0.957	0.621	2e-49
MGI|MGI:1915773	163	Fam96b "family with sequence s	0.962	0.957	0.628	2e-49
RGD|1585802	165	Fam96b "family with sequence s	0.962	0.945	0.628	2e-49
ZFIN|ZDB-GENE-040718-148	159	fam96b "family with sequence s	0.944	0.962	0.614	1.2e-47
UNIPROTKB|O62252	160	F45G2.10 "MIP18 family protein	0.956	0.968	0.601	3.9e-44
DICTYBASE|DDB_G0283801	163	fam96B "FAM96 family protein"	0.919	0.914	0.5	3.9e-37
TAIR|locus:2199362	159	AE7 "AS1/2 ENHANCER7" [Arabido	0.913	0.930	0.516	6.3e-37

FB|FBgn0036107 CG7949 [Drosophila melanogaster (taxid:7227)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 100/149 (67%), Positives = 126/149 (84%)

Query:     8 LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLS 67
             +ENINP +Y + ++R +TA ++++ + D FD REIFDLIRNI DPEHPLTLEELHVV   
Sbjct:     5 IENINPNVYDRIKERVLTANEEDENVPDPFDKREIFDLIRNINDPEHPLTLEELHVVQED 64

Query:    68 LIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA 127
             LI++N+  N + ++FTPTIPHCSMATLIGLSIRV+L+R+LP RFKV VEITPG+H++E A
Sbjct:    65 LIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKVTVEITPGTHASELA 124

Query:   128 INKQLADKERVAAALENSTLIGVINQCIS 156
             +NKQLADKERVAAALEN+ L  VINQCI+
Sbjct:   125 VNKQLADKERVAAALENNHLAEVINQCIA 153

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BWV0 FAM96B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 102/160 (63%), Positives = 129/160 (80%)

Query:     1 MNPGGDV-LENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLE 59
             + PGG V LEN NP +Y +  +RPVTA +++D + D  D REIFDLIR+I DPEHPLTLE
Sbjct:     2 VGPGGGVPLENANPLIYRRSGERPVTAREEDDELPDSIDDREIFDLIRSINDPEHPLTLE 61

Query:    60 ELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITP 119
             EL+VV+   ++VN+  + + V FTPTIPHCSMATLIGLSI+V+LIR+LP RFK+ V ITP
Sbjct:    62 ELNVVEQVRVKVNDAESTVAVEFTPTIPHCSMATLIGLSIKVKLIRSLPERFKMDVHITP 121

Query:   120 GSHSTEFAINKQLADKERVAAALENSTLIGVINQCISRPS 159
             G+H++E A+NKQLADKERVAAALENS L+ V+NQC+S  S
Sbjct:   122 GTHASEHAVNKQLADKERVAAALENSHLLEVVNQCLSARS 161

GO:0007059 "chromosome segregation" evidence=IEA

GO:0071817 "MMXD complex" evidence=IEA

GO:0097361 "CIA complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BC22 FAM96B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 97/156 (62%), Positives = 128/156 (82%)

Query:     4 GGDVLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHV 63
             GG +LEN NP +Y +  DRPV+A ++++ + D  D+REIFDLIR+I DPEHPLTLEEL+V
Sbjct:     8 GGGLLENANPLIYERSGDRPVSAGEEDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNV 67

Query:    64 VDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHS 123
             V+   +QV++  + + V FTPTIPHCSMATLIGLSI+V+L+R+LP RFK+ V ITPG+H+
Sbjct:    68 VEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHA 127

Query:   124 TEFAINKQLADKERVAAALENSTLIGVINQCISRPS 159
             +E A+NKQLADKERVAAALEN+ L+ V+NQC+S  S
Sbjct:   128 SEHAVNKQLADKERVAAALENTHLLEVVNQCLSARS 163

GO:0097361 "CIA complex" evidence=IEA

GO:0071817 "MMXD complex" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9Y3D0 FAM96B "Mitotic spindle-associated MMXD complex subunit MIP18" [Homo sapiens (taxid:9606)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 97/156 (62%), Positives = 128/156 (82%)

Query:     4 GGDVLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHV 63
             GG +LEN NP +Y +  +RPVTA ++++ + D  D+REIFDLIR+I DPEHPLTLEEL+V
Sbjct:     8 GGGLLENANPLIYQRSGERPVTAGEEDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNV 67

Query:    64 VDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHS 123
             V+   +QV++  + + V FTPTIPHCSMATLIGLSI+V+L+R+LP RFK+ V ITPG+H+
Sbjct:    68 VEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHA 127

Query:   124 TEFAINKQLADKERVAAALENSTLIGVINQCISRPS 159
             +E A+NKQLADKERVAAALEN+ L+ V+NQC+S  S
Sbjct:   128 SEHAVNKQLADKERVAAALENTHLLEVVNQCLSARS 163

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0071817 "MMXD complex" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0097361 "CIA complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1915773 Fam96b "family with sequence similarity 96, member B" [Mus musculus (taxid:10090)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 98/156 (62%), Positives = 128/156 (82%)

Query:     4 GGDVLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHV 63
             GG +LEN NP +Y +  +RPVTA ++++ + D  D+REIFDLIR+I DPEHPLTLEEL+V
Sbjct:     8 GGGLLENANPLIYERSGERPVTAGEEDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNV 67

Query:    64 VDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHS 123
             V+   IQV++  + + V FTPTIPHCSMATLIGLSI+V+L+R+LP RFK+ V ITPG+H+
Sbjct:    68 VEQVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHA 127

Query:   124 TEFAINKQLADKERVAAALENSTLIGVINQCISRPS 159
             +E A+NKQLADKERVAAALEN+ L+ V+NQC+S  S
Sbjct:   128 SEHAVNKQLADKERVAAALENTHLLEVVNQCLSARS 163

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005819 "spindle" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0071817 "MMXD complex" evidence=ISO

GO:0097361 "CIA complex" evidence=ISO

RGD|1585802 Fam96b "family with sequence similarity 96, member B" [Rattus norvegicus (taxid:10116)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 98/156 (62%), Positives = 128/156 (82%)

Query:     4 GGDVLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHV 63
             GG +LEN NP +Y +  +RPVTA ++++ + D  D+REIFDLIR+I DPEHPLTLEEL+V
Sbjct:    10 GGGLLENANPLIYERSGERPVTAGEEDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNV 69

Query:    64 VDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHS 123
             V+   IQV++  + + V FTPTIPHCSMATLIGLSI+V+L+R+LP RFK+ V ITPG+H+
Sbjct:    70 VEQVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHA 129

Query:   124 TEFAINKQLADKERVAAALENSTLIGVINQCISRPS 159
             +E A+NKQLADKERVAAALEN+ L+ V+NQC+S  S
Sbjct:   130 SEHAVNKQLADKERVAAALENTHLLEVVNQCLSARS 165

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005819 "spindle" evidence=ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0071817 "MMXD complex" evidence=IEA;ISO

GO:0097361 "CIA complex" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

ZFIN|ZDB-GENE-040718-148 fam96b "family with sequence similarity 96, member B" [Danio rerio (taxid:7955)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 94/153 (61%), Positives = 124/153 (81%)

Query:     4 GGDVLENINPTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHV 63
             GG  LEN NP ++ +  +R +T+ D+++ + D  D REIFDLIR+I DPEHPL+LEEL+V
Sbjct:     3 GGTRLENANPLIFQRSGERLLTSTDEDEDVADPIDVREIFDLIRSINDPEHPLSLEELNV 62

Query:    64 VDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHS 123
             V+   + VN+E + + V FTPTIPHCSMATLIGLSI+V+L+R+LP RFK+ V ITPG+H+
Sbjct:    63 VEQVRVNVNDEESTVSVEFTPTIPHCSMATLIGLSIKVKLLRSLPDRFKIDVHITPGTHA 122

Query:   124 TEFAINKQLADKERVAAALENSTLIGVINQCIS 156
             +E A+NKQLADKERVAAALENS L+ V+NQC+S
Sbjct:   123 SEDAVNKQLADKERVAAALENSQLLEVVNQCLS 155

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|O62252 F45G2.10 "MIP18 family protein F45G2.10" [Caenorhabditis elegans (taxid:6239)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 95/158 (60%), Positives = 121/158 (76%)

Query:     4 GGDVLENINPTLY-SKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELH 62
             G + L+N NPTL+ SK   RPVT  ++++ + D  DS EIFDLIR+I DPEHP TLE+L+
Sbjct:     2 GQERLDNANPTLFDSKPRHRPVTGTERDESVEDPIDSWEIFDLIRDINDPEHPYTLEQLN 61

Query:    63 VVDLSLIQV--NNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPG 120
             VV   LI+V  + E   +KVNFTPTIPHCSMATLIGL+IRV+L+R+L  + KV V ITPG
Sbjct:    62 VVQEELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKVSVSITPG 121

Query:   121 SHSTEFAINKQLADKERVAAALENSTLIGVINQCISRP 158
             SHSTE +IN+QLADKERVAAA+EN  L+  +N+C+  P
Sbjct:   122 SHSTEESINRQLADKERVAAAMENQGLMHAVNECLRVP 159

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0283801 fam96B "FAM96 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 80/160 (50%), Positives = 116/160 (72%)

Query:     9 ENINPTLYSKCEDRPVTAEDQNDYIT----------DEFDSREIFDLIRNIYDPEHPLTL 58
             +N NP +Y   E+     +++N + +          DEFD +EIFDL+R+I DPEHPLTL
Sbjct:     3 DNPNPVIYVDNENCKSFEDNENSFNSSRYSIEEDQIDEFDEQEIFDLVRSITDPEHPLTL 62

Query:    59 EELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118
             E+L+VV +  + +N E + I + FTPT+PHCSMA LIGLSI+ +L R+LP RFKV V +T
Sbjct:    63 EQLNVVRIENVNINLENSYILLYFTPTVPHCSMANLIGLSIKEKLARSLPKRFKVDVIVT 122

Query:   119 PGSHSTEFAINKQLADKERVAAALE-NSTLIGVINQCISR 157
             PGSHS+E ++NKQL DKERV+AAL+ +S+++ ++N+CI +
Sbjct:   123 PGSHSSESSVNKQLNDKERVSAALDTSSSILTIVNECIKQ 162

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0007059 "chromosome segregation" evidence=IEA

TAIR|locus:2199362 AE7 "AS1/2 ENHANCER7" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 78/151 (51%), Positives = 109/151 (72%)

Query:     8 LENINPTLYSKCEDRPVTAEDQNDYITDE-FDSREIFDLIR--NIYDPEHPLTLEELHVV 64
             L N NP +Y K E R  T     D +T E  D  EIFD++   NI DPEHP TLE+L VV
Sbjct:     5 LINENPIIYPKKERRLRTDTSITDELTPEPIDQLEIFDILSSSNIKDPEHPNTLEDLRVV 64

Query:    65 DLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHST 124
                 ++V++E + ++V FTPT+ HCSMAT+IGL +RV+L+R+LP+R+K+ + + PGSH+T
Sbjct:    65 TEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKIDIRVAPGSHAT 124

Query:   125 EFAINKQLADKERVAAALENSTLIGVINQCI 155
             E A+NKQL DKERVAAALEN  L+ ++++C+
Sbjct:   125 EDALNKQLNDKERVAAALENPNLVEMVDECL 155

GO:0005634 "nucleus" evidence=ISM

GO:0010209 "vacuolar sorting signal binding" evidence=IDA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P38829	YHS2_YEAST	No assigned EC number	0.4761	0.8765	0.6147	yes	N/A
Q9VTC4	U195A_DROME	No assigned EC number	0.6711	0.9197	0.9551	yes	N/A
Q9UTL0	YIVG_SCHPO	No assigned EC number	0.5867	0.7283	0.6592	yes	N/A
Q54QK1	FA96B_DICDI	No assigned EC number	0.5	0.9197	0.9141	yes	N/A
Q9Y3D0	MIP18_HUMAN	No assigned EC number	0.6266	0.9259	0.9202	yes	N/A
Q9C9G6	U195A_ARATH	No assigned EC number	0.5306	0.9012	0.9299	yes	N/A
O62252	U195_CAEEL	No assigned EC number	0.6012	0.9567	0.9687	yes	N/A
Q9D187	MIP18_MOUSE	No assigned EC number	0.6333	0.9259	0.9202	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
COG5133	181	COG5133, COG5133, Uncharacterized conserved protei	7e-45
COG2151	111	COG2151, PaaD, Predicted metal-sulfur cluster bios	1e-05
pfam01883	72	pfam01883, DUF59, Domain of unknown function DUF59	4e-04
TIGR03406	174	TIGR03406, FeS_long_SufT, probable FeS assembly SU	0.001

>gnl|CDD|227462 COG5133, COG5133, Uncharacterized conserved protein [Function unknown]

 Score =  145 bits (366), Expect = 7e-45
 Identities = 77/146 (52%), Positives = 93/146 (63%), Gaps = 7/146 (4%)

Query: 17  SKCEDRPVTAEDQN--DYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQV--- 71
           S  E  P+ +E+    +   D  D +EI+DLI +I DPEHPLTLE+L VV L  I V   
Sbjct: 32  SLEERHPIESENGVLQNEEPDLIDQQEIYDLIADIRDPEHPLTLEQLSVVSLEDISVPDG 91

Query: 72  --NNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAIN 129
              N    +KV  TPTIPHCSMATLIGL IRVRL R LP RF V V I  G+H +E  +N
Sbjct: 92  IAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRFHVQVHIKKGTHISERQVN 151

Query: 130 KQLADKERVAAALENSTLIGVINQCI 155
           KQL DKERVAAA EN  L+ V+ + +
Sbjct: 152 KQLNDKERVAAACENEQLLDVMEKML 177

Length = 181

>gnl|CDD|225062 COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 41  EIFDLIRNIYDPEHPLTLEELHVVDLSLI---QVNNETNQIKVNFTPTIPHCSMATLIGL 97
           +I + ++ + DPE  +      +VDL L+    +++    +KV  T T P C +A +I  
Sbjct: 16  DILEALKTVIDPEIGID-----IVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAEVIAD 70

Query: 98  SIRVRLIRALPARFKVVVEIT 118
            +    +  +P    V VE+T
Sbjct: 71  QVE-AALEEIPGVEDVEVELT 90

Length = 111

>gnl|CDD|216762 pfam01883, DUF59, Domain of unknown function DUF59

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 41  EIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIR 100
            +   ++ + DPE  + L  L +V    I +     +++ +   T P C     I  +  
Sbjct: 3   AVLAALKTVTDPETGVDLVSLGMV--RNITIEG--GKVRFDIELTYPACPQMEPIRKAAE 58

Query: 101 VRLIRALPARFKVVV 115
              +RALP    V V
Sbjct: 59  -AALRALPGVVSVSV 72

This family has an alpha/beta topology, with 13 conserved hydrophobic residues at its core and a putative active site containing a highly conserved cysteine. Members of this family are involved in a range of physiological functions. The family includes PaaJ (PhaH) from Pseudomonas putida. PaaJ forms a complex with PaaG (PhaF), PaaI (PhaG) and PaaK (PhaI), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid. It also includes PaaD from Escherichia coli, a member of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation. It is found near the N-terminus of the chloroplast scaffold protein HCF101, involved in the assembly of [4Fe-4S] clusters and their transfer to apoproteins. Length = 72

>gnl|CDD|213809 TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 23  PVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVV-DLSLIQVNNETNQIKVN 81
           P    D  +    E +  ++++ +R +YDPE P+ + +L +V    + ++     ++ + 
Sbjct: 59  PPPPLDLPENADGEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIE 118

Query: 82  FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEI 117
            T T P C M  ++   +    + A+P   +V VE+
Sbjct: 119 MTLTAPGCGMGPVLVEDVE-DKVLAVPNVDEVEVEL 153

The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfamam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG3381|consensus	161		99.96
COG2151	111	PaaD Predicted metal-sulfur cluster biosynthetic e	99.92
TIGR03406	174	FeS_long_SufT probable FeS assembly SUF system pro	99.86
COG5133	181	Uncharacterized conserved protein [Function unknow	99.82
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	99.76
TIGR02945	99	SUF_assoc FeS assembly SUF system protein. Members	99.74
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	99.71
PRK11670	369	antiporter inner membrane protein; Provisional	99.32
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	94.39
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	93.67
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	91.35
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	89.83
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	88.07

>KOG3381|consensus

Probab=99.96  E-value=7.1e-29  Score=191.77  Aligned_cols=153  Identities=57%  Similarity=0.917  Sum_probs=130.0

Q ss_pred             CCCcccCCceeeeccCC-CCCCcccCCCcCCCcCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeC---CC--CeE
Q psy16125          5 GDVLENINPTLYSKCED-RPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNN---ET--NQI   78 (162)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d---~~--~~V   78 (162)
                      |+.|+|+||++|.+... |..++-.-+.-..+..+.+.+++.++.|.|||.|.++-+|+.|+.-.|++.+   ++  ..|
T Consensus         1 ~s~l~N~np~v~~~~~~~~r~~~s~~d~~~~~~~~~~~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~V   80 (161)
T KOG3381|consen    1 GSGLQNENPLVYPTRSRERRVTASEEDELLPDSEDAEEIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESYV   80 (161)
T ss_pred             CCccccCCccccccccccccccccccccccCcchhHHHHHHHHhccCCCCCCccHHHccceeecceEeecCCCCCcceEE
Confidence            44599999999984333 3333222222333556788999999999999999999999999987775332   22  479


Q ss_pred             EEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccchHHHHhhhccC
Q psy16125         79 KVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCISR  157 (162)
Q Consensus        79 ~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~~~~~~~~~~~  157 (162)
                      +|.|++|.|+|+|+..|+..||-+|.+.||.-.+|+|.+..++|..+.+.|||++|||||+|||||..|+.+|++|+..
T Consensus        81 ~i~ftPTipHCSmaTlIGLcIrVkl~RsLp~rfkvdV~I~~GtH~tE~~vNKQLnDKERVaAA~EN~~L~~~v~~cl~~  159 (161)
T KOG3381|consen   81 RITFTPTIPHCSMATLIGLCIRVKLLRSLPPRFKVDVYIKPGTHATEEAVNKQLNDKERVAAALENPNLLEVVNKCLPA  159 (161)
T ss_pred             EEEeccCCCcchHHhhhhheeeeeeeecCCCceeEEEEEcCCCcCCHHHHHhhhccHHHHHHHhcChHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999864

>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]

Probab=99.92  E-value=3.2e-25  Score=164.96  Aligned_cols=95  Identities=23%  Similarity=0.346  Sum_probs=88.1

Q ss_pred             CCcCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeE
Q psy16125         34 TDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKV  113 (162)
Q Consensus        34 ~~~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V  113 (162)
                      ..+.++++|+++|++|+|||+|+|||+|||||++++  ++.++.++|.|++|+++||+...|..++++++ +.++|++++
T Consensus         9 ~~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i--~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al-~~~~~v~~v   85 (111)
T COG2151           9 AIKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDI--DDVDGLVKVKMTLTSPGCPLAEVIADQVEAAL-EEIPGVEDV   85 (111)
T ss_pred             hhhhhHHHHHHHhhcCCCcccceeeEeeccEEEEEE--ecCCceEEEEEecCCCCCCccHHHHHHHHHHH-HhcCCcceE
Confidence            345669999999999999999999999999999999  33256899999999999999999999999999 789999999


Q ss_pred             EEEEecCCCCCchhchhhcCCHH
Q psy16125        114 VVEITPGSHSTEFAINKQLADKE  136 (162)
Q Consensus       114 ~V~i~~~~h~~~~~w~~~l~~~E  136 (162)
                      +|+++     |.|+|+++++++|
T Consensus        86 ~V~l~-----~~p~Wt~~~ms~e  103 (111)
T COG2151          86 EVELT-----LSPPWTPDRMSEE  103 (111)
T ss_pred             EEEEE-----EcCCCchhhcCHH
Confidence            99999     9999999999987

>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT

Probab=99.86  E-value=4.4e-21  Score=152.71  Aligned_cols=99  Identities=19%  Similarity=0.401  Sum_probs=89.4

Q ss_pred             CCcCCCcCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeC-CCC--eEEEEEEeCCCCCchHHHHHHHHHHHHHHh
Q psy16125         30 NDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNN-ETN--QIKVNFTPTIPHCSMATLIGLSIRVRLIRA  106 (162)
Q Consensus        30 ~~~~~~~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d-~~~--~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~  106 (162)
                      ++...+..++++|+++|++|+||++++|||+||+|+++.+  ++ +++  +|+|.|+||+|+|++...|+.+++++| ++
T Consensus        66 ~~~~~~~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~I--d~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL-~~  142 (174)
T TIGR03406        66 PENADGEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRV--EKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKV-LA  142 (174)
T ss_pred             CcCccccccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEE--ecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHH-Hh
Confidence            3445566788999999999999999999999999999999  32 013  899999999999999999999999999 78


Q ss_pred             CCCceeEEEEEecCCCCCchhchhhcCCHH
Q psy16125        107 LPARFKVVVEITPGSHSTEFAINKQLADKE  136 (162)
Q Consensus       107 lpgv~~V~V~i~~~~h~~~~~w~~~l~~~E  136 (162)
                      ++|+.+|+|++.     |+|+|+++++|+|
T Consensus       143 l~gV~~V~V~l~-----~dp~W~~~~~s~~  167 (174)
T TIGR03406       143 VPNVDEVEVELV-----FDPPWSREMMSEA  167 (174)
T ss_pred             CCCceeEEEEEE-----ecCCCChHHCCHH
Confidence            999999999999     9999999999986

The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.

>COG5133 Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=4e-20  Score=142.99  Aligned_cols=126  Identities=57%  Similarity=0.833  Sum_probs=113.9

Q ss_pred             CcCCCcCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCC---C--CeEEEEEEeCCCCCchHHHHHHHHHHHHHH
Q psy16125         31 DYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNE---T--NQIKVNFTPTIPHCSMATLIGLSIRVRLIR  105 (162)
Q Consensus        31 ~~~~~~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~---~--~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~  105 (162)
                      .++.+.++.++|++.++.|.|||.|.++-.||.|.--+|.+.|+   +  ..|+|.+++|.|+|+|+..|...||-.|.+
T Consensus        48 ~ee~d~id~qeiydLia~I~DPEHPltL~QLsVV~lEdi~v~D~~~~n~i~~v~v~itPTIpHCSmatlIGLcIrvrleR  127 (181)
T COG5133          48 NEEPDLIDQQEIYDLIADIRDPEHPLTLEQLSVVSLEDISVPDGIAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLER  127 (181)
T ss_pred             cCCCCCcCHHHHHHHHHhcCCCCCCccHhhcceeeeccccccCCCCCCeeEEEEEEeccCCCchhHHHHhhhheeeeehh
Confidence            35566799999999999999999999999999998666643221   1  358999999999999999999999999999


Q ss_pred             hCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccchHHHHhhhcc
Q psy16125        106 ALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCIS  156 (162)
Q Consensus       106 ~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~~~~~~~~~~  156 (162)
                      .+|.-+.|+|.+..++|..+.+.|+|++|||||+||-||.-|..+|+.|+.
T Consensus       128 ~lpprF~v~v~ikkGtH~se~qvNKQLnDKeRVaAAcENEqLL~v~~kml~  178 (181)
T COG5133         128 HLPPRFHVQVHIKKGTHISERQVNKQLNDKERVAAACENEQLLDVMEKMLP  178 (181)
T ss_pred             cCCCceeEEEEEecCCcccHHHHhhhhchHHHHHHhhchHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999999999985

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=99.76  E-value=1.5e-18  Score=118.41  Aligned_cols=72  Identities=28%  Similarity=0.386  Sum_probs=64.5

Q ss_pred             HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEE
Q psy16125         39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVV  115 (162)
Q Consensus        39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V  115 (162)
                      +++|+++|++|+||++|+||++||||+++.+   + +++|+|.|++++|+|++...|+++|+++| ++++|+.+|+|
T Consensus         1 k~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i---~-~~~V~v~l~l~~~~~~~~~~l~~~i~~~l-~~l~gv~~V~V   72 (72)
T PF01883_consen    1 KQAVRDALKQVKDPELGKDIVELGMVRDISI---E-GGKVSVSLELPTPACPAAEPLREEIREAL-KALPGVKSVKV   72 (72)
T ss_dssp             HHHHHHHHTT-BETTTSSBTTTTTSEEEEEE---C-TCEEEEEE--SSTTHTTHHHHHHHHHHHH-HTSTT-SEEEE
T ss_pred             CHHHHHHHhCCCCCCCCCCHHHcCCeeEEEE---E-CCEEEEEEEECCCCchHHHHHHHHHHHHH-HhCCCCceEeC
Confidence            5899999999999999999999999999999   3 58999999999999999999999999999 69999998876

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>TIGR02945 SUF_assoc FeS assembly SUF system protein

Probab=99.74  E-value=2.4e-17  Score=118.94  Aligned_cols=89  Identities=21%  Similarity=0.401  Sum_probs=82.9

Q ss_pred             HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy16125         39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT  118 (162)
Q Consensus        39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~  118 (162)
                      +++|+++|++|.||+++++|+++|+|+++.+   ++++.|+|.|++++|+|+....++..++++| +.++|+.+|+|++.
T Consensus         3 ~~~I~~~L~~v~dP~l~~~lv~~g~V~~i~v---~~~~~v~i~l~l~~p~~~~~~~l~~~i~~al-~~l~gv~~v~v~i~   78 (99)
T TIGR02945         3 KDAVIEALKTVYDPEIPVNIYELGLIYDIDV---DDDGHVDIQMTLTAPNCPVAGSMPGEVENAV-RAVPGVGSVTVELV   78 (99)
T ss_pred             HHHHHHHHcCCCCCCCCCCeecCCCeeEEEE---CCCCeEEEEEEECCCCCChHHHHHHHHHHHH-HhCCCCceEEEEEE
Confidence            5789999999999999999999999999998   3236999999999999999999999999999 78999999999999


Q ss_pred             cCCCCCchhchhhcCCHH
Q psy16125        119 PGSHSTEFAINKQLADKE  136 (162)
Q Consensus       119 ~~~h~~~~~w~~~l~~~E  136 (162)
                           ..++|+++++++|
T Consensus        79 -----~~~~~~~~~~~~~   91 (99)
T TIGR02945        79 -----WDPPWTPERMSEE   91 (99)
T ss_pred             -----eeCCCChHHCCHH
Confidence                 8899999999975

Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=99.71  E-value=4.5e-17  Score=126.47  Aligned_cols=86  Identities=24%  Similarity=0.341  Sum_probs=75.6

Q ss_pred             CCCCCCC-CCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchh
Q psy16125         49 IYDPEHP-LTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFA  127 (162)
Q Consensus        49 V~DPEl~-~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~  127 (162)
                      |.|||++ +||++||+|++|++  +  +++|.|+|++|+++||+.+.|+++|+++| +++ |+.+|+|++.     +.|+
T Consensus         1 v~DPEi~~~sIvdLG~Vr~V~v--~--gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL-~~~-Gv~~V~V~i~-----~~p~   69 (146)
T TIGR02159         1 VPDPEIPVVSVTDLGMVREVDV--D--GGGVVVKFTPTYSGCPALEVIRQDIRDAV-RAL-GVEVVEVSTS-----LDPP   69 (146)
T ss_pred             CcCCCCCCCCchhcCCeeEEEE--E--CCEEEEEEEeCCCCCchHHHHHHHHHHHH-Hhc-CCCeEEEeEe-----eCCC
Confidence            7899999 89999999999999  3  46899999999999999999999999999 566 8999999999     9999


Q ss_pred             chhhcCCHHHHHHhccccc
Q psy16125        128 INKQLADKERVAAALENST  146 (162)
Q Consensus       128 w~~~l~~~Erv~aalen~~  146 (162)
                      |+.++++++ -++.|+..+
T Consensus        70 Wt~d~it~~-gr~~l~~~g   87 (146)
T TIGR02159        70 WTTDWITED-AREKLREYG   87 (146)
T ss_pred             CChHHCCHH-HHHHHHhcC
Confidence            999999984 444454444

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=99.32  E-value=9.6e-12  Score=108.87  Aligned_cols=79  Identities=9%  Similarity=0.056  Sum_probs=73.5

Q ss_pred             cCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEE
Q psy16125         36 EFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVV  115 (162)
Q Consensus        36 ~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V  115 (162)
                      ++.+++|+++|++|.||+++++||++|||+++.+  +  +++|+|.+.+|+++||....++.+++++| +.++|+.+++|
T Consensus        11 ~~~~~~v~~~l~~v~~p~~~~~~~~~~~v~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   85 (369)
T PRK11670         11 EALRAMVAGTLANFQHPTLKHNLTTLKALHHVAL--L--DDTLHIELVMPFVWNSAFEELKEQCSAEL-LRITGAKAIDW   85 (369)
T ss_pred             cchHHHHHHHHhcCCCCCCCCChhhhCCeeEEEE--e--CCEEEEEEEECCCCchHHHHHHHHHHHHH-HhcCCCceEEE
Confidence            4568999999999999999999999999999999  3  57999999999999999999999999999 78999999999


Q ss_pred             EEec
Q psy16125        116 EITP  119 (162)
Q Consensus       116 ~i~~  119 (162)
                      ++..
T Consensus        86 ~~~~   89 (369)
T PRK11670         86 KLSH   89 (369)
T ss_pred             EEee
Confidence            8873

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=94.39  E-value=0.24  Score=40.14  Aligned_cols=71  Identities=18%  Similarity=0.173  Sum_probs=53.6

Q ss_pred             HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchH-HHHHHHHHHHHHHhCC-CceeEEE
Q psy16125         39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA-TLIGLSIRVRLIRALP-ARFKVVV  115 (162)
Q Consensus        39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~-~~I~~~I~~aL~~~lp-gv~~V~V  115 (162)
                      .+.|.++|.+-.-|-|-.+   =|-|.=++|   ++++.|+|.|.=.+.+||+. ..|+..|+..|++.+| ++..|.-
T Consensus       108 ~~~i~~~l~~~irP~l~~d---GGdielv~v---~~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~~  180 (192)
T PRK11190        108 MERVEYVLQSQINPQLAGH---GGRVSLMEI---TEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRD  180 (192)
T ss_pred             HHHHHHHHHhccChhHHhc---CCcEEEEEE---cCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEEE
Confidence            6778888887677877654   455555666   33568899999999999995 5677799999988888 7766543

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=93.67  E-value=0.3  Score=39.47  Aligned_cols=71  Identities=17%  Similarity=0.175  Sum_probs=52.6

Q ss_pred             HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchH-HHHHHHHHHHHHHhCCCceeEEE
Q psy16125         39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA-TLIGLSIRVRLIRALPARFKVVV  115 (162)
Q Consensus        39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~-~~I~~~I~~aL~~~lpgv~~V~V  115 (162)
                      .+.|.++|..-.-|-+-.+   =|=|.=++|  + +++.|+|.|.=.+.+||+. ..++..|+..|++.+|++.+|..
T Consensus       107 ~~~i~~~l~~~irP~l~~d---GGdielv~v--~-~~~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~  178 (190)
T TIGR03341       107 EERINYVLQSEINPQLASH---GGKVTLVEI--T-DDGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRD  178 (190)
T ss_pred             HHHHHHHHHhccCHHHHhc---CCceEEEEE--c-CCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEE
Confidence            6778888875555665443   455555566  2 2468899999999999995 66788999999888998876544

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=91.35  E-value=1.1  Score=30.20  Aligned_cols=48  Identities=21%  Similarity=0.267  Sum_probs=36.6

Q ss_pred             cceeeeeeeeeCCCCeEEEEEEeCCCCCchH-HHHHHHHHHHHHHhCCCceeE
Q psy16125         62 HVVDLSLIQVNNETNQIKVNFTPTIPHCSMA-TLIGLSIRVRLIRALPARFKV  113 (162)
Q Consensus        62 GlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~-~~I~~~I~~aL~~~lpgv~~V  113 (162)
                      |=|.=+++  +  ++.|+|.|.=.+.+||+. ..++..|++.|++.+|.+.+|
T Consensus        17 Gdv~lv~v--~--~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V   65 (68)
T PF01106_consen   17 GDVELVDV--D--DGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRV   65 (68)
T ss_dssp             EEEEEEEE--E--TTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEE
T ss_pred             CcEEEEEe--c--CCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceE
Confidence            44444556  3  459999999999999995 567799999998889987665

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=89.83  E-value=0.61  Score=29.85  Aligned_cols=57  Identities=16%  Similarity=0.244  Sum_probs=38.7

Q ss_pred             eCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy16125         84 PTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST  146 (162)
Q Consensus        84 lT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~  146 (162)
                      +.+..|+..   ...|+++| +.++||.+++|++.  .+.-.-.|++...+.+.+..+++.-+
T Consensus         4 v~~m~C~~C---~~~v~~~l-~~~~GV~~v~vd~~--~~~v~v~~~~~~~~~~~i~~~i~~~G   60 (62)
T PF00403_consen    4 VPGMTCEGC---AKKVEKAL-SKLPGVKSVKVDLE--TKTVTVTYDPDKTSIEKIIEAIEKAG   60 (62)
T ss_dssp             EESTTSHHH---HHHHHHHH-HTSTTEEEEEEETT--TTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred             ECCcccHHH---HHHHHHHH-hcCCCCcEEEEECC--CCEEEEEEecCCCCHHHHHHHHHHhC
Confidence            344555544   35788899 78999999999876  23334466666666778888877644

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=88.07  E-value=3.4  Score=29.93  Aligned_cols=75  Identities=13%  Similarity=0.187  Sum_probs=51.1

Q ss_pred             HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchH-HHHHHHHHHHHHHhCCCceeEEEEE
Q psy16125         39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA-TLIGLSIRVRLIRALPARFKVVVEI  117 (162)
Q Consensus        39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~-~~I~~~I~~aL~~~lpgv~~V~V~i  117 (162)
                      .++|.+.|.+=.-|-+-.   +=|=|.=+.|  +..+|.|.+.|.=.+.+||.. -.++..|++.|+..+|++..|..-+
T Consensus        11 ~e~v~~~l~~~irP~l~~---dGGdve~~~i--~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~~v~   85 (93)
T COG0694          11 LERVEEVLDEKIRPQLAM---DGGDVELVGI--DEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVEQVT   85 (93)
T ss_pred             HHHHHHHHHhccCcceec---cCCeEEEEEE--ecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEEEcc
Confidence            344455555444455443   3455555556  333578999999999999994 6678889999988889887776644


Q ss_pred             e
Q psy16125        118 T  118 (162)
Q Consensus       118 ~  118 (162)
                      .
T Consensus        86 ~   86 (93)
T COG0694          86 E   86 (93)
T ss_pred             C
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
3ux3_A	130	Crystal Structure Of Domain-Swapped Fam96a Minor Di		5e-31
3ux2_A	130	Crystal Structure Of Domain-Swapped Fam96a Major Di		1e-30

>pdb|3UX3|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer Length = 130

Iteration: 1
 Score =  129 bits (325), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 87/123 (70%), Gaps = 3/123 (2%)
Query: 36  EFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQV---NNETNQIKVNFTPTIPHCSMA 92
           E  + E++DLIR I DPE P TLEEL VV  S ++V   N E   + + FTPT+PHCS+A
Sbjct: 7   EEKALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLA 66
Query: 93  TLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVIN 152
           TLIGL +RV+L R LP + K+ + I+ G+HSTE  INKQ+ DKERVAAA+EN  L  ++ 
Sbjct: 67  TLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVE 126
Query: 153 QCI 155
           QC+
Sbjct: 127 QCV 129

>pdb|3UX2|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Major Dimer Length = 130

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
Query: 41  EIFDLIRNIYDPEHPLTLEELHVVDLSLIQV---NNETNQIKVNFTPTIPHCSMATLIGL 97
           E++DLIR I DPE P TLEEL VV  S ++V   N E   + + FTPT+PHCS+ATLIGL
Sbjct: 12  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71
Query: 98  SIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCI 155
            +RV+L R LP + K+ + I+ G+HSTE  INKQ+ DKERVAAA EN  L  ++ QC+
Sbjct: 72  CLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAXENPNLREIVEQCV 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	3e-60
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	2e-07
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	3e-07
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	7e-06

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A Length = 130

 Score =  182 bits (462), Expect = 3e-60
 Identities = 66/129 (51%), Positives = 89/129 (68%), Gaps = 3/129 (2%)

Query: 30  NDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQV---NNETNQIKVNFTPTI 86
           ++    E  + E++DLIR I DPE P TLEEL VV  S ++V   N E   + + FTPT+
Sbjct: 1   SNARIMEEKALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTV 60

Query: 87  PHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146
           PHCS+ATLIGL +RV+L R LP + K+ + I+ G+HSTE  INKQ+ DKERVAAA+EN  
Sbjct: 61  PHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPN 120

Query: 147 LIGVINQCI 155
           L  ++ QC+
Sbjct: 121 LREIVEQCV 129

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} Length = 108

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 30  NDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLI-QVN-NETNQIKVNFTPTIP 87
           ++ ++ E    +++  +  + DPE  +      +V+L L+  V  +E N   +  T T  
Sbjct: 1   SNAMSQEAFENKLYANLEAVIDPELGV-----DIVNLGLVYDVTADENNNAVITMTMTSI 55

Query: 88  HCSMATLIGLSIRVRLIRALPARFKVVVEIT 118
            C MA  I   ++  L   +P   ++ V + 
Sbjct: 56  GCPMAGQIVSDVKKVLSTNVPEVNEIEVNVV 86

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* Length = 103

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 34  TDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLI-QVNNETNQIKVNFTPTIPHCSMA 92
                  + + L+  +YDPE       L VV+L LI  +  E  +  V  T T P C + 
Sbjct: 3   ARNPLEAQAWALLEAVYDPELG-----LDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLH 57

Query: 93  TLIGLSIRVRLIRALPARFKVVVEIT 118
             +G ++R   +  LP   +V VE+T
Sbjct: 58  DSLGEAVRQA-LSRLPGVEEVEVEVT 82

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A Length = 103

 Score = 41.7 bits (99), Expect = 7e-06
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 33  ITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLI-QVN-NETNQIKVNFTPTIPHCS 90
           ++ +    ++ + ++N+ D E       L VV L L+  +  ++ N +KV  T T P C 
Sbjct: 2   MSKKVTKEDVLNALKNVIDFELG-----LDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCP 56

Query: 91  MATLIGLSIRVRLIRALPARFKVVVEIT 118
           +A +I        I+ +     V VE+T
Sbjct: 57  LAGMILSDAEEA-IKKIEGVNNVEVELT 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	99.98
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	99.91
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	99.91
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	99.89
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	95.28
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	91.29
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	90.22
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	89.6
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	89.3
4a4j_A	69	Pacszia, cation-transporting ATPase PACS; hydrolas	88.13
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	87.61
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	87.11
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	86.87
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	86.69
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	85.96
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	85.11
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	84.47
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	83.46
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	82.32
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	81.26

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A

Probab=99.98  E-value=1.5e-33  Score=213.54  Aligned_cols=119  Identities=55%  Similarity=0.858  Sum_probs=105.1

Q ss_pred             CHHHHHHHhccCCCCCCCCCceeecceeeeeeee---eCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEE
Q psy16125         38 DSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQV---NNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVV  114 (162)
Q Consensus        38 t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~---~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~  114 (162)
                      +.++||++|++|+|||+|.+|++||+||++.|++   .++++.|.|.||||+|+||++..|..+|+.+|.+.+|+..+|+
T Consensus         9 ~~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~   88 (130)
T 3ux2_A            9 KALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLE   88 (130)
T ss_dssp             HHHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred             cHHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEE
Confidence            4789999999999999999999999999988842   2335689999999999999999999999999988899999999


Q ss_pred             EEEecCCCCCchhchhhcCCHHHHHHhccccchHHHHhhhcc
Q psy16125        115 VEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCIS  156 (162)
Q Consensus       115 V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~~~~~~~~~~  156 (162)
                      |++..++|..+.+.|||++|||||+|||||.+|+.+|++|+.
T Consensus        89 v~I~pgtH~~e~~vnKQl~DKERvaAAlEn~~l~~~v~~c~~  130 (130)
T 3ux2_A           89 IYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCVL  130 (130)
T ss_dssp             CCCCCC------CHHHHHHCHHHHHHHHHSHHHHHHHHHHHC
T ss_pred             EEECCCCCcCHHHHHHhhhhHHHHHHHhcCHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999973

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=99.91  E-value=9.7e-25  Score=157.91  Aligned_cols=92  Identities=23%  Similarity=0.305  Sum_probs=87.0

Q ss_pred             cCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEE
Q psy16125         36 EFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVV  115 (162)
Q Consensus        36 ~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V  115 (162)
                      |+++++|+++|++|+|||+++|||+||+|++|.+   +++++|+|.|++|+++||+...|+.+|+++| ++++|+.+|+|
T Consensus         5 m~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v---~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~v~V   80 (103)
T 1uwd_A            5 KVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQI---DDQNNVKVLMTMTTPMCPLAGMILSDAEEAI-KKIEGVNNVEV   80 (103)
T ss_dssp             CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEE---CTTCEEEEEECCSSSCCSSHHHHHHHHHHHH-HTSSSCCEEEE
T ss_pred             cchHHHHHHHHcCCCCCCCCcChhhcCCeeEEEE---cCCCEEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCcceEEE
Confidence            5789999999999999999999999999999999   3347999999999999999999999999999 78999999999


Q ss_pred             EEecCCCCCchhchhhcCCHH
Q psy16125        116 EITPGSHSTEFAINKQLADKE  136 (162)
Q Consensus       116 ~i~~~~h~~~~~w~~~l~~~E  136 (162)
                      +++     +.++|+++++++|
T Consensus        81 ~l~-----~~p~W~~~~~s~~   96 (103)
T 1uwd_A           81 ELT-----FDPPWTPERMSPE   96 (103)
T ss_dssp             EEC-----CSSCCCGGGSCHH
T ss_pred             EEe-----cCCCCChHHCCHH
Confidence            999     9999999999986

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=99.91  E-value=3e-25  Score=162.33  Aligned_cols=93  Identities=19%  Similarity=0.223  Sum_probs=87.1

Q ss_pred             cCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEE
Q psy16125         36 EFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVV  115 (162)
Q Consensus        36 ~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V  115 (162)
                      +.++++|+++|++|+|||+|+|||+||+||+|.|   +++++|+|.|+||+|+||+...|+.+|+++|+++++|+.+|+|
T Consensus         7 ~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v---~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V   83 (108)
T 3lno_A            7 EAFENKLYANLEAVIDPELGVDIVNLGLVYDVTA---DENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEV   83 (108)
T ss_dssp             HHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEE---CTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred             hhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEE---CCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEE
Confidence            4578999999999999999999999999999999   3347999999999999999999999999999567999999999


Q ss_pred             EEecCCCCCchhchhhcCCHH
Q psy16125        116 EITPGSHSTEFAINKQLADKE  136 (162)
Q Consensus       116 ~i~~~~h~~~~~w~~~l~~~E  136 (162)
                      +++     |.|+|++++++++
T Consensus        84 ~l~-----~~p~W~~~~~s~~   99 (108)
T 3lno_A           84 NVV-----WNPPWSKERMSRM   99 (108)
T ss_dssp             EEC-----CSSCCCGGGSCHH
T ss_pred             EEE-----ecCCCChHHCCHH
Confidence            999     9999999999986

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=99.89  E-value=7.1e-24  Score=153.50  Aligned_cols=89  Identities=25%  Similarity=0.354  Sum_probs=84.4

Q ss_pred             CHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEE
Q psy16125         38 DSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEI  117 (162)
Q Consensus        38 t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i  117 (162)
                      ++++|+++|++|+|||+++|||+||+|++|.+  +  ++.|+|.|++|+++||+...|+.+|+++| ++++|+.+|+|++
T Consensus         7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v--~--~~~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~V~V~l   81 (103)
T 3cq1_A            7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVV--E--PPRAYVRMTLTTPGCPLHDSLGEAVRQAL-SRLPGVEEVEVEV   81 (103)
T ss_dssp             HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEE--E--TTEEEEEECCSSSSCCSSCHHHHHHHHHH-HTSTTCCEEEEEE
T ss_pred             HHHHHHHHHhCCCCCCCCcCchhcCceEEEEE--E--CCEEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCceeEEEEE
Confidence            58899999999999999999999999999999  3  46999999999999999999999999999 7899999999999


Q ss_pred             ecCCCCCchhchhhcCCHH
Q psy16125        118 TPGSHSTEFAINKQLADKE  136 (162)
Q Consensus       118 ~~~~h~~~~~w~~~l~~~E  136 (162)
                      +     +.++|+++++++|
T Consensus        82 ~-----~~p~W~~~~~s~~   95 (103)
T 3cq1_A           82 T-----FEPPWTLARLSEK   95 (103)
T ss_dssp             C-----CSSCCCGGGCCSG
T ss_pred             e-----cCCCCChHHCCHH
Confidence            9     9999999999985

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=95.28  E-value=0.12  Score=36.02  Aligned_cols=72  Identities=14%  Similarity=0.156  Sum_probs=51.9

Q ss_pred             HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHH-HHHHHHHHHHHHhCCCceeEEEEE
Q psy16125         39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMAT-LIGLSIRVRLIRALPARFKVVVEI  117 (162)
Q Consensus        39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~-~I~~~I~~aL~~~lpgv~~V~V~i  117 (162)
                      .+.|.++|.+ .-|-+-.   +=|=|.=+++   + ++.|+|.|.=.+.+||+.. .++..|++.|++.+|++..|....
T Consensus         9 ~~~I~~~L~~-IRP~L~~---dGGdvelv~v---~-~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~   80 (88)
T 1xhj_A            9 FDQVAEVIER-LRPFLLR---DGGDCTLVDV---E-DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF   80 (88)
T ss_dssp             HHHHHHHHHH-HHHHHHH---HSCEEEEEEC---C-SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             HHHHHHHHHH-hcHHHHh---cCCeEEEEEE---E-CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEecc
Confidence            5666666665 4454432   2343444555   3 5899999999999999965 588899999988999998877655


Q ss_pred             e
Q psy16125        118 T  118 (162)
Q Consensus       118 ~  118 (162)
                      .
T Consensus        81 ~   81 (88)
T 1xhj_A           81 L   81 (88)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=91.29  E-value=0.28  Score=34.36  Aligned_cols=70  Identities=13%  Similarity=0.078  Sum_probs=48.6

Q ss_pred             HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHH-HHHHHHHHHHHHhCCCceeEEE
Q psy16125         39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMAT-LIGLSIRVRLIRALPARFKVVV  115 (162)
Q Consensus        39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~-~I~~~I~~aL~~~lpgv~~V~V  115 (162)
                      .+.|.+.|.+-.-|-+..   +=|=|.=+.+  +  ++.|+|.|.=.+.+||+.. .++..|++.|++.+|++..|..
T Consensus        15 ~~~I~~~L~~~IRP~L~~---dGGdvelv~v--~--~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~   85 (92)
T 1veh_A           15 VAMIKELLDTRIRPTVQE---DGGDVIYRGF--E--DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQ   85 (92)
T ss_dssp             HHHHHHHHHHTTHHHHHH---HSCCCCEEEE--E--TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEE
T ss_pred             HHHHHHHHHHHhhHHHHh---cCCeEEEEEE--e--CCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEE
Confidence            556667776544454422   1233444445  3  4788888888899999965 4788999999888999887754

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0

Probab=90.22  E-value=0.35  Score=30.23  Aligned_cols=62  Identities=16%  Similarity=0.307  Sum_probs=42.1

Q ss_pred             EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      +.+.+....|+..   ...|+.+| +.++|+..+.|++..  +.-.-.|++...+.+.+..+++..++
T Consensus         4 ~~~~v~gm~C~~C---~~~ie~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy   65 (74)
T 3dxs_X            4 IQVGVTGMTCAAC---SNSVEAAL-MNVNGVFKASVALLQ--NRADVVFDPNLVKEEDIKEEIEDAGF   65 (74)
T ss_dssp             EEEEEECCCSHHH---HHHHHHHH-HTSTTEEEEEEEGGG--TEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred             EEEEECCcCCHHH---HHHHHHHH-hcCCCEEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHCCC
Confidence            4556667778654   35788888 789999999998762  11222455555677788888776553

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=89.60  E-value=0.49  Score=35.99  Aligned_cols=71  Identities=17%  Similarity=0.258  Sum_probs=50.3

Q ss_pred             CCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchH-HHHHHHHHHHHHHhCCCceeEEE
Q psy16125         37 FDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA-TLIGLSIRVRLIRALPARFKVVV  115 (162)
Q Consensus        37 ~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~-~~I~~~I~~aL~~~lpgv~~V~V  115 (162)
                      ++.++|.++|.. .-|-+..+   =|=|.=+++  +  ++.|+|.|.=.+.+||.. ..++..|++.|++.+|++..|..
T Consensus         4 ~~~e~v~~~L~~-iRP~l~~d---GGdvelv~v--~--~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~   75 (154)
T 2z51_A            4 LTEENVESVLDE-IRPYLMSD---GGNVALHEI--D--GNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEA   75 (154)
T ss_dssp             SCHHHHHHHHHH-HHHHHHHT---TEEEEEEEE--E--TTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             chHHHHHHHHHH-hChHHHhc---CCeEEEEEE--E--CCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEE
Confidence            467777777765 34544332   233444455  3  479999999999999995 45888999999889999876654

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=89.30  E-value=1.1  Score=34.13  Aligned_cols=70  Identities=19%  Similarity=0.236  Sum_probs=50.5

Q ss_pred             cCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEE
Q psy16125         36 EFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVV  115 (162)
Q Consensus        36 ~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V  115 (162)
                      .++++.|-++|.++ -|-+..+  +=|=|.-++|  +  ++.|+|.|+=.+.+|   ..++..|+++|++.+|++.+|..
T Consensus        84 ~L~~~~v~~~L~~i-RP~L~~~--dGGdvelv~v--~--~~~v~v~l~Gac~~~---~Tlk~~Ie~~l~e~vP~i~~V~~  153 (154)
T 2z51_A           84 ELNEENIEKVLEEI-RPYLIGT--ADGSLDLVEI--E--DPIVKIRITGPAAGV---MTVRVAVTQKLREKIPSIAAVQL  153 (154)
T ss_dssp             CSSHHHHHHHHHHH-GGGCCGG--GCCEEEEEEE--E--TTEEEEEEESGGGGC---HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHHHHHHHHHH-HHHhhhc--CCCCeEEEEE--E--CCEEEEEEecCCccc---HhHHHHHHHHHHHHCCCccEEEe
Confidence            56788888888874 3665421  2345555667  3  578998888665555   67888999999999999988753

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A

Probab=88.13  E-value=0.73  Score=28.20  Aligned_cols=61  Identities=13%  Similarity=0.165  Sum_probs=40.4

Q ss_pred             EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      +.+.+....|+..   ...|+.+| +.++|+..+.|++..  ..-.-.| +...+.+.+..+++..++
T Consensus         4 ~~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~-~~~~~~~~i~~~i~~~Gy   64 (69)
T 4a4j_A            4 INLQLEGMDCTSC---ASSIERAI-AKVPGVQSCQVNFAL--EQAVVSY-HGETTPQILTDAVERAGY   64 (69)
T ss_dssp             EEEEEESCCSHHH---HHHHHHHH-HTSTTEEEEEEETTT--TEEEEEE-CTTCCHHHHHHHHHHTTC
T ss_pred             EEEEECCeecHHH---HHHHHHHH-hcCCCeEEEEEEecC--CEEEEEE-CCCCCHHHHHHHHHHcCC
Confidence            4556667778654   35678888 789999999998762  1112234 455677788888776553

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A

Probab=87.61  E-value=1.1  Score=27.46  Aligned_cols=62  Identities=10%  Similarity=0.230  Sum_probs=39.8

Q ss_pred             EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      +.+.+....|+...   ..|+.+| ..++|+..+.+++..  ....-.|++...+.+.+..+++..++
T Consensus         4 ~~~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy   65 (75)
T 3cjk_B            4 VTISVEGMTCNSCV---WTIEQQI-GKVNGVHHIKVSLEE--KNATIIYDPKLQTPKTLQEAIDDMGF   65 (75)
T ss_dssp             EEEEECCCCSHHHH---HHHHHHH-HTSTTEEEEEEETTT--TEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred             EEEEECCccCHHHH---HHHHHHH-hcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence            45666778886543   4578888 789999999888752  22222445555566667766665543

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=87.11  E-value=0.5  Score=31.76  Aligned_cols=68  Identities=13%  Similarity=0.155  Sum_probs=47.4

Q ss_pred             CCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEE
Q psy16125         37 FDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVV  114 (162)
Q Consensus        37 ~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~  114 (162)
                      ++.+.|.++|.+ .-|-+..+=  =|=|.=+++  +  ++.|+|.|.=.+.+|   ..++..|+++|++.+|++..|.
T Consensus         4 ~~~~~V~~~L~~-iRP~L~~dG--GGdvelv~v--~--~g~V~v~l~GaC~gc---~Tlk~gIe~~L~~~vpei~~V~   71 (74)
T 1th5_A            4 LNEENVEKVLNE-IRPYLAGTG--GGGLQFLMI--K--GPIVKVRLTGPAAVV---RTVRIAVSKKLREKIPSIQIVQ   71 (74)
T ss_dssp             CSHHHHHHHHTT-THHHHTTTT--CCCCCCCEE--E--TTEEEECCCSSSSSS---SSHHHHHHHHHHHHCTTCSEEE
T ss_pred             HHHHHHHHHHHH-HhHHHHhcC--CCcEEEEEE--e--CCEEEEEEecCCcch---HHHHHHHHHHHHHHCCCCcEEE
Confidence            467888888887 666555432  022333445  2  478888887777777   6888899999988899987765

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A

Probab=86.87  E-value=1.1  Score=26.88  Aligned_cols=62  Identities=11%  Similarity=0.205  Sum_probs=39.1

Q ss_pred             EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      +.+.+....|+...   ..|+.+| ..++|+..+.+++..  ..-.-.|++...+.+.+..+++..++
T Consensus         5 ~~~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G~   66 (72)
T 1osd_A            5 VTLSVPGMTCSACP---ITVKKAI-SKVEGVSKVDVTFET--RQAVVTFDDAKTSVQKLTKATADAGY   66 (72)
T ss_dssp             EEEECTTCCSTTHH---HHHHHHH-HTSTTEEEEEEETTT--TEEEEEEETTTCCHHHHHHHHHHTTC
T ss_pred             EEEEECCeEcHHHH---HHHHHHH-hcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45666677776543   3477888 789999999888752  21222445545566666666665543

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}

Probab=86.69  E-value=1.4  Score=26.38  Aligned_cols=63  Identities=14%  Similarity=0.239  Sum_probs=39.8

Q ss_pred             EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy16125         78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST  146 (162)
Q Consensus        78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~  146 (162)
                      -++.+.+....|+...   ..|+.+| ..++|+..+.|++..  ..-.-.|.+...+.+.+..+++..+
T Consensus         5 ~~~~~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G   67 (71)
T 2l3m_A            5 EQLTLQVEGMSCGHCV---NAIESSV-KELNGVEQVKVQLAE--GTVEVTIDSSVVTLKDIVAVIEDQG   67 (71)
T ss_dssp             EEEEEEEECCCSHHHH---HHHHHHH-HTSTTEEEEEEETTT--TEEEEEEETTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEECCccCHHHH---HHHHHHH-HcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcC
Confidence            4556677778886543   4477888 789999998888752  1122234444556666666665544

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A

Probab=85.96  E-value=1.3  Score=25.91  Aligned_cols=60  Identities=12%  Similarity=0.191  Sum_probs=36.9

Q ss_pred             EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy16125         81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST  146 (162)
Q Consensus        81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~  146 (162)
                      .+.+....|+...   ..++.+| ..++|+..+.+++..  ..-.-.|.+...+.+.+..+++..+
T Consensus         5 ~~~v~gm~C~~c~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G   64 (69)
T 2qif_A            5 TLQVEGMSCQHCV---KAVETSV-GELDGVSAVHVNLEA--GKVDVSFDADKVSVKDIADAIEDQG   64 (69)
T ss_dssp             EEEEECCCSHHHH---HHHHHHH-HTSTTEEEEEEETTT--TEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred             EEEECCcccHHHH---HHHHHHH-hcCCCeeEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcC
Confidence            4555667776543   4478888 789999988887652  1122234554556666666665544

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1

Probab=85.11  E-value=1.3  Score=26.11  Aligned_cols=60  Identities=12%  Similarity=0.174  Sum_probs=36.7

Q ss_pred             EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      +.+....|+...   ..++.+| +.++|+..+.+++..  ..-.-.+++...+.+.+..+++..++
T Consensus         4 ~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G~   63 (68)
T 1cpz_A            4 FSVKGMSCNHCV---ARIEEAV-GRISGVKKVKVQLKK--EKAVVKFDEANVQATEICQAINELGY   63 (68)
T ss_dssp             EEESCCCSSSHH---HHHHHHH-HTSTTEEEEEEETTT--TEEEEEECTTTCCHHHHHHHHHTTSS
T ss_pred             EEECCeeCHHHH---HHHHHHH-HcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence            445566676543   3477888 789999999888752  11222344444566667776665543

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A

Probab=84.47  E-value=1.5  Score=27.17  Aligned_cols=64  Identities=9%  Similarity=0.209  Sum_probs=39.2

Q ss_pred             EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      -++.+.+....|+...   ..|+.+| ..++|+..+.|++..  ....-.|.+...+.+.+..+++..++
T Consensus         8 ~~~~~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy   71 (79)
T 1kvi_A            8 NSVTISVEGMTCNSCV---WTIEQQI-GKVNGVHHIKVSLEE--KNATIIYDPKLQTPKTLQEAIDDMGF   71 (79)
T ss_dssp             EEEEEEECCCCSTTTH---HHHHHHH-HHSSSCCCEEEEGGG--TEEEEEECTTTCCHHHHHHHHHHHCC
T ss_pred             EEEEEEECCccCHHHH---HHHHHHH-hcCCCeEEEEEEccC--CEEEEEECCCCCCHHHHHHHHHHCCC
Confidence            4455566666665432   3477888 789999999998763  11222344444566667776665543

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}

Probab=83.46  E-value=1.5  Score=25.72  Aligned_cols=59  Identities=12%  Similarity=0.113  Sum_probs=36.2

Q ss_pred             EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy16125         81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST  146 (162)
Q Consensus        81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~  146 (162)
                      .+.+....|+..   ...|+.+| ..++|+..+.+++..  +.-.-.+.+.. +.+.+..+++..+
T Consensus         4 ~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~-~~~~i~~~i~~~G   62 (66)
T 1yg0_A            4 TFQVPSITCNHC---VDKIEKFV-GEIEGVSFIDVSVEK--KSVVVEFDAPA-TQDLIKEALLDAG   62 (66)
T ss_dssp             EECCTTCSCSHH---HHHHHHHH-TTSSSEEEEEEETTT--TEEEEEECTTC-CHHHHHHHHHHHT
T ss_pred             EEEECCcccHHH---HHHHHHHH-hcCCCceEEEEEcCC--CEEEEEECCCC-CHHHHHHHHHHcC
Confidence            455666778654   34578888 789999998888752  11122344433 5566666665544

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A

Probab=82.32  E-value=1.7  Score=25.85  Aligned_cols=59  Identities=14%  Similarity=0.184  Sum_probs=34.4

Q ss_pred             EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy16125         81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST  146 (162)
Q Consensus        81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~  146 (162)
                      .+.+....|+..   ...|+.+| ..++|+..+.+++..  ..-.-.|+.. .+.+.+..+++..+
T Consensus         6 ~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~-~~~~~i~~~i~~~G   64 (71)
T 2xmw_A            6 NLQLEGMRCAAC---ASSIERAI-AKVPGVQSCQVNFAL--EQAVVSYHGE-TTPQILTDAVERAG   64 (71)
T ss_dssp             EEEEECCCSHHH---HHHHHHHH-HTSTTEEEEEEETTT--TEEEEEEC----CHHHHHHHHHHHT
T ss_pred             EEEECCcccHHH---HHHHHHHH-hcCCCeEEEEEEccC--CEEEEEECCC-CCHHHHHHHHHHcC
Confidence            445556777654   34578888 789999999988752  2112233333 45556666665443

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A

Probab=81.26  E-value=1.4  Score=26.40  Aligned_cols=61  Identities=15%  Similarity=0.136  Sum_probs=37.7

Q ss_pred             EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy16125         80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST  146 (162)
Q Consensus        80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~  146 (162)
                      +.+.+....|+..   ...|+.+| ..++|+..+.+++..  ..-.-.|.+...+.+.+..+++..+
T Consensus         5 ~~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G   65 (72)
T 1aw0_A            5 TVINIDGMTCNSC---VQSIEGVI-SKKPGVKSIRVSLAN--SNGTVEYDPLLTSPETLRGAIEDMG   65 (72)
T ss_dssp             EEEEEECCCHHHH---HHHHHHHH-HTSTTCCCEEEETTT--TEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred             EEEEECCeecHHH---HHHHHHHH-hcCCCeEEEEEEccC--CEEEEEECCCcCCHHHHHHHHHHCC
Confidence            3455566777554   34578888 789999999998752  2122234444455666666665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1uwda_	102	d.52.8.2 (A:) Hypothetical protein TM0487 {Thermot	6e-06
d2cu6a1	91	d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Th	2e-05

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.6 bits (95), Expect = 6e-06
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 33  ITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA 92
           ++ +    ++ + ++N+ D E  L +  L +V        ++ N +KV  T T P C +A
Sbjct: 1   MSKKVTKEDVLNALKNVIDFELGLDVVSLGLVYDI---QIDDQNNVKVLMTMTTPMCPLA 57

Query: 93  TLIGLSIRVRLIRALPARFKVVVEIT 118
            +I        I+ +     V VE+T
Sbjct: 58  GMILSDAE-EAIKKIEGVNNVEVELT 82

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

 Score = 38.7 bits (90), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 41  EIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIR 100
           + + L+  +YDPE  L +  L ++      +  E  +  V  T T P C +   +G ++R
Sbjct: 5   QAWALLEAVYDPELGLDVVNLGLIY----DLVVEPPRAYVRMTLTTPGCPLHDSLGEAVR 60

Query: 101 VRLIRALPARFKVVVEIT 118
            + +  LP   +V VE+T
Sbjct: 61  -QALSRLPGVEEVEVEVT 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	99.94
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	99.92
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	95.36
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	95.21
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	95.03
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	94.87
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	94.84
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	94.66
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	94.52
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	93.96
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	93.87
d1qupa2	72	Copper chaperone for superoxide dismutase, N-termi	92.15
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	91.82
d1p6ta2	79	Potential copper-translocating P-type ATPase CopA	91.12
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	90.44
d1mwza_	73	Metal ion-transporting ATPase ZntA, N-terminal dom	87.97
d1sb6a_	64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	87.41
d1cc8a_	72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	85.0

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=3.3e-27  Score=170.34  Aligned_cols=93  Identities=23%  Similarity=0.303  Sum_probs=87.7

Q ss_pred             CcCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEE
Q psy16125         35 DEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVV  114 (162)
Q Consensus        35 ~~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~  114 (162)
                      .++|+++|+++|++|+|||+++|||+|||||+|.|   ++++.|+|.|++|+++||+...|..++++++ ++++|+.+|+
T Consensus         3 ~~vt~~~V~~aL~~V~DPe~~~dIV~LGlV~~i~I---~~~g~V~v~~~lt~~~Cp~~~~i~~~i~~al-~~~~gV~~v~   78 (102)
T d1uwda_           3 KKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQI---DDQNNVKVLMTMTTPMCPLAGMILSDAEEAI-KKIEGVNNVE   78 (102)
T ss_dssp             SCCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEE---CTTCEEEEEECCSSSCCSSHHHHHHHHHHHH-HTSSSCCEEE
T ss_pred             cccCHHHHHHHHhCCCCCCCCcceeeccceeeEEe---ccccceEEEEecCCCCCchHHHHHHHHHHHH-HcCCCCceEE
Confidence            46789999999999999999999999999999999   3357899999999999999999999999999 7999999999


Q ss_pred             EEEecCCCCCchhchhhcCCHH
Q psy16125        115 VEITPGSHSTEFAINKQLADKE  136 (162)
Q Consensus       115 V~i~~~~h~~~~~w~~~l~~~E  136 (162)
                      |+++     |+|+|+++++++|
T Consensus        79 V~i~-----~~p~W~~~~~s~~   95 (102)
T d1uwda_          79 VELT-----FDPPWTPERMSPE   95 (102)
T ss_dssp             EEEC-----CSSCCCGGGSCHH
T ss_pred             EEEE-----ecCCCChHHCCHH
Confidence            9999     9999999999975

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.7e-26  Score=163.14  Aligned_cols=88  Identities=25%  Similarity=0.374  Sum_probs=83.9

Q ss_pred             HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy16125         39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT  118 (162)
Q Consensus        39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~  118 (162)
                      +++|+++|++|.|||+|+|||+||||+++.|  +  +++|.|.|+||+++||+...|.++|+++| ++++|+.+|+|+++
T Consensus         3 e~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i--~--~~~v~v~l~lt~~~cp~~~~i~~~i~~al-~~l~gv~~V~V~~~   77 (91)
T d2cu6a1           3 EAQAWALLEAVYDPELGLDVVNLGLIYDLVV--E--PPRAYVRMTLTTPGCPLHDSLGEAVRQAL-SRLPGVEEVEVEVT   77 (91)
T ss_dssp             HHHHHHHHTTCEETTTTEETTTTTCEEEEEE--E--TTEEEEEECCSSSSCCSSCHHHHHHHHHH-HTSTTCCEEEEEEC
T ss_pred             HHHHHHHHhcCCCCCCCcChhhccceeEEEE--e--ccccEEEEEcCCCCCcHHHHHHHHHHHHH-HcCCCCceEEEEEE
Confidence            7899999999999999999999999999999  3  58999999999999999999999999999 78999999999999


Q ss_pred             cCCCCCchhchhhcCCHH
Q psy16125        119 PGSHSTEFAINKQLADKE  136 (162)
Q Consensus       119 ~~~h~~~~~w~~~l~~~E  136 (162)
                           |+|+|++.++++|
T Consensus        78 -----~~p~W~~~~is~~   90 (91)
T d2cu6a1          78 -----FEPPWTLARLSEK   90 (91)
T ss_dssp             -----CSSCCCGGGCCSC
T ss_pred             -----ecCCCChhhcCCC
Confidence                 9999999999863

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=95.36  E-value=0.05  Score=36.22  Aligned_cols=73  Identities=12%  Similarity=0.137  Sum_probs=50.1

Q ss_pred             HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchH-HHHHHHHHHHHHHhCCCceeEEEEE
Q psy16125         39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA-TLIGLSIRVRLIRALPARFKVVVEI  117 (162)
Q Consensus        39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~-~~I~~~I~~aL~~~lpgv~~V~V~i  117 (162)
                      .++|.++|.. .-|-+..   +=|-|.-+++   + ++.|+|.|.=.+.+||+. ..++..|++.|++.+|++..|.--+
T Consensus         9 ~~~I~~vLe~-IRP~l~~---dGGdvelv~v---~-~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V~   80 (88)
T d1xhja_           9 FDQVAEVIER-LRPFLLR---DGGDCTLVDV---E-DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF   80 (88)
T ss_dssp             HHHHHHHHHH-HHHHHHH---HSCEEEEEEC---C-SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             HHHHHHHHHH-hhHHHHh---CCCcEEEEec---c-CCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEEec
Confidence            4555555543 2333221   3455555566   3 589999999999999996 5578999999988999988776544


Q ss_pred             ec
Q psy16125        118 TP  119 (162)
Q Consensus       118 ~~  119 (162)
                      ..
T Consensus        81 ~~   82 (88)
T d1xhja_          81 LE   82 (88)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=95.21  E-value=0.012  Score=36.90  Aligned_cols=62  Identities=11%  Similarity=0.180  Sum_probs=47.4

Q ss_pred             EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      ++|.+....|+...   ..|+.+| +.++||.+++|++.  .+.-.-.|+++..+.+.+..++++.|+
T Consensus         4 ~tl~V~Gm~C~~C~---~~Ie~~l-~~~~GV~~v~v~~~--~~~v~v~~d~~~~~~~~i~~~i~~~Gy   65 (69)
T d2qifa1           4 KTLQVEGMSCQHCV---KAVETSV-GELDGVSAVHVNLE--AGKVDVSFDADKVSVKDIADAIEDQGY   65 (69)
T ss_dssp             EEEEEECCCSHHHH---HHHHHHH-HTSTTEEEEEEETT--TTEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred             EEEEECCccCHHHH---HHHHHHH-hcCCCceEEEEECC--CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            45666777887654   4678888 78999999999876  344455788888889899999887764

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.012  Score=37.84  Aligned_cols=66  Identities=9%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             CeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         76 NQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        76 ~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      +.-+++|.+....|+....   .|+.+| +.++|+.+++|++..  ..-.-.|++...+.+.+.+++++.|+
T Consensus         6 ~~~~~~l~V~gm~C~~C~~---~ie~~l-~~~~gv~~v~v~~~~--~~v~v~~d~~~~~~~~i~~~i~~~GY   71 (79)
T d1kvja_           6 GVNSVTISVEGMTCNSCVW---TIEQQI-GKVNGVHHIKVSLEE--KNATIIYDPKLQTPKTLQEAIDDMGF   71 (79)
T ss_dssp             TCEEEEEEEESCCSTHHHH---HHHHHH-HTTTTCSEEEEETTT--TEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred             CceEEEEEECCeecHHHHH---HHHHHH-hcCCCceEEEEECCC--CEEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4456777778888887653   577888 789999999998873  33444777888899999999987764

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=94.87  E-value=0.018  Score=36.31  Aligned_cols=63  Identities=11%  Similarity=0.210  Sum_probs=47.4

Q ss_pred             EEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         79 KVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        79 ~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      ++.|.+....|+....   .|+.+| +.+||+.+++|++.  .+.-.-.|++...+.+.+..+++..|+
T Consensus         4 t~~l~V~Gm~C~~C~~---~Ie~~l-~~~~gV~~v~v~~~--~~~~~v~~~~~~~~~~~i~~~i~~~Gy   66 (72)
T d1osda_           4 TVTLSVPGMTCSACPI---TVKKAI-SKVEGVSKVDVTFE--TRQAVVTFDDAKTSVQKLTKATADAGY   66 (72)
T ss_dssp             EEEEECTTCCSTTHHH---HHHHHH-HTSTTEEEEEEETT--TTEEEEEEETTTCCHHHHHHHHHHTTC
T ss_pred             EEEEEECCcccHHHHH---HHHHHH-HcCCCcEEEEEEcC--CCEEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4567777777877653   577888 78999999999886  333444788888888888888887664

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=94.84  E-value=0.014  Score=36.83  Aligned_cols=63  Identities=10%  Similarity=0.198  Sum_probs=46.7

Q ss_pred             EEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         79 KVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        79 ~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      +++|.+.+..|+...   ..|+++| +.++|+.+|+|.+..  ..-.-.|++...+.+.+.++++..|+
T Consensus         7 ~~~l~V~Gm~C~~C~---~~Ie~~l-~~~~gV~~v~v~~~~--~~~~v~~d~~~~~~~~i~~~i~~~Gy   69 (72)
T d1p6ta1           7 EIAMQVSGMTCAACA---ARIEKGL-KRMPGVTDANVNLAT--ETVNVIYDPAETGTAAIQEKIEKLGY   69 (72)
T ss_dssp             EEEEEEESCCSSHHH---HHHHHHH-TTSSSEEEEEEEGGG--TEEEEEECTTTSCHHHHHHHHHHHTC
T ss_pred             EEEEEECCeecHHHH---HHHHHHH-HcCCCcEEEEEEcCC--CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            566777777787654   4688888 789999999998873  22334666777788899998887664

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.012  Score=38.40  Aligned_cols=67  Identities=12%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             CCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         75 TNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        75 ~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      .+...|+|.+....|....   ..|+.+| +.++||.++.|++..  ..-.-.|++...+.+.+..+++..|+
T Consensus         6 ~~~~~v~l~V~GMtC~~C~---~~Ie~~l-~~~~GV~~v~vn~~~--~~v~v~~~~~~~~~~~i~~~I~~~Gy   72 (84)
T d1q8la_           6 AGEVVLKMKVEGMTCHSCT---STIEGKI-GKLQGVQRIKVSLDN--QEATIVYQPHLISVEEMKKQIEAMGF   72 (84)
T ss_dssp             SSCEEEEEEECCTTTCSSC---HHHHHHH-HTCTTEEEEEECSTT--TEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCeEcHHHH---HHHHHHH-hcCCCceEEEEECCC--CEEceeecccccCHHHHHHHHHHhCC
Confidence            4567777777777776643   3578888 789999999998763  22334677788888898888887775

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.52  E-value=0.01  Score=40.13  Aligned_cols=69  Identities=14%  Similarity=0.117  Sum_probs=52.7

Q ss_pred             HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchH-HHHHHHHHHHHHHhCCCceeEE
Q psy16125         39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA-TLIGLSIRVRLIRALPARFKVV  114 (162)
Q Consensus        39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~-~~I~~~I~~aL~~~lpgv~~V~  114 (162)
                      .+.|.+.|..-..|-+.   -+-|-|.-+++  +  ++.|+|.|.=.+.+||+. ..++..|+..|+..+|++..|.
T Consensus        15 ~~~I~~vL~~~IrP~l~---~dGGdv~lv~v--~--~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~   84 (92)
T d1veha_          15 VAMIKELLDTRIRPTVQ---EDGGDVIYRGF--E--DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVE   84 (92)
T ss_dssp             HHHHHHHHHHTTHHHHH---HHSCCCCEEEE--E--TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEE
T ss_pred             HHHHHHHHHHhcChHHH---HcCCceEEEEe--e--CCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceEE
Confidence            56667777666666655   34555666666  3  589999999999999996 6688999999988899987763

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=93.96  E-value=0.039  Score=34.28  Aligned_cols=60  Identities=12%  Similarity=0.177  Sum_probs=43.5

Q ss_pred             EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      |.+....|+...   ..|+.+| +.++||.+++|++.  .+.-.-.|++...+.+.+..+++..|+
T Consensus         4 l~V~GM~C~~C~---~~Ie~~l-~~~~GV~~v~V~~~--~~~v~v~~d~~~~~~~~i~~~i~~~Gy   63 (68)
T d1cpza_           4 FSVKGMSCNHCV---ARIEEAV-GRISGVKKVKVQLK--KEKAVVKFDEANVQATEICQAINELGY   63 (68)
T ss_dssp             EEESCCCSSSHH---HHHHHHH-HTSTTEEEEEEETT--TTEEEEEECTTTCCHHHHHHHHHTTSS
T ss_pred             EEECCeEcHHHH---HHHHHHH-hcCCCcEEEEEECC--CCEEEEEECCCCCCHHHHHHHHHhhCC
Confidence            344556666544   3578888 78999999999886  233344677777888899999987764

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.031  Score=35.10  Aligned_cols=62  Identities=15%  Similarity=0.163  Sum_probs=46.1

Q ss_pred             EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      ..|.+.+..|+...   ..|+.+| +.++||.+++|++..  ..-.-.|++...+.+.+..+++..|+
T Consensus         5 ~~l~V~GM~C~~C~---~~Ie~~l-~~~~GV~~v~v~~~~--~~v~v~~d~~~~~~~~i~~~i~~~Gy   66 (72)
T d2aw0a_           5 TVINIDGMTCNSCV---QSIEGVI-SKKPGVKSIRVSLAN--SNGTVEYDPLLTSPETLRGAIEDMGF   66 (72)
T ss_dssp             EEEEEECCCSHHHH---HHHHHHH-HTSTTCCCEEEETTT--TEEEEEECTTTCCHHHHHHHHHHHTS
T ss_pred             EEEEECCcccHHHH---HHHHHHH-hcCCCcEEEEEECCC--CEEEEEECCCCCCHHHHHHHHHhhCC
Confidence            45666677887654   4688888 789999999998862  32334677888888888888887664

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.15  E-value=0.05  Score=34.34  Aligned_cols=58  Identities=12%  Similarity=0.157  Sum_probs=37.0

Q ss_pred             EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      +.+.+.+++.+|      ...|+.+| .+++||.+|+|++..  +   ...=..-.+.+.+..+++..++
T Consensus         8 ~~f~V~M~C~~C------~~~Iek~l-~~~~gV~~v~vdl~~--~---~v~V~~~~~~~~i~~~I~~~G~   65 (72)
T d1qupa2           8 ATYAIPMHCENC------VNDIKACL-KNVPGINSLNFDIEQ--Q---IMSVESSVAPSTIINTLRNCGK   65 (72)
T ss_dssp             EEEECCCCSTTH------HHHHHHHH-TTCTTEEEEEEETTT--T---EEEEEESSCHHHHHHHHHHTTC
T ss_pred             EEEEEccCCHHH------HHHHHHHH-hcCCCeeEEEEECCC--C---EEEEEeeCCHHHHHHHHHHhCC
Confidence            444444455555      35688899 789999999998762  1   1111122577788888887664

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.82  E-value=0.049  Score=34.20  Aligned_cols=61  Identities=18%  Similarity=0.288  Sum_probs=40.0

Q ss_pred             EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      +.|.+....|+...   ..|+.+| +.++||.+++|++..  +.-.-.|++. .+.+.+..+++..|+
T Consensus         4 v~l~V~GM~C~~C~---~~Ie~~l-~~~~gV~~v~V~~~~--~~~~v~~~~~-~~~~~i~~~i~~~Gy   64 (72)
T d2ggpb1           4 VILAVHGMTCSACT---NTINTQL-RALKGVTKCDISLVT--NECQVTYDNE-VTADSIKEIIEDCGF   64 (72)
T ss_dssp             EEEECTTCCSSTTT---HHHHHHH-TTSTTEEEEEECTTT--CEEEEEECSS-CCHHHHHHHHHHTTC
T ss_pred             EEEEECCcccHHHH---HHHHHHH-hcCCCceEEEEECCC--CEEEEEECCC-CCHHHHHHHHHHhCC
Confidence            44445555555433   3588889 789999999998762  2223345554 467788888887664

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=91.12  E-value=0.075  Score=33.87  Aligned_cols=63  Identities=16%  Similarity=0.181  Sum_probs=45.3

Q ss_pred             EEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         79 KVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        79 ~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      ++.+.+....|+...   ..|+.+| +.++||.++.|++.  ++.-.-.|++...+.+.+..++++.++
T Consensus         3 k~~~~V~Gm~C~~C~---~~Ie~~l-~~~~gV~~v~v~~~--~~~~~v~~~~~~~~~~~i~~~i~~~Gy   65 (79)
T d1p6ta2           3 KAEFDIEGMTCAACA---NRIEKRL-NKIEGVANAPVNFA--LETVTVEYNPKEASVSDLKEAVDKLGY   65 (79)
T ss_dssp             EEEEEESSCCSSSHH---HHHHHHH-TTSSSEEECCEETT--TTEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred             EEEEEECCcccHHHH---HHHHHHH-hcCCCcEEEEEEeC--CCEEEEEECCCCCCHHHHHHHHHHHCC
Confidence            455666677776654   4578888 78999999999886  343444667777787888888877664

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=90.44  E-value=0.12  Score=33.06  Aligned_cols=67  Identities=15%  Similarity=0.244  Sum_probs=49.0

Q ss_pred             CCHHHHHHHhccCCCCCCCCCce--eecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEE
Q psy16125         37 FDSREIFDLIRNIYDPEHPLTLE--ELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVV  114 (162)
Q Consensus        37 ~t~~~I~eaL~~V~DPEl~~~IV--dLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~  114 (162)
                      ++++.|..+|..| -|-    +.  +=|-|.=+++  +  ++.|+|.|.=.+.+|+   .++..|++.|++.+|++..|+
T Consensus         3 l~ee~V~~vL~ei-rP~----l~a~dGGdvelv~i--~--~~~v~v~l~GaC~gC~---Tl~~gIe~~L~~~iPei~~V~   70 (73)
T d1th5a1           3 LNEENVEKVLNEI-RPY----LAGTGGGGLQFLMI--K--GPIVKVRLTGPAAVVR---TVRIAVSKKLREKIPSIQIVQ   70 (73)
T ss_dssp             CSHHHHHHHHTTT-HHH----HTTTTCCCCCCCEE--E--TTEEEECCCSSSSSSS---SHHHHHHHHHHHHCTTCSEEE
T ss_pred             CCHHHHHHHHHHh-ccc----ccccCCceEEEEEe--c--CCEEEEEecCCCcccc---hHHHHHHHHHHHHCCCccEEE
Confidence            5678888888652 232    22  2355665666  3  5789999998889994   788889999999999998776


Q ss_pred             E
Q psy16125        115 V  115 (162)
Q Consensus       115 V  115 (162)
                      +
T Consensus        71 ~   71 (73)
T d1th5a1          71 L   71 (73)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.97  E-value=0.28  Score=30.53  Aligned_cols=60  Identities=13%  Similarity=0.184  Sum_probs=39.2

Q ss_pred             EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      +++.+....|+...   ..|+++| +.++||..+.|++..  +.-.-.+++  .+.+.+..++++.++
T Consensus         5 ~~~~V~Gm~C~~C~---~~Ie~~l-~~~~gV~~v~v~~~~--~~~~v~~~~--~~~~~i~~~i~~~GY   64 (73)
T d1mwza_           5 YSWKVSGMDCAACA---RKVENAV-RQLAGVNQVQVLFAT--EKLVVDADN--DIRAQVESALQKAGY   64 (73)
T ss_dssp             EEEECTTCCSHHHH---HHHHHHH-HTSSSEEEEEEETTT--TEEEEEESS--CCHHHHHHHHHHHTC
T ss_pred             EEEEECCcCCHHHH---HHHHHHH-hcCCCceEEEEECCC--CEEEEEECC--CCHHHHHHHHHHcCC
Confidence            45677788888764   4688888 789999999998862  211122333  234567777666554

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

Probab=87.41  E-value=0.15  Score=31.05  Aligned_cols=59  Identities=15%  Similarity=0.244  Sum_probs=36.4

Q ss_pred             EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy16125         80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL  147 (162)
Q Consensus        80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~  147 (162)
                      ++|.++...|+...   ..|+.+| ++++|+.+|+|++..+.    -..+ .-.+.+.+..+++..|+
T Consensus         3 ~~l~V~gM~C~~C~---~~Ie~~l-~~~~gv~~v~v~~~~~~----v~v~-~~~~~~~i~~~i~~~GY   61 (64)
T d1sb6a_           3 IQLTVPTIACEACA---EAVTKAV-QNEDAQATVQVDLTSKK----VTIT-SALGEEQLRTAIASAGH   61 (64)
T ss_dssp             EEEECTTTTSSSCT---HHHHHHH-HHHCTTCEEEEETTTTE----EEEE-SSSCHHHHHHHHHHHCC
T ss_pred             EEEEECCccchhHH---HHHHHHH-hcCCCeeEEEccCCCCE----EEEc-cCCCHHHHHHHHHHcCC
Confidence            45555566665543   3577888 67899999999876321    1111 12456677777766553

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.00  E-value=0.29  Score=30.61  Aligned_cols=58  Identities=12%  Similarity=0.176  Sum_probs=35.2

Q ss_pred             eEEEEEEeCCCCCchHHHHHHHHHHHHHHhC-CCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy16125         77 QIKVNFTPTIPHCSMATLIGLSIRVRLIRAL-PARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST  146 (162)
Q Consensus        77 ~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~l-pgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~  146 (162)
                      +..+.+.+|+.+|      ...|+.+| ..+ ||+.+|+|++....    -... .-.+.+.+..+++..|
T Consensus         5 t~~f~V~MtC~~C------~~~Ie~~L-~~l~~gV~~v~v~~~~~~----v~V~-~~~~~~~i~~~i~~~G   63 (72)
T d1cc8a_           5 HYQFNVVMTCSGC------SGAVNKVL-TKLEPDVSKIDISLEKQL----VDVY-TTLPYDFILEKIKKTG   63 (72)
T ss_dssp             EEEEEECCCSHHH------HHHHHHHH-HTTTTSEEEEEEETTTTE----EEEE-ESSCHHHHHHHHHTTS
T ss_pred             EEEEEECcCcHHH------HHHHHHHH-HcCcCceEEEEEECCCCE----EEEe-ecCCHHHHHHHHHHHC
Confidence            3444454555555      34688888 677 68999999875211    1111 2256777887777655