Psyllid ID: psy16252
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 545 | 2.2.26 [Sep-21-2011] | |||||||
| Q922J9 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.787 | 0.833 | 0.344 | 7e-71 | |
| Q7ZXF5 | 515 | Fatty acyl-CoA reductase | N/A | N/A | 0.787 | 0.833 | 0.338 | 1e-70 | |
| Q66H50 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.788 | 0.834 | 0.345 | 5e-70 | |
| Q5R834 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.785 | 0.831 | 0.339 | 1e-69 | |
| Q8WVX9 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.785 | 0.831 | 0.339 | 1e-69 | |
| Q5ZM72 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.785 | 0.831 | 0.335 | 5e-67 | |
| Q0P5J1 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.796 | 0.842 | 0.332 | 1e-66 | |
| Q96K12 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.805 | 0.852 | 0.330 | 1e-64 | |
| Q7TNT2 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.796 | 0.842 | 0.332 | 1e-63 | |
| A1ZAI5 | 625 | Putative fatty acyl-CoA r | no | N/A | 0.770 | 0.672 | 0.327 | 2e-63 |
| >sp|Q922J9|FACR1_MOUSE Fatty acyl-CoA reductase 1 OS=Mus musculus GN=Far1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 268 bits (685), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 163/473 (34%), Positives = 253/473 (53%), Gaps = 44/473 (9%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT 149
S+ ++YEG IL+TGATGFLGK+L+EKLLRS PRV ++YV+VR K Q+PQ+R++++L +
Sbjct: 3 SIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPRVNSVYVLVRQKAGQTPQERVEEILSS 62
Query: 150 VAIS-LKFTCSTSKESAQA-------PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELK 201
L+ +E A P L LS +DK ++ N++FHCAAT+RF+E L+
Sbjct: 63 KLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLR 122
Query: 202 EAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISK 261
+A++ N+ AT+ ++ LA+Q KNL++F +VSTA++ RK+I+E++Y +L I
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKL--IDS 180
Query: 262 LD-VDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPI 320
L+ +DD + +L + NTY TKA AE ++ +E V I RPSIV ++WKEP
Sbjct: 181 LEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPF 240
Query: 321 PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHKD 379
PGWIDN GP+GL A G++RT + AD+VP D+VVN + A W +G R
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNR---- 296
Query: 380 PSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPSSQTRTNLLQDGQGSVRS 431
P + +YN NP WGE F L++ + P+ +N L
Sbjct: 297 PRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHL--------- 347
Query: 432 RTIQYPGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGR-------LSAREWEWDNSN 484
+ + + V A D R S + + RL + ++ W W+ N
Sbjct: 348 --LYHYWIAVSHKAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTDN 405
Query: 485 VQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
V + + D+ F ++R L W +Y+ Y GT + L +++ P R+
Sbjct: 406 VNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARK 458
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Mus musculus (taxid: 10090) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 2 |
| >sp|Q7ZXF5|FACR1_XENLA Fatty acyl-CoA reductase 1 OS=Xenopus laevis GN=far1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 160/473 (33%), Positives = 253/473 (53%), Gaps = 44/473 (9%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRI------ 143
S+ +FY+G +L+TGATGF+GK+L+EKLLRS P K +YV+VR K Q P++R+
Sbjct: 3 SIPEFYQGKNVLITGATGFMGKVLLEKLLRSCPNTKAVYVLVRHKAGQKPRERVAEMMSC 62
Query: 144 ---DKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEEL 200
DK+ D + + S E Q P+L +S +D+ + +++VFHCAAT+RF+E L
Sbjct: 63 KLFDKLRDEQPDCAQKVIAISSELTQ-PELDMSKEDQDTLIDCIDIVFHCAATVRFNESL 121
Query: 201 KEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKIS 260
++A++ N+ AT+ +L LA++ K L++F +VSTA++N RK IEE++Y +L++ S
Sbjct: 122 RDAMQLNVIATRQLLYLAQKMKKLEVFIHVSTAYANCNRKQIEEVVYPPPVDPKKLIE-S 180
Query: 261 KLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPI 320
+DD + +L + NTYT TKA AE ++ +E + I RPSIV ++WKEP
Sbjct: 181 LEWMDDSLVNDITPKLIGDRPNTYTYTKALAEYVVQQEGSKLNIAIVRPSIVGASWKEPF 240
Query: 321 PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHKD 379
PGWIDN GP+GL A G++RT + AD++P D+VVN + A W +G R
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNNAVADLIPVDVVVNTTLAAAWYSGVNR---- 296
Query: 380 PSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPSSQTRTNLLQDGQGSVRS 431
P + +YN NP WGE F L++ + P+ +N L
Sbjct: 297 PKNMLVYNCTTGGTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHL--------- 347
Query: 432 RTIQYPGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGR-------LSAREWEWDNSN 484
+ + + V A+ D R S + + RL R ++ W W+N N
Sbjct: 348 --LYHYWIAVSHKAPALLYDVYLRITGRSPRMMKTITRLHRAMMLLEYFTSNSWVWNNEN 405
Query: 485 VQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
+ + + D+ F F++R L W +Y+ Y GT + L +++ P R+
Sbjct: 406 TNMLMSQLSPEDKKVFNFDVRQLHWAEYMENYCMGTKKYVLNEEMSGLPAARK 458
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q66H50|FACR1_RAT Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN=Far1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 257/472 (54%), Gaps = 42/472 (8%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKML-- 147
S+ ++YEG IL+TGATGFLGK+L+EKLLRS P+V ++YV+VR K Q+PQ+R++++L
Sbjct: 3 SIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSG 62
Query: 148 -------DTVAISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEEL 200
D + + + E Q P L LS +DK ++ N++FHCAAT+RF+E L
Sbjct: 63 KLFDRLRDENPDFRQKIIAINSELTQ-PKLALSEEDKEIIIDSTNVIFHCAATVRFNENL 121
Query: 201 KEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKIS 260
++A++ N+ AT+ ++ LA+Q KNL++F +VSTA++ RK+I+E++Y +L I
Sbjct: 122 RDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKL--ID 179
Query: 261 KLD-VDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEP 319
L+ +DD + +L + NTY TKA AE ++ +E V I RPSIV ++WKEP
Sbjct: 180 SLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEP 239
Query: 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHK 378
PGWIDN GP+GL A G++RT + AD+VP D+VVN + A W +G R
Sbjct: 240 FPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNR--- 296
Query: 379 DPSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPSSQTRTN--LLQDGQG- 427
P + +YN NP WGE F T L + + P + +N +L +G
Sbjct: 297 -PRNIMVYNCTTGSTNPFHWGEVGDYLNHSFKTNPLNQVFRHPYVKFYSNNLMLHYWKGV 355
Query: 428 --SVRSRTIQYPGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGRLSAREWEWDNSNV 485
+V + + G Q+ + TR + ++Y ++ W W+ NV
Sbjct: 356 KHTVPALLLDLALRLTG--QKPWMMKTITRLHKAMVFLEY-------FTSNSWVWNTDNV 406
Query: 486 QSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
+ + D+ F ++R L W +Y+ Y GT + L +++ P R+
Sbjct: 407 NMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARK 458
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q5R834|FACR1_PONAB Fatty acyl-CoA reductase 1 OS=Pongo abelii GN=FAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 161/474 (33%), Positives = 252/474 (53%), Gaps = 46/474 (9%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRI------ 143
S+ ++YEG +L+TGATGFLGK+L+EKLLRS P+V ++YV+VR K Q+PQ+R+
Sbjct: 3 SIPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSG 62
Query: 144 ---DKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEEL 200
D++ D + + + E Q P L LS +DK ++ N++FHCAAT+RF+E L
Sbjct: 63 KLFDRLRDENPDFREKIIAINSELTQ-PKLALSEEDKEVIIESTNIIFHCAATVRFNENL 121
Query: 201 KEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKIS 260
++A++ N+ AT+ ++ LA+Q KNL++F +VSTA++ RK+I+E++Y +L I
Sbjct: 122 RDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKL--ID 179
Query: 261 KLD-VDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEP 319
L+ +DD + +L + NTY TKA AE ++ +E V I RPSIV ++WKEP
Sbjct: 180 SLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEP 239
Query: 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHK 378
PGWIDN GP+GL A G++RT + AD+VP D+VVN + A W +G R
Sbjct: 240 FPGWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNR--- 296
Query: 379 DPSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPSSQTRTNLLQDGQGSVR 430
P + +YN NP WGE F L++ + P+ +N L
Sbjct: 297 -PRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHL-------- 347
Query: 431 SRTIQYPGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGR-------LSAREWEWDNS 483
+ + + V A D R S + + RL + ++ W W+
Sbjct: 348 ---LYHYWIAVSHKAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTD 404
Query: 484 NVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
NV + + D+ F ++R L W +Y+ Y GT + L +++ P R+
Sbjct: 405 NVNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARK 458
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q8WVX9|FACR1_HUMAN Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 161/474 (33%), Positives = 252/474 (53%), Gaps = 46/474 (9%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRI------ 143
S+ ++YEG +L+TGATGFLGK+L+EKLLRS P+V ++YV+VR K Q+PQ+R+
Sbjct: 3 SIPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSG 62
Query: 144 ---DKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEEL 200
D++ D + + + E Q P L LS +DK ++ N++FHCAAT+RF+E L
Sbjct: 63 KLFDRLRDENPDFREKIIAINSELTQ-PKLALSEEDKEVIIDSTNIIFHCAATVRFNENL 121
Query: 201 KEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKIS 260
++A++ N+ AT+ ++ LA+Q KNL++F +VSTA++ RK+I+E++Y +L I
Sbjct: 122 RDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKL--ID 179
Query: 261 KLD-VDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEP 319
L+ +DD + +L + NTY TKA AE ++ +E V I RPSIV ++WKEP
Sbjct: 180 SLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEP 239
Query: 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHK 378
PGWIDN GP+GL A G++RT + AD+VP D+VVN + A W +G R
Sbjct: 240 FPGWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNR--- 296
Query: 379 DPSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPSSQTRTNLLQDGQGSVR 430
P + +YN NP WGE F L++ + P+ +N L
Sbjct: 297 -PRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHL-------- 347
Query: 431 SRTIQYPGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGR-------LSAREWEWDNS 483
+ + + V A D R S + + RL + ++ W W+
Sbjct: 348 ---LYHYWIAVSHKAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTE 404
Query: 484 NVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
NV + + D+ F ++R L W +Y+ Y GT + L +++ P R+
Sbjct: 405 NVNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARK 458
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q5ZM72|FACR1_CHICK Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 159/474 (33%), Positives = 248/474 (52%), Gaps = 46/474 (9%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID----- 144
S+ ++YEG +L+TGATGF+GK+L+EKLLRS P+VK +YV+VR K Q+P+ RI+
Sbjct: 3 SIPEYYEGKNVLLTGATGFMGKVLLEKLLRSCPKVKAVYVLVRPKAGQTPEARIEEITSC 62
Query: 145 KMLDTVA-----ISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEE 199
K+ D + K TS+ + P+L LS K + +N++FHCAAT+RF+E
Sbjct: 63 KLFDRLREEQPDFKEKIIVITSELTQ--PELDLSNPVKEKLIECINIIFHCAATVRFNET 120
Query: 200 LKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKI 259
L++A++ N+ +T+ +L LA+Q NL++F +VSTA++ RK+IEE++Y +L+
Sbjct: 121 LRDAVQLNVLSTKQLLSLAQQMTNLEVFMHVSTAYAYCNRKHIEEVVYPPPVDPKKLMD- 179
Query: 260 SKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEP 319
S +DD + +L + NTYT TKA AE ++ +E I RPSIV ++WKEP
Sbjct: 180 SLEWMDDSLVNDITPKLIGDRPNTYTYTKALAEYVVQQEGARLNTAIIRPSIVGASWKEP 239
Query: 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHK 378
PGWIDN GP+GL A G++RT AD+VP D+VVN + A W +G R
Sbjct: 240 FPGWIDNFNGPSGLFIAAGKGILRTMRASNGAVADLVPVDVVVNMTLAAAWYSGVNR--- 296
Query: 379 DPSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPSSQTRTNLLQDGQGSVR 430
P + +YN NP W E F L++ + P+ +N L
Sbjct: 297 -PRNIMVYNCTTGGTNPFHWSEVEYHVISTFKRNPLEQAFRRPNVNLTSNHL-------- 347
Query: 431 SRTIQYPGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGR-------LSAREWEWDNS 483
+ + + V A D R S + + RL + ++ W W+
Sbjct: 348 ---LYHYWIAVSHKAPAFLYDIYLRITGRSPRMMKTITRLHKAMVFLEYFTSNSWIWNTE 404
Query: 484 NVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
N+ + + D+ F F++R L W +Y+ Y GT + L +++ P R+
Sbjct: 405 NMTMLMNQLSPEDKKTFNFDVRQLHWAEYMENYCMGTKKYVLNEEMSGLPAARK 458
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q0P5J1|FACR2_BOVIN Fatty acyl-CoA reductase 2 OS=Bos taurus GN=FAR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/460 (33%), Positives = 239/460 (51%), Gaps = 26/460 (5%)
Query: 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIS 153
FY G IL+TGATGF+GK+L+EKL R+ P +K +Y++VR K+ Q+ QQR+ ++LD+
Sbjct: 7 FYGGKSILITGATGFMGKVLMEKLFRTSPDLKVVYILVRPKQGQTLQQRVFQILDSKLFE 66
Query: 154 -LKFTCSTSKESAQA-------PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIR 205
+K C E +A D +S +D + + S N++FHCAAT+RFD+ L+ A++
Sbjct: 67 KVKEVCPNVHEKIRAISADLNQNDFAISKEDMKELLSHTNIIFHCAATVRFDDHLRHAVQ 126
Query: 206 TNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVD 265
N+ ATQ +L +A Q L+ F ++STAFSN K+I+E++Y +++ S +D
Sbjct: 127 LNVTATQQLLLMASQMPKLEAFIHISTAFSNCNLKHIDEVVYPCPVEPKKIID-SMEWLD 185
Query: 266 DPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWID 325
D E +L + NTYT TKA E ++ +E + I RPSI+ +TW+EP PGW+D
Sbjct: 186 DAIIDEITPKLIGDWPNTYTYTKALGEVVVQQEGGNLNIAIIRPSIMGATWQEPFPGWVD 245
Query: 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385
NL GP+GL+ A G +R+ P AD++PAD VVN + W + H+ S L +
Sbjct: 246 NLNGPSGLIIAAGKGFLRSIRATPMAVADLIPADTVVNLTLAVGW--YTAVHRPKSTL-V 302
Query: 386 YNYVNSKDNPLTWGEFITKSLKEGVKIPSSQ---------TRTNLLQDGQGSVRSRTIQY 436
Y+ + NP WG+ + L KIP + T N+ +V R
Sbjct: 303 YHCTSGNLNPCNWGKMGLQVLATFEKIPFERAFRRPNADFTTNNITTHYWNAVSHRA--- 359
Query: 437 PGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGRLSAREWEWDNSNVQSMWTLVPAGD 496
P + R P + S L R WEW N + + + + D
Sbjct: 360 PAIIYDFYLRLTGRKPRMTKLMNRLLRTLS--MLEYFVNRSWEWSTYNTEMLMSELSPED 417
Query: 497 RVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLDPVTRQK 536
+ F F++R L+W +Y+ YV G + L++ + + K
Sbjct: 418 QRVFNFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIPEAK 457
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q96K12|FACR2_HUMAN Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 242/463 (52%), Gaps = 24/463 (5%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT 149
++ FY G IL+TGATGFLGK+L+EKL R+ P +K IY++VR K Q+ QQR+ ++LD+
Sbjct: 3 TIAAFYGGKSILITGATGFLGKVLMEKLFRTSPDLKVIYILVRPKAGQTLQQRVFQILDS 62
Query: 150 VAIS-LKFTCSTSKESAQA-------PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELK 201
+K C E +A D +S +D + + S N++FHCAAT+RFD+ L+
Sbjct: 63 KLFEKVKEVCPNVHEKIRAIYADLNQNDFAISKEDMQELLSCTNIIFHCAATVRFDDTLR 122
Query: 202 EAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISK 261
A++ N+ AT+ +L +A Q L+ F ++STA+SN K+I+E+IY ++ I
Sbjct: 123 HAVQLNVTATRQLLLMASQMPKLEAFIHISTAYSNCNLKHIDEVIYPCPVEPKKI--IDS 180
Query: 262 LD-VDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPI 320
L+ +DD E +L + N YT TKA E ++ +E++ + I RPSIV +TW+EP
Sbjct: 181 LEWLDDAIIDEITPKLIRDWPNIYTYTKALGEMVVQQESRNLNIAIIRPSIVGATWQEPF 240
Query: 321 PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDP 380
PGW+DN+ GP G++ G +R P AD++P D VVN ++ W + H+
Sbjct: 241 PGWVDNINGPNGIIIATGKGFLRAIKATPMAVADVIPVDTVVNLMLAVGW--YTAVHRPK 298
Query: 381 SCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQTRTNLLQDGQGSVRSRTIQYPGVG 440
S L +Y+ + NP W + + L KIP R + + S T QY
Sbjct: 299 STL-VYHITSGNMNPCNWHKMGVQVLATFEKIPFE--RPFRRPNANFTSNSFTSQYWN-A 354
Query: 441 VGQLQRAVHVDPSTRGGPGSISVQYSGPRLGRLSA-------REWEWDNSNVQSMWTLVP 493
V A+ D R + RL R + R WEW N + + + +
Sbjct: 355 VSHRAPAIIYDCYLRLTGRKPRMTKLMNRLLRTVSMLEYFINRSWEWSTYNTEMLMSELS 414
Query: 494 AGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLDPVTRQK 536
D+ F F++R L+W +Y+ YV G + L++ + + + K
Sbjct: 415 PEDQRVFNFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIPKAK 457
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q7TNT2|FACR2_MOUSE Fatty acyl-CoA reductase 2 OS=Mus musculus GN=Far2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 153/460 (33%), Positives = 235/460 (51%), Gaps = 26/460 (5%)
Query: 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIS 153
FY IL+TGATGFLGK+L+EKL R+ P +K IY++VR K Q+ Q+R+ ++L++
Sbjct: 7 FYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSKLFE 66
Query: 154 -LKFTCSTSKESAQ-------APDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIR 205
+K C E + D +S +D + + S N++FHCAAT+RFD L+EA++
Sbjct: 67 KVKEVCPNVHEKIRPISADLNQRDFAISKEDVQELLSCTNIIFHCAATVRFDAHLREAVQ 126
Query: 206 TNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVD 265
N+ ATQ +L +A Q L+ F ++STAFSN +I+E+IY +++ S +D
Sbjct: 127 LNVTATQQLLLMASQMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIID-SMEWLD 185
Query: 266 DPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWID 325
D +E +L + NTYT TKA E ++ +E+ V I RPSIV +TW+EP PGW+D
Sbjct: 186 DSIIEEITPKLIGDRPNTYTYTKALGEIVVQQESGNLNVAIVRPSIVGATWQEPFPGWVD 245
Query: 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385
NL GP+GL+ G +R+ P AD++P D VVN I W + H+ S L I
Sbjct: 246 NLNGPSGLIIATGKGFLRSIKATPMAVADVIPVDTVVNLTIAVGW--YTAVHRPKSTL-I 302
Query: 386 YNYVNSKDNPLTWGEFITKSLKEGVKIP---------SSQTRTNLLQDGQGSVRSRTIQY 436
Y+ + NP W + + L KIP + T +N +V R
Sbjct: 303 YHSTSGNLNPCNWYKMGLQVLATIEKIPFESAFRRPNADFTTSNFTTHYWNTVSHRV--- 359
Query: 437 PGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGRLSAREWEWDNSNVQSMWTLVPAGD 496
P + R P + S L WEW +N + + + + D
Sbjct: 360 PAIIYDFYLRLTGRKPRMLKLMNRLLKTIS--MLEYFINHSWEWSTNNTEMLLSELSPED 417
Query: 497 RVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLDPVTRQK 536
+ F F++R L+W +Y+ YV G + L++ L + + K
Sbjct: 418 QRVFNFDVRQLNWLEYIENYVLGVKKYLLKEDLAGIPKAK 457
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|A1ZAI5|FACR1_DROME Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/446 (32%), Positives = 233/446 (52%), Gaps = 26/446 (5%)
Query: 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTV 150
+ FY G + +TG TGF+GK+L+EKLLRS P ++ IY+++R K+ Q R+ ++L+
Sbjct: 119 IAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLTELLNAP 178
Query: 151 AISLKFTCSTSKESAQ---------APDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELK 201
KE ++ + +LG+S D+ L+ V++VFH AAT++FDE+LK
Sbjct: 179 LFE-SLRQEKPKELSKVIPISGDITSEELGISEKDQNLLCRNVSVVFHSAATVKFDEKLK 237
Query: 202 EAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISK 261
++ NM T+ +++L + +L +VSTA+ N R ++ E+IY + +++ +
Sbjct: 238 LSVTINMLGTKRLVELCHRMLSLDALIHVSTAYCNCDRTDVSEVIYAPPYNPDDIISLIN 297
Query: 262 LDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIP 321
+D Q T RL + NTYT TKA AE +L +EA PV I RPSIV ++ EP
Sbjct: 298 WLPEDILDQLT-PRLIGKRPNTYTFTKALAEHMLLKEAGNLPVAIVRPSIVTASLNEPFA 356
Query: 322 GWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPS 381
GW+DN GPTGLV+ G+ RT + + + AD+VP D+V+N +I A W R +
Sbjct: 357 GWVDNFNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDIVINLMIAAAWRTATRKSNN-- 414
Query: 382 CLPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQTRTNLLQDGQGSVR-SRTIQYPGVG 440
L IYN + NP+ W EF+ ++ K P L G +R +R +
Sbjct: 415 -LLIYNCCTGQRNPIIWSEFVKHAMTSVRKHPLE----GCLWYPTGDLRMNRPMNTLNCI 469
Query: 441 VGQLQRAVHVDPSTR---GGPGSISVQYSGPR----LGRLSAREWEWDNSNVQSMWTLVP 493
A +D R P ++VQ + L + R+W + + NV ++ +
Sbjct: 470 AKHFLPAYILDGVARIMGKKPFVVNVQNKIAKAVECLEYFATRQWRFKDDNVHALLHTLS 529
Query: 494 AGDRVRFPFNIRDLDWDDYLRAYVRG 519
DR F F++R ++WD Y+ YV G
Sbjct: 530 PKDREIFVFDVRHINWDKYVERYVLG 555
|
Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 545 | ||||||
| 195129697 | 506 | GI13956 [Drosophila mojavensis] gi|19392 | 0.812 | 0.875 | 0.367 | 4e-78 | |
| 300116409 | 541 | uncharacterized protein LOC411983 [Apis | 0.855 | 0.861 | 0.353 | 7e-78 | |
| 340709736 | 583 | PREDICTED: putative fatty acyl-CoA reduc | 0.838 | 0.783 | 0.366 | 2e-77 | |
| 195022883 | 511 | GH17190 [Drosophila grimshawi] gi|193899 | 0.822 | 0.876 | 0.370 | 3e-77 | |
| 328722128 | 505 | PREDICTED: putative fatty acyl-CoA reduc | 0.8 | 0.863 | 0.366 | 4e-77 | |
| 322803051 | 530 | hypothetical protein SINV_00151 [Solenop | 0.803 | 0.826 | 0.378 | 9e-77 | |
| 350420565 | 549 | PREDICTED: putative fatty acyl-CoA reduc | 0.838 | 0.832 | 0.362 | 2e-76 | |
| 332030738 | 537 | Putative fatty acyl-CoA reductase [Acrom | 0.862 | 0.875 | 0.359 | 1e-74 | |
| 270008642 | 516 | hypothetical protein TcasGA2_TC015188 [T | 0.790 | 0.835 | 0.334 | 2e-74 | |
| 91084633 | 522 | PREDICTED: similar to conserved hypothet | 0.790 | 0.825 | 0.334 | 3e-74 |
| >gi|195129697|ref|XP_002009292.1| GI13956 [Drosophila mojavensis] gi|193920901|gb|EDW19768.1| GI13956 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 171/465 (36%), Positives = 259/465 (55%), Gaps = 22/465 (4%)
Query: 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKML-DTVAI 152
F+ + I +TG TGFLGK+LI KLL S P + TIY++VR K N+S R+D+M D V
Sbjct: 20 FFNKSNIFITGGTGFLGKILINKLLASCPALNTIYLLVRTKNNESVDARLDEMFADPVFE 79
Query: 153 SLKFTCSTSKESAQA-------PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIR 205
SLK + +A P LGL+ +D++L+ V++VFH AAT+RFDE+LK A++
Sbjct: 80 SLKQVSTKYTLHLKAIAGDCLKPGLGLNSNDRQLLIDHVDVVFHMAATVRFDEKLKRAVK 139
Query: 206 TNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVD 265
N+ T ++ L K+ K LK +VSTA+++ R+ IEE +Y + L+ +++ +
Sbjct: 140 INVHGTYDIMQLCKEMKKLKSVVHVSTAYTHCPRRTIEEKLYSTQNNPKSLMLMAEY-IP 198
Query: 266 DPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWID 325
D L + NTYT TKA AE ++ PV +FRP IVIST++EP+ GWID
Sbjct: 199 DKLLDYVTPILLGKWPNTYTFTKAVAEDVIRVYTGILPVGVFRPGIVISTYQEPVSGWID 258
Query: 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCL-- 383
N YGPTG + GA G++RT +P A++VP D VN++I A W+ +ER H CL
Sbjct: 259 NFYGPTGAIAGAGTGLIRTLQCNPKALANMVPVDFCVNSMIAASWDIYER-HNAKKCLAD 317
Query: 384 -PIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQ-----TRTNLLQDGQGSVRSRTIQY- 436
P+YN+ +N LTWGEF TK+ K G+ P+S+ + +N + + Y
Sbjct: 318 IPVYNFCTPNENQLTWGEFTTKNTKYGLMYPTSKAIWYLSYSNTTNKVSHMLSICLLHYL 377
Query: 437 PGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGRLSAREWEWDNSNVQSMWTLVPAGD 496
P + + + +P I + + S R+W++ NVQS+W+ + D
Sbjct: 378 PALFIDFFCLCIGKEPRLLNTYKKIHKFIN--VISHFSTRDWDFHIDNVQSLWSRMSNID 435
Query: 497 RVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLDPVTRQKA-WKR 540
+ F F++R LDWD YL+ Y RG + L+D L+ + + W R
Sbjct: 436 KTEFFFDMRQLDWDFYLQQYFRGIRKYLLKDPLETIPKALVKWNR 480
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|300116409|ref|NP_001177849.1| uncharacterized protein LOC411983 [Apis mellifera] gi|298569767|gb|ADI87412.1| putative fatty acyl-CoA reductase [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 183/518 (35%), Positives = 280/518 (54%), Gaps = 52/518 (10%)
Query: 51 AKKNQSPQQRIDKMLDTVAIIELIRNRPNQTIMGTASPPSLDDFYEGAEILMTGATGFLG 110
K N SP +R L + I+ +S + +FY G I +TG TGF+G
Sbjct: 20 CKINDSPMER------------LTESDRCDLILEKSSLSPIQNFYNGQSIFVTGGTGFMG 67
Query: 111 KLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIS--------LKFTCSTSK 162
K+LIEKLLR P + IY++VR KK + QRI+++ D + ++
Sbjct: 68 KILIEKLLRECPGISFIYMLVRPKKGKDMHQRIEELFDDPLFNKLKEKHPKFRYQIVAIA 127
Query: 163 ESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCK 222
P LGLS D++++T +V++VFH AAT+RFDE++K A+ N+ + + M+DL K+
Sbjct: 128 GDCVQPGLGLSSADRQMITREVSIVFHVAATVRFDEKMKLAVPINVRSPKEMIDLCKEIS 187
Query: 223 NLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMN 282
LK F +VSTA++N IEE IY+A ++L+ I +DD ++ +L N
Sbjct: 188 YLKSFVHVSTAYANCPHDLIEEKIYEAPMDANKLVTIIDY-MDDKLVEDITPKLLGAWPN 246
Query: 283 TYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVV 342
TYT TKA AE ++ +EA P+ IFRP+IVIST++EP+ GWIDNLYGPTG+ GA G++
Sbjct: 247 TYTFTKAIAESVIVKEAGELPIGIFRPAIVISTYREPVQGWIDNLYGPTGVAAGAGTGIL 306
Query: 343 RTFLVDPDVKADIVPADLVVNALICAPWNGHER-----FHKDPSCLPIYNYVNSKDNPLT 397
R+ D ++A++VP DL VNALI + W+ +R K+ + +P+YNYV SKDNP+T
Sbjct: 307 RSIHCDGSIQANVVPGDLAVNALIVSAWDVADRRKSTISKKEKNDIPVYNYV-SKDNPIT 365
Query: 398 WGEFITKSLKEGVKIPSSQT------RTN-------LLQDGQGSVRSRTIQYPGVGVGQL 444
+ E S K G++ P+S+ R N + + + I + +G+
Sbjct: 366 YDELKVLSEKYGLEFPTSRAMWYYSFRNNKYKIIHLIYVYLLHLLPALLIDTVMICLGKQ 425
Query: 445 QRAVHVDPSTRGGPGSISVQYSGPRLGRLSAREWEWDNSNVQSMWTLVPAGDRVRFPFNI 504
R + V I+ + +EW++ N NV+ + + DR F +I
Sbjct: 426 PRMLKVYKKIHKFMSVINY---------FTVKEWKFANDNVKVLINKLSEEDRENFACDI 476
Query: 505 RDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQKAWKR 540
+DWD Y R YVRG ++ ++D LD P R K W+R
Sbjct: 477 TQVDWDHYFRTYVRGLRIYLIKDSLDTLPQARIK-WQR 513
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340709736|ref|XP_003393458.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 182/497 (36%), Positives = 278/497 (55%), Gaps = 40/497 (8%)
Query: 72 ELIRNRPNQTIMGTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131
L+R+ I+ ++ + FY G I +TG TGF+GKLLIEKLLR P + IY++V
Sbjct: 63 HLVRSDRCDLILEQSNLSPIQQFYNGQSIFITGGTGFVGKLLIEKLLRECPGISFIYLLV 122
Query: 132 RAKKNQSPQQRIDKMLDTVAISL------KF---TCSTSKESAQAPDLGLSPDDKRLVTS 182
R KK + QRI+++ D KF + + + Q P LG+SP D++ +T
Sbjct: 123 RPKKGKDMHQRIEEIFDDPLFGKVKEKQPKFRHQIVAIAGDCGQ-PGLGISPADRQTITR 181
Query: 183 KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNI 242
+V++VFH AAT+RFDE++K A+ N+ + + ++DL K+ LK F +VSTA++N R +I
Sbjct: 182 EVSIVFHVAATVRFDEKMKLAVPINVRSPKDVMDLCKEISYLKAFIHVSTAYANCTRTHI 241
Query: 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFF 302
EE +Y+A +L I + +D+ +E RL NTYT TKA AE ++ ++A
Sbjct: 242 EEKVYEAPIDGDKLATIVEY-MDEKLIEEITPRLLGAWPNTYTYTKAVAEGIIVKQAGDL 300
Query: 303 PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVV 362
PV IFRP IVIST++EP+ GWIDNLYGPTG+ GA GV+R+ D ++A++VP DL V
Sbjct: 301 PVGIFRPGIVISTYQEPVRGWIDNLYGPTGVAAGAGTGVLRSIHCDGSIEANVVPGDLTV 360
Query: 363 NALICAPWNGHER-----FHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQT 417
NALI W+ R + + +P+YNYV SKDNP+T+ + S K G++ P+S+
Sbjct: 361 NALIACAWDVANRRKSATTKERENDIPVYNYV-SKDNPITYDQLKLLSEKYGLEFPTSRA 419
Query: 418 ------RTNLLQDGQGSVRSRTIQYPGVGVGQLQRAVHVDPSTR---GGPGSISVQYSGP 468
R N + R I V + L A+ +D T P + +
Sbjct: 420 IWYYSFRNN---------KHRIIHLMYVYLLHLLPALLIDTVTLCLGKQPRMLKIYKKIH 470
Query: 469 R----LGRLSAREWEWDNSNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHH 524
+ L S EW++ N N++ + + DR F +I D+DWD Y R Y+RG ++
Sbjct: 471 KFMDVLNYFSIHEWKFSNDNIKELLNKMTEEDRENFACDITDIDWDQYFRTYIRGIRMYL 530
Query: 525 LQDKLDPVTRQK-AWKR 540
++D LD + + + W+R
Sbjct: 531 IKDPLDTLPKARIKWQR 547
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195022883|ref|XP_001985656.1| GH17190 [Drosophila grimshawi] gi|193899138|gb|EDV98004.1| GH17190 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 268/480 (55%), Gaps = 32/480 (6%)
Query: 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAI 152
F++G+ I +TG TGFLGK+LI KLL S +K IY++VR KKN+S + R+D++ D V
Sbjct: 13 FFDGSNIFITGGTGFLGKILISKLLTSCTGIKKIYLLVRHKKNKSVETRVDEIFDDPVFE 72
Query: 153 SLKFTCSTSKESAQA-------PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIR 205
+LK T + P LGLS +D++++T V++VFH AAT+RFDE+LK AI+
Sbjct: 73 TLKRTSVKYSSRIKGIYGDCLQPGLGLSLNDRKMLTDCVHIVFHMAATVRFDEKLKTAIK 132
Query: 206 TNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVD 265
N+ A +++L K+ KNLK ++STA+++ RK IEE +Y+ + L+ +++ +
Sbjct: 133 INVDAAFDVINLCKEMKNLKSVVHISTAYTHCPRKTIEEKLYQTLSDAKSLMLMAEC-IP 191
Query: 266 DPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWID 325
+ + +L + NTYT TKA AE ++ + PV +FRP IVIST+++P+ GWID
Sbjct: 192 EKLLEHVTSKLLGQWPNTYTFTKAVAEDVIRISSDRLPVGVFRPGIVISTYQDPVCGWID 251
Query: 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKD--PSC- 382
N YGPTG + GA GV+RT +P A++VP DL VN++I A W+ +ER D C
Sbjct: 252 NFYGPTGAIAGAGTGVLRTLRCNPKAIANMVPVDLCVNSMIAASWDIYERQKCDNISHCS 311
Query: 383 -------LPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQTRTNLLQDG--QGSVRSRT 433
+P+YN+ + DN LTWGEF TK+ K G+ PS + L +V +
Sbjct: 312 PIKTTGNIPVYNFCTTSDNQLTWGEFTTKTAKYGLMYPSLKAIWYLCYSNTTNKAVHMLS 371
Query: 434 IQY----PGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGRLSAREWEWDNSNVQSMW 489
I + P + L P R V + S R+W++ NVQ++W
Sbjct: 372 ICFLHYLPALVFDILCLCFGKKP--RLLNTYKKVHKFMNVIAYFSLRDWDFKIDNVQNLW 429
Query: 490 TLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLDPVTRQKA-WKR----HRSL 544
+ + DR F F++ LDWD +L+ Y RG + L D LD + W R H+SL
Sbjct: 430 SRMTNFDRHTFFFDMNQLDWDFFLQQYFRGIRQYLLNDPLDTIPEAMVRWNRLYWLHQSL 489
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328722128|ref|XP_001945465.2| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 269/477 (56%), Gaps = 41/477 (8%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKML-- 147
++ +F++ + +TG TGFLGKL++ KL+RS P++ IY++VR KK ++ +R++ +
Sbjct: 7 NIQEFFKNKSVFVTGGTGFLGKLIVNKLIRSCPQINHIYLLVRDKKGKNAHERLEDIFNM 66
Query: 148 ----DTVAISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEA 203
D A +LK + + +QA DLGLS +D ++ +VN++FH AAT+RFDE L A
Sbjct: 67 PIFKDIDATTLKKISALRGDCSQA-DLGLSVEDLNMLIKEVNVIFHSAATVRFDERLDIA 125
Query: 204 IRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLD 263
I N+ + ++ LA + +NL + +VSTAFSN + K IEE Y +Y +L+ + K
Sbjct: 126 IGINVIGAREIVKLAHKVENLASYLHVSTAFSNCHNKRIEEKFYNLPYNYEKLIHLYKTK 185
Query: 264 VDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGW 323
+ ++ + L NTY +TKAAAEQL+ EA+ PV I RP+IVI+T EP+PGW
Sbjct: 186 SSNI-LEKMKPFLLGPMPNTYVMTKAAAEQLIKREAKGLPVTIVRPAIVIATANEPLPGW 244
Query: 324 IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHK----- 378
IDNLYGPTG+VTG G++++ D + D+VPADL VNALI A W+ H R+ +
Sbjct: 245 IDNLYGPTGIVTGVMTGIIKSLPCDLNAVTDLVPADLTVNALIAASWDTHVRYCRAGPSE 304
Query: 379 -------DPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQTR--TNLLQDGQGSV 429
DP I+N+V+S +NPLTW F T + + P+++ L+ + +
Sbjct: 305 SIENHTDDPR---IFNFVSSPENPLTWRIFSTTLMYYILHRPTAKAMWYPTLIMNASVFL 361
Query: 430 RSRTIQYPGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGR-------LSAREWEWDN 482
T+ L V + G + QY ++GR S REW + N
Sbjct: 362 HKITVLILHYLPAFLLDLVFI---CTGNKLRLVDQYK--KIGRFTDILEYFSTREWIFSN 416
Query: 483 SNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHL---QDKLDPVTRQK 536
NVQS+W + D+ FPF+I+ + W++YL Y +G + L QDKL P R++
Sbjct: 417 KNVQSLWNSLNNDDQTLFPFDIKKMHWEEYLDTYHKGIMTFLLKEGQDKL-PEARKR 472
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322803051|gb|EFZ23139.1| hypothetical protein SINV_00151 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 180/476 (37%), Positives = 276/476 (57%), Gaps = 38/476 (7%)
Query: 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTV 150
+ +FY G I +TG TGF+GKLLIEK+LR+ P V +IY++VR KK + QR +++ D
Sbjct: 39 IQEFYYGQTIFITGGTGFMGKLLIEKILRTCPGVTSIYLLVRPKKGKDVHQRTEEIFDD- 97
Query: 151 AISLKFTCSTSKESAQ---------APDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELK 201
A+ +K K Q P+LG+S D+ + +V++VFH AAT+RFDE+LK
Sbjct: 98 AVFMKLRDELPKFRHQIVAIAGDCSQPNLGMSAQDRATLIREVSIVFHVAATVRFDEKLK 157
Query: 202 EAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISK 261
A+ N+ +T+ +++L K+ NLK F +VSTA++N + IEE Y+ +L+ + +
Sbjct: 158 LAVPINVRSTRDVVNLCKEITNLKSFIHVSTAYANCPQSLIEEKFYEPPMDSDKLIALME 217
Query: 262 LDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIP 321
V+D ++ +L + NTYT TKA AE ++ ++A P IFRP+IVIST++EP+
Sbjct: 218 C-VEDKLAEDITPQLLGKWPNTYTFTKAVAENVIRKQAGDLPAGIFRPAIVISTYQEPMR 276
Query: 322 GWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW---NGHERFHK 378
GWIDNLYGPTG+ GA G++R+ D V A++VPADL VNALI W N + +K
Sbjct: 277 GWIDNLYGPTGVAAGAGTGLLRSIHCDGSVHANVVPADLTVNALIACAWDVANDQKTNNK 336
Query: 379 DPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQT------RTNLLQDGQGSVRSR 432
+ +PIYNYV S DNP+T+ E S K G++IPSS+ R N + R
Sbjct: 337 SRNDIPIYNYV-STDNPITYDELKEMSAKYGLEIPSSRAVWYYSFRNN---------KHR 386
Query: 433 TIQYPGVGVGQLQRAVHVDPSTRG---GPGSISVQYSGPR----LGRLSAREWEWDNSNV 485
+ V L A+ VD +T P + V R L + +EW++ N+ +
Sbjct: 387 IVHLFFVYFWHLFPALLVDTATVCIGRQPRLLKVYKKIHRFMDVLNYFATQEWKFTNNRL 446
Query: 486 QSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLDPVTRQKA-WKR 540
Q++ T + DR +F +IR++DW+ Y Y+RG V+ ++D LD + + + W+R
Sbjct: 447 QALITKLTFKDREQFYCDIRNVDWNTYFETYIRGIRVYLIKDPLDTLPQARVKWQR 502
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350420565|ref|XP_003492550.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 180/497 (36%), Positives = 278/497 (55%), Gaps = 40/497 (8%)
Query: 72 ELIRNRPNQTIMGTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131
L+++ I+ ++ + FY G I +TG TGF+GKLLIEKLLR P + IY++V
Sbjct: 29 HLVQSDRCDLILEQSNLSPIQQFYNGQSIFITGGTGFVGKLLIEKLLRECPGISFIYLLV 88
Query: 132 RAKKNQSPQQRIDKMLDTVAISL------KF---TCSTSKESAQAPDLGLSPDDKRLVTS 182
R KK + QRI+++ D KF + + + Q P LG+SP D++ +T
Sbjct: 89 RPKKGKDMHQRIEEIFDDPLFDKVKEKRPKFRHQIVAIAGDCGQ-PGLGISPADRQTITR 147
Query: 183 KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNI 242
+V++VFH AAT+RFDE++K A+ N+ + + ++DL ++ LK F +VSTA++N R +I
Sbjct: 148 EVSIVFHVAATVRFDEKMKLAVPINVRSPKDVMDLCREISYLKAFIHVSTAYANCTRTHI 207
Query: 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFF 302
EE +Y+A +L I + +D+ +E RL NTYT TKA AE ++ ++A
Sbjct: 208 EEKVYEAPIDGDKLATIVEY-MDEKLIEEITPRLLGAWPNTYTYTKAVAEGIIVKQAGDL 266
Query: 303 PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVV 362
PV IFRP IVIST++EP+ GWIDNLYGPTG+ GA GV+R+ D ++A++VP DL V
Sbjct: 267 PVGIFRPGIVISTYQEPVRGWIDNLYGPTGVAAGAGTGVLRSIHCDGSIEANVVPGDLTV 326
Query: 363 NALICAPWNGHER-----FHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQT 417
NALI W+ R + + +P+YNYV SKDNP+T+ + S K G++ P+S+
Sbjct: 327 NALIACAWDVANRRKSATTKERENDIPVYNYV-SKDNPITYDQLKLLSEKYGLEFPTSRA 385
Query: 418 ------RTNLLQDGQGSVRSRTIQYPGVGVGQLQRAVHVDPSTR---GGPGSISVQYSGP 468
R N + R I V + L A+ +D T P + +
Sbjct: 386 IWYYSFRNN---------KHRIIHLMYVYLLHLLPALLIDTVTLCLGKQPRMLKIYKKIH 436
Query: 469 R----LGRLSAREWEWDNSNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHH 524
+ L S EW++ N N++ + + DR F +I D+DWD Y R Y+RG ++
Sbjct: 437 KFMDVLNYFSIHEWKFSNDNIKELLNKMTEEDRENFACDITDIDWDQYFRTYIRGIRMYL 496
Query: 525 LQDKLDPVTRQK-AWKR 540
++D LD + + + W+R
Sbjct: 497 IKDPLDTLPKARIKWQR 513
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332030738|gb|EGI70414.1| Putative fatty acyl-CoA reductase [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 182/506 (35%), Positives = 274/506 (54%), Gaps = 36/506 (7%)
Query: 60 RIDKMLDTVAIIELIRNRPNQTIMGTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLR 119
RID T+ + I + P++ + +FY G I +TG TGF+GKLLIEKLLR
Sbjct: 8 RIDGQEVTIVESDCIPDSPSENSPVNEKLSPIQEFYNGQSIFITGGTGFMGKLLIEKLLR 67
Query: 120 SFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIS--------LKFTCSTSKESAQAPDLG 171
+ P V +IY++VR KK + QR + + D S + P+LG
Sbjct: 68 TCPGVTSIYLLVRPKKGKDVHQRTEDIFDDTVFSKLRDEQPKFRHQIVAIAGDCSQPNLG 127
Query: 172 LSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVS 231
+S D+ + +V++VFH AAT+RFDE+LK A+ N+ +T+ +++L K+ NLK F +VS
Sbjct: 128 ISAQDRATLIREVSIVFHVAATVRFDEKLKLAVPINVRSTRDVVNLCKEITNLKSFIHVS 187
Query: 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAA 291
TA++N + IEE Y +L+ + + ++D ++ +L + NTYT TKA A
Sbjct: 188 TAYANCPQSVIEEKFYDPPMDSDKLIALIEC-IEDKLAEDITPQLLGKWPNTYTFTKAVA 246
Query: 292 EQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDV 351
E ++ ++A PV IFRP+IVIST+ EP GWIDNLYGPTG+ GA G++R+ D V
Sbjct: 247 ENVIRKQAGDLPVGIFRPAIVISTYLEPARGWIDNLYGPTGVAAGAGTGLLRSIHCDGSV 306
Query: 352 KADIVPADLVVNALICAPW---NGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408
A++VPADL VNALI W N +K S PIYNYV S DNP+T+ S K
Sbjct: 307 HANVVPADLTVNALIACAWDVANDQRINNKSRSDAPIYNYV-STDNPITYDNLKDMSSKY 365
Query: 409 GVKIPSSQT------RTNLLQDGQGSVRSRTIQYPGVGVGQLQRAVHVDPSTRG---GPG 459
G++IPS++ R N + R I V L A+ VD +T P
Sbjct: 366 GLQIPSNRAVWYYSFRNN---------KHRIIHLFFVYFWHLLPALLVDTATVCIGRQPR 416
Query: 460 SISVQYSGPR----LGRLSAREWEWDNSNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRA 515
+ V + L S +EW++ N + ++ + DR +F +IRD+DW+ Y
Sbjct: 417 LLKVYKKIHKFMDVLNYFSTQEWKFTNDRLHALMGKLTFKDREKFYCDIRDVDWNFYFET 476
Query: 516 YVRGTLVHHLQDKLDPVTRQKA-WKR 540
Y+RG V+ ++D L+ + + + W+R
Sbjct: 477 YIRGIRVYLIKDPLETLPQARVKWQR 502
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270008642|gb|EFA05090.1| hypothetical protein TcasGA2_TC015188 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 261/479 (54%), Gaps = 48/479 (10%)
Query: 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKM---- 146
+ +FY+ +L+TGATGFLGKLL+EKLLR+ P + TIY++VR KK + R+DK+
Sbjct: 27 IAEFYKEKNVLVTGATGFLGKLLVEKLLRACPDLGTIYILVRPKKGEDEHSRVDKLYSDP 86
Query: 147 ----LDTVAISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKE 202
L + + S K PDLGLSP K L+ K+N++FH AAT+RFDE++
Sbjct: 87 IFGPLTKLFPKFQHKISIIKGDVSLPDLGLSPSSKSLIYEKINVIFHIAATVRFDEKITV 146
Query: 203 AIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKL 262
A N+ T+ +L++AK+C+NL+ F +VSTA++N + I+E+ YK +L+++ +
Sbjct: 147 ATAINVRGTRDLLNMAKKCQNLQSFVHVSTAYANCVQDEIDEVFYKMPISAHDLIELVET 206
Query: 263 DVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPG 322
+ ++T R+ NTYT TK AE + + PVC+ RP+IVI+T+KEP+
Sbjct: 207 KPEATLIEQT-SRIIQNWPNTYTFTKGVAEDAVKNFGKGLPVCVVRPAIVIATYKEPLRS 265
Query: 323 WIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSC 382
WIDNLYG TG+V GA G+++T D A++VP D V+N +I A + K
Sbjct: 266 WIDNLYGATGIVVGAGTGLLKTMHCDRSKTAELVPGDYVINNMIAASYK--TAVEKITDK 323
Query: 383 LPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQTRTNLLQDGQGSVRSRTIQYPGVGVG 442
+P+YNYV+S +N TW +F+ K G ++P+ R + Y + +
Sbjct: 324 IPVYNYVSSVENHHTWNDFMQKCQLWGEEVPT----------------IRCVWYYCLILN 367
Query: 443 QLQRA-------VHVDPS---------TRGGPGSISVQYSGPR----LGRLSAREWEWDN 482
+ A +H P+ +R P + + + + S EW++ N
Sbjct: 368 KFYWAHFLLSIFLHFLPALIMDLGMVLSRQRPIMVKIYKKITKFESVISHFSTNEWKFHN 427
Query: 483 SNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLDPVTRQK-AWKR 540
N Q++W + DR FPF++++LDWD+Y + + G + ++D + + + + W+R
Sbjct: 428 DNTQALWNSLGEDDRAMFPFSVKELDWDEYHKTHALGLRQYLVKDDISTLPQARIKWRR 486
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91084633|ref|XP_974667.1| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 261/479 (54%), Gaps = 48/479 (10%)
Query: 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKM---- 146
+ +FY+ +L+TGATGFLGKLL+EKLLR+ P + TIY++VR KK + R+DK+
Sbjct: 27 IAEFYKEKNVLVTGATGFLGKLLVEKLLRACPDLGTIYILVRPKKGEDEHSRVDKLYSDP 86
Query: 147 ----LDTVAISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKE 202
L + + S K PDLGLSP K L+ K+N++FH AAT+RFDE++
Sbjct: 87 IFGPLTKLFPKFQHKISIIKGDVSLPDLGLSPSSKSLIYEKINVIFHIAATVRFDEKITV 146
Query: 203 AIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKL 262
A N+ T+ +L++AK+C+NL+ F +VSTA++N + I+E+ YK +L+++ +
Sbjct: 147 ATAINVRGTRDLLNMAKKCQNLQSFVHVSTAYANCVQDEIDEVFYKMPISAHDLIELVET 206
Query: 263 DVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPG 322
+ ++T R+ NTYT TK AE + + PVC+ RP+IVI+T+KEP+
Sbjct: 207 KPEATLIEQT-SRIIQNWPNTYTFTKGVAEDAVKNFGKGLPVCVVRPAIVIATYKEPLRS 265
Query: 323 WIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSC 382
WIDNLYG TG+V GA G+++T D A++VP D V+N +I A + K
Sbjct: 266 WIDNLYGATGIVVGAGTGLLKTMHCDRSKTAELVPGDYVINNMIAASYK--TAVEKITDK 323
Query: 383 LPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQTRTNLLQDGQGSVRSRTIQYPGVGVG 442
+P+YNYV+S +N TW +F+ K G ++P+ R + Y + +
Sbjct: 324 IPVYNYVSSVENHHTWNDFMQKCQLWGEEVPT----------------IRCVWYYCLILN 367
Query: 443 QLQRA-------VHVDPS---------TRGGPGSISVQYSGPR----LGRLSAREWEWDN 482
+ A +H P+ +R P + + + + S EW++ N
Sbjct: 368 KFYWAHFLLSIFLHFLPALIMDLGMVLSRQRPIMVKIYKKITKFESVISHFSTNEWKFHN 427
Query: 483 SNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLDPVTRQK-AWKR 540
N Q++W + DR FPF++++LDWD+Y + + G + ++D + + + + W+R
Sbjct: 428 DNTQALWNSLGEDDRAMFPFSVKELDWDEYHKTHALGLRQYLVKDDISTLPQARIKWRR 486
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 545 | ||||||
| MGI|MGI:1914670 | 515 | Far1 "fatty acyl CoA reductase | 0.794 | 0.840 | 0.336 | 1.1e-64 | |
| UNIPROTKB|E2R4R9 | 514 | FAR1 "Uncharacterized protein" | 0.794 | 0.842 | 0.330 | 2.9e-64 | |
| UNIPROTKB|F1SGA0 | 515 | FAR2 "Uncharacterized protein" | 0.812 | 0.860 | 0.348 | 4.7e-64 | |
| UNIPROTKB|A5PJQ0 | 515 | FAR1 "Uncharacterized protein" | 0.801 | 0.848 | 0.331 | 6e-64 | |
| FB|FBgn0039620 | 517 | CG1443 [Drosophila melanogaste | 0.603 | 0.636 | 0.371 | 6.1e-64 | |
| RGD|1306647 | 515 | Far1 "fatty acyl CoA reductase | 0.788 | 0.834 | 0.338 | 9.7e-64 | |
| UNIPROTKB|Q66H50 | 515 | Far1 "Fatty acyl-CoA reductase | 0.788 | 0.834 | 0.338 | 9.7e-64 | |
| UNIPROTKB|Q8WVX9 | 515 | FAR1 "Fatty acyl-CoA reductase | 0.794 | 0.840 | 0.332 | 9.7e-64 | |
| ZFIN|ZDB-GENE-060503-367 | 515 | si:dkey-97m3.1 "si:dkey-97m3.1 | 0.8 | 0.846 | 0.345 | 1.6e-63 | |
| UNIPROTKB|G8ENM4 | 515 | FAR1 "Uncharacterized protein" | 0.792 | 0.838 | 0.331 | 2e-63 |
| MGI|MGI:1914670 Far1 "fatty acyl CoA reductase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 158/469 (33%), Positives = 251/469 (53%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT 149
S+ ++YEG IL+TGATGFLGK+L+EKLLRS PRV ++YV+VR K Q+PQ+R++++L +
Sbjct: 3 SIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPRVNSVYVLVRQKAGQTPQERVEEILSS 62
Query: 150 VAIS-LKFTCSTSKESAQA-------PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELK 201
L+ +E A P L LS +DK ++ N++FHCAAT+RF+E L+
Sbjct: 63 KLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLR 122
Query: 202 EAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISK 261
+A++ N+ AT+ ++ LA+Q KNL++F +VSTA++ RK+I+E++Y +L I
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKL--IDS 180
Query: 262 LD-VDDPKYQETRERLSHENMNTYTLTKXXXXXXXXXXXXFFPVCIFRPSIVISTWKEPI 320
L+ +DD + +L + NTY TK V I RPSIV ++WKEP
Sbjct: 181 LEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPF 240
Query: 321 PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHKD 379
PGWIDN GP+GL A G++RT + AD+VP D+VVN + A W +G R
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNR---- 296
Query: 380 PSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPS-SQTRTNLLQDGQGSVR 430
P + +YN NP WGE F L++ + P+ + T +LL +V
Sbjct: 297 PRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVS 356
Query: 431 SRTIQYP-GVGVGQLQRAVHVDPS-TRGGPGSISVQYSGPRLGRLSAREWEWDNSNVQSM 488
+ + + + R+ + + TR + ++Y ++ W W+ NV +
Sbjct: 357 HKAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEY-------FTSNSWVWNTDNVNML 409
Query: 489 WTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
+ D+ F ++R L W +Y+ Y GT + L +++ P R+
Sbjct: 410 MNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARK 458
|
|
| UNIPROTKB|E2R4R9 FAR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 155/469 (33%), Positives = 251/469 (53%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT 149
S+ ++YEG +L+TGATGFLGK+L+EKLLRS P+V ++YV+VR K Q+PQ+R+++++
Sbjct: 3 SIPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVISG 62
Query: 150 VAIS-LKFTCSTSKESAQA-------PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELK 201
L+ +E A P L LS +DK ++ +N++FHCAAT+RF+E L+
Sbjct: 63 KLFDRLRDENPDFREKVIAINSELTQPKLALSEEDKEIIIDSINIIFHCAATVRFNENLR 122
Query: 202 EAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISK 261
+A++ N+ AT+ ++ LA+Q KNL++F +VSTA++ RK+I+E++Y +L I
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKL--IDS 180
Query: 262 LD-VDDPKYQETRERLSHENMNTYTLTKXXXXXXXXXXXXFFPVCIFRPSIVISTWKEPI 320
L+ +DD + +L + NTY TK V I RPSIV ++WKEP
Sbjct: 181 LEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPF 240
Query: 321 PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHKD 379
PGWIDN GP+GL A G++RT + AD+VP D+VVN + A W +G R
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNR---- 296
Query: 380 PSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPS-SQTRTNLLQDGQGSVR 430
P + +YN NP WGE F L++ + P+ + T +LL +V
Sbjct: 297 PRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVS 356
Query: 431 SRTIQYP-GVGVGQLQRAVHVDPS-TRGGPGSISVQYSGPRLGRLSAREWEWDNSNVQSM 488
+ + + + R+ + + TR + ++Y ++ W W+ NV +
Sbjct: 357 HKAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEY-------FTSNSWVWNTDNVNML 409
Query: 489 WTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
+ D+ F ++R L W +Y+ Y GT + L +++ P R+
Sbjct: 410 MNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARK 458
|
|
| UNIPROTKB|F1SGA0 FAR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 163/468 (34%), Positives = 242/468 (51%)
Query: 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIS 153
FY G IL+TGATGFLGK+L+EKL R+ P +K IY++VR K Q+ QQR+ ++L++
Sbjct: 7 FYGGKSILITGATGFLGKVLMEKLFRTSPDLKVIYILVRPKAGQTLQQRVFQILNSKLFE 66
Query: 154 -LKFTCSTSKESAQA-------PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIR 205
+K C E +A D +S +D + + S N++FHCAAT+RFD+ L+ A++
Sbjct: 67 KVKEVCPNVHEKIRAISADLNQSDFAISKEDMQELLSYTNIIFHCAATVRFDDHLRHAVQ 126
Query: 206 TNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVD 265
N+ ATQ +L +A Q L+ F ++STAFSN K+I+E+IY +++ + +D
Sbjct: 127 LNVTATQQLLLMASQMPKLEAFIHISTAFSNCNLKHIDEVIYPCPVEPKKIIDSMEW-LD 185
Query: 266 DPKYQETRERLSHENMNTYTLTKXXXXXXXXXXXXFFPVCIFRPSIVISTWKEPIPGWID 325
D E +L + NTYT TK + I RPSIV +TW+EP PGW+D
Sbjct: 186 DAIIDEITPKLIGDRPNTYTYTKALGEMVVQQESGNINIAIIRPSIVGATWQEPFPGWVD 245
Query: 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385
NL GP+GL+ A G +R P AD++PAD VVN + W + H+ S L I
Sbjct: 246 NLNGPSGLIIAAGKGFLRCVRATPMAVADLIPADTVVNLTLAVGW--YTAVHRPKSVL-I 302
Query: 386 YNYVNSKDNPLTWGEFITKSLKEGVKIPSSQTRTNLLQDGQGSVRSRTIQYPGVGVGQLQ 445
Y+ + NP WG+ + L KIP R + + S TIQY V
Sbjct: 303 YHCTSGNFNPCNWGKMALQVLAAFEKIPFE--RAFRRPNADFTTNSITIQYWNA-VSHRA 359
Query: 446 RAVHVDPSTR-GGPGSISVQYSGPRLGRLSA------REWEWDNSNVQSMWT-LVPAGDR 497
A+ D R G + L +S R WEW N + + + L P R
Sbjct: 360 PAIIYDFYLRLTGRKPRMTKLMNRLLRTVSMLEYFINRSWEWSTDNTEMLMSELSPEDQR 419
Query: 498 VRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLDPVTRQKAW-KRHRSL 544
V F F++R L+W +Y+ YV G + L++ + + + K KR R++
Sbjct: 420 V-FNFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIPKAKQHLKRLRNI 466
|
|
| UNIPROTKB|A5PJQ0 FAR1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 154/465 (33%), Positives = 240/465 (51%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT 149
S+ ++YEG +L+TGATGFLGK+L+EKLLRS P+V ++YV+VR K Q+PQ+R+++++
Sbjct: 3 SIPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVISG 62
Query: 150 VAIS-LKFTCSTSKESAQA-------PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELK 201
L+ +E A P L LS +DK ++ N++FHCAAT+RF+E L+
Sbjct: 63 KLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEIIIDSTNIIFHCAATVRFNENLR 122
Query: 202 EAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISK 261
+A++ N+ AT+ ++ LA+Q KNL++F +VSTA++ RK+I+E++Y +L I
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKL--IDS 180
Query: 262 LD-VDDPKYQETRERLSHENMNTYTLTKXXXXXXXXXXXXFFPVCIFRPSIVISTWKEPI 320
L+ +DD + +L + NTY TK V I RPSIV ++WKEP
Sbjct: 181 LEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVVIVRPSIVGASWKEPF 240
Query: 321 PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHKD 379
PGWIDN GP+GL A G++RT + AD+VP D+VVN + A W +G R
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNMSLAAAWYSGVNR---- 296
Query: 380 PSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQTRTNLLQDGQGSVRSRTIQYPGV 439
P + +YN NP WGE + + P Q + + + Y +
Sbjct: 297 PRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQA---FRRPNVNLTSNHLLYYYWI 353
Query: 440 GVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGR-------LSAREWEWDNSNVQSMWTLV 492
V A D R S + + RL + ++ W W NV + +
Sbjct: 354 AVSHKAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWSTDNVNMLMNQL 413
Query: 493 PAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
D+ F ++R L W +Y+ Y GT + L +++ P R+
Sbjct: 414 NPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARK 458
|
|
| FB|FBgn0039620 CG1443 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
Identities = 127/342 (37%), Positives = 186/342 (54%)
Query: 80 QTIMGTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP 139
Q I + FY+ + +TG TGF GK++IEKLLR V IY+++R KK +
Sbjct: 21 QLISDVKDESPMQMFYKDKGVFLTGGTGFFGKIIIEKLLR-VTEVGQIYLLIRTKKGKDA 79
Query: 140 QQRIDKML-DTV-----AISLKFTCSTSKESAQA--PDLGLSPDDKRLVTSKVNLVFHCA 191
RI+ + D V ++ K+ C + S P LG+S D++ + VN+V H A
Sbjct: 80 FARIEDLFNDPVFAKMKQVNPKYRCQITIISGDCSLPGLGISADERETIMENVNIVLHSA 139
Query: 192 ATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHT 251
AT+RFDE+LK AI N+ T+ ++ LAK+ NLK +VSTAF++ ++I+E Y
Sbjct: 140 ATVRFDEKLKMAIAINVHGTKEIIKLAKEIVNLKALVHVSTAFAHCNMRHIQERFYSGTM 199
Query: 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKXXXXXXXXXXXXFFPVCIFRPSI 311
K+S+ +D+ + NTYT TK PV IFRP I
Sbjct: 200 SGENAFKLSEC-LDEHTLNTLTPTIIKGYPNTYTFTKVLAENVVQQSAQNLPVTIFRPGI 258
Query: 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371
VI+T++EP+ GWIDN+YGP G++ G +GV+R F D D KA IVP D+ VNAL+ + W+
Sbjct: 259 VITTYREPVTGWIDNMYGPCGVIVGIGSGVLRVFTGDMDNKAHIVPVDMCVNALLASAWD 318
Query: 372 GHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIP 413
++ P PIYNYV +N +TW ++ + G IP
Sbjct: 319 IARNKYETP---PIYNYVPDAENMVTWRRYMEDGFEYGCDIP 357
|
|
| RGD|1306647 Far1 "fatty acyl CoA reductase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 160/472 (33%), Positives = 247/472 (52%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT 149
S+ ++YEG IL+TGATGFLGK+L+EKLLRS P+V ++YV+VR K Q+PQ+R++++L
Sbjct: 3 SIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSG 62
Query: 150 VAIS-LK-----FT---CSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEEL 200
L+ F + + E Q P L LS +DK ++ N++FHCAAT+RF+E L
Sbjct: 63 KLFDRLRDENPDFRQKIIAINSELTQ-PKLALSEEDKEIIIDSTNVIFHCAATVRFNENL 121
Query: 201 KEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKIS 260
++A++ N+ AT+ ++ LA+Q KNL++F +VSTA++ RK+I+E++Y +L I
Sbjct: 122 RDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKL--ID 179
Query: 261 KLD-VDDPKYQETRERLSHENMNTYTLTKXXXXXXXXXXXXFFPVCIFRPSIVISTWKEP 319
L+ +DD + +L + NTY TK V I RPSIV ++WKEP
Sbjct: 180 SLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEP 239
Query: 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHK 378
PGWIDN GP+GL A G++RT + AD+VP D+VVN + A W +G R
Sbjct: 240 FPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNR--- 296
Query: 379 DPSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPSSQTRTNLLQDGQGSVR 430
P + +YN NP WGE F T L + + P + +N L
Sbjct: 297 -PRNIMVYNCTTGSTNPFHWGEVGDYLNHSFKTNPLNQVFRHPYVKFYSNNLMLHYWKGV 355
Query: 431 SRTIQYPGVGVGQLQRAVHVDP-----STRGGPGSISVQYSGPRLGRLSAREWEWDNSNV 485
T+ P + + R P TR + ++Y ++ W W+ NV
Sbjct: 356 KHTV--PALLLDLALRLTGQKPWMMKTITRLHKAMVFLEY-------FTSNSWVWNTDNV 406
Query: 486 QSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
+ + D+ F ++R L W +Y+ Y GT + L +++ P R+
Sbjct: 407 NMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARK 458
|
|
| UNIPROTKB|Q66H50 Far1 "Fatty acyl-CoA reductase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 160/472 (33%), Positives = 247/472 (52%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT 149
S+ ++YEG IL+TGATGFLGK+L+EKLLRS P+V ++YV+VR K Q+PQ+R++++L
Sbjct: 3 SIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSG 62
Query: 150 VAIS-LK-----FT---CSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEEL 200
L+ F + + E Q P L LS +DK ++ N++FHCAAT+RF+E L
Sbjct: 63 KLFDRLRDENPDFRQKIIAINSELTQ-PKLALSEEDKEIIIDSTNVIFHCAATVRFNENL 121
Query: 201 KEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKIS 260
++A++ N+ AT+ ++ LA+Q KNL++F +VSTA++ RK+I+E++Y +L I
Sbjct: 122 RDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKL--ID 179
Query: 261 KLD-VDDPKYQETRERLSHENMNTYTLTKXXXXXXXXXXXXFFPVCIFRPSIVISTWKEP 319
L+ +DD + +L + NTY TK V I RPSIV ++WKEP
Sbjct: 180 SLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEP 239
Query: 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHK 378
PGWIDN GP+GL A G++RT + AD+VP D+VVN + A W +G R
Sbjct: 240 FPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNR--- 296
Query: 379 DPSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPSSQTRTNLLQDGQGSVR 430
P + +YN NP WGE F T L + + P + +N L
Sbjct: 297 -PRNIMVYNCTTGSTNPFHWGEVGDYLNHSFKTNPLNQVFRHPYVKFYSNNLMLHYWKGV 355
Query: 431 SRTIQYPGVGVGQLQRAVHVDP-----STRGGPGSISVQYSGPRLGRLSAREWEWDNSNV 485
T+ P + + R P TR + ++Y ++ W W+ NV
Sbjct: 356 KHTV--PALLLDLALRLTGQKPWMMKTITRLHKAMVFLEY-------FTSNSWVWNTDNV 406
Query: 486 QSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
+ + D+ F ++R L W +Y+ Y GT + L +++ P R+
Sbjct: 407 NMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARK 458
|
|
| UNIPROTKB|Q8WVX9 FAR1 "Fatty acyl-CoA reductase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 156/469 (33%), Positives = 250/469 (53%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT 149
S+ ++YEG +L+TGATGFLGK+L+EKLLRS P+V ++YV+VR K Q+PQ+R++++L
Sbjct: 3 SIPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSG 62
Query: 150 VAIS-LKFTCSTSKESAQA-------PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELK 201
L+ +E A P L LS +DK ++ N++FHCAAT+RF+E L+
Sbjct: 63 KLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEVIIDSTNIIFHCAATVRFNENLR 122
Query: 202 EAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISK 261
+A++ N+ AT+ ++ LA+Q KNL++F +VSTA++ RK+I+E++Y +L I
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKL--IDS 180
Query: 262 LD-VDDPKYQETRERLSHENMNTYTLTKXXXXXXXXXXXXFFPVCIFRPSIVISTWKEPI 320
L+ +DD + +L + NTY TK V I RPSIV ++WKEP
Sbjct: 181 LEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPF 240
Query: 321 PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHKD 379
PGWIDN GP+GL A G++RT + AD+VP D+VVN + A W +G R
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNR---- 296
Query: 380 PSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPS-SQTRTNLLQDGQGSVR 430
P + +YN NP WGE F L++ + P+ + T +LL +V
Sbjct: 297 PRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVS 356
Query: 431 SRTIQYP-GVGVGQLQRAVHVDPS-TRGGPGSISVQYSGPRLGRLSAREWEWDNSNVQSM 488
+ + + + R+ + + TR + ++Y ++ W W+ NV +
Sbjct: 357 HKAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEY-------FTSNSWVWNTENVNML 409
Query: 489 WTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
+ D+ F ++R L W +Y+ Y GT + L +++ P R+
Sbjct: 410 MNQLNPEDKKTFNIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARK 458
|
|
| ZFIN|ZDB-GENE-060503-367 si:dkey-97m3.1 "si:dkey-97m3.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 161/466 (34%), Positives = 247/466 (53%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID----- 144
S+ ++Y G +L+TGATGF+GK+L+EKLLRS P V +Y++VR K QS +R+
Sbjct: 3 SISEWYAGKNVLITGATGFMGKVLVEKLLRSCPDVNALYILVRPKAGQSMSERVQDMMKC 62
Query: 145 KMLDTVAI-SLKF---TCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEEL 200
K+ D V + +F + S E Q P L +S D +TS+V++VFHCAAT+RFDE L
Sbjct: 63 KLFDRVREDNPEFHQKIIAISSELMQ-PGLAISAQDVETLTSRVHIVFHCAATIRFDEPL 121
Query: 201 KEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKIS 260
K A++ N+ ATQ +L LA+Q + L+ F ++STA++N R++I+E+IY +L I
Sbjct: 122 KHALQLNVMATQQLLSLAQQMQQLQAFIHISTAYANCNRRHIDELIYPPPVEPRKL--ID 179
Query: 261 KLD-VDDPKYQETRERLSHENMNTYTLTKXXXXXXXXXXXXFFPVCIFRPSIVISTWKEP 319
L+ +D+ ++ RL + NTYT TK V I RPSIV ++W+EP
Sbjct: 180 SLEWMDESIIRDITPRLIGDWPNTYTYTKALAECVVQQESAKLNVGIVRPSIVGASWQEP 239
Query: 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKD 379
PGWIDN GP+G+ A G++RT D AD++P D+V+N + A W + +K
Sbjct: 240 FPGWIDNFNGPSGVFIAAGKGILRTMRASNDAVADLIPVDVVINLTLAAGW--YTAVNKP 297
Query: 380 PSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPSSQTRTNLLQDGQGSVRS 431
+ L +YN NP WGE F L++ + P++ +N L + S
Sbjct: 298 KTAL-VYNCTTGGINPFHWGEIEHHVMSTFKRNPLEQAFRRPNANITSNYLIYQYWILVS 356
Query: 432 RTIQYPGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGRLSAREWEWDNSNVQSMWTL 491
+ P + L R P + L S+++WEW++ N+ +
Sbjct: 357 HKV--PALLYDLLLRLSGHKPQMMRIFNRLHKAIG--LLEYFSSQDWEWNSDNMNMLMAQ 412
Query: 492 VPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHL-QDKLD-PVTRQ 535
+ DR F F++R L+W +Y+ Y GT + L +D D P RQ
Sbjct: 413 LSTDDRKIFNFDVRQLNWPEYIENYCIGTKKYVLNEDMSDIPAARQ 458
|
|
| UNIPROTKB|G8ENM4 FAR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 156/470 (33%), Positives = 251/470 (53%)
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID----- 144
S+ ++YEG IL+TGATGFLGK+L+EKLLRS P+V ++YV+VR K Q+P++R++
Sbjct: 3 SIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPKERVEEAISG 62
Query: 145 KMLDTVAIS----LKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEEL 200
K+ D + + + + E Q P L LS +DK+ + N++FHCAAT+RF+E L
Sbjct: 63 KLFDRLRDENPDFREKIIAINSELTQ-PKLALSEEDKKTIIDSTNIIFHCAATVRFNENL 121
Query: 201 KEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKIS 260
++A++ N+ AT+ ++ LA+Q KNL++F +VSTA++ RK+I+E++Y +L I+
Sbjct: 122 RDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPQKL--IN 179
Query: 261 KLD-VDDPKYQETRERLSHENMNTYTLTKXXXXXXXXXXXXFFPVCIFRPSIVISTWKEP 319
L+ +DD + +L + NTY TK V I RPSIV ++WKEP
Sbjct: 180 SLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEP 239
Query: 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPW-NGHERFHK 378
PGWIDN GP+GL A G++RT + AD+VP D+VVN + A W +G R
Sbjct: 240 FPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNR--- 296
Query: 379 DPSCLPIYNYVNSKDNPLTWGE--------FITKSLKEGVKIPS-SQTRTNLLQDGQGSV 429
P + +YN NP WGE F L++ + P+ + T +LL +V
Sbjct: 297 -PRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAV 355
Query: 430 RSRTIQYP-GVGVGQLQRAVHVDPS-TRGGPGSISVQYSGPRLGRLSAREWEWDNSNVQS 487
+ + + + R+ + + TR + ++Y ++ W W NV
Sbjct: 356 SHKAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVLLEY-------FTSNSWVWSTDNVNM 408
Query: 488 MWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLD--PVTRQ 535
+ + D+ F ++R L W +Y+ Y GT + L +++ P R+
Sbjct: 409 LMNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARK 458
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q922J9 | FACR1_MOUSE | 1, ., 2, ., 1, ., n, 2 | 0.3446 | 0.7871 | 0.8330 | yes | N/A |
| Q66H50 | FACR1_RAT | 1, ., 2, ., 1, ., n, 2 | 0.3453 | 0.7889 | 0.8349 | yes | N/A |
| Q8WVX9 | FACR1_HUMAN | 1, ., 2, ., 1, ., n, 2 | 0.3396 | 0.7853 | 0.8310 | yes | N/A |
| Q5R834 | FACR1_PONAB | 1, ., 2, ., 1, ., n, 2 | 0.3396 | 0.7853 | 0.8310 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 545 | |||
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 1e-104 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 5e-76 | |
| PLN02503 | 605 | PLN02503, PLN02503, fatty acyl-CoA reductase 2 | 1e-43 | |
| PLN02996 | 491 | PLN02996, PLN02996, fatty acyl-CoA reductase | 6e-40 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 5e-35 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 3e-25 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 8e-18 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 1e-16 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 7e-16 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 1e-13 | |
| cd09071 | 92 | cd09071, FAR_C, C-terminal domain of fatty acyl Co | 4e-13 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 2e-11 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 2e-10 | |
| PLN02996 | 491 | PLN02996, PLN02996, fatty acyl-CoA reductase | 7e-10 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 2e-09 | |
| PLN02503 | 605 | PLN02503, PLN02503, fatty acyl-CoA reductase 2 | 3e-09 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 5e-09 | |
| pfam03015 | 94 | pfam03015, Sterile, Male sterility protein | 2e-08 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 4e-08 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 8e-07 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 1e-06 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 2e-06 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 3e-06 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 5e-06 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 6e-06 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 1e-05 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 2e-05 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 2e-05 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 3e-05 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 3e-05 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 6e-05 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 1e-04 | |
| cd08948 | 308 | cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta | 1e-04 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 5e-04 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 7e-04 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 8e-04 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 0.001 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 315 bits (809), Expect = e-104
Identities = 131/315 (41%), Positives = 184/315 (58%), Gaps = 20/315 (6%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TGATGFLGK+L+EKLLRS P + IY+++R K QS ++R+ ++L F
Sbjct: 3 VLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELL----KDKLFDRG 58
Query: 160 TSKES------------AQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTN 207
+ P+LGLS +D + + +VN++ HCAAT+ FDE L EA+ N
Sbjct: 59 RNLNPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCAATVTFDERLDEALSIN 118
Query: 208 MCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDP 267
+ T +L+LAK+CK LK F +VSTA+ N R+ IEE +Y +L+ I +L +DD
Sbjct: 119 VLGTLRLLELAKRCKKLKAFVHVSTAYVNGDRQLIEEKVYPPPADPEKLIDILEL-MDDL 177
Query: 268 KYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNL 327
+ + +L + NTYT TKA AE+L+ +E P+ I RPSIV +T KEP PGWIDN
Sbjct: 178 ELERATPKLLGGHPNTYTFTKALAERLVLKERGNLPLVIVRPSIVGATLKEPFPGWIDNF 237
Query: 328 YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387
GP GL G++RT DP+ ADI+P D+V NAL+ A R P L +Y+
Sbjct: 238 NGPDGLFLAYGKGILRTMNADPNAVADIIPVDVVANALLAAAAYSGVR---KPRELEVYH 294
Query: 388 YVNSKDNPLTWGEFI 402
+S NP TWGE
Sbjct: 295 CGSSDVNPFTWGEAE 309
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 5e-76
Identities = 104/269 (38%), Positives = 140/269 (52%), Gaps = 31/269 (11%)
Query: 103 TGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSK 162
TGATGFLGK+L+EKLLRS P VK IY +VRAK +S +R+ + L + + +
Sbjct: 2 TGATGFLGKVLLEKLLRSTPEVK-IYCLVRAKDGESALERLRQELLKYGLFDRLKAL-ER 59
Query: 163 ESA-----QAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDL 217
P+LGLS +D + + +V+++ H AAT+ F E + TN+ T+ +L L
Sbjct: 60 IIPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPYSDLRATNVLGTREVLRL 119
Query: 218 AKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLS 277
AKQ K F +VSTA+ N R E K KLD D+P
Sbjct: 120 AKQMKK-LPFHHVSTAYVNGERGG----------LLEE--KPYKLDEDEPALLGGLP--- 163
Query: 278 HENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLY-GPTGLVTG 336
N YT +K AEQL+ E A PV I+RPSI+ E GWI+ GP GL+ G
Sbjct: 164 ----NGYTQSKWLAEQLVREAAGGLPVVIYRPSIITG---ESRTGWINGDDFGPRGLLGG 216
Query: 337 AQAGVVRTFLVDPDVKADIVPADLVVNAL 365
A GV+ L DPD + D+VP D V NA+
Sbjct: 217 AGLGVLPDILGDPDARLDLVPVDYVANAI 245
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 1e-43
Identities = 134/506 (26%), Positives = 211/506 (41%), Gaps = 113/506 (22%)
Query: 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRI-DKMLDT 149
+ +F G L+TGATGFL K+LIEK+LR+ P V IY++++AK ++ +R+ ++++D
Sbjct: 113 IAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDA 172
Query: 150 VAIS-LKFTCSTSKESAQA------------PDLGLSPDDKRLVTSKVNLVFHCAATLRF 196
L+ T S +S +LGL PD + +V+++ + AA F
Sbjct: 173 ELFKCLQETHGKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTF 232
Query: 197 DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNI-------------- 242
DE AI N ++ AK+CK LK+F VSTA+ N R+
Sbjct: 233 DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFRMGDCIAR 292
Query: 243 EEIIYKAHTHYSELLKIS---KL-------DVDDPKYQETRERL------SHENMNTYTL 286
E I + H L I KL + + + L + +TY
Sbjct: 293 ELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVF 352
Query: 287 TKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDN--------LYGPTGLVTGAQ 338
TKA E ++ PV I RPS++ STWK+P PGW++ LY G +TG
Sbjct: 353 TKAMGEMVINSMRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTG-- 410
Query: 339 AGVVRTFLVDPDVKADIVPADLVVNALICA-PWNGHERFHKDPSCLPIYNYVNSKDNPLT 397
FL DP+ D+VPAD+VVNA + A +G + +Y +S NPL
Sbjct: 411 ------FLADPNGVLDVVPADMVVNATLAAMAKHGGAA----KPEINVYQIASSVVNPLV 460
Query: 398 WGEFIT------------KSLKEGVKIP-----------SSQTRTNLLQ----DGQGSVR 430
+ + S + +P SS + L G S
Sbjct: 461 FQDLARLLYEHYKSSPYMDSKGRPIHVPPMKLFSSMEDFSSHLWRDALLRSGLAGMSSSD 520
Query: 431 SRTIQ-YPGVGVGQLQRAVHVDPSTRGGPGSISVQYS--GPRLGRLSAREWEWDNSNVQS 487
+ Q + +++A ++ SI Y+ G R +DNSN Q
Sbjct: 521 RKLSQKLENICAKSVEQAKYL--------ASIYEPYTFYGGR----------FDNSNTQR 562
Query: 488 MWTLVPAGDRVRFPFNIRDLDWDDYL 513
+ + ++ F F++ +DW DY+
Sbjct: 563 LMERMSEEEKAEFGFDVGSIDWRDYI 588
|
Length = 605 |
| >gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 6e-40
Identities = 109/349 (31%), Positives = 167/349 (47%), Gaps = 48/349 (13%)
Query: 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQR-----IDKMLD 148
F E IL+TGATGFL K+ +EK+LR P VK +Y+++RA +S QR I K L
Sbjct: 8 FLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLF 67
Query: 149 TV---AISLKFTCSTSKESAQAP------DLGLSPDDKR-LVTSKVNLVFHCAATLRFDE 198
V + S++ P DLG+ + R + ++++V + AAT FDE
Sbjct: 68 KVLREKLGENLNSLISEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDE 127
Query: 199 ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLK 258
A+ N +L+ AK+C +KM +VSTA+ + +I + H E L
Sbjct: 128 RYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGEK---SGLILEKPFHMGETLN 184
Query: 259 -ISKLDVDDPK--YQETRERLSHENM-----------------------NTYTLTKAAAE 292
KLD+++ K +E + L+ ++ NTY TKA E
Sbjct: 185 GNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGE 244
Query: 293 QLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVK 352
LL + P+ I RP+++ ST+KEP PGWI+ L ++ G G + FL DP+
Sbjct: 245 MLLGNFKENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSV 304
Query: 353 ADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEF 401
D++PAD+VVNA+I A S + IY+ +S NP+ +
Sbjct: 305 LDVIPADMVVNAMIVA---MAAHAGGQGSEI-IYHVGSSLKNPVKFSNL 349
|
Length = 491 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 5e-35
Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 45/272 (16%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+ +TG TGFLG+ L+++LL + V+VR++ +RI+ + + +
Sbjct: 1 VFVTGGTGFLGRHLVKRLL---ENGFKVLVLVRSESLGEAHERIE---EAGLEADRVRVL 54
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
+ P+LGLS R + KV+ V HCAA+ F ++A RTN+ T+ +L+LA
Sbjct: 55 EGDLTQ--PNLGLSAAASRELAGKVDHVIHCAASYDFQAPNEDAWRTNIDGTEHVLELAA 112
Query: 220 QCKNLKMFTYVSTAF-SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSH 278
+ +++ F YVSTA+ + + NI E +++ + +
Sbjct: 113 RL-DIQRFHYVSTAYVAGNREGNIRE-----------------TELNPGQNFK------- 147
Query: 279 ENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQ 338
N Y +KA AEQL+ A P+ ++RPSIV+ K G I+ + G L+
Sbjct: 148 ---NPYEQSKAEAEQLVRAAATQIPLTVYRPSIVVGDSKT---GRIEKIDGLYELLNLLA 201
Query: 339 AGVVRTFLVDPDVKA---DIVPADLVVNALIC 367
+ +L P K ++VP D V +A++
Sbjct: 202 K--LGRWLPMPGNKGARLNLVPVDYVADAIVY 231
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-25
Identities = 82/320 (25%), Positives = 128/320 (40%), Gaps = 66/320 (20%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TGATGFLG L+ +LL+ V IY +VRAK ++ +R+ L ++L
Sbjct: 2 VLLTGATGFLGAYLLRELLKR-KNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 160 TSKESAQA-----PDLGLSPDDKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCAT 211
S+ P+LGLS DD + + +V+++ H A + + EELK N+ T
Sbjct: 61 LSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVYPYEELK---PANVLGT 117
Query: 212 QTMLDLAKQCKNLKMFTYVST--AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKY 269
+ +L LA LK +VST FS ++ D +
Sbjct: 118 KELLKLAAT-GKLKPLHFVSTLSVFSAEEYNALD-------------------DEESDDM 157
Query: 270 QETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNL 327
E++ L N Y +K AE+LL EA + PV I RP + + I D
Sbjct: 158 LESQNGLP----NGYIQSKWVAEKLL-REAANRGLPVAIIRPGNIFGDSETGIGNTDDFF 212
Query: 328 YGPTGLVTGAQAGVVRTFLVDPDVKA--DIVPADLV---VNALICAPWNGHERFHKDPSC 382
+ L Q G+ P A D+ P D V + L N
Sbjct: 213 W--RLLKGCLQLGIY------PISGAPLDLSPVDWVARAIVKLALNESNEFS-------- 256
Query: 383 LPIYNYVNSKDNPLTWGEFI 402
IY+ +N ++ + +
Sbjct: 257 --IYHLLNP--PLISLNDLL 272
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 8e-18
Identities = 61/233 (26%), Positives = 89/233 (38%), Gaps = 54/233 (23%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TGATGFLG L+ +LL + +VRA+ +++ R++K D + S
Sbjct: 3 VLLTGATGFLGAYLLLELLDRSDA--KVICLVRAQSDEAALARLEKTFDLYRHWDEL--S 58
Query: 160 TSKESAQA-----PDLGLS-PDDKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCA 210
+ A PDLGLS + L + V+L+ H AA + EL+ A N+
Sbjct: 59 ADRVEVVAGDLAEPDLGLSERTWQELAEN-VDLIIHNAALVNHVFPYSELRGA---NVLG 114
Query: 211 TQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQ 270
T +L LA K K YVS+ IS + +
Sbjct: 115 TAEVLRLAATGK-PKPLHYVSS--------------------------ISVGETEYYSNF 147
Query: 271 ETRERLSHENMNT-------YTLTKAAAEQLLCEEA--QFFPVCIFRPSIVIS 314
N Y +K AE L EA + PV IFRP +
Sbjct: 148 TVDFDEISPTRNVGQGLAGGYGRSKWVAE-KLVREAGDRGLPVTIFRPGYITG 199
|
Length = 382 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 1e-16
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 42/226 (18%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TGATGFLG L+E+LLR + K + +VRA + +R+ + L + + +
Sbjct: 2 VLLTGATGFLGAYLLEELLRRSTQAK-VICLVRAASEEHAMERLREALRSYRLWH-EDLA 59
Query: 160 TSKESAQA-----PDLGLS-PDDKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCA 210
+ A P LGLS + +RL + V+ + H A + + EL+ N+
Sbjct: 60 RERIEVVAGDLSEPRLGLSDAEWERLAEN-VDTIVHNGALVNWVYPYSELR---GANVLG 115
Query: 211 TQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQ 270
T+ +L LA + K YVST + D+
Sbjct: 116 TREVLRLAASGR-AKPLHYVSTISVGAAI-----------------------DLSTVTED 151
Query: 271 ETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVIS 314
+ Y +K AE LL EA + PV I RP ++
Sbjct: 152 DATVTPPPGLAGGYAQSKWVAE-LLVREASDRGLPVTIVRPGRILG 196
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 7e-16
Identities = 26/48 (54%), Positives = 39/48 (81%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKML 65
+L+TGATGFLGK+L+EKLLRS P + IY+++R K QS ++R+ ++L
Sbjct: 3 VLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELL 50
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 21 TGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIRNRPN 79
TGATGFLGK+L+EKLLRS P VK IY +VRAK +S +R+ + L + + ++
Sbjct: 2 TGATGFLGKVLLEKLLRSTPEVK-IYCLVRAKDGESALERLRQELLKYGLFDRLKALER 59
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|176924 cd09071, FAR_C, C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-13
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 476 REWEWDNSNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVH 523
EW +DN N +++W + DR F F+IR +DWDDY Y+ G +
Sbjct: 43 NEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFENYIPGLRKY 90
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. Length = 92 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-11
Identities = 57/288 (19%), Positives = 85/288 (29%), Gaps = 100/288 (34%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
IL+TG GF+G L+ +LL V VI R LD V
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEV---VVIDR--------------LDVV--------- 34
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEEL---KEAIRTNMCATQTMLD 216
H AA + E TN+ T +L+
Sbjct: 35 ----------------------------VHLAALVGVPASWDNPDEDFETNVVGTLNLLE 66
Query: 217 LAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERL 276
A++ +K F Y S+A + Y P+ E
Sbjct: 67 AARKA-GVKRFVYASSA--SVY--------------------------GSPEGLPEEEET 97
Query: 277 SHENMNTYTLTKAAAEQLLCE--EAQFFPVCIFRPSIVIST-----WKEPIPGWIDNLYG 329
++ Y ++K AAE LL E+ PV I R + V + +I
Sbjct: 98 PPRPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANVYGPGQRPRLDGVVNDFIRRALE 157
Query: 330 PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFH 377
L R F+ V D+V A + + P G ++
Sbjct: 158 GKPLTVFGGGNQTRDFI---HVD-DVVRA---ILHALENPLEGGGVYN 198
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 75/279 (26%), Positives = 120/279 (43%), Gaps = 64/279 (22%)
Query: 101 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLD------TVAISL 154
+TG TGF+G+ L+ +LL R T++V+VR QS R++ + V +
Sbjct: 4 FVTGGTGFIGRRLVSRLL-DRRREATVHVLVRR---QS-LSRLEALAAYWGADRVVPLVG 58
Query: 155 KFTCSTSKESAQAPDLGLSPDD-KRLVTSKVNLVFHCAAT--LRFDEELKEAIRTNMCAT 211
T P LGLS D L ++ V H AA L DEE + A N+ T
Sbjct: 59 DLT---------EPGLGLSEADIAELG--DIDHVVHLAAIYDLTADEEAQRA--ANVDGT 105
Query: 212 QTMLDLAKQCKNLKMFTYVST-AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQ 270
+ +++LA++ + F +VS+ A + Y + E DD
Sbjct: 106 RNVVELAERLQA-ATFHHVSSIAVAGDYEG-----------VFRE---------DD---F 141
Query: 271 ETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330
+ + L Y TK AE+L+ EE P ++RP++V+ + G +D + GP
Sbjct: 142 DEGQGLPT----PYHRTKFEAEKLVREECG-LPWRVYRPAVVVGDSRT---GEMDKIDGP 193
Query: 331 TGLVTGAQA-GVVRTFL--VDPDV-KADIVPADLVVNAL 365
+ ++L V PD + +IVP D V +AL
Sbjct: 194 YYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADAL 232
|
Length = 657 |
| >gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 7e-10
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 12 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRI 61
F E IL+TGATGFL K+ +EK+LR P VK +Y+++RA +S QR+
Sbjct: 8 FLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRL 57
|
Length = 491 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT 67
+L+TGATGFLG L+ +LL+ V IY +VRAK ++ +R+ L
Sbjct: 2 VLLTGATGFLGAYLLRELLKR-KNVSKIYCLVRAKDEEAALERLIDNLKE 50
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 25/60 (41%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 9 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRI-DKMLDT 67
+ +F G L+TGATGFL K+LIEK+LR+ P V IY++++AK ++ +R+ ++++D
Sbjct: 113 IAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDA 172
|
Length = 605 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 5e-09
Identities = 49/226 (21%), Positives = 76/226 (33%), Gaps = 55/226 (24%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
IL+TG GF+G L+E+LL + V + R + + ++ V + L
Sbjct: 3 ILVTGGAGFIGSHLVERLLAAGHDV---RGLDR---LRDGLDPLLSGVEFVVLDL----- 51
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAA----TLRFDEELKEAIRTNMCATQTML 215
DL L + V H AA + E + N+ T +L
Sbjct: 52 ------TDRDL-----VDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLL 100
Query: 216 DLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRER 275
+ A+ +K F + S+ S + D P +
Sbjct: 101 EAARAA-GVKRFVFASSV--------------------------SVVYGDPPPLPIDEDL 133
Query: 276 LSHENMNTYTLTKAAAEQLL--CEEAQFFPVCIFRPSIVISTWKEP 319
+N Y ++K AAEQLL PV I RP V +P
Sbjct: 134 GPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKP 179
|
Length = 314 |
| >gnl|CDD|111859 pfam03015, Sterile, Male sterility protein | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-08
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 470 LGRLSAREWEWDNSNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRG 519
L S EW +DN N + + + D+ F F++ LDWD+Y R +RG
Sbjct: 37 LQPFSLNEWIFDNKNTRELREKMSEEDKKLFNFDMESLDWDEYFRNAIRG 86
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 94 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 55/219 (25%), Positives = 78/219 (35%), Gaps = 56/219 (25%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
IL+TGATGFLG L+ LL RV+ +VR+ + +LD + +
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVR---ALVRSGSDAV-------LLDGLPV------- 43
Query: 160 TSKESAQAPDLGLSPDDKRLVT---SKVNLVFHCAATLRF-DEELKEAIRTNMCATQTML 215
E + DL D + + VFH AA ++ KE RTN+ T+ +L
Sbjct: 44 ---EVVEG-DL----TDAASLAAAMKGCDRVFHLAAFTSLWAKDRKELYRTNVEGTRNVL 95
Query: 216 DLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRER 275
D A + ++ HT L D ET
Sbjct: 96 DAA-------------------LEAGVRRVV---HTSSIAALGGPPDGRID----ETTPW 129
Query: 276 LSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVI 313
N Y +K AE + E A + V I PS V
Sbjct: 130 NERPFPNDYYRSKLLAELEVLEAAAEGLDVVIVNPSAVF 168
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 56/197 (28%)
Query: 60 RIDKMLDTVAI-----IELIRNRPNQTIMGTASPPSLDD-----FYEGAEILMTGATGFL 109
++ + D IE + RP P +LD G +L+TG G +
Sbjct: 212 QLTDLKDLNGQLREIEIEDLLGRP---------PVALDTELIGAMLTGKTVLVTGGGGSI 262
Query: 110 GKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPD 169
G L ++L+ P K I + R + ID L LK
Sbjct: 263 GSELCRQILKFNP--KEIILFSRDEYK---LYLIDMELREKFPELKL----------RFY 307
Query: 170 LGLSPDDKRLV----TSKVNLVFHCAATLRFDEELK----------EAIRTNMCATQTML 215
+G D R+ KV++VFH AA LK EAI+TN+ T+ +
Sbjct: 308 IGDVRDRDRVERAMEGHKVDIVFHAAA-------LKHVPLVEYNPEEAIKTNVLGTENVA 360
Query: 216 DLAKQCKNLKMFTYVST 232
+ A + +K F +ST
Sbjct: 361 EAAIKNG-VKKFVLIST 376
|
Length = 588 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 56/274 (20%), Positives = 95/274 (34%), Gaps = 62/274 (22%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TG +GF G+ L+++LL R T YV P + + ++F
Sbjct: 2 VLVTGGSGFFGERLVKQLLE---RGGT-YVRSFDIA--PPGEALSAWQHPN---IEFLKG 52
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAA---TLRFDEELKEAIRTNMCATQTMLD 216
+D S + VFH AA + E N+ TQ +LD
Sbjct: 53 DI----------TDRNDVEQALSGADCVFHTAAIVPLAGPRDLYWE---VNVGGTQNVLD 99
Query: 217 LAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERL 276
++C ++ F Y S++ +I+ ++ + +D
Sbjct: 100 ACQRC-GVQKFVYTSSS----------SVIFGGQNIHNGDETLPYPPLD----------- 137
Query: 277 SHENMNTYTLTKAAAEQLLCEEAQF--FPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLV 334
+ Y TKA AE ++ E C RP+ + PG D P L
Sbjct: 138 ----SDMYAETKAIAEIIVLEANGRDDLLTCALRPAGIFG------PG--DQGLVP-ILF 184
Query: 335 TGAQAGVVRTFLVDPDVKADIVPADLVVNALICA 368
A+ G+V+ + D + +A I A
Sbjct: 185 EWAEKGLVKFVFGRGNNLVDFTYVHNLAHAHILA 218
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 37/147 (25%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TG G +G L ++L+ P K I + R + + R + + L+F
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNP--KKIILFSRDEFKLY-EIRQELRQEYNDPKLRF--- 54
Query: 160 TSKESAQAPDLGLSPDDKRLV----TSKVNLVFHCAATLRFDEELK----------EAIR 205
+G D +RL V+ VFH AA LK EAI+
Sbjct: 55 ---------FIGDVRDRERLERAMEQHGVDTVFHAAA-------LKHVPLVEYNPMEAIK 98
Query: 206 TNMCATQTMLDLAKQCKNLKMFTYVST 232
TN+ T+ + + A + ++ F +ST
Sbjct: 99 TNVLGTENVAEAAIEN-GVEKFVLIST 124
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 25/157 (15%)
Query: 101 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS- 159
L+TG GFLG+ +I LL +K I V +DK I
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRV-------------LDKAFGPELIEHFEKSQG 49
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFD--EELKEAIRTNMCATQTMLDL 217
+ + D+ R V++V H AA + +E N+ TQ +L+
Sbjct: 50 KTYVTDIEGDIKDLSFLFRACQG-VSVVIHTAAIVDVFGPPNYEELEEVNVNGTQAVLEA 108
Query: 218 AKQCKNLKMFTYVST---AFSNSYRKNIEEIIYKAHT 251
Q N+K Y S+ A N I+
Sbjct: 109 CVQN-NVKRLVYTSSIEVAGPNFKG----RPIFNGVE 140
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAI 70
+L+TGATGFLG L+ +LL + +VRA+ +++ R++K D
Sbjct: 3 VLLTGATGFLGAYLLLELLDRSDA--KVICLVRAQSDEAALARLEKTFDLYRH 53
|
Length = 382 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 54/237 (22%), Positives = 82/237 (34%), Gaps = 72/237 (30%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
IL+TG TGF+G L+ +LL+ V I + R + RI
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEV--IVLGRRRRSESLNTGRIRFHEG----------- 47
Query: 160 TSKESAQAPDLGLSPDDKRLVT-SKVNLVFHCAA---TLRFDEELKEAIRTNMCATQTML 215
DL +RL+ + + V H AA E+ + IR N+ T +L
Sbjct: 48 ---------DLTDPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLL 98
Query: 216 DLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRER 275
+ A++ +K F + S++ E+ Y DV DP E
Sbjct: 99 EAARRA-GVKRFVFASSS----------EV-------YG--------DVADPPITEDT-- 130
Query: 276 LSHENMNTYTLTKAAAEQLLCE--EAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330
++ Y K AAE+L+ A I R N+YGP
Sbjct: 131 -PLGPLSPYAAAKLAAERLVEAYARAYGLRAVILRLF---------------NVYGP 171
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLD 66
+L+TGATGFLG L+E+LLR + K + +VRA + +R+ + L
Sbjct: 2 VLLTGATGFLGAYLLEELLRRSTQAK-VICLVRAASEEHAMERLREALR 49
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 69/223 (30%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVI--VRAKKNQSPQQRIDKMLDTVAISLKFT 157
+L+TGA GF+G+ L++KLL + V VR +N P + ++ D
Sbjct: 2 VLVTGANGFIGRALVDKLLS-----RGEEVRIAVRNAENAEPSVVLAELPD--------- 47
Query: 158 CSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAA-----TLRFDEELKEAIRTNMCATQ 212
D + V+ V H AA + + L + + N T+
Sbjct: 48 ----------------IDSFTDLFLGVDAVVHLAARVHVMNDQGADPLSDYRKVNTELTR 91
Query: 213 TMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQET 272
+ A + + +K F ++S S + N E + + E D P+
Sbjct: 92 RLARAAAR-QGVKRFVFLS-----SVKVNGEGTV---GAPFDE------TDPPAPQ---- 132
Query: 273 RERLSHENMNTYTLTKAAAEQLLCEEAQF---FPVCIFRPSIV 312
+ Y +K AE+ L E V I RP +V
Sbjct: 133 ---------DAYGRSKLEAERAL-LELGASDGMEVVILRPPMV 165
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 54/290 (18%), Positives = 92/290 (31%), Gaps = 84/290 (28%)
Query: 101 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST 160
L+TG GFLG+ ++ LLR ++ + V D +
Sbjct: 1 LVTGGGGFLGRHIVRLLLR-EGELQEVRVF-------------DLRFSPELLEDFSKLQV 46
Query: 161 SKESAQAPDLGLSPDDKRLVTSKVNLVFHCAA------TLRFDEELKEAIRTNMCATQTM 214
+ D+ D R ++V H AA D ++ N+ TQ +
Sbjct: 47 --ITYIEGDV-TDKQDLRRALQGSDVVIHTAAIIDVFGKAYRDT----IMKVNVKGTQNV 99
Query: 215 LDLAKQCKNLKMFTYVST---AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQE 271
LD + +++ Y S+ NSY + I +
Sbjct: 100 LDACVKA-GVRVLVYTSSMEVVGPNSYGQ----PIVNGD-------------------ET 135
Query: 272 TRERLSHENMNTYTLTKAAAEQLLCEE-------AQFFPVCIFRPSIVISTWKEPIPGWI 324
T +H++ Y +KA AE+L+ + C RP+ +
Sbjct: 136 TPYESTHQDP--YPESKALAEKLVLKANGSTLKNGGRLYTCALRPAGI------------ 181
Query: 325 DNLYGP------TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICA 368
+G LV + G+ + D +V +D V V A I A
Sbjct: 182 ---FGEGDPFLFPFLVRLLKNGLAKFRTGDKNVLSDRVYVGNVAWAHILA 228
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 65/275 (23%)
Query: 101 LMTGATGFLGKLLIEKLL-RSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
L+ G +GFLG+ L+E+LL R P V + + + S R+ +F
Sbjct: 3 LVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSSSGRV-----------QFHTG 51
Query: 160 TSKESAQAPDLGLSPDD--KRLVTSKVNLVFHCAA-TLRFDEELKEAIRTNMCATQTMLD 216
DL P D K N+VFH A+ +++L + N+ T+ +++
Sbjct: 52 ---------DL-TDPQDLEKAFNEKGPNVVFHTASPDHGSNDDLYY--KVNVQGTRNVIE 99
Query: 217 LAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERL 276
++C +K Y S+A S N ++II + D+
Sbjct: 100 ACRKC-GVKKLVYTSSA---SVVFNGQDII----------------NGDE------SLPY 133
Query: 277 SHENMNTYTLTKAAAEQLLCE---EAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGL 333
++ + Y TKA AE+L+ + C RP+ + PG D P GL
Sbjct: 134 PDKHQDAYNETKALAEKLVLKANDPESGLLTCALRPAGIFG------PG--DRQLVP-GL 184
Query: 334 VTGAQAGVVRTFLVDPDVKADIVPADLVVNALICA 368
+ A+ G + + D + D + V +A I A
Sbjct: 185 LKAAKNGKTKFQIGDGNNLFDFTYVENVAHAHILA 219
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
IL+TG G +G L+ ++L+ P K + V R +++ + + L + K
Sbjct: 5 ILVTGGAGSIGSELVRQILKFGP--KKLIVFDR---DENKLHELVRELRSRFPHDKLRFI 59
Query: 160 TSKESAQAPDLGLSPDDKRLVTS-----KVNLVFHCAATLRF----DEELKEAIRTNMCA 210
DK + ++VFH AA L+ ++ +EAI+TN+
Sbjct: 60 I-----------GDVRDKERLRRAFKERGPDIVFH-AAALKHVPSMEDNPEEAIKTNVLG 107
Query: 211 TQTMLDLAKQCKNLKMFTYVST 232
T+ ++D A + ++ F +ST
Sbjct: 108 TKNVIDAAIEN-GVEKFVCIST 128
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIR 75
+ +TG TGFLG+ L+++LL + V+VR++ +RI++ + ++
Sbjct: 1 VFVTGGTGFLGRHLVKRLL---ENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLE 55
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 33/151 (21%)
Query: 100 ILMTGATGFLGKLLIEKLL-RSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC 158
+ +TGATGFLG ++ LL R ++ VRAK ++ +R L+ T
Sbjct: 974 VFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLER-----------LRKTG 1022
Query: 159 ST----SKESAQ----------APDLGLSPDDKRLVTSKVNLVFHCAATLRF---DEELK 201
+T +E A GLS + +T++V+++ H A + + +L+
Sbjct: 1023 TTYGIWDEEWASRIEVVLGDLSKEKFGLSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLR 1082
Query: 202 EAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232
+A N+ T +L+L + K K F++VS+
Sbjct: 1083 DA---NVIGTINVLNLCAEGKA-KQFSFVSS 1109
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|187652 cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 52/221 (23%), Positives = 72/221 (32%), Gaps = 53/221 (23%)
Query: 101 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST 160
L+ GATG G L+E LL +Y + R P + ++++ + I
Sbjct: 3 LVVGATGISGWALVEHLLSDPGTWWKVYGLSRRPL---PTEDDPRLVEHIGI-------- 51
Query: 161 SKESAQAPDLGLSPDD-----KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTML 215
DL L P D K V VF+ A R DE E + N + L
Sbjct: 52 --------DL-LDPADTVLRAKLPGLEDVTHVFYAAYIERPDEA--ELVEVNGAMLRNFL 100
Query: 216 D-LAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRE 274
D L NLK + HY L K + +E
Sbjct: 101 DALEPASPNLKHVVLQTGTK-----------------HYGVHLGPFKTPRPEEPAREDPP 143
Query: 275 RLSHENMNTYTLTKAAAEQLLCEEAQ--FFPVCIFRPSIVI 313
RL N Y E LL E A+ + + RP +I
Sbjct: 144 RLLPPNFY-YDQ-----EDLLFEAAKGKGWTWSVLRPDAII 178
|
5beta-POR catalyzes the reduction of progesterone to 5beta-pregnane-3,20-dione in Digitalis plants. This subgroup of atypical-extended SDRs, shares the structure of an extended SDR, but has a different glycine-rich nucleotide binding motif (GXXGXXG) and lacks the YXXXK active site motif of classical and extended SDRs. Tyr-179 and Lys 147 are present in the active site, but not in the usual SDR configuration. Given these differences, it has been proposed that this subfamily represents a new SDR class. Other atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 47/247 (19%), Positives = 85/247 (34%), Gaps = 52/247 (21%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ---SPQQRIDKMLDTVAISLKF 156
+L+TGA+GF+ ++E+LL +V+ VR + +D + +++
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRA---TVRDPSKVKKVNHLLDLDAKPGRLELAV-- 55
Query: 157 TCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTML 215
T ++S G VFH A + F ++ E I+ + T L
Sbjct: 56 ADLTDEQSFDEVIKG------------CAGVFHVATPVSFSSKDPNEVIKPAIGGTLNAL 103
Query: 216 DLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQET--- 272
A K++K F S+A S + I K +V+ E
Sbjct: 104 KAAAAAKSVKRFVLTSSAGS---------------------VLIPKPNVEGIVLDEKSWN 142
Query: 273 -RERLSHENMNT--YTLTKAAAEQLLCE--EAQFFPVCIFRPSIVISTWKEPI--PGWID 325
E S + Y +K AE+ + + + P++ I T +
Sbjct: 143 LEEFDSDPKKSAWVYAASKTLAEKAAWKFADENNIDLITVIPTLTIGTIFDSETPSSSGW 202
Query: 326 NLYGPTG 332
+ TG
Sbjct: 203 AMSLITG 209
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 19 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 51
+TG TGF+G+ L+ +LL R T++V+VR
Sbjct: 4 FVTGGTGFIGRRLVSRLL-DRRREATVHVLVRR 35
|
Length = 657 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 8e-04
Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 82/247 (33%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKM--------LDTVA 151
IL+TG GF+G + LL +P K +I +DK+ L+ V+
Sbjct: 3 ILVTGGAGFIGSNFVRYLLNKYPDYK---IIN-----------LDKLTYAGNLENLEDVS 48
Query: 152 IS--LKFTCSTSKESAQAPDLGLSPDDKRLV-TSKVNLVFHCAATLRFDEELKEA---IR 205
S +F + D+ + RL K++ V H AA D + + IR
Sbjct: 49 SSPRYRF--------VKG-DICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIR 99
Query: 206 TNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVD 265
TN+ T T+L+ A++ +K F ++ST +E+ Y +LL +
Sbjct: 100 TNVLGTYTLLEAARKY-GVKRFVHIST----------DEV-------YGDLLDDGEFTET 141
Query: 266 DPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGW 323
P T + Y+ +KAAA+ L+ + + PV I R S
Sbjct: 142 SP-LAPT---------SPYSASKAAADLLVRAYHRTYGLPVVITRCS------------- 178
Query: 324 IDNLYGP 330
N YGP
Sbjct: 179 --NNYGP 183
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 54/291 (18%), Positives = 98/291 (33%), Gaps = 56/291 (19%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TGATGF+ ++E+LL++ +V+ VR + S ++ +L + +
Sbjct: 2 VLVTGATGFIASHIVEQLLKAGYKVRG---TVR---SLSKSAKLKALLKAAGYNDRL--- 52
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRF--DEELKEAIRTNMCATQTMLDL 217
E DL +P+ V+ V H A+ F + + I + T +L+
Sbjct: 53 ---EFVIVDDL-TAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDPAVEGTLNVLEA 108
Query: 218 AKQCKNLKMFTYVSTAFSNSY-RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERL 276
AK ++K S+ + ++ + S
Sbjct: 109 AKAAGSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNG-------------- 154
Query: 277 SHENMNTYTLTKAAAEQ----LLCEEAQFFPVCIFRPSIVISTWKEPI-----PGWIDNL 327
++ Y +K AE+ + E F + P V+ I+ L
Sbjct: 155 ----LDAYIASKTLAEKAAWEFVKENKPKFELITINPGYVLGPSLLADELNSSNELINKL 210
Query: 328 --YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERF 376
+ G V DV+ D+ AD V AL +RF
Sbjct: 211 LDGKLPAIPPNLPFGYV-------DVR-DV--ADAHVRALESPE-AAGQRF 250
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 545 | |||
| KOG1221|consensus | 467 | 100.0 | ||
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 100.0 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 100.0 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| KOG1502|consensus | 327 | 99.98 | ||
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.98 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.97 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.97 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.97 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.97 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.97 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.96 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.96 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.96 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.96 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.96 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.96 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.96 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.96 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.96 | |
| KOG1430|consensus | 361 | 99.96 | ||
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.96 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.96 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.96 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.96 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.96 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.96 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.95 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.95 | |
| KOG0747|consensus | 331 | 99.95 | ||
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.95 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.95 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.95 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.95 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.95 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.95 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.95 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.95 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.94 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.94 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.94 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.94 | |
| KOG1429|consensus | 350 | 99.94 | ||
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.94 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.94 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.93 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.93 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.93 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.93 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.92 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.92 | |
| KOG1371|consensus | 343 | 99.92 | ||
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.92 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.92 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.92 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.91 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.89 | |
| KOG2865|consensus | 391 | 99.87 | ||
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.86 | |
| PF03015 | 94 | Sterile: Male sterility protein; InterPro: IPR0042 | 99.83 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.83 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.83 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.79 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.79 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.78 | |
| KOG1431|consensus | 315 | 99.77 | ||
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.75 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.74 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.74 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.73 | |
| cd09071 | 92 | FAR_C C-terminal domain of fatty acyl CoA reductas | 99.73 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.72 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.71 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.71 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.7 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.69 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.68 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.68 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.67 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.67 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.67 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.66 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.66 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.66 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.66 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.66 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.65 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.65 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.65 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.64 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.64 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.64 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.62 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.61 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.61 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.6 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.6 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.59 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.59 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.59 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.58 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.58 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.57 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.56 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.56 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.56 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.56 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.56 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.56 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.55 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.55 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.55 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.54 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.54 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.53 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.53 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.53 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.53 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.53 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.52 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.51 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.51 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.51 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.51 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.51 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.5 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.5 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.49 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.49 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.49 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.49 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.48 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.48 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.48 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.48 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.48 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.47 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.47 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.47 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.47 | |
| KOG2774|consensus | 366 | 99.47 | ||
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.47 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.46 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.46 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.45 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.45 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.45 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.44 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.44 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.44 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.44 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.44 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.43 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.43 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.42 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.42 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.42 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.42 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.41 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.41 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.4 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.4 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.4 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.4 | |
| KOG4039|consensus | 238 | 99.39 | ||
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.39 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.38 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.38 | |
| KOG1372|consensus | 376 | 99.38 | ||
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.37 | |
| KOG1205|consensus | 282 | 99.37 | ||
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.37 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.37 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.36 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.36 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.35 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.35 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.35 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.35 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.35 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.34 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.33 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.32 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.32 | |
| KOG1201|consensus | 300 | 99.31 | ||
| KOG4288|consensus | 283 | 99.31 | ||
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.31 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.3 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.3 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.29 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.29 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.28 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.27 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.27 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.27 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.27 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.26 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.26 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.26 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.25 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.25 | |
| KOG3019|consensus | 315 | 99.25 | ||
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.25 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.23 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.22 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.22 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.2 | |
| KOG1221|consensus | 467 | 99.19 | ||
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.19 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.17 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.16 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.16 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.15 | |
| KOG1203|consensus | 411 | 99.15 | ||
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.15 | |
| KOG1200|consensus | 256 | 99.01 | ||
| KOG1208|consensus | 314 | 99.0 | ||
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 98.99 | |
| PLN00015 | 308 | protochlorophyllide reductase | 98.99 | |
| KOG0725|consensus | 270 | 98.98 | ||
| KOG1611|consensus | 249 | 98.96 | ||
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.94 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 98.94 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 98.94 | |
| KOG4169|consensus | 261 | 98.93 | ||
| KOG1610|consensus | 322 | 98.91 | ||
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 98.81 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 98.8 | |
| KOG1207|consensus | 245 | 98.79 | ||
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 98.77 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 98.75 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.73 | |
| KOG1209|consensus | 289 | 98.73 | ||
| PLN02996 | 491 | fatty acyl-CoA reductase | 98.62 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 98.61 | |
| KOG1210|consensus | 331 | 98.43 | ||
| KOG1014|consensus | 312 | 98.42 | ||
| KOG1204|consensus | 253 | 98.41 | ||
| PLN00106 | 323 | malate dehydrogenase | 98.4 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.39 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.07 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.04 | |
| KOG1478|consensus | 341 | 97.85 | ||
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 97.83 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 97.83 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.82 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.78 | |
| KOG1199|consensus | 260 | 97.74 | ||
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.57 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 97.41 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 97.27 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.27 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 97.2 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 97.17 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.12 | |
| KOG1178|consensus | 1032 | 97.09 | ||
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.06 | |
| KOG1202|consensus | 2376 | 97.02 | ||
| KOG2733|consensus | 423 | 96.91 | ||
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.9 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.75 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 96.72 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.71 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.65 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.65 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.6 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 96.41 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.25 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.23 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 96.18 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.02 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 96.0 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.78 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.76 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.76 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.65 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 95.56 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 95.51 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.5 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.28 | |
| KOG1494|consensus | 345 | 95.24 | ||
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 95.23 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.16 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 95.03 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 94.83 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 94.77 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.76 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.63 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.54 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.43 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 94.41 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 94.2 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.1 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 94.06 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 93.99 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 93.89 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 93.87 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.84 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 93.8 | |
| PRK08223 | 287 | hypothetical protein; Validated | 93.8 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 93.78 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 93.66 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 93.64 | |
| KOG1496|consensus | 332 | 93.48 | ||
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 93.45 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 93.39 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 93.22 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.21 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 93.18 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 93.18 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 93.16 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 92.95 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 92.84 | |
| PLN02602 | 350 | lactate dehydrogenase | 92.77 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 92.73 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 92.67 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 92.64 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 92.5 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 92.49 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 92.44 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 92.4 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 92.06 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 92.0 | |
| KOG4022|consensus | 236 | 91.84 | ||
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 91.76 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 91.42 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 91.35 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 91.22 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 91.11 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.07 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 91.02 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.95 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 90.42 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 90.29 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 90.27 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 90.18 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 90.08 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 89.98 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 89.91 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.74 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 89.64 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 89.37 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 89.28 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 89.14 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 88.81 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 88.45 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 88.38 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 88.36 | |
| PRK07411 | 390 | hypothetical protein; Validated | 88.21 | |
| KOG1198|consensus | 347 | 87.73 | ||
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 87.7 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 87.68 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 87.58 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 87.54 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 87.44 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 87.39 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 87.38 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.33 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 87.12 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 86.9 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 86.83 | |
| KOG2013|consensus | 603 | 86.83 | ||
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 86.64 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 86.64 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 86.52 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 86.33 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 86.12 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 85.8 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 85.66 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 85.48 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 85.25 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 84.9 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 84.57 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 84.55 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.27 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.26 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 84.22 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 84.19 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.12 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 83.8 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 83.75 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 83.7 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 83.53 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 83.36 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.25 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 82.92 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 82.87 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 82.85 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 82.77 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 82.72 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 82.43 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 82.3 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.25 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 81.94 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 81.88 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 81.59 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 81.44 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 81.2 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 80.81 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 80.71 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 80.67 | |
| KOG0023|consensus | 360 | 80.67 | ||
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 80.51 |
| >KOG1221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-83 Score=640.87 Aligned_cols=446 Identities=37% Similarity=0.595 Sum_probs=422.9
Q ss_pred CCchhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCccc---
Q psy16252 88 PPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKE--- 163 (545)
Q Consensus 88 ~~~~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~--- 163 (545)
.+++.+|+++|+|||||||||+|+.|+++|++..+++++||.++|++++.++.+|+.....+ +|+.+++.+++.++
T Consensus 3 ~~~i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~ 82 (467)
T KOG1221|consen 3 ISDIVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVV 82 (467)
T ss_pred cccHHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecce
Confidence 34588999999999999999999999999999999999999999999999999999999998 99999988877655
Q ss_pred ----CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC
Q psy16252 164 ----SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 164 ----Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~ 239 (545)
|++++++|+++++++.+.++||+|||+||.++|+++++....+|+.||++++++|+++.+++.|+|+||+|+++..
T Consensus 83 pi~GDi~~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~ 162 (467)
T KOG1221|consen 83 PIAGDISEPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNV 162 (467)
T ss_pred eccccccCcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CcccccccCCCC--CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCC
Q psy16252 240 KNIEEIIYKAHT--HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 240 ~~i~E~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~ 317 (545)
..++|+.|+.+. +++.+++..+| ++++.+++.++.+.++|||+|++||+++|+++.+.+.++|++|+||++|.+.+.
T Consensus 163 ~~i~E~~y~~~~~~~~~~~i~~~~~-~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~~lPivIiRPsiI~st~~ 241 (467)
T KOG1221|consen 163 GHIEEKPYPMPETCNPEKILKLDEN-LSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAENLPLVIIRPSIITSTYK 241 (467)
T ss_pred ccccccccCccccCCHHHHHhhhcc-chHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhccCCCeEEEcCCceecccc
Confidence 899999999988 89999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCccc
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLT 397 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t 397 (545)
+|+|||.+|.+++.+++.++++|.++.+.++++...|+||||+||++++++++..... .+.....+||++++..|+++
T Consensus 242 EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~--~~~~~~~IY~~tss~~Np~t 319 (467)
T KOG1221|consen 242 EPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGN--SKEKTPPIYHLTSSNDNPVT 319 (467)
T ss_pred CCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhcc--CCCCCCcEEEecccccCccc
Confidence 9999999999999999999999999999999999999999999999999888654430 11134679999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCccccCcceeecCcchhh-hHHHHHhHHHHhhhhccC--CC-CchhHH----Hhhhcc
Q psy16252 398 WGEFITKSLKEGVKIPSSQTRTNLLQDGQGSVRSRTIQYP-GVGVGQLQRAVHVDPSTR--GG-PGSISV----QYSGPR 469 (545)
Q Consensus 398 ~~el~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~p~~~~d~~~~--G~-~~~~~~----~~~~~~ 469 (545)
|.++.+.....+.+.|+... +|+|...+..+.|.+. ..+++|++|++++|++++ |+ |.+.++ ++...+
T Consensus 320 ~~~~~e~~~~~~~~~Pl~~~----iw~P~~~~~sn~~~f~~~~~~~h~lPa~~~d~~~~i~g~k~~~~k~~~ki~~~~~~ 395 (467)
T KOG1221|consen 320 WGDFIELALRYFEKIPLEKM----IWYPFGTLTSNPWLFNLAAFLYHTLPAYILDLLLRLLGKKPRLVKLYRKIHKLVKL 395 (467)
T ss_pred HHHHHHHHHHhcccCCcccc----eeccCceeeecHhHHHHHHHHHHHhhHHHHHHHHHHhCCChhhhHHHHHHHHHHHh
Confidence 99999999999999999999 9999999999999999 999999999999999999 88 887776 888999
Q ss_pred ccccccCeeEeecchHHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHh
Q psy16252 470 LGRLSAREWEWDNSNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLDPVTRQKAWKR 540 (545)
Q Consensus 470 ~~~f~~~~~~f~~~~~~~l~~~~~~~d~~~f~~d~~~~~w~~y~~~~~~g~~~~~~ke~~~~~~~~~~~~~ 540 (545)
++||+.++|.|+++|+.+|+..|+++|++.|+||+..+||++|+.+|+.|+|+|++||+++++|+||++.+
T Consensus 396 l~~f~~~~w~Fd~~n~~~L~~~~~~~d~~~f~fd~~~ldW~ey~~~~i~G~r~~llKe~~e~l~~~r~~~k 466 (467)
T KOG1221|consen 396 LEPFSLFKWIFDNKNTEKLREKMSEEDKRLFNFDMKQLDWEEYFNRHLLGLRKYLLKESPESLPQARKRLK 466 (467)
T ss_pred hhhheeceEEecCccHHHHHHhCCHHHHhhcCCCcccCCHHHHHHHHHHHHHHHHhcCChhhhHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998744
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-69 Score=564.49 Aligned_cols=435 Identities=26% Similarity=0.394 Sum_probs=373.4
Q ss_pred CCchhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH-hhHHH-HHHhhhh---------
Q psy16252 88 PPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID-KMLDT-VAISLKF--------- 156 (545)
Q Consensus 88 ~~~~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-~~~~~-~~~~~~~--------- 156 (545)
.+++.+|+++|+|||||||||||++|+++|++.++++.+|+||+|+++..++.+|+. ++... +|+.++.
T Consensus 2 ~~~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~ 81 (491)
T PLN02996 2 EGSCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSL 81 (491)
T ss_pred cccHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhh
Confidence 357899999999999999999999999999998889999999999999999999986 45555 7765544
Q ss_pred --cCCCccc-CCCCCCCCCCHHH-HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 157 --TCSTSKE-SAQAPDLGLSPDD-KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 157 --~~~~~~~-Dl~~~~lgl~~~~-~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
.++.++. |+++++|||+..+ ++.+++++|+|||+||.+++..+++...++|+.||.+++++|++++++++|||+||
T Consensus 82 ~~~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST 161 (491)
T PLN02996 82 ISEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVST 161 (491)
T ss_pred hhcCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence 2344555 9999999997766 67888999999999999998888889999999999999999998767899999999
Q ss_pred cccccCCC-cccccccCCCC--------CHH--------HHHHhhhccCCchhHHH------hhhhhcCCCCchHHHHHH
Q psy16252 233 AFSNSYRK-NIEEIIYKAHT--------HYS--------ELLKISKLDVDDPKYQE------TRERLSHENMNTYTLTKA 289 (545)
Q Consensus 233 ~~v~~~~~-~i~E~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Y~~sK~ 289 (545)
++++|... .++|+.|+.+. +++ .+.+..++.++++.++. .++....++||+|+.||+
T Consensus 162 ~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~ 241 (491)
T PLN02996 162 AYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKA 241 (491)
T ss_pred eEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHH
Confidence 99998754 67888887544 343 23333344355555542 456667889999999999
Q ss_pred HHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcc
Q psy16252 290 AAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAP 369 (545)
Q Consensus 290 ~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~ 369 (545)
+||+++.++..++|++|+||++|+|++++|.+||++++.++..++.++..|.++.++++++..+|+|||||||++++.++
T Consensus 242 ~aE~lv~~~~~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~ 321 (491)
T PLN02996 242 MGEMLLGNFKENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAM 321 (491)
T ss_pred HHHHHHHHhcCCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHH
Confidence 99999998878999999999999999999999999999998999998899999889999999999999999999999998
Q ss_pred cccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhcccCCCCCCCCccccCcceeecCcchhh-hHHHHHhHHHH
Q psy16252 370 WNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQTRTNLLQDGQGSVRSRTIQYP-GVGVGQLQRAV 448 (545)
Q Consensus 370 ~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~p~~ 448 (545)
+.... ....+++||++++..+++||.++++.+.+.++..|+...++.++|+|.+.+..+.|.|. ..++.+.+|++
T Consensus 322 ~~~~~----~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~lp~~ 397 (491)
T PLN02996 322 AAHAG----GQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPWINKEGSPVKVGKGTILSTMASFSLYMTIRYLLPLK 397 (491)
T ss_pred HHhhc----cCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCCcCCCCCeEeeCCceecCcHHHHHHHHHHHHHhHHH
Confidence 76321 01136799999887789999999999999999999886555669999999999999999 78888889988
Q ss_pred hhhhccC----CC-CchhHH-------HhhhccccccccCeeEeecchHHHHHhhCCCCC---CccccCCCCCCCHHHHH
Q psy16252 449 HVDPSTR----GG-PGSISV-------QYSGPRLGRLSAREWEWDNSNVQSMWTLVPAGD---RVRFPFNIRDLDWDDYL 513 (545)
Q Consensus 449 ~~d~~~~----G~-~~~~~~-------~~~~~~~~~f~~~~~~f~~~~~~~l~~~~~~~d---~~~f~~d~~~~~w~~y~ 513 (545)
.+|.+.. |+ |++.++ +++.+++++|+.++|.|+++|+++|+..|+++| ++.|+||+..+||++|+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~w~f~~~n~~~l~~~~~~~d~~d~~~f~~d~~~~~w~~y~ 477 (491)
T PLN02996 398 ALQLVNIILPKRYGDKYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDFDPKSIDWEDYM 477 (491)
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHhhccccceEEEccHHHHHHHHHCCccccccccEeccCcccCCHHHHH
Confidence 8866655 45 887766 444899999999999999999999999999955 99999999999999999
Q ss_pred HH-HHHHHHHHhcC
Q psy16252 514 RA-YVRGTLVHHLQ 526 (545)
Q Consensus 514 ~~-~~~g~~~~~~k 526 (545)
++ |+.|+|+|++|
T Consensus 478 ~~~~~~g~~~y~~k 491 (491)
T PLN02996 478 TNVHIPGLVKYVLK 491 (491)
T ss_pred HHhhHHHHHHHhcC
Confidence 99 99999999987
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-68 Score=558.01 Aligned_cols=434 Identities=27% Similarity=0.416 Sum_probs=363.1
Q ss_pred CCCchhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH-hhHHH-HHHhhhhcCCC----
Q psy16252 87 SPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID-KMLDT-VAISLKFTCST---- 160 (545)
Q Consensus 87 ~~~~~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-~~~~~-~~~~~~~~~~~---- 160 (545)
+.-.+.+|+++++|||||||||||++|+++|++.++++.+|++|+|+++..++.+|+. +++.. +|+.+++....
T Consensus 109 ~~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~ 188 (605)
T PLN02503 109 DGIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQS 188 (605)
T ss_pred CCcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccc
Confidence 4567899999999999999999999999999998888999999999999889999996 45566 88877664432
Q ss_pred -------ccc-CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 161 -------SKE-SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 161 -------~~~-Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
.+. |+++++|||+++.++.+.+++|+|||+||.+++..+++...++|+.||.+++++|++++++++|||+||
T Consensus 189 ~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vST 268 (605)
T PLN02503 189 FMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVST 268 (605)
T ss_pred cccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccC
Confidence 233 999999999999999999999999999999999888999999999999999999999867899999999
Q ss_pred cccccCCC-cccccccC-------------------CCCCHHHHHHhh--hcc---CCchhHHH-----hhhhhcCCCCc
Q psy16252 233 AFSNSYRK-NIEEIIYK-------------------AHTHYSELLKIS--KLD---VDDPKYQE-----TRERLSHENMN 282 (545)
Q Consensus 233 ~~v~~~~~-~i~E~~~~-------------------~~~~~~~~~~~~--~~~---~~~~~~~~-----~~~~~~~~~~~ 282 (545)
+++++... .+.|+.|+ .+.++++.++.. ++. .+++..+. ++++...+|||
T Consensus 269 ayVyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pN 348 (605)
T PLN02503 269 AYVNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQD 348 (605)
T ss_pred ceeecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCC
Confidence 99999974 89999997 456788777665 221 22233333 56778899999
Q ss_pred hHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHH
Q psy16252 283 TYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVV 362 (545)
Q Consensus 283 ~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva 362 (545)
+|++||++||+++.++..++|++|+||++|.+.+.+|+|||.++.......+..+.+|.++.++++++...|+||||.||
T Consensus 349 tYt~TK~lAE~lV~~~~~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vv 428 (605)
T PLN02503 349 TYVFTKAMGEMVINSMRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVV 428 (605)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHH
Confidence 99999999999999887899999999999999999999999999544444444556899999999999999999999999
Q ss_pred HHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhcccCCCCCCCCccccCcceeecCcchhh-hHHH
Q psy16252 363 NALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQTRTNLLQDGQGSVRSRTIQYP-GVGV 441 (545)
Q Consensus 363 ~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~ 441 (545)
++++++++.... .....+++||++++..+|++|.++.+.+.+++.+.|+... .|.|. ......+.+. ..++
T Consensus 429 na~i~a~a~~~~---~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~P~~~~----~~~~~-~~~~~~~~~~~~~~~ 500 (605)
T PLN02503 429 NATLAAMAKHGG---AAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSSPYMDS----KGRPI-HVPPMKLFSSMEDFS 500 (605)
T ss_pred HHHHHHHHhhhc---ccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhCCcccc----cCcce-eccCceehhhHHHHH
Confidence 999999543222 1112478999998888999999999999999999999888 77776 3355666666 6666
Q ss_pred HHhHHHHhhhhccC---CC-CchhHH------------HhhhccccccccCeeEeecchHHHHHhhCCCCCCccccCCCC
Q psy16252 442 GQLQRAVHVDPSTR---GG-PGSISV------------QYSGPRLGRLSAREWEWDNSNVQSMWTLVPAGDRVRFPFNIR 505 (545)
Q Consensus 442 ~~~~p~~~~d~~~~---G~-~~~~~~------------~~~~~~~~~f~~~~~~f~~~~~~~l~~~~~~~d~~~f~~d~~ 505 (545)
.|++-..+...... |+ |++.+. .++.++++||+.++|.|+++|+++|++.|+++|++.|+||+.
T Consensus 501 ~h~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~ms~~Dr~~F~~D~~ 580 (605)
T PLN02503 501 SHLWRDALLRSGLAGMSSSDRKLSQKLENICAKSVEQAKYLASIYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDVG 580 (605)
T ss_pred HHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHHHHHHHHHHhhheeCeEEEechHHHHHHHhCCHHHhhccCCCcC
Confidence 66543333333211 34 665554 338889999999999999999999999999999999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHhcCCC
Q psy16252 506 DLDWDDYLRA-YVRGTLVHHLQDK 528 (545)
Q Consensus 506 ~~~w~~y~~~-~~~g~~~~~~ke~ 528 (545)
.+||++|+++ |+.|+|||++|+.
T Consensus 581 ~idW~~Y~~~~~i~G~rky~lk~~ 604 (605)
T PLN02503 581 SIDWRDYITNVHIPGLRRHVMKGR 604 (605)
T ss_pred CCCHHHHHHHhhhhHHHHHHhccC
Confidence 9999999998 9999999999984
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=310.23 Aligned_cols=239 Identities=36% Similarity=0.543 Sum_probs=162.3
Q ss_pred EeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH--HHHhhh---hcCCCccc-CCCCCCCCCCHH
Q psy16252 102 MTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT--VAISLK---FTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 102 ITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~--~~~~~~---~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|||||||||++|+++|+++++.+ +|+||+|+++..++.+|+.+.+.. ++.... ..++.++. |+++++|||+++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~-~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDV-KIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TT-EEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCc-EEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence 79999999999999999997655 999999998877888999876665 565543 56777777 999999999999
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-cccccccCCCCCHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-NIEEIIYKAHTHYS 254 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-~i~E~~~~~~~~~~ 254 (545)
++..+.+++|+||||||.+++..+++.++++||.||++++++|.+. +.++|+|+||+++.+... .+.|+.++
T Consensus 80 ~~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~-~~~~~~~iSTa~v~~~~~~~~~~~~~~------ 152 (249)
T PF07993_consen 80 DYQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQG-KRKRFHYISTAYVAGSRPGTIEEKVYP------ 152 (249)
T ss_dssp HHHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSS-S---EEEEEEGGGTTS-TTT--SSS-H------
T ss_pred HhhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhc-cCcceEEeccccccCCCCCcccccccc------
Confidence 9999999999999999999999999999999999999999999986 556999999977776654 33333211
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCcc-chH
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLY-GPT 331 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~-~~~ 331 (545)
..+........++++|.+|||+||++++++. .|+|++|+|||+|+|. +.+||..... .+.
T Consensus 153 --------------~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~---~~~G~~~~~~~~~~ 215 (249)
T PF07993_consen 153 --------------EEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGD---SRTGWWNSDDFFPY 215 (249)
T ss_dssp --------------HH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-S---SSSS---TTBHHHH
T ss_pred --------------cccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCccccc---CCCceeeccchHHH
Confidence 0011111234667999999999999999998 4999999999999995 4456666655 455
Q ss_pred HHHHHHhcCceeEEecCCCCcccceehHHHHHHH
Q psy16252 332 GLVTGAQAGVVRTFLVDPDVKADIVPADLVVNAL 365 (545)
Q Consensus 332 ~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai 365 (545)
.+...+..|..+..++.++..+|++|||+||++|
T Consensus 216 ~~~~~~~~~~~p~~~~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 216 LLRSCIALGAFPDLPGDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp HHHHHHHH-EEES-SB---TT--EEEHHHHHHHH
T ss_pred HHHHHHHcCCcccccCCCCceEeEECHHHHHhhC
Confidence 5666667788777777778889999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=290.92 Aligned_cols=280 Identities=24% Similarity=0.293 Sum_probs=209.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH--HHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT--VAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~--~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++||+||||||+|++|+++|+..-+ .+|+|++|.++.+.+.+|+++.+.. .|+..-+++++.+. |++++++||+.
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~--~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~ 78 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSE 78 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC--CcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCH
Confidence 4799999999999999999999733 6899999999999999999998875 77777777888777 99999999999
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHH
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYS 254 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~ 254 (545)
..+..|.+.+|.|||+||.+++..+|+++...||.||.+++++|... +.|+|+||||+++......-..+.-
T Consensus 79 ~~~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~g-k~Kp~~yVSsisv~~~~~~~~~~~~------- 150 (382)
T COG3320 79 RTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATG-KPKPLHYVSSISVGETEYYSNFTVD------- 150 (382)
T ss_pred HHHHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcC-CCceeEEEeeeeeccccccCCCccc-------
Confidence 99999999999999999999999999999999999999999999985 8899999999999876432111100
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCCCCCCCCccCccchHHH
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGL 333 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~ 333 (545)
.++ ...+....+...++|++|||.+|.+++++. .|+|++|+|||.|.|++.++.- ... .....+
T Consensus 151 ---------~~~---~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~rGLpv~I~Rpg~I~gds~tG~~--n~~-D~~~Rl 215 (382)
T COG3320 151 ---------FDE---ISPTRNVGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYITGDSRTGAL--NTR-DFLTRL 215 (382)
T ss_pred ---------ccc---ccccccccCccCCCcchhHHHHHHHHHHHhhcCCCeEEEecCeeeccCccCcc--ccc-hHHHHH
Confidence 000 000011223455899999999999999998 8999999999999999875432 111 112344
Q ss_pred HHHH-hcCceeEEecCCCCcccceehHHHHHHHHhcccccccc----cCCCCCCCCEEEeecCCCCcccHHHHHHHHHH
Q psy16252 334 VTGA-QAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHER----FHKDPSCLPIYNYVNSKDNPLTWGEFITKSLK 407 (545)
Q Consensus 334 ~~~~-~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~----~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~ 407 (545)
+..+ ..|..+ +.....+++|+|.+++++...+...... -+++...-..|+ .++....+...++.+++..
T Consensus 216 v~~~~~lg~~P----~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~-~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 216 VLGLLQLGIAP----DSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLH-MLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred HHHHHHhCCCC----CcccchhhCccceeeEEeehhhhhHHHHHHHhccCccchhhhee-cccCCCccchhHHHHhHhh
Confidence 3333 234433 4466778888887777766554443210 001111224455 2233378999999999887
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=271.72 Aligned_cols=256 Identities=20% Similarity=0.238 Sum_probs=191.3
Q ss_pred EEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHHHH
Q psy16252 101 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDKRL 179 (545)
Q Consensus 101 lITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~~~ 179 (545)
|||||+||||++|+++|+++|+ +..|.+++|........ .+.. . ...+++. |++ +.+++.+
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~~~~~-~~~~--------~--~~~~~~~~Di~------d~~~l~~ 62 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPPKFLK-DLQK--------S--GVKEYIQGDIT------DPESLEE 62 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCC-ceEEEEcccccccccch-hhhc--------c--cceeEEEeccc------cHHHHHH
Confidence 6999999999999999999975 56788888876542210 0000 0 0111444 888 7789999
Q ss_pred HhcCccEEEEccccccch--HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC---CCcc---cccccCCCC
Q psy16252 180 VTSKVNLVFHCAATLRFD--EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY---RKNI---EEIIYKAHT 251 (545)
Q Consensus 180 l~~~vd~Vih~Aa~~~~~--~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~---~~~i---~E~~~~~~~ 251 (545)
+++++|+|||+|+.+... .+.+.++++||.||+|++++|++. ++++|||+||.+++++ ..++ +|..
T Consensus 63 a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~-~VkrlVytSS~~vv~~~~~~~~~~~~dE~~----- 136 (280)
T PF01073_consen 63 ALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKA-GVKRLVYTSSISVVFDNYKGDPIINGDEDT----- 136 (280)
T ss_pred HhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcCcceeEeccCCCCcccCCcCC-----
Confidence 999999999999987654 356789999999999999999997 9999999999998876 2221 1211
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhcc-------CCCEEEEccceeeccCCCCCCCCc
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQ-------FFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~-------~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
+ ....+.+.|+.||++||++++++.. .+.++++||+.|||+.....
T Consensus 137 ----------------------~-~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~---- 189 (280)
T PF01073_consen 137 ----------------------P-YPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRL---- 189 (280)
T ss_pred ----------------------c-ccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccc----
Confidence 0 1112447899999999999999852 38999999999999865321
Q ss_pred cCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCccc-HHHHHH
Q psy16252 325 DNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLT-WGEFIT 403 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t-~~el~~ 403 (545)
...+......|......+++....++++|+|||.|++.|+.............|+.|+|+++ +|++ +.|+++
T Consensus 190 -----~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~--~p~~~~~~f~~ 262 (280)
T PF01073_consen 190 -----VPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDG--EPVPSFWDFMR 262 (280)
T ss_pred -----cchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECC--CccCcHHHHHH
Confidence 12233344455455567788889999999999999999876544310123456899999999 8999 999999
Q ss_pred HHHHhhcccCC
Q psy16252 404 KSLKEGVKIPS 414 (545)
Q Consensus 404 ~l~~~~~~~~~ 414 (545)
.+.+.+|..+.
T Consensus 263 ~~~~~~G~~~~ 273 (280)
T PF01073_consen 263 PLWEALGYPPP 273 (280)
T ss_pred HHHHHCCCCCC
Confidence 99999887543
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=250.27 Aligned_cols=254 Identities=20% Similarity=0.174 Sum_probs=200.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+||||||.||||+|.+.+|++.|++ |+++.+-..+.. +.+. ...+++++ |+. |.+.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~---vvV~DNL~~g~~--~~v~-----------~~~~~f~~gDi~------D~~~ 58 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHE---VVVLDNLSNGHK--IALL-----------KLQFKFYEGDLL------DRAL 58 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCe---EEEEecCCCCCH--HHhh-----------hccCceEEeccc------cHHH
Confidence 57999999999999999999999874 556655544321 1111 00134555 887 6777
Q ss_pred HHHHhc--CccEEEEccccccchHH---HHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCC
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFDEE---LKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKA 249 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~~~---~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~ 249 (545)
+.++++ ++|.|||.||.....++ +-++++.||.||.+|++++++. ++++|||.||+++||... +|.|+....
T Consensus 59 L~~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~-gv~~~vFSStAavYG~p~~~PI~E~~~~~ 137 (329)
T COG1087 59 LTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQT-GVKKFIFSSTAAVYGEPTTSPISETSPLA 137 (329)
T ss_pred HHHHHHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHh-CCCEEEEecchhhcCCCCCcccCCCCCCC
Confidence 888886 78999999998765544 4578899999999999999998 899999999999999865 677776554
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCC-CCCCccC
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEP-IPGWIDN 326 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~-~~g~~~~ 326 (545)
|. |+|+.||++.|++++.+. .+++++++|..++.|...++ +..|..+
T Consensus 138 p~------------------------------NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~ 187 (329)
T COG1087 138 PI------------------------------NPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPG 187 (329)
T ss_pred CC------------------------------CcchhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCC
Confidence 43 899999999999999887 78999999999999987665 3445556
Q ss_pred ccchHHHHHHHhcCceeE--Eec------CCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccH
Q psy16252 327 LYGPTGLVTGAQAGVVRT--FLV------DPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTW 398 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~--~~~------~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~ 398 (545)
......++..+..|.... ++| |+...+|+|||.|+|+|++.|+..... .....+||++++ +..|.
T Consensus 188 ~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~-----~g~~~~~NLG~G--~G~SV 260 (329)
T COG1087 188 ATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKE-----GGSNNIFNLGSG--NGFSV 260 (329)
T ss_pred cchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHh-----CCceeEEEccCC--CceeH
Confidence 655566666666666542 333 567899999999999999999887653 112369999999 89999
Q ss_pred HHHHHHHHHhhcc
Q psy16252 399 GEFITKSLKEGVK 411 (545)
Q Consensus 399 ~el~~~l~~~~~~ 411 (545)
.|+++.+.+..|+
T Consensus 261 ~evi~a~~~vtg~ 273 (329)
T COG1087 261 LEVIEAAKKVTGR 273 (329)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999885
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=270.64 Aligned_cols=264 Identities=17% Similarity=0.105 Sum_probs=190.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|||||||||||++|+++|++.|+ +|++++|...... ..+....... .........++. |+. +
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~---~V~~~d~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~Di~------d 80 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQ---TVIGLDNFSTGYQ--HNLDDVRTSV-SEEQWSRFIFIQGDIR------K 80 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCCCcch--hhhhhhhhcc-ccccCCceEEEEccCC------C
Confidence 4569999999999999999999999875 6888888643221 1111110000 000001223344 777 5
Q ss_pred HHHHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
.+.+..+++++|+|||+||..... .......++|+.||.+++++|++. ++++|||+||+++++... ++.|+...
T Consensus 81 ~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 159 (348)
T PRK15181 81 FTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVSSFTYAASSSTYGDHPDLPKIEERIG 159 (348)
T ss_pred HHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeechHhhCCCCCCCCCCCCCC
Confidence 677888889999999999975432 334567899999999999999997 899999999999988532 22232211
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
.| .+.|+.||..+|+++..+. .+++++++||++|||++..+.... ..
T Consensus 160 ~p------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~-~~ 208 (348)
T PRK15181 160 RP------------------------------LSPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAY-SA 208 (348)
T ss_pred CC------------------------------CChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCcc-cc
Confidence 11 1679999999999998765 689999999999999876532111 01
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
....++..+..|....+++++++..|++||+|+|++++.++..... ...+++||++++ +++|++|+++.+.
T Consensus 209 --~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~-----~~~~~~yni~~g--~~~s~~e~~~~i~ 279 (348)
T PRK15181 209 --VIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDL-----ASKNKVYNVAVG--DRTSLNELYYLIR 279 (348)
T ss_pred --CHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcccc-----cCCCCEEEecCC--CcEeHHHHHHHHH
Confidence 1234555556666556678899999999999999999887653211 013689999998 8899999999999
Q ss_pred Hhhcc
Q psy16252 407 KEGVK 411 (545)
Q Consensus 407 ~~~~~ 411 (545)
+..+.
T Consensus 280 ~~~~~ 284 (348)
T PRK15181 280 DGLNL 284 (348)
T ss_pred HHhCc
Confidence 88764
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=248.10 Aligned_cols=262 Identities=21% Similarity=0.242 Sum_probs=198.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+++|+|||||||||++|++.||++|| .|.+.+|++......+.+.+.-. . .++...+. |+. +.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY---~V~gtVR~~~~~k~~~~L~~l~~-----a-~~~l~l~~aDL~------d~ 69 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY---TVRGTVRDPEDEKKTEHLRKLEG-----A-KERLKLFKADLL------DE 69 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC---EEEEEEcCcchhhhHHHHHhccc-----C-cccceEEecccc------cc
Confidence 469999999999999999999999988 69999999765333222222110 0 11233333 887 56
Q ss_pred HHHHHHhcCccEEEEccccccchHH--HHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC-C------ccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEE--LKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR-K------NIEEI 245 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~--~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~-~------~i~E~ 245 (545)
+.+.+++++||.|||+|..+.++.. ..++.+.+|.||.|++++|++.+.++|+|++||+++.... . .++|+
T Consensus 70 ~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~ 149 (327)
T KOG1502|consen 70 GSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEE 149 (327)
T ss_pred chHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccc
Confidence 6899999999999999999877533 4578999999999999999998679999999999876543 2 23333
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
. | +|...-.-+. +.|..||.+||+..++++ .+++.+.+-|+.|+||.-.|
T Consensus 150 ~---------------w--sd~~~~~~~~-------~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~---- 201 (327)
T KOG1502|consen 150 S---------------W--SDLDFCRCKK-------LWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQP---- 201 (327)
T ss_pred c---------------C--CcHHHHHhhH-------HHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCccc----
Confidence 2 2 2222211111 679999999999999998 78999999999999986554
Q ss_pred ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHH
Q psy16252 324 IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFIT 403 (545)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~ 403 (545)
.......++....+|..... .+....+|||+|||+|++.+++++.. .+.|+|++. ..++.|+++
T Consensus 202 --~l~~s~~~~l~~i~G~~~~~---~n~~~~~VdVrDVA~AHv~a~E~~~a--------~GRyic~~~---~~~~~ei~~ 265 (327)
T KOG1502|consen 202 --SLNSSLNALLKLIKGLAETY---PNFWLAFVDVRDVALAHVLALEKPSA--------KGRYICVGE---VVSIKEIAD 265 (327)
T ss_pred --ccchhHHHHHHHHhcccccC---CCCceeeEeHHHHHHHHHHHHcCccc--------CceEEEecC---cccHHHHHH
Confidence 23344556667777765432 34555699999999999999999887 689999986 456999999
Q ss_pred HHHHhhcccCCCC
Q psy16252 404 KSLKEGVKIPSSQ 416 (545)
Q Consensus 404 ~l~~~~~~~~~~~ 416 (545)
.+.+.+...+++.
T Consensus 266 ~l~~~~P~~~ip~ 278 (327)
T KOG1502|consen 266 ILRELFPDYPIPK 278 (327)
T ss_pred HHHHhCCCCCCCC
Confidence 9999987766443
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-31 Score=242.87 Aligned_cols=255 Identities=18% Similarity=0.098 Sum_probs=202.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|++|||||.||||+..++.+++..++ .+|+++..-.-.. ..+.+.. ....++..+++ |++ |.+.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~DkLTYAg-n~~~l~~-------~~~~~~~~fv~~DI~------D~~~ 65 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDKLTYAG-NLENLAD-------VEDSPRYRFVQGDIC------DREL 65 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCC-ceEEEEecccccC-CHHHHHh-------hhcCCCceEEecccc------CHHH
Confidence 57999999999999999999998665 4677775542221 1222221 12223455666 888 6788
Q ss_pred HHHHhc--CccEEEEccccccchHH---HHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC----ccccccc
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFDEE---LKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK----NIEEIIY 247 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~~~---~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~----~i~E~~~ 247 (545)
+.++++ .+|+|+|.||..+.+.+ +..+.++||.||.+|+++|++.....+|+|+||.-|||+.. .++|+..
T Consensus 66 v~~~~~~~~~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp 145 (340)
T COG1088 66 VDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTP 145 (340)
T ss_pred HHHHHHhcCCCeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCC
Confidence 888888 69999999999876544 57899999999999999999974335999999999999743 2334332
Q ss_pred CCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCcc
Q psy16252 248 KAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
-.| .++|++||+.+..+++.+. .|+|++|.|+++-|||.+.|-.
T Consensus 146 ~~P------------------------------sSPYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpEK---- 191 (340)
T COG1088 146 YNP------------------------------SSPYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEK---- 191 (340)
T ss_pred CCC------------------------------CCCcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchh----
Confidence 222 1789999999999999987 8999999999999999877621
Q ss_pred CccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHH
Q psy16252 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKS 405 (545)
Q Consensus 326 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l 405 (545)
-...++..+..|....++|++.+.+||++|+|-|+|+-.++.+... |++||++++ +..+--++++.+
T Consensus 192 ---lIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg~~--------GE~YNIgg~--~E~~Nlevv~~i 258 (340)
T COG1088 192 ---LIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKGKI--------GETYNIGGG--NERTNLEVVKTI 258 (340)
T ss_pred ---hhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHhcCcC--------CceEEeCCC--ccchHHHHHHHH
Confidence 1234567778888888999999999999999999999999988776 899999998 788999999999
Q ss_pred HHhhcccCC
Q psy16252 406 LKEGVKIPS 414 (545)
Q Consensus 406 ~~~~~~~~~ 414 (545)
.+.+++...
T Consensus 259 ~~~l~~~~~ 267 (340)
T COG1088 259 CELLGKDKP 267 (340)
T ss_pred HHHhCcccc
Confidence 999987543
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=260.55 Aligned_cols=272 Identities=24% Similarity=0.305 Sum_probs=195.7
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH--HHHh-hhhcCCCccc-CCCCCCCCCCH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT--VAIS-LKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~--~~~~-~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
+|||||||||||++|+++|+++|+ ..+|+|++|+.+...+.+++...+.. +... ....++.++. |++++.+|++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~-~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~ 79 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRST-QAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD 79 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCC-CCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence 589999999999999999999874 34799999987654455566554332 1100 0002444555 99999999999
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCc--ccccccCCCCC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKN--IEEIIYKAHTH 252 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~--i~E~~~~~~~~ 252 (545)
+.+..+.+++|+|||+||.+++..+++.+.++|+.|+.+++++|.+. ++++|||+||.++++.... +.|.....+
T Consensus 80 ~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~-~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~-- 156 (367)
T TIGR01746 80 AEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASG-RAKPLHYVSTISVLAAIDLSTVTEDDAIVT-- 156 (367)
T ss_pred HHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhC-CCceEEEEccccccCCcCCCCccccccccc--
Confidence 99999999999999999998887788888999999999999999986 7788999999998875321 111110000
Q ss_pred HHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCCCCCCCCccCccchH
Q psy16252 253 YSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPT 331 (545)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~ 331 (545)
......++|+.||+.+|.++.++. .+++++++|||.|+|+...+. |... ....
T Consensus 157 -----------------------~~~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~i~Rpg~v~G~~~~g~--~~~~-~~~~ 210 (367)
T TIGR01746 157 -----------------------PPPGLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRILGNSYTGA--INSS-DILW 210 (367)
T ss_pred -----------------------cccccCCChHHHHHHHHHHHHHHHhcCCCEEEECCCceeecCCCCC--CCch-hHHH
Confidence 001223789999999999998876 699999999999999743321 1111 1112
Q ss_pred HHHHHHh-cCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhc
Q psy16252 332 GLVTGAQ-AGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 332 ~~~~~~~-~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~ 410 (545)
.++.... .|. ++.......+++||||+|++++.++..... ...+++||++++ +++++.|+++.+.+ .|
T Consensus 211 ~~~~~~~~~~~---~p~~~~~~~~~~~vddva~ai~~~~~~~~~-----~~~~~~~~v~~~--~~~s~~e~~~~i~~-~g 279 (367)
T TIGR01746 211 RMVKGCLALGA---YPDSPELTEDLTPVDYVARAIVALSSQPAA-----SAGGPVFHVVNP--EPVSLDEFLEWLER-AG 279 (367)
T ss_pred HHHHHHHHhCC---CCCCCccccCcccHHHHHHHHHHHHhCCCc-----ccCCceEEecCC--CCCCHHHHHHHHHH-cC
Confidence 2222222 222 222223467899999999999998765432 012689999998 89999999999998 55
Q ss_pred c
Q psy16252 411 K 411 (545)
Q Consensus 411 ~ 411 (545)
.
T Consensus 280 ~ 280 (367)
T TIGR01746 280 Y 280 (367)
T ss_pred C
Confidence 4
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=278.21 Aligned_cols=265 Identities=22% Similarity=0.293 Sum_probs=190.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.. ...+|++++|+.. ..++..... .......+++. |+.+++++++.+.
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~-~g~~V~~l~R~~~----~~~~~~~~~----~~~~~~v~~~~~Dl~~~~~~~~~~~ 71 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRR-REATVHVLVRRQS----LSRLEALAA----YWGADRVVPLVGDLTEPGLGLSEAD 71 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcC-CCCEEEEEECcch----HHHHHHHHH----hcCCCcEEEEecccCCccCCcCHHH
Confidence 579999999999999999999521 2247999999542 122222111 11112344444 9999888888888
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-cccccccCCCCCHHH
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-NIEEIIYKAHTHYSE 255 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-~i~E~~~~~~~~~~~ 255 (545)
+..+ +++|+||||||..++..+.....++|+.||.+++++|.+. ++++|||+||.++++... ...|+..+.
T Consensus 72 ~~~l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~~SS~~v~g~~~~~~~e~~~~~------ 143 (657)
T PRK07201 72 IAEL-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERL-QAATFHHVSSIAVAGDYEGVFREDDFDE------ 143 (657)
T ss_pred HHHh-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhc-CCCeEEEEeccccccCccCccccccchh------
Confidence 8887 8999999999988776667778899999999999999997 789999999999987532 222221110
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchH---H
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPT---G 332 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~---~ 332 (545)
.....+.|+.||+.+|+++.+. .+++++|+||+.|||+...+ ..+++.+.. .
T Consensus 144 ---------------------~~~~~~~Y~~sK~~~E~~~~~~-~g~~~~ilRp~~v~G~~~~g---~~~~~~~~~~~~~ 198 (657)
T PRK07201 144 ---------------------GQGLPTPYHRTKFEAEKLVREE-CGLPWRVYRPAVVVGDSRTG---EMDKIDGPYYFFK 198 (657)
T ss_pred ---------------------hcCCCCchHHHHHHHHHHHHHc-CCCcEEEEcCCeeeecCCCC---ccccCCcHHHHHH
Confidence 0122378999999999999864 58999999999999986432 222222221 2
Q ss_pred HHHHHhc-CceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhcc
Q psy16252 333 LVTGAQA-GVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVK 411 (545)
Q Consensus 333 ~~~~~~~-g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~ 411 (545)
++..... .......+.+....+++||||+|++++.++..... .+++||++++ +++++.|+++.+.+.+|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~-------~g~~~ni~~~--~~~s~~el~~~i~~~~g~ 269 (657)
T PRK07201 199 VLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHKDGR-------DGQTFHLTDP--KPQRVGDIYNAFARAAGA 269 (657)
T ss_pred HHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcCcCC-------CCCEEEeCCC--CCCcHHHHHHHHHHHhCC
Confidence 2222211 11112334556778999999999999998765433 4789999998 899999999999999887
Q ss_pred cC
Q psy16252 412 IP 413 (545)
Q Consensus 412 ~~ 413 (545)
.+
T Consensus 270 ~~ 271 (657)
T PRK07201 270 PP 271 (657)
T ss_pred Cc
Confidence 44
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=273.12 Aligned_cols=257 Identities=21% Similarity=0.185 Sum_probs=186.9
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
++++|+|||||||||||++|+++|++.|++ .+|+++.|...... ...+.. .......+++. |+.
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~-~~V~~~d~~~~~~~-~~~l~~-------~~~~~~v~~~~~Dl~------ 67 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPD-YKIVVLDKLDYCSN-LKNLNP-------SKSSPNFKFVKGDIA------ 67 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCC-CEEEEEeCCCccch-hhhhhh-------cccCCCeEEEECCCC------
Confidence 577899999999999999999999998643 36888887532111 111100 00011233444 777
Q ss_pred CHHHHHHHh--cCccEEEEccccccchH---HHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCc-----c
Q psy16252 173 SPDDKRLVT--SKVNLVFHCAATLRFDE---ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKN-----I 242 (545)
Q Consensus 173 ~~~~~~~l~--~~vd~Vih~Aa~~~~~~---~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~-----i 242 (545)
+.+.+..++ .++|+|||+||...... ....++++|+.||.+++++|++.+.+++|||+||..+|+.... .
T Consensus 68 d~~~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~ 147 (668)
T PLN02260 68 SADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGN 147 (668)
T ss_pred ChHHHHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCc
Confidence 444555544 58999999999876543 2356789999999999999999745899999999999986431 0
Q ss_pred cccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCC
Q psy16252 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPI 320 (545)
Q Consensus 243 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~ 320 (545)
.|.... ...+.|+.||..+|++++.+. .+++++|+||++|||+...+
T Consensus 148 ~E~~~~------------------------------~p~~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~- 196 (668)
T PLN02260 148 HEASQL------------------------------LPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFP- 196 (668)
T ss_pred cccCCC------------------------------CCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCc-
Confidence 111100 112689999999999998875 68999999999999986432
Q ss_pred CCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHH
Q psy16252 321 PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGE 400 (545)
Q Consensus 321 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~e 400 (545)
..+ ...++..+..|....+++++++.++++||+|+|+++..++..... +++||++++ +++++.|
T Consensus 197 ----~~~--i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~~~~--------~~vyni~~~--~~~s~~e 260 (668)
T PLN02260 197 ----EKL--IPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEV--------GHVYNIGTK--KERRVID 260 (668)
T ss_pred ----ccH--HHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhcCCC--------CCEEEECCC--CeeEHHH
Confidence 111 123444555565555678888999999999999999988765443 689999998 8899999
Q ss_pred HHHHHHHhhccc
Q psy16252 401 FITKSLKEGVKI 412 (545)
Q Consensus 401 l~~~l~~~~~~~ 412 (545)
+++.+.+.+|..
T Consensus 261 l~~~i~~~~g~~ 272 (668)
T PLN02260 261 VAKDICKLFGLD 272 (668)
T ss_pred HHHHHHHHhCCC
Confidence 999999998764
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=301.88 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=198.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhC-CCcCEEEEEecCCCCCCHHHHHHhhHHH--HHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSF-PRVKTIYVIVRAKKNQSPQQRIDKMLDT--VAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g-~~v~~V~~l~R~~~~~~~~~rl~~~~~~--~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
.++|||||||||+|++|+++|++.+ ....+|+|++|........+++...... ++......++.++. |++++.+|+
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 5899999999999999999999875 1245899999987655555566543332 11111112445555 999999999
Q ss_pred CHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcc--cccccCCC
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNI--EEIIYKAH 250 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i--~E~~~~~~ 250 (545)
+.+.+..+..++|+|||+||.+++..++..+...|+.||.+++++|.+. ++++|+|+||.++++..... .+......
T Consensus 1051 ~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~vSS~~v~~~~~~~~~~~~~~~~~ 1129 (1389)
T TIGR03443 1051 SDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEG-KAKQFSFVSSTSALDTEYYVNLSDELVQAG 1129 (1389)
T ss_pred CHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhC-CCceEEEEeCeeecCcccccchhhhhhhcc
Confidence 9999999999999999999999988888888889999999999999986 78999999999988642110 00000000
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCCCCCCCCccCccc
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWKEPIPGWIDNLYG 329 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~ 329 (545)
.. . ..++. .. ........++|+.||+.+|+++..+. .+++++|+|||.|+|+...+. |..
T Consensus 1130 ~~---------~-~~e~~--~~-~~~~~~~~~~Y~~sK~~aE~l~~~~~~~g~~~~i~Rpg~v~G~~~~g~--~~~---- 1190 (1389)
T TIGR03443 1130 GA---------G-IPESD--DL-MGSSKGLGTGYGQSKWVAEYIIREAGKRGLRGCIVRPGYVTGDSKTGA--TNT---- 1190 (1389)
T ss_pred CC---------C-CCccc--cc-ccccccCCCChHHHHHHHHHHHHHHHhCCCCEEEECCCccccCCCcCC--CCc----
Confidence 00 0 00000 00 00011234789999999999999876 789999999999999865532 211
Q ss_pred hHHHHHHHhcCcee-EEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 330 PTGLVTGAQAGVVR-TFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 330 ~~~~~~~~~~g~~~-~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
..++.....+... ...++....++++||||||++++.++..... .....+||++++ .+++|.++++.+.+.
T Consensus 1191 -~~~~~~~~~~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~-----~~~~~i~~~~~~--~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443 1191 -DDFLLRMLKGCIQLGLIPNINNTVNMVPVDHVARVVVAAALNPPK-----ESELAVAHVTGH--PRIRFNDFLGTLKTY 1262 (1389)
T ss_pred -hhHHHHHHHHHHHhCCcCCCCCccccccHHHHHHHHHHHHhCCcc-----cCCCCEEEeCCC--CCCcHHHHHHHHHHh
Confidence 1222222221110 0122445678999999999999998765431 013469999988 789999999999765
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=256.85 Aligned_cols=247 Identities=19% Similarity=0.130 Sum_probs=179.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|||||||||||++|+++|++.|+ +|+++.|...... ..+... + .....+++. |+.+.
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~---~V~~ldr~~~~~~--~~~~~~----~---~~~~~~~~~~Di~~~------- 180 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD---EVIVIDNFFTGRK--ENLVHL----F---GNPRFELIRHDVVEP------- 180 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCCCccH--hHhhhh----c---cCCceEEEECccccc-------
Confidence 58999999999999999999999876 6888887643211 111110 0 001122222 54422
Q ss_pred HHHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC--
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK-- 248 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~-- 248 (545)
.+.++|+|||+||.... ..+....+++|+.||.+++++|++. ++ +|||+||.++|+... +++|+.+.
T Consensus 181 ----~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~ 254 (436)
T PLN02166 181 ----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPLEHPQKETYWGNV 254 (436)
T ss_pred ----cccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECcHHHhCCCCCCCCCccccccC
Confidence 23579999999996542 2345678899999999999999987 54 899999999998642 34443211
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
.|. ...+.|+.||..+|++++.+. .+++++++||++|||++.....+
T Consensus 255 ~p~---------------------------~p~s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~---- 303 (436)
T PLN02166 255 NPI---------------------------GERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDG---- 303 (436)
T ss_pred CCC---------------------------CCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCcc----
Confidence 111 112679999999999999876 68999999999999986432110
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
.....++..+..+....++++++..++|+||+|+|++++.++.... .++||++++ +++|+.|+++.+.
T Consensus 304 -~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~~~---------~giyNIgs~--~~~Si~ela~~I~ 371 (436)
T PLN02166 304 -RVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGEH---------VGPFNLGNP--GEFTMLELAEVVK 371 (436)
T ss_pred -chHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhcCC---------CceEEeCCC--CcEeHHHHHHHHH
Confidence 1123455666666666677888899999999999999999886432 469999998 8899999999999
Q ss_pred Hhhcc
Q psy16252 407 KEGVK 411 (545)
Q Consensus 407 ~~~~~ 411 (545)
+..+.
T Consensus 372 ~~~g~ 376 (436)
T PLN02166 372 ETIDS 376 (436)
T ss_pred HHhCC
Confidence 99875
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=253.11 Aligned_cols=284 Identities=15% Similarity=0.088 Sum_probs=185.1
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
+.|+|||||||||||++|+++|+++|. .+|+++.|..... ..+... ..... ....+++. |+. +.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g--~~V~~l~r~~~~~---~~l~~~---~~~~~-~~~~~~~~~Dl~------d~ 77 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETP--HKVLALDVYNDKI---KHLLEP---DTVPW-SGRIQFHRINIK------HD 77 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCC--CEEEEEecCchhh---hhhhcc---ccccC-CCCeEEEEcCCC------Ch
Confidence 357899999999999999999999831 2688888764321 111000 00000 01233444 776 66
Q ss_pred HHHHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKA 249 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~ 249 (545)
+.+.++++++|+|||+||.... .......+..|+.++.+++++|++. + ++|||+||.++|+... .++|+....
T Consensus 78 ~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~-~r~v~~SS~~vYg~~~~~~~~e~~p~~ 155 (386)
T PLN02427 78 SRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N-KRLIHFSTCEVYGKTIGSFLPKDHPLR 155 (386)
T ss_pred HHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C-CEEEEEeeeeeeCCCcCCCCCcccccc
Confidence 7788888999999999997542 2223445678999999999999986 5 8999999999998632 233322111
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCc---
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWI--- 324 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~--- 324 (545)
+. +... . .+++. ............+.|+.||+.+|+++..+. .+++++|+||++|||++....++..
T Consensus 156 ~~-~~~~-~-----~~e~~-~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~ 227 (386)
T PLN02427 156 QD-PAFY-V-----LKEDE-SPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPS 227 (386)
T ss_pred cc-cccc-c-----ccccc-cccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccc
Confidence 00 0000 0 00000 000000000112679999999999998765 6899999999999999754332210
Q ss_pred cCccc-hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHH
Q psy16252 325 DNLYG-PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFIT 403 (545)
Q Consensus 325 ~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~ 403 (545)
..... ...++..+..+....+.+++++.++||||+|+|++++.++.+... ..+++||++++. +++++.|+++
T Consensus 228 ~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~------~~g~~yni~~~~-~~~s~~el~~ 300 (386)
T PLN02427 228 EGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPAR------ANGHIFNVGNPN-NEVTVRQLAE 300 (386)
T ss_pred cccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCccc------ccCceEEeCCCC-CCccHHHHHH
Confidence 01111 112334455565555667788889999999999999998876431 136799999861 3899999999
Q ss_pred HHHHhhcc
Q psy16252 404 KSLKEGVK 411 (545)
Q Consensus 404 ~l~~~~~~ 411 (545)
.+.+.++.
T Consensus 301 ~i~~~~g~ 308 (386)
T PLN02427 301 MMTEVYAK 308 (386)
T ss_pred HHHHHhcc
Confidence 99998875
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=247.96 Aligned_cols=255 Identities=19% Similarity=0.166 Sum_probs=180.8
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+|||||||||||++|++.|++.|+ +|.++.|.........++ ..+++. |+. +.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~---~V~~v~r~~~~~~~~~~~--------------~~~~~~~Dl~------d~ 76 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH---YIIASDWKKNEHMSEDMF--------------CHEFHLVDLR------VM 76 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC---EEEEEEeccccccccccc--------------cceEEECCCC------CH
Confidence 579999999999999999999999876 688888864321100000 012222 676 55
Q ss_pred HHHHHHhcCccEEEEcccccc---c-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR---F-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAH 250 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~---~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~ 250 (545)
+.+..+++++|+|||+||.+. + ..........|+.++.+++++|++. ++++|||+||.++|+......+.. +
T Consensus 77 ~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk~~V~~SS~~vYg~~~~~~~~~---~ 152 (370)
T PLN02695 77 ENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVKRFFYASSACIYPEFKQLETNV---S 152 (370)
T ss_pred HHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCCEEEEeCchhhcCCccccCcCC---C
Confidence 677777889999999998753 1 1223455688999999999999986 789999999999998643211100 0
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC-c
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN-L 327 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~-~ 327 (545)
..++... .....+.|+.+|..+|+++..+. .+++++++||+.|||+... |..+ .
T Consensus 153 -------------~~E~~~~------p~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~----~~~~~~ 209 (370)
T PLN02695 153 -------------LKESDAW------PAEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGT----WKGGRE 209 (370)
T ss_pred -------------cCcccCC------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCC----cccccc
Confidence 0000000 00112689999999999998865 6999999999999998543 2111 1
Q ss_pred cchHHHHHHHhc-CceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 328 YGPTGLVTGAQA-GVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 328 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
..+..++..+.. +....+++++++.++|+||+|++++++.++... . +++||++++ +++|++|+++.+.
T Consensus 210 ~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~~-~--------~~~~nv~~~--~~~s~~el~~~i~ 278 (370)
T PLN02695 210 KAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKSD-F--------REPVNIGSD--EMVSMNEMAEIAL 278 (370)
T ss_pred ccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhcc-C--------CCceEecCC--CceeHHHHHHHHH
Confidence 123345544443 233446788899999999999999999876543 2 478999998 8999999999998
Q ss_pred Hhhcc
Q psy16252 407 KEGVK 411 (545)
Q Consensus 407 ~~~~~ 411 (545)
+..+.
T Consensus 279 ~~~g~ 283 (370)
T PLN02695 279 SFENK 283 (370)
T ss_pred HHhCC
Confidence 88765
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=253.55 Aligned_cols=249 Identities=18% Similarity=0.119 Sum_probs=178.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
.++|+|||||||||||++|++.|+++|+ +|+++.|..... .+.+.. .+...+.+++. |+.+
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~---~V~~ld~~~~~~--~~~~~~-------~~~~~~~~~i~~D~~~------ 178 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGD---SVIVVDNFFTGR--KENVMH-------HFSNPNFELIRHDVVE------ 178 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcC---EEEEEeCCCccc--hhhhhh-------hccCCceEEEECCccC------
Confidence 3569999999999999999999999976 577787753221 111110 01111222232 5432
Q ss_pred HHHHHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
.++.++|+|||+||.... ..+....+++|+.||.+++++|++. ++ +|||+||..+|+... +..|+.+.
T Consensus 179 -----~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g~-r~V~~SS~~VYg~~~~~p~~E~~~~ 251 (442)
T PLN02206 179 -----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPLQHPQVETYWG 251 (442)
T ss_pred -----hhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECChHHhCCCCCCCCCccccc
Confidence 233579999999996532 2345678899999999999999997 54 899999999997642 23343211
Q ss_pred --CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCc
Q psy16252 249 --AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 249 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
.|. ...+.|+.||..+|+++..+. .+++++++||++|||+......+
T Consensus 252 ~~~P~---------------------------~~~s~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~-- 302 (442)
T PLN02206 252 NVNPI---------------------------GVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDG-- 302 (442)
T ss_pred cCCCC---------------------------CccchHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcccc--
Confidence 111 112689999999999998765 68999999999999985432111
Q ss_pred cCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHH
Q psy16252 325 DNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITK 404 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~ 404 (545)
.....++..+..+....+++++++.++++||+|+|++++.++.... +++||++++ +++|+.|+++.
T Consensus 303 ---~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~~~---------~g~yNIgs~--~~~sl~Elae~ 368 (442)
T PLN02206 303 ---RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---------VGPFNLGNP--GEFTMLELAKV 368 (442)
T ss_pred ---chHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhcCC---------CceEEEcCC--CceeHHHHHHH
Confidence 1123455555555555567888889999999999999998876432 469999998 89999999999
Q ss_pred HHHhhcc
Q psy16252 405 SLKEGVK 411 (545)
Q Consensus 405 l~~~~~~ 411 (545)
+.+.++.
T Consensus 369 i~~~~g~ 375 (442)
T PLN02206 369 VQETIDP 375 (442)
T ss_pred HHHHhCC
Confidence 9998764
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=249.55 Aligned_cols=264 Identities=15% Similarity=0.120 Sum_probs=184.3
Q ss_pred cEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|+|||||||||||++|+++|++. |+ .|+++.|+... +... ......+++. |+.. +.+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~---~V~~~~r~~~~------~~~~-------~~~~~~~~~~~Dl~~-----~~~ 60 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW---EVYGMDMQTDR------LGDL-------VNHPRMHFFEGDITI-----NKE 60 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC---eEEEEeCcHHH------HHHh-------ccCCCeEEEeCCCCC-----CHH
Confidence 68999999999999999999986 33 68888885321 1110 0111233333 6652 445
Q ss_pred HHHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
.+.++++++|+|||+||.... ..+....+++|+.|+.+++++|++. + ++|||+||..+++... ++.|+..+..
T Consensus 61 ~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~-~~~v~~SS~~vyg~~~~~~~~ee~~~~~ 138 (347)
T PRK11908 61 WIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSEVYGMCPDEEFDPEASPLV 138 (347)
T ss_pred HHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C-CeEEEEecceeeccCCCcCcCccccccc
Confidence 677788899999999997532 2345667899999999999999986 5 7999999999987532 2333211100
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCcc
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLY 328 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~ 328 (545)
.. + .....+.|+.||..+|++++.+. .+++++++||+.|||+...+...-.....
T Consensus 139 ~~---------------------~--~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~ 195 (347)
T PRK11908 139 YG---------------------P--INKPRWIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSS 195 (347)
T ss_pred cC---------------------c--CCCccchHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCc
Confidence 00 0 00112679999999999999875 78999999999999987543211000001
Q ss_pred -chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHH
Q psy16252 329 -GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLK 407 (545)
Q Consensus 329 -~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~ 407 (545)
....++..+..|....+.+++++.++||||+|+|++++.++.+... ...+++||++++. +.+|+.|+++.+.+
T Consensus 196 ~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~-----~~~g~~yni~~~~-~~~s~~e~~~~i~~ 269 (347)
T PRK11908 196 RVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKDG-----VASGKIYNIGNPK-NNHSVRELANKMLE 269 (347)
T ss_pred chHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCccc-----cCCCCeEEeCCCC-CCcCHHHHHHHHHH
Confidence 1234555555666555667788899999999999999998876421 0136899999851 37999999999999
Q ss_pred hhcccC
Q psy16252 408 EGVKIP 413 (545)
Q Consensus 408 ~~~~~~ 413 (545)
.++..|
T Consensus 270 ~~~~~~ 275 (347)
T PRK11908 270 LAAEYP 275 (347)
T ss_pred HhcCcc
Confidence 887543
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=251.25 Aligned_cols=252 Identities=19% Similarity=0.156 Sum_probs=182.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
++|||||||||||++|+++|+++|++ .|+++.|..+... ...+... .......++. |+. +.+.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~--~v~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~Dl~------d~~~ 65 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSD--AVVVVDKLTYAGN-LMSLAPV-------AQSERFAFEKVDIC------DRAE 65 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCC--EEEEEecCccccc-hhhhhhc-------ccCCceEEEECCCc------ChHH
Confidence 68999999999999999999998763 2444444322111 1111100 0001222333 777 5567
Q ss_pred HHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHc--------cCCceEEEEeccccccCCC---
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQC--------KNLKMFTYVSTAFSNSYRK--- 240 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~--------~~~~~~v~vSS~~v~~~~~--- 240 (545)
+..+++ ++|+|||+||..... +.++..+++|+.||.+++++|.+. +++++|||+||.++|+...
T Consensus 66 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~ 145 (355)
T PRK10217 66 LARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTD 145 (355)
T ss_pred HHHHHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCC
Confidence 887777 489999999986543 235778899999999999999863 3568999999999887531
Q ss_pred -cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCC
Q psy16252 241 -NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 241 -~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~ 317 (545)
+++|+....| .+.|+.||..+|.++..++ .+++++++||++|||+..
T Consensus 146 ~~~~E~~~~~p------------------------------~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~ 195 (355)
T PRK10217 146 DFFTETTPYAP------------------------------SSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH 195 (355)
T ss_pred CCcCCCCCCCC------------------------------CChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence 3444322111 2689999999999998875 789999999999999865
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCccc
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLT 397 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t 397 (545)
.+. . ....++..+..|....+++++++.++|+||+|+|++++.++..... +++||++++ +++|
T Consensus 196 ~~~-----~--~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~--------~~~yni~~~--~~~s 258 (355)
T PRK10217 196 FPE-----K--LIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCVATTGKV--------GETYNIGGH--NERK 258 (355)
T ss_pred Ccc-----c--HHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHHHHHHHHHhcCCC--------CCeEEeCCC--Cccc
Confidence 321 1 1123445555565445678899999999999999999998876433 689999999 8999
Q ss_pred HHHHHHHHHHhhccc
Q psy16252 398 WGEFITKSLKEGVKI 412 (545)
Q Consensus 398 ~~el~~~l~~~~~~~ 412 (545)
+.|+++.+.+.+++.
T Consensus 259 ~~~~~~~i~~~~~~~ 273 (355)
T PRK10217 259 NLDVVETICELLEEL 273 (355)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999988763
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=244.74 Aligned_cols=253 Identities=16% Similarity=0.146 Sum_probs=177.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+|||||||||||++|+++|+++|+ +|.+++|+...... ..+.. +.. . ....+++. |+. +.
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~r~~~~~~~-~~~~~----~~~-~-~~~~~~~~~Dl~------d~ 72 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY---TVKGTVRNPDDPKN-THLRE----LEG-G-KERLILCKADLQ------DY 72 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCchhhhH-HHHHH----hhC-C-CCcEEEEecCcC------Ch
Confidence 468999999999999999999999876 68888887532111 00110 000 0 01223334 776 56
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecc-ccccCCC-----cccccccC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA-FSNSYRK-----NIEEIIYK 248 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~-~v~~~~~-----~i~E~~~~ 248 (545)
+.+.++++++|+|||+||... ......+++|+.||.+++++|++. ++++|||+||. .+++... .++|+...
T Consensus 73 ~~~~~~~~~~d~Vih~A~~~~--~~~~~~~~~nv~gt~~ll~aa~~~-~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~ 149 (342)
T PLN02214 73 EALKAAIDGCDGVFHTASPVT--DDPEQMVEPAVNGAKFVINAAAEA-KVKRVVITSSIGAVYMDPNRDPEAVVDESCWS 149 (342)
T ss_pred HHHHHHHhcCCEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeccceeeeccCCCCCCcccCcccCC
Confidence 778888899999999999763 345677899999999999999987 78999999996 4665321 13343210
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
. . . ......+.|+.||..+|++++.+. .+++++++||++|||+...+. .
T Consensus 150 ~-~---------------------~--~~~~p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~--~--- 200 (342)
T PLN02214 150 D-L---------------------D--FCKNTKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPT--I--- 200 (342)
T ss_pred C-h---------------------h--hccccccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCC--C---
Confidence 0 0 0 000112689999999999998875 689999999999999865431 1
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
......+.....|.... .++...+||||+|||++++.++.+... ++.||+++. ++++.|+++.+.
T Consensus 201 -~~~~~~~~~~~~g~~~~---~~~~~~~~i~V~Dva~a~~~al~~~~~--------~g~yn~~~~---~~~~~el~~~i~ 265 (342)
T PLN02214 201 -NASLYHVLKYLTGSAKT---YANLTQAYVDVRDVALAHVLVYEAPSA--------SGRYLLAES---ARHRGEVVEILA 265 (342)
T ss_pred -CchHHHHHHHHcCCccc---CCCCCcCeeEHHHHHHHHHHHHhCccc--------CCcEEEecC---CCCHHHHHHHHH
Confidence 11112222333444332 235578999999999999999876544 568999864 689999999999
Q ss_pred Hhhcc
Q psy16252 407 KEGVK 411 (545)
Q Consensus 407 ~~~~~ 411 (545)
+.++.
T Consensus 266 ~~~~~ 270 (342)
T PLN02214 266 KLFPE 270 (342)
T ss_pred HHCCC
Confidence 98753
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=252.12 Aligned_cols=283 Identities=11% Similarity=0.026 Sum_probs=186.1
Q ss_pred chhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC-C-------------HHHHHHhhHHHHHHhhh
Q psy16252 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ-S-------------PQQRIDKMLDTVAISLK 155 (545)
Q Consensus 90 ~~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~-~-------------~~~rl~~~~~~~~~~~~ 155 (545)
....-.++|+|||||||||||++|+++|++.|+ .|+++.|..... . ..+++.. +....
T Consensus 40 ~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~ 111 (442)
T PLN02572 40 GSSSSSKKKKVMVIGGDGYCGWATALHLSKRGY---EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRR-----WKEVS 111 (442)
T ss_pred CCCccccCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEeccccccccccccccccccccchHHHHHH-----HHHhh
Confidence 444556789999999999999999999999876 566665422110 0 0111111 00011
Q ss_pred hcCCCccc-CCCCCCCCCCHHHHHHHhc--CccEEEEccccccch------HHHHHHHHHhHHHHHHHHHHHHHccCCc-
Q psy16252 156 FTCSTSKE-SAQAPDLGLSPDDKRLVTS--KVNLVFHCAATLRFD------EELKEAIRTNMCATQTMLDLAKQCKNLK- 225 (545)
Q Consensus 156 ~~~~~~~~-Dl~~~~lgl~~~~~~~l~~--~vd~Vih~Aa~~~~~------~~~~~~~~~Nv~gt~~ll~~a~~~~~~~- 225 (545)
....+++. |++ +.+.+..+++ ++|+|||+|+..... ......+++|+.||.+++++|++. +++
T Consensus 112 ~~~v~~v~~Dl~------d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~-gv~~ 184 (442)
T PLN02572 112 GKEIELYVGDIC------DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF-APDC 184 (442)
T ss_pred CCcceEEECCCC------CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh-CCCc
Confidence 12344555 887 6677888777 589999999874322 122455789999999999999987 665
Q ss_pred eEEEEeccccccCCC-cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCC
Q psy16252 226 MFTYVSTAFSNSYRK-NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFF 302 (545)
Q Consensus 226 ~~v~vSS~~v~~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l 302 (545)
+|||+||..+||... +++|...+. ++ ...+.++.......+.|+.||..+|.++..++ .++
T Consensus 185 ~~V~~SS~~vYG~~~~~~~E~~i~~---------------~~-~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl 248 (442)
T PLN02572 185 HLVKLGTMGEYGTPNIDIEEGYITI---------------TH-NGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGI 248 (442)
T ss_pred cEEEEecceecCCCCCCCccccccc---------------cc-ccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCC
Confidence 899999999998532 333321100 00 00000000000112689999999999998876 699
Q ss_pred CEEEEccceeeccCCCCC---CCCc-----cCc--cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 303 PVCIFRPSIVISTWKEPI---PGWI-----DNL--YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 303 ~~~i~Rp~~i~g~~~~~~---~g~~-----~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
+++++||++|||++..+. +... ++. .....++..+..|....+++++++.+||+||+|+|++++.++...
T Consensus 249 ~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~ 328 (442)
T PLN02572 249 RATDLNQGVVYGVRTDETMMDEELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANP 328 (442)
T ss_pred CEEEEecccccCCCCcccccccccccccCcccchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhCh
Confidence 999999999999975431 0000 000 112234455556665556788899999999999999999998754
Q ss_pred ccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh---hcc
Q psy16252 373 HERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE---GVK 411 (545)
Q Consensus 373 ~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~---~~~ 411 (545)
.. .....+||+++ ..+++.|+++.+.+. .|.
T Consensus 329 ~~-----~g~~~i~Nigs---~~~si~el~~~i~~~~~~~g~ 362 (442)
T PLN02572 329 AK-----PGEFRVFNQFT---EQFSVNELAKLVTKAGEKLGL 362 (442)
T ss_pred hh-----cCceeEEEeCC---CceeHHHHHHHHHHHHHhhCC
Confidence 22 00125899975 469999999999998 654
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=238.68 Aligned_cols=252 Identities=21% Similarity=0.165 Sum_probs=182.6
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDK 177 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~ 177 (545)
+|||||||||||++|+++|++.|++ .+|+++.|...... .+++.... .....+++. |++ +++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~-~~v~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~Dl~------~~~~~ 65 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD-AEVIVLDKLTYAGN-LENLADLE-------DNPRYRFVKGDIG------DRELV 65 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC-CEEEEecCCCcchh-hhhhhhhc-------cCCCcEEEEcCCc------CHHHH
Confidence 4899999999999999999998632 36788776432111 11111100 011233344 777 66788
Q ss_pred HHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---cccccccCC
Q psy16252 178 RLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---NIEEIIYKA 249 (545)
Q Consensus 178 ~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---~i~E~~~~~ 249 (545)
.+++++ +|+|||+||..... +..+.++++|+.++.+++++|.+...-.++||+||.++++... ++.|.....
T Consensus 66 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~ 145 (317)
T TIGR01181 66 SRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLA 145 (317)
T ss_pred HHHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCC
Confidence 888886 89999999976532 3456778999999999999998852223899999999887643 233322111
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCc
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNL 327 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~ 327 (545)
| .+.|+.+|+.+|.+++.+. .+++++++||+.|||+...+ ..+
T Consensus 146 ~------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~-----~~~ 190 (317)
T TIGR01181 146 P------------------------------SSPYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFP-----EKL 190 (317)
T ss_pred C------------------------------CCchHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCc-----ccH
Confidence 1 1679999999999998765 68999999999999985432 111
Q ss_pred cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHH
Q psy16252 328 YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLK 407 (545)
Q Consensus 328 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~ 407 (545)
...++.....+....++++++..++++|++|+|+++..++..... +++||++++ .++++.|+++.+.+
T Consensus 191 --~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~~~--------~~~~~~~~~--~~~s~~~~~~~i~~ 258 (317)
T TIGR01181 191 --IPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKGRV--------GETYNIGGG--NERTNLEVVETILE 258 (317)
T ss_pred --HHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCCCC--------CceEEeCCC--CceeHHHHHHHHHH
Confidence 234455555565444567888899999999999999998865443 689999998 78999999999999
Q ss_pred hhccc
Q psy16252 408 EGVKI 412 (545)
Q Consensus 408 ~~~~~ 412 (545)
.++..
T Consensus 259 ~~~~~ 263 (317)
T TIGR01181 259 LLGKD 263 (317)
T ss_pred HhCCC
Confidence 98753
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=241.33 Aligned_cols=243 Identities=19% Similarity=0.181 Sum_probs=167.9
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH-HH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD-KR 178 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~-~~ 178 (545)
|||||||||||++|+++|++.|+ +++++.|..........+.. + |+.+.. +.++ ++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~---~~v~~~~~~~~~~~~~~~~~--------~---------~~~d~~---~~~~~~~ 58 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI---TDILVVDNLKDGTKFVNLVD--------L---------DIADYM---DKEDFLA 58 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC---ceEEEecCCCcchHHHhhhh--------h---------hhhhhh---hHHHHHH
Confidence 79999999999999999999875 35556665432111001000 0 332110 2222 33
Q ss_pred HHh-----cCccEEEEccccccch-HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 179 LVT-----SKVNLVFHCAATLRFD-EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 179 ~l~-----~~vd~Vih~Aa~~~~~-~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
.++ .++|+|||+||..... ......++.|+.+|.+++++|++. ++ +|||+||+++++... .++|..+..|
T Consensus 59 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~-~~-~~i~~SS~~vyg~~~~~~~~E~~~~~p 136 (308)
T PRK11150 59 QIMAGDDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTDDFIEEREYEKP 136 (308)
T ss_pred HHhcccccCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEcchHHhCcCCCCCCccCCCCCC
Confidence 333 2689999999864321 123457899999999999999997 66 699999999998642 2334322222
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCcc
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLY 328 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~ 328 (545)
.+.|+.||+.+|++++++. .+++++++||+.|||++..+. +.....
T Consensus 137 ------------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~-~~~~~~- 184 (308)
T PRK11150 137 ------------------------------LNVYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHK-GSMASV- 184 (308)
T ss_pred ------------------------------CCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCC-Cccchh-
Confidence 2679999999999999876 689999999999999865431 111111
Q ss_pred chHHHHHHHhcCceeEE-ecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHH
Q psy16252 329 GPTGLVTGAQAGVVRTF-LVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLK 407 (545)
Q Consensus 329 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~ 407 (545)
...+...+..|....+ .++++..++++||+|+|++++.++.... +++||++++ .++|+.|+++.+.+
T Consensus 185 -~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~~---------~~~yni~~~--~~~s~~el~~~i~~ 252 (308)
T PRK11150 185 -AFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWENGV---------SGIFNCGTG--RAESFQAVADAVLA 252 (308)
T ss_pred -HHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhcCC---------CCeEEcCCC--CceeHHHHHHHHHH
Confidence 1122344555654333 3556778999999999999998876432 469999998 78999999999999
Q ss_pred hhcc
Q psy16252 408 EGVK 411 (545)
Q Consensus 408 ~~~~ 411 (545)
..+.
T Consensus 253 ~~~~ 256 (308)
T PRK11150 253 YHKK 256 (308)
T ss_pred HhCC
Confidence 8774
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-28 Score=263.73 Aligned_cols=273 Identities=15% Similarity=0.096 Sum_probs=192.7
Q ss_pred CCchhhhhcCcEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CC
Q psy16252 88 PPSLDDFYEGAEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SA 165 (545)
Q Consensus 88 ~~~~~~~~~~~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl 165 (545)
..+..++.++|+|||||||||||++|+++|++. |+ +|++++|...... ++ ....+.+++. |+
T Consensus 306 ~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~---~V~~l~r~~~~~~---~~----------~~~~~~~~~~gDl 369 (660)
T PRK08125 306 SKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY---EVYGLDIGSDAIS---RF----------LGHPRFHFVEGDI 369 (660)
T ss_pred ccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc---EEEEEeCCchhhh---hh----------cCCCceEEEeccc
Confidence 445667888999999999999999999999986 44 7889988653211 00 0011233344 77
Q ss_pred CCCCCCCCHHHHHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--
Q psy16252 166 QAPDLGLSPDDKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-- 240 (545)
Q Consensus 166 ~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-- 240 (545)
++. ...+..+++++|+|||+||.... .......+++|+.+|.+++++|++. + ++|||+||.++|+...
T Consensus 370 ~d~-----~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~-~~~V~~SS~~vyg~~~~~ 442 (660)
T PRK08125 370 SIH-----SEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N-KRIIFPSTSEVYGMCTDK 442 (660)
T ss_pred cCc-----HHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C-CeEEEEcchhhcCCCCCC
Confidence 632 22356677899999999997643 2334567899999999999999997 5 7999999999998532
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCC
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKE 318 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~ 318 (545)
+++|+....+.. + .....+.|+.||+.+|+++..+. .+++++++||++|||+...
T Consensus 443 ~~~E~~~~~~~~---------------------p--~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~ 499 (660)
T PRK08125 443 YFDEDTSNLIVG---------------------P--INKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499 (660)
T ss_pred CcCccccccccC---------------------C--CCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCcc
Confidence 344543211000 0 00111579999999999998876 6899999999999998653
Q ss_pred CCCCCccC-ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCC-cc
Q psy16252 319 PIPGWIDN-LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDN-PL 396 (545)
Q Consensus 319 ~~~g~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~-~~ 396 (545)
........ ......++..+..|....+++++++.++++||+|+|++++.++.+... ...+++||++++ + ++
T Consensus 500 ~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~~-----~~~g~iyni~~~--~~~~ 572 (660)
T PRK08125 500 NLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKDN-----RCDGQIINIGNP--DNEA 572 (660)
T ss_pred ccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhcccc-----ccCCeEEEcCCC--CCce
Confidence 21110000 011234455555565555678889999999999999999999876421 013689999987 4 69
Q ss_pred cHHHHHHHHHHhhcccC
Q psy16252 397 TWGEFITKSLKEGVKIP 413 (545)
Q Consensus 397 t~~el~~~l~~~~~~~~ 413 (545)
|++|+++.+.+..+..+
T Consensus 573 s~~el~~~i~~~~g~~~ 589 (660)
T PRK08125 573 SIRELAEMLLASFEKHP 589 (660)
T ss_pred eHHHHHHHHHHHhccCc
Confidence 99999999999987643
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=240.52 Aligned_cols=260 Identities=16% Similarity=0.133 Sum_probs=179.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.|+. .|+++.|...... .+.+... . ......++. |++ +.++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~--~v~~~~~~~~~~~-~~~~~~~----~---~~~~~~~~~~Dl~------d~~~ 64 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD--SVVNVDKLTYAGN-LESLADV----S---DSERYVFEHADIC------DRAE 64 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC--eEEEecCCCccch-HHHHHhc----c---cCCceEEEEecCC------CHHH
Confidence 47999999999999999999998753 3555444321111 1111110 0 001122333 887 5677
Q ss_pred HHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHc--------cCCceEEEEeccccccCCCc--
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQC--------KNLKMFTYVSTAFSNSYRKN-- 241 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~--------~~~~~~v~vSS~~v~~~~~~-- 241 (545)
+..+++ ++|+|||+||..... ...+.++++|+.|+.+++++|++. +++++|||+||.++++....
T Consensus 65 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~ 144 (352)
T PRK10084 65 LDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPD 144 (352)
T ss_pred HHHHHHhcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccc
Confidence 777776 489999999976432 235778999999999999999863 24679999999998875321
Q ss_pred -ccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCC
Q psy16252 242 -IEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKE 318 (545)
Q Consensus 242 -i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~ 318 (545)
+.+....++ ++++ ++ ....+.|+.||+.+|+++..++ .+++++++||+.|||+...
T Consensus 145 ~~~~~~~~~~-------------~~E~-----~~---~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~ 203 (352)
T PRK10084 145 EVENSEELPL-------------FTET-----TA---YAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHF 203 (352)
T ss_pred cccccccCCC-------------cccc-----CC---CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcC
Confidence 000000000 0000 00 0122789999999999998875 6899999999999998643
Q ss_pred CCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccH
Q psy16252 319 PIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTW 398 (545)
Q Consensus 319 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~ 398 (545)
+. .+ ...++..+..+....+++++++..+++||+|+|++++.++..... +++||++++ +++++
T Consensus 204 ~~-----~~--~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~~~~--------~~~yni~~~--~~~s~ 266 (352)
T PRK10084 204 PE-----KL--IPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALYKVVTEGKA--------GETYNIGGH--NEKKN 266 (352)
T ss_pred cc-----ch--HHHHHHHHhcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHhcCCC--------CceEEeCCC--CcCcH
Confidence 21 11 223444455555445668889999999999999999988765433 689999998 88999
Q ss_pred HHHHHHHHHhhcc
Q psy16252 399 GEFITKSLKEGVK 411 (545)
Q Consensus 399 ~el~~~l~~~~~~ 411 (545)
.++++.+.+..+.
T Consensus 267 ~~~~~~i~~~~~~ 279 (352)
T PRK10084 267 LDVVLTICDLLDE 279 (352)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998875
|
|
| >KOG1430|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=233.28 Aligned_cols=260 Identities=20% Similarity=0.231 Sum_probs=194.1
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++.+++||||+||||.+|+++|++.+. ..+|.++...+....-..... ......+++.. |+. +.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~-~~~irv~D~~~~~~~~~~e~~--------~~~~~~v~~~~~D~~------~~ 67 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENEL-KLEIRVVDKTPTQSNLPAELT--------GFRSGRVTVILGDLL------DA 67 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhccc-ccEEEEeccCccccccchhhh--------cccCCceeEEecchh------hh
Confidence 368999999999999999999999863 457777766543111111000 00122333443 666 56
Q ss_pred HHHHHHhcCccEEEEcccccc--chH-HHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcc---cccccC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR--FDE-ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNI---EEIIYK 248 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~--~~~-~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i---~E~~~~ 248 (545)
..+...++++ .|+||||... +.. ..+...++||.||.+++++|.+. ++++|||+||++|.....++ +|+ .|
T Consensus 68 ~~i~~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~-~v~~lIYtSs~~Vvf~g~~~~n~~E~-~p 144 (361)
T KOG1430|consen 68 NSISNAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL-GVKRLIYTSSAYVVFGGEPIINGDES-LP 144 (361)
T ss_pred hhhhhhccCc-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh-CCCEEEEecCceEEeCCeecccCCCC-CC
Confidence 6788888999 8888888643 333 36888999999999999999998 99999999999998775431 221 11
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
.| ..+.+.|+.||..||+++.++. .++..+++||+.|||++..-
T Consensus 145 ~p---------------------------~~~~d~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~------- 190 (361)
T KOG1430|consen 145 YP---------------------------LKHIDPYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKR------- 190 (361)
T ss_pred Cc---------------------------cccccccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCcc-------
Confidence 11 2455789999999999999998 67999999999999986542
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
-...++..+..|......++.+...++++++.||.|++.|...... ..+...|++|+|+++ +|+...+++..+.
T Consensus 191 --~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~~--~~~~~~Gq~yfI~d~--~p~~~~~~~~~l~ 264 (361)
T KOG1430|consen 191 --LLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALLD--KSPSVNGQFYFITDD--TPVRFFDFLSPLV 264 (361)
T ss_pred --ccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHHh--cCCccCceEEEEeCC--CcchhhHHHHHHH
Confidence 1245666667777777778889999999999999999988766542 133457899999999 8888888888888
Q ss_pred HhhcccC
Q psy16252 407 KEGVKIP 413 (545)
Q Consensus 407 ~~~~~~~ 413 (545)
+.+|..+
T Consensus 265 ~~lg~~~ 271 (361)
T KOG1430|consen 265 KALGYCL 271 (361)
T ss_pred HhcCCCC
Confidence 8887643
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=239.68 Aligned_cols=256 Identities=18% Similarity=0.178 Sum_probs=179.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+++|||||||||||++++++|++.|+ +|++++|+..... .+...... .. .....+++. |++ +.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~---~~~~~~~~--~~-~~~~~~~~~~Dl~------~~ 68 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGY---TVKATVRDLTDRK---KTEHLLAL--DG-AKERLKLFKADLL------EE 68 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCCcchH---HHHHHHhc--cC-CCCceEEEecCCC------Cc
Confidence 378999999999999999999999876 6888888754321 11111100 00 011233444 877 45
Q ss_pred HHHHHHhcCccEEEEccccccc--hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-------ccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF--DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-------NIEEI 245 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-------~i~E~ 245 (545)
+.+..+++++|+|||+|+.... ..+....+++|+.||.+++++|++.+++++|||+||.+++.... .++|+
T Consensus 69 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~ 148 (322)
T PLN02986 69 SSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDET 148 (322)
T ss_pred chHHHHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcc
Confidence 6788888999999999997643 23334578999999999999999865789999999987643211 12232
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
....| .......+.|+.||..+|++++++. .+++++++||+.|||+...+..+
T Consensus 149 ~~~~p------------------------~~~~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~- 203 (322)
T PLN02986 149 FFSDP------------------------SLCRETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLN- 203 (322)
T ss_pred cCCCh------------------------HHhhccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCC-
Confidence 21111 0001122679999999999998876 68999999999999986543211
Q ss_pred ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHH
Q psy16252 324 IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFIT 403 (545)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~ 403 (545)
+ ...++..+..|... . +....++|+|+|+|++++.++..+.. +++||++ + .++|+.|+++
T Consensus 204 ---~--~~~~~~~~~~g~~~--~--~~~~~~~v~v~Dva~a~~~al~~~~~--------~~~yni~-~--~~~s~~e~~~ 263 (322)
T PLN02986 204 ---F--SVELIVDFINGKNL--F--NNRFYRFVDVRDVALAHIKALETPSA--------NGRYIID-G--PIMSVNDIID 263 (322)
T ss_pred ---c--cHHHHHHHHcCCCC--C--CCcCcceeEHHHHHHHHHHHhcCccc--------CCcEEEe-c--CCCCHHHHHH
Confidence 1 12344444444421 2 24567999999999999999987654 4589995 4 5799999999
Q ss_pred HHHHhhcc
Q psy16252 404 KSLKEGVK 411 (545)
Q Consensus 404 ~l~~~~~~ 411 (545)
.+.+.++.
T Consensus 264 ~i~~~~~~ 271 (322)
T PLN02986 264 ILRELFPD 271 (322)
T ss_pred HHHHHCCC
Confidence 99998764
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=239.61 Aligned_cols=256 Identities=18% Similarity=0.153 Sum_probs=176.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+|||||||||||++|+++|+++|+ +|++++|+.........+.. ... .....+++. |+. ++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~-----~~~-~~~~~~~~~~Dl~------~~ 67 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY---TVKATVRDPNDPKKTEHLLA-----LDG-AKERLHLFKANLL------EE 67 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC---EEEEEEcCCCchhhHHHHHh-----ccC-CCCceEEEecccc------Cc
Confidence 368999999999999999999999976 68888887542111111100 000 011233444 777 44
Q ss_pred HHHHHHhcCccEEEEccccccc--hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccc--ccCCC-----ccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF--DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFS--NSYRK-----NIEEI 245 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v--~~~~~-----~i~E~ 245 (545)
+.+..+++++|+|||+|+.... ..+....+++|+.||.+++++|.+..++++|||+||.++ ++... .++|+
T Consensus 68 ~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~ 147 (322)
T PLN02662 68 GSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDET 147 (322)
T ss_pred chHHHHHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcc
Confidence 5688888999999999997542 233346789999999999999988647899999999864 43211 23332
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
....| .......+.|+.||..+|++++.+. .+++++++||+.|||+...+..
T Consensus 148 ~~~~p------------------------~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~-- 201 (322)
T PLN02662 148 WFSDP------------------------AFCEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTL-- 201 (322)
T ss_pred cCCCh------------------------hHhhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCC--
Confidence 21111 0011122579999999999998765 6899999999999998654321
Q ss_pred ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHH
Q psy16252 324 IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFIT 403 (545)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~ 403 (545)
......+..+..|.. ..++..++||||+|||++++.++..+.. .+.||+++ .+++++|+++
T Consensus 202 ----~~~~~~~~~~~~~~~----~~~~~~~~~i~v~Dva~a~~~~~~~~~~--------~~~~~~~g---~~~s~~e~~~ 262 (322)
T PLN02662 202 ----NTSAEAILNLINGAQ----TFPNASYRWVDVRDVANAHIQAFEIPSA--------SGRYCLVE---RVVHYSEVVK 262 (322)
T ss_pred ----CchHHHHHHHhcCCc----cCCCCCcCeEEHHHHHHHHHHHhcCcCc--------CCcEEEeC---CCCCHHHHHH
Confidence 111233344444432 1235678999999999999999876543 45788874 5799999999
Q ss_pred HHHHhhcc
Q psy16252 404 KSLKEGVK 411 (545)
Q Consensus 404 ~l~~~~~~ 411 (545)
.+.+..+.
T Consensus 263 ~i~~~~~~ 270 (322)
T PLN02662 263 ILHELYPT 270 (322)
T ss_pred HHHHHCCC
Confidence 99988654
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=241.38 Aligned_cols=262 Identities=18% Similarity=0.130 Sum_probs=175.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl 172 (545)
+++++|||||||||||++|+++|++.|+ +|++++|..........+. .+.. ...+++. |++
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~~~~~Dl~------ 69 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY---AVNTTVRDPENQKKIAHLR--------ALQELGDLKIFGADLT------ 69 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHHHHH--------hcCCCCceEEEEcCCC------
Confidence 4579999999999999999999999876 6778888753211111000 0100 1233444 887
Q ss_pred CHHHHHHHhcCccEEEEccccccch--HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC------cccc
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRFD--EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK------NIEE 244 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~~--~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~------~i~E 244 (545)
+.+.+.++++++|+|||+||..... .+...++++|+.|+.+++++|.+..++++|||+||..+++... +++|
T Consensus 70 d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E 149 (338)
T PLN00198 70 DEESFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNE 149 (338)
T ss_pred ChHHHHHHHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceecc
Confidence 5567888888999999999975432 3334577999999999999998865689999999998887421 2333
Q ss_pred cccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCC
Q psy16252 245 IIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPG 322 (545)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g 322 (545)
+.... +....+. ....+.|+.||+.+|++++.+. .+++++++||++|||+...+.
T Consensus 150 ~~~~~----------------~~~~~~~-----~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~-- 206 (338)
T PLN00198 150 KNWTD----------------VEFLTSE-----KPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSD-- 206 (338)
T ss_pred ccCCc----------------hhhhhhc-----CCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCC--
Confidence 31100 0000000 0112679999999999999876 689999999999999975421
Q ss_pred CccCccchHHHHHHHhcCceeEEec-CC----CCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCccc
Q psy16252 323 WIDNLYGPTGLVTGAQAGVVRTFLV-DP----DVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLT 397 (545)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g~~~~~~~-~~----~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t 397 (545)
.... ..++..+..|....+.+ ++ +...||+||+|+|++++.++..... ++.|+ +++ .+++
T Consensus 207 -~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~~~--------~~~~~-~~~--~~~s 271 (338)
T PLN00198 207 -IPSS---LSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCRAHIFLAEKESA--------SGRYI-CCA--ANTS 271 (338)
T ss_pred -CCCc---HHHHHHHHcCCccccccccccccccCCcceeEHHHHHHHHHHHhhCcCc--------CCcEE-Eec--CCCC
Confidence 1111 12233334443222222 11 2247999999999999998876543 35685 444 5789
Q ss_pred HHHHHHHHHHhhcc
Q psy16252 398 WGEFITKSLKEGVK 411 (545)
Q Consensus 398 ~~el~~~l~~~~~~ 411 (545)
+.++++.+.+..+.
T Consensus 272 ~~el~~~i~~~~~~ 285 (338)
T PLN00198 272 VPELAKFLIKRYPQ 285 (338)
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999887654
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-27 Score=237.31 Aligned_cols=260 Identities=17% Similarity=0.160 Sum_probs=182.1
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
|+++|+|||||||||||+++++.|++.|+ +|+++.|......... ..+. . .....++. |+.
T Consensus 1 ~~~~k~ilItGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~---~~~~-----~-~~~~~~~~~Dl~------ 62 (349)
T TIGR02622 1 FWQGKKVLVTGHTGFKGSWLSLWLLELGA---EVYGYSLDPPTSPNLF---ELLN-----L-AKKIEDHFGDIR------ 62 (349)
T ss_pred CcCCCEEEEECCCChhHHHHHHHHHHCCC---EEEEEeCCCccchhHH---HHHh-----h-cCCceEEEccCC------
Confidence 35689999999999999999999999876 6788888754321110 0000 0 01222233 776
Q ss_pred CHHHHHHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---cccc
Q psy16252 173 SPDDKRLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---NIEE 244 (545)
Q Consensus 173 ~~~~~~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---~i~E 244 (545)
+.+++..++++ +|+|||+||..... ..+...+++|+.|+.+++++|+..+.+++||++||..+|+... ++.|
T Consensus 63 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e 142 (349)
T TIGR02622 63 DAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRE 142 (349)
T ss_pred CHHHHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCcc
Confidence 66778887774 69999999964322 3346678999999999999998863378999999998887532 2333
Q ss_pred cccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEccceeecc
Q psy16252 245 IIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---------QFFPVCIFRPSIVIST 315 (545)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---------~~l~~~i~Rp~~i~g~ 315 (545)
.....| .+.|+.||..+|.+++.++ .+++++++||+.|||+
T Consensus 143 ~~~~~p------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp 192 (349)
T TIGR02622 143 TDPLGG------------------------------HDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGG 192 (349)
T ss_pred CCCCCC------------------------------CCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCC
Confidence 221111 1689999999999998764 1899999999999998
Q ss_pred CCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCc
Q psy16252 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNP 395 (545)
Q Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~ 395 (545)
+.... ..+ ...++..+..|.... .+++++.++|+||+|+|++++.++..... .....+++||++++..++
T Consensus 193 ~~~~~----~~~--~~~~~~~~~~g~~~~-~~~g~~~rd~i~v~D~a~a~~~~~~~~~~---~~~~~~~~yni~s~~~~~ 262 (349)
T TIGR02622 193 GDWAE----DRL--IPDVIRAFSSNKIVI-IRNPDATRPWQHVLEPLSGYLLLAEKLFT---GQAEFAGAWNFGPRASDN 262 (349)
T ss_pred Ccchh----hhh--hHHHHHHHhcCCCeE-ECCCCcccceeeHHHHHHHHHHHHHHHhh---cCccccceeeeCCCcccC
Confidence 53210 111 234555555665443 45788999999999999999988764321 001125799999752268
Q ss_pred ccHHHHHHHHHHhhcc
Q psy16252 396 LTWGEFITKSLKEGVK 411 (545)
Q Consensus 396 ~t~~el~~~l~~~~~~ 411 (545)
++..++++.+.+..+.
T Consensus 263 ~s~~~~~~~i~~~~~~ 278 (349)
T TIGR02622 263 ARVVELVVDALEFWWG 278 (349)
T ss_pred cCHHHHHHHHHHHhcC
Confidence 9999999988887554
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=235.27 Aligned_cols=226 Identities=20% Similarity=0.177 Sum_probs=166.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+||||||+||||++|+++|++.| .|+++.|...... . |+. +.+.+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g----~V~~~~~~~~~~~----------~--------------Dl~------d~~~~ 46 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG----NLIALDVHSTDYC----------G--------------DFS------NPEGV 46 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC----CEEEecccccccc----------C--------------CCC------CHHHH
Confidence 579999999999999999999885 3677777532100 0 776 66778
Q ss_pred HHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 178 RLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 178 ~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
.++++ ++|+||||||..... ...+..+++|+.|+.+++++|++. ++ +|||+||.++|+... ++.|+..+.|
T Consensus 47 ~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g~-~~v~~Ss~~Vy~~~~~~p~~E~~~~~P 124 (299)
T PRK09987 47 AETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-GA-WVVHYSTDYVFPGTGDIPWQETDATAP 124 (299)
T ss_pred HHHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEccceEECCCCCCCcCCCCCCCC
Confidence 77777 589999999987543 234667789999999999999997 54 799999999997643 4555433333
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
. +.|+.||+.+|+++..+. .+.+|+||++|||+... ++ .
T Consensus 125 ~------------------------------~~Yg~sK~~~E~~~~~~~--~~~~ilR~~~vyGp~~~-------~~--~ 163 (299)
T PRK09987 125 L------------------------------NVYGETKLAGEKALQEHC--AKHLIFRTSWVYAGKGN-------NF--A 163 (299)
T ss_pred C------------------------------CHHHHHHHHHHHHHHHhC--CCEEEEecceecCCCCC-------CH--H
Confidence 2 789999999999998764 46799999999997432 11 2
Q ss_pred HHHHHHHhcCceeEEecC--CCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 331 TGLVTGAQAGVVRTFLVD--PDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~--~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
..++..+..+....++++ +....+...+||++.++..++..... .++||++++ +++|+.|+++.+.+.
T Consensus 164 ~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~~--------~giyni~~~--~~~s~~e~~~~i~~~ 233 (299)
T PRK09987 164 KTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPEV--------AGLYHLVAS--GTTTWHDYAALVFEE 233 (299)
T ss_pred HHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCCC--------CCeEEeeCC--CCccHHHHHHHHHHH
Confidence 344455555554445555 44444556678888888877644332 479999998 889999999998776
Q ss_pred hc
Q psy16252 409 GV 410 (545)
Q Consensus 409 ~~ 410 (545)
.+
T Consensus 234 ~~ 235 (299)
T PRK09987 234 AR 235 (299)
T ss_pred HH
Confidence 43
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=237.67 Aligned_cols=257 Identities=17% Similarity=0.073 Sum_probs=181.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.|+ +|+++.|...... .+++....... ........+++. |++ +.+.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~r~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~Dl~------d~~~ 69 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY---EVHGLIRRSSSFN-TQRIEHIYEDP-HNVNKARMKLHYGDLT------DSSN 69 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC---EEEEEecCCcccc-hhhhhhhhhcc-ccccccceeEEEeccC------CHHH
Confidence 5899999999999999999999876 6888888754211 11222111000 000011233444 887 6677
Q ss_pred HHHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCC---ceEEEEeccccccCCC--cccccc
Q psy16252 177 KRLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNL---KMFTYVSTAFSNSYRK--NIEEII 246 (545)
Q Consensus 177 ~~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~---~~~v~vSS~~v~~~~~--~i~E~~ 246 (545)
+.+++++ +|+|||+||..... .......++|+.||.+++++|++. ++ ++|||+||.++|+... ++.|+.
T Consensus 70 l~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~-~~~~~~~~v~~SS~~vyg~~~~~~~~E~~ 148 (343)
T TIGR01472 70 LRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTL-GLIKSVKFYQASTSELYGKVQEIPQNETT 148 (343)
T ss_pred HHHHHHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHh-CCCcCeeEEEeccHHhhCCCCCCCCCCCC
Confidence 8888874 69999999976432 223456688999999999999986 44 4899999999998642 344432
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCc
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
...| .+.|+.||..+|.+++.++ .++++++.|+.+++|+.... ...
T Consensus 149 ~~~p------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~--~~~ 196 (343)
T TIGR01472 149 PFYP------------------------------RSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGE--NFV 196 (343)
T ss_pred CCCC------------------------------CChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCc--ccc
Confidence 2212 1789999999999998876 58999999999999875321 111
Q ss_pred cCccchHHHHHHHhcCc-eeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHH
Q psy16252 325 DNLYGPTGLVTGAQAGV-VRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFIT 403 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~ 403 (545)
. .....++..+..|. ...+++++++.+||+||+|+|++++.++.+.. +++||++++ +++|+.|+++
T Consensus 197 ~--~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a~~~~~~~~~---------~~~yni~~g--~~~s~~e~~~ 263 (343)
T TIGR01472 197 T--RKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEAMWLMLQQDK---------PDDYVIATG--ETHSVREFVE 263 (343)
T ss_pred c--hHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHHHHHHHhcCC---------CccEEecCC--CceeHHHHHH
Confidence 0 11123334444454 33456888999999999999999999886532 368999998 8999999999
Q ss_pred HHHHhhcc
Q psy16252 404 KSLKEGVK 411 (545)
Q Consensus 404 ~l~~~~~~ 411 (545)
.+.+..++
T Consensus 264 ~i~~~~g~ 271 (343)
T TIGR01472 264 VSFEYIGK 271 (343)
T ss_pred HHHHHcCC
Confidence 99998875
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=236.40 Aligned_cols=223 Identities=14% Similarity=0.125 Sum_probs=167.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+|||||||+|++|+++|+++|+ +|.+++|+.... ..+ .....+++. |+. +++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~---~V~~l~R~~~~~---~~l-----------~~~~v~~v~~Dl~------d~~~ 57 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY---QVRCLVRNLRKA---SFL-----------KEWGAELVYGDLS------LPET 57 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC---eEEEEEcChHHh---hhH-----------hhcCCEEEECCCC------CHHH
Confidence 5799999999999999999999876 689999974321 111 111334444 776 6678
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHHH
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSEL 256 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~ 256 (545)
+..+++++|+|||+++... .....+.++|+.++.+++++|+++ ++++|||+||..+....
T Consensus 58 l~~al~g~d~Vi~~~~~~~--~~~~~~~~~~~~~~~~l~~aa~~~-gvkr~I~~Ss~~~~~~~----------------- 117 (317)
T CHL00194 58 LPPSFKGVTAIIDASTSRP--SDLYNAKQIDWDGKLALIEAAKAA-KIKRFIFFSILNAEQYP----------------- 117 (317)
T ss_pred HHHHHCCCCEEEECCCCCC--CCccchhhhhHHHHHHHHHHHHHc-CCCEEEEeccccccccC-----------------
Confidence 8999999999999976432 223456789999999999999997 89999999996432110
Q ss_pred HHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHHH
Q psy16252 257 LKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTG 336 (545)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~ 336 (545)
...|..+|..+|+++++ .+++++|+||+.+|+..-. .....
T Consensus 118 ------------------------~~~~~~~K~~~e~~l~~--~~l~~tilRp~~~~~~~~~-------------~~~~~ 158 (317)
T CHL00194 118 ------------------------YIPLMKLKSDIEQKLKK--SGIPYTIFRLAGFFQGLIS-------------QYAIP 158 (317)
T ss_pred ------------------------CChHHHHHHHHHHHHHH--cCCCeEEEeecHHhhhhhh-------------hhhhh
Confidence 14588999999999976 5899999999987753100 01111
Q ss_pred HhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 337 AQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 337 ~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
...+.. .+...++..+++|+++|+|++++.++..+.. .+++||++++ +++|++|+++.+.+..|+.
T Consensus 159 ~~~~~~-~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~-------~~~~~ni~g~--~~~s~~el~~~~~~~~g~~ 224 (317)
T CHL00194 159 ILEKQP-IWITNESTPISYIDTQDAAKFCLKSLSLPET-------KNKTFPLVGP--KSWNSSEIISLCEQLSGQK 224 (317)
T ss_pred hccCCc-eEecCCCCccCccCHHHHHHHHHHHhcCccc-------cCcEEEecCC--CccCHHHHHHHHHHHhCCC
Confidence 112222 2334556778999999999999999876543 4789999998 8999999999999998874
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=234.29 Aligned_cols=245 Identities=24% Similarity=0.227 Sum_probs=183.6
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDK 177 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~ 177 (545)
+|||||||||||++|+++|++.|+ .|+.+.|......... ....++. |+. +.+..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~---------------~~~~~~~~d~~------~~~~~ 57 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH---DVRGLDRLRDGLDPLL---------------SGVEFVVLDLT------DRDLV 57 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC---eEEEEeCCCccccccc---------------cccceeeeccc------chHHH
Confidence 499999999999999999999876 6888888755432110 0111222 555 33556
Q ss_pred HHHhcCc-cEEEEccccccchHH----HHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC--C-cccccc-cC
Q psy16252 178 RLVTSKV-NLVFHCAATLRFDEE----LKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR--K-NIEEII-YK 248 (545)
Q Consensus 178 ~~l~~~v-d~Vih~Aa~~~~~~~----~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~--~-~i~E~~-~~ 248 (545)
..+.+++ |+|||+|+....... +..++.+|+.||.+++++|++. ++++|||.||.++++.. . .++|+. .+
T Consensus 58 ~~~~~~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~-~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~ 136 (314)
T COG0451 58 DELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAA-GVKRFVFASSVSVVYGDPPPLPIDEDLGPP 136 (314)
T ss_pred HHHHhcCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCCCceECCCCCCCCcccccCCC
Confidence 7777777 999999998765443 3458899999999999999995 89999998887776643 1 344442 11
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
.| .+.|+.||+.+|+.+..+. .+++++++||+.|||+...+. +..
T Consensus 137 ~p------------------------------~~~Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~--~~~- 183 (314)
T COG0451 137 RP------------------------------LNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPD--LSS- 183 (314)
T ss_pred CC------------------------------CCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCC--CCc-
Confidence 11 1379999999999999987 589999999999999876542 111
Q ss_pred ccchHHHHHHHhcCce-eEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCC-cccHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVV-RTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDN-PLTWGEFITK 404 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~-~~t~~el~~~ 404 (545)
.....++.....+.. ..+.+++....++++++|+|++++.++.+... . +||++++ . ++++.|+++.
T Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--------~-~~ni~~~--~~~~~~~e~~~~ 251 (314)
T COG0451 184 -GVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDG--------G-VFNIGSG--TAEITVRELAEA 251 (314)
T ss_pred -CcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCCC--------c-EEEeCCC--CCcEEHHHHHHH
Confidence 112334444555553 55666778889999999999999999988876 4 9999998 6 8999999999
Q ss_pred HHHhhcccC
Q psy16252 405 SLKEGVKIP 413 (545)
Q Consensus 405 l~~~~~~~~ 413 (545)
+.+..+..+
T Consensus 252 ~~~~~~~~~ 260 (314)
T COG0451 252 VAEAVGSKA 260 (314)
T ss_pred HHHHhCCCC
Confidence 999987753
|
|
| >KOG0747|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=218.28 Aligned_cols=253 Identities=20% Similarity=0.182 Sum_probs=188.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.++|+||||.||+|++.+..+...-++. ..+++.--.-... ...++... ...+..+++ |+.+. .
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~-~~v~idkL~~~s~-~~~l~~~~-------n~p~ykfv~~di~~~------~ 70 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDKYPDY-KFVNLDKLDYCSN-LKNLEPVR-------NSPNYKFVEGDIADA------D 70 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccCCCCC-cEEEEeecccccc-cchhhhhc-------cCCCceEeeccccch------H
Confidence 4899999999999999999999985544 4444433221111 22222111 112334555 77632 3
Q ss_pred HHHHHh--cCccEEEEccccccchHHH---HHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCc--c-ccccc
Q psy16252 176 DKRLVT--SKVNLVFHCAATLRFDEEL---KEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKN--I-EEIIY 247 (545)
Q Consensus 176 ~~~~l~--~~vd~Vih~Aa~~~~~~~~---~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~--i-~E~~~ 247 (545)
.+..++ +++|.|+|.||..+....+ -++...|+.+|..|++.++..+++++|||+||..|||+... . .|...
T Consensus 71 ~~~~~~~~~~id~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~ 150 (331)
T KOG0747|consen 71 LVLYLFETEEIDTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASL 150 (331)
T ss_pred HHHhhhccCchhhhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccccccc
Confidence 333333 4899999999987655433 34568899999999999999989999999999999998642 2 24333
Q ss_pred CCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCcc
Q psy16252 248 KAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
+.|. |+|+.||+.||++++++. .++|++++|.++||||.+.+..
T Consensus 151 ~nPt------------------------------npyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~k---- 196 (331)
T KOG0747|consen 151 LNPT------------------------------NPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEK---- 196 (331)
T ss_pred CCCC------------------------------CchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChHH----
Confidence 3332 899999999999999997 8999999999999999766521
Q ss_pred CccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHH
Q psy16252 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKS 405 (545)
Q Consensus 326 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l 405 (545)
....++..+..+....+.+++....+++||+|+++|+.+++.+... +++|||++. .+.+..|+++.+
T Consensus 197 ---lipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~Kg~~--------geIYNIgtd--~e~~~~~l~k~i 263 (331)
T KOG0747|consen 197 ---LIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEKGEL--------GEIYNIGTD--DEMRVIDLAKDI 263 (331)
T ss_pred ---HhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHHhcCCc--------cceeeccCc--chhhHHHHHHHH
Confidence 1123444445555556789999999999999999999999988544 899999998 789999999999
Q ss_pred HHhhcc
Q psy16252 406 LKEGVK 411 (545)
Q Consensus 406 ~~~~~~ 411 (545)
.+.+.+
T Consensus 264 ~eli~~ 269 (331)
T KOG0747|consen 264 CELFEK 269 (331)
T ss_pred HHHHHH
Confidence 998765
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-27 Score=234.27 Aligned_cols=255 Identities=17% Similarity=0.154 Sum_probs=177.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+||||||+||||++|+++|++.|+ +|++++|+...... ...... ... ...+..++. |++ +.+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~---~~~~~~--~~~-~~~~~~~~~~D~~------d~~ 69 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY---TINATVRDPKDRKK---TDHLLA--LDG-AKERLKLFKADLL------DEG 69 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC---EEEEEEcCCcchhh---HHHHHh--ccC-CCCceEEEeCCCC------Cch
Confidence 68999999999999999999999876 57777777543211 111000 000 001233344 777 556
Q ss_pred HHHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-------ccccc
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-------NIEEI 245 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-------~i~E~ 245 (545)
.+.++++++|+|||+||.... ...+...+++|+.|+.+++++|.+..++++||++||.++++... .++|+
T Consensus 70 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~ 149 (325)
T PLN02989 70 SFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDET 149 (325)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcC
Confidence 788888899999999997532 23456788999999999999998854578999999987654321 23443
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
....|. ......+.|+.||..+|++++.+. .+++++++||+++||+...+..+
T Consensus 150 ~~~~p~------------------------~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~- 204 (325)
T PLN02989 150 FFTNPS------------------------FAEERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLN- 204 (325)
T ss_pred CCCchh------------------------HhcccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCC-
Confidence 222111 000112679999999999998865 68999999999999987554211
Q ss_pred ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHH
Q psy16252 324 IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFIT 403 (545)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~ 403 (545)
+ ...++..+..|..+ .. ....+|+||+|+|++++.++..... +++||++ + .++|++|+++
T Consensus 205 ---~--~~~~i~~~~~~~~~--~~--~~~r~~i~v~Dva~a~~~~l~~~~~--------~~~~ni~-~--~~~s~~ei~~ 264 (325)
T PLN02989 205 ---F--SVAVIVELMKGKNP--FN--TTHHRFVDVRDVALAHVKALETPSA--------NGRYIID-G--PVVTIKDIEN 264 (325)
T ss_pred ---c--hHHHHHHHHcCCCC--CC--CcCcCeeEHHHHHHHHHHHhcCccc--------CceEEEe-c--CCCCHHHHHH
Confidence 1 12344444455432 11 3457899999999999999876543 4689995 4 4799999999
Q ss_pred HHHHhhcc
Q psy16252 404 KSLKEGVK 411 (545)
Q Consensus 404 ~l~~~~~~ 411 (545)
.+.+.++.
T Consensus 265 ~i~~~~~~ 272 (325)
T PLN02989 265 VLREFFPD 272 (325)
T ss_pred HHHHHCCC
Confidence 99998753
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-27 Score=236.65 Aligned_cols=259 Identities=18% Similarity=0.196 Sum_probs=171.8
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+++|||||||||||++|+++|++.|+ +|++++|...... .+...... ... .....++. |+. +.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~---~V~~~~r~~~~~~---~~~~~~~~--~~~-~~~~~~v~~Dl~------d~ 68 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY---TVRATVRDPANVK---KVKHLLDL--PGA-TTRLTLWKADLA------VE 68 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC---EEEEEEcCcchhH---HHHHHHhc--cCC-CCceEEEEecCC------Ch
Confidence 368999999999999999999999876 6888888643221 11111000 000 01123344 777 45
Q ss_pred HHHHHHhcCccEEEEccccccch--HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---c-ccccccC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFD--EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---N-IEEIIYK 248 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~--~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---~-i~E~~~~ 248 (545)
+.+.++++++|+|||+|+..... .+....+++|+.||.+++++|.+...+++|||+||.++++... + ++|+...
T Consensus 69 ~~~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~ 148 (351)
T PLN02650 69 GSFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWS 148 (351)
T ss_pred hhHHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCC
Confidence 67888888999999999976432 2334678999999999999999864478999999997665321 1 2332110
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
+. ... . ......+.|+.||..+|.+++.+. .+++++++||++|||+...+. .
T Consensus 149 -~~----------------~~~---~-~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~---~-- 202 (351)
T PLN02650 149 -DL----------------DFC---R-RKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTS---M-- 202 (351)
T ss_pred -ch----------------hhh---h-ccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCC---C--
Confidence 00 000 0 000111579999999999998876 689999999999999865421 0
Q ss_pred ccchHHHHHH--HhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHH
Q psy16252 327 LYGPTGLVTG--AQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITK 404 (545)
Q Consensus 327 ~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~ 404 (545)
+..++.. ...+.... .+ .....+|+||+|+|++++.++..+.. +++|+ +++ .++++.|+++.
T Consensus 203 ---~~~~~~~~~~~~~~~~~-~~-~~~~r~~v~V~Dva~a~~~~l~~~~~--------~~~~i-~~~--~~~s~~el~~~ 266 (351)
T PLN02650 203 ---PPSLITALSLITGNEAH-YS-IIKQGQFVHLDDLCNAHIFLFEHPAA--------EGRYI-CSS--HDATIHDLAKM 266 (351)
T ss_pred ---CccHHHHHHHhcCCccc-cC-cCCCcceeeHHHHHHHHHHHhcCcCc--------CceEE-ecC--CCcCHHHHHHH
Confidence 0111111 12222211 12 12347999999999999999876543 45784 555 67999999999
Q ss_pred HHHhhcc
Q psy16252 405 SLKEGVK 411 (545)
Q Consensus 405 l~~~~~~ 411 (545)
+.+..+.
T Consensus 267 i~~~~~~ 273 (351)
T PLN02650 267 LREKYPE 273 (351)
T ss_pred HHHhCcc
Confidence 9987653
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=230.33 Aligned_cols=258 Identities=17% Similarity=0.063 Sum_probs=180.1
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+|||||||||||++|+++|++.|+ +|+++.|....... .++...... .........++. |+. +.
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~---~V~~~~r~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~Dl~------d~ 72 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGY---EVHGIIRRSSNFNT-QRLDHIYID--PHPNKARMKLHYGDLS------DA 72 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC---EEEEEecccccccc-cchhhhccc--cccccCceEEEEecCC------CH
Confidence 478999999999999999999999876 68888886542110 111111000 000001123333 776 56
Q ss_pred HHHHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCc-----eEEEEeccccccCCC-ccc
Q psy16252 175 DDKRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLK-----MFTYVSTAFSNSYRK-NIE 243 (545)
Q Consensus 175 ~~~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~-----~~v~vSS~~v~~~~~-~i~ 243 (545)
+.+..+++ .+|+|||+||..... ......+++|+.||.+++++|.+. +++ +||++||..+|+... ++.
T Consensus 73 ~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~~~~~~v~~Ss~~vyg~~~~~~~ 151 (340)
T PLN02653 73 SSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLH-GQETGRQIKYYQAGSSEMYGSTPPPQS 151 (340)
T ss_pred HHHHHHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHh-ccccccceeEEEeccHHHhCCCCCCCC
Confidence 67777776 469999999975432 234556789999999999999986 543 899999999998643 344
Q ss_pred ccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCC
Q psy16252 244 EIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIP 321 (545)
Q Consensus 244 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~ 321 (545)
|+....| .+.|+.||+.+|.+++.++ .+++++..|+.++||+....
T Consensus 152 E~~~~~p------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~-- 199 (340)
T PLN02653 152 ETTPFHP------------------------------RSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGE-- 199 (340)
T ss_pred CCCCCCC------------------------------CChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCc--
Confidence 4322211 2689999999999998876 57888888998888874321
Q ss_pred CCccCccchHHHHHHHhcCce-eEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHH
Q psy16252 322 GWIDNLYGPTGLVTGAQAGVV-RTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGE 400 (545)
Q Consensus 322 g~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~e 400 (545)
.+... ....++..+..|.. ..+.+++++.++|+||+|+|++++.++.... +++||++++ +++|+.|
T Consensus 200 ~~~~~--~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~---------~~~yni~~g--~~~s~~e 266 (340)
T PLN02653 200 NFVTR--KITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYVEAMWLMLQQEK---------PDDYVVATE--ESHTVEE 266 (340)
T ss_pred ccchh--HHHHHHHHHHcCCCCceEeCCCcceecceeHHHHHHHHHHHHhcCC---------CCcEEecCC--CceeHHH
Confidence 11000 01122333344543 3345888999999999999999999987532 468999998 8999999
Q ss_pred HHHHHHHhhcc
Q psy16252 401 FITKSLKEGVK 411 (545)
Q Consensus 401 l~~~l~~~~~~ 411 (545)
+++.+.+..+.
T Consensus 267 ~~~~i~~~~g~ 277 (340)
T PLN02653 267 FLEEAFGYVGL 277 (340)
T ss_pred HHHHHHHHcCC
Confidence 99999998875
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=230.89 Aligned_cols=234 Identities=14% Similarity=0.059 Sum_probs=168.4
Q ss_pred EEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHHHHH
Q psy16252 101 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKRLV 180 (545)
Q Consensus 101 lITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~~~l 180 (545)
||||||||||++|++.|++.|++ |+++.+.... |+. +.+.+..+
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~---v~~~~~~~~~---------------------------Dl~------~~~~l~~~ 44 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFT---NLVLRTHKEL---------------------------DLT------RQADVEAF 44 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCc---EEEeeccccC---------------------------CCC------CHHHHHHH
Confidence 69999999999999999998764 4433332110 776 55677777
Q ss_pred hc--CccEEEEccccccc----hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCCCC
Q psy16252 181 TS--KVNLVFHCAATLRF----DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAHTH 252 (545)
Q Consensus 181 ~~--~vd~Vih~Aa~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~~~ 252 (545)
++ ++|+|||+||.... ......++++|+.++.+++++|++. ++++|||+||.++|+... +++|+....
T Consensus 45 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~SS~~vyg~~~~~~~~E~~~~~--- 120 (306)
T PLN02725 45 FAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRH-GVKKLLFLGSSCIYPKFAPQPIPETALLT--- 120 (306)
T ss_pred HhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHc-CCCeEEEeCceeecCCCCCCCCCHHHhcc---
Confidence 66 57999999997532 2334567899999999999999997 789999999999987532 344432110
Q ss_pred HHHHHHhhhccCCchhHHHhhhhhcCCCC-c-hHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCcc
Q psy16252 253 YSELLKISKLDVDDPKYQETRERLSHENM-N-TYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLY 328 (545)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~ 328 (545)
....| + .|+.||..+|++++.+. .+++++++||+.|||+..... +-...+
T Consensus 121 ------------------------~~~~p~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~-~~~~~~- 174 (306)
T PLN02725 121 ------------------------GPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFH-PENSHV- 174 (306)
T ss_pred ------------------------CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCC-CCCCcc-
Confidence 00111 3 49999999999988765 689999999999999864211 100111
Q ss_pred chHHHHH----HHhcCceeEE-ecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHH
Q psy16252 329 GPTGLVT----GAQAGVVRTF-LVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFIT 403 (545)
Q Consensus 329 ~~~~~~~----~~~~g~~~~~-~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~ 403 (545)
...++. ....|....+ +++++...+++||+|+|++++.++..... .+.||++++ .++++.|+++
T Consensus 175 -~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~~~--------~~~~ni~~~--~~~s~~e~~~ 243 (306)
T PLN02725 175 -IPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYSG--------AEHVNVGSG--DEVTIKELAE 243 (306)
T ss_pred -cHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhcccc--------CcceEeCCC--CcccHHHHHH
Confidence 112222 2233443333 67788889999999999999998876433 468899988 8999999999
Q ss_pred HHHHhhcc
Q psy16252 404 KSLKEGVK 411 (545)
Q Consensus 404 ~l~~~~~~ 411 (545)
.+.+.++.
T Consensus 244 ~i~~~~~~ 251 (306)
T PLN02725 244 LVKEVVGF 251 (306)
T ss_pred HHHHHhCC
Confidence 99998764
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=223.66 Aligned_cols=226 Identities=26% Similarity=0.274 Sum_probs=173.4
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDKR 178 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~~ 178 (545)
|||||||||||++|+++|+++|+ .|+.+.|++......... ....++. |+. +.+.+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~---~v~~~~~~~~~~~~~~~~-------------~~~~~~~~dl~------~~~~~~ 58 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH---EVIVLSRSSNSESFEEKK-------------LNVEFVIGDLT------DKEQLE 58 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT---EEEEEESCSTGGHHHHHH-------------TTEEEEESETT------SHHHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCC---cccccccccccccccccc-------------ceEEEEEeecc------cccccc
Confidence 79999999999999999999976 577888876543111100 0222222 676 678888
Q ss_pred HHhcCc--cEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCCC
Q psy16252 179 LVTSKV--NLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAHT 251 (545)
Q Consensus 179 ~l~~~v--d~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~~ 251 (545)
++++.. |+|||+|+.... .......++.|+.++.+++++|.+. ++++|||+||..+++... +++|+....|.
T Consensus 59 ~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~sS~~~y~~~~~~~~~e~~~~~~~ 137 (236)
T PF01370_consen 59 KLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREA-GVKRFIFLSSASVYGDPDGEPIDEDSPINPL 137 (236)
T ss_dssp HHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEGGGGTSSSSSSBETTSGCCHS
T ss_pred ccccccCceEEEEeeccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 888865 999999998632 1345677899999999999999997 779999999999998762 44554433222
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCccc
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLYG 329 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~ 329 (545)
+.|+.+|..+|++++.+. .+++++++||+.|||+. .+. +... ..
T Consensus 138 ------------------------------~~Y~~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~-~~~-~~~~--~~ 183 (236)
T PF01370_consen 138 ------------------------------SPYGASKRAAEELLRDYAKKYGLRVTILRPPNVYGPG-NPN-NNSS--SF 183 (236)
T ss_dssp ------------------------------SHHHHHHHHHHHHHHHHHHHHTSEEEEEEESEEESTT-SSS-SSTS--SH
T ss_pred ------------------------------ccccccccccccccccccccccccccccccccccccc-ccc-cccc--cc
Confidence 679999999999999887 59999999999999997 111 1111 12
Q ss_pred hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 330 PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
...++..+..|....++++++..++++|++|+|++++.++.++.. .+++||++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~-------~~~~yNig 236 (236)
T PF01370_consen 184 LPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKA-------AGGIYNIG 236 (236)
T ss_dssp HHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCT-------TTEEEEES
T ss_pred cchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCC-------CCCEEEeC
Confidence 245677777787666789999999999999999999999998873 37999985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=226.46 Aligned_cols=224 Identities=20% Similarity=0.180 Sum_probs=170.5
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKR 178 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~~ 178 (545)
+|||||||||+|++++++|++.|+ +|+++.|... |+. +.+.+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~---~v~~~~r~~~----------------------------d~~------~~~~~~ 43 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR---VVVALTSSQL----------------------------DLT------DPEALE 43 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC---EEEEeCCccc----------------------------CCC------CHHHHH
Confidence 489999999999999999999876 6888877521 665 567777
Q ss_pred HHhcCc--cEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCCC
Q psy16252 179 LVTSKV--NLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAHT 251 (545)
Q Consensus 179 ~l~~~v--d~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~~ 251 (545)
++++++ |+|||+|+..... ......+++|+.++.+++++|++. +. +||++||.++|+... +++|+..+.|
T Consensus 44 ~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~Ss~~vy~~~~~~~~~E~~~~~~- 120 (287)
T TIGR01214 44 RLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-GA-RLVHISTDYVFDGEGKRPYREDDATNP- 120 (287)
T ss_pred HHHHhCCCCEEEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeeeeecCCCCCCCCCCCCCCC-
Confidence 777765 9999999976432 234567899999999999999986 44 899999999987532 3444422211
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchH
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPT 331 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~ 331 (545)
.+.|+.+|..+|++++.+ +++++|+||+.|||+... .++ ..
T Consensus 121 -----------------------------~~~Y~~~K~~~E~~~~~~--~~~~~ilR~~~v~G~~~~------~~~--~~ 161 (287)
T TIGR01214 121 -----------------------------LNVYGQSKLAGEQAIRAA--GPNALIVRTSWLYGGGGG------RNF--VR 161 (287)
T ss_pred -----------------------------cchhhHHHHHHHHHHHHh--CCCeEEEEeeecccCCCC------CCH--HH
Confidence 268999999999999885 689999999999998531 011 22
Q ss_pred HHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhcc
Q psy16252 332 GLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVK 411 (545)
Q Consensus 332 ~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~ 411 (545)
.++..+..+....+. ++...++++++|+|++++.++..... .+++||++++ +++++.|+++.+.+.++.
T Consensus 162 ~~~~~~~~~~~~~~~--~~~~~~~v~v~Dva~a~~~~~~~~~~-------~~~~~ni~~~--~~~s~~e~~~~i~~~~~~ 230 (287)
T TIGR01214 162 TMLRLAGRGEELRVV--DDQIGSPTYAKDLARVIAALLQRLAR-------ARGVYHLANS--GQCSWYEFAQAIFEEAGA 230 (287)
T ss_pred HHHHHhhcCCCceEe--cCCCcCCcCHHHHHHHHHHHHhhccC-------CCCeEEEECC--CCcCHHHHHHHHHHHhCc
Confidence 344444444322222 34678999999999999999876532 3789999998 899999999999999886
Q ss_pred c
Q psy16252 412 I 412 (545)
Q Consensus 412 ~ 412 (545)
.
T Consensus 231 ~ 231 (287)
T TIGR01214 231 D 231 (287)
T ss_pred c
Confidence 4
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=229.87 Aligned_cols=245 Identities=18% Similarity=0.158 Sum_probs=171.3
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDKR 178 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~~ 178 (545)
|||||||||||+++++.|++.|+. .|+++.|..... ++..... ..+. |+. +.+.++
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~--~v~~~~~~~~~~----~~~~~~~-----------~~~~~d~~------~~~~~~ 57 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT--DILVVDNLRDGH----KFLNLAD-----------LVIADYID------KEDFLD 57 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc--eEEEEecCCCch----hhhhhhh-----------eeeeccCc------chhHHH
Confidence 699999999999999999998752 577776654321 1111000 0111 444 334455
Q ss_pred HHh----cCccEEEEccccccch-HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-cccccccCCCCC
Q psy16252 179 LVT----SKVNLVFHCAATLRFD-EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-NIEEIIYKAHTH 252 (545)
Q Consensus 179 ~l~----~~vd~Vih~Aa~~~~~-~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-~i~E~~~~~~~~ 252 (545)
.+. .++|+|||+||..... .+....+++|+.|+.+++++|.+. ++ +|||+||.++|+... .+.|+..+.
T Consensus 58 ~~~~~~~~~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy~~~~~~~~e~~~~~--- 132 (314)
T TIGR02197 58 RLEKGAFGKIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEK-GI-PFIYASSAATYGDGEAGFREGRELE--- 132 (314)
T ss_pred HHHhhccCCCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHh-CC-cEEEEccHHhcCCCCCCcccccCcC---
Confidence 554 4899999999975432 344667899999999999999986 55 799999999987542 222221100
Q ss_pred HHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceeeccCCCCCCCCccCcc
Q psy16252 253 YSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVISTWKEPIPGWIDNLY 328 (545)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~ 328 (545)
...+.|+.||+.+|.+++++. .+++++++||+.|||++.....+ ..++
T Consensus 133 --------------------------~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~-~~~~- 184 (314)
T TIGR02197 133 --------------------------RPLNVYGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGK-MASV- 184 (314)
T ss_pred --------------------------CCCCHHHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCC-cccH-
Confidence 112689999999999998642 46799999999999986543211 1111
Q ss_pred chHHHHHHHhcCceeEEe------cCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHH
Q psy16252 329 GPTGLVTGAQAGVVRTFL------VDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFI 402 (545)
Q Consensus 329 ~~~~~~~~~~~g~~~~~~------~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~ 402 (545)
...++..+..+....++ +++++.++++|++|+|++++.++.. .. +++||++++ .++|+.|++
T Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~-~~--------~~~yni~~~--~~~s~~e~~ 252 (314)
T TIGR02197 185 -AFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLWLLEN-GV--------SGIFNLGTG--RARSFNDLA 252 (314)
T ss_pred -HHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHHHHHhc-cc--------CceEEcCCC--CCccHHHHH
Confidence 12344444555433332 4567789999999999999999876 33 579999998 899999999
Q ss_pred HHHHHhhccc
Q psy16252 403 TKSLKEGVKI 412 (545)
Q Consensus 403 ~~l~~~~~~~ 412 (545)
+.+.+.++..
T Consensus 253 ~~i~~~~g~~ 262 (314)
T TIGR02197 253 DAVFKALGKD 262 (314)
T ss_pred HHHHHHhCCC
Confidence 9999998864
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=230.73 Aligned_cols=267 Identities=16% Similarity=0.103 Sum_probs=182.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCC-HHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS-PQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~-~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+.+++|+|||||||||++|+++|+++|+ +|+++.|...... ...++.... .. ......++. |+.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~D~~------ 68 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY---KVVVIDNLDNSSEEALRRVKELA----GD-LGDNLVFHKVDLR------ 68 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCCcchHHHHHHHHHhh----cc-cCccceEEecCcC------
Confidence 4578999999999999999999999875 6888877543211 111111110 00 011233334 776
Q ss_pred CHHHHHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--ccccc
Q psy16252 173 SPDDKRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEI 245 (545)
Q Consensus 173 ~~~~~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~ 245 (545)
+.+.+..+++ ++|+|||+||..... ......+++|+.++.+++++|++. ++++||++||+++++... +++|+
T Consensus 69 ~~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~vyg~~~~~~~~E~ 147 (352)
T PLN02240 69 DKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GCKKLVFSSSATVYGQPEEVPCTEE 147 (352)
T ss_pred CHHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccHHHhCCCCCCCCCCC
Confidence 6677777765 689999999975322 345668899999999999999986 789999999998887532 34444
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeeccCCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVISTWKEPIPG 322 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~~~~~~~g 322 (545)
....| .+.|+.||+.+|++++.+. .+++++++|++.+||++....-|
T Consensus 148 ~~~~~------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g 197 (352)
T PLN02240 148 FPLSA------------------------------TNPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIG 197 (352)
T ss_pred CCCCC------------------------------CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCcccccc
Confidence 22211 2689999999999998764 47899999999999976432211
Q ss_pred CccC-c-cchHHHHHHHhcCcee--EEec------CCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCC
Q psy16252 323 WIDN-L-YGPTGLVTGAQAGVVR--TFLV------DPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSK 392 (545)
Q Consensus 323 ~~~~-~-~~~~~~~~~~~~g~~~--~~~~------~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~ 392 (545)
.... . .....++..+..+..+ .+.+ ++.+.+++|+++|+|++++.++..... .....+++||++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~D~a~a~~~a~~~~~~---~~~~~~~~yni~~~- 273 (352)
T PLN02240 198 EDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDYIHVMDLADGHIAALRKLFT---DPDIGCEAYNLGTG- 273 (352)
T ss_pred CCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEeeEEHHHHHHHHHHHHhhhhh---ccCCCCceEEccCC-
Confidence 1110 0 1112334444433322 2232 568889999999999999988765311 11123589999998
Q ss_pred CCcccHHHHHHHHHHhhcc
Q psy16252 393 DNPLTWGEFITKSLKEGVK 411 (545)
Q Consensus 393 ~~~~t~~el~~~l~~~~~~ 411 (545)
+++|++|+++.+.+.++.
T Consensus 274 -~~~s~~el~~~i~~~~g~ 291 (352)
T PLN02240 274 -KGTSVLEMVAAFEKASGK 291 (352)
T ss_pred -CcEeHHHHHHHHHHHhCC
Confidence 899999999999999875
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-26 Score=227.27 Aligned_cols=251 Identities=21% Similarity=0.214 Sum_probs=198.3
Q ss_pred CCCchhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CC
Q psy16252 87 SPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SA 165 (545)
Q Consensus 87 ~~~~~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl 165 (545)
+.+.+..++.||+||||||+|.+|+.+++++++.+ .++++.+.|++.+. ..+...+...| ...+..++- |+
T Consensus 240 d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~--p~~i~l~~~~E~~~---~~i~~el~~~~---~~~~~~~~igdV 311 (588)
T COG1086 240 DTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFN--PKEIILFSRDEYKL---YLIDMELREKF---PELKLRFYIGDV 311 (588)
T ss_pred CHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcC--CCEEEEecCchHHH---HHHHHHHHhhC---CCcceEEEeccc
Confidence 45677888999999999999999999999999984 56999999986532 11111111111 111111111 88
Q ss_pred CCCCCCCCHHHHHHHhcC--ccEEEEcccccc---chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC
Q psy16252 166 QAPDLGLSPDDKRLVTSK--VNLVFHCAATLR---FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 166 ~~~~lgl~~~~~~~l~~~--vd~Vih~Aa~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~ 240 (545)
. |.+.+..++++ +|+|||+||.-+ ...++.+.+++||.||.|++++|.++ ++++||.+||.-+..+.
T Consensus 312 r------D~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~Pt- 383 (588)
T COG1086 312 R------DRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNPT- 383 (588)
T ss_pred c------cHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCCc-
Confidence 8 77889999998 999999999754 35677889999999999999999998 99999999999654321
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---c--CCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---Q--FFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~--~l~~~i~Rp~~i~g~ 315 (545)
|.||.||.+||+++..+. . +-.++++|.|+|.|+
T Consensus 384 -----------------------------------------NvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGS 422 (588)
T COG1086 384 -----------------------------------------NVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGS 422 (588)
T ss_pred -----------------------------------------hHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecC
Confidence 889999999999999886 2 488999999999999
Q ss_pred CCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCc
Q psy16252 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNP 395 (545)
Q Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~ 395 (545)
+.+-+| -+..++..|...+ ..+++..+-|+.+.+.|+.++.+...... |.+|-+-.+ +|
T Consensus 423 rGSViP----------lFk~QI~~GgplT-vTdp~mtRyfMTI~EAv~LVlqA~a~~~g--------GeifvldMG--ep 481 (588)
T COG1086 423 RGSVIP----------LFKKQIAEGGPLT-VTDPDMTRFFMTIPEAVQLVLQAGAIAKG--------GEIFVLDMG--EP 481 (588)
T ss_pred CCCCHH----------HHHHHHHcCCCcc-ccCCCceeEEEEHHHHHHHHHHHHhhcCC--------CcEEEEcCC--CC
Confidence 766443 3445556665443 46889999999999999999999877654 899999998 89
Q ss_pred ccHHHHHHHHHHhhcccCCC
Q psy16252 396 LTWGEFITKSLKEGVKIPSS 415 (545)
Q Consensus 396 ~t~~el~~~l~~~~~~~~~~ 415 (545)
+++.|+++.+.+..|..|..
T Consensus 482 vkI~dLAk~mi~l~g~~~~~ 501 (588)
T COG1086 482 VKIIDLAKAMIELAGQTPPG 501 (588)
T ss_pred eEHHHHHHHHHHHhCCCCCC
Confidence 99999999999998855443
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=226.60 Aligned_cols=243 Identities=22% Similarity=0.262 Sum_probs=176.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+||||+||||+++++.|++.|+ +|+++.|+...... + .....+++. |+. +.++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~---~-----------~~~~~~~~~~D~~------~~~~ 57 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE---EVRVLVRPTSDRRN---L-----------EGLDVEIVEGDLR------DPAS 57 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC---EEEEEEecCccccc---c-----------ccCCceEEEeeCC------CHHH
Confidence 4799999999999999999999875 78889987543210 0 001223333 776 5678
Q ss_pred HHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC---CcccccccCCCCC
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR---KNIEEIIYKAHTH 252 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~---~~i~E~~~~~~~~ 252 (545)
+.++++++|+|||+|+.... ...+...+++|+.++.+++++|.+. ++++||++||.++++.. .+++|.....|.
T Consensus 58 l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~- 135 (328)
T TIGR03466 58 LRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEA-GVERVVYTSSVATLGVRGDGTPADETTPSSLD- 135 (328)
T ss_pred HHHHHhCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEechhhcCcCCCCCCcCccCCCCcc-
Confidence 88889999999999986532 3345778899999999999999986 78999999999988742 133443221110
Q ss_pred HHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 253 YSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
...+.|+.+|..+|+++.++. .+++++++||+.+||++.... ...
T Consensus 136 --------------------------~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~-------~~~ 182 (328)
T TIGR03466 136 --------------------------DMIGHYKRSKFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKP-------TPT 182 (328)
T ss_pred --------------------------cccChHHHHHHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCC-------CcH
Confidence 112579999999999999876 589999999999999854311 111
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhc
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~ 410 (545)
..++.....+..+... +...+++|++|+|++++.++..... +..|+++ + +++++.|+++.+.+.+|
T Consensus 183 ~~~~~~~~~~~~~~~~---~~~~~~i~v~D~a~a~~~~~~~~~~--------~~~~~~~-~--~~~s~~e~~~~i~~~~g 248 (328)
T TIGR03466 183 GRIIVDFLNGKMPAYV---DTGLNLVHVDDVAEGHLLALERGRI--------GERYILG-G--ENLTLKQILDKLAEITG 248 (328)
T ss_pred HHHHHHHHcCCCceee---CCCcceEEHHHHHHHHHHHHhCCCC--------CceEEec-C--CCcCHHHHHHHHHHHhC
Confidence 2233333343333222 3446899999999999998876433 6788875 4 68999999999999988
Q ss_pred cc
Q psy16252 411 KI 412 (545)
Q Consensus 411 ~~ 412 (545)
+.
T Consensus 249 ~~ 250 (328)
T TIGR03466 249 RP 250 (328)
T ss_pred CC
Confidence 64
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-26 Score=229.32 Aligned_cols=258 Identities=18% Similarity=0.176 Sum_probs=170.5
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh-hcCCCccc-CCCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK-FTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~-~~~~~~~~-Dl~~~~lgl~ 173 (545)
++|+|||||||||||++++++|++.|+ +|+++.|+... ...+. ..+. ....+++. |+. +
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~---~V~~~~r~~~~---~~~~~-------~~~~~~~~~~~~~~Dl~------~ 69 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY---TVHATLRDPAK---SLHLL-------SKWKEGDRLRLFRADLQ------E 69 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCChHH---HHHHH-------HhhccCCeEEEEECCCC------C
Confidence 468999999999999999999999875 68888886421 11111 1110 11233444 777 5
Q ss_pred HHHHHHHhcCccEEEEccccccch-----HHHHH-----HHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFD-----EELKE-----AIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--- 240 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~-----~~~~~-----~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--- 240 (545)
.+.+.++++++|+|||+||..... .+.+. .+++|+.|+.+++++|.+..++++||++||.++++...
T Consensus 70 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~ 149 (353)
T PLN02896 70 EGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNG 149 (353)
T ss_pred HHHHHHHHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCC
Confidence 677888888999999999975432 12333 34556799999999998874588999999999887421
Q ss_pred ----cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeec
Q psy16252 241 ----NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVIS 314 (545)
Q Consensus 241 ----~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g 314 (545)
+++|+. +.|. +...+ .....+.|+.||+++|+++..+. .+++++++||++|||
T Consensus 150 ~~~~~~~E~~-~~p~------------------~~~~~--~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG 208 (353)
T PLN02896 150 RWRAVVDETC-QTPI------------------DHVWN--TKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAG 208 (353)
T ss_pred CCCCccCccc-CCcH------------------HHhhc--cCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccC
Confidence 233321 1111 00000 00112479999999999999876 689999999999999
Q ss_pred cCCCCCCCCccCccchHHHHHHHhcCceeEE--ecC---CCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 315 TWKEPIPGWIDNLYGPTGLVTGAQAGVVRTF--LVD---PDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~--~~~---~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
++..+. +......+.....|....+ .+. .....+||||+|+|++++.++..... +++|++
T Consensus 209 p~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~~~~--------~~~~~~- 273 (353)
T PLN02896 209 PFLTPS------VPSSIQVLLSPITGDSKLFSILSAVNSRMGSIALVHIEDICDAHIFLMEQTKA--------EGRYIC- 273 (353)
T ss_pred CCcCCC------CCchHHHHHHHhcCCccccccccccccccCceeEEeHHHHHHHHHHHHhCCCc--------CccEEe-
Confidence 865431 1111111111223322111 111 11246999999999999999876433 457865
Q ss_pred cCCCCcccHHHHHHHHHHhhc
Q psy16252 390 NSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 390 ~~~~~~~t~~el~~~l~~~~~ 410 (545)
++ .++++.|+++.+.+.++
T Consensus 274 ~~--~~~s~~el~~~i~~~~~ 292 (353)
T PLN02896 274 CV--DSYDMSELINHLSKEYP 292 (353)
T ss_pred cC--CCCCHHHHHHHHHHhCC
Confidence 44 68999999999998875
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=224.23 Aligned_cols=261 Identities=14% Similarity=0.092 Sum_probs=177.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.|+ +|+++.|...... ..+... ..+......++. |+. +.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~Dl~------d~~~ 64 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVVILDNLCNSKR--SVLPVI-----ERLGGKHPTFVEGDIR------NEAL 64 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC---eEEEEecCCCchH--hHHHHH-----HHhcCCCceEEEccCC------CHHH
Confidence 5799999999999999999999876 5777766432211 111110 001111223333 776 5566
Q ss_pred HHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCC
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKA 249 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~ 249 (545)
+..+++ ++|+|||+|+..... ......+++|+.++.+++++|++. ++++||++||.++++... +++|+...
T Consensus 65 ~~~~~~~~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~yg~~~~~~~~E~~~~- 142 (338)
T PRK10675 65 LTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNLIFSSSATVYGDQPKIPYVESFPT- 142 (338)
T ss_pred HHHHHhcCCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHhhCCCCCCccccccCC-
Confidence 777765 689999999876432 234567899999999999999987 789999999998887532 34443211
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
....+.|+.+|..+|+++++++ .+++++++|++.+||+.....-|-...
T Consensus 143 ----------------------------~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~ 194 (338)
T PRK10675 143 ----------------------------GTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194 (338)
T ss_pred ----------------------------CCCCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCC
Confidence 0112689999999999999875 479999999999999753322110000
Q ss_pred c--cchHHHHHHHhcCce--eEEec------CCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcc
Q psy16252 327 L--YGPTGLVTGAQAGVV--RTFLV------DPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPL 396 (545)
Q Consensus 327 ~--~~~~~~~~~~~~g~~--~~~~~------~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~ 396 (545)
. ......+..+..+.. ..+++ ++.+.++++||+|+|++++.++..... ...+++||++++ +++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~~~~~~~~~~~~-----~~~~~~~ni~~~--~~~ 267 (338)
T PRK10675 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLAN-----KPGVHIYNLGAG--VGS 267 (338)
T ss_pred CChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEHHHHHHHHHHHHHhhhc-----cCCCceEEecCC--Cce
Confidence 0 011223333333321 11222 467789999999999999998865211 013579999988 899
Q ss_pred cHHHHHHHHHHhhcc
Q psy16252 397 TWGEFITKSLKEGVK 411 (545)
Q Consensus 397 t~~el~~~l~~~~~~ 411 (545)
|+.|+++.+.+..++
T Consensus 268 s~~e~~~~i~~~~g~ 282 (338)
T PRK10675 268 SVLDVVNAFSKACGK 282 (338)
T ss_pred eHHHHHHHHHHHhCC
Confidence 999999999999876
|
|
| >KOG1429|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=209.94 Aligned_cols=250 Identities=18% Similarity=0.132 Sum_probs=188.1
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+++|+||||.||||+||+++|+..|| .|+++..-..+.. ..+..+.. ....+.+. |+.
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh---~VIa~Dn~ftg~k--~n~~~~~~-------~~~fel~~hdv~-------- 85 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGH---EVIALDNYFTGRK--ENLEHWIG-------HPNFELIRHDVV-------- 85 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCC---eEEEEecccccch--hhcchhcc-------CcceeEEEeech--------
Confidence 358999999999999999999999876 6777765433211 11111111 11111111 333
Q ss_pred HHHHHHhcCccEEEEcccccc---chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR---FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKA 249 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~ 249 (545)
..++.++|.|||+|+..+ +..++-..+.+|+.||.+++.+|++. + +||++.||+-|||+.. +..|..+..
T Consensus 86 ---~pl~~evD~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv-~-aR~l~aSTseVYgdp~~hpq~e~ywg~ 160 (350)
T KOG1429|consen 86 ---EPLLKEVDQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRV-G-ARFLLASTSEVYGDPLVHPQVETYWGN 160 (350)
T ss_pred ---hHHHHHhhhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHh-C-ceEEEeecccccCCcccCCCccccccc
Confidence 457789999999999754 45555667789999999999999997 4 8999999999999843 222222111
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCc
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNL 327 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~ 327 (545)
..+. +-...|...|.++|.++..+. .|+.+.|.|+-++|||.-. |.++
T Consensus 161 -------------------vnpi------gpr~cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~----~~dg- 210 (350)
T KOG1429|consen 161 -------------------VNPI------GPRSCYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMH----MDDG- 210 (350)
T ss_pred -------------------cCcC------CchhhhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccc----cCCC-
Confidence 0000 112689999999999999987 8999999999999998543 4443
Q ss_pred cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHH
Q psy16252 328 YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLK 407 (545)
Q Consensus 328 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~ 407 (545)
...+.++.++..+....+++++.+.++|.+|+|++++++.++.++.. .-+|++++ +.+|+.|+++++.+
T Consensus 211 rvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s~~~---------~pvNiGnp--~e~Tm~elAemv~~ 279 (350)
T KOG1429|consen 211 RVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMESDYR---------GPVNIGNP--GEFTMLELAEMVKE 279 (350)
T ss_pred hhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcCCCc---------CCcccCCc--cceeHHHHHHHHHH
Confidence 23456677778888888999999999999999999999999998876 45999999 89999999999999
Q ss_pred hhcc
Q psy16252 408 EGVK 411 (545)
Q Consensus 408 ~~~~ 411 (545)
..+.
T Consensus 280 ~~~~ 283 (350)
T KOG1429|consen 280 LIGP 283 (350)
T ss_pred HcCC
Confidence 8743
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=218.91 Aligned_cols=252 Identities=13% Similarity=0.099 Sum_probs=172.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh--hcCCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK--FTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~--~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|||||||||++++++|+++|+ +|++++|+.......+.+. .+. ..+.+++. |++ +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~---~V~~~~R~~~~~~~~~~~~--------~l~~~~~~~~~~~~Dl~------d 68 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY---TVHAAVQKNGETEIEKEIR--------GLSCEEERLKVFDVDPL------D 68 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEEcCchhhhHHHHHH--------hcccCCCceEEEEecCC------C
Confidence 57899999999999999999999976 6888888643211111111 111 11233444 887 5
Q ss_pred HHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC--C-----ccccc
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR--K-----NIEEI 245 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~--~-----~i~E~ 245 (545)
.+.+..++.++|.|+|+++.... ....+..+++|+.||.+++++|.+..++++||++||..++... . .++|+
T Consensus 69 ~~~~~~~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~ 148 (297)
T PLN02583 69 YHSILDALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDER 148 (297)
T ss_pred HHHHHHHHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcc
Confidence 67788889999999998765432 2234678899999999999999886468999999998764321 0 12232
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
.+..+ .........|+.||.++|++++.+. .+++++++||+.|||+...+..
T Consensus 149 ~~~~~------------------------~~~~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~-- 202 (297)
T PLN02583 149 SWSDQ------------------------NFCRKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN-- 202 (297)
T ss_pred cCCCH------------------------HHHhhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch--
Confidence 11000 0000111369999999999998765 6899999999999998543210
Q ss_pred ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHH
Q psy16252 324 IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFIT 403 (545)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~ 403 (545)
. ...+.... .+....++|+|+|||++++.++..+.. ++.|+++++ +...+.++.+
T Consensus 203 --------~----~~~~~~~~---~~~~~~~~v~V~Dva~a~~~al~~~~~--------~~r~~~~~~--~~~~~~~~~~ 257 (297)
T PLN02583 203 --------P----YLKGAAQM---YENGVLVTVDVNFLVDAHIRAFEDVSS--------YGRYLCFNH--IVNTEEDAVK 257 (297)
T ss_pred --------h----hhcCCccc---CcccCcceEEHHHHHHHHHHHhcCccc--------CCcEEEecC--CCccHHHHHH
Confidence 1 11222111 123456799999999999999986655 457999986 4455788999
Q ss_pred HHHHhhcccCCCC
Q psy16252 404 KSLKEGVKIPSSQ 416 (545)
Q Consensus 404 ~l~~~~~~~~~~~ 416 (545)
++.+.+...|.+.
T Consensus 258 ~~~~~~p~~~~~~ 270 (297)
T PLN02583 258 LAQMLSPLIPSPP 270 (297)
T ss_pred HHHHhCCCCCCCC
Confidence 9999877765543
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=221.78 Aligned_cols=234 Identities=21% Similarity=0.231 Sum_probs=169.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|||||||||||++|+++|++.|. ..+|+++.|.... ...+.. .+......++. |++ +
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~-~~~V~~~~r~~~~---~~~~~~-------~~~~~~~~~v~~Dl~------d 64 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYN-PKKIIIYSRDELK---QWEMQQ-------KFPAPCLRFFIGDVR------D 64 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCC-CcEEEEEcCChhH---HHHHHH-------HhCCCcEEEEEccCC------C
Confidence 4579999999999999999999999852 3478888876321 111111 11111233444 887 6
Q ss_pred HHHHHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCC
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAH 250 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~ 250 (545)
.+.+.++++++|+|||+||.... ..+....+++|+.|+.+++++|.+. ++++||++||.....+
T Consensus 65 ~~~l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~~~iV~~SS~~~~~p------------ 131 (324)
T TIGR03589 65 KERLTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GVKRVVALSTDKAANP------------ 131 (324)
T ss_pred HHHHHHHHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCCC------------
Confidence 77888888999999999997532 2234578899999999999999986 7889999999643211
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCCCCCCcc
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
.+.|+.||+.+|+++..+. .+++++++|||+|||+...
T Consensus 132 ------------------------------~~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~------- 174 (324)
T TIGR03589 132 ------------------------------INLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS------- 174 (324)
T ss_pred ------------------------------CCHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCC-------
Confidence 1679999999999997642 6899999999999997421
Q ss_pred CccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHH
Q psy16252 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKS 405 (545)
Q Consensus 326 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l 405 (545)
+ ...+...+..|.......+++..++|++|+|+|++++.++..... +++|+ .++ ..+++.|+++.+
T Consensus 175 -~--i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~a~a~~~al~~~~~--------~~~~~-~~~--~~~sv~el~~~i 240 (324)
T TIGR03589 175 -V--VPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLERMLG--------GEIFV-PKI--PSMKITDLAEAM 240 (324)
T ss_pred -c--HHHHHHHHHhCCCCeeeCCCCceEeeEEHHHHHHHHHHHHhhCCC--------CCEEc-cCC--CcEEHHHHHHHH
Confidence 1 122333333443111224677888999999999999999876433 57885 444 569999999999
Q ss_pred HHhh
Q psy16252 406 LKEG 409 (545)
Q Consensus 406 ~~~~ 409 (545)
.+..
T Consensus 241 ~~~~ 244 (324)
T TIGR03589 241 APEC 244 (324)
T ss_pred HhhC
Confidence 8864
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-25 Score=217.38 Aligned_cols=228 Identities=22% Similarity=0.185 Sum_probs=159.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+||||||+|+||++|.+.|.+.|+ .|+++.|..- |+. +.+.+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~---~v~~~~r~~~----------------------------dl~------d~~~~ 43 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY---EVIATSRSDL----------------------------DLT------DPEAV 43 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE---EEEEESTTCS-----------------------------TT------SHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC---EEEEeCchhc----------------------------CCC------CHHHH
Confidence 7899999999999999999998754 5777766521 665 56677
Q ss_pred HHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 178 RLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 178 ~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
.++++ .+|+||||||..+.. .+++..+++|+.++.+|+++|... + .++||+||.+|+.... +..|+..+.|
T Consensus 44 ~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~-~-~~li~~STd~VFdG~~~~~y~E~d~~~P 121 (286)
T PF04321_consen 44 AKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER-G-ARLIHISTDYVFDGDKGGPYTEDDPPNP 121 (286)
T ss_dssp HHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC-T--EEEEEEEGGGS-SSTSSSB-TTS----
T ss_pred HHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc-C-CcEEEeeccEEEcCCcccccccCCCCCC
Confidence 77766 579999999987543 456789999999999999999986 4 4899999999997643 4566655544
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
. +.||.+|+.+|+.+++..+ +..|+|++.+||.... ++ .
T Consensus 122 ~------------------------------~~YG~~K~~~E~~v~~~~~--~~~IlR~~~~~g~~~~-------~~--~ 160 (286)
T PF04321_consen 122 L------------------------------NVYGRSKLEGEQAVRAACP--NALILRTSWVYGPSGR-------NF--L 160 (286)
T ss_dssp S------------------------------SHHHHHHHHHHHHHHHH-S--SEEEEEE-SEESSSSS-------SH--H
T ss_pred C------------------------------CHHHHHHHHHHHHHHHhcC--CEEEEecceecccCCC-------ch--h
Confidence 3 8899999999999998653 8999999999998322 11 2
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhc
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~ 410 (545)
..++..+..|....+ ..+...+.++++|+|++++.++..... .....++||++++ +.+|+.|+++.+.+.++
T Consensus 161 ~~~~~~~~~~~~i~~--~~d~~~~p~~~~dlA~~i~~l~~~~~~----~~~~~Giyh~~~~--~~~S~~e~~~~i~~~~~ 232 (286)
T PF04321_consen 161 RWLLRRLRQGEPIKL--FDDQYRSPTYVDDLARVILELIEKNLS----GASPWGIYHLSGP--ERVSRYEFAEAIAKILG 232 (286)
T ss_dssp HHHHHHHHCTSEEEE--ESSCEE--EEHHHHHHHHHHHHHHHHH-----GGG-EEEE---B--S-EEHHHHHHHHHHHHT
T ss_pred hhHHHHHhcCCeeEe--eCCceeCCEEHHHHHHHHHHHHHhccc----ccccceeEEEecC--cccCHHHHHHHHHHHhC
Confidence 344555555554433 457788999999999999999887642 0112589999999 89999999999999988
Q ss_pred ccC
Q psy16252 411 KIP 413 (545)
Q Consensus 411 ~~~ 413 (545)
..+
T Consensus 233 ~~~ 235 (286)
T PF04321_consen 233 LDP 235 (286)
T ss_dssp HCT
T ss_pred CCC
Confidence 754
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=211.56 Aligned_cols=235 Identities=20% Similarity=0.211 Sum_probs=166.9
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCc-----ccCCCCCCCCCCH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTS-----KESAQAPDLGLSP 174 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~-----~~Dl~~~~lgl~~ 174 (545)
||||||+|.||+.|+++|++.+| ++|+++.|++.. +..+...+.......+..+ +.|+. |.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p--~~lil~d~~E~~------l~~l~~~l~~~~~~~~v~~~~~~vigDvr------d~ 66 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP--KKLILFDRDENK------LYELERELRSRFPDPKVRFEIVPVIGDVR------DK 66 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB---SEEEEEES-HHH------HHHHHHHCHHHC--TTCEEEEE--CTSCC------HH
T ss_pred CEEEccccHHHHHHHHHHHhcCC--CeEEEeCCChhH------HHHHHHHHhhcccccCcccccCceeeccc------CH
Confidence 79999999999999999999854 689999997432 2221111111111112221 11777 77
Q ss_pred HHHHHHhc--CccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCC
Q psy16252 175 DDKRLVTS--KVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKA 249 (545)
Q Consensus 175 ~~~~~l~~--~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~ 249 (545)
+.+..+++ ++|+|||+||.-+. ..++.+++++||.||.|++++|.+. ++++||++||.-+..+.
T Consensus 67 ~~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~Pt---------- 135 (293)
T PF02719_consen 67 ERLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVNPT---------- 135 (293)
T ss_dssp HHHHHHTT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS------------
T ss_pred HHHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCCCC----------
Confidence 88999999 99999999997543 3456788999999999999999997 89999999999665321
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--c---CCCEEEEccceeeccCCCCCCCCc
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--Q---FFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~---~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
|.||.||+++|+++..++ . +.+++++|+|+|.|+..+-+
T Consensus 136 --------------------------------nvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSVi---- 179 (293)
T PF02719_consen 136 --------------------------------NVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGSVI---- 179 (293)
T ss_dssp --------------------------------SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTSCH----
T ss_pred --------------------------------cHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCcHH----
Confidence 889999999999999987 2 57899999999999876543
Q ss_pred cCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHH
Q psy16252 325 DNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITK 404 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~ 404 (545)
..+..++..|.+.+ ..+++..+-|+.+++.++.++.++..... +++|.+-.+ +++++.|+++.
T Consensus 180 ------p~F~~Qi~~g~PlT-vT~p~mtRffmti~EAv~Lvl~a~~~~~~--------geifvl~mg--~~v~I~dlA~~ 242 (293)
T PF02719_consen 180 ------PLFKKQIKNGGPLT-VTDPDMTRFFMTIEEAVQLVLQAAALAKG--------GEIFVLDMG--EPVKILDLAEA 242 (293)
T ss_dssp ------HHHHHHHHTTSSEE-ECETT-EEEEE-HHHHHHHHHHHHHH--T--------TEEEEE-----TCEECCCHHHH
T ss_pred ------HHHHHHHHcCCcce-eCCCCcEEEEecHHHHHHHHHHHHhhCCC--------CcEEEecCC--CCcCHHHHHHH
Confidence 34556666675544 46788999999999999999999877665 789999988 89999999999
Q ss_pred HHHhhccc
Q psy16252 405 SLKEGVKI 412 (545)
Q Consensus 405 l~~~~~~~ 412 (545)
+.+..|..
T Consensus 243 ~i~~~g~~ 250 (293)
T PF02719_consen 243 MIELSGLE 250 (293)
T ss_dssp HHHHTT-E
T ss_pred HHhhcccc
Confidence 99987743
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-25 Score=224.91 Aligned_cols=260 Identities=15% Similarity=0.158 Sum_probs=173.7
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh--hcCCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK--FTCSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~--~~~~~~~~-Dl~~~~l 170 (545)
-..+|+|||||||||||++|+++|++.|+ +|++++|+... .+.+.... .+.... .....++. |++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~---~V~~~~r~~~~---~~~l~~l~--~~~~~~~~~~~~~~v~~Dl~---- 117 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY---SVRIAVDTQED---KEKLREME--MFGEMGRSNDGIWTVMANLT---- 117 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHHHh--hhccccccCCceEEEEcCCC----
Confidence 35689999999999999999999999976 57777776321 11111100 000000 01123334 777
Q ss_pred CCCHHHHHHHhcCccEEEEccccccchH---HHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccc--cccCC------
Q psy16252 171 GLSPDDKRLVTSKVNLVFHCAATLRFDE---ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAF--SNSYR------ 239 (545)
Q Consensus 171 gl~~~~~~~l~~~vd~Vih~Aa~~~~~~---~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~--v~~~~------ 239 (545)
+.+.+.++++++|.|||+|+.+.... ......++|+.++.+++++|++..++++|||+||.. +++..
T Consensus 118 --d~~~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~ 195 (367)
T PLN02686 118 --EPESLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLP 195 (367)
T ss_pred --CHHHHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCC
Confidence 66778888999999999999764322 124556889999999999999865799999999974 44421
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCC
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~ 317 (545)
..+.|+... ++. ......+.|+.||..+|++++.+. .+++++++||+.|||+..
T Consensus 196 ~~i~E~~~~----------------~~~--------~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~ 251 (367)
T PLN02686 196 PVIDEESWS----------------DES--------FCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGF 251 (367)
T ss_pred cccCCCCCC----------------Chh--------hcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCC
Confidence 112232110 000 001112579999999999998765 689999999999999854
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCccc
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLT 397 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t 397 (545)
... + +..++ .+..|... +++ +...++++|+|||++++.++..... ...+++| ++++ .+++
T Consensus 252 ~~~-----~---~~~~~-~~~~g~~~-~~g--~g~~~~v~V~Dva~A~~~al~~~~~-----~~~~~~y-i~~g--~~~s 311 (367)
T PLN02686 252 FRR-----N---STATI-AYLKGAQE-MLA--DGLLATADVERLAEAHVCVYEAMGN-----KTAFGRY-ICFD--HVVS 311 (367)
T ss_pred CCC-----C---ChhHH-HHhcCCCc-cCC--CCCcCeEEHHHHHHHHHHHHhccCC-----CCCCCcE-EEeC--CCcc
Confidence 321 0 11122 33344433 333 3345799999999999999875311 0135688 7776 7899
Q ss_pred HHHHHHHHHHhhcc
Q psy16252 398 WGEFITKSLKEGVK 411 (545)
Q Consensus 398 ~~el~~~l~~~~~~ 411 (545)
+.|+++.+.+.++.
T Consensus 312 ~~e~~~~i~~~~g~ 325 (367)
T PLN02686 312 REDEAEELARQIGL 325 (367)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999875
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=202.36 Aligned_cols=222 Identities=23% Similarity=0.221 Sum_probs=176.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|||||++|.||..|++.|. .+ ..|+++.|+.- |++ +++.+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~---~~v~a~~~~~~----------------------------Dit------d~~~v 42 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GE---FEVIATDRAEL----------------------------DIT------DPDAV 42 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CC---ceEEeccCccc----------------------------ccc------ChHHH
Confidence 359999999999999999997 32 26888877641 777 55667
Q ss_pred HHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 178 RLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 178 ~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
.++++ .+|+|||+||.+..+ ...+.++.+|..|+.+++++|++. + .++||+||.||+.... +..|+..+.|
T Consensus 43 ~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~-g-a~lVhiSTDyVFDG~~~~~Y~E~D~~~P 120 (281)
T COG1091 43 LEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV-G-ARLVHISTDYVFDGEKGGPYKETDTPNP 120 (281)
T ss_pred HHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh-C-CeEEEeecceEecCCCCCCCCCCCCCCC
Confidence 77777 569999999998654 335788999999999999999997 4 4799999999987654 5667766666
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
. |.||+||+++|..++++. -...|+|.+.+||.... ||.
T Consensus 121 ~------------------------------nvYG~sKl~GE~~v~~~~--~~~~I~Rtswv~g~~g~-------nFv-- 159 (281)
T COG1091 121 L------------------------------NVYGRSKLAGEEAVRAAG--PRHLILRTSWVYGEYGN-------NFV-- 159 (281)
T ss_pred h------------------------------hhhhHHHHHHHHHHHHhC--CCEEEEEeeeeecCCCC-------CHH--
Confidence 5 789999999999999964 67899999999998542 221
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhc
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~ 410 (545)
.-|+.....|.. +..-.++..+.+++.|+|+++..++..... +++||+++. ..+||-|+++.+.+..+
T Consensus 160 ~tml~la~~~~~--l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~~--------~~~yH~~~~--g~~Swydfa~~I~~~~~ 227 (281)
T COG1091 160 KTMLRLAKEGKE--LKVVDDQYGSPTYTEDLADAILELLEKEKE--------GGVYHLVNS--GECSWYEFAKAIFEEAG 227 (281)
T ss_pred HHHHHHhhcCCc--eEEECCeeeCCccHHHHHHHHHHHHhcccc--------CcEEEEeCC--CcccHHHHHHHHHHHhC
Confidence 234444444433 234468888999999999999998887765 569999998 67899999999999987
Q ss_pred cc
Q psy16252 411 KI 412 (545)
Q Consensus 411 ~~ 412 (545)
..
T Consensus 228 ~~ 229 (281)
T COG1091 228 VD 229 (281)
T ss_pred CC
Confidence 54
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=208.56 Aligned_cols=233 Identities=15% Similarity=0.093 Sum_probs=161.7
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKRL 179 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~~~ 179 (545)
|||||||||||+++++.|++.|+ +|++++|+.......... .+.|+.. .....
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~-----------------~~~~~~~-------~~~~~ 53 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH---EVTILTRSPPAGANTKWE-----------------GYKPWAP-------LAESE 53 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC---EEEEEeCCCCCCCcccce-----------------eeecccc-------cchhh
Confidence 69999999999999999999865 799999986543210000 0002211 22345
Q ss_pred HhcCccEEEEccccccc----h-HHHHHHHHHhHHHHHHHHHHHHHccCC--ceEEEEeccccccCCC--cccccccCCC
Q psy16252 180 VTSKVNLVFHCAATLRF----D-EELKEAIRTNMCATQTMLDLAKQCKNL--KMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 180 l~~~vd~Vih~Aa~~~~----~-~~~~~~~~~Nv~gt~~ll~~a~~~~~~--~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
.+.++|+|||+||.... . .....++++|+.++.+++++|++. ++ ..|+++||.++++... .++|+..+.+
T Consensus 54 ~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~~~ 132 (292)
T TIGR01777 54 ALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA-EQKPKVFISASAVGYYGTSEDRVFTEEDSPAG 132 (292)
T ss_pred hcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc-CCCceEEEEeeeEEEeCCCCCCCcCcccCCCC
Confidence 56789999999997542 1 234667899999999999999997 54 4677788877777532 3444321111
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCCCCCCCCccCccc
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWKEPIPGWIDNLYG 329 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~ 329 (545)
.+.|+..+...|..+..+. .+++++|+||+.|||+... +.
T Consensus 133 ------------------------------~~~~~~~~~~~e~~~~~~~~~~~~~~ilR~~~v~G~~~~----~~----- 173 (292)
T TIGR01777 133 ------------------------------DDFLAELCRDWEEAAQAAEDLGTRVVLLRTGIVLGPKGG----AL----- 173 (292)
T ss_pred ------------------------------CChHHHHHHHHHHHhhhchhcCCceEEEeeeeEECCCcc----hh-----
Confidence 1345566666777766544 6899999999999997421 11
Q ss_pred hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhh
Q psy16252 330 PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEG 409 (545)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~ 409 (545)
..+........ ...+++++...++|+++|+|+++..++..+.. .++||++++ +++|+.|+++.+.+..
T Consensus 174 -~~~~~~~~~~~-~~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~~--------~g~~~~~~~--~~~s~~di~~~i~~~~ 241 (292)
T TIGR01777 174 -AKMLPPFRLGL-GGPLGSGRQWFSWIHIEDLVQLILFALENASI--------SGPVNATAP--EPVRNKEFAKALARAL 241 (292)
T ss_pred -HHHHHHHhcCc-ccccCCCCcccccEeHHHHHHHHHHHhcCccc--------CCceEecCC--CccCHHHHHHHHHHHh
Confidence 11111111111 11246778899999999999999999876543 569999998 8999999999999998
Q ss_pred cc
Q psy16252 410 VK 411 (545)
Q Consensus 410 ~~ 411 (545)
+.
T Consensus 242 g~ 243 (292)
T TIGR01777 242 HR 243 (292)
T ss_pred CC
Confidence 76
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=216.83 Aligned_cols=236 Identities=17% Similarity=0.166 Sum_probs=173.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
..+++|+|||||||||++++++|+++|+ .|++++|+............. .. .....+++. |++ +
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~---~V~~l~R~~~~~~~~~~~~~~----~~--~~~~v~~v~~Dl~------d 122 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY---NVVAVAREKSGIRGKNGKEDT----KK--ELPGAEVVFGDVT------D 122 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEEechhhccccchhhHH----hh--hcCCceEEEeeCC------C
Confidence 4578999999999999999999999876 688999976432110000000 00 001334444 887 6
Q ss_pred HHHHHHHhc----CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCC
Q psy16252 174 PDDKRLVTS----KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKA 249 (545)
Q Consensus 174 ~~~~~~l~~----~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~ 249 (545)
.+.+..+++ ++|+||||++.... .....+++|+.++.+++++|++. ++++||++||.+++.+.
T Consensus 123 ~~~l~~~~~~~~~~~D~Vi~~aa~~~~--~~~~~~~vn~~~~~~ll~aa~~~-gv~r~V~iSS~~v~~p~---------- 189 (390)
T PLN02657 123 ADSLRKVLFSEGDPVDVVVSCLASRTG--GVKDSWKIDYQATKNSLDAGREV-GAKHFVLLSAICVQKPL---------- 189 (390)
T ss_pred HHHHHHHHHHhCCCCcEEEECCccCCC--CCccchhhHHHHHHHHHHHHHHc-CCCEEEEEeeccccCcc----------
Confidence 677888777 59999999885321 12345688999999999999987 88999999999765321
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccc
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYG 329 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~ 329 (545)
+.|..+|..+|+.+.....+++++|+||+.+||..
T Consensus 190 --------------------------------~~~~~sK~~~E~~l~~~~~gl~~tIlRp~~~~~~~------------- 224 (390)
T PLN02657 190 --------------------------------LEFQRAKLKFEAELQALDSDFTYSIVRPTAFFKSL------------- 224 (390)
T ss_pred --------------------------------hHHHHHHHHHHHHHHhccCCCCEEEEccHHHhccc-------------
Confidence 45889999999998763378999999999998741
Q ss_pred hHHHHHHHhcCceeEEecCCCCc-ccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 330 PTGLVTGAQAGVVRTFLVDPDVK-ADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~~~-~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
..++..+..|....++++++.. .++|+++|+|.+++.++..+.. .+++||++++. +.+|+.|+++.+.+.
T Consensus 225 -~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~~-------~~~~~~Iggp~-~~~S~~Eia~~l~~~ 295 (390)
T PLN02657 225 -GGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCVLDESK-------INKVLPIGGPG-KALTPLEQGEMLFRI 295 (390)
T ss_pred -HHHHHhhccCCceEEecCCcccccCceeHHHHHHHHHHHHhCccc-------cCCEEEcCCCC-cccCHHHHHHHHHHH
Confidence 1233344455555566777654 4689999999999999865543 47899998751 479999999999999
Q ss_pred hccc
Q psy16252 409 GVKI 412 (545)
Q Consensus 409 ~~~~ 412 (545)
+|+.
T Consensus 296 lG~~ 299 (390)
T PLN02657 296 LGKE 299 (390)
T ss_pred hCCC
Confidence 8874
|
|
| >KOG1371|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=200.95 Aligned_cols=262 Identities=20% Similarity=0.164 Sum_probs=190.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++||||||.||||+|.+-+|++.|++|..|.-+.|.- .....|++.+... ...+.+.. |++ |.+
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~--~~sl~r~~~l~~~------~~~v~f~~~Dl~------D~~ 67 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSY--LESLKRVRQLLGE------GKSVFFVEGDLN------DAE 67 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccc--hhHHHHHHHhcCC------CCceEEEEeccC------CHH
Confidence 58999999999999999999999998654444444443 2334444443221 12344444 888 788
Q ss_pred HHHHHhc--CccEEEEccccccchHH---HHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 176 DKRLVTS--KVNLVFHCAATLRFDEE---LKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 176 ~~~~l~~--~vd~Vih~Aa~~~~~~~---~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
.++++++ ..|.|+|.||.-...++ +-.++..|+.||.+|++.+++. +++.+|+.||+.+||... ++.|+...
T Consensus 68 ~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~-~~~~~V~sssatvYG~p~~ip~te~~~t 146 (343)
T KOG1371|consen 68 ALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAH-NVKALVFSSSATVYGLPTKVPITEEDPT 146 (343)
T ss_pred HHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHc-CCceEEEecceeeecCcceeeccCcCCC
Confidence 8999987 57999999998654433 3567899999999999999998 699999999999999865 45554321
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCC----
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPG---- 322 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g---- 322 (545)
. ...+.|+.||...|.++.... .++.++++|..+++|....+.+|
T Consensus 147 ~-----------------------------~p~~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~ 197 (343)
T KOG1371|consen 147 D-----------------------------QPTNPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPL 197 (343)
T ss_pred C-----------------------------CCCCcchhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCc
Confidence 1 011889999999999999887 56999999999999944333322
Q ss_pred -CccCccchHHHHHHHhcCceeE--------EecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCC
Q psy16252 323 -WIDNLYGPTGLVTGAQAGVVRT--------FLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKD 393 (545)
Q Consensus 323 -~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~ 393 (545)
...++. ..+.+...|..+. -..+++...++++|-|.|+.++.++.+... ..+.++||++++
T Consensus 198 ~~~nnl~---p~v~~vaigr~~~l~v~g~d~~t~dgt~vrdyi~v~Dla~~h~~al~k~~~-----~~~~~i~Nlgtg-- 267 (343)
T KOG1371|consen 198 GIPNNLL---PYVFQVAIGRRPNLQVVGRDYTTIDGTIVRDYIHVLDLADGHVAALGKLRG-----AAEFGVYNLGTG-- 267 (343)
T ss_pred cCccccc---ccccchhhcccccceeecCcccccCCCeeecceeeEehHHHHHHHhhcccc-----chheeeEeecCC--
Confidence 222221 1222222222221 123568899999999999999999887653 123469999999
Q ss_pred CcccHHHHHHHHHHhhccc
Q psy16252 394 NPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 394 ~~~t~~el~~~l~~~~~~~ 412 (545)
.+.+..+++..+.+..|..
T Consensus 268 ~g~~V~~lv~a~~k~~g~~ 286 (343)
T KOG1371|consen 268 KGSSVLELVTAFEKALGVK 286 (343)
T ss_pred CCccHHHHHHHHHHHhcCC
Confidence 8999999999999998764
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=206.10 Aligned_cols=215 Identities=20% Similarity=0.170 Sum_probs=148.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.|+|||||||||||++|++.|+++|++ |+...+ |+. +.+.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~---V~~~~~-------------------------------~~~------~~~~ 48 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGID---FHYGSG-------------------------------RLE------NRAS 48 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCE---EEEecC-------------------------------ccC------CHHH
Confidence 489999999999999999999999764 443211 111 1122
Q ss_pred HHHHhc--CccEEEEccccccc------hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--------
Q psy16252 177 KRLVTS--KVNLVFHCAATLRF------DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-------- 240 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~------~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-------- 240 (545)
+...++ ++|+|||+||.... ......++++|+.||.+++++|++. +++ ++++||..+++...
T Consensus 49 v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~-gv~-~v~~sS~~vy~~~~~~p~~~~~ 126 (298)
T PLN02778 49 LEADIDAVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER-GLV-LTNYATGCIFEYDDAHPLGSGI 126 (298)
T ss_pred HHHHHHhcCCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCC-EEEEecceEeCCCCCCCcccCC
Confidence 222222 68999999997632 2345678899999999999999997 776 56667766665321
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCC
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPI 320 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~ 320 (545)
++.|+..+. ...+.|+.||+++|+++..+. +..++|++.++|....
T Consensus 127 ~~~Ee~~p~-----------------------------~~~s~Yg~sK~~~E~~~~~y~---~~~~lr~~~~~~~~~~-- 172 (298)
T PLN02778 127 GFKEEDTPN-----------------------------FTGSFYSKTKAMVEELLKNYE---NVCTLRVRMPISSDLS-- 172 (298)
T ss_pred CCCcCCCCC-----------------------------CCCCchHHHHHHHHHHHHHhh---ccEEeeecccCCcccc--
Confidence 122221111 112789999999999998864 4678898877764211
Q ss_pred CCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHH
Q psy16252 321 PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGE 400 (545)
Q Consensus 321 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~e 400 (545)
....++..+..+......+ .++++++|++++++.++.... .++||++++ .++|+.|
T Consensus 173 --------~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~al~~~l~~~~---------~g~yNigs~--~~iS~~e 228 (298)
T PLN02778 173 --------NPRNFITKITRYEKVVNIP-----NSMTILDELLPISIEMAKRNL---------TGIYNFTNP--GVVSHNE 228 (298)
T ss_pred --------cHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHHHHHHHhCCC---------CCeEEeCCC--CcccHHH
Confidence 1123455555543222211 379999999999999875432 369999998 7999999
Q ss_pred HHHHHHHhhcc
Q psy16252 401 FITKSLKEGVK 411 (545)
Q Consensus 401 l~~~l~~~~~~ 411 (545)
+++.+.+.++.
T Consensus 229 l~~~i~~~~~~ 239 (298)
T PLN02778 229 ILEMYRDYIDP 239 (298)
T ss_pred HHHHHHHHhCC
Confidence 99999999875
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=210.09 Aligned_cols=258 Identities=19% Similarity=0.144 Sum_probs=174.6
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDK 177 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~ 177 (545)
+|||||||||||++++++|++.|+ +|+++.|...... +++.... .....+++. |+. +.+.+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~---~V~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~D~~------~~~~~ 62 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH---EVVVLDNLSNGSP--EALKRGE-------RITRVTFVEGDLR------DRELL 62 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC---eEEEEeCCCccch--hhhhhhc-------cccceEEEECCCC------CHHHH
Confidence 489999999999999999999876 4666655432211 1111100 000122333 776 55667
Q ss_pred HHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 178 RLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 178 ~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
..+++ ++|+|||+||..... ......++.|+.++.+++++|.+. ++++||++||.++++... .++|+....
T Consensus 63 ~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~ss~~~~g~~~~~~~~e~~~~~- 140 (328)
T TIGR01179 63 DRLFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GVKKFIFSSSAAVYGEPSSIPISEDSPLG- 140 (328)
T ss_pred HHHHHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CCCEEEEecchhhcCCCCCCCccccCCCC-
Confidence 77765 699999999976432 233566789999999999999986 788999999998886532 233332111
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeeccCCCCCCCCccC-
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVISTWKEPIPGWIDN- 326 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~~~~~~~g~~~~- 326 (545)
..+.|+.+|+.+|.+++.+. .+++++|+||+.|||+...+..++...
T Consensus 141 -----------------------------~~~~y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~ 191 (328)
T TIGR01179 141 -----------------------------PINPYGRSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPG 191 (328)
T ss_pred -----------------------------CCCchHHHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcc
Confidence 12679999999999998764 689999999999999865443332211
Q ss_pred ccchHHHHHHHhcC--ceeEEe------cCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccH
Q psy16252 327 LYGPTGLVTGAQAG--VVRTFL------VDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTW 398 (545)
Q Consensus 327 ~~~~~~~~~~~~~g--~~~~~~------~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~ 398 (545)
.......+.....+ ....++ .+++...++||++|+|+++..++..... ...+++||++++ +++|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~~-----~~~~~~~n~~~~--~~~s~ 264 (328)
T TIGR01179 192 ITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLN-----GGESHVYNLGYG--QGFSV 264 (328)
T ss_pred cchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhhc-----CCCcceEEcCCC--CcccH
Confidence 11111111122221 111111 2456778999999999999988865321 013689999998 88999
Q ss_pred HHHHHHHHHhhccc
Q psy16252 399 GEFITKSLKEGVKI 412 (545)
Q Consensus 399 ~el~~~l~~~~~~~ 412 (545)
.|+++.+.+.+|+.
T Consensus 265 ~ei~~~~~~~~g~~ 278 (328)
T TIGR01179 265 LEVIEAFKKVSGVD 278 (328)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998763
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=192.29 Aligned_cols=232 Identities=16% Similarity=0.115 Sum_probs=164.9
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKRL 179 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~~~ 179 (545)
|+|||||||||++|+..|.+.|| +|+.++|++..... ++.. -+. ..+.+..
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh---~v~iltR~~~~~~~--~~~~------------------~v~------~~~~~~~ 51 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH---QVTILTRRPPKASQ--NLHP------------------NVT------LWEGLAD 51 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC---eEEEEEcCCcchhh--hcCc------------------ccc------ccchhhh
Confidence 68999999999999999999877 68999998765321 1100 000 1123344
Q ss_pred Hhc-CccEEEEccccc----cchHHH-HHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 180 VTS-KVNLVFHCAATL----RFDEEL-KEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 180 l~~-~vd~Vih~Aa~~----~~~~~~-~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
+.. ++|+|||+||.. +++... +.+.+..+..|+.|.++..++ .+++.||.-|.++.|++.. .++|.. |
T Consensus 52 ~~~~~~DavINLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~---~ 128 (297)
T COG1090 52 ALTLGIDAVINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEES---P 128 (297)
T ss_pred cccCCCCEEEECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCC---C
Confidence 444 799999999975 244444 567899999999999998854 3567888888888888764 455551 1
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCCCCCCCCccCccc
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWKEPIPGWIDNLYG 329 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~ 329 (545)
...+ --++.=...|+...++. .+.+++++|.|+|.|+....++
T Consensus 129 ~g~~----------------------------Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GGaL~-------- 172 (297)
T COG1090 129 PGDD----------------------------FLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGGALG-------- 172 (297)
T ss_pred CCCC----------------------------hHHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCCcchh--------
Confidence 1111 11112223366666665 6899999999999997533211
Q ss_pred hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhh
Q psy16252 330 PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEG 409 (545)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~ 409 (545)
...-......|. -.|+++++++|||+||++++|..++.+... .+.||++.| +|++.+++.+.+.+.+
T Consensus 173 ~m~~~fk~glGG---~~GsGrQ~~SWIhieD~v~~I~fll~~~~l--------sGp~N~taP--~PV~~~~F~~al~r~l 239 (297)
T COG1090 173 KMLPLFKLGLGG---KLGSGRQWFSWIHIEDLVNAILFLLENEQL--------SGPFNLTAP--NPVRNKEFAHALGRAL 239 (297)
T ss_pred hhcchhhhccCC---ccCCCCceeeeeeHHHHHHHHHHHHhCcCC--------CCcccccCC--CcCcHHHHHHHHHHHh
Confidence 111111222222 258999999999999999999999998776 689999999 9999999999999998
Q ss_pred ccc
Q psy16252 410 VKI 412 (545)
Q Consensus 410 ~~~ 412 (545)
.++
T Consensus 240 ~RP 242 (297)
T COG1090 240 HRP 242 (297)
T ss_pred CCC
Confidence 874
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-23 Score=209.10 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=164.3
Q ss_pred CcEEEEe----ccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHh-hHHHHHHhhhhcCCCccc-CCCCCCC
Q psy16252 97 GAEILMT----GATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK-MLDTVAISLKFTCSTSKE-SAQAPDL 170 (545)
Q Consensus 97 ~~~VlIT----GatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~-~~~~~~~~~~~~~~~~~~-Dl~~~~l 170 (545)
.++|||| |||||||++|++.|++.|+ +|++++|+..... .+.. ... .+..+....++++. |+.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~---~V~~l~R~~~~~~---~~~~~~~~-~~~~l~~~~v~~v~~D~~---- 120 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH---EVTLFTRGKEPSQ---KMKKEPFS-RFSELSSAGVKTVWGDPA---- 120 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCC---EEEEEecCCcchh---hhccCchh-hhhHhhhcCceEEEecHH----
Confidence 4789999 9999999999999999976 7899999864311 1100 000 01111112233333 443
Q ss_pred CCCHHHHHHHh--cCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccc
Q psy16252 171 GLSPDDKRLVT--SKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEII 246 (545)
Q Consensus 171 gl~~~~~~~l~--~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~ 246 (545)
++..++ .++|+|||+++. ++.++.+++++|++. ++++|||+||.++++... +..|..
T Consensus 121 -----d~~~~~~~~~~d~Vi~~~~~-------------~~~~~~~ll~aa~~~-gvkr~V~~SS~~vyg~~~~~p~~E~~ 181 (378)
T PLN00016 121 -----DVKSKVAGAGFDVVYDNNGK-------------DLDEVEPVADWAKSP-GLKQFLFCSSAGVYKKSDEPPHVEGD 181 (378)
T ss_pred -----HHHhhhccCCccEEEeCCCC-------------CHHHHHHHHHHHHHc-CCCEEEEEccHhhcCCCCCCCCCCCC
Confidence 233333 478999999763 245688999999987 899999999999987532 122211
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
. ..++. +|+.+|.++++ .+++++|+||+.+||+....
T Consensus 182 ~---------------------------------~~p~~-sK~~~E~~l~~--~~l~~~ilRp~~vyG~~~~~------- 218 (378)
T PLN00016 182 A---------------------------------VKPKA-GHLEVEAYLQK--LGVNWTSFRPQYIYGPGNNK------- 218 (378)
T ss_pred c---------------------------------CCCcc-hHHHHHHHHHH--cCCCeEEEeceeEECCCCCC-------
Confidence 0 01222 89999999876 48999999999999985321
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
.....++..+..|....+++++....+++|++|+|++++.++.++.. .+++||++++ +++|+.|+++.+.
T Consensus 219 -~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~-------~~~~yni~~~--~~~s~~el~~~i~ 288 (378)
T PLN00016 219 -DCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNPKA-------AGQIFNIVSD--RAVTFDGMAKACA 288 (378)
T ss_pred -chHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCccc-------cCCEEEecCC--CccCHHHHHHHHH
Confidence 01122344455565545667788899999999999999999877543 3689999998 8899999999999
Q ss_pred Hhhccc
Q psy16252 407 KEGVKI 412 (545)
Q Consensus 407 ~~~~~~ 412 (545)
+..|..
T Consensus 289 ~~~g~~ 294 (378)
T PLN00016 289 KAAGFP 294 (378)
T ss_pred HHhCCC
Confidence 998864
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=210.44 Aligned_cols=200 Identities=17% Similarity=0.135 Sum_probs=150.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+|||||||||++++++|+++|+ +|+++.|..... +. ....++. |+. +.+.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~---~Vv~l~R~~~~~-----~~------------~~v~~v~gDL~------D~~~ 54 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH---EVVGIARHRPDS-----WP------------SSADFIAADIR------DATA 54 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCchhh-----cc------------cCceEEEeeCC------CHHH
Confidence 5799999999999999999999876 688888864211 00 0122333 776 6677
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHHH
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSEL 256 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~ 256 (545)
+..+++++|+|||+|+.... ..++|+.||.+++++|++. ++++|||+||..
T Consensus 55 l~~al~~vD~VVHlAa~~~~------~~~vNv~GT~nLLeAa~~~-gvkr~V~iSS~~---------------------- 105 (854)
T PRK05865 55 VESAMTGADVVAHCAWVRGR------NDHINIDGTANVLKAMAET-GTGRIVFTSSGH---------------------- 105 (854)
T ss_pred HHHHHhCCCEEEECCCcccc------hHHHHHHHHHHHHHHHHHc-CCCeEEEECCcH----------------------
Confidence 88888999999999986432 4689999999999999987 789999999841
Q ss_pred HHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHHH
Q psy16252 257 LKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTG 336 (545)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~ 336 (545)
|..+|+++.+ .+++++|+||++|||+.. ..++..
T Consensus 106 -------------------------------K~aaE~ll~~--~gl~~vILRp~~VYGP~~-------------~~~i~~ 139 (854)
T PRK05865 106 -------------------------------QPRVEQMLAD--CGLEWVAVRCALIFGRNV-------------DNWVQR 139 (854)
T ss_pred -------------------------------HHHHHHHHHH--cCCCEEEEEeceEeCCCh-------------HHHHHH
Confidence 6778888866 489999999999999731 112222
Q ss_pred HhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 337 AQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 337 ~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
+.. ......+..+..+++|||+|+|++++.++..... .+++||++++ +++|+.|+++.+.+.
T Consensus 140 ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~-------~ggvyNIgsg--~~~Si~EIae~l~~~ 201 (854)
T PRK05865 140 LFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALLDTVI-------DSGPVNLAAP--GELTFRRIAAALGRP 201 (854)
T ss_pred Hhc-CceeccCCCCceEeeeeHHHHHHHHHHHHhCCCc-------CCCeEEEECC--CcccHHHHHHHHhhh
Confidence 211 1111123445677999999999999998764432 3679999998 889999999987754
|
|
| >KOG2865|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-22 Score=180.00 Aligned_cols=241 Identities=17% Similarity=0.173 Sum_probs=180.3
Q ss_pred hhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCCCC
Q psy16252 92 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAPDL 170 (545)
Q Consensus 92 ~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~~l 170 (545)
++-++|-.+-|.|||||+|++++.+|.+.|. +|++--|.++..-..-++-..++. +|... |+.
T Consensus 56 RsS~sGiVaTVFGAtGFlGryvvnklak~GS---QviiPyR~d~~~~r~lkvmGdLGQvl~~~f---------d~~---- 119 (391)
T KOG2865|consen 56 RSSVSGIVATVFGATGFLGRYVVNKLAKMGS---QVIIPYRGDEYDPRHLKVMGDLGQVLFMKF---------DLR---- 119 (391)
T ss_pred cccccceEEEEecccccccHHHHHHHhhcCC---eEEEeccCCccchhheeecccccceeeecc---------CCC----
Confidence 3446678899999999999999999999864 788888987653222222222222 21111 776
Q ss_pred CCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCC
Q psy16252 171 GLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAH 250 (545)
Q Consensus 171 gl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~ 250 (545)
|++++..+.+..++|||+-|.--...++ .+.++|+.+.+.|++.|+.+ ++.+|||+|+..++-.
T Consensus 120 --DedSIr~vvk~sNVVINLIGrd~eTknf-~f~Dvn~~~aerlAricke~-GVerfIhvS~Lganv~------------ 183 (391)
T KOG2865|consen 120 --DEDSIRAVVKHSNVVINLIGRDYETKNF-SFEDVNVHIAERLARICKEA-GVERFIHVSCLGANVK------------ 183 (391)
T ss_pred --CHHHHHHHHHhCcEEEEeeccccccCCc-ccccccchHHHHHHHHHHhh-Chhheeehhhcccccc------------
Confidence 7889999999999999999863222222 35689999999999999998 9999999999875421
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
.++-|-.||.++|..++++.+ ..+|+||+.|||.... +...
T Consensus 184 -----------------------------s~Sr~LrsK~~gE~aVrdafP--eAtIirPa~iyG~eDr--------fln~ 224 (391)
T KOG2865|consen 184 -----------------------------SPSRMLRSKAAGEEAVRDAFP--EATIIRPADIYGTEDR--------FLNY 224 (391)
T ss_pred -----------------------------ChHHHHHhhhhhHHHHHhhCC--cceeechhhhcccchh--------HHHH
Confidence 125699999999999999863 4699999999997432 2222
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhc
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~ 410 (545)
...+..- -|.++.+-.........|+|-|||.+|+.|+.++.. .+++|..++| ...+..|+++++.+...
T Consensus 225 ya~~~rk-~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s-------~Gktye~vGP--~~yql~eLvd~my~~~~ 294 (391)
T KOG2865|consen 225 YASFWRK-FGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDS-------MGKTYEFVGP--DRYQLSELVDIMYDMAR 294 (391)
T ss_pred HHHHHHh-cCceeeecCCcceeeccEEEehHHHHHHHhccCccc-------cCceeeecCC--chhhHHHHHHHHHHHHh
Confidence 2222221 355554434445778899999999999999999876 7999999999 89999999999998866
Q ss_pred ccC
Q psy16252 411 KIP 413 (545)
Q Consensus 411 ~~~ 413 (545)
+.|
T Consensus 295 ~~~ 297 (391)
T KOG2865|consen 295 EWP 297 (391)
T ss_pred hcc
Confidence 543
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=183.11 Aligned_cols=207 Identities=14% Similarity=0.101 Sum_probs=146.3
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDK 177 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~ 177 (545)
+|+||||||++|++++++|++.|+ +|.+++|++..... ...+.+. |+. |++.+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~---~V~~~~R~~~~~~~-----------------~~~~~~~~d~~------d~~~l 54 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV---PFLVASRSSSSSAG-----------------PNEKHVKFDWL------DEDTW 54 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC---cEEEEeCCCccccC-----------------CCCccccccCC------CHHHH
Confidence 489999999999999999999876 58999998653211 0111122 665 66778
Q ss_pred HHHh------cC-ccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCC
Q psy16252 178 RLVT------SK-VNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAH 250 (545)
Q Consensus 178 ~~l~------~~-vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~ 250 (545)
..++ ++ +|.|+|+++..... ...+.+++++|+++ ++++||++||..+....
T Consensus 55 ~~a~~~~~~~~g~~d~v~~~~~~~~~~----------~~~~~~~i~aa~~~-gv~~~V~~Ss~~~~~~~----------- 112 (285)
T TIGR03649 55 DNPFSSDDGMEPEISAVYLVAPPIPDL----------APPMIKFIDFARSK-GVRRFVLLSASIIEKGG----------- 112 (285)
T ss_pred HHHHhcccCcCCceeEEEEeCCCCCCh----------hHHHHHHHHHHHHc-CCCEEEEeeccccCCCC-----------
Confidence 8887 56 99999998754211 23456899999997 89999999997543210
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
..+...|..+++. .+++++++||+.+++....+ +
T Consensus 113 -----------------------------------~~~~~~~~~l~~~-~gi~~tilRp~~f~~~~~~~-------~--- 146 (285)
T TIGR03649 113 -----------------------------------PAMGQVHAHLDSL-GGVEYTVLRPTWFMENFSEE-------F--- 146 (285)
T ss_pred -----------------------------------chHHHHHHHHHhc-cCCCEEEEeccHHhhhhccc-------c---
Confidence 0122234555442 48999999999887642111 0
Q ss_pred HHHHHHHh-cCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhh
Q psy16252 331 TGLVTGAQ-AGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEG 409 (545)
Q Consensus 331 ~~~~~~~~-~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~ 409 (545)
...... .|. .+.+.++..+++|+++|+|+++..++..+.. .+++|+++++ +.+|+.|+++.+.+.+
T Consensus 147 --~~~~~~~~~~--~~~~~g~~~~~~v~~~Dva~~~~~~l~~~~~-------~~~~~~l~g~--~~~s~~eia~~l~~~~ 213 (285)
T TIGR03649 147 --HVEAIRKENK--IYSATGDGKIPFVSADDIARVAYRALTDKVA-------PNTDYVVLGP--ELLTYDDVAEILSRVL 213 (285)
T ss_pred --cccccccCCe--EEecCCCCccCcccHHHHHHHHHHHhcCCCc-------CCCeEEeeCC--ccCCHHHHHHHHHHHh
Confidence 001111 122 2345578889999999999999999877543 4689999998 8999999999999999
Q ss_pred ccc
Q psy16252 410 VKI 412 (545)
Q Consensus 410 ~~~ 412 (545)
|+.
T Consensus 214 g~~ 216 (285)
T TIGR03649 214 GRK 216 (285)
T ss_pred CCc
Confidence 874
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-21 Score=156.17 Aligned_cols=86 Identities=29% Similarity=0.595 Sum_probs=82.9
Q ss_pred HHhHHHHhhhhccC--CC-CchhHH----HhhhccccccccCeeEeecchHHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q psy16252 442 GQLQRAVHVDPSTR--GG-PGSISV----QYSGPRLGRLSAREWEWDNSNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLR 514 (545)
Q Consensus 442 ~~~~p~~~~d~~~~--G~-~~~~~~----~~~~~~~~~f~~~~~~f~~~~~~~l~~~~~~~d~~~f~~d~~~~~w~~y~~ 514 (545)
.|.+||+++|.++. |+ |++.++ .++.+++++|+.++|.|+++|+.+|++.|+++|++.|+||++.+||++|+.
T Consensus 2 ~h~lPA~~~D~~~~l~g~kp~~~k~~~ki~~~~~~~~~F~~~eW~F~~~n~~~L~~~l~~~D~~~F~fD~~~idW~~Y~~ 81 (94)
T PF03015_consen 2 FHFLPAYLLDLILRLFGQKPRMVKIYRKIRKALEVLEYFTTNEWIFDNDNTRRLWERLSPEDREIFNFDIRSIDWEEYFR 81 (94)
T ss_pred cchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhCceeecchHHHHHHHhCchhcCceecCCCCCCCHHHHHH
Confidence 58899999999999 98 988877 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy16252 515 AYVRGTLVHHLQD 527 (545)
Q Consensus 515 ~~~~g~~~~~~ke 527 (545)
+|+.|+|||++||
T Consensus 82 ~~~~G~rkyllke 94 (94)
T PF03015_consen 82 NYIPGIRKYLLKE 94 (94)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999997
|
The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process |
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=192.16 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=141.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|+++|+ +|++++|...... ....+++. |+. +. .
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~---~Vi~ldr~~~~~~-----------------~~~ve~v~~Dl~------d~-~ 53 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH---TVSGIAQHPHDAL-----------------DPRVDYVCASLR------NP-V 53 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeCChhhcc-----------------cCCceEEEccCC------CH-H
Confidence 4799999999999999999999876 6888888542110 01223333 766 33 3
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHHH
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSEL 256 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~ 256 (545)
+.+++.++|+|||+|+..... ...+|+.|+.|++++|++. ++ ++||+||.+ +..
T Consensus 54 l~~al~~~D~VIHLAa~~~~~-----~~~vNv~Gt~nLleAA~~~-Gv-RiV~~SS~~--G~~----------------- 107 (699)
T PRK12320 54 LQELAGEADAVIHLAPVDTSA-----PGGVGITGLAHVANAAARA-GA-RLLFVSQAA--GRP----------------- 107 (699)
T ss_pred HHHHhcCCCEEEEcCccCccc-----hhhHHHHHHHHHHHHHHHc-CC-eEEEEECCC--CCC-----------------
Confidence 667778999999999864211 1258999999999999997 66 699999874 211
Q ss_pred HHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHHH
Q psy16252 257 LKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTG 336 (545)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~ 336 (545)
..|. .+|.++.. .+++++|+|+++|||+...+. ...++..
T Consensus 108 -------------------------~~~~----~aE~ll~~--~~~p~~ILR~~nVYGp~~~~~---------~~r~I~~ 147 (699)
T PRK12320 108 -------------------------ELYR----QAETLVST--GWAPSLVIRIAPPVGRQLDWM---------VCRTVAT 147 (699)
T ss_pred -------------------------cccc----HHHHHHHh--cCCCEEEEeCceecCCCCccc---------HhHHHHH
Confidence 1122 36777765 358999999999999743211 0122222
Q ss_pred HhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 337 AQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 337 ~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
...... ....+.++||||++++++.++.... .++||++++ +.+|+.|+++.+...
T Consensus 148 ~l~~~~------~~~pI~vIyVdDvv~alv~al~~~~---------~GiyNIG~~--~~~Si~el~~~i~~~ 202 (699)
T PRK12320 148 LLRSKV------SARPIRVLHLDDLVRFLVLALNTDR---------NGVVDLATP--DTTNVVTAWRLLRSV 202 (699)
T ss_pred HHHHHH------cCCceEEEEHHHHHHHHHHHHhCCC---------CCEEEEeCC--CeeEHHHHHHHHHHh
Confidence 221110 1234456999999999999886532 359999999 899999999988766
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=197.34 Aligned_cols=215 Identities=20% Similarity=0.191 Sum_probs=147.5
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
..|+|||||||||||++|++.|.+.|+++. +.. . |++ +.+
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~--~~~--~------------------------------~l~------d~~ 418 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYE--YGK--G------------------------------RLE------DRS 418 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEE--eec--c------------------------------ccc------cHH
Confidence 357899999999999999999998876421 211 0 333 333
Q ss_pred HHHHHhc--CccEEEEcccccc---c---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC--------
Q psy16252 176 DKRLVTS--KVNLVFHCAATLR---F---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR-------- 239 (545)
Q Consensus 176 ~~~~l~~--~vd~Vih~Aa~~~---~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~-------- 239 (545)
.+..+++ ++|+||||||... . .......+++|+.||.+|+++|++. +++ ++++||.++++..
T Consensus 419 ~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~-g~~-~v~~Ss~~v~~~~~~~~~~~~ 496 (668)
T PLN02260 419 SLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN-GLL-MMNFATGCIFEYDAKHPEGSG 496 (668)
T ss_pred HHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc-CCe-EEEEcccceecCCcccccccC
Confidence 4444444 6899999999763 2 2345778899999999999999997 775 6788888877532
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCC
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEP 319 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~ 319 (545)
.++.|+..+.| ..+.|+.||+.+|+++..+. +..++|+..+||.....
T Consensus 497 ~p~~E~~~~~~-----------------------------~~~~Yg~sK~~~E~~~~~~~---~~~~~r~~~~~~~~~~~ 544 (668)
T PLN02260 497 IGFKEEDKPNF-----------------------------TGSFYSKTKAMVEELLREYD---NVCTLRVRMPISSDLSN 544 (668)
T ss_pred CCCCcCCCCCC-----------------------------CCChhhHHHHHHHHHHHhhh---hheEEEEEEecccCCCC
Confidence 12333321111 12789999999999998863 56788888888742111
Q ss_pred CCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHH
Q psy16252 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWG 399 (545)
Q Consensus 320 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~ 399 (545)
...++..+...... +.. ..+...+||++.+++.++.. . .+++||++++ ..+||.
T Consensus 545 ----------~~nfv~~~~~~~~~-~~v----p~~~~~~~~~~~~~~~l~~~-~--------~~giyni~~~--~~~s~~ 598 (668)
T PLN02260 545 ----------PRNFITKISRYNKV-VNI----PNSMTVLDELLPISIEMAKR-N--------LRGIWNFTNP--GVVSHN 598 (668)
T ss_pred ----------ccHHHHHHhcccee-ecc----CCCceehhhHHHHHHHHHHh-C--------CCceEEecCC--CcCcHH
Confidence 12333333332221 111 13467789999888877753 2 2589999998 789999
Q ss_pred HHHHHHHHhhc
Q psy16252 400 EFITKSLKEGV 410 (545)
Q Consensus 400 el~~~l~~~~~ 410 (545)
|+++.+.+..+
T Consensus 599 e~a~~i~~~~~ 609 (668)
T PLN02260 599 EILEMYKDYID 609 (668)
T ss_pred HHHHHHHHhcC
Confidence 99999988754
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-18 Score=166.31 Aligned_cols=233 Identities=17% Similarity=0.116 Sum_probs=151.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++++++|++.|+ +|+++.|+.. ++..... .. .....++. |++ +.++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~---~v~~~~r~~~------~~~~~~~----~~-~~~~~~~~~D~~------~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD---RVAATVRRPD------ALDDLKA----RY-GDRLWVLQLDVT------DSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----hc-cCceEEEEccCC------CHHH
Confidence 7899999999999999999999875 6888888632 2221111 00 11233444 887 4445
Q ss_pred HHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEeccccccC
Q psy16252 177 KRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 177 ~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v~~~ 238 (545)
+..++ .++|+|||+||.... .+.++..+++|+.|+.++++++ ++. +.++||++||..+...
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~ 141 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQ-GGGRIVQVSSEGGQIA 141 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcCcccccC
Confidence 55443 358999999997532 2445778899999999999997 333 5679999999754321
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee-
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV- 312 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i- 312 (545)
. ...+.|+.||+..|.+++.++ .+++++++|||.+
T Consensus 142 ~---------------------------------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~ 182 (276)
T PRK06482 142 Y---------------------------------------PGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPAR 182 (276)
T ss_pred C---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccc
Confidence 1 011679999999999887764 4899999999988
Q ss_pred --eccCCCCCCCCccCcc-chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 313 --ISTWKEPIPGWIDNLY-GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 313 --~g~~~~~~~g~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
+|+.... ........ .+...+...... +.. .-+.+++|++++++.++..... +..||++
T Consensus 183 t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~d~~~~~~a~~~~~~~~~~--------~~~~~~g 244 (276)
T PRK06482 183 TNFGAGLDR-GAPLDAYDDTPVGDLRRALAD--------GSF-AIPGDPQKMVQAMIASADQTPA--------PRRLTLG 244 (276)
T ss_pred cCCcccccc-cCCCccccchhhHHHHHHHhh--------ccC-CCCCCHHHHHHHHHHHHcCCCC--------CeEEecC
Confidence 4332111 00000000 011111111111 111 1135789999999999875543 5679999
Q ss_pred cCCCCcccHHHHHHHHHHhhc
Q psy16252 390 NSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 390 ~~~~~~~t~~el~~~l~~~~~ 410 (545)
++ +..+..++++.+.+...
T Consensus 245 ~~--~~~~~~~~~~~~~~~~~ 263 (276)
T PRK06482 245 SD--AYASIRAALSERLAALE 263 (276)
T ss_pred hH--HHHHHHHHHHHHHHHHH
Confidence 98 77788777776666543
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-18 Score=156.30 Aligned_cols=180 Identities=22% Similarity=0.263 Sum_probs=135.5
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDKR 178 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~~ 178 (545)
|+|+||||++|+.++++|+++|+ +|++++|++... .. ..+.+++. |+. +.+.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~---~V~~~~R~~~~~------~~----------~~~~~~~~~d~~------d~~~~~ 55 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH---EVTALVRSPSKA------ED----------SPGVEIIQGDLF------DPDSVK 55 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS---EEEEEESSGGGH------HH----------CTTEEEEESCTT------CHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCC---EEEEEecCchhc------cc----------ccccccceeeeh------hhhhhh
Confidence 79999999999999999999964 899999986421 10 12344444 775 778899
Q ss_pred HHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcc-cccccCCCCCHHHHH
Q psy16252 179 LVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNI-EEIIYKAHTHYSELL 257 (545)
Q Consensus 179 ~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i-~E~~~~~~~~~~~~~ 257 (545)
++++++|+|||+++.... +...+.+++++++++ +++++|++||.+++...... ...
T Consensus 56 ~al~~~d~vi~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~~~~~~~~~~~~~~------------ 112 (183)
T PF13460_consen 56 AALKGADAVIHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSAGVYRDPPGLFSDE------------ 112 (183)
T ss_dssp HHHTTSSEEEECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEETTGTTTCTSEEEGG------------
T ss_pred hhhhhcchhhhhhhhhcc----------ccccccccccccccc-ccccceeeeccccCCCCCcccccc------------
Confidence 999999999999976433 177889999999997 89999999999988753310 000
Q ss_pred HhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHH
Q psy16252 258 KISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGA 337 (545)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~ 337 (545)
.......|...|..+|+++++ .+++++++||+.++|.....
T Consensus 113 -------------------~~~~~~~~~~~~~~~e~~~~~--~~~~~~ivrp~~~~~~~~~~------------------ 153 (183)
T PF13460_consen 113 -------------------DKPIFPEYARDKREAEEALRE--SGLNWTIVRPGWIYGNPSRS------------------ 153 (183)
T ss_dssp -------------------TCGGGHHHHHHHHHHHHHHHH--STSEEEEEEESEEEBTTSSS------------------
T ss_pred -------------------cccchhhhHHHHHHHHHHHHh--cCCCEEEEECcEeEeCCCcc------------------
Confidence 001115688999999999986 58999999999999974221
Q ss_pred hcCceeEEecCCCCcccceehHHHHHHHHhccc
Q psy16252 338 QAGVVRTFLVDPDVKADIVPADLVVNALICAPW 370 (545)
Q Consensus 338 ~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~ 370 (545)
...+...+....++|+++|+|.+++.++.
T Consensus 154 ----~~~~~~~~~~~~~~i~~~DvA~~~~~~l~ 182 (183)
T PF13460_consen 154 ----YRLIKEGGPQGVNFISREDVAKAIVEALE 182 (183)
T ss_dssp ----EEEESSTSTTSHCEEEHHHHHHHHHHHHH
T ss_pred ----eeEEeccCCCCcCcCCHHHHHHHHHHHhC
Confidence 11111244566799999999999998875
|
... |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=163.88 Aligned_cols=232 Identities=14% Similarity=0.124 Sum_probs=151.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+|+|+||||||++|++++++|++.|+ +|++++|..... .... . .....+++. |+.+. .
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~---~V~~~~R~~~~~------~~~~----~--~~~~~~~~~~Dl~d~-----~ 75 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF---AVKAGVRDVDKA------KTSL----P--QDPSLQIVRADVTEG-----S 75 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC---EEEEEecCHHHH------HHhc----c--cCCceEEEEeeCCCC-----H
Confidence 468999999999999999999999875 688888875321 1000 0 001233444 77641 2
Q ss_pred HHHHHHh-cCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCH
Q psy16252 175 DDKRLVT-SKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHY 253 (545)
Q Consensus 175 ~~~~~l~-~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~ 253 (545)
+.+.+.+ .++|+|||+++......+ ...+++|+.++.++++++.+. ++++||++||.++++..... ....+.
T Consensus 76 ~~l~~~~~~~~d~vi~~~g~~~~~~~-~~~~~~n~~~~~~ll~a~~~~-~~~~iV~iSS~~v~g~~~~~---~~~~~~-- 148 (251)
T PLN00141 76 DKLVEAIGDDSDAVICATGFRRSFDP-FAPWKVDNFGTVNLVEACRKA-GVTRFILVSSILVNGAAMGQ---ILNPAY-- 148 (251)
T ss_pred HHHHHHhhcCCCEEEECCCCCcCCCC-CCceeeehHHHHHHHHHHHHc-CCCEEEEEccccccCCCccc---ccCcch--
Confidence 4565666 689999999886421111 223578999999999999986 78999999999887643210 000000
Q ss_pred HHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHH
Q psy16252 254 SELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGL 333 (545)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~ 333 (545)
... .....|..+|..+|+++++ .+++++++|||.+++....
T Consensus 149 ----------------~~~------~~~~~~~~~k~~~e~~l~~--~gi~~~iirpg~~~~~~~~--------------- 189 (251)
T PLN00141 149 ----------------IFL------NLFGLTLVAKLQAEKYIRK--SGINYTIVRPGGLTNDPPT--------------- 189 (251)
T ss_pred ----------------hHH------HHHHHHHHHHHHHHHHHHh--cCCcEEEEECCCccCCCCC---------------
Confidence 000 0002355679999998876 5899999999999875211
Q ss_pred HHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCC-cccHHHHHHHHHH
Q psy16252 334 VTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDN-PLTWGEFITKSLK 407 (545)
Q Consensus 334 ~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~-~~t~~el~~~l~~ 407 (545)
+... ..........+|+.+|||++++.++..+.. ...++.+++..++ ..++.+++..+.+
T Consensus 190 ------~~~~-~~~~~~~~~~~i~~~dvA~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 190 ------GNIV-MEPEDTLYEGSISRDQVAEVAVEALLCPES-------SYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred ------ceEE-ECCCCccccCcccHHHHHHHHHHHhcChhh-------cCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 1111 111111223579999999999999877654 3678888864334 3788888876653
|
|
| >KOG1431|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=147.76 Aligned_cols=243 Identities=15% Similarity=0.086 Sum_probs=175.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
++|||||+||.+|++|.+.+..+|.+....+. . ..+.. |++ +.++.
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf-~-~skd~--------------------------DLt------~~a~t 47 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVF-I-GSKDA--------------------------DLT------NLADT 47 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEE-e-ccccc--------------------------ccc------chHHH
Confidence 78999999999999999999998764334332 2 22111 666 55677
Q ss_pred HHHhc--CccEEEEccccccc---hH-HHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCC
Q psy16252 178 RLVTS--KVNLVFHCAATLRF---DE-ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKA 249 (545)
Q Consensus 178 ~~l~~--~vd~Vih~Aa~~~~---~~-~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~ 249 (545)
+.+++ +...|||+||.+.. +. ..-.+++.|+.-..|++..|-+. ++++++++-|...+++.. +|+|.....
T Consensus 48 ~~lF~~ekPthVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~-gv~K~vsclStCIfPdkt~yPIdEtmvh~ 126 (315)
T KOG1431|consen 48 RALFESEKPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEH-GVKKVVSCLSTCIFPDKTSYPIDETMVHN 126 (315)
T ss_pred HHHHhccCCceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHh-chhhhhhhcceeecCCCCCCCCCHHHhcc
Confidence 77776 67999999998731 11 22567899999999999999997 888899888888877643 666654321
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCc
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNL 327 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~ 327 (545)
.. +.+..-+|+..|.++.-.-+.++ .|..++.+-|.++||+...--|...
T Consensus 127 gp-------------------------phpsN~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~s--- 178 (315)
T KOG1431|consen 127 GP-------------------------PHPSNFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENS--- 178 (315)
T ss_pred CC-------------------------CCCCchHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccc---
Confidence 10 01111479999999887776666 7899999999999998654322211
Q ss_pred cchHHHHHHH----hcCc-eeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHH
Q psy16252 328 YGPTGLVTGA----QAGV-VRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFI 402 (545)
Q Consensus 328 ~~~~~~~~~~----~~g~-~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~ 402 (545)
....+++..+ ..|. ...++|.+...+.|+|++|+|++++..+..-.. -+..+++.+....+|++|++
T Consensus 179 HVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr~Y~~--------vEpiils~ge~~EVtI~e~a 250 (315)
T KOG1431|consen 179 HVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLREYEG--------VEPIILSVGESDEVTIREAA 250 (315)
T ss_pred cchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHHhhcC--------ccceEeccCccceeEHHHHH
Confidence 1112333332 2343 456789999999999999999999999877654 56777887755689999999
Q ss_pred HHHHHhhcc
Q psy16252 403 TKSLKEGVK 411 (545)
Q Consensus 403 ~~l~~~~~~ 411 (545)
+.+.+..+-
T Consensus 251 eaV~ea~~F 259 (315)
T KOG1431|consen 251 EAVVEAVDF 259 (315)
T ss_pred HHHHHHhCC
Confidence 999998654
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-17 Score=167.54 Aligned_cols=241 Identities=16% Similarity=0.137 Sum_probs=154.4
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhh---hcCCCccc-CCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLK---FTCSTSKE-SAQA 167 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~---~~~~~~~~-Dl~~ 167 (545)
+...|++||||||+|+||++++++|++.|+ +|++++|.... .+++...+.. ...... ..+..++. |+.
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~---~Vval~Rn~ek---l~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt- 148 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF---RVRAGVRSAQR---AESLVQSVKQMKLDVEGTQPVEKLEIVECDLE- 148 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC---eEEEEeCCHHH---HHHHHHHhhhhccccccccccCceEEEEecCC-
Confidence 446689999999999999999999999876 68888887432 1111111100 000000 01233444 887
Q ss_pred CCCCCCHHHHHHHhcCccEEEEccccccch-HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccc
Q psy16252 168 PDLGLSPDDKRLVTSKVNLVFHCAATLRFD-EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEII 246 (545)
Q Consensus 168 ~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~-~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~ 246 (545)
+.+++..++.++|+|||+||..... ..+...+++|+.|+.+++++|... ++++||++||.++..... .+..
T Consensus 149 -----D~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a-gVgRIV~VSSiga~~~g~--p~~~ 220 (576)
T PLN03209 149 -----KPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA-KVNHFILVTSLGTNKVGF--PAAI 220 (576)
T ss_pred -----CHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh-CCCEEEEEccchhcccCc--cccc
Confidence 6677888889999999999875321 234556789999999999999987 789999999987631110 0000
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
+ .....|...|..+|+.+.. .|++++|||||.+.++.... ..
T Consensus 221 ~-------------------------------~sk~~~~~~KraaE~~L~~--sGIrvTIVRPG~L~tp~d~~----~~- 262 (576)
T PLN03209 221 L-------------------------------NLFWGVLCWKRKAEEALIA--SGLPYTIVRPGGMERPTDAY----KE- 262 (576)
T ss_pred h-------------------------------hhHHHHHHHHHHHHHHHHH--cCCCEEEEECCeecCCcccc----cc-
Confidence 0 0014688889999999876 58999999999997652210 00
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCC-cccHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDN-PLTWGEFITKS 405 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~-~~t~~el~~~l 405 (545)
.+.+... .......-.+..+|||++++.++.+... ..+.+|.+.++... ...+.+++..+
T Consensus 263 ------------t~~v~~~-~~d~~~gr~isreDVA~vVvfLasd~~a------s~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 263 ------------THNLTLS-EEDTLFGGQVSNLQVAELMACMAKNRRL------SYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred ------------ccceeec-cccccCCCccCHHHHHHHHHHHHcCchh------ccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 0111111 1111112358889999999998886543 14789999886211 13455554433
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.8e-17 Score=157.39 Aligned_cols=227 Identities=13% Similarity=0.101 Sum_probs=144.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++++++|||||||+||.++++.|++.|+ +|+++.|++.. .+++...+.. . ...+.++. |++ +
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~---~v~~~~r~~~~---~~~~~~~~~~----~-~~~~~~~~~Dl~------~ 67 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA---AVAIADLNQDG---ANAVADEINK----A-GGKAIGVAMDVT------N 67 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEeCChHH---HHHHHHHHHh----c-CceEEEEECCCC------C
Confidence 4579999999999999999999999876 57778886431 1111111110 0 01122334 887 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHH----HHHHHHHH-HHccCCceEEEEeccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCA----TQTMLDLA-KQCKNLKMFTYVSTAF 234 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~g----t~~ll~~a-~~~~~~~~~v~vSS~~ 234 (545)
.+.+..+++ .+|+||||||.... .+.++..+++|+.+ +.++++.+ +.. +.+++|++||.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss~~ 146 (262)
T PRK13394 68 EDAVNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGSVH 146 (262)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcchh
Confidence 455555443 48999999997532 24456778899999 66677777 443 678999999975
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... ...+.|+.+|...+.+++.++ .+++++++||
T Consensus 147 ~~~~~---------------------------------------~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~p 187 (262)
T PRK13394 147 SHEAS---------------------------------------PLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCP 187 (262)
T ss_pred hcCCC---------------------------------------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEee
Confidence 54211 111579999999988887664 5799999999
Q ss_pred ceeeccCCCC-CCCCccCc-cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 310 SIVISTWKEP-IPGWIDNL-YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 310 ~~i~g~~~~~-~~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
|.++++.... .+...... .......... +..+....++++++|++++++.++..... ...++.|+
T Consensus 188 g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~dva~a~~~l~~~~~~-----~~~g~~~~ 254 (262)
T PRK13394 188 GFVRTPLVDKQIPEQAKELGISEEEVVKKV--------MLGKTVDGVFTTVEDVAQTVLFLSSFPSA-----ALTGQSFV 254 (262)
T ss_pred CcccchhhhhhhHhhhhccCCChHHHHHHH--------HhcCCCCCCCCCHHHHHHHHHHHcCcccc-----CCcCCEEe
Confidence 9999863211 00000000 0001111111 12234456899999999999998875432 12367888
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 255 ~~~g 258 (262)
T PRK13394 255 VSHG 258 (262)
T ss_pred eCCc
Confidence 8765
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-17 Score=158.35 Aligned_cols=234 Identities=13% Similarity=0.047 Sum_probs=151.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++||||||+|+||++++++|+++|+ +|+++.|+... +..... .. .....++. |++ +.+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~---~V~~~~r~~~~------~~~~~~----~~-~~~~~~~~~D~~------~~~ 62 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD---RVVATARDTAT------LADLAE----KY-GDRLLPLALDVT------DRA 62 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEECCHHH------HHHHHH----hc-cCCeeEEEccCC------CHH
Confidence 68999999999999999999999865 68888886421 111111 01 11222333 776 445
Q ss_pred HHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecccccc
Q psy16252 176 DKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 176 ~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v~~ 237 (545)
++..+++ .+|+||||||.... .+.++..+++|+.++.++++.+ ++. +.+++|++||.++..
T Consensus 63 ~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~vsS~~~~~ 141 (275)
T PRK08263 63 AVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQ-RSGHIIQISSIGGIS 141 (275)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEcChhhcC
Confidence 5544433 67999999997642 2567888999999998888776 333 567999999987654
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
... ....|+.||+..+.+.+..+ .|++++++|||.+
T Consensus 142 ~~~---------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~ 182 (275)
T PRK08263 142 AFP---------------------------------------MSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGY 182 (275)
T ss_pred CCC---------------------------------------CccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCc
Confidence 321 11579999999888886654 6899999999998
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccc-eehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADI-VPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++...+.............+...... ......+ +.++|+|++++.++..... .+..++...+
T Consensus 183 ~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~p~dva~~~~~l~~~~~~-------~~~~~~~~~~ 246 (275)
T PRK08263 183 STDWAGTSAKRATPLDAYDTLREELAE---------QWSERSVDGDPEAAAEALLKLVDAENP-------PLRLFLGSGV 246 (275)
T ss_pred cCCccccccccCCCchhhhhHHHHHHH---------HHHhccCCCCHHHHHHHHHHHHcCCCC-------CeEEEeCchH
Confidence 765432111000000000111111111 0111234 8899999999999887654 2344444444
Q ss_pred CCCcccHHHHHHHHHHh
Q psy16252 392 KDNPLTWGEFITKSLKE 408 (545)
Q Consensus 392 ~~~~~t~~el~~~l~~~ 408 (545)
.++++.++.+.+.++
T Consensus 247 --~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 247 --LDLAKADYERRLATW 261 (275)
T ss_pred --HHHHHHHHHHHHHHH
Confidence 678999998888876
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=154.58 Aligned_cols=224 Identities=12% Similarity=0.037 Sum_probs=142.4
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++||||||||+||++++++|+++|+ +|+++.|+... .+.+...+. .. .....++. |+. +.+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~---~v~~~~r~~~~---~~~~~~~~~----~~-~~~~~~~~~D~~------~~~ 63 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGA---NVVVNDLGEAG---AEAAAKVAT----DA-GGSVIYLVADVT------KED 63 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHHHHH----hc-CCceEEEECCCC------CHH
Confidence 37899999999999999999999875 68888887421 111211111 00 11222333 776 445
Q ss_pred HHHH-------HhcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecccccc
Q psy16252 176 DKRL-------VTSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 176 ~~~~-------l~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v~~ 237 (545)
++.. .+.++|+|||+|+.... .+.++..+++|+.|+..+++.+. +. +.++||++||..+..
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~~v~~ss~~~~~ 142 (255)
T TIGR01963 64 EIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQ-GWGRIINIASAHGLV 142 (255)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEEcchhhcC
Confidence 4433 33468999999987532 23456778899999888888773 33 578999999986543
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
... ....|+.+|...|.+++.+. .+++++++|||.+
T Consensus 143 ~~~---------------------------------------~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v 183 (255)
T TIGR01963 143 ASP---------------------------------------FKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYV 183 (255)
T ss_pred CCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcc
Confidence 210 11579999999998887654 4899999999999
Q ss_pred eccCCCC-CC-CCc-cCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 313 ISTWKEP-IP-GWI-DNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 313 ~g~~~~~-~~-g~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
+++.... .+ .+. .+.. ....+... ........++++++|+|++++.++..... ...+++|++.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~d~a~~~~~~~~~~~~-----~~~g~~~~~~ 249 (255)
T TIGR01963 184 RTPLVEKQIADQAKTRGIP-EEQVIREV--------MLPGQPTKRFVTVDEVAETALFLASDAAA-----GITGQAIVLD 249 (255)
T ss_pred ccHHHHHHHHhhhcccCCC-chHHHHHH--------HHccCccccCcCHHHHHHHHHHHcCcccc-----CccceEEEEc
Confidence 8863110 00 000 0000 00000000 11233456799999999999999876422 1246789988
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 250 ~g 251 (255)
T TIGR01963 250 GG 251 (255)
T ss_pred Cc
Confidence 75
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-18 Score=138.94 Aligned_cols=84 Identities=32% Similarity=0.591 Sum_probs=79.3
Q ss_pred HHhHHHHhhhhccC--CC-CchhHH----HhhhccccccccCeeEeecchHHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q psy16252 442 GQLQRAVHVDPSTR--GG-PGSISV----QYSGPRLGRLSAREWEWDNSNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLR 514 (545)
Q Consensus 442 ~~~~p~~~~d~~~~--G~-~~~~~~----~~~~~~~~~f~~~~~~f~~~~~~~l~~~~~~~d~~~f~~d~~~~~w~~y~~ 514 (545)
.|.+|++++|.+.. |+ |++.++ .++.+++++|+.++|.|+++|+.+|++.|+++|++.|+||++.+||++|++
T Consensus 2 ~~~lpa~~~d~~~~l~g~~~~~~~~~~k~~~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~~Dr~~F~fD~~~idW~~Y~~ 81 (92)
T cd09071 2 LHLLPAYLLDLLLRLLGRKPRLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFE 81 (92)
T ss_pred cccchHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhccccCeEEeeCcHHHHHHHHCCHHHHHhCCCCCCCCCHHHHHH
Confidence 46789999999998 88 887776 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q psy16252 515 AYVRGTLVHHL 525 (545)
Q Consensus 515 ~~~~g~~~~~~ 525 (545)
+|+.|+|+|++
T Consensus 82 ~~~~G~r~yll 92 (92)
T cd09071 82 NYIPGLRKYLL 92 (92)
T ss_pred HHHHHHHHHhC
Confidence 99999999985
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. |
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-16 Score=149.09 Aligned_cols=219 Identities=12% Similarity=0.078 Sum_probs=137.7
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+++||||||+||||++++++|++.|+ +|+++.|.... ..+.+...+. ........++. |++ +.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~---~v~~~~r~~~~--~~~~~~~~~~----~~~~~~~~~~~~Dl~------~~ 69 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY---RVAIHYHRSAA--EADALAAELN----ALRPGSAAALQADLL------DP 69 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCHH--HHHHHHHHHH----hhcCCceEEEEcCCC------CH
Confidence 468999999999999999999999865 68888876421 1111111110 00011222333 887 55
Q ss_pred HHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccC
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~ 238 (545)
+.+..+++ .+|+|||+||... ..+.++..+++|+.|+.++++++... ..-..++++|+......
T Consensus 70 ~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (249)
T PRK09135 70 DALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAERP 149 (249)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcCC
Confidence 56665554 5799999999632 12456778899999999999998642 12235666555332110
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceeec
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVIS 314 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~g 314 (545)
. ...+.|+.||+.+|.+++.++ .+++++++|||.++|
T Consensus 150 ---------~------------------------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~ 190 (249)
T PRK09135 150 ---------L------------------------------KGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILW 190 (249)
T ss_pred ---------C------------------------------CCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccC
Confidence 0 111679999999999998865 469999999999999
Q ss_pred cCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 315 TWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+.... + +. .........+. + ...+.+++|+|+++..++..... ..+.+||+.++
T Consensus 191 ~~~~~--~----~~--~~~~~~~~~~~-~--------~~~~~~~~d~a~~~~~~~~~~~~------~~g~~~~i~~g 244 (249)
T PRK09135 191 PEDGN--S----FD--EEARQAILART-P--------LKRIGTPEDIAEAVRFLLADASF------ITGQILAVDGG 244 (249)
T ss_pred ccccc--c----CC--HHHHHHHHhcC-C--------cCCCcCHHHHHHHHHHHcCcccc------ccCcEEEECCC
Confidence 85321 1 11 11111111111 1 11223589999999655543211 24789999987
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=149.01 Aligned_cols=239 Identities=14% Similarity=0.163 Sum_probs=154.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++|+||||+|+||.++++.|+++|+ +|+++.|+... +......+.......+..++. |++ +
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~---~V~~~~r~~~~------~~~~~~~l~~~~~~~~~~~~~~Dl~------~ 69 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA---AVMIVGRNPDK------LAAAAEEIEALKGAGAVRYEPADVT------D 69 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEeCCHHH------HHHHHHHHHhccCCCceEEEEcCCC------C
Confidence 4579999999999999999999999876 68888886421 111111110000011223333 777 4
Q ss_pred HHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
++++..+++ .+|+|||+||... ..+.+...+++|+.++.++++.+.+. .+..+|+++||..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~ 149 (276)
T PRK05875 70 EDQVARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAA 149 (276)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhh
Confidence 555555544 6899999998542 12345677899999999999877552 13358999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... ...+.|+.+|+..|.+++.+. .+++++++|||
T Consensus 150 ~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg 190 (276)
T PRK05875 150 SNTH---------------------------------------RWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPG 190 (276)
T ss_pred cCCC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecC
Confidence 4321 112679999999999998765 57999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.+.++.... ............. ......++.++|+|++++.++..+.. ...+++|++.+
T Consensus 191 ~v~t~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~~~~~~-----~~~g~~~~~~~ 249 (276)
T PRK05875 191 LIRTDLVAP-------ITESPELSADYRA---------CTPLPRVGEVEDVANLAMFLLSDAAS-----WITGQVINVDG 249 (276)
T ss_pred ccCCccccc-------cccCHHHHHHHHc---------CCCCCCCcCHHHHHHHHHHHcCchhc-----CcCCCEEEECC
Confidence 886653211 0000111111111 01123367799999999999876543 12378999988
Q ss_pred CCCCcc----cHHHHHHHHHHhhc
Q psy16252 391 SKDNPL----TWGEFITKSLKEGV 410 (545)
Q Consensus 391 ~~~~~~----t~~el~~~l~~~~~ 410 (545)
+ ..+ +..|+++.+.+..+
T Consensus 250 g--~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 250 G--HMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred C--eeccCCccHHHHHHHHhhHHH
Confidence 7 444 77777777665543
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-16 Score=149.85 Aligned_cols=218 Identities=12% Similarity=0.102 Sum_probs=146.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+.+|+|+||||+|++|.+++++|+++|+ +|+++.|+... +... ...+... ...++. |+.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~---~V~~~~r~~~~------~~~~----~~~l~~~~~~~~~~~~Dl~----- 65 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA---EVIVVDICGDD------AAAT----AELVEAAGGKARARQVDVR----- 65 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEeCCHHH------HHHH----HHHHHhcCCeEEEEECCCC-----
Confidence 3578999999999999999999999875 68889887421 1111 1111111 122333 776
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~ 234 (545)
+.+++..+++ .+|+|||+|+.... .+.+...+++|+.++.++++.+.. ..+.++||++||..
T Consensus 66 -~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~ 144 (251)
T PRK12826 66 -DRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVA 144 (251)
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechH
Confidence 5566666654 68999999987643 245677889999999999988752 12567899999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+..... .....|+.+|..+|.+++.+. .+++++++||
T Consensus 145 ~~~~~~--------------------------------------~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~p 186 (251)
T PRK12826 145 GPRVGY--------------------------------------PGLAHYAASKAGLVGFTRALALELAARNITVNSVHP 186 (251)
T ss_pred hhccCC--------------------------------------CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEee
Confidence 651100 011579999999999998764 4899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.++|+...+.. ...+......+ .+ ...+++++|+|+++..++..... ...+++|++.
T Consensus 187 g~~~~~~~~~~~--------~~~~~~~~~~~-~~--------~~~~~~~~dva~~~~~l~~~~~~-----~~~g~~~~~~ 244 (251)
T PRK12826 187 GGVDTPMAGNLG--------DAQWAEAIAAA-IP--------LGRLGEPEDIAAAVLFLASDEAR-----YITGQTLPVD 244 (251)
T ss_pred CCCCcchhhhcC--------chHHHHHHHhc-CC--------CCCCcCHHHHHHHHHHHhCcccc-----CcCCcEEEEC
Confidence 999987432211 01111111111 11 11578999999999987755432 1247899998
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 245 ~g 246 (251)
T PRK12826 245 GG 246 (251)
T ss_pred CC
Confidence 76
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=151.97 Aligned_cols=227 Identities=11% Similarity=0.016 Sum_probs=142.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++|+||||||+||++++++|+++|+ +|+++.|.... .+.+...+.. ...+..++. |++ +
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~---~v~~~~r~~~~---~~~~~~~~~~-----~~~~~~~~~~Dl~------~ 64 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA---KVVIADLNDEA---AAAAAEALQK-----AGGKAIGVAMDVT------D 64 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCHHH---HHHHHHHHHh-----cCCcEEEEEcCCC------C
Confidence 3568999999999999999999999875 68888887432 1111111100 011222333 777 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v 235 (545)
.+++..+++ .+|+|||+|+.... .+.++..+++|+.++.++++.+ ++. +.++||++||.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~~~ 143 (258)
T PRK12429 65 EEAINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQ-GGGRIINMASVHG 143 (258)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc-CCeEEEEEcchhh
Confidence 555555544 68999999996432 2345667889999966665554 443 6789999999865
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... ..+.|+.+|+..+.+.+.++ .++++.++|||
T Consensus 144 ~~~~~---------------------------------------~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg 184 (258)
T PRK12429 144 LVGSA---------------------------------------GKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPG 184 (258)
T ss_pred ccCCC---------------------------------------CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecC
Confidence 43211 11679999998888876653 57999999999
Q ss_pred eeeccCCCCC-CCCccCcc-chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 311 IVISTWKEPI-PGWIDNLY-GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 311 ~i~g~~~~~~-~g~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
.+.++...+. +....... ......... +........+++++|+|++++.++..... ...++.|++
T Consensus 185 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~d~a~~~~~l~~~~~~-----~~~g~~~~~ 251 (258)
T PRK12429 185 YVDTPLVRKQIPDLAKERGISEEEVLEDV--------LLPLVPQKRFTTVEEIADYALFLASFAAK-----GVTGQAWVV 251 (258)
T ss_pred CCcchhhhhhhhhhccccCCChHHHHHHH--------HhccCCccccCCHHHHHHHHHHHcCcccc-----CccCCeEEe
Confidence 9988643210 00000000 000111111 11122335799999999999988765432 123678888
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 252 ~~g 254 (258)
T PRK12429 252 DGG 254 (258)
T ss_pred CCC
Confidence 765
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=154.09 Aligned_cols=226 Identities=12% Similarity=0.034 Sum_probs=141.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+++++||||||++|+++++.|+++|+ +|+++.|+.... +.+...... .-......++. |+++ .
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~---~V~~~~r~~~~~---~~~~~~~~~---~~~~~~~~~~~~D~~d------~ 66 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY---LVIATMRNPEKQ---ENLLSQATQ---LNLQQNIKVQQLDVTD------Q 66 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC---EEEEEeCCHHHH---HHHHHHHHh---cCCCCceeEEecCCCC------H
Confidence 468899999999999999999999875 688888874321 111111000 00011233344 8873 4
Q ss_pred HHHHH---H---hcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecccccc
Q psy16252 175 DDKRL---V---TSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 175 ~~~~~---l---~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v~~ 237 (545)
++++. + ...+|+||||||.... .+.++..+++|+.|+.++++.+ ++. +..+||++||..+..
T Consensus 67 ~~~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~vsS~~~~~ 145 (280)
T PRK06914 67 NSIHNFQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQ-KSGKIINISSISGRV 145 (280)
T ss_pred HHHHHHHHHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEECcccccC
Confidence 44433 2 2367999999986431 2456677899999999988886 333 567999999975432
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||...|.+++..+ .+++++++|||.+
T Consensus 146 ~~---------------------------------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~ 186 (280)
T PRK06914 146 GF---------------------------------------PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSY 186 (280)
T ss_pred CC---------------------------------------CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCc
Confidence 21 111679999999999887753 5899999999999
Q ss_pred eccCCCCCCCCccC-c---cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 313 ISTWKEPIPGWIDN-L---YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 313 ~g~~~~~~~g~~~~-~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
.++........... . ......+..... .. ......+++++|+|++++.++.+... ...|++
T Consensus 187 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~dva~~~~~~~~~~~~--------~~~~~~ 251 (280)
T PRK06914 187 NTNIWEVGKQLAENQSETTSPYKEYMKKIQK-HI------NSGSDTFGNPIDVANLIVEIAESKRP--------KLRYPI 251 (280)
T ss_pred ccchhhccccccccccccccchHHHHHHHHH-HH------hhhhhccCCHHHHHHHHHHHHcCCCC--------Cccccc
Confidence 87632211000000 0 000011111110 00 01234578899999999999887654 356888
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
+++
T Consensus 252 ~~~ 254 (280)
T PRK06914 252 GKG 254 (280)
T ss_pred CCc
Confidence 765
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-16 Score=148.54 Aligned_cols=217 Identities=13% Similarity=0.095 Sum_probs=144.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
..|+||||||||+||++|+++|+++|+ .|+++.|.... ..+.+...... ......++. |+. +.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~---~v~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~D~~------~~ 68 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA---DVVVHYRSDEE--AAEELVEAVEA-----LGRRAQAVQADVT------DK 68 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCCHH--HHHHHHHHHHh-----cCCceEEEECCcC------CH
Confidence 458999999999999999999999976 46666665431 11111111100 011233344 777 45
Q ss_pred HHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEeccccc
Q psy16252 175 DDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 175 ~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v~ 236 (545)
+.+..++ .++|+|||+||.... .+.+...+++|+.++.++++.+. +. +.++||++||..++
T Consensus 69 ~~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~i~~SS~~~~ 147 (249)
T PRK12825 69 AALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQ-RGGRIVNISSVAGL 147 (249)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEECccccC
Confidence 5555554 367999999996432 33457788999999999998874 43 57899999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.+|...|.+++.++ .+++++++|||.
T Consensus 148 ~~~~---------------------------------------~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~ 188 (249)
T PRK12825 148 PGWP---------------------------------------GRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGD 188 (249)
T ss_pred CCCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECC
Confidence 3211 11579999999998887654 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
++++...+. . ....... . . ......+++++|+++++..++..... ...+++|+++++
T Consensus 189 ~~~~~~~~~-------~-~~~~~~~----~-~-----~~~~~~~~~~~dva~~~~~~~~~~~~-----~~~g~~~~i~~g 245 (249)
T PRK12825 189 IDTDMKEAT-------I-EEAREAK----D-A-----ETPLGRSGTPEDIARAVAFLCSDASD-----YITGQVIEVTGG 245 (249)
T ss_pred ccCCccccc-------c-chhHHhh----h-c-----cCCCCCCcCHHHHHHHHHHHhCcccc-----CcCCCEEEeCCC
Confidence 999743221 0 0111110 0 0 01122389999999999998865432 235899999986
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.9e-16 Score=148.78 Aligned_cols=214 Identities=15% Similarity=0.162 Sum_probs=143.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||.++++.|++.|+ +|+++.|.... .+.+.. .+... ....+. |++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~---~vi~~~r~~~~---~~~~~~-------~~~~~~~~~~~~~~Dl~----- 65 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA---SVVVADINAEG---AERVAK-------QIVADGGTAIAVQVDVS----- 65 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHH-------HHHhcCCcEEEEEcCCC-----
Confidence 3578999999999999999999999875 68888886421 122211 11111 122233 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc----------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEe
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR----------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVS 231 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~----------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vS 231 (545)
+.+++..+++ .+|+|||+||... ..+.++..+++|+.++.++++++... .+.++||++|
T Consensus 66 -~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 144 (250)
T PRK07774 66 -DPDSAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS 144 (250)
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence 4455544443 6899999999642 12345677899999999999988753 1346899999
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
|..++... +.|+.||+..|.+++... .++++++
T Consensus 145 S~~~~~~~------------------------------------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~ 182 (250)
T PRK07774 145 STAAWLYS------------------------------------------NFYGLAKVGLNGLTQQLARELGGMNIRVNA 182 (250)
T ss_pred cccccCCc------------------------------------------cccHHHHHHHHHHHHHHHHHhCccCeEEEE
Confidence 98765321 579999999999988765 5799999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
++||.+..+..... .+..+......+... .-+..++|+|++++.++..... ...+++|
T Consensus 183 v~pg~~~t~~~~~~--------~~~~~~~~~~~~~~~---------~~~~~~~d~a~~~~~~~~~~~~-----~~~g~~~ 240 (250)
T PRK07774 183 IAPGPIDTEATRTV--------TPKEFVADMVKGIPL---------SRMGTPEDLVGMCLFLLSDEAS-----WITGQIF 240 (250)
T ss_pred EecCcccCcccccc--------CCHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHhChhhh-----CcCCCEE
Confidence 99998876532211 112222222222211 1245689999999988765421 1247899
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
++.++
T Consensus 241 ~v~~g 245 (250)
T PRK07774 241 NVDGG 245 (250)
T ss_pred EECCC
Confidence 99886
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-16 Score=151.37 Aligned_cols=214 Identities=12% Similarity=0.060 Sum_probs=135.7
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+++|+||||+|+||++++++|++.|+ +|+++.|+... .+.+... ...+...+. |++ +.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~~~---~~~l~~~--------~~~~~~~~~~D~~------d~ 62 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH---RVVGTVRSEAA---RADFEAL--------HPDRALARLLDVT------DF 62 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC---EEEEEeCCHHH---HHHHHhh--------cCCCeeEEEccCC------CH
Confidence 368899999999999999999999875 68888886421 1111110 001222333 777 45
Q ss_pred HHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEecccccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~v~~ 237 (545)
+.+..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++.. ..+..++|++||..+..
T Consensus 63 ~~~~~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~ 142 (277)
T PRK06180 63 DAIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLI 142 (277)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccC
Confidence 55555544 58999999997532 244567789999999999998643 12457899999986543
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||+..|.+++.++ .+++++++|||.|
T Consensus 143 ~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v 183 (277)
T PRK06180 143 TM---------------------------------------PGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSF 183 (277)
T ss_pred CC---------------------------------------CCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCc
Confidence 21 011679999999999887764 4899999999999
Q ss_pred eccCCCCCC-CCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 313 ISTWKEPIP-GWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 313 ~g~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
.++...... ............+........ ......+..++|+|++++.++.....
T Consensus 184 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~dva~~~~~~l~~~~~ 240 (277)
T PRK06180 184 RTDWAGRSMVRTPRSIADYDALFGPIRQARE------AKSGKQPGDPAKAAQAILAAVESDEP 240 (277)
T ss_pred ccCccccccccCCCCcHhHHHHHHHHHHHHH------hhccCCCCCHHHHHHHHHHHHcCCCC
Confidence 776432110 000001000111111100000 01112346799999999999876654
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=148.72 Aligned_cols=217 Identities=11% Similarity=0.125 Sum_probs=141.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl 172 (545)
.+++++||||+|+||++++++|+++|+ +|+++.|+.. ++..... .+.. ....++. |++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~Dl~------ 69 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF---PVALGARRVE------KCEELVD----KIRADGGEAVAFPLDVT------ 69 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCeEEEEECCCC------
Confidence 458999999999999999999999875 6777777532 1211111 1111 1122333 777
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+.+++..+++ .+|+|||+||.... .+.+...+++|+.++.++++.+... .+..+||++||..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~ 149 (274)
T PRK07775 70 DPDSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVA 149 (274)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHh
Confidence 5556655554 67999999997532 2445677899999999999887531 24568999999866
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
+.... ....|+.||+..|.+++.++ .+++++++|||
T Consensus 150 ~~~~~---------------------------------------~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG 190 (274)
T PRK07775 150 LRQRP---------------------------------------HMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPG 190 (274)
T ss_pred cCCCC---------------------------------------CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCC
Confidence 54211 11579999999999998765 48999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.+.++..... .. .....++..... .+ ......++++||+|++++.++..+.. +.+||+.-
T Consensus 191 ~~~t~~~~~~---~~--~~~~~~~~~~~~------~~-~~~~~~~~~~~dva~a~~~~~~~~~~--------~~~~~~~~ 250 (274)
T PRK07775 191 PTLTGMGWSL---PA--EVIGPMLEDWAK------WG-QARHDYFLRASDLARAITFVAETPRG--------AHVVNMEV 250 (274)
T ss_pred cccCcccccC---Ch--hhhhHHHHHHHH------hc-ccccccccCHHHHHHHHHHHhcCCCC--------CCeeEEee
Confidence 8755421100 00 000111111111 00 11234589999999999998876543 56888864
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=147.58 Aligned_cols=230 Identities=12% Similarity=0.010 Sum_probs=152.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++++||||||+||.++++.|++.|+ +|+++.|+... .+.. ...+......++. |+. +.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~---~v~~~~r~~~~------~~~~----~~~~~~~~~~~~~~D~~------~~~ 62 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD---RVLALDIDAAA------LAAF----ADALGDARFVPVACDLT------DAA 62 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC---EEEEEeCCHHH------HHHH----HHHhcCCceEEEEecCC------CHH
Confidence 47899999999999999999999865 68888886421 1111 1111112233344 877 555
Q ss_pred HHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccC
Q psy16252 176 DKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 176 ~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~ 238 (545)
++..+++ ++|+|||+||.... .+.+....++|+.++.++++.+... .+..+||++||......
T Consensus 63 ~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 142 (257)
T PRK07074 63 SLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA 142 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC
Confidence 6655554 48999999986431 2334566789999999999887431 24578999999754321
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
.. ...|+.||+..|.+++.++ .+++++++|||.+.
T Consensus 143 ~~----------------------------------------~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~ 182 (257)
T PRK07074 143 LG----------------------------------------HPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVK 182 (257)
T ss_pred CC----------------------------------------CcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCC
Confidence 10 1369999999999888775 47999999999997
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKD 393 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~ 393 (545)
++..... ......+...... .....++++++|++++++.++..... ...+.++++.++
T Consensus 183 t~~~~~~------~~~~~~~~~~~~~---------~~~~~~~~~~~d~a~~~~~l~~~~~~-----~~~g~~~~~~~g-- 240 (257)
T PRK07074 183 TQAWEAR------VAANPQVFEELKK---------WYPLQDFATPDDVANAVLFLASPAAR-----AITGVCLPVDGG-- 240 (257)
T ss_pred cchhhcc------cccChHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCchhc-----CcCCcEEEeCCC--
Confidence 7532110 0000111111111 12235789999999999999864322 123678888877
Q ss_pred CcccHHHHHHHHHH
Q psy16252 394 NPLTWGEFITKSLK 407 (545)
Q Consensus 394 ~~~t~~el~~~l~~ 407 (545)
......|+.+.+.+
T Consensus 241 ~~~~~~~~~~~~~~ 254 (257)
T PRK07074 241 LTAGNREMARTLTL 254 (257)
T ss_pred cCcCChhhhhhhcc
Confidence 67888999887654
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=149.30 Aligned_cols=224 Identities=21% Similarity=0.172 Sum_probs=151.8
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDKR 178 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~~ 178 (545)
|+|+||||.+|+++++.|++.++ .|.+++|+.+. ... ..++....+++. |+. +.+.+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~---~V~~l~R~~~~----~~~--------~~l~~~g~~vv~~d~~------~~~~l~ 59 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF---SVRALVRDPSS----DRA--------QQLQALGAEVVEADYD------DPESLV 59 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG---CEEEEESSSHH----HHH--------HHHHHTTTEEEES-TT-------HHHHH
T ss_pred CEEECCccHHHHHHHHHHHhCCC---CcEEEEeccch----hhh--------hhhhcccceEeecccC------CHHHHH
Confidence 79999999999999999999754 69999998621 111 122233444444 666 788999
Q ss_pred HHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHHHHH
Q psy16252 179 LVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLK 258 (545)
Q Consensus 179 ~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~ 258 (545)
++++++|+||.+-+..... -+....+++++|+++ ++++||+.|.........
T Consensus 60 ~al~g~d~v~~~~~~~~~~---------~~~~~~~li~Aa~~a-gVk~~v~ss~~~~~~~~~------------------ 111 (233)
T PF05368_consen 60 AALKGVDAVFSVTPPSHPS---------ELEQQKNLIDAAKAA-GVKHFVPSSFGADYDESS------------------ 111 (233)
T ss_dssp HHHTTCSEEEEESSCSCCC---------HHHHHHHHHHHHHHH-T-SEEEESEESSGTTTTT------------------
T ss_pred HHHcCCceEEeecCcchhh---------hhhhhhhHHHhhhcc-ccceEEEEEecccccccc------------------
Confidence 9999999999988765411 233456899999998 799999755544332110
Q ss_pred hhhccCCchhHHHhhhhhcCCCC-chHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHH
Q psy16252 259 ISKLDVDDPKYQETRERLSHENM-NTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGA 337 (545)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~ 337 (545)
..+| ...-..|...|+.+++. +++++++|||..+.....+.. .....
T Consensus 112 -------------------~~~p~~~~~~~k~~ie~~l~~~--~i~~t~i~~g~f~e~~~~~~~-----------~~~~~ 159 (233)
T PF05368_consen 112 -------------------GSEPEIPHFDQKAEIEEYLRES--GIPYTIIRPGFFMENLLPPFA-----------PVVDI 159 (233)
T ss_dssp -------------------TSTTHHHHHHHHHHHHHHHHHC--TSEBEEEEE-EEHHHHHTTTH-----------HTTCS
T ss_pred -------------------cccccchhhhhhhhhhhhhhhc--cccceeccccchhhhhhhhhc-----------ccccc
Confidence 0111 33556899999999885 899999999987664322110 00001
Q ss_pred hcC-ceeEEecCCCCcccce-ehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 338 QAG-VVRTFLVDPDVKADIV-PADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 338 ~~g-~~~~~~~~~~~~~~~v-~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
... ....++++++....++ ..+|+++++..++.++.. ...++.+.+++ +.+|++|+++.+.+..|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~-----~~~~~~~~~~~---~~~t~~eia~~~s~~~G~~ 228 (233)
T PF05368_consen 160 KKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEK-----HNNGKTIFLAG---ETLTYNEIAAILSKVLGKK 228 (233)
T ss_dssp CCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGG-----TTEEEEEEEGG---GEEEHHHHHHHHHHHHTSE
T ss_pred cccceEEEEccCCCccccccccHHHHHHHHHHHHcChHH-----hcCCEEEEeCC---CCCCHHHHHHHHHHHHCCc
Confidence 111 1234667777667775 999999999999988665 11356777766 5799999999999998873
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=152.01 Aligned_cols=224 Identities=12% Similarity=0.107 Sum_probs=144.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+++++||||+|+||.++++.|+++|+ +|+++.|+.. ++..... .+. ....++. |++ +
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~---~v~~~~r~~~------~~~~~~~----~~~-~~~~~~~~D~~------~ 63 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA---RVVIADIKPA------RARLAAL----EIG-PAAIAVSLDVT------R 63 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEcCCHH------HHHHHHH----HhC-CceEEEEccCC------C
Confidence 3478999999999999999999999875 6888877642 1111111 111 1223333 877 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v 235 (545)
.+++..+++ .+|++||+||.... .+.++..+++|+.++.++++++... ..-.++|++||...
T Consensus 64 ~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~ 143 (257)
T PRK07067 64 QDSIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAG 143 (257)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHh
Confidence 455555544 68999999997532 2456788999999999999998642 11247999999754
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||...+.+.+.++ .+++++++|||
T Consensus 144 ~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg 184 (257)
T PRK07067 144 RRGE---------------------------------------ALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPG 184 (257)
T ss_pred CCCC---------------------------------------CCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeC
Confidence 3211 011679999999988887654 68999999999
Q ss_pred eeeccCCCCCCCCccCc--cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 311 IVISTWKEPIPGWIDNL--YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
.|.++............ ..+..... ..+.......+++++|||++++.++..... ...+.+|++
T Consensus 185 ~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~dva~~~~~l~s~~~~-----~~~g~~~~v 250 (257)
T PRK07067 185 VVDTPMWDQVDALFARYENRPPGEKKR---------LVGEAVPLGRMGVPDDLTGMALFLASADAD-----YIVAQTYNV 250 (257)
T ss_pred cccchhhhhhhhhhhhccCCCHHHHHH---------HHhhcCCCCCccCHHHHHHHHHHHhCcccc-----cccCcEEee
Confidence 99886322110000000 00000000 112223345789999999999998875432 124789999
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 251 ~gg 253 (257)
T PRK07067 251 DGG 253 (257)
T ss_pred cCC
Confidence 877
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-16 Score=150.38 Aligned_cols=224 Identities=11% Similarity=0.041 Sum_probs=141.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+++++|||||||||++++++|++.|+ +|+++.|+... ..+.+...+.. . .....++. |++ +
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~---~V~~~~r~~~~--~~~~~~~~l~~----~-~~~~~~~~~D~~------~ 67 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA---HVVVNYRQKAP--RANKVVAEIEA----A-GGRASAVGADLT------D 67 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC---EEEEEeCCchH--hHHHHHHHHHh----c-CCceEEEEcCCC------C
Confidence 4578999999999999999999999876 57778886421 11122111110 0 01122333 887 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCCcccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRKNIEE 244 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i~E 244 (545)
.+++..+++ ++|+|||+|+.... ...+...+++|+.|+.++++.+.+. ....++|++||..+..... .+
T Consensus 68 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~--~~ 145 (248)
T PRK07806 68 EESVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT--VK 145 (248)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc--cc
Confidence 555555443 68999999986421 1234556789999999999999863 2235899999964421100 00
Q ss_pred cccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCC
Q psy16252 245 IIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEP 319 (545)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~ 319 (545)
. . .....|+.||+.+|.+++..+ .++++++++||.+-++....
T Consensus 146 ~---~-----------------------------~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~ 193 (248)
T PRK07806 146 T---M-----------------------------PEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTAT 193 (248)
T ss_pred C---C-----------------------------ccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhh
Confidence 0 0 001579999999999998864 67999999998775542110
Q ss_pred CCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 320 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+......+... ........+++++|+|++++.++..... .+++|+++++
T Consensus 194 -------------~~~~~~~~~~~---~~~~~~~~~~~~~dva~~~~~l~~~~~~-------~g~~~~i~~~ 242 (248)
T PRK07806 194 -------------LLNRLNPGAIE---ARREAAGKLYTVSEFAAEVARAVTAPVP-------SGHIEYVGGA 242 (248)
T ss_pred -------------hhccCCHHHHH---HHHhhhcccCCHHHHHHHHHHHhhcccc-------CccEEEecCc
Confidence 00000000000 0001123689999999999999886543 4889999987
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=147.97 Aligned_cols=218 Identities=15% Similarity=0.112 Sum_probs=140.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~l 170 (545)
+++++|+||||||+||+++++.|+++|+ +|.++ .|... ++..... .+.. ....++. |++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~---~v~i~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~---- 66 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGA---LVAIHYGRNKQ------AADETIR----EIESNGGKAFLIEADLN---- 66 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCHH------HHHHHHH----HHHhcCCcEEEEEcCcC----
Confidence 3468999999999999999999999875 45544 45421 1211111 1111 1223344 887
Q ss_pred CCCHHHHHHHhc-------------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEE
Q psy16252 171 GLSPDDKRLVTS-------------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTY 229 (545)
Q Consensus 171 gl~~~~~~~l~~-------------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~ 229 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.++.++++.+... ....+||+
T Consensus 67 --d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~ 144 (254)
T PRK12746 67 --SIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVIN 144 (254)
T ss_pred --CHHHHHHHHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence 5555555444 58999999997421 2334667889999999999988763 23358999
Q ss_pred EeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCE
Q psy16252 230 VSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPV 304 (545)
Q Consensus 230 vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~ 304 (545)
+||..++... .....|+.||...|.+++..+ .++++
T Consensus 145 ~sS~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v 185 (254)
T PRK12746 145 ISSAEVRLGF---------------------------------------TGSIAYGLSKGALNTMTLPLAKHLGERGITV 185 (254)
T ss_pred ECCHHhcCCC---------------------------------------CCCcchHhhHHHHHHHHHHHHHHHhhcCcEE
Confidence 9998765321 111579999999999876654 57999
Q ss_pred EEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC
Q psy16252 305 CIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP 384 (545)
Q Consensus 305 ~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~ 384 (545)
++++||.+.++...... . ...+...... ......+++++|+|+++..++..... ...++
T Consensus 186 ~~v~pg~~~t~~~~~~~---~-----~~~~~~~~~~--------~~~~~~~~~~~dva~~~~~l~~~~~~-----~~~g~ 244 (254)
T PRK12746 186 NTIMPGYTKTDINAKLL---D-----DPEIRNFATN--------SSVFGRIGQVEDIADAVAFLASSDSR-----WVTGQ 244 (254)
T ss_pred EEEEECCccCcchhhhc---c-----ChhHHHHHHh--------cCCcCCCCCHHHHHHHHHHHcCcccC-----CcCCC
Confidence 99999999776322110 0 0111111111 11123567899999999887765321 12468
Q ss_pred EEEeecC
Q psy16252 385 IYNYVNS 391 (545)
Q Consensus 385 vy~i~~~ 391 (545)
+|++.++
T Consensus 245 ~~~i~~~ 251 (254)
T PRK12746 245 IIDVSGG 251 (254)
T ss_pred EEEeCCC
Confidence 9998764
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-15 Score=144.83 Aligned_cols=208 Identities=13% Similarity=0.078 Sum_probs=140.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++||||||||+||.++++.|+++|+ +|+++.|+.... .+.+.. +.....+++. |+. +
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~---~v~~~~r~~~~~--~~~~~~--------~~~~~~~~~~~D~~------~ 65 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGA---RVALIGRGAAPL--SQTLPG--------VPADALRIGGIDLV------D 65 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCC---eEEEEeCChHhH--HHHHHH--------HhhcCceEEEeecC------C
Confidence 4579999999999999999999999865 688898864321 111111 1112223333 776 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~v~ 236 (545)
.+++..+++ ++|+|||+|+.... .+.+...+++|+.++.++++++.. ..+.+++|++||..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~ 145 (239)
T PRK12828 66 PQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAAL 145 (239)
T ss_pred HHHHHHHHHHHHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhc
Confidence 455555443 68999999986431 244567789999999999988753 1257899999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.+|...+.+++..+ .++++.++|||.
T Consensus 146 ~~~~---------------------------------------~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~ 186 (239)
T PRK12828 146 KAGP---------------------------------------GMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSI 186 (239)
T ss_pred cCCC---------------------------------------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCc
Confidence 4321 11569999998888887654 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
++++..... . + ......+++++|+|+++..++..... ...+..+++.++
T Consensus 187 v~~~~~~~~---------------------~---~--~~~~~~~~~~~dva~~~~~~l~~~~~-----~~~g~~~~~~g~ 235 (239)
T PRK12828 187 IDTPPNRAD---------------------M---P--DADFSRWVTPEQIAAVIAFLLSDEAQ-----AITGASIPVDGG 235 (239)
T ss_pred ccCcchhhc---------------------C---C--chhhhcCCCHHHHHHHHHHHhCcccc-----cccceEEEecCC
Confidence 987621100 0 0 01122379999999999988875432 123677777765
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=145.60 Aligned_cols=218 Identities=11% Similarity=0.083 Sum_probs=140.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLGL 172 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lgl 172 (545)
.+++|+||||+|+||++++++|++.|+ +|++..|+.. +.+..... .++.. ...++. |++
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~---~v~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~D~~------ 66 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGS---LVVVNAKKRA-----EEMNETLK----MVKENGGEGIGVLADVS------ 66 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCCh-----HHHHHHHH----HHHHcCCeeEEEEeccC------
Confidence 468999999999999999999999876 5666665432 11111111 11111 112233 776
Q ss_pred CHHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEecccccc
Q psy16252 173 SPDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 173 ~~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~ 237 (545)
+.+++..++ .++|+|||+||.... .+.++..+++|+.++.++++++.+. ....+||++||..++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 146 (252)
T PRK06077 67 TREGCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR 146 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC
Confidence 344444443 368999999996321 2234677899999999999988753 1235899999987653
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVI 313 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~ 313 (545)
... ..+.|+.||...|.+++.++ +++.+.+++||.|.
T Consensus 147 ~~~---------------------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~ 187 (252)
T PRK06077 147 PAY---------------------------------------GLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVK 187 (252)
T ss_pred CCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCcc
Confidence 211 11679999999999998765 47899999999987
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
++.......+. +. ... .... .......+++++|+|++++.++..... .+++|++.++
T Consensus 188 t~~~~~~~~~~-~~--~~~---~~~~--------~~~~~~~~~~~~dva~~~~~~~~~~~~-------~g~~~~i~~g 244 (252)
T PRK06077 188 TKLGESLFKVL-GM--SEK---EFAE--------KFTLMGKILDPEEVAEFVAAILKIESI-------TGQVFVLDSG 244 (252)
T ss_pred ChHHHhhhhcc-cc--cHH---HHHH--------hcCcCCCCCCHHHHHHHHHHHhCcccc-------CCCeEEecCC
Confidence 65321110000 00 000 0000 011123689999999999999865433 4789999886
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=146.63 Aligned_cols=225 Identities=12% Similarity=0.051 Sum_probs=141.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++++++|||||+|+||++++++|+++|+ +|+++.|+... .+.+... .......++. |++ +
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~---~V~~~~r~~~~---~~~~~~~-------~~~~~~~~~~~D~~------~ 69 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA---RVHVCDVSEAA---LAATAAR-------LPGAKVTATVADVA------D 69 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHHH-------HhcCceEEEEccCC------C
Confidence 5679999999999999999999999876 68888886421 1111110 1101122333 777 4
Q ss_pred HHHHHHHh-------cCccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc---cCC-ceEEEEeccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC---KNL-KMFTYVSTAF 234 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~-~~~v~vSS~~ 234 (545)
++.+..++ .++|+|||+||... ..+.+...+++|+.++.++++.+... .+. ++++++||.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~ 149 (264)
T PRK12829 70 PAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVA 149 (264)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 45555444 37899999999761 12456788999999999998877431 233 5788888765
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... +....|+.+|...|.++...+ .+++++++||
T Consensus 150 ~~~~~---------------------------------------~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~p 190 (264)
T PRK12829 150 GRLGY---------------------------------------PGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILP 190 (264)
T ss_pred cccCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEec
Confidence 43111 011469999999999988765 5899999999
Q ss_pred ceeeccCCCCCCCCccC-c-cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 310 SIVISTWKEPIPGWIDN-L-YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
|.++++........... . ........... . ......+++++|+|+++..++..... ...++.|+
T Consensus 191 g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~d~a~~~~~l~~~~~~-----~~~g~~~~ 256 (264)
T PRK12829 191 GIVRGPRMRRVIEARAQQLGIGLDEMEQEYL----E-----KISLGRMVEPEDIAATALFLASPAAR-----YITGQAIS 256 (264)
T ss_pred CCcCChHHHHHhhhhhhccCCChhHHHHHHH----h-----cCCCCCCCCHHHHHHHHHHHcCcccc-----CccCcEEE
Confidence 99988743211000000 0 00000000000 0 01123589999999999888754221 12477899
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 257 i~~g 260 (264)
T PRK12829 257 VDGN 260 (264)
T ss_pred eCCC
Confidence 8886
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=139.99 Aligned_cols=254 Identities=17% Similarity=0.124 Sum_probs=178.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lgl~ 173 (545)
+|+.||||-||+-|++|++.|+..|+ .|+.+.|..+..+. .|+ .+... -.... ..++. |++ |
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY---~VhGi~Rrss~~n~-~ri-~L~~~----~~~~~~~l~l~~gDLt------D 66 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGY---EVHGIKRRSSSFNT-PRI-HLYED----PHLNDPRLHLHYGDLT------D 66 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCc---EEEEEeeccccCCc-ccc-eeccc----cccCCceeEEEecccc------c
Confidence 58999999999999999999999987 68899887554321 221 11110 00111 12222 777 5
Q ss_pred HHHHHHHhc--CccEEEEcccccc----chHHHHHHHHHhHHHHHHHHHHHHHccC-CceEEEEeccccccCCC--cccc
Q psy16252 174 PDDKRLVTS--KVNLVFHCAATLR----FDEELKEAIRTNMCATQTMLDLAKQCKN-LKMFTYVSTAFSNSYRK--NIEE 244 (545)
Q Consensus 174 ~~~~~~l~~--~vd~Vih~Aa~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~~~~v~vSS~~v~~~~~--~i~E 244 (545)
...+..+++ ..|-|+|+||... |..+ ....+++..||.+|+++.+..+. -.+|...||.--+|... +..|
T Consensus 67 ~~~l~r~l~~v~PdEIYNLaAQS~V~vSFe~P-~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E 145 (345)
T COG1089 67 SSNLLRILEEVQPDEIYNLAAQSHVGVSFEQP-EYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKE 145 (345)
T ss_pred hHHHHHHHHhcCchhheeccccccccccccCc-ceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCcccc
Confidence 567777776 5699999999864 4333 44558899999999999998633 46899999998887643 5556
Q ss_pred cccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCC
Q psy16252 245 IIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPG 322 (545)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g 322 (545)
..+..|- ++|+.+|..|--+...+. .|+-.|. |+.+ .+++|.-|
T Consensus 146 ~TPFyPr------------------------------SPYAvAKlYa~W~tvNYResYgl~Acn---GILF-NHESP~Rg 191 (345)
T COG1089 146 TTPFYPR------------------------------SPYAVAKLYAYWITVNYRESYGLFACN---GILF-NHESPLRG 191 (345)
T ss_pred CCCCCCC------------------------------CHHHHHHHHHHheeeehHhhcCceeec---ceee-cCCCCCCc
Confidence 5544442 789999999988887775 4553332 3333 34555443
Q ss_pred CccCccchHHHHHHHhcCceeE-EecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHH
Q psy16252 323 WIDNLYGPTGLVTGAQAGVVRT-FLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEF 401 (545)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el 401 (545)
-.---...+..+..+..|.... ..|+-+..+||-+..|-++++..++++... ..|.++++ +..|++|+
T Consensus 192 e~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwlmLQq~~P---------ddyViATg--~t~sVref 260 (345)
T COG1089 192 ETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWLMLQQEEP---------DDYVIATG--ETHSVREF 260 (345)
T ss_pred cceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHHHHHHHccCCC---------CceEEecC--ceeeHHHH
Confidence 2211122334445555565543 468889999999999999999999987754 79999999 88999999
Q ss_pred HHHHHHhhcc
Q psy16252 402 ITKSLKEGVK 411 (545)
Q Consensus 402 ~~~l~~~~~~ 411 (545)
++...+..|.
T Consensus 261 v~~Af~~~g~ 270 (345)
T COG1089 261 VELAFEMVGI 270 (345)
T ss_pred HHHHHHHcCc
Confidence 9999888774
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-15 Score=142.69 Aligned_cols=216 Identities=14% Similarity=0.123 Sum_probs=141.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++++++||||+|+||++++++|+++|+ .|+++.|... +..+.... .++.. ...++. |++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~---~v~~~~~~~~-----~~~~~~~~----~l~~~~~~~~~~~~D~~----- 66 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGA---KVVINYNSSK-----EAAENLVN----ELGKEGHDVYAVQADVS----- 66 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEcCCcH-----HHHHHHHH----HHHhcCCeEEEEECCCC-----
Confidence 3579999999999999999999999875 4555444321 11111111 11111 223334 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+.+..+++ .+|+|||+|+.... .+.++..+++|+.++.++++++... .+..++|++||.+
T Consensus 67 -~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 145 (247)
T PRK12935 67 -KVEDANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSII 145 (247)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchh
Confidence 4555555554 47999999997532 2566788899999999999988742 2346899999976
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+..... ....|+.||...|.+.+... .++++++++|
T Consensus 146 ~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~p 186 (247)
T PRK12935 146 GQAGGF---------------------------------------GQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICP 186 (247)
T ss_pred hcCCCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEe
Confidence 542210 11579999998888776654 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++.... . +.........+ .....+.+++|++++++.++..... ..+++||+.
T Consensus 187 g~v~t~~~~~-------~--~~~~~~~~~~~---------~~~~~~~~~edva~~~~~~~~~~~~------~~g~~~~i~ 242 (247)
T PRK12935 187 GFIDTEMVAE-------V--PEEVRQKIVAK---------IPKKRFGQADEIAKGVVYLCRDGAY------ITGQQLNIN 242 (247)
T ss_pred CCCcChhhhh-------c--cHHHHHHHHHh---------CCCCCCcCHHHHHHHHHHHcCcccC------ccCCEEEeC
Confidence 9986642111 0 11111111111 1123578999999999998764321 247899988
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 243 ~g 244 (247)
T PRK12935 243 GG 244 (247)
T ss_pred CC
Confidence 75
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-15 Score=142.75 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=141.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl~ 173 (545)
.|+|+||||+|+||++++++|++.|+ +|+++.|..... .+.... .++. .+..++. |++ +
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~---~vi~~~r~~~~~--~~~~~~-------~~~~~~~~~~~~~~D~~------~ 63 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF---DLAINDRPDDEE--LAATQQ-------ELRALGVEVIFFPADVA------D 63 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecCchhH--HHHHHH-------HHHhcCCceEEEEecCC------C
Confidence 37899999999999999999999865 678888764321 111111 1111 1233444 887 4
Q ss_pred HHHHHHHh-------cCccEEEEccccccc---------hHHHHHHHHHhHHHHHHHHHHHHHc----cC-----CceEE
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF---------DEELKEAIRTNMCATQTMLDLAKQC----KN-----LKMFT 228 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~---------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~-----~~~~v 228 (545)
.+++.+++ ..+|+|||+||.... .+.++..+++|+.++.++++.+... .+ ..+||
T Consensus 64 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv 143 (256)
T PRK12745 64 LSAHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIV 143 (256)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEE
Confidence 44544443 368999999986421 2556778999999999998887542 11 56799
Q ss_pred EEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCC
Q psy16252 229 YVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFP 303 (545)
Q Consensus 229 ~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~ 303 (545)
++||..+..... ....|+.||+..|.+++.++ .+++
T Consensus 144 ~~sS~~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~ 184 (256)
T PRK12745 144 FVSSVNAIMVSP---------------------------------------NRGEYCISKAGLSMAAQLFAARLAEEGIG 184 (256)
T ss_pred EECChhhccCCC---------------------------------------CCcccHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 999987643211 12579999999999988775 5899
Q ss_pred EEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCC
Q psy16252 304 VCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCL 383 (545)
Q Consensus 304 ~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~ 383 (545)
++++|||.+.++...+. . .........+.. ....+.+++|+++++..++..... ...+
T Consensus 185 v~~i~pg~v~t~~~~~~---~------~~~~~~~~~~~~--------~~~~~~~~~d~a~~i~~l~~~~~~-----~~~G 242 (256)
T PRK12745 185 VYEVRPGLIKTDMTAPV---T------AKYDALIAKGLV--------PMPRWGEPEDVARAVAALASGDLP-----YSTG 242 (256)
T ss_pred EEEEecCCCcCcccccc---c------hhHHhhhhhcCC--------CcCCCcCHHHHHHHHHHHhCCccc-----ccCC
Confidence 99999999987532211 1 111111111111 123477999999999887754322 2247
Q ss_pred CEEEeecC
Q psy16252 384 PIYNYVNS 391 (545)
Q Consensus 384 ~vy~i~~~ 391 (545)
.+|++.++
T Consensus 243 ~~~~i~gg 250 (256)
T PRK12745 243 QAIHVDGG 250 (256)
T ss_pred CEEEECCC
Confidence 89999876
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-15 Score=144.48 Aligned_cols=223 Identities=11% Similarity=0.071 Sum_probs=142.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
+++++|||||||+||++++++|++.|+ +|+++.|+... .+.+...+. . ...+..++. |++ +.
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~---~v~~~~r~~~~---~~~~~~~~~---~--~~~~~~~~~~d~~------~~ 64 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA---KVAVFDLNREA---AEKVAADIR---A--KGGNAQAFACDIT------DR 64 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEecCCHHH---HHHHHHHHH---h--cCCcEEEEEcCCC------CH
Confidence 478999999999999999999999875 68888776421 111211110 0 011233334 777 45
Q ss_pred HHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~ 237 (545)
++++.+++ ++|+|||+|+.... .+.++..+++|+.++.++++.+... .+.+++|++||..++.
T Consensus 65 ~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~ 144 (250)
T TIGR03206 65 DSVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARV 144 (250)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhcc
Confidence 55555543 68999999986421 2345677899999999998887531 2457899999987654
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
... ....|+.+|+..+.+++.++ .+++++++|||.+
T Consensus 145 ~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~ 185 (250)
T TIGR03206 145 GSS---------------------------------------GEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPT 185 (250)
T ss_pred CCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcc
Confidence 321 11579999998888887765 4899999999999
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+++......++. ..+..+...+.... + ...+...+|+|+++..++..... ...++++++.++
T Consensus 186 ~~~~~~~~~~~~---~~~~~~~~~~~~~~-~--------~~~~~~~~dva~~~~~l~~~~~~-----~~~g~~~~~~~g 247 (250)
T TIGR03206 186 DTALLDDICGGA---ENPEKLREAFTRAI-P--------LGRLGQPDDLPGAILFFSSDDAS-----FITGQVLSVSGG 247 (250)
T ss_pred cchhHHhhhhcc---CChHHHHHHHHhcC-C--------ccCCcCHHHHHHHHHHHcCcccC-----CCcCcEEEeCCC
Confidence 876322111111 11112222222111 1 11245678999999998765432 224688888764
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=146.79 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=113.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++++|+||||||+||++++++|++.|+ +|+++.|+.. ++... ......++. |++ +.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~~------~l~~~--------~~~~~~~~~~Dv~------~~ 58 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY---TVYGAARRVD------KMEDL--------ASLGVHPLSLDVT------DE 58 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHH--------HhCCCeEEEeeCC------CH
Confidence 468999999999999999999999875 6888888642 22211 112334444 887 55
Q ss_pred HHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHH----HHHHccCCceEEEEeccccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLD----LAKQCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~----~a~~~~~~~~~v~vSS~~v~ 236 (545)
+++..+++ ++|+|||+||.... .+.++..+++|+.|+..+++ .+++. +..++|++||.+..
T Consensus 59 ~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS~~~~ 137 (273)
T PRK06182 59 ASIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQ-RSGRIINISSMGGK 137 (273)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcchhhc
Confidence 66666554 78999999997532 24567788999999655554 55554 56789999997643
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||...+.+.+..+ .+++++++|||.
T Consensus 138 ~~~---------------------------------------~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~ 178 (273)
T PRK06182 138 IYT---------------------------------------PLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGG 178 (273)
T ss_pred CCC---------------------------------------CCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC
Confidence 211 112569999999999876443 689999999999
Q ss_pred eeccC
Q psy16252 312 VISTW 316 (545)
Q Consensus 312 i~g~~ 316 (545)
|.++.
T Consensus 179 v~t~~ 183 (273)
T PRK06182 179 IKTEW 183 (273)
T ss_pred ccccc
Confidence 97753
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=146.04 Aligned_cols=218 Identities=14% Similarity=0.103 Sum_probs=144.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++.... ..++.. ...++. |++
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~----~~i~~~~~~~~~~~~D~~----- 69 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA---EVILNGRDPA------KLAAAA----ESLKGQGLSAHALAFDVT----- 69 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC---EEEEEeCCHH------HHHHHH----HHHHhcCceEEEEEccCC-----
Confidence 4689999999999999999999999876 6888888632 121111 111111 122333 777
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+++..+++ .+|+|||+||... ..+.++..+++|+.++.++++++.+. .+..++|++||..
T Consensus 70 -~~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~ 148 (255)
T PRK07523 70 -DHDAVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQ 148 (255)
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccch
Confidence 5556666554 4799999999753 13445778899999999999988752 2457899999975
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... .....|+.+|...|.+++.++ .+++++++||
T Consensus 149 ~~~~~---------------------------------------~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~p 189 (255)
T PRK07523 149 SALAR---------------------------------------PGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAP 189 (255)
T ss_pred hccCC---------------------------------------CCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEE
Confidence 43211 111579999999999988764 6899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.+.++..... .....+...+... .....+..++|+|++++.++..... .-.+.++++.
T Consensus 190 g~~~t~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~i~~~ 248 (255)
T PRK07523 190 GYFDTPLNAAL-------VADPEFSAWLEKR---------TPAGRWGKVEELVGACVFLASDASS-----FVNGHVLYVD 248 (255)
T ss_pred CcccCchhhhh-------ccCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCchhc-----CccCcEEEEC
Confidence 99988642211 0001111111111 1123467799999999988765332 1236788887
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 249 gg 250 (255)
T PRK07523 249 GG 250 (255)
T ss_pred CC
Confidence 76
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-15 Score=141.57 Aligned_cols=215 Identities=13% Similarity=0.115 Sum_probs=141.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLGL 172 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lgl 172 (545)
.+++|+||||+|++|+++++.|+++|+ +|+++.|++... +.+. ..++.. ...++. |+.
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~---~v~~~~r~~~~~---~~~~-------~~~~~~~~~~~~~~~D~~------ 64 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA---KVVIYDSNEEAA---EALA-------AELRAAGGEARVLVFDVS------ 64 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCChhHH---HHHH-------HHHHhcCCceEEEEccCC------
Confidence 468999999999999999999999876 588888874321 1111 111111 122333 777
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEecccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAFS 235 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~v 235 (545)
+++++..+++ .+|+|||+||.... .+.+...++.|+.++.++++.+.. ..+.++||++||...
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~ 144 (246)
T PRK05653 65 DEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSG 144 (246)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHh
Confidence 4445544443 46999999987532 234567789999999999988853 125689999999865
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.+|...|.+++.+. .+++++++|||
T Consensus 145 ~~~~---------------------------------------~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg 185 (246)
T PRK05653 145 VTGN---------------------------------------PGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPG 185 (246)
T ss_pred ccCC---------------------------------------CCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeC
Confidence 3211 111579999998888877754 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.+.++....+ .......... . .....+++++|+++++..++..... ...+.+|++.+
T Consensus 186 ~~~~~~~~~~---------~~~~~~~~~~-~--------~~~~~~~~~~dva~~~~~~~~~~~~-----~~~g~~~~~~g 242 (246)
T PRK05653 186 FIDTDMTEGL---------PEEVKAEILK-E--------IPLGRLGQPEEVANAVAFLASDAAS-----YITGQVIPVNG 242 (246)
T ss_pred CcCCcchhhh---------hHHHHHHHHh-c--------CCCCCCcCHHHHHHHHHHHcCchhc-----CccCCEEEeCC
Confidence 9988642210 0111111111 1 1124578889999999998764322 12478898887
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 243 g 243 (246)
T PRK05653 243 G 243 (246)
T ss_pred C
Confidence 6
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=140.46 Aligned_cols=222 Identities=13% Similarity=0.084 Sum_probs=142.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++++||||+|+||++|+++|++.|+ +|+++.|+... .......+. ......++. |++ +
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~~~------~~~~~~~~~---~~~~~~~~~~D~~------~ 64 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA---RVVVADRDAEA------AERVAAAIA---AGGRAFARQGDVG------S 64 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC---eEEEecCCHHH------HHHHHHHHh---cCCeEEEEEcCCC------C
Confidence 3579999999999999999999999875 68888886421 111111110 011223333 877 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v 235 (545)
.+++.++++ ++|+|||+|+... ..+.++..+++|+.++.++.+.+. +. +.++|+++||..+
T Consensus 65 ~~~~~~~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS~~~ 143 (252)
T PRK06138 65 AEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQ-GGGSIVNTASQLA 143 (252)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhc-CCeEEEEECChhh
Confidence 556655543 6899999999753 124456778999999988777653 33 5679999999865
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... ...+.|+.+|...+.+++.++ .+++++++|||
T Consensus 144 ~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg 184 (252)
T PRK06138 144 LAGG---------------------------------------RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPG 184 (252)
T ss_pred ccCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEEC
Confidence 4221 112679999999999988765 48999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.+.++.......+.. .+..+ .....+ ......+++++|++++++.++..... ...+..+.+.+
T Consensus 185 ~~~t~~~~~~~~~~~---~~~~~-~~~~~~--------~~~~~~~~~~~d~a~~~~~l~~~~~~-----~~~g~~~~~~~ 247 (252)
T PRK06138 185 TIDTPYFRRIFARHA---DPEAL-REALRA--------RHPMNRFGTAEEVAQAALFLASDESS-----FATGTTLVVDG 247 (252)
T ss_pred CccCcchhhhhcccc---ChHHH-HHHHHh--------cCCCCCCcCHHHHHHHHHHHcCchhc-----CccCCEEEECC
Confidence 998874322111111 01111 111110 01122378899999999998876542 12356666654
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 248 g 248 (252)
T PRK06138 248 G 248 (252)
T ss_pred C
Confidence 3
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-15 Score=145.66 Aligned_cols=209 Identities=11% Similarity=0.094 Sum_probs=133.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lg 171 (545)
+.+|+++||||+|+||++++++|++.|. +|++..|+.. ++.+... .++... ..++. |++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~---~Vv~~~r~~~------~l~~~~~----~l~~~~~~~~~~~~Dv~----- 65 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA---RVVLGDVDKP------GLRQAVN----HLRAEGFDVHGVMCDVR----- 65 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCeEEEEeCCCC-----
Confidence 4689999999999999999999999875 5777777632 2222111 111111 22333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~ 233 (545)
+.+++..+++ .+|+|||+||... ..+.++..+++|+.|+.++++.+.. .+...++|++||.
T Consensus 66 -d~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~ 144 (275)
T PRK05876 66 -HREEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASF 144 (275)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCh
Confidence 4555655544 5799999999642 1245677889999999999988753 2124689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHH----HHHHHHHhc-cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAA----AEQLLCEEA-QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~----aE~~~~~~~-~~l~~~i~R 308 (545)
.+.... .....|+.||.. +|.+..++. .++++++++
T Consensus 145 ~~~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~ 185 (275)
T PRK05876 145 AGLVPN---------------------------------------AGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLC 185 (275)
T ss_pred hhccCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEE
Confidence 765321 112679999996 555555554 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHH-HHhcCceeEEecCCCCcccceehHHHHHHHHhcccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVT-GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 371 (545)
||.|.++...... .... ...........+......++++++|||++++.++..
T Consensus 186 Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ai~~ 239 (275)
T PRK05876 186 PMVVETNLVANSE----------RIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILA 239 (275)
T ss_pred eCccccccccchh----------hhcCccccccccccccccccccccCCCHHHHHHHHHHHHHc
Confidence 9998775321100 0000 000000001122223456789999999999998753
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=139.71 Aligned_cols=225 Identities=15% Similarity=0.138 Sum_probs=137.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||||+||+++++.|++.|+ +|+.+.|+... ++.....+-.........++. |++ +
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~---~v~~~~r~~~~------~~~~~~~l~~~~~~~~~~~~~~Dl~------d 66 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG---IVIAADIDKEA------LNELLESLGKEFKSKKLSLVELDIT------D 66 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecChHH------HHHHHHHHHhhcCCCceeEEEecCC------C
Confidence 4579999999999999999999999876 57777776422 111111110000111122334 887 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc----------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF----------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~----------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
++++..+++ .+|+|||||+.... .+.+...+++|+.++..+++++... .+..++|++||.
T Consensus 67 ~~~~~~~~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 146 (256)
T PRK09186 67 QESLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSI 146 (256)
T ss_pred HHHHHHHHHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEech
Confidence 556665554 38999999974311 1345677889998887776655431 245799999998
Q ss_pred ccccCCC-cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 234 FSNSYRK-NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 234 ~v~~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
++..... .+.+.. ....+..|+.||...|.+.+..+ .+++++++
T Consensus 147 ~~~~~~~~~~~~~~------------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i 196 (256)
T PRK09186 147 YGVVAPKFEIYEGT------------------------------SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCV 196 (256)
T ss_pred hhhccccchhcccc------------------------------ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEE
Confidence 7543211 100100 00112469999999998886544 57999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
+||.+.+... ..+...... . .....+++++|+|++++.++..... ...+.+++
T Consensus 197 ~Pg~~~~~~~-------------~~~~~~~~~-~--------~~~~~~~~~~dva~~~~~l~~~~~~-----~~~g~~~~ 249 (256)
T PRK09186 197 SPGGILDNQP-------------EAFLNAYKK-C--------CNGKGMLDPDDICGTLVFLLSDQSK-----YITGQNII 249 (256)
T ss_pred ecccccCCCC-------------HHHHHHHHh-c--------CCccCCCCHHHhhhhHhheeccccc-----cccCceEE
Confidence 9998765310 112111111 1 1123478999999999999875432 12356666
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 250 ~~~g 253 (256)
T PRK09186 250 VDDG 253 (256)
T ss_pred ecCC
Confidence 6554
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.6e-15 Score=145.13 Aligned_cols=222 Identities=12% Similarity=0.053 Sum_probs=143.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+||||||+|+||+++++.|++.|+ +|++..|+..... .+.+...+.. . .....++. |++ +
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~---~V~i~~~~~~~~~-~~~~~~~~~~----~-~~~~~~~~~Dl~------~ 117 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA---DIALNYLPEEEQD-AAEVVQLIQA----E-GRKAVALPGDLK------D 117 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC---EEEEEeCCcchHH-HHHHHHHHHH----c-CCeEEEEecCCC------C
Confidence 5679999999999999999999999876 4655555432211 1111111110 0 01122333 887 4
Q ss_pred HHHHHHHh-------cCccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEecccccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~ 237 (545)
.+++++++ .++|+|||+||... ..+.++..+++|+.|+.++++.+... ..-.++|++||..++.
T Consensus 118 ~~~v~~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~ 197 (300)
T PRK06128 118 EAFCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQ 197 (300)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccC
Confidence 45555444 36899999999632 13567888999999999999998752 1225899999987664
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
... ....|+.||...+.+++.++ .|+++++++||.|
T Consensus 198 ~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i 238 (300)
T PRK06128 198 PSP---------------------------------------TLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPV 238 (300)
T ss_pred CCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcC
Confidence 321 11569999999999988765 5899999999999
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++..... .. .......+... .....+...+|+|.+++.++..... ...+++|++.++
T Consensus 239 ~t~~~~~~-----~~--~~~~~~~~~~~---------~p~~r~~~p~dva~~~~~l~s~~~~-----~~~G~~~~v~gg 296 (300)
T PRK06128 239 WTPLQPSG-----GQ--PPEKIPDFGSE---------TPMKRPGQPVEMAPLYVLLASQESS-----YVTGEVFGVTGG 296 (300)
T ss_pred cCCCcccC-----CC--CHHHHHHHhcC---------CCCCCCcCHHHHHHHHHHHhCcccc-----CccCcEEeeCCC
Confidence 88642210 00 01122111111 1122466889999999887654321 124788998876
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-15 Score=143.40 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=116.8
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++++|+||||||+||++++++|++.|+ +|+++.|+....... ....++. |++ +.
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~---~V~~~~r~~~~~~~~----------------~~~~~~~~D~~------d~ 57 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY---RVFGTSRNPARAAPI----------------PGVELLELDVT------DD 57 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCChhhcccc----------------CCCeeEEeecC------CH
Confidence 368899999999999999999999875 688888874322110 1233344 887 55
Q ss_pred HHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEeccccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v~ 236 (545)
+++..+++ .+|+||||||.... .+.++..+++|+.|+.++++.+. +. +.+++|++||.++.
T Consensus 58 ~~~~~~~~~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~isS~~~~ 136 (270)
T PRK06179 58 ASVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQ-GSGRIINISSVLGF 136 (270)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEECCcccc
Confidence 66666665 47999999997532 24567889999999999988753 33 67899999998654
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..|.+++..+ .++++++++||.
T Consensus 137 ~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~ 177 (270)
T PRK06179 137 LPA---------------------------------------PYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAY 177 (270)
T ss_pred CCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCC
Confidence 321 112579999999999887754 689999999999
Q ss_pred eeccC
Q psy16252 312 VISTW 316 (545)
Q Consensus 312 i~g~~ 316 (545)
+.++.
T Consensus 178 ~~t~~ 182 (270)
T PRK06179 178 TKTNF 182 (270)
T ss_pred ccccc
Confidence 98764
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=144.15 Aligned_cols=217 Identities=18% Similarity=0.087 Sum_probs=140.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEE-EecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYV-IVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~-l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
.+++++||||||+||++++++|++.|+ +|++ ..|+.. ..+... ..++.. ...++. |++
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~---~v~~~~~r~~~------~~~~~~----~~~~~~~~~~~~~~~D~~----- 64 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY---DIAVNYARSRK------AAEETA----EEIEALGRKALAVKANVG----- 64 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCHH------HHHHHH----HHHHhcCCeEEEEEcCCC-----
Confidence 468999999999999999999999876 4444 456532 111111 111111 223333 877
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+++++..+++ .+|+|||+||.... .+.+...+++|+.++.++++++... .+.++||++||..
T Consensus 65 -~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~ 143 (250)
T PRK08063 65 -DVEKIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLG 143 (250)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchh
Confidence 5555655554 57999999986431 2344567889999999999888752 2456999999976
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..|.+++..+ .++++++++|
T Consensus 144 ~~~~~---------------------------------------~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~p 184 (250)
T PRK08063 144 SIRYL---------------------------------------ENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSG 184 (250)
T ss_pred hccCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEec
Confidence 54221 011579999999999998764 6799999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.+.++.....+++ ..+...... .. ....+++++|+|++++.++..... ...++.+++.
T Consensus 185 g~v~t~~~~~~~~~-------~~~~~~~~~-~~--------~~~~~~~~~dva~~~~~~~~~~~~-----~~~g~~~~~~ 243 (250)
T PRK08063 185 GAVDTDALKHFPNR-------EELLEDARA-KT--------PAGRMVEPEDVANAVLFLCSPEAD-----MIRGQTIIVD 243 (250)
T ss_pred CcccCchhhhccCc-------hHHHHHHhc-CC--------CCCCCcCHHHHHHHHHHHcCchhc-----CccCCEEEEC
Confidence 99976532211110 111111111 10 112478999999999988865432 1246788877
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 244 gg 245 (250)
T PRK08063 244 GG 245 (250)
T ss_pred CC
Confidence 65
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.5e-15 Score=142.87 Aligned_cols=221 Identities=10% Similarity=0.054 Sum_probs=136.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|+ +|+++.|+.. . ..+.. .+... ...++. |++
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~---~v~~~~r~~~---~-~~~~~-------~~~~~~~~~~~~~~D~~----- 66 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGA---RVVLVDRSEL---V-HEVAA-------ELRAAGGEALALTADLE----- 66 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCchH---H-HHHHH-------HHHhcCCeEEEEEEeCC-----
Confidence 5679999999999999999999999875 6777777531 1 11111 11111 122333 877
Q ss_pred CCHHHHHHHh-------cCccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEec
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS 232 (545)
+.+++..++ ..+|++||+||... ..+.++..+++|+.++..+++.+. +. +..++|++||
T Consensus 67 -~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~~sS 144 (260)
T PRK12823 67 -TYAGAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQ-GGGAIVNVSS 144 (260)
T ss_pred -CHHHHHHHHHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEcC
Confidence 344444433 36899999998431 124456778999998886665554 33 4568999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..+++.. ...|+.||+..|.+++.++ .+++++++
T Consensus 145 ~~~~~~~-----------------------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v 183 (260)
T PRK12823 145 IATRGIN-----------------------------------------RVPYSAAKGGVNALTASLAFEYAEHGIRVNAV 183 (260)
T ss_pred ccccCCC-----------------------------------------CCccHHHHHHHHHHHHHHHHHhcccCcEEEEE
Confidence 8654311 1469999999999988765 58999999
Q ss_pred ccceeeccCCCCCCC---CccCcc-chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCC
Q psy16252 308 RPSIVISTWKEPIPG---WIDNLY-GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCL 383 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g---~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~ 383 (545)
+||.|+++...-... +..... ....+......+. ...-+..++|+|++++.++..... ...+
T Consensus 184 ~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~s~~~~-----~~~g 249 (260)
T PRK12823 184 APGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSS---------LMKRYGTIDEQVAAILFLASDEAS-----YITG 249 (260)
T ss_pred ecCccCCcchhhHHhhccccccccccHHHHHHHHhccC---------CcccCCCHHHHHHHHHHHcCcccc-----cccC
Confidence 999999863110000 000000 0111111111111 111244689999999888754321 1246
Q ss_pred CEEEeecC
Q psy16252 384 PIYNYVNS 391 (545)
Q Consensus 384 ~vy~i~~~ 391 (545)
.++++.++
T Consensus 250 ~~~~v~gg 257 (260)
T PRK12823 250 TVLPVGGG 257 (260)
T ss_pred cEEeecCC
Confidence 78888765
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=140.64 Aligned_cols=220 Identities=13% Similarity=0.062 Sum_probs=142.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh-hcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK-FTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~-~~~~~~~~-Dl~~~~lgl 172 (545)
+++++|+||||||+||.+++++|++.|+ +|+++.|+... +.... ..+. .....++. |+.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~---~V~~~~r~~~~------~~~~~----~~~~~~~~~~~~~~D~~------ 63 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGA---RVVVTDRNEEA------AERVA----AEILAGGRAIAVAADVS------ 63 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHH------HHHHH----HHHhcCCeEEEEECCCC------
Confidence 4578999999999999999999999875 58888997532 11111 1111 11122333 777
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+++..+++ .+|+|||+|+... ..+.++..+++|+.++.++++.+... .+.++||++||..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 143 (251)
T PRK07231 64 DEADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTA 143 (251)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChh
Confidence 5566666554 5799999999732 12456778899999988888776641 2567899999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+..... ....|+.||...+.+.+.++ .++++++++|
T Consensus 144 ~~~~~~---------------------------------------~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~p 184 (251)
T PRK07231 144 GLRPRP---------------------------------------GLGWYNASKGAVITLTKALAAELGPDKIRVNAVAP 184 (251)
T ss_pred hcCCCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEE
Confidence 754321 11579999999888887764 4899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.+.++...... ... . ......... ......+++++|+|.+++.++..... ...+..+.+.
T Consensus 185 g~~~t~~~~~~~---~~~-~-~~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~~~~~~-----~~~g~~~~~~ 245 (251)
T PRK07231 185 VVVETGLLEAFM---GEP-T-PENRAKFLA---------TIPLGRLGTPEDIANAALFLASDEAS-----WITGVTLVVD 245 (251)
T ss_pred CccCCCcchhhh---ccc-C-hHHHHHHhc---------CCCCCCCcCHHHHHHHHHHHhCcccc-----CCCCCeEEEC
Confidence 998664321110 000 0 011111111 11123578999999999998865432 1235666666
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 246 gg 247 (251)
T PRK07231 246 GG 247 (251)
T ss_pred CC
Confidence 54
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-15 Score=143.49 Aligned_cols=224 Identities=12% Similarity=0.088 Sum_probs=143.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++++||||||+||++++++|++.|. +|+++.|+.... +....+ .. ......++. |++ +
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~---~v~~~~r~~~~~---~~~~~~-~~-----~~~~~~~~~~D~~------~ 66 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA---IPVIFGRSAPDD---EFAEEL-RA-----LQPRAEFVQVDLT------D 66 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC---cEEEEcCChhhH---HHHHHH-Hh-----cCCceEEEEccCC------C
Confidence 4679999999999999999999999875 577778875321 111111 00 011223334 887 4
Q ss_pred HHHHHHHhc-------CccEEEEcccccc------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccC
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~ 238 (545)
.+++..+++ .+|+|||+||... ..+.++..+++|+.++.++.+.+... ....+|+++||..+...
T Consensus 67 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~ 146 (258)
T PRK08628 67 DAQCRDAVEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTG 146 (258)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccC
Confidence 455555543 6899999999532 12556778899999999998887642 12368999999866432
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.||+..|.+++..+ .+++++.++||.|.
T Consensus 147 ~---------------------------------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~ 187 (258)
T PRK08628 147 Q---------------------------------------GGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVM 187 (258)
T ss_pred C---------------------------------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccC
Confidence 1 111679999999999998764 58999999999998
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
++... .|...+..+......... ..+ . ...++.++|+|++++.++..... ...+..+.+.++
T Consensus 188 t~~~~---~~~~~~~~~~~~~~~~~~-~~~----~---~~~~~~~~dva~~~~~l~~~~~~-----~~~g~~~~~~gg 249 (258)
T PRK08628 188 TPLYE---NWIATFDDPEAKLAAITA-KIP----L---GHRMTTAEEIADTAVFLLSERSS-----HTTGQWLFVDGG 249 (258)
T ss_pred CHHHH---HHhhhccCHHHHHHHHHh-cCC----c---cccCCCHHHHHHHHHHHhChhhc-----cccCceEEecCC
Confidence 86321 121111111111111111 000 0 12468889999999998876432 123567776554
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=141.13 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=141.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+.+|+||||||||+||++++++|+++|+ +|+++.|+.. .++... ..+.. .+..++. |++
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~----~~~~~~~~~~~~~~~D~~----- 64 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA---DVVLAARTAE------RLDEVA----AEIDDLGRRALAVPTDIT----- 64 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCCHH------HHHHHH----HHHHHhCCceEEEecCCC-----
Confidence 4579999999999999999999999876 6888888642 111111 11111 1223333 887
Q ss_pred CCHHHHHHHh-------cCccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~ 234 (545)
+.+++..++ .++|+|||+|+... ..+.++..+++|+.|+..+++++... ....+||++||..
T Consensus 65 -~~~~~~~~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~ 143 (258)
T PRK07890 65 -DEDQCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMV 143 (258)
T ss_pred -CHHHHHHHHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechh
Confidence 445554444 36799999998642 12556778999999999999998752 1225899999986
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... .....|+.+|...|.+++.++ .+++++++||
T Consensus 144 ~~~~~---------------------------------------~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~p 184 (258)
T PRK07890 144 LRHSQ---------------------------------------PKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAP 184 (258)
T ss_pred hccCC---------------------------------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeC
Confidence 54321 111679999999999998775 4899999999
Q ss_pred ceeeccCCCCCCCC-ccCc-cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 310 SIVISTWKEPIPGW-IDNL-YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 310 ~~i~g~~~~~~~g~-~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
|.|+++...+.... .... .....+....... .....+.+++|+|++++.++..... ...++++.
T Consensus 185 g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~dva~a~~~l~~~~~~-----~~~G~~i~ 250 (258)
T PRK07890 185 GYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN---------SDLKRLPTDDEVASAVLFLASDLAR-----AITGQTLD 250 (258)
T ss_pred CccCcHHHHHHhhhcccccCCCHHHHHHHHhhc---------CCccccCCHHHHHHHHHHHcCHhhh-----CccCcEEE
Confidence 99998742210000 0000 0001111111110 1122467899999999888764321 11355665
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 251 ~~gg 254 (258)
T PRK07890 251 VNCG 254 (258)
T ss_pred eCCc
Confidence 5543
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.4e-15 Score=141.50 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=143.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++++||||+|+||.++++.|++.|+ +|+++.|+.. .+...... . ...++. |++ +
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~---~V~~~~r~~~------~~~~~~~~----~---~~~~~~~D~~------~ 64 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA---RVVAAARNAA------ALDRLAGE----T---GCEPLRLDVG------D 64 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHH----h---CCeEEEecCC------C
Confidence 4579999999999999999999999875 6888888642 11111110 0 122333 776 4
Q ss_pred HHHHHHHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEeccccccCC
Q psy16252 174 PDDKRLVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 174 ~~~~~~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v~~~~ 239 (545)
.+.+..+++ .+|+|||+||.... .+.++..+++|+.++.++++++.+. +...+||++||...+...
T Consensus 65 ~~~v~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~ 144 (245)
T PRK07060 65 DAAIRAALAAAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL 144 (245)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC
Confidence 445555554 58999999997532 2456777889999999999888653 113689999998665321
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeec
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIS 314 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g 314 (545)
. ....|+.||...|.+++.++ .+++++.+|||.+.+
T Consensus 145 ~---------------------------------------~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~ 185 (245)
T PRK07060 145 P---------------------------------------DHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLT 185 (245)
T ss_pred C---------------------------------------CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCC
Confidence 1 11579999999999988765 479999999999988
Q ss_pred cCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 315 TWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+.... .|.+ +. ........ .....+++++|+|++++.++..... ...++++++.++
T Consensus 186 ~~~~~--~~~~----~~-~~~~~~~~---------~~~~~~~~~~d~a~~~~~l~~~~~~-----~~~G~~~~~~~g 241 (245)
T PRK07060 186 PMAAE--AWSD----PQ-KSGPMLAA---------IPLGRFAEVDDVAAPILFLLSDAAS-----MVSGVSLPVDGG 241 (245)
T ss_pred chhhh--hccC----HH-HHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccC-----CccCcEEeECCC
Confidence 64221 0111 01 11111110 1123488999999999998875432 224677777654
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=138.64 Aligned_cols=201 Identities=15% Similarity=0.165 Sum_probs=132.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+++||||+|+||+++++.|+++ + +|+++.|+... .+.+.. .. ....++. |++ +.+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~---~V~~~~r~~~~---~~~~~~-------~~--~~~~~~~~D~~------~~~ 60 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H---TLLLGGRPAER---LDELAA-------EL--PGATPFPVDLT------DPE 60 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C---CEEEEeCCHHH---HHHHHH-------Hh--ccceEEecCCC------CHH
Confidence 478999999999999999999987 4 68899987421 111111 00 1233344 777 566
Q ss_pred HHHHHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHH----HHHHHccCCceEEEEeccccccCCCc
Q psy16252 176 DKRLVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTML----DLAKQCKNLKMFTYVSTAFSNSYRKN 241 (545)
Q Consensus 176 ~~~~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll----~~a~~~~~~~~~v~vSS~~v~~~~~~ 241 (545)
++.++++ ++|+|||+|+.... .+.+...+++|+.+..++. +.+++. .+++|++||..+.....
T Consensus 61 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~v~~ss~~~~~~~~- 137 (227)
T PRK08219 61 AIAAAVEQLGRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA--HGHVVFINSGAGLRANP- 137 (227)
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEcchHhcCcCC-
Confidence 7777776 59999999997532 1345667889999855544 444443 46899999987653221
Q ss_pred ccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cC-CCEEEEccceeeccCC
Q psy16252 242 IEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QF-FPVCIFRPSIVISTWK 317 (545)
Q Consensus 242 i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~-l~~~i~Rp~~i~g~~~ 317 (545)
....|+.+|...|.+++..+ .+ +++..++||.+.++..
T Consensus 138 --------------------------------------~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~ 179 (227)
T PRK08219 138 --------------------------------------GWGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQ 179 (227)
T ss_pred --------------------------------------CCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHh
Confidence 11579999999998887654 34 8899999887654311
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
. .+... .+. ......+++++|+|++++.++..+.. +.+|++.-
T Consensus 180 ~-------------~~~~~--~~~-------~~~~~~~~~~~dva~~~~~~l~~~~~--------~~~~~~~~ 222 (227)
T PRK08219 180 R-------------GLVAQ--EGG-------EYDPERYLRPETVAKAVRFAVDAPPD--------AHITEVVV 222 (227)
T ss_pred h-------------hhhhh--hcc-------ccCCCCCCCHHHHHHHHHHHHcCCCC--------CccceEEE
Confidence 0 00000 010 11124579999999999999876544 67777764
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=141.34 Aligned_cols=228 Identities=11% Similarity=0.014 Sum_probs=139.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++|+||||+|+||.++++.|++.|+ +|+++.|+... .+.+...+. .........++. |++ +.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~---~vi~~~r~~~~---~~~~~~~~~---~~~~~~~~~~~~~D~~------~~~ 66 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY---RVAVADINSEK---AANVAQEIN---AEYGEGMAYGFGADAT------SEQ 66 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHHH---HHHHHHHHH---HhcCCceeEEEEccCC------CHH
Confidence 57899999999999999999999865 67778776421 111111100 000001233344 887 444
Q ss_pred HHHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cC-CceEEEEecccccc
Q psy16252 176 DKRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KN-LKMFTYVSTAFSNS 237 (545)
Q Consensus 176 ~~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~-~~~~v~vSS~~v~~ 237 (545)
++..++ ..+|+|||+||... ..+.++..+++|+.|+.++++.+... .+ -.++|++||.....
T Consensus 67 ~i~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~ 146 (259)
T PRK12384 67 SVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKV 146 (259)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCccccc
Confidence 554443 36799999998643 12456778899999998888877542 23 35899999965321
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||+..+.+++.++ .++++.++|||.+
T Consensus 147 ~~---------------------------------------~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~ 187 (259)
T PRK12384 147 GS---------------------------------------KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNL 187 (259)
T ss_pred CC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCc
Confidence 10 111579999999888876654 7899999999988
Q ss_pred eccCCCCCCCCccCccchHHHHHHHh--cCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQ--AGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
+++.... ... ..+..... .+.......+......+++++||+++++.++..... ...+.+|++.+
T Consensus 188 ~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~-----~~~G~~~~v~~ 254 (259)
T PRK12384 188 LKSPMFQ------SLL--PQYAKKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASPKAS-----YCTGQSINVTG 254 (259)
T ss_pred ccchhhh------hhh--HHHHHhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCcccc-----cccCceEEEcC
Confidence 7652110 000 00000000 000000011222345678999999999987654321 12478899987
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 255 g 255 (259)
T PRK12384 255 G 255 (259)
T ss_pred C
Confidence 6
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-14 Score=134.66 Aligned_cols=216 Identities=13% Similarity=0.071 Sum_probs=140.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl 172 (545)
.+|+++||||+|+||.++++.|+++|+ .|+++.|..... .+....... .+.. ....++. |+.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~---~v~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~Dl~------ 69 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA---DVIVLDIHPMRG--RAEADAVAA----GIEAAGGKALGLAFDVR------ 69 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEcCccccc--HHHHHHHHH----HHHhcCCcEEEEEccCC------
Confidence 468999999999999999999999876 577766643221 112222111 1111 1223333 777
Q ss_pred CHHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH-----HccCCceEEEEecc
Q psy16252 173 SPDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK-----QCKNLKMFTYVSTA 233 (545)
Q Consensus 173 ~~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~-----~~~~~~~~v~vSS~ 233 (545)
+.+.+..++ ..+|+|||+||.... .+.+...+++|+.++.++++++. +. +.+++|++||.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~~sS~ 148 (249)
T PRK12827 70 DFAATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRAR-RGGRIVNIASV 148 (249)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-CCeEEEEECCc
Confidence 445555544 368999999997541 24467788999999999999987 32 56789999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
....... ....|+.+|+..+.+++.++ .+++++++|
T Consensus 149 ~~~~~~~---------------------------------------~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~ 189 (249)
T PRK12827 149 AGVRGNR---------------------------------------GQVNYAASKAGLIGLTKTLANELAPRGITVNAVA 189 (249)
T ss_pred hhcCCCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEE
Confidence 6653211 11579999999888887764 489999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.+.++..... . +. ...... .....+.+++|+|++++.++..... ...++.+++
T Consensus 190 pg~v~t~~~~~~-------~-~~---~~~~~~---------~~~~~~~~~~~va~~~~~l~~~~~~-----~~~g~~~~~ 244 (249)
T PRK12827 190 PGAINTPMADNA-------A-PT---EHLLNP---------VPVQRLGEPDEVAALVAFLVSDAAS-----YVTGQVIPV 244 (249)
T ss_pred ECCcCCCccccc-------c-hH---HHHHhh---------CCCcCCcCHHHHHHHHHHHcCcccC-----CccCcEEEe
Confidence 999988632210 0 01 111110 0111245889999999888754322 123678888
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 245 ~~g 247 (249)
T PRK12827 245 DGG 247 (249)
T ss_pred CCC
Confidence 764
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-14 Score=134.92 Aligned_cols=217 Identities=12% Similarity=0.125 Sum_probs=138.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++++|+||||||+||+++++.|++.|+ +|+++.|..... .+.+.. .++. ....++. |++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~---~v~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~Dl~----- 65 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGA---NVVINYASSEAG--AEALVA-------EIGALGGKALAVQGDVS----- 65 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCchhH--HHHHHH-------HHHhcCCceEEEEcCCC-----
Confidence 3568999999999999999999999876 577777754311 111111 1111 1222333 777
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+.+..+++ ++|+|||+||.... .+.++..+++|+.++.++++.+... .+.++|+++||..
T Consensus 66 -~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~ 144 (248)
T PRK05557 66 -DAESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVV 144 (248)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence 4455554443 68999999987431 2345677899999999999888752 2456899999975
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... .....|+.+|...|.+++.++ .+++++++||
T Consensus 145 ~~~~~---------------------------------------~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~p 185 (248)
T PRK05557 145 GLMGN---------------------------------------PGQANYAASKAGVIGFTKSLARELASRGITVNAVAP 185 (248)
T ss_pred cCcCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEec
Confidence 43211 011679999999998877654 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.+.++...+. ...+......+. ....+.+++|+++++..++..... ...+++|++.
T Consensus 186 g~~~~~~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~-----~~~g~~~~i~ 242 (248)
T PRK05557 186 GFIETDMTDAL---------PEDVKEAILAQI---------PLGRLGQPEEIASAVAFLASDEAA-----YITGQTLHVN 242 (248)
T ss_pred CccCCcccccc---------ChHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCcccC-----CccccEEEec
Confidence 98755422111 011211111111 112357889999999887765221 1246889987
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 243 ~~ 244 (248)
T PRK05557 243 GG 244 (248)
T ss_pred CC
Confidence 64
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=139.27 Aligned_cols=201 Identities=14% Similarity=0.129 Sum_probs=132.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl~ 173 (545)
+++||||||+|+||.+++++|++.|+ +|+++.|+... .+.+.. .+.. .+..++. |+. +
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~---~Vi~~~r~~~~---~~~~~~-------~l~~~~~~~~~~~~Dl~------~ 61 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA---QLVLAARNETR---LASLAQ-------ELADHGGEALVVPTDVS------D 61 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHH-------HHHhcCCcEEEEEccCC------C
Confidence 36899999999999999999998865 68888886421 111111 1111 1222333 776 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~ 236 (545)
.+.+..+++ ++|+|||+||.... .+.+...+++|+.++.++++.+... .+..++|++||..++
T Consensus 62 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~ 141 (263)
T PRK06181 62 AEACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGL 141 (263)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccccc
Confidence 555555544 68999999987532 2235667899999999999988531 134689999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||...|.+.+... .++++++++||.
T Consensus 142 ~~~~---------------------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~ 182 (263)
T PRK06181 142 TGVP---------------------------------------TRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGF 182 (263)
T ss_pred CCCC---------------------------------------CccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCc
Confidence 3211 11579999999999887654 589999999998
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
|.++..... .. ..+... ...+....++++++|+|++++.++...
T Consensus 183 v~t~~~~~~-------~~--------~~~~~~--~~~~~~~~~~~~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 183 VATDIRKRA-------LD--------GDGKPL--GKSPMQESKIMSAEECAEAILPAIARR 226 (263)
T ss_pred cccCcchhh-------cc--------cccccc--ccccccccCCCCHHHHHHHHHHHhhCC
Confidence 876522110 00 001100 011122237899999999999998643
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=141.55 Aligned_cols=226 Identities=14% Similarity=0.041 Sum_probs=141.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl 172 (545)
+.+|+++||||+|+||++++++|++.|+ +|+++.|.... .+.+. ..+.. ....++. |++
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~---~v~~~~~~~~~---~~~~~-------~~~~~~~~~~~~~~Dl~------ 76 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGA---KVCIVDLQDDL---GQNVC-------DSLGGEPNVCFFHCDVT------ 76 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHHH---HHHHH-------HHhcCCCceEEEEeecC------
Confidence 5689999999999999999999999875 67777775321 11111 11111 1233444 887
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc---------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF---------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~---------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.+++.++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.+++++||.
T Consensus 77 d~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~ 156 (280)
T PLN02253 77 VEDDVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSV 156 (280)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecCh
Confidence 5556665554 68999999997421 2456788999999999999877642 123578999887
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
...... ..+..|+.||+..|.+.+.++ .++++.+++
T Consensus 157 ~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~ 197 (280)
T PLN02253 157 ASAIGG---------------------------------------LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVS 197 (280)
T ss_pred hhcccC---------------------------------------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEe
Confidence 653111 112579999999999998765 589999999
Q ss_pred cceeeccCCCC-CCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 309 PSIVISTWKEP-IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 309 p~~i~g~~~~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
||.|.++.... .+. . ......+..... ............+.++|+|++++.++..... ...+..++
T Consensus 198 pg~v~t~~~~~~~~~---~-~~~~~~~~~~~~----~~~~~~~l~~~~~~~~dva~~~~~l~s~~~~-----~i~G~~i~ 264 (280)
T PLN02253 198 PYAVPTALALAHLPE---D-ERTEDALAGFRA----FAGKNANLKGVELTVDDVANAVLFLASDEAR-----YISGLNLM 264 (280)
T ss_pred eCccccccccccccc---c-cchhhhhhhhHH----HhhcCCCCcCCCCCHHHHHHHHHhhcCcccc-----cccCcEEE
Confidence 99997753211 110 0 000111111000 0000000112246799999999998764322 12367787
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 265 vdgG 268 (280)
T PLN02253 265 IDGG 268 (280)
T ss_pred ECCc
Confidence 7665
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=137.17 Aligned_cols=196 Identities=12% Similarity=0.147 Sum_probs=132.5
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+++++||||+|+||.+++++|++.|+ +|+++.|+... +.+....+ ... ..+..++. |++ +.
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~---~Vi~~~r~~~~------~~~~~~~~-~~~-~~~~~~~~~D~~------~~ 68 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV---NVGLLARTEEN------LKAVAEEV-EAY-GVKVVIATADVS------DY 68 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCHHH------HHHHHHHH-HHh-CCeEEEEECCCC------CH
Confidence 468999999999999999999999865 68888887431 11111111 000 11222333 777 45
Q ss_pred HHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~ 237 (545)
+++..+++ ++|+|||+|+.... .+.++..+++|+.++.++++.+... .+.+++|++||.....
T Consensus 69 ~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~ 148 (239)
T PRK07666 69 EEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQK 148 (239)
T ss_pred HHHHHHHHHHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhcc
Confidence 56655554 78999999986421 2445778899999999999887641 2457899999986543
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.+|+..+.+++.++ .+++++++|||.|
T Consensus 149 ~~---------------------------------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v 189 (239)
T PRK07666 149 GA---------------------------------------AVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTV 189 (239)
T ss_pred CC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcc
Confidence 21 111579999998888886654 5899999999998
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.++..... +. . ......+++.+|+|++++.++...
T Consensus 190 ~t~~~~~~-------------------~~----~--~~~~~~~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 190 ATDMAVDL-------------------GL----T--DGNPDKVMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred cCcchhhc-------------------cc----c--ccCCCCCCCHHHHHHHHHHHHhCC
Confidence 77522110 00 0 011124678999999999988764
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=142.60 Aligned_cols=162 Identities=12% Similarity=0.072 Sum_probs=110.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lg 171 (545)
+++++||||||+|+||++++++|++.|+ +|+++.|... .+..... .+.... ..++. |++
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~----- 65 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM---KLVLADVQQD------ALDRAVA----ELRAQGAEVLGVRTDVS----- 65 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEeCChH------HHHHHHH----HHHhcCCeEEEEECCCC-----
Confidence 3578999999999999999999999875 6778877532 1111111 111112 22334 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccC-----CceEE
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKN-----LKMFT 228 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-----~~~~v 228 (545)
+.++++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++. +... ..++|
T Consensus 66 -d~~~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv 144 (287)
T PRK06194 66 -DAAQVEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIV 144 (287)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEE
Confidence 5566666655 47999999998532 24556778999999999887743 3211 15899
Q ss_pred EEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cC
Q psy16252 229 YVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QF 301 (545)
Q Consensus 229 ~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~ 301 (545)
++||.+++.... ....|+.||+..|.+++.++ .+
T Consensus 145 ~~sS~~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~ 185 (287)
T PRK06194 145 NTASMAGLLAPP---------------------------------------AMGIYNVSKHAVVSLTETLYQDLSLVTDQ 185 (287)
T ss_pred EeCChhhccCCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999987654311 11579999999999987764 24
Q ss_pred CCEEEEccceeec
Q psy16252 302 FPVCIFRPSIVIS 314 (545)
Q Consensus 302 l~~~i~Rp~~i~g 314 (545)
+++..+.||.|..
T Consensus 186 irv~~v~pg~i~t 198 (287)
T PRK06194 186 VGASVLCPYFVPT 198 (287)
T ss_pred eEEEEEEeCcccC
Confidence 6667777776644
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-14 Score=139.79 Aligned_cols=221 Identities=11% Similarity=0.047 Sum_probs=144.1
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
.+++|+||||||+|+||.+++++|++.|. +|+++.|.... ..+.+...+.. ......++. |++
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~---~V~l~~r~~~~--~~~~~~~~~~~-----~~~~~~~~~~Dl~------ 106 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA---DIAIVYLDEHE--DANETKQRVEK-----EGVKCLLIPGDVS------ 106 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCcch--HHHHHHHHHHh-----cCCeEEEEEccCC------
Confidence 35689999999999999999999999875 67777776422 11111111110 001222334 887
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSN 236 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~ 236 (545)
+.+.+..+++ .+|+|||+|+.... .+.+...+++|+.++.++++++... ....++|++||..++
T Consensus 107 ~~~~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~ 186 (290)
T PRK06701 107 DEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGY 186 (290)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEeccccc
Confidence 4455555443 57999999996421 2445678899999999999998762 123589999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..+.+++.++ .+++++.++||.
T Consensus 187 ~~~~---------------------------------------~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~ 227 (290)
T PRK06701 187 EGNE---------------------------------------TLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGP 227 (290)
T ss_pred CCCC---------------------------------------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCC
Confidence 4321 11569999999999988776 489999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|..+.... ... ......... ......+..++|+|++++.++..... ...+.++++.++
T Consensus 228 v~T~~~~~------~~~--~~~~~~~~~---------~~~~~~~~~~~dva~~~~~ll~~~~~-----~~~G~~i~idgg 285 (290)
T PRK06701 228 IWTPLIPS------DFD--EEKVSQFGS---------NTPMQRPGQPEELAPAYVFLASPDSS-----YITGQMLHVNGG 285 (290)
T ss_pred CCCccccc------ccC--HHHHHHHHh---------cCCcCCCcCHHHHHHHHHHHcCcccC-----CccCcEEEeCCC
Confidence 87753211 000 111111111 11234578899999999998775432 123678887765
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-13 Score=125.31 Aligned_cols=205 Identities=13% Similarity=0.095 Sum_probs=138.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
..+|.++|||||+.||.++++.|.+.|+ +|++..|+. +||+.+... +.......+. |++ |
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~---~vvl~aRR~------drL~~la~~----~~~~~~~~~~~DVt------D 64 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGA---KVVLAARRE------ERLEALADE----IGAGAALALALDVT------D 64 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCC---eEEEEeccH------HHHHHHHHh----hccCceEEEeeccC------C
Confidence 3469999999999999999999999976 788888873 455543322 2211122233 888 4
Q ss_pred HHHHHH-------HhcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRL-------VTSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~-------l~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++++. -+.++|++||+||.... .+.|+..+++|+.|..+..++.... .+-.++|.+||++..
T Consensus 65 ~~~~~~~i~~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~ 144 (246)
T COG4221 65 RAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGR 144 (246)
T ss_pred HHHHHHHHHHHHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccc
Confidence 444333 33479999999998643 3567889999999999988876531 234589999999753
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
-.. .+.+.|+.||+..-.+....+ .+++++.+-||.
T Consensus 145 ~~y---------------------------------------~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~ 185 (246)
T COG4221 145 YPY---------------------------------------PGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGL 185 (246)
T ss_pred ccC---------------------------------------CCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCce
Confidence 211 122789999998877665543 789999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
+-...-+-++ + .+...-.... -.....+..+|+|+++..++..+..
T Consensus 186 v~~~~~s~v~---~--~g~~~~~~~~------------y~~~~~l~p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 186 VETTEFSTVR---F--EGDDERADKV------------YKGGTALTPEDIAEAVLFAATQPQH 231 (246)
T ss_pred ecceeccccc---C--CchhhhHHHH------------hccCCCCCHHHHHHHHHHHHhCCCc
Confidence 8554221111 0 0000011110 1234568889999999999988765
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-13 Score=130.42 Aligned_cols=208 Identities=12% Similarity=-0.003 Sum_probs=136.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+|+|+||||||+||.+++++|++.|+ +|+++.|...... ..+++. |++ +.
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~---~v~~~~r~~~~~~-------------------~~~~~~~D~~------~~ 53 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGH---QVIGIARSAIDDF-------------------PGELFACDLA------DI 53 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEEeCCccccc-------------------CceEEEeeCC------CH
Confidence 368999999999999999999999875 6888888754311 011222 776 44
Q ss_pred HHHHHHhc------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccC
Q psy16252 175 DDKRLVTS------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 175 ~~~~~l~~------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~ 238 (545)
+++..+++ ++|+|||+|+.... .+.+...+++|+.++.++.+.+... .+..++|++||.+.++.
T Consensus 54 ~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~ 133 (234)
T PRK07577 54 EQTAATLAQINEIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGA 133 (234)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCC
Confidence 55555544 67999999997532 2345677899999988887766431 25679999999865432
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. ....|+.||...|.+++..+ .+++++++|||.+.
T Consensus 134 ~----------------------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~ 173 (234)
T PRK07577 134 L----------------------------------------DRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIE 173 (234)
T ss_pred C----------------------------------------CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCccc
Confidence 1 11579999999998887654 58999999999987
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
++... +.... . .......... .....+...+|+|.+++.++..+.. ...+..+.+.++
T Consensus 174 t~~~~----~~~~~-~-~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~l~~~~~~-----~~~g~~~~~~g~ 231 (234)
T PRK07577 174 TELFR----QTRPV-G-SEEEKRVLAS---------IPMRRLGTPEEVAAAIAFLLSDDAG-----FITGQVLGVDGG 231 (234)
T ss_pred Ccccc----ccccc-c-hhHHHHHhhc---------CCCCCCcCHHHHHHHHHHHhCcccC-----CccceEEEecCC
Confidence 65211 00000 0 0011111110 0111245779999999998865432 123667777654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=138.28 Aligned_cols=217 Identities=13% Similarity=0.053 Sum_probs=142.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++++|+||||+|+||.+++++|++.|+ +|+++.|+... +..... .++. ....++. |+.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~---~v~~~~r~~~~------~~~~~~----~~~~~~~~~~~~~~Dl~----- 66 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA---TVAFNDGLAAE------ARELAA----ALEAAGGRAHAIAADLA----- 66 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC---EEEEEeCCHHH------HHHHHH----HHHhcCCcEEEEEccCC-----
Confidence 4579999999999999999999999876 57777775321 111111 1111 1233334 777
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+++..++ .++|+|||+||.... .+.++..+++|+.++.++++.+... .+..+||++||..
T Consensus 67 -~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~ 145 (250)
T PRK12939 67 -DPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDT 145 (250)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchh
Confidence 455665555 368999999997431 2456777899999999999887642 1235899999976
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
...... ....|+.+|...|.+++..+ .++++++++|
T Consensus 146 ~~~~~~---------------------------------------~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~p 186 (250)
T PRK12939 146 ALWGAP---------------------------------------KLGAYVASKGAVIGMTRSLARELGGRGITVNAIAP 186 (250)
T ss_pred hccCCC---------------------------------------CcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEE
Confidence 543211 11469999999999998754 5799999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.+.++.....+ .......... ......+++++|+|++++.++..... ...++.+++.
T Consensus 187 g~v~t~~~~~~~--------~~~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~i~~~ 244 (250)
T PRK12939 187 GLTATEATAYVP--------ADERHAYYLK---------GRALERLQVPDDVAGAVLFLLSDAAR-----FVTGQLLPVN 244 (250)
T ss_pred CCCCCccccccC--------ChHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHhCcccc-----CccCcEEEEC
Confidence 988665321110 0011111111 11223478899999999999875432 1246788877
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 245 gg 246 (250)
T PRK12939 245 GG 246 (250)
T ss_pred CC
Confidence 65
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=134.43 Aligned_cols=214 Identities=11% Similarity=0.050 Sum_probs=136.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+|++|||||+|+||++++++|++.|+ .|+++.|... .++......+.. ......++. |++ +.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~---~v~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~Dl~------d~ 71 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF---DVAVHYNRSR-----DEAEALAAEIRA--LGRRAVALQADLA------DE 71 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCCH-----HHHHHHHHHHHh--cCCeEEEEEcCCC------CH
Confidence 478999999999999999999999865 5666655422 111111111100 011222333 887 44
Q ss_pred HHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~ 237 (545)
+++..+++ .+|+||||||... ..+.++..+++|+.|+.++++.+... ..-.++|++||.....
T Consensus 72 ~~~~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~ 151 (258)
T PRK09134 72 AEVRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN 151 (258)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC
Confidence 55555443 5799999998642 12456778999999999999887752 1235788887764432
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVI 313 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~ 313 (545)
.. .....|+.||...|.+.+.++ .++++++++||.+.
T Consensus 152 ~~---------------------------------------p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~ 192 (258)
T PRK09134 152 LN---------------------------------------PDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTL 192 (258)
T ss_pred CC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeeccccc
Confidence 11 011479999999999888765 45899999999886
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
..... . ...+.....+.. ......++|+|++++.++..+.. .++.|++.++
T Consensus 193 t~~~~----------~-~~~~~~~~~~~~---------~~~~~~~~d~a~~~~~~~~~~~~-------~g~~~~i~gg 243 (258)
T PRK09134 193 PSGRQ----------S-PEDFARQHAATP---------LGRGSTPEEIAAAVRYLLDAPSV-------TGQMIAVDGG 243 (258)
T ss_pred CCccc----------C-hHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhcCCCc-------CCCEEEECCC
Confidence 53210 0 111111111110 11246799999999999875543 4778888876
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=138.25 Aligned_cols=216 Identities=11% Similarity=0.074 Sum_probs=141.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+++|+||||+|+||.++++.|++.|. +|+++.|+... .+... .+.......+. |++ +
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~---~Vi~~~r~~~~---~~~~~--------~~~~~~~~~~~~Dl~------~ 72 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA---RVALLDRSEDV---AEVAA--------QLLGGNAKGLVCDVS------D 72 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHH--------HhhCCceEEEEecCC------C
Confidence 4579999999999999999999999875 68888886431 11110 11111222333 777 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..+||++||....
T Consensus 73 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 152 (255)
T PRK06841 73 SQSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGV 152 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhc
Confidence 555555443 67999999997532 2455678899999999999987642 245789999998653
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||...+.+.+..+ .++++..++||.
T Consensus 153 ~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~ 193 (255)
T PRK06841 153 VAL---------------------------------------ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTV 193 (255)
T ss_pred cCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCc
Confidence 211 111579999999888887765 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|..+.... .|. .........+ .....+.+++|+|++++.++..... ...+.++++.++
T Consensus 194 v~t~~~~~--~~~------~~~~~~~~~~---------~~~~~~~~~~~va~~~~~l~~~~~~-----~~~G~~i~~dgg 251 (255)
T PRK06841 194 VLTELGKK--AWA------GEKGERAKKL---------IPAGRFAYPEEIAAAALFLASDAAA-----MITGENLVIDGG 251 (255)
T ss_pred CcCccccc--ccc------hhHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCcccc-----CccCCEEEECCC
Confidence 87653210 010 0011111111 1123478999999999998865432 124677777665
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=133.59 Aligned_cols=218 Identities=13% Similarity=0.054 Sum_probs=140.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|++|||||+|+||..++++|++.|+ +|+++.|... .. ......++. |++ +
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~---~v~~~~~~~~--------~~---------~~~~~~~~~~D~~------~ 59 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA---KVIGFDQAFL--------TQ---------EDYPFATFVLDVS------D 59 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecchh--------hh---------cCCceEEEEecCC------C
Confidence 4579999999999999999999999876 6888887640 00 001122333 777 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+.+.++++ .+|+|||+|+.... .+.+...+++|+.++.++++.+... .+..++|++||....
T Consensus 60 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~ 139 (252)
T PRK08220 60 AAAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAH 139 (252)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhc
Confidence 556666554 47999999997532 2456778899999999999987541 234689999998653
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..|.+++.++ .++++++++||.
T Consensus 140 ~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~ 180 (252)
T PRK08220 140 VPR---------------------------------------IGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGS 180 (252)
T ss_pred cCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCc
Confidence 221 111679999999999987765 579999999999
Q ss_pred eeccCCCCCCCCccC-ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 312 VISTWKEPIPGWIDN-LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 312 i~g~~~~~~~g~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
|.++........... ............. ......+++++|+|++++.++..... ...+.+..+.+
T Consensus 181 v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~~~~~~-----~~~g~~i~~~g 246 (252)
T PRK08220 181 TDTDMQRTLWVDEDGEQQVIAGFPEQFKL---------GIPLGKIARPQEIANAVLFLASDLAS-----HITLQDIVVDG 246 (252)
T ss_pred CcchhhhhhccchhhhhhhhhhHHHHHhh---------cCCCcccCCHHHHHHHHHHHhcchhc-----CccCcEEEECC
Confidence 988743211000000 0000000001111 11234588999999999988764322 12355665555
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 247 g 247 (252)
T PRK08220 247 G 247 (252)
T ss_pred C
Confidence 4
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=132.87 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=115.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+++|+||||||+||+++++.|++.|+ .+|+++.|+...... ......++. |+. +
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~---------------~~~~~~~~~~D~~------~ 60 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGA--AKVYAAARDPESVTD---------------LGPRVVPLQLDVT------D 60 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCc--ccEEEEecChhhhhh---------------cCCceEEEEecCC------C
Confidence 3568999999999999999999999864 368888887532110 001223333 777 4
Q ss_pred HHHHHHHhc---CccEEEEcccc-cc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCC
Q psy16252 174 PDDKRLVTS---KVNLVFHCAAT-LR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 174 ~~~~~~l~~---~vd~Vih~Aa~-~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~ 239 (545)
.+++.++.+ .+|+|||+|+. .. ..+.+...+++|+.++.++++++... .+..+|+++||..++...
T Consensus 61 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~ 140 (238)
T PRK08264 61 PASVAAAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNF 140 (238)
T ss_pred HHHHHHHHHhcCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCC
Confidence 556666555 58999999997 21 23556778899999999999887531 245789999998764321
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeec
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIS 314 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g 314 (545)
.....|+.+|..+|.+.+.++ .+++++++|||.+.+
T Consensus 141 ---------------------------------------~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t 181 (238)
T PRK08264 141 ---------------------------------------PNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDT 181 (238)
T ss_pred ---------------------------------------CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccc
Confidence 112679999999999888764 489999999999866
Q ss_pred c
Q psy16252 315 T 315 (545)
Q Consensus 315 ~ 315 (545)
+
T Consensus 182 ~ 182 (238)
T PRK08264 182 D 182 (238)
T ss_pred c
Confidence 4
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-14 Score=133.05 Aligned_cols=194 Identities=14% Similarity=0.138 Sum_probs=130.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl~ 173 (545)
.+++|+||||||+||++++++|++.|+ +|+++.|++. ++..... .+.. ....++. |+. +
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~D~~------~ 65 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY---KVAITARDQK------ELEEAAA----ELNNKGNVLGLAADVR------D 65 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEeeCCHH------HHHHHHH----HHhccCcEEEEEccCC------C
Confidence 468999999999999999999998865 6888888642 1111111 1111 1233333 776 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEecccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~ 237 (545)
.+++..+++ .+|+|||+|+.... .+.++..+++|+.++.++++++... .+..++|++||.+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~ 145 (237)
T PRK07326 66 EADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN 145 (237)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc
Confidence 455554443 78999999987532 2445677899999999998887642 2446899999986542
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.+|+..+.+.+.+. .+++++++|||.+
T Consensus 146 ~~---------------------------------------~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~ 186 (237)
T PRK07326 146 FF---------------------------------------AGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSV 186 (237)
T ss_pred CC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccc
Confidence 21 011569999998888777653 6899999999988
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
.++.....+ . ......+..+|++.+++.++..+..
T Consensus 187 ~t~~~~~~~-------------------------~--~~~~~~~~~~d~a~~~~~~l~~~~~ 221 (237)
T PRK07326 187 ATHFNGHTP-------------------------S--EKDAWKIQPEDIAQLVLDLLKMPPR 221 (237)
T ss_pred cCccccccc-------------------------c--hhhhccCCHHHHHHHHHHHHhCCcc
Confidence 664211000 0 0001137889999999999877654
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-14 Score=139.14 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=111.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++|+||||+|+||.++++.|.+.|+ +|+++.|+... +.. +......++. |++ +.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~---~Vi~~~r~~~~------~~~--------l~~~~~~~~~~Dl~------d~~ 60 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW---RVFATCRKEED------VAA--------LEAEGLEAFQLDYA------EPE 60 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHH------HHH--------HHHCCceEEEccCC------CHH
Confidence 58999999999999999999999865 68888886421 111 1111233444 887 444
Q ss_pred HHHHHhc--------CccEEEEccccccc-------hHHHHHHHHHhHHH----HHHHHHHHHHccCCceEEEEeccccc
Q psy16252 176 DKRLVTS--------KVNLVFHCAATLRF-------DEELKEAIRTNMCA----TQTMLDLAKQCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 176 ~~~~l~~--------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~g----t~~ll~~a~~~~~~~~~v~vSS~~v~ 236 (545)
+++.+++ .+|+|||+||.... .+.++..+++|+.| ++++++.+++. +..++|++||.+..
T Consensus 61 ~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~-~~g~iv~isS~~~~ 139 (277)
T PRK05993 61 SIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQ-GQGRIVQCSSILGL 139 (277)
T ss_pred HHHHHHHHHHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhc-CCCEEEEECChhhc
Confidence 4444432 57999999986432 24457788999999 55566666664 56799999998654
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..|.+.+..+ .|+++++++||.
T Consensus 140 ~~~---------------------------------------~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~ 180 (277)
T PRK05993 140 VPM---------------------------------------KYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGP 180 (277)
T ss_pred CCC---------------------------------------CccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCC
Confidence 321 112679999999999987654 689999999998
Q ss_pred eecc
Q psy16252 312 VIST 315 (545)
Q Consensus 312 i~g~ 315 (545)
|-.+
T Consensus 181 v~T~ 184 (277)
T PRK05993 181 IETR 184 (277)
T ss_pred ccCc
Confidence 8654
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=133.37 Aligned_cols=217 Identities=12% Similarity=0.051 Sum_probs=135.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++||||||+||.+++++|++.|+ .|+...|... ++..... ..+.. ....++. |++ +
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~---~vv~~~~~~~-----~~~~~~~----~~l~~~~~~~~~~~~Dl~------~ 63 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGY---AVCLNYLRNR-----DAAEAVV----QAIRRQGGEALAVAADVA------D 63 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---eEEEecCCCH-----HHHHHHH----HHHHhCCCcEEEEEeccC------C
Confidence 47899999999999999999999875 3544443321 1121111 11111 1222334 887 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHcc------CCceEEEEec
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQCK------NLKMFTYVST 232 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~~------~~~~~v~vSS 232 (545)
.+++.++++ .+|+|||+|+.... .+.++..+++|+.++.++++.+...- .-.++|++||
T Consensus 64 ~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS 143 (248)
T PRK06123 64 EADVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSS 143 (248)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECc
Confidence 555655554 68999999997521 23456789999999999988876521 1236999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..+..... .....|+.||+..|.+++.++ .+++++++
T Consensus 144 ~~~~~~~~--------------------------------------~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i 185 (248)
T PRK06123 144 MAARLGSP--------------------------------------GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAV 185 (248)
T ss_pred hhhcCCCC--------------------------------------CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEE
Confidence 86532110 001359999999999887764 58999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
|||.|+++..... .. ...+.... +..+ ..-+..++|++++++.++..... ...+.+|+
T Consensus 186 ~pg~v~~~~~~~~-------~~-~~~~~~~~-~~~p--------~~~~~~~~d~a~~~~~l~~~~~~-----~~~g~~~~ 243 (248)
T PRK06123 186 RPGVIYTEIHASG-------GE-PGRVDRVK-AGIP--------MGRGGTAEEVARAILWLLSDEAS-----YTTGTFID 243 (248)
T ss_pred ecCcccCchhhcc-------CC-HHHHHHHH-hcCC--------CCCCcCHHHHHHHHHHHhCcccc-----CccCCEEe
Confidence 9999998742210 00 11111111 1111 01124689999999987765321 12467888
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 244 ~~gg 247 (248)
T PRK06123 244 VSGG 247 (248)
T ss_pred ecCC
Confidence 8754
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-13 Score=132.45 Aligned_cols=218 Identities=10% Similarity=0.028 Sum_probs=138.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|++|||||+|+||++++++|++.|+ +|+++.|+..... ...++. |++ +
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~---~Vi~~~r~~~~~~-------------------~~~~~~~D~~------~ 55 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS---NVINFDIKEPSYN-------------------DVDYFKVDVS------N 55 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCccccC-------------------ceEEEEccCC------C
Confidence 4579999999999999999999999876 6888888754211 112222 777 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
++++..+++ .+|+|||+||.... .+.++..+++|+.|+..+++.+... .+..++|++||....
T Consensus 56 ~~~i~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 135 (258)
T PRK06398 56 KEQVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSF 135 (258)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhc
Confidence 455554443 68999999996421 3456778899999999998877542 245789999998664
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEcccee
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIV 312 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i 312 (545)
... .....|+.||+..+.+.+..+ +++++..++||.|
T Consensus 136 ~~~---------------------------------------~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v 176 (258)
T PRK06398 136 AVT---------------------------------------RNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSI 176 (258)
T ss_pred cCC---------------------------------------CCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCc
Confidence 321 112679999999999998765 4589999999988
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
-.+.......+..+ ..+....... ... ........+..++|+|++++.++..... ...+.++.+.++
T Consensus 177 ~T~~~~~~~~~~~~-~~~~~~~~~~-~~~-----~~~~~~~~~~~p~eva~~~~~l~s~~~~-----~~~G~~i~~dgg 243 (258)
T PRK06398 177 RTPLLEWAAELEVG-KDPEHVERKI-REW-----GEMHPMKRVGKPEEVAYVVAFLASDLAS-----FITGECVTVDGG 243 (258)
T ss_pred cchHHhhhhhcccc-CChhhhHHHH-Hhh-----hhcCCcCCCcCHHHHHHHHHHHcCcccC-----CCCCcEEEECCc
Confidence 65422111000000 0000000000 000 0001112356789999999888764322 123566666554
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=131.62 Aligned_cols=204 Identities=13% Similarity=0.096 Sum_probs=134.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||.+++++|++.|+ +|+++.|+.. ..+...+. .. ......+. |++ +
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~vi~~~r~~~-----~~~~~~~~----~~-~~~~~~~~~D~~------~ 63 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA---DIVGAGRSEP-----SETQQQVE----AL-GRRFLSLTADLS------D 63 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCchH-----HHHHHHHH----hc-CCceEEEECCCC------C
Confidence 4689999999999999999999999875 6788877531 11111111 00 01222333 887 4
Q ss_pred HHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cC-CceEEEEecccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KN-LKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~-~~~~v~vSS~~v 235 (545)
.+++..++ .++|+|||+||.... .+.++..+++|+.++.++++.+... .+ ..++|++||..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~ 143 (248)
T TIGR01832 64 IEAIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLS 143 (248)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHh
Confidence 44554333 368999999997531 2456778899999999999987642 12 468999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
+.... ....|+.||+..+.+++..+ .++++++++||
T Consensus 144 ~~~~~---------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg 184 (248)
T TIGR01832 144 FQGGI---------------------------------------RVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPG 184 (248)
T ss_pred ccCCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEEC
Confidence 54321 11579999999999888775 48999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.|..+..... ............ . . ....++..+|+|++++.++...
T Consensus 185 ~v~t~~~~~~-------~~~~~~~~~~~~-~---~-----~~~~~~~~~dva~~~~~l~s~~ 230 (248)
T TIGR01832 185 YMATNNTQAL-------RADEDRNAAILE-R---I-----PAGRWGTPDDIGGPAVFLASSA 230 (248)
T ss_pred cCcCcchhcc-------ccChHHHHHHHh-c---C-----CCCCCcCHHHHHHHHHHHcCcc
Confidence 9876532111 000011111111 1 1 1235788999999999988643
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.9e-14 Score=136.31 Aligned_cols=189 Identities=14% Similarity=0.095 Sum_probs=128.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc-CCCccc-CCCCCCCCCCH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT-CSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~-Dl~~~~lgl~~ 174 (545)
+++|+||||||+||.++++.|++.|+ +|+++.|... ++.+... .+... ...++. |++ +.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~---~v~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~Dl~------~~ 62 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA---TLGLVARRTD------ALQAFAA----RLPKAARVSVYAADVR------DA 62 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----hcccCCeeEEEEcCCC------CH
Confidence 47899999999999999999999875 6888888632 2222111 11111 233344 887 44
Q ss_pred HHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFS 235 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v 235 (545)
+++.++++ .+|++||+||.... .+.++..+++|+.|+.++++.. ++. +..++|++||...
T Consensus 63 ~~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~-~~~~iv~isS~~~ 141 (257)
T PRK07024 63 DALAAAAADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAA-RRGTLVGIASVAG 141 (257)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhc-CCCEEEEEechhh
Confidence 55555543 47999999996421 1456788899999999988743 333 4578999999865
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..+.+.+..+ .+++++++|||
T Consensus 142 ~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg 182 (257)
T PRK07024 142 VRGL---------------------------------------PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPG 182 (257)
T ss_pred cCCC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecC
Confidence 4221 111579999999999987653 68999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.|.++.... .. ...-.+++.+++|+.++.++.+.
T Consensus 183 ~v~t~~~~~-------------------~~---------~~~~~~~~~~~~a~~~~~~l~~~ 216 (257)
T PRK07024 183 YIRTPMTAH-------------------NP---------YPMPFLMDADRFAARAARAIARG 216 (257)
T ss_pred CCcCchhhc-------------------CC---------CCCCCccCHHHHHHHHHHHHhCC
Confidence 997652110 00 00001368999999999988643
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=133.50 Aligned_cols=199 Identities=16% Similarity=0.105 Sum_probs=128.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+||||||+||.++++.|++.|+ +|+++.|++. ++..... .+ .....++. |++ +.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~-~~~~~~~~~Dl~------~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH---KVIATGRRQE------RLQELKD----EL-GDNLYIAQLDVR------NRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHH----Hh-ccceEEEEecCC------CHHH
Confidence 5799999999999999999999875 6888888642 1211111 11 01233334 777 4455
Q ss_pred HHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecccccc
Q psy16252 177 KRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 177 ~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v~~ 237 (545)
+..+++ ++|+|||+||... ..+.++..+++|+.|+.++++.+. +. +..++|++||..+..
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~ 139 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGSTAGSW 139 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECCcccCC
Confidence 554443 7899999998631 224567788999999777766654 33 567899999986532
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||...|.+.+..+ .++++++++||.|
T Consensus 140 ~~---------------------------------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i 180 (248)
T PRK10538 140 PY---------------------------------------AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLV 180 (248)
T ss_pred CC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCee
Confidence 11 011579999999999987764 5799999999999
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
.++..... .+.+....... .+ . ...++..+|+|++++.++..+.
T Consensus 181 ~~~~~~~~-----~~~~~~~~~~~--------~~-~---~~~~~~~~dvA~~~~~l~~~~~ 224 (248)
T PRK10538 181 GGTEFSNV-----RFKGDDGKAEK--------TY-Q---NTVALTPEDVSEAVWWVATLPA 224 (248)
T ss_pred cccccchh-----hccCcHHHHHh--------hc-c---ccCCCCHHHHHHHHHHHhcCCC
Confidence 76521100 00000000000 00 0 1134689999999999876443
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.9e-14 Score=140.46 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=113.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++|+||||||+||.+++++|++.|+ +|+++.|+.. +....... +. ...++. |++ +
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~---~Vv~~~R~~~------~~~~~~~~----l~--~v~~~~~Dl~------d 82 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA---HVIVPARRPD------VAREALAG----ID--GVEVVMLDLA------D 82 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHH----hh--hCeEEEccCC------C
Confidence 3579999999999999999999999875 6888888632 12211111 11 133344 887 4
Q ss_pred HHHHHHHh-------cCccEEEEccccccc-----hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecccccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF-----DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~-----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v~~ 237 (545)
.++++.++ .++|+|||+||.... .+.++..+++|+.|+..+++.+ ++. +..++|++||.....
T Consensus 83 ~~~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~ 161 (315)
T PRK06196 83 LESVRAFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG-AGARVVALSSAGHRR 161 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEECCHHhcc
Confidence 55555544 368999999996421 2346778899999977666644 333 346899999985432
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.....++..+..+. .....|+.||...+.+.+..+ .+++++++|||.|
T Consensus 162 ~~~~~~~~~~~~~~---------------------------~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v 214 (315)
T PRK06196 162 SPIRWDDPHFTRGY---------------------------DKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGI 214 (315)
T ss_pred CCCCccccCccCCC---------------------------ChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcc
Confidence 11110000000000 011579999999998886653 5899999999999
Q ss_pred eccC
Q psy16252 313 ISTW 316 (545)
Q Consensus 313 ~g~~ 316 (545)
.++.
T Consensus 215 ~t~~ 218 (315)
T PRK06196 215 LTPL 218 (315)
T ss_pred cCCc
Confidence 8864
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.7e-14 Score=153.01 Aligned_cols=225 Identities=16% Similarity=0.148 Sum_probs=145.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl 172 (545)
+.+++|+||||+|+||.++++.|++.|. +|+++.|+... +..... .+.. ....++. |++
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga---~Vvl~~r~~~~------~~~~~~----~l~~~~~v~~v~~Dvt------ 480 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA---CVVLADLDEEA------AEAAAA----ELGGPDRALGVACDVT------ 480 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC---EEEEEeCCHHH------HHHHHH----HHhccCcEEEEEecCC------
Confidence 4679999999999999999999999865 68888886421 111111 1111 1222333 777
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCC-ceEEEEeccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNL-KMFTYVSTAF 234 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~-~~~v~vSS~~ 234 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+. .+||++||..
T Consensus 481 d~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~ 560 (681)
T PRK08324 481 DEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKN 560 (681)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Confidence 4455554443 68999999996431 2456778899999999998777542 132 6899999986
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..|.+++.++ .++++++++|
T Consensus 561 ~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~P 601 (681)
T PRK08324 561 AVNPG---------------------------------------PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNP 601 (681)
T ss_pred ccCCC---------------------------------------CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeC
Confidence 54321 112679999999999998764 5799999999
Q ss_pred ceee-ccCCCCCCCCccCccchHHHHHHHhcCcee----EEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC
Q psy16252 310 SIVI-STWKEPIPGWIDNLYGPTGLVTGAQAGVVR----TFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP 384 (545)
Q Consensus 310 ~~i~-g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~ 384 (545)
+.|+ ++.... +.|.. ......|... ..+........+++++|+|++++.++..... ...+.
T Consensus 602 g~v~~~t~~~~-~~~~~--------~~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~-----~~tG~ 667 (681)
T PRK08324 602 DAVVRGSGIWT-GEWIE--------ARAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAVVFLASGLLS-----KTTGA 667 (681)
T ss_pred ceeecCCcccc-chhhh--------hhhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCcccc-----CCcCC
Confidence 9998 432100 11100 0000111110 0123344556789999999999988742221 12478
Q ss_pred EEEeecC
Q psy16252 385 IYNYVNS 391 (545)
Q Consensus 385 vy~i~~~ 391 (545)
+|++.++
T Consensus 668 ~i~vdgG 674 (681)
T PRK08324 668 IITVDGG 674 (681)
T ss_pred EEEECCC
Confidence 9999887
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=133.69 Aligned_cols=220 Identities=12% Similarity=0.046 Sum_probs=138.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
++++++|||||+|+||.++++.|++.|+ +|+.+.|+.. +++.... .+.. ....++. |++
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~----~i~~~~~~~~~~~~Dl~----- 71 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGA---RVVLSARKAE------ELEEAAA----HLEALGIDALWIAADVA----- 71 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHH------HHHHHHH----HHHhcCCeEEEEEccCC-----
Confidence 3579999999999999999999999875 6788888632 1111111 1111 1222344 887
Q ss_pred CCHHHHHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecc
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~ 233 (545)
+.+.++.++ ..+|+|||+||... ..+.++..+++|+.++.++++++... ++..+||++||.
T Consensus 72 -d~~~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~ 150 (259)
T PRK08213 72 -DEADIERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASV 150 (259)
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence 445554443 35899999998642 12456778899999999999977543 245789999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
......... ......|+.+|+..|.+++.++ .++++.+++
T Consensus 151 ~~~~~~~~~-----------------------------------~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~ 195 (259)
T PRK08213 151 AGLGGNPPE-----------------------------------VMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIA 195 (259)
T ss_pred hhccCCCcc-----------------------------------ccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEe
Confidence 654322100 0011679999999999998765 579999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.+-.+.... .. ..+......+. ...-+...+++++++..++..... ...+.++++
T Consensus 196 Pg~~~t~~~~~-------~~--~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~-----~~~G~~~~~ 252 (259)
T PRK08213 196 PGFFPTKMTRG-------TL--ERLGEDLLAHT---------PLGRLGDDEDLKGAALLLASDASK-----HITGQILAV 252 (259)
T ss_pred cCcCCCcchhh-------hh--HHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc-----CccCCEEEE
Confidence 99875542111 10 11222211111 111234678999888877654322 123667776
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 253 ~~~ 255 (259)
T PRK08213 253 DGG 255 (259)
T ss_pred CCC
Confidence 654
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-14 Score=135.81 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=111.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++||||||||+||+++++.|++.|+ +|+++.|.... .+.+...... . .....++. |++ +.+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~---~v~~~~r~~~~---~~~~~~~~~~----~-~~~~~~~~~D~~------~~~ 64 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH---NVIAGVQIAPQ---VTALRAEAAR----R-GLALRVEKLDLT------DAI 64 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHHHHHh----c-CCcceEEEeeCC------CHH
Confidence 47899999999999999999999875 68888886421 1111111000 0 01123333 777 556
Q ss_pred HHHHHhc-CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEeccccccCCCccc
Q psy16252 176 DKRLVTS-KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFSNSYRKNIE 243 (545)
Q Consensus 176 ~~~~l~~-~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v~~~~~~i~ 243 (545)
++..++. ++|+|||||+.... .+.++..+++|+.++.++.+.+ .+. +.++||++||.......
T Consensus 65 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~SS~~~~~~~---- 139 (257)
T PRK09291 65 DRAQAAEWDVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVAR-GKGKVVFTSSMAGLITG---- 139 (257)
T ss_pred HHHHHhcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEcChhhccCC----
Confidence 6777665 89999999996421 2445677899999987776644 333 55799999998543211
Q ss_pred ccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeec
Q psy16252 244 EIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIS 314 (545)
Q Consensus 244 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g 314 (545)
.....|+.||...|.+.+... .+++++++|||.+..
T Consensus 140 -----------------------------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t 180 (257)
T PRK09291 140 -----------------------------------PFTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLT 180 (257)
T ss_pred -----------------------------------CCcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccc
Confidence 112579999999998886643 589999999998743
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-13 Score=132.09 Aligned_cols=222 Identities=11% Similarity=0.035 Sum_probs=140.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||.+++++|++.|+ +|++..|+..... .+.+...+.. . .....++. |++ +
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~---~Vi~~~~~~~~~~-~~~~~~~~~~----~-~~~~~~~~~Dl~------~ 111 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGA---DVAISYLPVEEED-AQDVKKIIEE----C-GRKAVLLPGDLS------D 111 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEecCCcchhh-HHHHHHHHHH----c-CCeEEEEEccCC------C
Confidence 5679999999999999999999999876 5666666533211 1222221110 0 01122333 887 4
Q ss_pred HHHHHHHh-------cCccEEEEcccccc----c----hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEecccccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLR----F----DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~----~----~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~ 237 (545)
.+++..++ ..+|++||+||... + .+.++..+++|+.|+.++++++... ..-.++|++||..++.
T Consensus 112 ~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~ 191 (294)
T PRK07985 112 EKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ 191 (294)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhcc
Confidence 45554443 36799999998631 1 2456788999999999999988752 1225899999987653
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
... ....|+.||+..+.+.+..+ .|+++.+++||.|
T Consensus 192 ~~~---------------------------------------~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v 232 (294)
T PRK07985 192 PSP---------------------------------------HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPI 232 (294)
T ss_pred CCC---------------------------------------CcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcC
Confidence 211 11579999999998887664 5899999999999
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++.... +. . ........... . ....+...+|||++++.++..... ...+.++.+.++
T Consensus 233 ~t~~~~~--~~---~--~~~~~~~~~~~-~--------~~~r~~~pedva~~~~fL~s~~~~-----~itG~~i~vdgG 290 (294)
T PRK07985 233 WTALQIS--GG---Q--TQDKIPQFGQQ-T--------PMKRAGQPAELAPVYVYLASQESS-----YVTAEVHGVCGG 290 (294)
T ss_pred ccccccc--cC---C--CHHHHHHHhcc-C--------CCCCCCCHHHHHHHHHhhhChhcC-----CccccEEeeCCC
Confidence 8864211 00 0 11111111111 0 111356789999999988764332 123567776654
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-13 Score=130.66 Aligned_cols=220 Identities=18% Similarity=0.107 Sum_probs=156.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
++|||||||||+|++++++|+++|+ +|.+++|++....... ..+++.. |+. +...
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~---~v~~~~r~~~~~~~~~---------------~~v~~~~~d~~------~~~~ 56 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH---EVRAAVRNPEAAAALA---------------GGVEVVLGDLR------DPKS 56 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC---EEEEEEeCHHHHHhhc---------------CCcEEEEeccC------CHhH
Confidence 5799999999999999999999965 7889999865322111 1222232 665 6678
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHHH
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSEL 256 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~ 256 (545)
+...+++++.++++.+... ... ........+..+..+.+. . ++++++++|...+....
T Consensus 57 l~~a~~G~~~~~~i~~~~~-~~~--~~~~~~~~~~~~~a~~a~-~-~~~~~~~~s~~~~~~~~----------------- 114 (275)
T COG0702 57 LVAGAKGVDGVLLISGLLD-GSD--AFRAVQVTAVVRAAEAAG-A-GVKHGVSLSVLGADAAS----------------- 114 (275)
T ss_pred HHHHhccccEEEEEecccc-ccc--chhHHHHHHHHHHHHHhc-C-CceEEEEeccCCCCCCC-----------------
Confidence 9999999999999988765 332 223344444445554444 2 57888988887654311
Q ss_pred HHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHHH
Q psy16252 257 LKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTG 336 (545)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~ 336 (545)
+..|..+|..+|+++.. .+++++++|+..++..... ......
T Consensus 115 ------------------------~~~~~~~~~~~e~~l~~--sg~~~t~lr~~~~~~~~~~------------~~~~~~ 156 (275)
T COG0702 115 ------------------------PSALARAKAAVEAALRS--SGIPYTTLRRAAFYLGAGA------------AFIEAA 156 (275)
T ss_pred ------------------------ccHHHHHHHHHHHHHHh--cCCCeEEEecCeeeeccch------------hHHHHH
Confidence 26799999999999999 5899999997666553211 011122
Q ss_pred HhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 337 AQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 337 ~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
...+... ...+....+.+.++|++.++..++..+.. .+++|.++++ ...+..++...+.+..++.
T Consensus 157 ~~~~~~~--~~~~~~~~~~i~~~d~a~~~~~~l~~~~~-------~~~~~~l~g~--~~~~~~~~~~~l~~~~gr~ 221 (275)
T COG0702 157 EAAGLPV--IPRGIGRLSPIAVDDVAEALAAALDAPAT-------AGRTYELAGP--EALTLAELASGLDYTIGRP 221 (275)
T ss_pred HhhCCce--ecCCCCceeeeEHHHHHHHHHHHhcCCcc-------cCcEEEccCC--ceecHHHHHHHHHHHhCCc
Confidence 2222222 22334488999999999999999877654 5799999998 8899999999999998874
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=132.63 Aligned_cols=223 Identities=10% Similarity=0.093 Sum_probs=134.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lg 171 (545)
+.+|+++||||+|+||.+++++|++.|+ +|++..+... +.+.... ..+.... ...+. |+++.+-
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~---~v~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~~D~~~~~~- 68 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGA---LVAIHYGNRK-----EEAEETV----YEIQSNGGSAFSIGANLESLHG- 68 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---eEEEEcCCCH-----HHHHHHH----HHHHhcCCceEEEecccCCHHH-
Confidence 4579999999999999999999999876 4555443221 1111111 1111111 11222 6663210
Q ss_pred CCHHHHHHHh---------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVT---------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~---------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~ 234 (545)
....+..+. ..+|++||+||.... .+.++..+++|+.|+..+++++... ....++|++||..
T Consensus 69 -~~~~~~~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~ 147 (252)
T PRK12747 69 -VEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA 147 (252)
T ss_pred -HHHHHHHHHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcc
Confidence 011111111 268999999996421 2346778899999999999877652 2235899999997
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... .....|+.||+..+.+++.++ .++++..+.|
T Consensus 148 ~~~~~---------------------------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~P 188 (252)
T PRK12747 148 TRISL---------------------------------------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILP 188 (252)
T ss_pred cccCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEec
Confidence 64321 011579999999999998765 6899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++..... .. ........... .....+..++|+|+++..++..... ...+.++.+.
T Consensus 189 g~v~t~~~~~~-------~~-~~~~~~~~~~~--------~~~~~~~~~~dva~~~~~l~s~~~~-----~~~G~~i~vd 247 (252)
T PRK12747 189 GFIKTDMNAEL-------LS-DPMMKQYATTI--------SAFNRLGEVEDIADTAAFLASPDSR-----WVTGQLIDVS 247 (252)
T ss_pred CCccCchhhhc-------cc-CHHHHHHHHhc--------CcccCCCCHHHHHHHHHHHcCcccc-----CcCCcEEEec
Confidence 99977632110 00 01111111100 0112467899999999887654321 1235667665
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 248 gg 249 (252)
T PRK12747 248 GG 249 (252)
T ss_pred CC
Confidence 54
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=131.30 Aligned_cols=222 Identities=13% Similarity=0.077 Sum_probs=137.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||||+||++++++|.+.|+ +|+++.|+..... .....++. |++ +
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~r~~~~~~-----------------~~~~~~~~~D~~------~ 60 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGA---RVVTTARSRPDDL-----------------PEGVEFVAADLT------T 60 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCC---EEEEEeCChhhhc-----------------CCceeEEecCCC------C
Confidence 5689999999999999999999999875 6888888743210 01122233 776 4
Q ss_pred HHHHHHHh-------cCccEEEEcccccc---------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLR---------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~---------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
.+.+..++ ..+|+|||+||... ..+.++..+++|+.|+.++++.+... .+..++|++||..
T Consensus 61 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~ 140 (260)
T PRK06523 61 AEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQ 140 (260)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEeccc
Confidence 44444332 46899999999532 13456778899999998887765431 2446899999986
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
...... .....|+.||...|.+++.++ .++++.+++|
T Consensus 141 ~~~~~~--------------------------------------~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~P 182 (260)
T PRK06523 141 RRLPLP--------------------------------------ESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSP 182 (260)
T ss_pred ccCCCC--------------------------------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEec
Confidence 543210 012679999999998887765 5899999999
Q ss_pred ceeeccCCCCC-CCCccCc-cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 310 SIVISTWKEPI-PGWIDNL-YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 310 ~~i~g~~~~~~-~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
|.|.++..... +.+.... .........+.... ...+ ...+..++|+|+++..++..... ...+..++
T Consensus 183 g~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-----~~~~~~~~~va~~~~~l~s~~~~-----~~~G~~~~ 251 (260)
T PRK06523 183 GWIETEAAVALAERLAEAAGTDYEGAKQIIMDSL-GGIP-----LGRPAEPEEVAELIAFLASDRAA-----SITGTEYV 251 (260)
T ss_pred CcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHh-ccCc-----cCCCCCHHHHHHHHHHHhCcccc-----cccCceEE
Confidence 99977632110 0000000 00011111100000 0000 11245789999999888765322 12467888
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 252 vdgg 255 (260)
T PRK06523 252 IDGG 255 (260)
T ss_pred ecCC
Confidence 8776
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=133.75 Aligned_cols=198 Identities=14% Similarity=0.090 Sum_probs=126.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
++|+||||||+||.++++.|+++|+ +|+++.|+... ++.. .......+. |+. +.++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~---~v~~~~r~~~~------~~~~--------~~~~~~~~~~D~~------~~~~ 59 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY---RVLAACRKPDD------VARM--------NSLGFTGILLDLD------DPES 59 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHH------hHHH--------HhCCCeEEEeecC------CHHH
Confidence 6899999999999999999999875 67888886421 1111 011222333 666 3333
Q ss_pred HHHHh--------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHH----HHHHHHccCCceEEEEecccccc
Q psy16252 177 KRLVT--------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTM----LDLAKQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 177 ~~~l~--------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~l----l~~a~~~~~~~~~v~vSS~~v~~ 237 (545)
+..++ ..+|.+||+||... ..+.++..+++|+.|+.++ ++.+++. +.+++|++||.+...
T Consensus 60 ~~~~~~~i~~~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~~ss~~~~~ 138 (256)
T PRK08017 60 VERAADEVIALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPH-GEGRIVMTSSVMGLI 138 (256)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCCEEEEEcCccccc
Confidence 33322 35799999998642 1234567889999998886 4445554 567899999985542
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||...|.+.+... .+++++++|||.+
T Consensus 139 ~~---------------------------------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~ 179 (256)
T PRK08017 139 ST---------------------------------------PGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPI 179 (256)
T ss_pred CC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCc
Confidence 21 112679999999999876542 6899999999887
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
.+.... +.. .. ..... ....+.....+++++|+|+++..++.....
T Consensus 180 ~t~~~~-------~~~-------~~-~~~~~-~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 180 RTRFTD-------NVN-------QT-QSDKP-VENPGIAARFTLGPEAVVPKLRHALESPKP 225 (256)
T ss_pred ccchhh-------ccc-------ch-hhccc-hhhhHHHhhcCCCHHHHHHHHHHHHhCCCC
Confidence 543111 000 00 00000 011112234579999999999999866543
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=131.99 Aligned_cols=218 Identities=14% Similarity=0.101 Sum_probs=136.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|+++||||+|+||+++++.|++.|+ +|+++.|.... ..+.+ ......++. |++ +
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~---~v~~~~~~~~~--~~~~l-----------~~~~~~~~~~Dl~------~ 62 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGA---KVAVLYNSAEN--EAKEL-----------REKGVFTIKCDVG------N 62 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCcHH--HHHHH-----------HhCCCeEEEecCC------C
Confidence 4579999999999999999999999876 56666554321 11111 111233344 887 4
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v 235 (545)
.+++..+++ ++|+||||||... ..+.++..+++|+.|+..+.+.+ ++. +..++|++||..+
T Consensus 63 ~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS~~~ 141 (255)
T PRK06463 63 RDQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIASNAG 141 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHHh
Confidence 555555543 6899999998742 12456778899999976665544 332 4568999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... .....|+.||+..+.+++..+ .++++++++||
T Consensus 142 ~~~~~--------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg 183 (255)
T PRK06463 142 IGTAA--------------------------------------EGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPG 183 (255)
T ss_pred CCCCC--------------------------------------CCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeC
Confidence 53210 011569999999999988775 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|-.+....... ... ...+...... ......+...+|+|++++.++..... ...+..+.+.+
T Consensus 184 ~v~t~~~~~~~~--~~~--~~~~~~~~~~---------~~~~~~~~~~~~va~~~~~l~s~~~~-----~~~G~~~~~dg 245 (255)
T PRK06463 184 WVETDMTLSGKS--QEE--AEKLRELFRN---------KTVLKTTGKPEDIANIVLFLASDDAR-----YITGQVIVADG 245 (255)
T ss_pred CCCCchhhcccC--ccc--hHHHHHHHHh---------CCCcCCCcCHHHHHHHHHHHcChhhc-----CCCCCEEEECC
Confidence 885542110000 000 0011111111 11122356789999999998765432 12467888776
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 246 g 246 (255)
T PRK06463 246 G 246 (255)
T ss_pred C
Confidence 5
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=131.68 Aligned_cols=197 Identities=12% Similarity=0.094 Sum_probs=132.1
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl 172 (545)
++|+++||||+|+||..++++|+++|+ +|+++.|+... .+.+.. .+.. ....++. |++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~---~V~~~~r~~~~---~~~~~~-------~~~~~~~~~~~~~~D~~------ 65 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW---DLALVARSQDA---LEALAA-------ELRSTGVKAAAYSIDLS------ 65 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHH-------HHHhCCCcEEEEEccCC------
Confidence 358999999999999999999999875 68889886421 111111 1111 1223344 887
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+.+++..+++ .+|+|||+||.... .+.++..+++|+.++.++++.+... .+..++|++||..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 145 (241)
T PRK07454 66 NPEAIAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAA 145 (241)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHh
Confidence 4445544443 58999999996431 2456777899999998888776431 24578999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... ....|+.||...+.+.+..+ .+++++++|||
T Consensus 146 ~~~~~---------------------------------------~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg 186 (241)
T PRK07454 146 RNAFP---------------------------------------QWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLG 186 (241)
T ss_pred CcCCC---------------------------------------CccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecC
Confidence 54311 11579999999998887653 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
.+-.+.... . ... . ......+++.+|+|++++.++..+..
T Consensus 187 ~i~t~~~~~------~--------------~~~--~--~~~~~~~~~~~~va~~~~~l~~~~~~ 226 (241)
T PRK07454 187 AVNTPLWDT------E--------------TVQ--A--DFDRSAMLSPEQVAQTILHLAQLPPS 226 (241)
T ss_pred cccCCcccc------c--------------ccc--c--ccccccCCCHHHHHHHHHHHHcCCcc
Confidence 986542110 0 000 0 00012358999999999999876643
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-13 Score=132.30 Aligned_cols=220 Identities=11% Similarity=0.084 Sum_probs=139.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++++||||+|+||.++++.|+++|. +|+++.|+.. .+......+.. ...+..++. |++ +
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~---~Vi~~~r~~~------~~~~~~~~l~~--~~~~~~~~~~D~~------~ 70 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA---DVLIAARTES------QLDEVAEQIRA--AGRRAHVVAADLA------H 70 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHh--cCCcEEEEEccCC------C
Confidence 4579999999999999999999999865 6888888642 11111111100 011223333 777 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v 235 (545)
.+.+.++++ ++|+|||+||.... .+.++..+++|+.++.++++++... .+..++|++||.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~ 150 (263)
T PRK07814 71 PEATAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMG 150 (263)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccc
Confidence 555554443 68999999986321 2456778899999999999998741 24578999999755
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccce
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSI 311 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~ 311 (545)
.... .....|+.||+..|.+++..+ .+++++.++||.
T Consensus 151 ~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~ 191 (263)
T PRK07814 151 RLAG---------------------------------------RGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGS 191 (263)
T ss_pred cCCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCC
Confidence 3211 112679999999999998765 568899999998
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+..+.... ......+... ..+.. ....+..++|+|++++.++..... ...+..+.+.++
T Consensus 192 v~t~~~~~-------~~~~~~~~~~-~~~~~--------~~~~~~~~~~va~~~~~l~~~~~~-----~~~g~~~~~~~~ 250 (263)
T PRK07814 192 ILTSALEV-------VAANDELRAP-MEKAT--------PLRRLGDPEDIAAAAVYLASPAGS-----YLTGKTLEVDGG 250 (263)
T ss_pred CcCchhhh-------ccCCHHHHHH-HHhcC--------CCCCCcCHHHHHHHHHHHcCcccc-----CcCCCEEEECCC
Confidence 86542110 0000111111 11111 112356889999999998754321 123566666543
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-13 Score=129.63 Aligned_cols=194 Identities=16% Similarity=0.079 Sum_probs=128.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++++||||||+||++++++|+++|. +|+++.|+.. ++.+....+..........++. |++ +.+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~---~v~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~------~~~ 66 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR---DLALCARRTD------RLEELKAELLARYPGIKVAVAALDVN------DHD 66 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCHH------HHHHHHHHHHhhCCCceEEEEEcCCC------CHH
Confidence 58899999999999999999999864 6888888642 2222111111100111233344 887 444
Q ss_pred HHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccC
Q psy16252 176 DKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 176 ~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~ 238 (545)
++..++ .++|+|||+||.... .+.+...+++|+.++.++++.+... .+..+||++||..+...
T Consensus 67 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 146 (248)
T PRK08251 67 QVFEVFAEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRG 146 (248)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccC
Confidence 554443 368999999986432 2345667899999999988876421 25678999999765321
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
.. .....|+.||...+.+.+... .++++++++||.+.
T Consensus 147 ~~--------------------------------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~ 188 (248)
T PRK08251 147 LP--------------------------------------GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIR 188 (248)
T ss_pred CC--------------------------------------CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCc
Confidence 10 011579999999888887654 57999999999986
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
++.... .+ . ....++.+++|++++.++...
T Consensus 189 t~~~~~-------------------~~---------~-~~~~~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 189 SEMNAK-------------------AK---------S-TPFMVDTETGVKALVKAIEKE 218 (248)
T ss_pred chhhhc-------------------cc---------c-CCccCCHHHHHHHHHHHHhcC
Confidence 542110 00 0 123577899999999988653
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-13 Score=131.53 Aligned_cols=192 Identities=14% Similarity=0.080 Sum_probs=128.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++|+||||||+||++++++|++.|+ +|++..|+.. ++..... .+. ...++. |++ +
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~---~v~~~~r~~~------~~~~~~~----~~~--~~~~~~~D~~------~ 61 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGA---RVAIGDLDEA------LAKETAA----ELG--LVVGGPLDVT------D 61 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHH----Hhc--cceEEEccCC------C
Confidence 3578999999999999999999999875 5777777532 2221111 111 233333 887 4
Q ss_pred HHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
++++..++ .++|++||+||.... .+.+...+++|+.|+.++++.+... .+..++|++||....
T Consensus 62 ~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 141 (273)
T PRK07825 62 PASFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGK 141 (273)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCcccc
Confidence 44544333 467999999997532 2346778899999999988776531 255789999998664
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+... .++++++++||.
T Consensus 142 ~~~---------------------------------------~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~ 182 (273)
T PRK07825 142 IPV---------------------------------------PGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSF 182 (273)
T ss_pred CCC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCc
Confidence 321 111579999987776655543 689999999998
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
+-.+... +. .......+++++|+|++++.++.+..
T Consensus 183 v~t~~~~---------------------~~------~~~~~~~~~~~~~va~~~~~~l~~~~ 217 (273)
T PRK07825 183 VNTELIA---------------------GT------GGAKGFKNVEPEDVAAAIVGTVAKPR 217 (273)
T ss_pred Ccchhhc---------------------cc------ccccCCCCCCHHHHHHHHHHHHhCCC
Confidence 7443110 00 00112347899999999999887654
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=132.59 Aligned_cols=218 Identities=12% Similarity=0.084 Sum_probs=137.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
.++++|+||||+|+||+++++.|+++|+ +|+++.|+... +...... .+.. .++.++. |++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~---~v~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~Dl~----- 65 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGF---AVAVNYAGSAA-----AADELVA----EIEAAGGRAIAVQADVA----- 65 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCCCHH-----HHHHHHH----HHHhcCCeEEEEECCCC-----
Confidence 3579999999999999999999999976 45555554321 1111111 1111 1223333 777
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSN 236 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~ 236 (545)
+.+++.++++ ++|+|||+||.... .+.++..+++|+.++.++++.+.+. ....++|++||....
T Consensus 66 -~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~ 144 (245)
T PRK12937 66 -DAAAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA 144 (245)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc
Confidence 4556655554 68999999997531 2456778899999999999888653 122589999987553
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... +..+.|+.+|...|.+++..+ .++++++++||.
T Consensus 145 ~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~ 185 (245)
T PRK12937 145 LPL---------------------------------------PGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGP 185 (245)
T ss_pred CCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCC
Confidence 221 112679999999999998764 579999999998
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+-++... ... . ......+.. .. ...-+.+++|++++++.++..... ...+.++++.++
T Consensus 186 ~~t~~~~------~~~-~-~~~~~~~~~-~~--------~~~~~~~~~d~a~~~~~l~~~~~~-----~~~g~~~~~~~g 243 (245)
T PRK12937 186 VATELFF------NGK-S-AEQIDQLAG-LA--------PLERLGTPEEIAAAVAFLAGPDGA-----WVNGQVLRVNGG 243 (245)
T ss_pred ccCchhc------ccC-C-HHHHHHHHh-cC--------CCCCCCCHHHHHHHHHHHcCcccc-----CccccEEEeCCC
Confidence 7654210 000 0 111111111 11 112245779999998888754322 124677777653
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=131.23 Aligned_cols=214 Identities=14% Similarity=0.096 Sum_probs=134.1
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++++++||||||+||+++++.|+++|+ .|+...|... +++.... .+ .....++. |++ +.
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~---~v~~~~~~~~------~~~~~~~----~~-~~~~~~~~~D~~------~~ 64 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA---IVGLHGTRVE------KLEALAA----EL-GERVKIFPANLS------DR 64 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCHH------HHHHHHH----Hh-CCceEEEEccCC------CH
Confidence 578999999999999999999999875 5666555421 2221111 01 01223333 777 45
Q ss_pred HHHHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccccc
Q psy16252 175 DDKRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 175 ~~~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~ 237 (545)
+++..++ .++|+|||+|+... ..+.++..+++|+.++.++++.+... .+..+||++||..+..
T Consensus 65 ~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~ 144 (245)
T PRK12936 65 DEVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVT 144 (245)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCc
Confidence 5555543 36899999999743 12456788899999999998876531 2457899999975442
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.+|...+.+++.++ .++++++++||.+
T Consensus 145 ~~---------------------------------------~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~ 185 (245)
T PRK12936 145 GN---------------------------------------PGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFI 185 (245)
T ss_pred CC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcC
Confidence 21 011569999997777765543 5899999999987
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
..+.... .. ... .....+. .....+...+|+++++..++..... ...++++++.++
T Consensus 186 ~t~~~~~-------~~--~~~-~~~~~~~--------~~~~~~~~~~~ia~~~~~l~~~~~~-----~~~G~~~~~~~g 241 (245)
T PRK12936 186 ESAMTGK-------LN--DKQ-KEAIMGA--------IPMKRMGTGAEVASAVAYLASSEAA-----YVTGQTIHVNGG 241 (245)
T ss_pred cCchhcc-------cC--hHH-HHHHhcC--------CCCCCCcCHHHHHHHHHHHcCcccc-----CcCCCEEEECCC
Confidence 5532111 00 000 0001111 1112356789999999877644321 124788888775
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-13 Score=128.55 Aligned_cols=212 Identities=13% Similarity=0.143 Sum_probs=136.2
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCCCCHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||++|+||+++++.|+++|+ +|+++.|+... .+..... .+.... ..++. |++ +.++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~---~v~~~~r~~~~-----~~~~~~~----~~~~~~~~~~~~~~D~~------~~~~ 62 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA---KVIITYRSSEE-----GAEEVVE----ELKAYGVKALGVVCDVS------DRED 62 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCchh-----HHHHHHH----HHHhcCCceEEEEecCC------CHHH
Confidence 58999999999999999999875 68888886421 1111111 111111 22333 887 4555
Q ss_pred HHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCC
Q psy16252 177 KRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 177 ~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~ 239 (545)
++++++ .+|+|||+||.... .+.++..+++|+.++.++++.+... .+.++|+++||.+.....
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~ 142 (239)
T TIGR01830 63 VKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN 142 (239)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC
Confidence 555543 46999999997531 2455778899999999999988752 245699999997543211
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeec
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIS 314 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g 314 (545)
.....|+.+|...+.+++.+. .+++++++|||.+.+
T Consensus 143 ---------------------------------------~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~ 183 (239)
T TIGR01830 143 ---------------------------------------AGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDT 183 (239)
T ss_pred ---------------------------------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCC
Confidence 011579999998888776653 689999999998755
Q ss_pred cCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 315 TWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+...+. . ..+...... ..+ ..-+.+++|++++++.++..... ...+++||+.++
T Consensus 184 ~~~~~~-------~--~~~~~~~~~-~~~--------~~~~~~~~~~a~~~~~~~~~~~~-----~~~g~~~~~~~g 237 (239)
T TIGR01830 184 DMTDKL-------S--EKVKKKILS-QIP--------LGRFGTPEEVANAVAFLASDEAS-----YITGQVIHVDGG 237 (239)
T ss_pred hhhhhc-------C--hHHHHHHHh-cCC--------cCCCcCHHHHHHHHHHHhCcccC-----CcCCCEEEeCCC
Confidence 421111 0 111111111 111 12256789999999888754321 235789998654
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-13 Score=129.70 Aligned_cols=206 Identities=15% Similarity=0.120 Sum_probs=128.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+++|+||||+|+||++++++|++.|+ +|+++.|+.. .+...... + .....++. |++ +
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~---~v~~~~r~~~------~~~~~~~~----~-~~~~~~~~~D~~------~ 63 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGA---RVAITGRDPA------SLEAARAE----L-GESALVIRADAG------D 63 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCCHH------HHHHHHHH----h-CCceEEEEecCC------C
Confidence 3578999999999999999999999875 6788877532 11111110 1 01122333 766 3
Q ss_pred HHHHHHH-------hcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccC
Q psy16252 174 PDDKRLV-------TSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 174 ~~~~~~l-------~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~ 238 (545)
.++...+ ..++|+|||+||.... .+.++..+++|+.++.++++++... ....++|++||......
T Consensus 64 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~ 143 (249)
T PRK06500 64 VAAQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIG 143 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccC
Confidence 3333333 2468999999997532 2456778899999999999999752 12346777777543211
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.+|+..|.+++.++ .+++++++|||.++
T Consensus 144 ~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~ 184 (249)
T PRK06500 144 M---------------------------------------PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQ 184 (249)
T ss_pred C---------------------------------------CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCC
Confidence 0 111689999999999996654 58999999999998
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccc
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 371 (545)
++...... ..... ...+......+. + ..-+..++|+|+++..++..
T Consensus 185 t~~~~~~~-~~~~~--~~~~~~~~~~~~-~--------~~~~~~~~~va~~~~~l~~~ 230 (249)
T PRK06500 185 TPLYGKLG-LPEAT--LDAVAAQIQALV-P--------LGRFGTPEEIAKAVLYLASD 230 (249)
T ss_pred CHHHHhhc-cCccc--hHHHHHHHHhcC-C--------CCCCcCHHHHHHHHHHHcCc
Confidence 86321100 00000 011111111111 1 11245889999999988754
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=133.04 Aligned_cols=216 Identities=10% Similarity=-0.024 Sum_probs=137.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||+++++.|++.|+ +|+++.|+... ...... .+ .....++. |++ +
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~---~v~~~~~~~~~------~~~~~~----~~-~~~~~~~~~Dl~------~ 67 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW---QVVLADLDRER------GSKVAK----AL-GENAWFIAMDVA------D 67 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC---EEEEEcCCHHH------HHHHHH----Hc-CCceEEEEccCC------C
Confidence 5689999999999999999999999875 67777665321 111100 01 01223334 887 3
Q ss_pred HHHHHHHh-------cCccEEEEccccccc---------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEecccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF---------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~---------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v 235 (545)
.+++..++ ..+|+|||+||.... .+.++..+++|+.++.++++++... ....++|++||..+
T Consensus 68 ~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~ 147 (255)
T PRK05717 68 EAQVAAGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRA 147 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhh
Confidence 44443332 257999999997531 2346778899999999999998641 12357999999865
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccce
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSI 311 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~ 311 (545)
.... ...+.|+.||+..|.+++.++ .++++.+++||.
T Consensus 148 ~~~~---------------------------------------~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~ 188 (255)
T PRK05717 148 RQSE---------------------------------------PDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGW 188 (255)
T ss_pred cCCC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 4321 112679999999999988765 469999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.++..... . . ..+. ....+.. ....+..++|+|.++..++..... ...+.++.+.++
T Consensus 189 i~t~~~~~~--~----~--~~~~-~~~~~~~--------~~~~~~~~~~va~~~~~l~~~~~~-----~~~g~~~~~~gg 246 (255)
T PRK05717 189 IDARDPSQR--R----A--EPLS-EADHAQH--------PAGRVGTVEDVAAMVAWLLSRQAG-----FVTGQEFVVDGG 246 (255)
T ss_pred CcCCccccc--c----c--hHHH-HHHhhcC--------CCCCCcCHHHHHHHHHHHcCchhc-----CccCcEEEECCC
Confidence 988632110 0 0 0110 0001110 112367889999999887754321 113567766554
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-13 Score=130.06 Aligned_cols=218 Identities=13% Similarity=0.105 Sum_probs=139.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|++|||||+|+||.+++++|++.|+ +|++..|+.. ++..... .++.. ....+. |++
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~---~vvl~~r~~~------~~~~~~~----~l~~~~~~~~~~~~Dl~----- 68 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA---EIIINDITAE------RAELAVA----KLRQEGIKAHAAPFNVT----- 68 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC---EEEEEcCCHH------HHHHHHH----HHHhcCCeEEEEecCCC-----
Confidence 3579999999999999999999999875 6777777632 1222111 11111 122233 777
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+.+..+++ .+|+|||+||... ..+.++..+++|+.++..+++.+... .+..++|++||..
T Consensus 69 -~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~ 147 (254)
T PRK08085 69 -HKQEVEAAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQ 147 (254)
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccch
Confidence 4455555443 5899999999642 13556778999999999988877652 2456899999975
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... .....|+.||...|.+++.++ .++++.+++|
T Consensus 148 ~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~p 188 (254)
T PRK08085 148 SELGR---------------------------------------DTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAP 188 (254)
T ss_pred hccCC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEe
Confidence 43211 111579999999999998875 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.+.++...+... ...+...... . .....+...+||+++++.++..... .-.+.+..+.
T Consensus 189 G~~~t~~~~~~~~-------~~~~~~~~~~-~--------~p~~~~~~~~~va~~~~~l~~~~~~-----~i~G~~i~~d 247 (254)
T PRK08085 189 GYFKTEMTKALVE-------DEAFTAWLCK-R--------TPAARWGDPQELIGAAVFLSSKASD-----FVNGHLLFVD 247 (254)
T ss_pred CCCCCcchhhhcc-------CHHHHHHHHh-c--------CCCCCCcCHHHHHHHHHHHhCcccc-----CCcCCEEEEC
Confidence 9998764322110 0111111111 1 1122366789999998887764332 1235555554
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 248 gg 249 (254)
T PRK08085 248 GG 249 (254)
T ss_pred CC
Confidence 43
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-13 Score=131.02 Aligned_cols=199 Identities=12% Similarity=0.054 Sum_probs=127.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCCCCH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lgl~~ 174 (545)
|+|+||||||+||.+++++|++.|. +|++..|+.. +++.... .++.. ...++. |++ +.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~D~~------~~ 61 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW---RLALADVNEE------GGEETLK----LLREAGGDGFYQRCDVR------DY 61 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCceEEEEccCC------CH
Confidence 5799999999999999999999865 6777777632 1222111 11111 222334 777 44
Q ss_pred HHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEeccccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v~ 236 (545)
+++..+++ ++|+|||+||.... .+.++..+++|+.++.++.+.+ ++. +..++|++||..+.
T Consensus 62 ~~~~~~~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~vsS~~~~ 140 (270)
T PRK05650 62 SQLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQ-KSGRIVNIASMAGL 140 (270)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEECChhhc
Confidence 55555443 68999999997532 2456677899999888877664 443 56799999998665
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..+.+.+.++ .++++++++||.
T Consensus 141 ~~~~---------------------------------------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~ 181 (270)
T PRK05650 141 MQGP---------------------------------------AMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSF 181 (270)
T ss_pred CCCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCc
Confidence 3211 11579999998666655543 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccc
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 371 (545)
+.++........ ............ ...+++++|||+.++.++.+
T Consensus 182 v~t~~~~~~~~~---~~~~~~~~~~~~-------------~~~~~~~~~vA~~i~~~l~~ 225 (270)
T PRK05650 182 FQTNLLDSFRGP---NPAMKAQVGKLL-------------EKSPITAADIADYIYQQVAK 225 (270)
T ss_pred cccCcccccccC---chhHHHHHHHHh-------------hcCCCCHHHHHHHHHHHHhC
Confidence 977532221100 000001111000 11357899999999999764
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-13 Score=128.23 Aligned_cols=216 Identities=12% Similarity=0.058 Sum_probs=136.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+++||||+|+||+++++.|++.|+ +|+...|... .+.+... ..+. .+..++. |++ +.
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~---~vv~~~~~~~-----~~~~~~~----~~~~-~~~~~~~~D~~------~~ 64 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGA---RVVVNYHQSE-----DAAEALA----DELG-DRAIALQADVT------DR 64 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC---eEEEEcCCCH-----HHHHHHH----HHhC-CceEEEEcCCC------CH
Confidence 468999999999999999999999876 4555444321 1111111 1111 1233333 777 44
Q ss_pred HHHHHHhc-------C-ccEEEEcccccc-------------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEE
Q psy16252 175 DDKRLVTS-------K-VNLVFHCAATLR-------------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYV 230 (545)
Q Consensus 175 ~~~~~l~~-------~-vd~Vih~Aa~~~-------------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~v 230 (545)
+++..+++ . +|+|||+|+... ..+.+...+++|+.++.++++.+... .+..++|++
T Consensus 65 ~~~~~~~~~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~i 144 (253)
T PRK08642 65 EQVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINI 144 (253)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 55555543 2 899999997521 12445677899999999999988631 245689999
Q ss_pred eccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 231 STAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 231 SS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
||....... ...+.|+.||...|.+++.++ .++++.
T Consensus 145 ss~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~ 185 (253)
T PRK08642 145 GTNLFQNPV---------------------------------------VPYHDYTTAKAALLGLTRNLAAELGPYGITVN 185 (253)
T ss_pred CCccccCCC---------------------------------------CCccchHHHHHHHHHHHHHHHHHhCccCeEEE
Confidence 986432110 011579999999999998875 579999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
.++||.+-.+... .. .+......... ..+ ...+.+.+|++++++.++..... ...+.+
T Consensus 186 ~i~pG~v~t~~~~---~~-----~~~~~~~~~~~-~~~--------~~~~~~~~~va~~~~~l~~~~~~-----~~~G~~ 243 (253)
T PRK08642 186 MVSGGLLRTTDAS---AA-----TPDEVFDLIAA-TTP--------LRKVTTPQEFADAVLFFASPWAR-----AVTGQN 243 (253)
T ss_pred EEeecccCCchhh---cc-----CCHHHHHHHHh-cCC--------cCCCCCHHHHHHHHHHHcCchhc-----CccCCE
Confidence 9999988654211 00 01111111111 111 12478899999999988865332 224677
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
+.+.++
T Consensus 244 ~~vdgg 249 (253)
T PRK08642 244 LVVDGG 249 (253)
T ss_pred EEeCCC
Confidence 776654
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-13 Score=129.53 Aligned_cols=226 Identities=10% Similarity=0.057 Sum_probs=139.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||.++++.|++.|+ +|+++.|+.. ++++....+..........++. |++ +
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~---~vv~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~Dl~------~ 69 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA---AVALADLDAA------LAERAAAAIARDVAGARVLAVPADVT------D 69 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHhccCCceEEEEEccCC------C
Confidence 4579999999999999999999999875 6888888632 2222111110000011222333 877 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+++..+++ .+|++||+||.... .+.++..+++|+.++..+++.+... .+..++|++||....
T Consensus 70 ~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 149 (260)
T PRK07063 70 AASVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAF 149 (260)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhc
Confidence 455555543 68999999996421 3456778899999999998887531 234689999998654
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+.++ .++++..++||.
T Consensus 150 ~~~---------------------------------------~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~ 190 (260)
T PRK07063 150 KII---------------------------------------PGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGY 190 (260)
T ss_pred cCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCC
Confidence 321 111579999999999988764 579999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|-.+..... |. ....+........ ...+ .--+...+|+|++++.++..... ...+.+..+.++
T Consensus 191 v~t~~~~~~--~~-~~~~~~~~~~~~~-~~~~--------~~r~~~~~~va~~~~fl~s~~~~-----~itG~~i~vdgg 253 (260)
T PRK07063 191 IETQLTEDW--WN-AQPDPAAARAETL-ALQP--------MKRIGRPEEVAMTAVFLASDEAP-----FINATCITIDGG 253 (260)
T ss_pred ccChhhhhh--hh-ccCChHHHHHHHH-hcCC--------CCCCCCHHHHHHHHHHHcCcccc-----ccCCcEEEECCC
Confidence 865421110 00 0000011111111 1100 11255789999999988765322 123566666554
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=126.07 Aligned_cols=216 Identities=13% Similarity=0.065 Sum_probs=133.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLGL 172 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lgl 172 (545)
++|+++||||||+||++++++|++.|+ +|++..+.... +..... ..+.....+ .+. |++
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~---~vv~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~D~~------ 63 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGF---KVVAGCGPNSP-----RRVKWL----EDQKALGFDFIASEGNVG------ 63 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC---EEEEEcCCChH-----HHHHHH----HHHHhcCCcEEEEEcCCC------
Confidence 468999999999999999999999975 46654443211 111111 111111212 222 776
Q ss_pred CHHHHHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEecccc
Q psy16252 173 SPDDKRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAFS 235 (545)
Q Consensus 173 ~~~~~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~v 235 (545)
+.+++..++ .++|+|||+||... ..+.++..+++|+.++..+.+.+.. ..+..++|++||...
T Consensus 64 ~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 143 (246)
T PRK12938 64 DWDSTKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNG 143 (246)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhc
Confidence 445555444 36899999999753 1245677889999997777665543 125578999999764
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.+|+..+.+.+..+ .++++++++||
T Consensus 144 ~~~~---------------------------------------~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg 184 (246)
T PRK12938 144 QKGQ---------------------------------------FGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPG 184 (246)
T ss_pred cCCC---------------------------------------CCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEec
Confidence 3221 112579999998888776653 68999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.+.++.... . . ..++...... .....+..++++++++..++..... ...+..+.+.+
T Consensus 185 ~~~t~~~~~-------~-~-~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~l~~~~~~-----~~~g~~~~~~~ 241 (246)
T PRK12938 185 YIGTDMVKA-------I-R-PDVLEKIVAT---------IPVRRLGSPDEIGSIVAWLASEESG-----FSTGADFSLNG 241 (246)
T ss_pred ccCCchhhh-------c-C-hHHHHHHHhc---------CCccCCcCHHHHHHHHHHHcCcccC-----CccCcEEEECC
Confidence 987653211 0 0 1111111111 1122356789999999987755322 12356666654
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 242 g 242 (246)
T PRK12938 242 G 242 (246)
T ss_pred c
Confidence 3
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-13 Score=129.19 Aligned_cols=213 Identities=12% Similarity=0.101 Sum_probs=137.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++++++||||+|+||..+++.|++.|+ +|+++.|+.. ++..... .++. ....++. |++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~---~vi~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~----- 64 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA---KLALIDLNQE------KLEEAVA----ECGALGTEVRGYAANVT----- 64 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCceEEEEcCCC-----
Confidence 3579999999999999999999999865 6777777642 1221111 1111 1122333 776
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc----------------chHHHHHHHHHhHHHHHHHHHHHHH----ccCC
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR----------------FDEELKEAIRTNMCATQTMLDLAKQ----CKNL 224 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~----------------~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~ 224 (545)
+.+.+.++++ .+|+|||+||... ..+.+...+++|+.|+..+++.+.. ...-
T Consensus 65 -~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~ 143 (253)
T PRK08217 65 -DEEDVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSK 143 (253)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC
Confidence 3444444333 5799999998532 1244566788999999887765443 1122
Q ss_pred ceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----
Q psy16252 225 KMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----- 299 (545)
Q Consensus 225 ~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----- 299 (545)
..++++||...++.. ....|+.||...|.+++.++
T Consensus 144 ~~iv~~ss~~~~~~~----------------------------------------~~~~Y~~sK~a~~~l~~~la~~~~~ 183 (253)
T PRK08217 144 GVIINISSIARAGNM----------------------------------------GQTNYSASKAGVAAMTVTWAKELAR 183 (253)
T ss_pred eEEEEEccccccCCC----------------------------------------CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 468999987654321 11579999999999987765
Q ss_pred cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCC
Q psy16252 300 QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKD 379 (545)
Q Consensus 300 ~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~ 379 (545)
.+++++.++||.+.++..... . .........+. ....+.+++|+|+++..++.....
T Consensus 184 ~~i~v~~v~pg~v~t~~~~~~-------~--~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~~~~~~----- 240 (253)
T PRK08217 184 YGIRVAAIAPGVIETEMTAAM-------K--PEALERLEKMI---------PVGRLGEPEEIAHTVRFIIENDYV----- 240 (253)
T ss_pred cCcEEEEEeeCCCcCcccccc-------C--HHHHHHHHhcC---------CcCCCcCHHHHHHHHHHHHcCCCc-----
Confidence 589999999999977632211 1 11222221111 122356889999999998864332
Q ss_pred CCCCCEEEeecC
Q psy16252 380 PSCLPIYNYVNS 391 (545)
Q Consensus 380 ~~~~~vy~i~~~ 391 (545)
.+++|++.++
T Consensus 241 --~g~~~~~~gg 250 (253)
T PRK08217 241 --TGRVLEIDGG 250 (253)
T ss_pred --CCcEEEeCCC
Confidence 4789998875
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-13 Score=128.57 Aligned_cols=226 Identities=11% Similarity=0.100 Sum_probs=136.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC-CCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK-NQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~-~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+++|+++||||+|+||.++++.|++.|+ +|+++.|... .....+.+.+.+.. . .....++. |++
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~---~vv~i~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~D~~------ 71 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGA---KAVAIHYNSAASKADAEETVAAVKA----A-GAKAVAFQADLT------ 71 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC---cEEEEecCCccchHHHHHHHHHHHH----h-CCcEEEEecCcC------
Confidence 3579999999999999999999999876 4555555432 22212222111110 0 11223334 887
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEecccccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~ 237 (545)
+.+++..+++ ++|++||+||... ..+.++..+++|+.++..+++.+... ....++++++|..+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~ 151 (257)
T PRK12744 72 TAAAVEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA 151 (257)
T ss_pred CHHHHHHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc
Confidence 4555555543 6899999999732 12346778899999999999988652 1124566664332211
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||+..|.+.+.++ .++++++++||.+
T Consensus 152 ~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v 192 (257)
T PRK12744 152 FT---------------------------------------PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPM 192 (257)
T ss_pred cC---------------------------------------CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCcc
Confidence 10 112679999999999998875 4799999999999
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++...+..+ +.... .... .. ...+-....+.+++|+|+++..++..... ..++++++.++
T Consensus 193 ~t~~~~~~~~-------~~~~~--~~~~-~~--~~~~~~~~~~~~~~dva~~~~~l~~~~~~------~~g~~~~~~gg 253 (257)
T PRK12744 193 DTPFFYPQEG-------AEAVA--YHKT-AA--ALSPFSKTGLTDIEDIVPFIRFLVTDGWW------ITGQTILINGG 253 (257)
T ss_pred ccchhccccc-------cchhh--cccc-cc--cccccccCCCCCHHHHHHHHHHhhcccce------eecceEeecCC
Confidence 7753222100 00000 0000 00 00111122478899999999998874211 13678887765
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.8e-13 Score=130.07 Aligned_cols=196 Identities=15% Similarity=0.106 Sum_probs=129.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++|+||||+|+||+++++.|++.|+ +|+++.|+.. +++.....+.. . .....++. |++ +
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~---~Vi~~~R~~~------~l~~~~~~l~~-~-~~~~~~~~~Dl~------d 100 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA---TVVAVARRED------LLDAVADRITR-A-GGDAMAVPCDLS------D 100 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHHHHHh-c-CCcEEEEEccCC------C
Confidence 4679999999999999999999999865 6888888632 22221111100 0 01122333 877 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc---------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEeccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF---------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAF 234 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~---------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~ 234 (545)
.+++.++++ ++|+||||||.... .+.++..+++|+.|+.++++.+.. ..+..++|++||.+
T Consensus 101 ~~~v~~~~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~ 180 (293)
T PRK05866 101 LDAVDALVADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWG 180 (293)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChh
Confidence 555655554 78999999996521 134466789999998888876542 12557999999976
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+..... .....|+.||+..+.+++..+ .++++++++|
T Consensus 181 ~~~~~~--------------------------------------p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~p 222 (293)
T PRK05866 181 VLSEAS--------------------------------------PLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYY 222 (293)
T ss_pred hcCCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEc
Confidence 543110 112679999999998887764 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
|.|-.+...+ . .. ......+..++||+.++.++...
T Consensus 223 g~v~T~~~~~---------------------~-~~-----~~~~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 223 PLVATPMIAP---------------------T-KA-----YDGLPALTADEAAEWMVTAARTR 258 (293)
T ss_pred CcccCccccc---------------------c-cc-----ccCCCCCCHHHHHHHHHHHHhcC
Confidence 9875541110 0 00 00122468899999999988653
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-13 Score=128.51 Aligned_cols=218 Identities=13% Similarity=0.128 Sum_probs=137.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+.+++|+||||||+||.++++.|++.|+ +|+.+ .|.... .......+ .. ....+.++. |++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~---~v~~~~~r~~~~------~~~~~~~~-~~-~~~~~~~~~~D~~------ 65 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGA---KVVIAYDINEEA------AQELLEEI-KE-EGGDAIAVKADVS------ 65 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCCCHHH------HHHHHHHH-Hh-cCCeEEEEECCCC------
Confidence 3468999999999999999999998865 56666 665321 11111110 00 011233344 887
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.++.++++.+... .+.++||++||...
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~ 145 (247)
T PRK05565 66 SEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWG 145 (247)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhh
Confidence 4455555443 78999999997521 2446778899999999988877642 24567999999865
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... ....|+.+|...+.+++... .+++++++|||
T Consensus 146 ~~~~~---------------------------------------~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg 186 (247)
T PRK05565 146 LIGAS---------------------------------------CEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPG 186 (247)
T ss_pred ccCCC---------------------------------------CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEC
Confidence 43211 11469999988877776654 68999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.+-++..... . + ........ ......+...+|++++++.++..... ...++++++.+
T Consensus 187 ~v~t~~~~~~-------~-~-~~~~~~~~---------~~~~~~~~~~~~va~~~~~l~~~~~~-----~~~g~~~~~~~ 243 (247)
T PRK05565 187 AIDTEMWSSF-------S-E-EDKEGLAE---------EIPLGRLGKPEEIAKVVLFLASDDAS-----YITGQIITVDG 243 (247)
T ss_pred CccCcccccc-------C-h-HHHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCCccC-----CccCcEEEecC
Confidence 9865432211 1 0 11111111 01112356889999999988765432 12466777665
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 244 ~ 244 (247)
T PRK05565 244 G 244 (247)
T ss_pred C
Confidence 4
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=131.68 Aligned_cols=212 Identities=14% Similarity=0.069 Sum_probs=138.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|+++||||||+||+++++.|++.|+ .|+++.|+..... ......++. |+. +
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~---~v~~~~r~~~~~~----------------~~~~~~~~~~D~~------~ 58 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA---TVVVCGRRAPETV----------------DGRPAEFHAADVR------D 58 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCChhhhh----------------cCCceEEEEccCC------C
Confidence 4579999999999999999999999865 6888888643200 001122333 776 4
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v 235 (545)
.+++..+++ ++|+|||+||... ..+.++..+++|+.++.++++.+... .+..++|++||...
T Consensus 59 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~ 138 (252)
T PRK07856 59 PDQVAALVDAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSG 138 (252)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Confidence 555555554 5699999998642 12456778899999999999987641 13368999999865
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccce
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSI 311 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~ 311 (545)
.... .....|+.||...|.+++..+ +.+++..++||.
T Consensus 139 ~~~~---------------------------------------~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~ 179 (252)
T PRK07856 139 RRPS---------------------------------------PGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGL 179 (252)
T ss_pred CCCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEecc
Confidence 4321 112679999999999998765 348899999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|..+..... .............. ....+...+|+|++++.++..... ...+..+.+.++
T Consensus 180 v~t~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~p~~va~~~~~L~~~~~~-----~i~G~~i~vdgg 238 (252)
T PRK07856 180 VRTEQSELH-------YGDAEGIAAVAATV---------PLGRLATPADIAWACLFLASDLAS-----YVSGANLEVHGG 238 (252)
T ss_pred ccChHHhhh-------ccCHHHHHHHhhcC---------CCCCCcCHHHHHHHHHHHcCcccC-----CccCCEEEECCC
Confidence 866522110 00011111111111 112345789999999887754321 124677777665
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-13 Score=128.66 Aligned_cols=188 Identities=14% Similarity=0.115 Sum_probs=129.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
++++||||||+||.+++++|+++|+ +|+++.|+.. +++..... ..+..++. |++ +.++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~---~V~~~~r~~~------~~~~~~~~------~~~~~~~~~D~~------~~~~ 60 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW---QVIACGRNQS------VLDELHTQ------SANIFTLAFDVT------DHPG 60 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC---EEEEEECCHH------HHHHHHHh------cCCCeEEEeeCC------CHHH
Confidence 6899999999999999999999875 6888888632 22221110 01233344 887 5566
Q ss_pred HHHHhcC----ccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCCcccc
Q psy16252 177 KRLVTSK----VNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRKNIEE 244 (545)
Q Consensus 177 ~~~l~~~----vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i~E 244 (545)
+.+++++ +|++||+||.... .+.++..+++|+.|+.++++++... .+-.++|++||.......
T Consensus 61 ~~~~~~~~~~~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~----- 135 (240)
T PRK06101 61 TKAALSQLPFIPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELAL----- 135 (240)
T ss_pred HHHHHHhcccCCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCC-----
Confidence 7766654 5899999985421 2345678999999999999998752 123578999987543211
Q ss_pred cccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCC
Q psy16252 245 IIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEP 319 (545)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~ 319 (545)
.....|+.||+..|.+.+.++ .+++++++|||.|.++....
T Consensus 136 ----------------------------------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~ 181 (240)
T PRK06101 136 ----------------------------------PRAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDK 181 (240)
T ss_pred ----------------------------------CCCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCC
Confidence 111579999999999987653 68999999999997753210
Q ss_pred CCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 320 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
. . . . ...+++.+++|+.++.++....
T Consensus 182 ~------------------~-----~----~-~~~~~~~~~~a~~i~~~i~~~~ 207 (240)
T PRK06101 182 N------------------T-----F----A-MPMIITVEQASQEIRAQLARGK 207 (240)
T ss_pred C------------------C-----C----C-CCcccCHHHHHHHHHHHHhcCC
Confidence 0 0 0 0 0114789999999998887643
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-13 Score=133.88 Aligned_cols=178 Identities=15% Similarity=0.099 Sum_probs=110.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||.+++++|++.|+ +|+++.|+... .......+..........++. |++ +
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~---~vi~~~r~~~~------~~~~~~~l~~~~~~~~~~~~~~Dl~------d 78 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA---HVVLAVRNLDK------GKAAAARITAATPGADVTLQELDLT------S 78 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEeCCHHH------HHHHHHHHHHhCCCCceEEEECCCC------C
Confidence 4679999999999999999999999875 68888886321 111111111000011223344 887 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-----hHHHHHHHHHhHHH----HHHHHHHHHHccCCceEEEEecccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-----DEELKEAIRTNMCA----TQTMLDLAKQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-----~~~~~~~~~~Nv~g----t~~ll~~a~~~~~~~~~v~vSS~~v~~ 237 (545)
.+++..+++ ++|+|||+||.... .+.++..+++|+.| +..+++.+++. +..++|++||.....
T Consensus 79 ~~~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~ 157 (306)
T PRK06197 79 LASVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSSGGHRI 157 (306)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECCHHHhc
Confidence 455555443 58999999996432 23456678999999 55566666554 457999999986543
Q ss_pred CCC-cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE--Ecc
Q psy16252 238 YRK-NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI--FRP 309 (545)
Q Consensus 238 ~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i--~Rp 309 (545)
... ..++.....+ ......|+.||+..+.+.+..+ .++++++ +.|
T Consensus 158 ~~~~~~~~~~~~~~---------------------------~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~P 210 (306)
T PRK06197 158 RAAIHFDDLQWERR---------------------------YNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHP 210 (306)
T ss_pred cCCCCccccCcccC---------------------------CCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCC
Confidence 111 1110000000 0112579999999998887764 4555554 479
Q ss_pred ceeecc
Q psy16252 310 SIVIST 315 (545)
Q Consensus 310 ~~i~g~ 315 (545)
|.|..+
T Consensus 211 G~v~T~ 216 (306)
T PRK06197 211 GVSNTE 216 (306)
T ss_pred CcccCc
Confidence 988664
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-13 Score=130.49 Aligned_cols=219 Identities=13% Similarity=0.086 Sum_probs=139.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+++|+||||+|+||.+++++|++.|. +|+++.|.... .+++...+.. . .....++. |++ +
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~---~vv~~~r~~~~---~~~~~~~l~~----~-~~~~~~~~~D~~------~ 71 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINADA---ANHVVDEIQQ----L-GGQAFACRCDIT------S 71 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCHHH---HHHHHHHHHh----c-CCcEEEEEccCC------C
Confidence 4589999999999999999999999875 57777775321 1111111110 0 01122333 887 4
Q ss_pred HHHHHHHh-------cCccEEEEccccccc------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~ 237 (545)
.+++.+++ .++|+|||+||.... .+.++..+++|+.++.++++++... .+..++|++||.++..
T Consensus 72 ~~~i~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 151 (255)
T PRK06113 72 EQELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN 151 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC
Confidence 44554433 367999999996432 2456677899999999999998631 1335899999986532
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||+..+.+++..+ .+++++++.||.+
T Consensus 152 ~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~ 192 (255)
T PRK06113 152 KN---------------------------------------INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAI 192 (255)
T ss_pred CC---------------------------------------CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccc
Confidence 11 112579999999999998765 5789999999998
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
..+.... ... ..+....... .....+..++|++++++.++..... .-.++++++.++
T Consensus 193 ~t~~~~~-------~~~-~~~~~~~~~~---------~~~~~~~~~~d~a~~~~~l~~~~~~-----~~~G~~i~~~gg 249 (255)
T PRK06113 193 LTDALKS-------VIT-PEIEQKMLQH---------TPIRRLGQPQDIANAALFLCSPAAS-----WVSGQILTVSGG 249 (255)
T ss_pred ccccccc-------ccC-HHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCcccc-----CccCCEEEECCC
Confidence 6542110 011 1111111111 1112356889999999998764322 124678887775
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=126.38 Aligned_cols=218 Identities=14% Similarity=0.087 Sum_probs=137.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++++|+||||+|+||.+++++|++.|+ +|+.+.|... +++.... .+... ...++. |++
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~---~Vi~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~----- 67 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA---HVIVSSRKLD------GCQAVAD----AIVAAGGKAEALACHIG----- 67 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCeEEEEEcCCC-----
Confidence 4579999999999999999999999875 6888888532 1222111 11111 122333 776
Q ss_pred CCHHHHHHHh-------cCccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.++++.++ ..+|+|||+|+... ..+.++..+++|+.++..+++++... .+..+++++||.
T Consensus 68 -~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 146 (252)
T PRK07035 68 -EMEQIDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASV 146 (252)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECch
Confidence 344444443 35899999998532 12445678899999998888776331 245789999997
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
+..... .....|+.||+..|.+++.++ .+++++.+.
T Consensus 147 ~~~~~~---------------------------------------~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~ 187 (252)
T PRK07035 147 NGVSPG---------------------------------------DFQGIYSITKAAVISMTKAFAKECAPFGIRVNALL 187 (252)
T ss_pred hhcCCC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEe
Confidence 654221 111579999999999998875 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|..+.... .............. . ....+...+|+|++++.++..... ...+.++.+
T Consensus 188 PG~v~t~~~~~-------~~~~~~~~~~~~~~-~--------~~~~~~~~~~va~~~~~l~~~~~~-----~~~g~~~~~ 246 (252)
T PRK07035 188 PGLTDTKFASA-------LFKNDAILKQALAH-I--------PLRRHAEPSEMAGAVLYLASDASS-----YTTGECLNV 246 (252)
T ss_pred eccccCccccc-------ccCCHHHHHHHHcc-C--------CCCCcCCHHHHHHHHHHHhCcccc-----CccCCEEEe
Confidence 99986542211 11111122111111 0 012356788999999987765432 123566666
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 247 dgg 249 (252)
T PRK07035 247 DGG 249 (252)
T ss_pred CCC
Confidence 543
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=127.35 Aligned_cols=163 Identities=15% Similarity=0.118 Sum_probs=110.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+++||||+|+||.++++.|++.|+ +|+++.|+... .+++...+. . . ...+.++. |++ +++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~---~v~~~~r~~~~---~~~~~~~~~---~-~-~~~~~~~~~Dl~------~~~ 64 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF---KVAIVDYNEET---AQAAADKLS---K-D-GGKAIAVKADVS------DRD 64 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHHHHH---h-c-CCeEEEEECCCC------CHH
Confidence 58999999999999999999999875 68888886421 111111111 0 0 01222334 887 444
Q ss_pred HHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecccccc
Q psy16252 176 DKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 176 ~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v~~ 237 (545)
.+.++++ ++|+||||||.... .+.++..+++|+.++..+++.+... +.-.++|++||.....
T Consensus 65 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 144 (256)
T PRK08643 65 QVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV 144 (256)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc
Confidence 5544443 68999999986421 2456778899999998887776542 1235799999975432
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||+..+.+.+.++ .+++++.++||.|
T Consensus 145 ~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v 185 (256)
T PRK08643 145 GN---------------------------------------PELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIV 185 (256)
T ss_pred CC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCC
Confidence 11 011579999999888877654 6799999999998
Q ss_pred ecc
Q psy16252 313 IST 315 (545)
Q Consensus 313 ~g~ 315 (545)
.++
T Consensus 186 ~t~ 188 (256)
T PRK08643 186 KTP 188 (256)
T ss_pred cCh
Confidence 765
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-13 Score=133.99 Aligned_cols=197 Identities=13% Similarity=0.064 Sum_probs=114.8
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+++|+||||+|+||.++++.|++.|+ +|+++.|+.. +.......+ . .......++. |++ +.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~---~V~~~~r~~~------~~~~~~~~l-~-~~~~~~~~~~~Dl~------~~ 67 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW---HVIMACRNLK------KAEAAAQEL-G-IPPDSYTIIHIDLG------DL 67 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHHHh-h-ccCCceEEEEecCC------CH
Confidence 478999999999999999999999875 6888888632 222111111 0 0011233444 887 55
Q ss_pred HHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc----c-CCceEEEEeccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC----K-NLKMFTYVSTAF 234 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~~~~v~vSS~~ 234 (545)
+++..+++ .+|+|||+||... ..+.++..+++|+.|+.++++++... + +..++|++||..
T Consensus 68 ~~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~ 147 (322)
T PRK07453 68 DSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVT 147 (322)
T ss_pred HHHHHHHHHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccc
Confidence 55555543 4899999999632 12456788999999999998887641 1 135999999986
Q ss_pred cccCC--CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc------cCCCEEE
Q psy16252 235 SNSYR--KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA------QFFPVCI 306 (545)
Q Consensus 235 v~~~~--~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~------~~l~~~i 306 (545)
.+... .... .+.+.+.+++...... ... ....... ..-.....|+.||...+.+.+.++ .+++++.
T Consensus 148 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~-~~~~~~~-~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~ 221 (322)
T PRK07453 148 ANPKELGGKIP---IPAPADLGDLSGFEAG-FKA-PISMADG-KKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSS 221 (322)
T ss_pred cCccccCCccC---CCCccchhhhhcchhc-ccc-cccccCc-cCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEE
Confidence 64321 0000 0001010000000000 000 0000000 000112689999998776665543 3799999
Q ss_pred Eccceeecc
Q psy16252 307 FRPSIVIST 315 (545)
Q Consensus 307 ~Rp~~i~g~ 315 (545)
+|||.|+++
T Consensus 222 v~PG~v~~t 230 (322)
T PRK07453 222 LYPGCVADT 230 (322)
T ss_pred ecCCcccCC
Confidence 999999764
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=127.22 Aligned_cols=216 Identities=12% Similarity=0.037 Sum_probs=133.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++|+||||||+||.+++++|++.|+ +|+++.|+... +..... .+ ...++. |++ +
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~---~v~~~~r~~~~------~~~~~~----~~---~~~~~~~D~~------~ 62 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA---TVVVGDIDPEA------GKAAAD----EV---GGLFVPTDVT------D 62 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHHH------HHHHHH----Hc---CCcEEEeeCC------C
Confidence 5689999999999999999999999875 68888886421 111111 01 112333 777 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc---------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEeccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF---------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAF 234 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~---------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~ 234 (545)
.++++.+++ .+|+|||+||.... .+.++..+++|+.|+..+++.+.. ..+..++|++||..
T Consensus 63 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~ 142 (255)
T PRK06057 63 EDAVNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFV 142 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchh
Confidence 555555554 57999999986431 134677889999999888776642 11346899999864
Q ss_pred c-ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHh----c-cCCCEEEEc
Q psy16252 235 S-NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEE----A-QFFPVCIFR 308 (545)
Q Consensus 235 v-~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~----~-~~l~~~i~R 308 (545)
. .+.. .....|+.||+..+.+.+.. . .+++++++|
T Consensus 143 ~~~g~~---------------------------------------~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~ 183 (255)
T PRK06057 143 AVMGSA---------------------------------------TSQISYTASKGGVLAMSRELGVQFARQGIRVNALC 183 (255)
T ss_pred hccCCC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEe
Confidence 3 3211 01157999997666665543 3 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.+.++..... +. ..+........ ..+ .-.+..++++++++..++..... ...+..+.+
T Consensus 184 pg~v~t~~~~~~--~~---~~~~~~~~~~~-----~~~-----~~~~~~~~~~a~~~~~l~~~~~~-----~~~g~~~~~ 243 (255)
T PRK06057 184 PGPVNTPLLQEL--FA---KDPERAARRLV-----HVP-----MGRFAEPEEIAAAVAFLASDDAS-----FITASTFLV 243 (255)
T ss_pred eCCcCCchhhhh--cc---CCHHHHHHHHh-----cCC-----CCCCcCHHHHHHHHHHHhCcccc-----CccCcEEEE
Confidence 999977632211 00 01111111000 011 12478899999998877654332 123556666
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 244 ~~g 246 (255)
T PRK06057 244 DGG 246 (255)
T ss_pred CCC
Confidence 543
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-12 Score=124.26 Aligned_cols=215 Identities=12% Similarity=0.032 Sum_probs=137.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
++++||||+|+||.++++.|++.|+ +|+++.|+.. . ........ ... ......++. |+. +.+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~---~vi~~~r~~~--~---~~~~~~~~-~~~-~~~~~~~~~~D~~------~~~~ 66 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY---RVIATYFSGN--D---CAKDWFEE-YGF-TEDQVRLKELDVT------DTEE 66 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCcH--H---HHHHHHHH-hhc-cCCeEEEEEcCCC------CHHH
Confidence 6899999999999999999999864 7888888753 1 11111110 000 011233444 777 4555
Q ss_pred HHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEeccccccC
Q psy16252 177 KRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 177 ~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v~~~ 238 (545)
+.++++ .+|+|||+||... ..+.++..+++|+.++.++.+.+ ++. +..+||++||......
T Consensus 67 v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~~~~~~ 145 (245)
T PRK12824 67 CAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSVNGLKG 145 (245)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECChhhccC
Confidence 555443 5899999998652 13456778899999999986554 443 5679999999866532
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
.. ....|+.||...+.+++.++ .++++++++||.+.
T Consensus 146 ~~---------------------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~ 186 (245)
T PRK12824 146 QF---------------------------------------GQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIA 186 (245)
T ss_pred CC---------------------------------------CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccC
Confidence 10 11469999998888877654 57999999999987
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
++...... .......... .....+..++++++++..++..... .-.++++++.++
T Consensus 187 t~~~~~~~---------~~~~~~~~~~---------~~~~~~~~~~~va~~~~~l~~~~~~-----~~~G~~~~~~~g 241 (245)
T PRK12824 187 TPMVEQMG---------PEVLQSIVNQ---------IPMKRLGTPEEIAAAVAFLVSEAAG-----FITGETISINGG 241 (245)
T ss_pred CcchhhcC---------HHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccc-----CccCcEEEECCC
Confidence 75322110 1111111111 1122355789999999877754322 124788888876
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=126.44 Aligned_cols=201 Identities=15% Similarity=0.172 Sum_probs=129.6
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+..++++|+||||+|+||.+++++|++.|+ +|+++.|+... .+.+...+.. .....+.++. |+...
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~---~Vi~~~r~~~~---~~~~~~~l~~----~~~~~~~~~~~d~~~~--- 74 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA---TVILLGRTEEK---LEAVYDEIEA----AGGPQPAIIPLDLLTA--- 74 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC---cEEEEeCCHHH---HHHHHHHHHh----cCCCCceEEEecccCC---
Confidence 346789999999999999999999999865 68888886421 1122111110 1111233333 55421
Q ss_pred CCHHHHHHH-------hcCccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEecc
Q psy16252 172 LSPDDKRLV-------TSKVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l-------~~~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~ 233 (545)
+.+++.++ ...+|+|||+|+.... .+.++..+++|+.|+.++++.+.. ..+..+||++||.
T Consensus 75 -~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~ 153 (247)
T PRK08945 75 -TPQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSS 153 (247)
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccH
Confidence 23333322 3468999999986422 245678899999999988887742 1256799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
...... .....|+.||+..|.+++... .++++++++
T Consensus 154 ~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~ 194 (247)
T PRK08945 154 VGRQGR---------------------------------------ANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCIN 194 (247)
T ss_pred hhcCCC---------------------------------------CCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEe
Confidence 643221 111579999999999988764 578899999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
||.+-++.... ...+ .....+...++++++++.++...
T Consensus 195 pg~v~t~~~~~-----------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 232 (247)
T PRK08945 195 PGGTRTAMRAS-----------------AFPG---------EDPQKLKTPEDIMPLYLYLMGDD 232 (247)
T ss_pred cCCccCcchhh-----------------hcCc---------ccccCCCCHHHHHHHHHHHhCcc
Confidence 99875531110 0000 00123577899999999987543
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-13 Score=130.55 Aligned_cols=217 Identities=12% Similarity=0.080 Sum_probs=138.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||.+++++|++.|+ +|++..|+.. +++... ..++.. ....+. |++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~----~~l~~~~~~~~~~~~D~~----- 68 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA---QVAIAARHLD------ALEKLA----DEIGTSGGKVVPVCCDVS----- 68 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCHH------HHHHHH----HHHHhcCCeEEEEEccCC-----
Confidence 4589999999999999999999999876 6777777632 122211 111111 122233 887
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecc
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~ 233 (545)
+.+++.+++ ..+|++|||||.... .+.++..+++|+.++..+++++... +.-.++|++||.
T Consensus 69 -~~~~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~ 147 (253)
T PRK05867 69 -QHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASM 147 (253)
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcH
Confidence 445555544 378999999997532 2456778899999999999887542 112468999987
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
+...... | .....|+.||+..+.+++.++ .|+++..++
T Consensus 148 ~~~~~~~---------~----------------------------~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~ 190 (253)
T PRK05867 148 SGHIINV---------P----------------------------QQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVS 190 (253)
T ss_pred HhcCCCC---------C----------------------------CCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEee
Confidence 6431100 0 011579999999999998875 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|-.+.... . .......... . ..-.+...+|||++++.++..... ...+.++.+
T Consensus 191 PG~v~t~~~~~-------~---~~~~~~~~~~----~-----~~~r~~~p~~va~~~~~L~s~~~~-----~~tG~~i~v 246 (253)
T PRK05867 191 PGYILTELVEP-------Y---TEYQPLWEPK----I-----PLGRLGRPEELAGLYLYLASEASS-----YMTGSDIVI 246 (253)
T ss_pred cCCCCCccccc-------c---hHHHHHHHhc----C-----CCCCCcCHHHHHHHHHHHcCcccC-----CcCCCeEEE
Confidence 99986542211 1 0111111111 0 112356889999999988764322 123566766
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 247 dgG 249 (253)
T PRK05867 247 DGG 249 (253)
T ss_pred CCC
Confidence 554
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=126.50 Aligned_cols=219 Identities=14% Similarity=0.114 Sum_probs=137.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||.++++.|++.|+ +|+++.|+.. .++.... .++.. ...++. |++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~---~v~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~----- 65 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA---KVVVGARRQA------ELDQLVA----EIRAEGGEAVALAGDVR----- 65 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCcEEEEEcCCC-----
Confidence 3578999999999999999999999875 6888888743 1222111 11111 122333 777
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.++++.+++ .+|++||+||.... .+.++..+++|+.++..+++.+... .+..++|++||.
T Consensus 66 -~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~ 144 (254)
T PRK07478 66 -DEAYAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTF 144 (254)
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEech
Confidence 4455555543 68999999996421 1446778999999888876654431 244689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
....... .....|+.||+..+.+++.++ .++++.+++
T Consensus 145 ~~~~~~~--------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 186 (254)
T PRK07478 145 VGHTAGF--------------------------------------PGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALL 186 (254)
T ss_pred HhhccCC--------------------------------------CCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEe
Confidence 6542110 011579999999999988765 579999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|-.+.... +. . . ... ....... .....+...+|+|++++.++..... ...+.++.+
T Consensus 187 PG~v~t~~~~~---~~-~--~-~~~-~~~~~~~--------~~~~~~~~~~~va~~~~~l~s~~~~-----~~~G~~~~~ 245 (254)
T PRK07478 187 PGGTDTPMGRA---MG-D--T-PEA-LAFVAGL--------HALKRMAQPEEIAQAALFLASDAAS-----FVTGTALLV 245 (254)
T ss_pred eCcccCccccc---cc-C--C-HHH-HHHHHhc--------CCCCCCcCHHHHHHHHHHHcCchhc-----CCCCCeEEe
Confidence 99986542111 00 0 0 011 1111110 0112356789999999988764332 123566665
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 246 dgg 248 (254)
T PRK07478 246 DGG 248 (254)
T ss_pred CCc
Confidence 443
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-13 Score=128.78 Aligned_cols=205 Identities=11% Similarity=0.102 Sum_probs=135.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||+++++.|++.|. +|+++.|+.. .+..... .++.. ...++. |++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~---~v~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~Dl~----- 70 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA---HVLVNGRNAA------TLEAAVA----ALRAAGGAAEALAFDIA----- 70 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC---eEEEEeCCHH------HHHHHHH----HHHhcCCceEEEEccCC-----
Confidence 4689999999999999999999999865 6888888642 1222111 11111 223333 877
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+++..+++ .+|+|||+|+.... .+.++..+++|+.++.++++.+... .+..+||++||..
T Consensus 71 -~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~ 149 (256)
T PRK06124 71 -DEEAVAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIA 149 (256)
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeech
Confidence 4555555443 56999999997421 2456778899999999999776541 2457899999986
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||...+.+++..+ .++++..++|
T Consensus 150 ~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~p 190 (256)
T PRK06124 150 GQVAR---------------------------------------AGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAP 190 (256)
T ss_pred hccCC---------------------------------------CCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 54221 111679999999998887654 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
|.|.++..... .....+....... . ....+++++|++.+++.++....
T Consensus 191 g~v~t~~~~~~-------~~~~~~~~~~~~~-~--------~~~~~~~~~~~a~~~~~l~~~~~ 238 (256)
T PRK06124 191 GYFATETNAAM-------AADPAVGPWLAQR-T--------PLGRWGRPEEIAGAAVFLASPAA 238 (256)
T ss_pred CCccCcchhhh-------ccChHHHHHHHhc-C--------CCCCCCCHHHHHHHHHHHcCccc
Confidence 99987632210 0011111111111 1 11237889999999999887643
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=127.16 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=124.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++++|+||||||+||++++++|++.|. .+|+++.|+.... .+.+.+.+. ........++. |+++ .
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg--~~V~~~~r~~~~~--~~~~~~~l~----~~~~~~v~~~~~D~~~------~ 72 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAP--ARVVLAALPDDPR--RDAAVAQMK----AAGASSVEVIDFDALD------T 72 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCC--CeEEEEeCCcchh--HHHHHHHHH----hcCCCceEEEEecCCC------h
Confidence 468999999999999999999999841 3788888875420 111111010 00011234444 8874 3
Q ss_pred HHH----HHHh--cCccEEEEccccccch-------HHHHHHHHHhHHHHHHH----HHHHHHccCCceEEEEecccccc
Q psy16252 175 DDK----RLVT--SKVNLVFHCAATLRFD-------EELKEAIRTNMCATQTM----LDLAKQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 175 ~~~----~~l~--~~vd~Vih~Aa~~~~~-------~~~~~~~~~Nv~gt~~l----l~~a~~~~~~~~~v~vSS~~v~~ 237 (545)
+++ +.+. .++|++||++|..... ....+.+++|+.++..+ ++++.+. +..++|++||..+..
T Consensus 73 ~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~-~~~~iv~isS~~g~~ 151 (253)
T PRK07904 73 DSHPKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ-GFGQIIAMSSVAGER 151 (253)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc-CCceEEEEechhhcC
Confidence 333 3332 3799999999875321 11224689999988775 4555554 567999999986532
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||+....+.+... .++++++++||.|
T Consensus 152 ~~---------------------------------------~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v 192 (253)
T PRK07904 152 VR---------------------------------------RSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQV 192 (253)
T ss_pred CC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCce
Confidence 11 011469999998876655543 6899999999998
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
..+... .. . .....+..+++|+.++.++.+..
T Consensus 193 ~t~~~~---------------------~~-~-------~~~~~~~~~~~A~~i~~~~~~~~ 224 (253)
T PRK07904 193 RTRMSA---------------------HA-K-------EAPLTVDKEDVAKLAVTAVAKGK 224 (253)
T ss_pred ecchhc---------------------cC-C-------CCCCCCCHHHHHHHHHHHHHcCC
Confidence 664110 00 0 00124788999999999886543
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=124.24 Aligned_cols=211 Identities=14% Similarity=0.059 Sum_probs=138.4
Q ss_pred EEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh-hcCCCccc-CCCCCCCCCCHHHHH
Q psy16252 101 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK-FTCSTSKE-SAQAPDLGLSPDDKR 178 (545)
Q Consensus 101 lITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~-~~~~~~~~-Dl~~~~lgl~~~~~~ 178 (545)
+||||+|+||++++++|+++|+ +|+++.|+.. ++.... ..++ ..+..++. |++ +.+++.
T Consensus 1 lItGas~~iG~~~a~~l~~~G~---~v~~~~r~~~------~~~~~~----~~~~~~~~~~~~~~Dl~------~~~~~~ 61 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGA---RVTIASRSRD------RLAAAA----RALGGGAPVRTAALDIT------DEAAVD 61 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHH----HHHhcCCceEEEEccCC------CHHHHH
Confidence 5999999999999999999875 6888888632 121111 1111 11233444 887 566677
Q ss_pred HHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccC
Q psy16252 179 LVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYK 248 (545)
Q Consensus 179 ~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~ 248 (545)
.+++ .+|++||+|+.... .+.++..+++|+.++.+++++.... +..++|++||..++....
T Consensus 62 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~g~iv~~ss~~~~~~~~-------- 132 (230)
T PRK07041 62 AFFAEAGPFDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIA-PGGSLTFVSGFAAVRPSA-------- 132 (230)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhc-CCeEEEEECchhhcCCCC--------
Confidence 6665 47999999986421 2456778899999999999965543 568999999997754311
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeeccCCCCCCCCcc
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
..+.|+.||+..|.+.+..+ .+++++.++||.+-++.....+ .
T Consensus 133 -------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~---~ 178 (230)
T PRK07041 133 -------------------------------SGVLQGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLA---G 178 (230)
T ss_pred -------------------------------cchHHHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhh---c
Confidence 11679999999999998876 4688999999988554211000 0
Q ss_pred CccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 326 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
. ....++....... + . ..+..++|+|++++.++..... .+++|++.++
T Consensus 179 ~--~~~~~~~~~~~~~-~------~--~~~~~~~dva~~~~~l~~~~~~-------~G~~~~v~gg 226 (230)
T PRK07041 179 D--AREAMFAAAAERL-P------A--RRVGQPEDVANAILFLAANGFT-------TGSTVLVDGG 226 (230)
T ss_pred c--chHHHHHHHHhcC-C------C--CCCcCHHHHHHHHHHHhcCCCc-------CCcEEEeCCC
Confidence 0 0011221111111 1 0 1134679999999998875433 4788988776
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.1e-13 Score=129.89 Aligned_cols=223 Identities=12% Similarity=0.084 Sum_probs=138.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++++++||||+|+||+++++.|++.|+ +|+++.|+.. .++.... .+... +..++. |++
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~Dl~----- 69 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA---KVAILDRNQE------KAEAVVA----EIKAAGGEALAVKADVL----- 69 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCeEEEEECCCC-----
Confidence 4579999999999999999999999875 6888888632 1111111 11111 122333 777
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc----------------------hHHHHHHHHHhHHHHHHHHHHHHHc-
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF----------------------DEELKEAIRTNMCATQTMLDLAKQC- 221 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~----------------------~~~~~~~~~~Nv~gt~~ll~~a~~~- 221 (545)
+.+++..++ ..+|+|||+||.... .+.++..+++|+.++..+++.+...
T Consensus 70 -~~~~v~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 148 (278)
T PRK08277 70 -DKESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDM 148 (278)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344444443 378999999995321 2456778899999998777665431
Q ss_pred --cCCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc
Q psy16252 222 --KNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA 299 (545)
Q Consensus 222 --~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~ 299 (545)
.+..++|++||..++.... ....|+.||+..+.+++.++
T Consensus 149 ~~~~~g~ii~isS~~~~~~~~---------------------------------------~~~~Y~~sK~a~~~l~~~la 189 (278)
T PRK08277 149 VGRKGGNIINISSMNAFTPLT---------------------------------------KVPAYSAAKAAISNFTQWLA 189 (278)
T ss_pred HhcCCcEEEEEccchhcCCCC---------------------------------------CCchhHHHHHHHHHHHHHHH
Confidence 2346899999987653211 11579999999999988765
Q ss_pred -----cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccc-cc
Q psy16252 300 -----QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN-GH 373 (545)
Q Consensus 300 -----~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~-~~ 373 (545)
.++++.+++||.|.++.........+... .......... ....-+...+|+|++++.++.. ..
T Consensus 190 ~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~--~~~~~~~~~~---------~p~~r~~~~~dva~~~~~l~s~~~~ 258 (278)
T PRK08277 190 VHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSL--TERANKILAH---------TPMGRFGKPEELLGTLLWLADEKAS 258 (278)
T ss_pred HHhCccCeEEEEEEeccCcCcchhhhhccccccc--hhHHHHHhcc---------CCccCCCCHHHHHHHHHHHcCcccc
Confidence 58999999999998763221100000000 0111111110 1112356789999999988765 32
Q ss_pred cccCCCCCCCCEEEeecC
Q psy16252 374 ERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 374 ~~~~~~~~~~~vy~i~~~ 391 (545)
. ...+.+..+.++
T Consensus 259 ~-----~~tG~~i~vdgG 271 (278)
T PRK08277 259 S-----FVTGVVLPVDGG 271 (278)
T ss_pred C-----CcCCCEEEECCC
Confidence 2 123566666544
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.5e-13 Score=128.59 Aligned_cols=211 Identities=16% Similarity=0.131 Sum_probs=132.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+++++||||+|+||+++++.|+++|+ +|+++.|+.. ..+....... ......++. |++ +
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~---~Vv~~~r~~~---~~~~~~~~~~------~~~~~~~~~~Dl~------~ 65 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGA---NLILLDISPE---IEKLADELCG------RGHRCTAVVADVR------D 65 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEecCCHH---HHHHHHHHHH------hCCceEEEECCCC------C
Confidence 4579999999999999999999999875 6888877632 1111111100 001222333 787 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+++..+++ .+|+|||+||.... .+.++..+++|+.++.++++.+... .+..++|++||....
T Consensus 66 ~~~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~ 145 (263)
T PRK08226 66 PASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGD 145 (263)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhc
Confidence 555555544 67999999996432 2345677899999999999887541 234689999997542
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... .....|+.+|...|.+++.++ .+++++.++||.
T Consensus 146 ~~~~--------------------------------------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~ 187 (263)
T PRK08226 146 MVAD--------------------------------------PGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGY 187 (263)
T ss_pred ccCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCc
Confidence 1100 011579999999998887765 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccc
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 371 (545)
+.++........... ..+...+..+..+. ....+.+.+|+|++++.++..
T Consensus 188 v~t~~~~~~~~~~~~-~~~~~~~~~~~~~~---------p~~~~~~~~~va~~~~~l~~~ 237 (263)
T PRK08226 188 VRTPMAESIARQSNP-EDPESVLTEMAKAI---------PLRRLADPLEVGELAAFLASD 237 (263)
T ss_pred ccCHHHHhhhhhccC-CCcHHHHHHHhccC---------CCCCCCCHHHHHHHHHHHcCc
Confidence 987632211110000 01111222222111 112356889999998887654
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-12 Score=123.93 Aligned_cols=212 Identities=14% Similarity=0.060 Sum_probs=136.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|+++||||+|+||.++++.|++.|+ +|+++.|+...... ....++. |++++
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~---~v~~~~r~~~~~~~-----------------~~~~~~~~D~~~~----- 57 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGA---QVYGVDKQDKPDLS-----------------GNFHFLQLDLSDD----- 57 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCC---EEEEEeCCcccccC-----------------CcEEEEECChHHH-----
Confidence 4579999999999999999999999875 67777776432110 0111222 66532
Q ss_pred HHHHHHHhcCccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCcc
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKNI 242 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~i 242 (545)
.+...+....+|+|||+||... ..+.++..+++|+.|+.++++++... .+..++|++||.+.....
T Consensus 58 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--- 134 (235)
T PRK06550 58 LEPLFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAG--- 134 (235)
T ss_pred HHHHHHhhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC---
Confidence 1333344467999999999531 12456778999999999999987642 134589999998764321
Q ss_pred cccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCC
Q psy16252 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 243 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~ 317 (545)
.....|+.+|...+.+.+..+ .++++++++||.|.++..
T Consensus 135 ------------------------------------~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~ 178 (235)
T PRK06550 135 ------------------------------------GGGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMT 178 (235)
T ss_pred ------------------------------------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCccc
Confidence 112579999998888777654 589999999999977632
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.. .+. ...+....... .....+...+|+|++++.++..... ...+.++.+.++
T Consensus 179 ~~--~~~-----~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~l~s~~~~-----~~~g~~~~~~gg 231 (235)
T PRK06550 179 AA--DFE-----PGGLADWVARE---------TPIKRWAEPEEVAELTLFLASGKAD-----YMQGTIVPIDGG 231 (235)
T ss_pred cc--ccC-----chHHHHHHhcc---------CCcCCCCCHHHHHHHHHHHcChhhc-----cCCCcEEEECCc
Confidence 21 111 11111111111 1123367789999999998855432 123566665543
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=125.29 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=128.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+||||||+||.++++.|++.|+ +|+++.|.... .......+.. ....+..++. |+++ .++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~---~Vi~~~r~~~~------~~~~~~~~~~-~~~~~~~~~~~Dl~~------~~~ 65 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA---RLYLAARDVER------LERLADDLRA-RGAVAVSTHELDILD------TAS 65 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC---EEEEEeCCHHH------HHHHHHHHHH-hcCCeEEEEecCCCC------hHH
Confidence 6899999999999999999999875 68888887431 1111111100 0011233444 8873 445
Q ss_pred HHHHhc----CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCcc
Q psy16252 177 KRLVTS----KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKNI 242 (545)
Q Consensus 177 ~~~l~~----~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~i 242 (545)
+..+++ .+|+|||+||.... .+.+...+++|+.++.++++.+... .+..+||++||.+.....
T Consensus 66 ~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--- 142 (243)
T PRK07102 66 HAAFLDSLPALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGR--- 142 (243)
T ss_pred HHHHHHHHhhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCC---
Confidence 554443 57999999986431 2334567899999999999887642 245789999998543211
Q ss_pred cccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCC
Q psy16252 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 243 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~ 317 (545)
.....|+.||+..+.+.+..+ .++++.+++||.|.++..
T Consensus 143 ------------------------------------~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~ 186 (243)
T PRK07102 143 ------------------------------------ASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMT 186 (243)
T ss_pred ------------------------------------CCCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhh
Confidence 011469999999988887763 689999999999877521
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.. . . .+ ..-++.++++|++++.++...
T Consensus 187 ~~-------~------------~----~~-----~~~~~~~~~~a~~i~~~~~~~ 213 (243)
T PRK07102 187 AG-------L------------K----LP-----GPLTAQPEEVAKDIFRAIEKG 213 (243)
T ss_pred hc-------c------------C----CC-----ccccCCHHHHHHHHHHHHhCC
Confidence 10 0 0 00 112567899999999887643
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=126.57 Aligned_cols=215 Identities=14% Similarity=0.075 Sum_probs=132.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl~ 173 (545)
++|+||||+|+||.+++++|++.|+ .|+++ .|+.. ...+... .+.. .....+. |+. +
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~---~v~~~~~~~~~------~~~~~~~----~~~~~~~~~~~~~~D~~------d 62 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY---TVAVNYQQNLH------AAQEVVN----LITQAGGKAFVLQADIS------D 62 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCChH------HHHHHHH----HHHhCCCeEEEEEccCC------C
Confidence 5799999999999999999999876 45543 34321 1111111 1111 1122333 887 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc------cCCceEEEEec
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC------KNLKMFTYVST 232 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~------~~~~~~v~vSS 232 (545)
.+++..+++ .+|+|||+|+.... .+.++..+++|+.++.++++.+... .+..+||++||
T Consensus 63 ~~~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS 142 (247)
T PRK09730 63 ENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSS 142 (247)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 555655554 46899999996421 2345678899999998888766542 12356999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
........ .....|+.+|...|.+++..+ .+++++++
T Consensus 143 ~~~~~~~~--------------------------------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i 184 (247)
T PRK09730 143 AASRLGAP--------------------------------------GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCV 184 (247)
T ss_pred hhhccCCC--------------------------------------CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEE
Confidence 86542210 001469999999998887654 58999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
|||.++++..... ...........+. + ..-..+++|+|++++.++..... ...+..|.
T Consensus 185 ~pg~~~~~~~~~~--------~~~~~~~~~~~~~-~--------~~~~~~~~dva~~~~~~~~~~~~-----~~~g~~~~ 242 (247)
T PRK09730 185 RPGFIYTEMHASG--------GEPGRVDRVKSNI-P--------MQRGGQPEEVAQAIVWLLSDKAS-----YVTGSFID 242 (247)
T ss_pred EeCCCcCcccccC--------CCHHHHHHHHhcC-C--------CCCCcCHHHHHHHHHhhcChhhc-----CccCcEEe
Confidence 9999999743210 0111111111111 1 01123789999999988865422 12356776
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 243 ~~g~ 246 (247)
T PRK09730 243 LAGG 246 (247)
T ss_pred cCCC
Confidence 6553
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=123.80 Aligned_cols=213 Identities=10% Similarity=0.125 Sum_probs=133.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|+|+||||+|+||++++++|++.|. +|++..|... +++++.... + ...++. |++ +
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~---~v~~~~~~~~-----~~~~~l~~~----~---~~~~~~~D~~------~ 62 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGA---NVRFTYAGSK-----DAAERLAQE----T---GATAVQTDSA------D 62 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCCCH-----HHHHHHHHH----h---CCeEEecCCC------C
Confidence 4579999999999999999999999865 5666655421 112211111 0 122233 766 4
Q ss_pred HHHHHHHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH-ccCCceEEEEeccccccCCCcc
Q psy16252 174 PDDKRLVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ-CKNLKMFTYVSTAFSNSYRKNI 242 (545)
Q Consensus 174 ~~~~~~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~~~v~vSS~~v~~~~~~i 242 (545)
.+.+.++++ .+|++||+||.... .+.++..+++|+.|+..+++.+.. .....++|++||.......
T Consensus 63 ~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~--- 139 (237)
T PRK12742 63 RDAVIDVVRKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRMP--- 139 (237)
T ss_pred HHHHHHHHHHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccCC---
Confidence 444544443 58999999987422 245678899999999999766554 2234689999997642110
Q ss_pred cccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCC
Q psy16252 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 243 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~ 317 (545)
. .....|+.+|+..|.+++..+ .++++++++||.+..+..
T Consensus 140 ------~-----------------------------~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~ 184 (237)
T PRK12742 140 ------V-----------------------------AGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDAN 184 (237)
T ss_pred ------C-----------------------------CCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcc
Confidence 0 111679999999999998764 679999999999866421
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.. ..+ ..... ....+ ...+...+|+++++..++..... ...+.++.+.+
T Consensus 185 ~~--------~~~--~~~~~-~~~~~--------~~~~~~p~~~a~~~~~l~s~~~~-----~~~G~~~~~dg 233 (237)
T PRK12742 185 PA--------NGP--MKDMM-HSFMA--------IKRHGRPEEVAGMVAWLAGPEAS-----FVTGAMHTIDG 233 (237)
T ss_pred cc--------ccH--HHHHH-HhcCC--------CCCCCCHHHHHHHHHHHcCcccC-----cccCCEEEeCC
Confidence 10 001 11111 11100 11346789999999888754332 12355665544
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=130.83 Aligned_cols=198 Identities=13% Similarity=0.159 Sum_probs=129.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++++|+||||||+||+++++.|++.|+ +|+++.|+.. +++.... .++.. ...++. |++
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~---~Vvl~~R~~~------~l~~~~~----~l~~~g~~~~~v~~Dv~----- 67 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA---KVVLLARGEE------GLEALAA----EIRAAGGEALAVVADVA----- 67 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHH----HHHHcCCcEEEEEecCC-----
Confidence 4578999999999999999999999875 6888888632 2222111 11111 122333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~ 233 (545)
+.++++.+++ .+|++||+|+...+ .+.++..+++|+.|+.++.+.+. +. +..+||++||.
T Consensus 68 -d~~~v~~~~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~isS~ 145 (334)
T PRK07109 68 -DAEAVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVGSA 145 (334)
T ss_pred -CHHHHHHHHHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeCCh
Confidence 5556655543 68999999996432 24456778999888777655543 33 35789999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEE
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCI 306 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i 306 (545)
.++.... ....|+.||+..+.+.+..+ .++.+++
T Consensus 146 ~~~~~~~---------------------------------------~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~ 186 (334)
T PRK07109 146 LAYRSIP---------------------------------------LQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTM 186 (334)
T ss_pred hhccCCC---------------------------------------cchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 7764311 11579999998888776543 3689999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
++||.|.++.. .|. .... + ........+..++|+|++++.++.++
T Consensus 187 v~Pg~v~T~~~----~~~----------~~~~-~------~~~~~~~~~~~pe~vA~~i~~~~~~~ 231 (334)
T PRK07109 187 VQPPAVNTPQF----DWA----------RSRL-P------VEPQPVPPIYQPEVVADAILYAAEHP 231 (334)
T ss_pred EeCCCccCchh----hhh----------hhhc-c------ccccCCCCCCCHHHHHHHHHHHHhCC
Confidence 99999865411 010 0000 0 01111234678999999999998765
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-12 Score=123.62 Aligned_cols=222 Identities=13% Similarity=0.099 Sum_probs=139.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|.||+++++.|.+.|+ +|+++.|+.. .++.....+...........+. |++ +
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~---~v~~~~r~~~------~~~~~~~~l~~~~~~~~~~~~~~Dl~------~ 71 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA---DVLIVARDAD------ALAQARDELAEEFPEREVHGLAADVS------D 71 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHH------HHHHHHHHHHhhCCCCeEEEEECCCC------C
Confidence 4579999999999999999999999876 6888888632 2222111111100011222333 777 4
Q ss_pred HHHHHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEeccccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~v~ 236 (545)
.+++..++ ..+|+|||+||... ..+.++..+.+|+.++.++++++.. ..+..++|++||.++.
T Consensus 72 ~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~ 151 (257)
T PRK09242 72 DEDRRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGL 151 (257)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccC
Confidence 44444433 36899999999632 1355677889999999999988753 1245789999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||...+.+++.++ .+++++.++||.
T Consensus 152 ~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~ 192 (257)
T PRK09242 152 THVR---------------------------------------SGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWY 192 (257)
T ss_pred CCCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECC
Confidence 4321 11579999999999988764 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.++.... +... ..+........ ...-+...+|+++++..++..... ...++.+++.++
T Consensus 193 i~t~~~~~---~~~~----~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~-----~~~g~~i~~~gg 251 (257)
T PRK09242 193 IRTPLTSG---PLSD----PDYYEQVIERT---------PMRRVGEPEEVAAAVAFLCMPAAS-----YITGQCIAVDGG 251 (257)
T ss_pred CCCccccc---ccCC----hHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc-----cccCCEEEECCC
Confidence 97764221 1100 11111111110 112244678999999888754322 113566666543
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=125.80 Aligned_cols=223 Identities=14% Similarity=0.116 Sum_probs=141.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|.. .|+++.|.... ..... ..+... ...++. |++
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~--~V~~~~r~~~~---~~~~~-------~~l~~~~~~~~~~~~D~~----- 66 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAA--GLVICGRNAEK---GEAQA-------AELEALGAKAVFVQADLS----- 66 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCC--eEEEEcCCHHH---HHHHH-------HHHHhcCCeEEEEEccCC-----
Confidence 45799999999999999999999998652 48888886321 11111 111111 122233 777
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~ 233 (545)
+.+++.++++ ++|+|||+||... ..+.++..+++|+.++.++++.+... ....++|++||.
T Consensus 67 -~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~ 145 (260)
T PRK06198 67 -DVEDCRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSM 145 (260)
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 4455555443 5899999999643 22445677899999999999887542 113579999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.+... ..+.|+.+|...|.+.+..+ .+++++.++
T Consensus 146 ~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~ 186 (260)
T PRK06198 146 SAHGGQP---------------------------------------FLAAYCASKGALATLTRNAAYALLRNRIRVNGLN 186 (260)
T ss_pred ccccCCC---------------------------------------CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEe
Confidence 7654321 12679999999999988654 578999999
Q ss_pred cceeeccCCCCCCCCccCc-cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 309 PSIVISTWKEPIPGWIDNL-YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
||.+.++...... ..+ .....+...... ......+++++|++++++.++..... ...++++.
T Consensus 187 pg~~~t~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~~l~~~~~~-----~~~G~~~~ 249 (260)
T PRK06198 187 IGWMATEGEDRIQ---REFHGAPDDWLEKAAA---------TQPFGRLLDPDEVARAVAFLLSDESG-----LMTGSVID 249 (260)
T ss_pred eccccCcchhhhh---hhccCCChHHHHHHhc---------cCCccCCcCHHHHHHHHHHHcChhhC-----CccCceEe
Confidence 9999876321100 000 000111111111 11123468999999999998764432 22467887
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 250 ~~~~ 253 (260)
T PRK06198 250 FDQS 253 (260)
T ss_pred ECCc
Confidence 7765
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8e-13 Score=128.86 Aligned_cols=206 Identities=13% Similarity=0.056 Sum_probs=130.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+++++||||+|+||.+++++|++.|+ +|+++.|+.. .+......+ ... .....++. |++ +
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~~~-~~~-~~~~~~~~~Dv~------~ 69 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA---NVAVASRSQE------KVDAAVAQL-QQA-GPEGLGVSADVR------D 69 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHH-HHh-CCceEEEECCCC------C
Confidence 4579999999999999999999999875 6888888642 111111110 000 01122333 877 4
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEecccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~ 237 (545)
.+++..+++ .+|+|||+|+... ..+.++..+++|+.|+.++++++... ..-.+++++||..+..
T Consensus 70 ~~~i~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~ 149 (264)
T PRK07576 70 YAAVEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV 149 (264)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc
Confidence 555555543 5799999997532 13456778899999999999887642 1125899999986532
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||+..|.+++..+ .+++++.++||.+
T Consensus 150 ~~---------------------------------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~ 190 (264)
T PRK07576 150 PM---------------------------------------PMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPI 190 (264)
T ss_pred CC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccc
Confidence 11 111579999999999998764 6799999999988
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccc
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 371 (545)
.+.... ..+.. ............ ....+....|+|++++.++..
T Consensus 191 ~~t~~~--~~~~~-----~~~~~~~~~~~~--------~~~~~~~~~dva~~~~~l~~~ 234 (264)
T PRK07576 191 AGTEGM--ARLAP-----SPELQAAVAQSV--------PLKRNGTKQDIANAALFLASD 234 (264)
T ss_pred cCcHHH--hhccc-----CHHHHHHHHhcC--------CCCCCCCHHHHHHHHHHHcCh
Confidence 643110 00100 011111111000 112356789999999998864
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.8e-13 Score=129.17 Aligned_cols=222 Identities=11% Similarity=0.053 Sum_probs=137.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|++|||||+|+||.++++.|++.|+ +|+++.|+ .. ..+... .++.. +...+. |++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~---~vi~~~r~-~~--~~~~~~--------~~~~~~~~~~~~~~Dl~----- 64 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA---YVLAVDIA-EA--VSETVD--------KIKSNGGKAKAYHVDIS----- 64 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCc-HH--HHHHHH--------HHHhcCCeEEEEEeecC-----
Confidence 4579999999999999999999999875 68888876 21 111111 11111 122333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.+++..+++ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+ .++|++||.
T Consensus 65 -~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~ 142 (272)
T PRK08589 65 -DEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSF 142 (272)
T ss_pred -CHHHHHHHHHHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCch
Confidence 4445544443 58999999997421 2346778899999998887765542 13 589999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
...... .....|+.||+..+.+++.++ .+++++.+.
T Consensus 143 ~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~ 183 (272)
T PRK08589 143 SGQAAD---------------------------------------LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIA 183 (272)
T ss_pred hhcCCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEe
Confidence 654321 112579999999999998765 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|..+......+.. ...+...... ..... ...-.+..++|+|++++.++..... ...+.++.+
T Consensus 184 PG~v~T~~~~~~~~~~-----~~~~~~~~~~-~~~~~----~~~~~~~~~~~va~~~~~l~s~~~~-----~~~G~~i~v 248 (272)
T PRK08589 184 PGTIETPLVDKLTGTS-----EDEAGKTFRE-NQKWM----TPLGRLGKPEEVAKLVVFLASDDSS-----FITGETIRI 248 (272)
T ss_pred cCcccCchhhhhcccc-----hhhHHHHHhh-hhhcc----CCCCCCcCHHHHHHHHHHHcCchhc-----CcCCCEEEE
Confidence 9998665221110000 0000000000 00000 0111256789999999988764332 123667766
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 249 dgg 251 (272)
T PRK08589 249 DGG 251 (272)
T ss_pred CCC
Confidence 654
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.7e-13 Score=127.52 Aligned_cols=220 Identities=11% Similarity=0.064 Sum_probs=138.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|+ +|+++.|+... ..+.+.+ .++. .....+. |++
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~---~v~~~~r~~~~--~~~~~~~-------~l~~~~~~~~~~~~D~~----- 68 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGA---DVALFDLRTDD--GLAETAE-------HIEAAGRRAIQIAADVT----- 68 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCcch--HHHHHHH-------HHHhcCCceEEEEcCCC-----
Confidence 4689999999999999999999999875 67888886431 1111111 1111 1222333 877
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+++..+++ .+|+||||||.... .+.++..+++|+.++..+++.+... .+..++|++||..
T Consensus 69 -~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~ 147 (254)
T PRK06114 69 -SKADLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMS 147 (254)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchh
Confidence 4445554443 57999999997532 3456788999999998887766431 2346899999986
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
....... .....|+.||+..+.+++..+ .++++.+++|
T Consensus 148 ~~~~~~~-------------------------------------~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~P 190 (254)
T PRK06114 148 GIIVNRG-------------------------------------LLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISP 190 (254)
T ss_pred hcCCCCC-------------------------------------CCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEee
Confidence 5422100 001579999999888887764 6899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++.... +. . ......... .. + ..-+..++|++++++.++..... ...+.++.+.
T Consensus 191 G~i~t~~~~~-~~----~---~~~~~~~~~-~~------p--~~r~~~~~dva~~~~~l~s~~~~-----~~tG~~i~~d 248 (254)
T PRK06114 191 GYTATPMNTR-PE----M---VHQTKLFEE-QT------P--MQRMAKVDEMVGPAVFLLSDAAS-----FCTGVDLLVD 248 (254)
T ss_pred cCccCccccc-cc----c---hHHHHHHHh-cC------C--CCCCcCHHHHHHHHHHHcCcccc-----CcCCceEEEC
Confidence 9987753210 00 0 111111111 10 1 11256789999999988754322 1245666665
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 249 gg 250 (254)
T PRK06114 249 GG 250 (254)
T ss_pred cC
Confidence 54
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.3e-13 Score=129.83 Aligned_cols=160 Identities=15% Similarity=0.044 Sum_probs=112.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+++||||||+||++++++|++.|. +|+++.|+... +.+.. ..+......++. |++ +.++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~---~V~~~~r~~~~------~~~~~----~~~~~~~~~~~~~D~~------~~~~ 62 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW---RVGAYDINEAG------LAALA----AELGAGNAWTGALDVT------DRAA 62 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHHH------HHHHH----HHhcCCceEEEEecCC------CHHH
Confidence 6899999999999999999999875 68888886421 21111 111112333444 887 4444
Q ss_pred HHHHh--------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccC
Q psy16252 177 KRLVT--------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 177 ~~~l~--------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~ 238 (545)
+.+++ ..+|+||||||.... .+.++..+++|+.++.++++++... .+..++|++||......
T Consensus 63 v~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~ 142 (260)
T PRK08267 63 WDAALADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYG 142 (260)
T ss_pred HHHHHHHHHHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcC
Confidence 54443 357999999997531 2456788999999999999887531 23468999999855322
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.||...+.+.+..+ .++++++++||.+.
T Consensus 143 ~---------------------------------------~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~ 183 (260)
T PRK08267 143 Q---------------------------------------PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVD 183 (260)
T ss_pred C---------------------------------------CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcC
Confidence 1 111579999999988887764 57999999999986
Q ss_pred cc
Q psy16252 314 ST 315 (545)
Q Consensus 314 g~ 315 (545)
..
T Consensus 184 t~ 185 (260)
T PRK08267 184 TA 185 (260)
T ss_pred Cc
Confidence 54
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-12 Score=120.02 Aligned_cols=200 Identities=18% Similarity=0.169 Sum_probs=135.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC---CCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC---STSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~---~~~~~-Dl~~~~l 170 (545)
..+++++|||||+.||..++++|.++|+ .|+.+.|+. ++|.++..+ ++... +.++. |++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~---~liLvaR~~------~kL~~la~~----l~~~~~v~v~vi~~DLs~~-- 68 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY---NLILVARRE------DKLEALAKE----LEDKTGVEVEVIPADLSDP-- 68 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCcH------HHHHHHHHH----HHHhhCceEEEEECcCCCh--
Confidence 4679999999999999999999999976 688899974 455443332 22222 33444 99854
Q ss_pred CCCHHHHHHHhc-------CccEEEEccccccch-------HHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLRFD-------EELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~~~-------~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+++..+.. .+|++|||||...+. +...+.+++|+.+...|..+.... .+-.++|.++|.
T Consensus 69 ----~~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ 144 (265)
T COG0300 69 ----EALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSA 144 (265)
T ss_pred ----hHHHHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEech
Confidence 34444432 599999999986432 345678899999988877665431 244689999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHH----HHHHHHhc-cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAA----EQLLCEEA-QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~a----E~~~~~~~-~~l~~~i~R 308 (545)
+++.+. ++...|+.||+.. |.+-.+.. .|+.++.+-
T Consensus 145 ag~~p~---------------------------------------p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~ 185 (265)
T COG0300 145 AGLIPT---------------------------------------PYMAVYSATKAFVLSFSEALREELKGTGVKVTAVC 185 (265)
T ss_pred hhcCCC---------------------------------------cchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 876432 2226899999865 44444444 789999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
||.+...... . .+... .......-++..++||+..+.++.....
T Consensus 186 PG~~~T~f~~-------~------------~~~~~---~~~~~~~~~~~~~~va~~~~~~l~~~k~ 229 (265)
T COG0300 186 PGPTRTEFFD-------A------------KGSDV---YLLSPGELVLSPEDVAEAALKALEKGKR 229 (265)
T ss_pred cCcccccccc-------c------------ccccc---ccccchhhccCHHHHHHHHHHHHhcCCc
Confidence 9988664211 0 00000 0011234578899999999999876543
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=126.31 Aligned_cols=217 Identities=8% Similarity=0.024 Sum_probs=135.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++|+||||+|+||.+++++|++.|+ +|+++.|.... ..+++...+.. ......++. |++ +.+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~---~V~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~Dl~------~~~ 65 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF---DIGITWHSDEE--GAKETAEEVRS-----HGVRAEIRQLDLS------DLP 65 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCChH--HHHHHHHHHHh-----cCCceEEEEccCC------CHH
Confidence 57999999999999999999999976 56666554321 11222111110 011223334 887 445
Q ss_pred HHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecccccc
Q psy16252 176 DKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 176 ~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v~~ 237 (545)
+++.+++ .+|+|||+||.... .+.++..+++|+.++.++++++... ++-.++|++||.....
T Consensus 66 ~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~ 145 (256)
T PRK12743 66 EGAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT 145 (256)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC
Confidence 5444443 58999999997431 2456778999999999999987652 1125899999975432
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.+|...+.+++.++ .+++++.++||.+
T Consensus 146 ~~---------------------------------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~ 186 (256)
T PRK12743 146 PL---------------------------------------PGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAI 186 (256)
T ss_pred CC---------------------------------------CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCc
Confidence 11 011579999999999987765 5799999999999
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++.....+ .........+. + ...+.+.+|+++++..++..... ...+.++.+.++
T Consensus 187 ~t~~~~~~~---------~~~~~~~~~~~----~-----~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~~dgg 242 (256)
T PRK12743 187 ATPMNGMDD---------SDVKPDSRPGI----P-----LGRPGDTHEIASLVAWLCSEGAS-----YTTGQSLIVDGG 242 (256)
T ss_pred cCccccccC---------hHHHHHHHhcC----C-----CCCCCCHHHHHHHHHHHhCcccc-----CcCCcEEEECCC
Confidence 875321100 01111111110 0 11245789999999887654322 123566666554
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-12 Score=124.74 Aligned_cols=219 Identities=15% Similarity=0.052 Sum_probs=136.0
Q ss_pred cCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCC------HHHHHHhhHHHHHHhhhhcCCCccc-CCC
Q psy16252 96 EGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS------PQQRIDKMLDTVAISLKFTCSTSKE-SAQ 166 (545)
Q Consensus 96 ~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~------~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~ 166 (545)
++++|+|||||| .||.+++++|++.|+ .|+++.|++.+.. ..+... +....... .....++. |++
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~---~vi~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~D~~ 77 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGI---DIFFTYWSPYDKTMPWGMHDKEPVL--LKEEIESY-GVRCEHMEIDLS 77 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCC---cEEEEcCCccccccccccchhhHHH--HHHHHHhc-CCeEEEEECCCC
Confidence 578999999996 699999999999875 6888888732110 011111 11100000 11233344 887
Q ss_pred CCCCCCCHHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEE
Q psy16252 167 APDLGLSPDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTY 229 (545)
Q Consensus 167 ~~~lgl~~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~ 229 (545)
+.+++..++ ..+|+|||+||.... .+.++..+++|+.|+..+++.+... ....++|+
T Consensus 78 ------~~~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 151 (256)
T PRK12748 78 ------QPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIIN 151 (256)
T ss_pred ------CHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEE
Confidence 444444333 358999999987421 2345777899999999999887642 13368999
Q ss_pred EeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCE
Q psy16252 230 VSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPV 304 (545)
Q Consensus 230 vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~ 304 (545)
+||..++.+.. ....|+.||+..|.+++..+ .++++
T Consensus 152 ~ss~~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v 192 (256)
T PRK12748 152 LTSGQSLGPMP---------------------------------------DELAYAATKGAIEAFTKSLAPELAEKGITV 192 (256)
T ss_pred ECCccccCCCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHHHHhCeEE
Confidence 99986643210 01579999999999987764 58999
Q ss_pred EEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC
Q psy16252 305 CIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP 384 (545)
Q Consensus 305 ~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~ 384 (545)
+.++||.+..+... ......... . .+ ...+...+|+++++..++..... ...+.
T Consensus 193 ~~i~Pg~~~t~~~~------------~~~~~~~~~-~---~~-----~~~~~~~~~~a~~~~~l~~~~~~-----~~~g~ 246 (256)
T PRK12748 193 NAVNPGPTDTGWIT------------EELKHHLVP-K---FP-----QGRVGEPVDAARLIAFLVSEEAK-----WITGQ 246 (256)
T ss_pred EEEEeCcccCCCCC------------hhHHHhhhc-c---CC-----CCCCcCHHHHHHHHHHHhCcccc-----cccCC
Confidence 99999987543110 011111110 0 11 11245679999998877665332 12367
Q ss_pred EEEeecC
Q psy16252 385 IYNYVNS 391 (545)
Q Consensus 385 vy~i~~~ 391 (545)
++++.++
T Consensus 247 ~~~~d~g 253 (256)
T PRK12748 247 VIHSEGG 253 (256)
T ss_pred EEEecCC
Confidence 8887654
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-12 Score=125.34 Aligned_cols=219 Identities=12% Similarity=0.077 Sum_probs=138.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++++||||||+||++++++|++.|+ +|+++.|+... .+.+.. .+ .....++. |++ +
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~---~~~~~~-------~~-~~~~~~~~~Dl~------~ 63 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA---RVAIVDIDADN---GAAVAA-------SL-GERARFIATDIT------D 63 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHH-------Hh-CCeeEEEEecCC------C
Confidence 4579999999999999999999999876 68888886421 111111 01 11233344 887 4
Q ss_pred HHHHHHHhc-------CccEEEEcccccc------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccC
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~ 238 (545)
.+++.++++ .+|++||+||... ..+.++..+++|+.++..+++.+... .+-.++|++||......
T Consensus 64 ~~~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~ 143 (261)
T PRK08265 64 DAAIERAVATVVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFA 143 (261)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccC
Confidence 555555543 5799999999642 23556788899999999999877641 23358999999865422
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
.. ....|+.+|+..+.+++..+ .++++++++||.+.
T Consensus 144 ~~---------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~ 184 (261)
T PRK08265 144 QT---------------------------------------GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTW 184 (261)
T ss_pred CC---------------------------------------CCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCcc
Confidence 10 11579999999999888765 58999999999876
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.+...... ... ........... ...-.+...+|+|++++.++..... ...+.++.+.++
T Consensus 185 t~~~~~~~---~~~---~~~~~~~~~~~--------~p~~r~~~p~dva~~~~~l~s~~~~-----~~tG~~i~vdgg 243 (261)
T PRK08265 185 SRVMDELS---GGD---RAKADRVAAPF--------HLLGRVGDPEEVAQVVAFLCSDAAS-----FVTGADYAVDGG 243 (261)
T ss_pred Chhhhhhc---ccc---hhHHHHhhccc--------CCCCCccCHHHHHHHHHHHcCcccc-----CccCcEEEECCC
Confidence 54211100 000 00000000000 0111246789999999988764322 124667776654
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-13 Score=130.57 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=140.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+++||||||+|+||.++++.|++.|+ +|+++.|+.+ .+.+.+.+.. . .....++. |++ +
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~~~~~----~~~~~~~~~~----~-~~~~~~~~~D~~------~ 74 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGA---DIIITTHGTN----WDETRRLIEK----E-GRKVTFVQVDLT------K 74 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCcH----HHHHHHHHHh----c-CCceEEEEcCCC------C
Confidence 4579999999999999999999999875 6777777621 1222221111 0 01223334 887 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+++..+++ .+|++||+||.... .+.++..+++|+.++..+++.+... .+..++|++||..++
T Consensus 75 ~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 154 (258)
T PRK06935 75 PESAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSF 154 (258)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhc
Confidence 555555554 68999999997431 3456778899999988888766531 245689999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.+|+..|.+++.++ .++++++++||.
T Consensus 155 ~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~ 195 (258)
T PRK06935 155 QGG---------------------------------------KFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGY 195 (258)
T ss_pred cCC---------------------------------------CCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecc
Confidence 321 111579999999999988775 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|..+.....+. . .......... . ....+...+|++++++.++..... ...+.++.+.++
T Consensus 196 v~t~~~~~~~~---~----~~~~~~~~~~----~-----~~~~~~~~~dva~~~~~l~s~~~~-----~~~G~~i~~dgg 254 (258)
T PRK06935 196 IKTANTAPIRA---D----KNRNDEILKR----I-----PAGRWGEPDDLMGAAVFLASRASD-----YVNGHILAVDGG 254 (258)
T ss_pred ccccchhhccc---C----hHHHHHHHhc----C-----CCCCCCCHHHHHHHHHHHcChhhc-----CCCCCEEEECCC
Confidence 87653221110 0 0010111110 0 112367779999999887764332 123667766554
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-12 Score=126.14 Aligned_cols=204 Identities=11% Similarity=0.106 Sum_probs=130.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCH-HHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP-QQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~l 170 (545)
+++++++||||+|+||+++++.|++.|. +|+++.|+...... ...+.... ..++.. +..++. |++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~D~~---- 72 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA---NIVIAAKTAEPHPKLPGTIHTAA----EEIEAAGGQALPLVGDVR---- 72 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecccccccchhhHHHHHH----HHHHhcCCceEEEEecCC----
Confidence 4578999999999999999999999865 68888887543211 11122111 111111 222333 887
Q ss_pred CCCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.+++++||.
T Consensus 73 --~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~ 150 (273)
T PRK08278 73 --DEDQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPP 150 (273)
T ss_pred --CHHHHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 4555555543 68999999997432 2445778899999999999998642 123478888876
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
...... +. .....|+.||+..|.+++.++ .+++++.+.
T Consensus 151 ~~~~~~-------~~------------------------------~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~ 193 (273)
T PRK08278 151 LNLDPK-------WF------------------------------APHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALW 193 (273)
T ss_pred hhcccc-------cc------------------------------CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEe
Confidence 422110 00 111679999999999998775 589999999
Q ss_pred cce-eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 309 PSI-VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 309 p~~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
||. +-.+ .......+ ......+...+++|++++.++....
T Consensus 194 Pg~~i~t~-----------------~~~~~~~~--------~~~~~~~~~p~~va~~~~~l~~~~~ 234 (273)
T PRK08278 194 PRTTIATA-----------------AVRNLLGG--------DEAMRRSRTPEIMADAAYEILSRPA 234 (273)
T ss_pred CCCccccH-----------------HHHhcccc--------cccccccCCHHHHHHHHHHHhcCcc
Confidence 984 3221 00000000 0111236788999999999876543
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.4e-13 Score=129.47 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=110.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+++||||||+||+++++.|++.|+ +|+++.|+.. ++... ......++. |++ +.++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~~------~~~~~--------~~~~~~~~~~Dl~------~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY---EVWATARKAE------DVEAL--------AAAGFTAVQLDVN------DGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHH--------HHCCCeEEEeeCC------CHHH
Confidence 6899999999999999999999875 6888888642 11111 111223333 777 4455
Q ss_pred HHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccCCC
Q psy16252 177 KRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 177 ~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~~~ 240 (545)
+.+++ .++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||.+.....
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~- 137 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVT- 137 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCC-
Confidence 55444 368999999996432 2556778899999999999887541 133679999997653221
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
.....|+.||...+.+.+.++ .|+++++++||.|.++
T Consensus 138 --------------------------------------~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~ 179 (274)
T PRK05693 138 --------------------------------------PFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQ 179 (274)
T ss_pred --------------------------------------CCccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccc
Confidence 112679999999888876553 6899999999999765
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=142.21 Aligned_cols=229 Identities=11% Similarity=0.029 Sum_probs=139.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+||||||+|+||++++++|++.|. +|+++.|+... +......+-..........+. |++ +
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga---~Vvi~~r~~~~------~~~~~~~l~~~~~~~~~~~v~~Dvt------d 476 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA---HVVLADLNLEA------AEAVAAEINGQFGAGRAVALKMDVT------D 476 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEeCCHHH------HHHHHHHHHhhcCCCcEEEEECCCC------C
Confidence 5689999999999999999999999875 68888876321 111111110000001122233 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~~v 235 (545)
.+++..+++ ++|+||||||.... .+.++..+++|+.+...+++.+.. .+.-.++|++||..+
T Consensus 477 ~~~v~~a~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a 556 (676)
T TIGR02632 477 EQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNA 556 (676)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhh
Confidence 566666554 68999999997431 244677789999998877655432 211257999999754
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..|.+++.++ .++++..++||
T Consensus 557 ~~~~---------------------------------------~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg 597 (676)
T TIGR02632 557 VYAG---------------------------------------KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPD 597 (676)
T ss_pred cCCC---------------------------------------CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECC
Confidence 3221 112689999999999998765 57999999999
Q ss_pred eeeccCCCCCCCCccCcc---c--hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 311 IVISTWKEPIPGWIDNLY---G--PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~---~--~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
.|.....-...+|..... + ...+.. .+........++.++|||+++..++..... ...+.+
T Consensus 598 ~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~r~~l~r~v~peDVA~av~~L~s~~~~-----~~TG~~ 663 (676)
T TIGR02632 598 AVLQGSGIWDGEWREERAAAYGIPADELEE---------HYAKRTLLKRHIFPADIAEAVFFLASSKSE-----KTTGCI 663 (676)
T ss_pred ceecCcccccccchhhhhhcccCChHHHHH---------HHHhcCCcCCCcCHHHHHHHHHHHhCCccc-----CCcCcE
Confidence 886321100011111000 0 000000 011112233568889999999987654322 124678
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
+++.++
T Consensus 664 i~vDGG 669 (676)
T TIGR02632 664 ITVDGG 669 (676)
T ss_pred EEECCC
Confidence 888765
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-12 Score=127.23 Aligned_cols=200 Identities=14% Similarity=0.122 Sum_probs=130.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCC--Cccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS--TSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~--~~~~-Dl~~~~lg 171 (545)
+.+++|+||||||+||++++++|++.|+ +|+++.|+.. ++++... .++.... .++. |++
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~---~Vvl~~R~~~------~l~~~~~----~~~~~g~~~~~~~~Dv~----- 66 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA---RLVLAARDEE------ALQAVAE----ECRALGAEVLVVPTDVT----- 66 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHH----HHHhcCCcEEEEEeeCC-----
Confidence 3579999999999999999999999875 6888888632 2322211 1111122 2233 887
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+++++++ ..+|++|||||.... .+.++..+++|+.|+.++.+++... .+..++|++||..
T Consensus 67 -d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~ 145 (330)
T PRK06139 67 -DADQVKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLG 145 (330)
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChh
Confidence 556666655 468999999996432 2456778999999999988776431 1346899999986
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHH----Hhc--cCCCEEEEc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLC----EEA--QFFPVCIFR 308 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~----~~~--~~l~~~i~R 308 (545)
.+... .+...|+.||+..+.+.+ +.. .++.++.+.
T Consensus 146 ~~~~~---------------------------------------p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~ 186 (330)
T PRK06139 146 GFAAQ---------------------------------------PYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVY 186 (330)
T ss_pred hcCCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 54321 112579999996555444 433 379999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
||.|.++... +..+. .+. .......+...++||++++.++.++.
T Consensus 187 Pg~v~T~~~~----~~~~~-----------~~~------~~~~~~~~~~pe~vA~~il~~~~~~~ 230 (330)
T PRK06139 187 PAFMDTPGFR----HGANY-----------TGR------RLTPPPPVYDPRRVAKAVVRLADRPR 230 (330)
T ss_pred cCCccCcccc----ccccc-----------ccc------cccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 9998765211 10000 000 00112246789999999999886543
|
|
| >KOG2774|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-13 Score=120.26 Aligned_cols=251 Identities=18% Similarity=0.131 Sum_probs=164.8
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
+..+|||||+-|.+|..++..|... ++-..|+.- ++.++ .+. +.. .+-++.|+- |.
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~-yGs~~VILSDI~KPp-~~V-------~~~--------GPyIy~DIL------D~ 99 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYM-YGSECVILSDIVKPP-ANV-------TDV--------GPYIYLDIL------DQ 99 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHH-hCCccEehhhccCCc-hhh-------ccc--------CCchhhhhh------cc
Confidence 3578999999999999998877665 333345442 23222 111 000 111111443 33
Q ss_pred HHHHHHh--cCccEEEEcccccc-c-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCC
Q psy16252 175 DDKRLVT--SKVNLVFHCAATLR-F-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAH 250 (545)
Q Consensus 175 ~~~~~l~--~~vd~Vih~Aa~~~-~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~ 250 (545)
..++++. ..+|.+||..|..+ + ..+...+.++|+.|..|+++.|++. +++-|| -||++++|+..+-. |
T Consensus 100 K~L~eIVVn~RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~-kL~iFV-PSTIGAFGPtSPRN------P 171 (366)
T KOG2774|consen 100 KSLEEIVVNKRIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKH-KLKVFV-PSTIGAFGPTSPRN------P 171 (366)
T ss_pred ccHHHhhcccccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHc-CeeEee-cccccccCCCCCCC------C
Confidence 4556555 37899999887643 2 2334557799999999999999997 776444 68889988754210 0
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhh-cCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCc
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERL-SHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNL 327 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~ 327 (545)
||.. .+...+.|+.||.-||.+=+.+. -|+.+-.+|.+.+++... |-.|-.|
T Consensus 172 ----------------------TPdltIQRPRTIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~-pgggttd-- 226 (366)
T KOG2774|consen 172 ----------------------TPDLTIQRPRTIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATK-PGGGTTD-- 226 (366)
T ss_pred ----------------------CCCeeeecCceeechhHHHHHHHHHHHHhhcCccceecccCcccccCC-CCCCcch--
Confidence 0111 11222789999999998887665 688889999888877643 2223222
Q ss_pred cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHH
Q psy16252 328 YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLK 407 (545)
Q Consensus 328 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~ 407 (545)
+...-+..+..+|.- ..+-.++.+..+++..||-.+++..+..+.. .-..++||++. -.+|-.|+++.+.+
T Consensus 227 ya~A~f~~Al~~gk~-tCylrpdtrlpmmy~~dc~~~~~~~~~a~~~-----~lkrr~ynvt~---~sftpee~~~~~~~ 297 (366)
T KOG2774|consen 227 YAIAIFYDALQKGKH-TCYLRPDTRLPMMYDTDCMASVIQLLAADSQ-----SLKRRTYNVTG---FSFTPEEIADAIRR 297 (366)
T ss_pred hHHHHHHHHHHcCCc-ccccCCCccCceeehHHHHHHHHHHHhCCHH-----Hhhhheeeece---eccCHHHHHHHHHh
Confidence 222333334445553 3556789999999999999999988776543 12468999988 47999999999888
Q ss_pred hhcc
Q psy16252 408 EGVK 411 (545)
Q Consensus 408 ~~~~ 411 (545)
....
T Consensus 298 ~~p~ 301 (366)
T KOG2774|consen 298 VMPG 301 (366)
T ss_pred hCCC
Confidence 7543
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-12 Score=124.33 Aligned_cols=207 Identities=14% Similarity=0.154 Sum_probs=127.5
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDK 177 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~ 177 (545)
+|+||||+|+||.++++.|++.|+ +|+++.|+... ..+.+...+.. .........+. |++ +.+.+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~---~v~~~~r~~~~--~~~~~~~~~~~---~~~~~~~~~~~~D~~------~~~~~ 66 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA---KVFLTDINDAA--GLDAFAAEINA---AHGEGVAFAAVQDVT------DEAQW 66 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCcch--HHHHHHHHHHh---cCCCceEEEEEeecC------CHHHH
Confidence 389999999999999999999875 68888886321 11222111110 00000011122 776 45555
Q ss_pred HHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHH----HHHHHHHHHHHccCCceEEEEeccccccCC
Q psy16252 178 RLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMC----ATQTMLDLAKQCKNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 178 ~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~----gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~ 239 (545)
..++ ..+|+|||+|+.... .+.+...+++|+. +++++++.+++. +.++||++||..++...
T Consensus 67 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~ss~~~~~~~ 145 (251)
T PRK07069 67 QALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS-QPASIVNISSVAAFKAE 145 (251)
T ss_pred HHHHHHHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCcEEEEecChhhccCC
Confidence 5544 367999999997532 2345667888998 677777777765 56899999998765432
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEEcccee
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIFRPSIV 312 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~Rp~~i 312 (545)
. ....|+.+|...+.+++.++ .+++++.++||.+
T Consensus 146 ~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v 186 (251)
T PRK07069 146 P---------------------------------------DYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFI 186 (251)
T ss_pred C---------------------------------------CCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeeccc
Confidence 1 11579999999998887653 2488899999998
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.++...+... .. ........+..+. ....+..++|+|++++.++...
T Consensus 187 ~t~~~~~~~~---~~-~~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~ 233 (251)
T PRK07069 187 RTGIVDPIFQ---RL-GEEEATRKLARGV---------PLGRLGEPDDVAHAVLYLASDE 233 (251)
T ss_pred CCcchhHHhh---hc-cchhHHHHHhccC---------CCCCCcCHHHHHHHHHHHcCcc
Confidence 7764321100 00 0011111111111 1123567899999999876543
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=119.63 Aligned_cols=183 Identities=18% Similarity=0.278 Sum_probs=126.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+++||||+|.||++++++|.++ .+|+++.|+...... |++ +.+++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~----~~vi~~~r~~~~~~~------------------------D~~------~~~~~ 46 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR----HEVITAGRSSGDVQV------------------------DIT------DPASI 46 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc----CcEEEEecCCCceEe------------------------cCC------ChHHH
Confidence 47999999999999999999886 368888886431100 776 44555
Q ss_pred HHHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCCcccccc
Q psy16252 178 RLVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRKNIEEII 246 (545)
Q Consensus 178 ~~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i~E~~ 246 (545)
+.+++ ++|+|||+||.... .+.+...+++|+.++.++++++... .+-.+|+++||.......
T Consensus 47 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~------- 119 (199)
T PRK07578 47 RALFEKVGKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPI------- 119 (199)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCC-------
Confidence 55544 78999999996421 2456777899999999999988652 123579999987653211
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceeeccCCCCCCC
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVISTWKEPIPG 322 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~g~~~~~~~g 322 (545)
.....|+.||+..+.+.+..+ .++++..+.||.+-.+.
T Consensus 120 --------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~------ 161 (199)
T PRK07578 120 --------------------------------PGGASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESL------ 161 (199)
T ss_pred --------------------------------CCchHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCch------
Confidence 111579999999998887664 47899999998873321
Q ss_pred CccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 323 WIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
... + ..++ ....++.+|+|++++.++..... +++|++
T Consensus 162 ---------~~~-----~--~~~~-----~~~~~~~~~~a~~~~~~~~~~~~--------g~~~~~ 198 (199)
T PRK07578 162 ---------EKY-----G--PFFP-----GFEPVPAARVALAYVRSVEGAQT--------GEVYKV 198 (199)
T ss_pred ---------hhh-----h--hcCC-----CCCCCCHHHHHHHHHHHhcccee--------eEEecc
Confidence 000 0 0011 12368999999999988876544 666664
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-12 Score=123.69 Aligned_cols=221 Identities=12% Similarity=0.063 Sum_probs=138.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++|+||||+|+||.+++++|++.|. +|+++.|+... .+++...+. .. .....++. |++ +
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~---~v~~~~r~~~~---~~~~~~~~~----~~-~~~~~~~~~D~~------~ 67 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA---KVVVADRDAAG---GEETVALIR----EA-GGEALFVACDVT------R 67 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHHH---HHHHHHHHH----hc-CCceEEEEcCCC------C
Confidence 4579999999999999999999999865 68888887431 111111111 00 11233344 887 4
Q ss_pred HHHHHHHhc-------CccEEEEcccccc----c----hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR----F----DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~----~----~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~v 235 (545)
.+++..+++ .+|+|||+||... + .+.++..+++|+.++..+++.+.. ..+..++|++||..+
T Consensus 68 ~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~ 147 (253)
T PRK06172 68 DAEVKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAG 147 (253)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhh
Confidence 455555443 5699999999642 1 245677889999999887765432 124468999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... ....|+.||+..|.+.+.++ .++++.++.||
T Consensus 148 ~~~~~---------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG 188 (253)
T PRK06172 148 LGAAP---------------------------------------KMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPA 188 (253)
T ss_pred ccCCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeC
Confidence 54311 11679999999998887765 57999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|-.+....... ........... .. ....+...+|+++.++.++..... ...+.++++.+
T Consensus 189 ~v~t~~~~~~~~------~~~~~~~~~~~-~~--------~~~~~~~p~~ia~~~~~l~~~~~~-----~~~G~~i~~dg 248 (253)
T PRK06172 189 VIDTDMFRRAYE------ADPRKAEFAAA-MH--------PVGRIGKVEEVASAVLYLCSDGAS-----FTTGHALMVDG 248 (253)
T ss_pred CccChhhhhhcc------cChHHHHHHhc-cC--------CCCCccCHHHHHHHHHHHhCcccc-----CcCCcEEEECC
Confidence 886543221100 00111111111 10 011356789999999988765432 12467777766
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 249 g 249 (253)
T PRK06172 249 G 249 (253)
T ss_pred C
Confidence 5
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=119.29 Aligned_cols=215 Identities=12% Similarity=0.063 Sum_probs=133.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|++|||||||+||+++++.|++.|+ +|+++.|+.. ++........ . .....+.++. |++ ++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~~-----~~~~~~~~~~-~-~~~~~~~~~~~D~~------~~~~ 64 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY---RVAANCGPNE-----ERAEAWLQEQ-G-ALGFDFRVVEGDVS------SFES 64 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCCH-----HHHHHHHHHH-H-hhCCceEEEEecCC------CHHH
Confidence 5799999999999999999999875 6777777321 1222111110 0 0011233344 777 4445
Q ss_pred HHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEeccccccC
Q psy16252 177 KRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 177 ~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v~~~ 238 (545)
+..++ ..+|+|||+||... ..+.++..+++|+.++..+++.+ ++. +..++|++||.+....
T Consensus 65 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~~~~~~ 143 (242)
T TIGR01829 65 CKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINISSVNGQKG 143 (242)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhcCC
Confidence 54443 35899999998643 12455677899999988866554 333 5678999999754321
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.+|...+.+++.++ .++++++++||.+.
T Consensus 144 ~---------------------------------------~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~ 184 (242)
T TIGR01829 144 Q---------------------------------------FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIA 184 (242)
T ss_pred C---------------------------------------CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCc
Confidence 1 011579999998777776653 68999999999987
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
++...+.+ ..+......+. ....+...+++++++..++..... ...++.+.+.++
T Consensus 185 t~~~~~~~---------~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~~~~~~-----~~~G~~~~~~gg 239 (242)
T TIGR01829 185 TDMVMAMR---------EDVLNSIVAQI---------PVGRLGRPEEIAAAVAFLASEEAG-----YITGATLSINGG 239 (242)
T ss_pred Cccccccc---------hHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhc-----CccCCEEEecCC
Confidence 75322110 11221111111 112345678999998877654322 124677877765
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.3e-12 Score=122.20 Aligned_cols=219 Identities=10% Similarity=0.047 Sum_probs=135.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+++||||+|+||+++++.|++.|. +|++..|+.. ++......+ ... .....++. |++ +++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~---~Vi~~~r~~~------~~~~~~~~~-~~~-~~~~~~~~~D~~------~~~ 63 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA---NVVITGRTKE------KLEEAKLEI-EQF-PGQVLTVQMDVR------NPE 63 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHH-Hhc-CCcEEEEEecCC------CHH
Confidence 48999999999999999999999865 6888888642 111111110 000 11223344 887 445
Q ss_pred HHHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---c-CCceEEEEecccccc
Q psy16252 176 DKRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---K-NLKMFTYVSTAFSNS 237 (545)
Q Consensus 176 ~~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~-~~~~~v~vSS~~v~~ 237 (545)
++..++ ..+|+|||+||... ..+.++..+++|+.|+.++++++... . ...++|++||.+...
T Consensus 64 ~~~~~~~~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~ 143 (252)
T PRK07677 64 DVQKMVEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD 143 (252)
T ss_pred HHHHHHHHHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc
Confidence 555444 36799999998532 12446778999999999999988531 1 236899999986542
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc------cCCCEEEEccce
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA------QFFPVCIFRPSI 311 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~------~~l~~~i~Rp~~ 311 (545)
.. .....|+.||+..+.+.+..+ .|+++..++||.
T Consensus 144 ~~---------------------------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~ 184 (252)
T PRK07677 144 AG---------------------------------------PGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGP 184 (252)
T ss_pred CC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecc
Confidence 21 112569999999998887643 389999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.+.... ............+.... ....+...+|+++++..++..... ...+.++.+.++
T Consensus 185 v~~~~~~------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~-----~~~g~~~~~~gg 244 (252)
T PRK07677 185 IERTGGA------DKLWESEEAAKRTIQSV---------PLGRLGTPEEIAGLAYFLLSDEAA-----YINGTCITMDGG 244 (252)
T ss_pred ccccccc------ccccCCHHHHHHHhccC---------CCCCCCCHHHHHHHHHHHcCcccc-----ccCCCEEEECCC
Confidence 8743110 00111112222221111 112367789999988887654321 123566666554
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=126.95 Aligned_cols=160 Identities=17% Similarity=0.072 Sum_probs=109.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||.+++++|++.|. +|++..|.... ..+.+. ..++.. .+.++. |++
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga---~Vv~~~~~~~~--~~~~~~-------~~i~~~g~~~~~~~~Dv~----- 72 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGA---TVVVNDVASAL--DASDVL-------DEIRAAGAKAVAVAGDIS----- 72 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCCchh--HHHHHH-------HHHHhcCCeEEEEeCCCC-----
Confidence 5689999999999999999999999875 57766664321 111111 111111 122333 887
Q ss_pred CCHHHHHHHh------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-----c-----CCceEE
Q psy16252 172 LSPDDKRLVT------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-----K-----NLKMFT 228 (545)
Q Consensus 172 l~~~~~~~l~------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-----~-----~~~~~v 228 (545)
+.+.+..++ ..+|+|||+||.... .+.++..+++|+.|+.++++++... . .-.++|
T Consensus 73 -d~~~~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv 151 (306)
T PRK07792 73 -QRATADELVATAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIV 151 (306)
T ss_pred -CHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 445555544 368999999997532 2456778899999999999887531 0 014899
Q ss_pred EEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCC
Q psy16252 229 YVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFP 303 (545)
Q Consensus 229 ~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~ 303 (545)
++||....... .....|+.||...+.+.+.++ .+++
T Consensus 152 ~isS~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~ 192 (306)
T PRK07792 152 NTSSEAGLVGP---------------------------------------VGQANYGAAKAGITALTLSAARALGRYGVR 192 (306)
T ss_pred EECCcccccCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 99997654221 111579999999999987654 5899
Q ss_pred EEEEccce
Q psy16252 304 VCIFRPSI 311 (545)
Q Consensus 304 ~~i~Rp~~ 311 (545)
+..+.|+.
T Consensus 193 vn~i~Pg~ 200 (306)
T PRK07792 193 ANAICPRA 200 (306)
T ss_pred EEEECCCC
Confidence 99999973
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-12 Score=124.67 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=129.1
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++++|+||||+|+||.+++++|+++|+ +|+++.|+.. ++......+ . ...+..++. |++ +.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~~~-~--~~~~~~~~~~D~~------d~ 65 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA---RLLLVGRNAE------KLEALAARL-P--YPGRHRWVVADLT------SE 65 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHHHH-h--cCCceEEEEccCC------CH
Confidence 478999999999999999999999875 6888888632 122211111 0 011233444 887 44
Q ss_pred HHHHHHh------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccC
Q psy16252 175 DDKRLVT------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 175 ~~~~~l~------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~ 238 (545)
+++..+. ..+|+|||+||.... .+.+...+++|+.|+.++++.+... .+..++|++||......
T Consensus 66 ~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~ 145 (263)
T PRK09072 66 AGREAVLARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIG 145 (263)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcC
Confidence 4554443 368999999997542 2445778899999999999887641 23467899988754321
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.||...+.+++.++ .+++++.+.||.+.
T Consensus 146 ~---------------------------------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~ 186 (263)
T PRK09072 146 Y---------------------------------------PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATR 186 (263)
T ss_pred C---------------------------------------CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccc
Confidence 1 111579999998877776554 57899999999875
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
++.... .. ... .......+..++|+|++++.++....
T Consensus 187 t~~~~~-------------~~-----~~~-----~~~~~~~~~~~~~va~~i~~~~~~~~ 223 (263)
T PRK09072 187 TAMNSE-------------AV-----QAL-----NRALGNAMDDPEDVAAAVLQAIEKER 223 (263)
T ss_pred ccchhh-------------hc-----ccc-----cccccCCCCCHHHHHHHHHHHHhCCC
Confidence 532110 00 000 00011246788999999999987653
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.3e-12 Score=121.44 Aligned_cols=224 Identities=13% Similarity=0.088 Sum_probs=139.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++++++||||+|+||.+++++|++.|+ +|+++.|+.. ++.+... .++.. +..++. |++
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~---~vv~~~~~~~------~~~~~~~----~~~~~~~~~~~~~~Dl~----- 69 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA---TIVFNDINQE------LVDKGLA----AYRELGIEAHGYVCDVT----- 69 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHH------HHHHHHH----HHHhcCCceEEEEcCCC-----
Confidence 3579999999999999999999999875 5777766532 2221111 11111 222333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.++++.+++ .+|+|||+||... ..+.+...+++|+.|+..+.+.+... .+..++|++||..
T Consensus 70 -~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~ 148 (265)
T PRK07097 70 -DEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMM 148 (265)
T ss_pred -CHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCcc
Confidence 5556655553 4899999999753 22456778899999999888776541 2457899999975
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... .....|+.+|...+.+++.++ .+++++.++|
T Consensus 149 ~~~~~---------------------------------------~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~P 189 (265)
T PRK07097 149 SELGR---------------------------------------ETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGP 189 (265)
T ss_pred ccCCC---------------------------------------CCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEe
Confidence 43211 111579999999999998875 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++...+...-... .....+...+.. . .....+...+|+|++++.++..... ...+.++.+.
T Consensus 190 g~v~t~~~~~~~~~~~~-~~~~~~~~~~~~-~--------~~~~~~~~~~dva~~~~~l~~~~~~-----~~~g~~~~~~ 254 (265)
T PRK07097 190 GYIATPQTAPLRELQAD-GSRHPFDQFIIA-K--------TPAARWGDPEDLAGPAVFLASDASN-----FVNGHILYVD 254 (265)
T ss_pred ccccccchhhhhhcccc-ccchhHHHHHHh-c--------CCccCCcCHHHHHHHHHHHhCcccC-----CCCCCEEEEC
Confidence 99987643221100000 000011111110 0 0012356789999999998775322 1235666665
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 255 gg 256 (265)
T PRK07097 255 GG 256 (265)
T ss_pred CC
Confidence 54
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-12 Score=124.68 Aligned_cols=203 Identities=11% Similarity=0.108 Sum_probs=132.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+.+++|+||||+|+||+++++.|++.|+ +|+++.|+.. +++.... .++. ....++. |++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~---~Vi~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~D~~----- 68 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA---KVVLASRRVE------RLKELRA----EIEAEGGAAHVVSLDVT----- 68 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCcEEEEEecCC-----
Confidence 5579999999999999999999999865 6888888632 2222111 1111 1223344 777
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cC--------Cce
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KN--------LKM 226 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~--------~~~ 226 (545)
+.+++..+++ .+|+|||+|+.... .+.++..+++|+.++.++++.+... .. ..+
T Consensus 69 -~~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (258)
T PRK06949 69 -DYQSIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGR 147 (258)
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeE
Confidence 4455555544 58999999996421 2456778899999999998877531 01 258
Q ss_pred EEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cC
Q psy16252 227 FTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QF 301 (545)
Q Consensus 227 ~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~ 301 (545)
+|++||..+.... .....|+.+|...|.+++..+ .+
T Consensus 148 iv~~sS~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~~~~~~~ 188 (258)
T PRK06949 148 IINIASVAGLRVL---------------------------------------PQIGLYCMSKAAVVHMTRAMALEWGRHG 188 (258)
T ss_pred EEEECcccccCCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998654321 112679999999999887764 58
Q ss_pred CCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 302 FPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 302 l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
+++++++||.|.++.... .+. ......+ ....+ ...+...+|+++++..++...
T Consensus 189 i~v~~v~pG~v~t~~~~~-------~~~-~~~~~~~-~~~~~--------~~~~~~p~~~~~~~~~l~~~~ 242 (258)
T PRK06949 189 INVNAICPGYIDTEINHH-------HWE-TEQGQKL-VSMLP--------RKRVGKPEDLDGLLLLLAADE 242 (258)
T ss_pred eEEEEEeeCCCcCCcchh-------ccC-hHHHHHH-HhcCC--------CCCCcCHHHHHHHHHHHhChh
Confidence 999999999998763221 110 1111111 11111 123556799999998887643
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-11 Score=118.12 Aligned_cols=207 Identities=13% Similarity=0.033 Sum_probs=131.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+++||||+|+||++++++|++.|+ +|+++.|+... ..+.+. .....++. |+++ .+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~--~~~~~~-----------~~~~~~~~~D~~~------~~ 59 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ---PVIVSYRTHYP--AIDGLR-----------QAGAQCIQADFST------NA 59 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCchh--HHHHHH-----------HcCCEEEEcCCCC------HH
Confidence 47999999999999999999999875 67888886532 111111 11223333 8774 33
Q ss_pred HHHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cC--CceEEEEeccccc
Q psy16252 176 DKRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KN--LKMFTYVSTAFSN 236 (545)
Q Consensus 176 ~~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~--~~~~v~vSS~~v~ 236 (545)
++..++ ..+|++||+||... ..+.++..+++|+.++..+.+.+... .+ ..++|++||....
T Consensus 60 ~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~ 139 (236)
T PRK06483 60 GIMAFIDELKQHTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVE 139 (236)
T ss_pred HHHHHHHHHHhhCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhc
Confidence 443332 35899999998642 13556788999999998887766542 12 3579999987543
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEcccee
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIV 312 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i 312 (545)
... .....|+.||+..|.+++.++ +++++..++||.+
T Consensus 140 ~~~---------------------------------------~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~ 180 (236)
T PRK06483 140 KGS---------------------------------------DKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALI 180 (236)
T ss_pred cCC---------------------------------------CCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCce
Confidence 211 111579999999999998775 5699999999988
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
..... + ............ + .--+...+|+|+++..++..... .+.++.+.++
T Consensus 181 ~~~~~-------~----~~~~~~~~~~~~-~--------~~~~~~~~~va~~~~~l~~~~~~-------~G~~i~vdgg 232 (236)
T PRK06483 181 LFNEG-------D----DAAYRQKALAKS-L--------LKIEPGEEEIIDLVDYLLTSCYV-------TGRSLPVDGG 232 (236)
T ss_pred ecCCC-------C----CHHHHHHHhccC-c--------cccCCCHHHHHHHHHHHhcCCCc-------CCcEEEeCcc
Confidence 43210 0 011111111111 0 01134579999999888753322 4677776654
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.9e-12 Score=121.35 Aligned_cols=166 Identities=11% Similarity=0.103 Sum_probs=113.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|.||++++++|++.|+ +|++..|+.. ++......+-. ....+..++. |++ +
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~---~V~~~~r~~~------~~~~~~~~~~~-~~~~~~~~~~~Dv~------~ 69 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA---DVILLSRNEE------NLKKAREKIKS-ESNVDVSYIVADLT------K 69 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHh-hcCCceEEEEecCC------C
Confidence 4689999999999999999999999875 6777888632 12211111100 0011233344 887 4
Q ss_pred HHHHHHHhc------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccccc
Q psy16252 174 PDDKRLVTS------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~~------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~ 237 (545)
.++++.+++ .+|++||+||.... .+.++..+++|+.++..+++.+... .+..++|++||..+..
T Consensus 70 ~~~i~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~ 149 (263)
T PRK08339 70 REDLERTVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE 149 (263)
T ss_pred HHHHHHHHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC
Confidence 455555544 58999999996431 3567788999999877776655431 2446899999987542
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.+|...+.+.+..+ .|+++..+.||.|
T Consensus 150 ~~---------------------------------------~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v 190 (263)
T PRK08339 150 PI---------------------------------------PNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGII 190 (263)
T ss_pred CC---------------------------------------CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcC
Confidence 21 111569999999888887765 6899999999998
Q ss_pred ecc
Q psy16252 313 IST 315 (545)
Q Consensus 313 ~g~ 315 (545)
-.+
T Consensus 191 ~T~ 193 (263)
T PRK08339 191 RTD 193 (263)
T ss_pred ccH
Confidence 554
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.8e-12 Score=123.26 Aligned_cols=207 Identities=11% Similarity=0.029 Sum_probs=134.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl 172 (545)
+++++|+||||+|.||.++++.|.+.|. +|+++.|+.. +++.... .+.. .....+. |++
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~l~~~~~----~l~~~~~~~~~~~Dv~------ 67 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA---KLALVDLEEA------ELAALAA----ELGGDDRVLTVVADVT------ 67 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HhcCCCcEEEEEecCC------
Confidence 4689999999999999999999999875 6888888632 2222111 1111 0111122 777
Q ss_pred CHHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccc
Q psy16252 173 SPDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSN 236 (545)
Q Consensus 173 ~~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~ 236 (545)
+.+++..++ ..+|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||..+.
T Consensus 68 d~~~v~~~~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~ 147 (296)
T PRK05872 68 DLAAMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAF 147 (296)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhc
Confidence 445554443 368999999997532 2456788999999999999887642 123589999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..+.+.+... .++.++++.||.
T Consensus 148 ~~~~---------------------------------------~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~ 188 (296)
T PRK05872 148 AAAP---------------------------------------GMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSW 188 (296)
T ss_pred CCCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCc
Confidence 3311 11579999999999987664 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
|..+...... ........... ..+ .....+++.+|+|++++.++....
T Consensus 189 v~T~~~~~~~-------~~~~~~~~~~~-~~~------~p~~~~~~~~~va~~i~~~~~~~~ 236 (296)
T PRK05872 189 IDTDLVRDAD-------ADLPAFRELRA-RLP------WPLRRTTSVEKCAAAFVDGIERRA 236 (296)
T ss_pred ccchhhhhcc-------ccchhHHHHHh-hCC------CcccCCCCHHHHHHHHHHHHhcCC
Confidence 8664321110 00011111111 110 011246789999999999876543
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=125.66 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=111.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||+++++.|++.|+ +|+++.|....... ....++. |++ +
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~---~v~~~~~~~~~~~~-----------------~~~~~~~~D~~------~ 60 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGA---NVVNADIHGGDGQH-----------------ENYQFVPTDVS------S 60 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCcccccc-----------------CceEEEEccCC------C
Confidence 4579999999999999999999999875 67777776543210 0122222 777 4
Q ss_pred HHHHHHHhc-------CccEEEEcccccc----------------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceE
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR----------------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMF 227 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~----------------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~ 227 (545)
.++++.+++ .+|+|||+||... ..+.++..+++|+.++..+++++... .+..++
T Consensus 61 ~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~i 140 (266)
T PRK06171 61 AEEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVI 140 (266)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEE
Confidence 555555443 5799999999632 12446778899999999999888752 133579
Q ss_pred EEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCC
Q psy16252 228 TYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFF 302 (545)
Q Consensus 228 v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l 302 (545)
|++||..+.... .....|+.||...+.+++..+ .++
T Consensus 141 v~isS~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~l~~~la~e~~~~gi 181 (266)
T PRK06171 141 VNMSSEAGLEGS---------------------------------------EGQSCYAATKAALNSFTRSWAKELGKHNI 181 (266)
T ss_pred EEEccccccCCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhhhcCe
Confidence 999998654321 011579999999999987765 589
Q ss_pred CEEEEccceee
Q psy16252 303 PVCIFRPSIVI 313 (545)
Q Consensus 303 ~~~i~Rp~~i~ 313 (545)
++.+++||.+-
T Consensus 182 ~v~~v~pG~~~ 192 (266)
T PRK06171 182 RVVGVAPGILE 192 (266)
T ss_pred EEEEEeccccc
Confidence 99999999884
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.6e-12 Score=122.09 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=109.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCCCCH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lgl~~ 174 (545)
|+++||||+|+||.++++.|++.|. +|+++.|+.. ++..... .+... ...++. |++ ++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~Dl~------~~ 61 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF---AVAVADLNEE------TAKETAK----EINQAGGKAVAYKLDVS------DK 61 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCeEEEEEcCCC------CH
Confidence 5799999999999999999999865 6788877632 2221111 11111 223333 887 45
Q ss_pred HHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEeccccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTAFSN 236 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~~v~ 236 (545)
+.+.++++ .+|+|||+|+.... .+.++..+++|+.++..+++++.. .+...++|++||....
T Consensus 62 ~~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~ 141 (254)
T TIGR02415 62 DQVFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGH 141 (254)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhc
Confidence 55555443 57999999987421 245677889999999888776653 2123689999997654
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.+|+..|.+++... .++++.+++||.
T Consensus 142 ~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~ 182 (254)
T TIGR02415 142 EGNP---------------------------------------ILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGI 182 (254)
T ss_pred CCCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCc
Confidence 2210 11679999999999987654 479999999998
Q ss_pred eecc
Q psy16252 312 VIST 315 (545)
Q Consensus 312 i~g~ 315 (545)
+..+
T Consensus 183 i~t~ 186 (254)
T TIGR02415 183 VKTP 186 (254)
T ss_pred ccCh
Confidence 8554
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-12 Score=123.61 Aligned_cols=216 Identities=13% Similarity=0.062 Sum_probs=128.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl~ 173 (545)
.|+|+||||+|+||..+++.|++.|+ +|+++.+... +...... ..++. .+..++. |++ +
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~---~v~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~~Dl~------~ 63 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW---SVGINYARDA-----AAAEETA----DAVRAAGGRACVVAGDVA------N 63 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeCCCH-----HHHHHHH----HHHHhcCCcEEEEEeccC------C
Confidence 37899999999999999999999875 4555443321 1111111 11111 1223333 777 3
Q ss_pred HHHHHHHh-------cCccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHH-cc--C---CceEEEEec
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQ-CK--N---LKMFTYVST 232 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~-~~--~---~~~~v~vSS 232 (545)
.+++..++ ..+|+|||+||.... .+.++..+++|+.++..+++.+.. .. + -.+||++||
T Consensus 64 ~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS 143 (248)
T PRK06947 64 EADVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSS 143 (248)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 44444433 368999999996421 234566789999999988765443 21 1 135999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
.+...... .....|+.||+..+.+++.++ .+++++++
T Consensus 144 ~~~~~~~~--------------------------------------~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i 185 (248)
T PRK06947 144 IASRLGSP--------------------------------------NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAV 185 (248)
T ss_pred hhhcCCCC--------------------------------------CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEE
Confidence 76532110 001469999999998887665 47999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
|||.|..+.... . . .+ ....... ... + .--...++|++++++.++..... ...+..+.
T Consensus 186 ~Pg~v~t~~~~~----~-~--~~-~~~~~~~-~~~------~--~~~~~~~e~va~~~~~l~~~~~~-----~~~G~~~~ 243 (248)
T PRK06947 186 RPGLIETEIHAS----G-G--QP-GRAARLG-AQT------P--LGRAGEADEVAETIVWLLSDAAS-----YVTGALLD 243 (248)
T ss_pred eccCcccccccc----c-C--CH-HHHHHHh-hcC------C--CCCCcCHHHHHHHHHHHcCcccc-----CcCCceEe
Confidence 999997652110 0 0 01 1111111 110 0 01136789999999988765432 12355665
Q ss_pred eec
Q psy16252 388 YVN 390 (545)
Q Consensus 388 i~~ 390 (545)
+.+
T Consensus 244 ~~g 246 (248)
T PRK06947 244 VGG 246 (248)
T ss_pred eCC
Confidence 543
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-12 Score=126.55 Aligned_cols=179 Identities=14% Similarity=0.107 Sum_probs=115.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||||+||.+++++|++.|. +|++..|+.. +.++....+-.......+.++. |++ +
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~---~Vil~~R~~~------~~~~~~~~l~~~~~~~~v~~~~~Dl~------d 76 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA---EVILPVRNRA------KGEAAVAAIRTAVPDAKLSLRALDLS------S 76 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHHhCCCCceEEEEecCC------C
Confidence 5689999999999999999999999865 6888888642 1222111111111111233444 887 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccC
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~ 238 (545)
.+++..+++ .+|++||+||.... .+.++..+++|+.|+..+.+.+... .+..++|++||......
T Consensus 77 ~~sv~~~~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~ 156 (313)
T PRK05854 77 LASVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRG 156 (313)
T ss_pred HHHHHHHHHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCC
Confidence 555554443 58999999997532 1456778899999988887776531 12358999999865432
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEEccce
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIFRPSI 311 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~Rp~~ 311 (545)
....+. ++.+ ........|+.||...+.+.++++ .++.+..+.||.
T Consensus 157 ~~~~~~-------------------~~~~--------~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~ 209 (313)
T PRK05854 157 AINWDD-------------------LNWE--------RSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGV 209 (313)
T ss_pred CcCccc-------------------cccc--------ccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecce
Confidence 110000 0000 000111579999999998887663 368999999999
Q ss_pred eecc
Q psy16252 312 VIST 315 (545)
Q Consensus 312 i~g~ 315 (545)
|-..
T Consensus 210 v~T~ 213 (313)
T PRK05854 210 APTN 213 (313)
T ss_pred eccC
Confidence 8664
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-12 Score=125.06 Aligned_cols=173 Identities=17% Similarity=0.133 Sum_probs=112.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.|+.++||||||+||++++++|+++|. +|+++.|+.. ++++....+-..........+. |+++ +..-..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~---~Vil~~R~~~------~l~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~ 121 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL---NLVLVARNPD------KLKDVSDSIQSKYSKTQIKTVVVDFSG-DIDEGV 121 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC---CEEEEECCHH------HHHHHHHHHHHHCCCcEEEEEEEECCC-CcHHHH
Confidence 379999999999999999999999875 5788888642 2332221111100001122223 7763 110011
Q ss_pred HHHHHHhc--CccEEEEcccccc-----c----hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCC
Q psy16252 175 DDKRLVTS--KVNLVFHCAATLR-----F----DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 175 ~~~~~l~~--~vd~Vih~Aa~~~-----~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~ 240 (545)
+.+.+.+. ++|++|||||... + .+.++..+++|+.|+..+.+++... .+..++|++||..+.....
T Consensus 122 ~~l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~ 201 (320)
T PLN02780 122 KRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPS 201 (320)
T ss_pred HHHHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCC
Confidence 22333333 3569999999642 1 2345678899999999998887541 2456899999987642100
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
. +....|+.||+..+.+.+..+ .|++++++.||.|-.+
T Consensus 202 --------~-----------------------------p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~ 244 (320)
T PLN02780 202 --------D-----------------------------PLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATK 244 (320)
T ss_pred --------C-----------------------------ccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecC
Confidence 0 112679999999998887765 5899999999998553
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-12 Score=121.47 Aligned_cols=195 Identities=16% Similarity=0.147 Sum_probs=126.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh---cCCCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF---TCSTSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~---~~~~~~~-Dl~~~~l 170 (545)
+++++|+||||+|+||++++++|++.|+ +|+++.|+.. ++.... +.+.. ....++. |+++.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~---~V~~~~r~~~------~~~~~~----~~l~~~~~~~~~~~~~D~~~~-- 68 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA---TVILVARHQK------KLEKVY----DAIVEAGHPEPFAIRFDLMSA-- 68 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCChH------HHHHHH----HHHHHcCCCCcceEEeeeccc--
Confidence 4579999999999999999999999865 6888888753 122111 11111 1122233 66532
Q ss_pred CCCHHHHHHH-------h-cCccEEEEcccccc----c----hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEe
Q psy16252 171 GLSPDDKRLV-------T-SKVNLVFHCAATLR----F----DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVS 231 (545)
Q Consensus 171 gl~~~~~~~l-------~-~~vd~Vih~Aa~~~----~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vS 231 (545)
+.+++..+ + ..+|+|||+||... + .+.+...+++|+.|+.++++.+... .+..+++++|
T Consensus 69 --~~~~~~~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~s 146 (239)
T PRK08703 69 --EEKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVG 146 (239)
T ss_pred --chHHHHHHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 12223222 2 46899999999631 1 2445667899999999988877542 1346899999
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc------cCCCEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA------QFFPVC 305 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~------~~l~~~ 305 (545)
|....... .....|+.||+..|.+++.++ .+++++
T Consensus 147 s~~~~~~~---------------------------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~ 187 (239)
T PRK08703 147 ESHGETPK---------------------------------------AYWGGFGASKAALNYLCKVAADEWERFGNLRAN 187 (239)
T ss_pred ccccccCC---------------------------------------CCccchHHhHHHHHHHHHHHHHHhccCCCeEEE
Confidence 86543211 111579999999999987765 269999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccc
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 371 (545)
+++||.|.++..... .+ +.....+...+|++.+++..+..
T Consensus 188 ~v~pG~v~t~~~~~~------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 188 VLVPGPINSPQRIKS------------------------HP--GEAKSERKSYGDVLPAFVWWASA 227 (239)
T ss_pred EEecCcccCcccccc------------------------CC--CCCccccCCHHHHHHHHHHHhCc
Confidence 999999988632100 00 01111346888999888887763
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-11 Score=118.11 Aligned_cols=222 Identities=12% Similarity=0.045 Sum_probs=132.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||++++++|++.|. +|++..|+.. +++......+- ........++. |++ +
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~D~~------~ 70 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGV---NIAFTYNSNV-----EEANKIAEDLE-QKYGIKAKAYPLNIL------E 70 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCH-----HHHHHHHHHHH-HhcCCceEEEEcCCC------C
Confidence 5689999999999999999999999875 5666555421 12222111110 00011223344 887 4
Q ss_pred HHHHHHHhc-------CccEEEEcccccc---------c----hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEE
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR---------F----DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYV 230 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~---------~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~v 230 (545)
.++++.+++ .+|++|||||... + .+.+...+++|+.+...+.+.+... .+-.++|++
T Consensus 71 ~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~i 150 (260)
T PRK08416 71 PETYKELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISL 150 (260)
T ss_pred HHHHHHHHHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEE
Confidence 445544443 5899999997531 1 2345667888988877766655431 134689999
Q ss_pred eccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 231 STAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 231 SS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
||....... +....|+.||+..+.+++.++ .++++.
T Consensus 151 sS~~~~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~ 191 (260)
T PRK08416 151 SSTGNLVYI---------------------------------------ENYAGHGTSKAAVETMVKYAATELGEKNIRVN 191 (260)
T ss_pred eccccccCC---------------------------------------CCcccchhhHHHHHHHHHHHHHHhhhhCeEEE
Confidence 997543211 111579999999999998775 589999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
.+.||.|-.+.....+ ............. + .-.+..++|+|++++.++..... ...+..
T Consensus 192 ~v~PG~i~T~~~~~~~-------~~~~~~~~~~~~~-------~--~~r~~~p~~va~~~~~l~~~~~~-----~~~G~~ 250 (260)
T PRK08416 192 AVSGGPIDTDALKAFT-------NYEEVKAKTEELS-------P--LNRMGQPEDLAGACLFLCSEKAS-----WLTGQT 250 (260)
T ss_pred EEeeCcccChhhhhcc-------CCHHHHHHHHhcC-------C--CCCCCCHHHHHHHHHHHcChhhh-----cccCcE
Confidence 9999988544211111 0011111111110 0 12356789999999998764322 123566
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
+.+.++
T Consensus 251 i~vdgg 256 (260)
T PRK08416 251 IVVDGG 256 (260)
T ss_pred EEEcCC
Confidence 666543
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=122.56 Aligned_cols=204 Identities=13% Similarity=0.080 Sum_probs=130.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|+++||||+|+||++++++|++.|. +|+++.|... .+....+ . .. ......+. |++ +
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~---~vv~~~~~~~----~~~~~~~-~----~~-~~~~~~~~~Dl~------~ 68 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGC---DIVGINIVEP----TETIEQV-T----AL-GRRFLSLTADLR------K 68 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEecCcch----HHHHHHH-H----hc-CCeEEEEECCCC------C
Confidence 4579999999999999999999999875 5666555321 1111111 0 00 01122233 777 4
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v 235 (545)
.+++..+++ ++|++|||||.... .+.++..+++|+.++.++++++... +.-.++|++||..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~ 148 (253)
T PRK08993 69 IDGIPALLERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLS 148 (253)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhh
Confidence 555555543 68999999997532 2567888999999999999887542 11257999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... ....|+.||...|.+.+..+ .++++..++||
T Consensus 149 ~~~~~---------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG 189 (253)
T PRK08993 149 FQGGI---------------------------------------RVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPG 189 (253)
T ss_pred ccCCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeC
Confidence 53211 11479999999998887765 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.+-.+..... ............ . .+ ..-+...+|+|++++.++...
T Consensus 190 ~v~T~~~~~~-------~~~~~~~~~~~~-~---~p-----~~r~~~p~eva~~~~~l~s~~ 235 (253)
T PRK08993 190 YMATNNTQQL-------RADEQRSAEILD-R---IP-----AGRWGLPSDLMGPVVFLASSA 235 (253)
T ss_pred cccCcchhhh-------ccchHHHHHHHh-c---CC-----CCCCcCHHHHHHHHHHHhCcc
Confidence 9966422110 000011111111 1 11 112667899999999887654
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=123.54 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=108.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
++|+||||||+||++++++|++.|+ +|+++.|+.... +... ...+..++. |++ +.++
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~---~v~~~~r~~~~~-----~~~~--------~~~~~~~~~~D~~------~~~~ 59 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGI---AVLGVARSRHPS-----LAAA--------AGERLAEVELDLS------DAAA 59 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCC---EEEEEecCcchh-----hhhc--------cCCeEEEEEeccC------CHHH
Confidence 5899999999999999999999875 678888875321 1000 001222333 777 3444
Q ss_pred HHHHh-----------cCccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 177 KRLVT-----------SKVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 177 ~~~l~-----------~~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+..++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+..++|++||..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~ 139 (243)
T PRK07023 60 AAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGA 139 (243)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChh
Confidence 44422 157899999997532 2445778899999977776665532 2456899999986
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPS 310 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~ 310 (545)
+..... ....|+.+|...|.+++.++ .++++.+++||
T Consensus 140 ~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg 180 (243)
T PRK07023 140 ARNAYA---------------------------------------GWSVYCATKAALDHHARAVALDANRALRIVSLAPG 180 (243)
T ss_pred hcCCCC---------------------------------------CchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 543211 11579999999999998765 58999999999
Q ss_pred eeecc
Q psy16252 311 IVIST 315 (545)
Q Consensus 311 ~i~g~ 315 (545)
.+-.+
T Consensus 181 ~~~t~ 185 (243)
T PRK07023 181 VVDTG 185 (243)
T ss_pred ccccH
Confidence 87543
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-12 Score=123.47 Aligned_cols=203 Identities=13% Similarity=0.080 Sum_probs=131.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|+++||||+|.||++++++|++.|. +|+++.|... +....... .. ..+..++. |++ +
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~---~vv~~~~~~~-----~~~~~~~~----~~-~~~~~~~~~Dl~------~ 66 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA---DIVGVGVAEA-----PETQAQVE----AL-GRKFHFITADLI------Q 66 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCchH-----HHHHHHHH----Hc-CCeEEEEEeCCC------C
Confidence 4579999999999999999999999876 5666666421 11111111 00 01223334 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cC-CceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KN-LKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~-~~~~v~vSS~~v 235 (545)
.+++..+++ .+|++||+||.... .+.++..+++|+.++..+.+.+... .+ -.++|++||...
T Consensus 67 ~~~~~~~~~~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~ 146 (251)
T PRK12481 67 QKDIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLS 146 (251)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhh
Confidence 556655543 58999999997431 3557788999999999988877542 11 358999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
+.... ....|+.||+..+.+++..+ .|+++..++||
T Consensus 147 ~~~~~---------------------------------------~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG 187 (251)
T PRK12481 147 FQGGI---------------------------------------RVPSYTASKSAVMGLTRALATELSQYNINVNAIAPG 187 (251)
T ss_pred cCCCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 53211 11469999999999887664 68999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccc
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 371 (545)
.|-.+..... ............ . .+ .-.+...+|||+++..++..
T Consensus 188 ~v~t~~~~~~-------~~~~~~~~~~~~-~---~p-----~~~~~~peeva~~~~~L~s~ 232 (251)
T PRK12481 188 YMATDNTAAL-------RADTARNEAILE-R---IP-----ASRWGTPDDLAGPAIFLSSS 232 (251)
T ss_pred CCccCchhhc-------ccChHHHHHHHh-c---CC-----CCCCcCHHHHHHHHHHHhCc
Confidence 9865421110 000111111111 1 11 11356789999999988754
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=119.99 Aligned_cols=222 Identities=13% Similarity=0.102 Sum_probs=137.6
Q ss_pred hhhcCcEEEEecccc-ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC
Q psy16252 93 DFYEGAEILMTGATG-FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL 170 (545)
Q Consensus 93 ~~~~~~~VlITGatG-flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l 170 (545)
..+.+++++||||+| .||.++++.|++.|+ .|++..|... ++......+-......+..++. |++
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~---~V~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Dl~---- 79 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGA---RVVISDIHER------RLGETADELAAELGLGRVEAVVCDVT---- 79 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCC---EEEEEeCCHH------HHHHHHHHHHHhcCCceEEEEEccCC----
Confidence 345689999999998 699999999999876 4777776532 1221111110001111223333 877
Q ss_pred CCCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cC-CceEEEEec
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KN-LKMFTYVST 232 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~-~~~~v~vSS 232 (545)
+.+++..+++ .+|+||||||.... .+.+...+++|+.++..+++.+... .+ -.+++++||
T Consensus 80 --~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss 157 (262)
T PRK07831 80 --SEAQVDALIDAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNAS 157 (262)
T ss_pred --CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence 4455554443 67999999996421 2456778899999999988876541 12 357888888
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
....... .....|+.||+..+.+++.++ .++++.++
T Consensus 158 ~~~~~~~---------------------------------------~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i 198 (262)
T PRK07831 158 VLGWRAQ---------------------------------------HGQAHYAAAKAGVMALTRCSALEAAEYGVRINAV 198 (262)
T ss_pred hhhcCCC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEE
Confidence 7543211 111579999999999988765 58999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
+||.+..+.... .. ............ ...-+...+|+|++++.++..... ...+.++.
T Consensus 199 ~Pg~~~t~~~~~-------~~-~~~~~~~~~~~~---------~~~r~~~p~~va~~~~~l~s~~~~-----~itG~~i~ 256 (262)
T PRK07831 199 APSIAMHPFLAK-------VT-SAELLDELAARE---------AFGRAAEPWEVANVIAFLASDYSS-----YLTGEVVS 256 (262)
T ss_pred eeCCccCccccc-------cc-CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhc-----CcCCceEE
Confidence 999987753210 00 112222221111 112356779999999988765432 12356665
Q ss_pred eec
Q psy16252 388 YVN 390 (545)
Q Consensus 388 i~~ 390 (545)
+.+
T Consensus 257 v~~ 259 (262)
T PRK07831 257 VSS 259 (262)
T ss_pred eCC
Confidence 544
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-12 Score=119.58 Aligned_cols=210 Identities=12% Similarity=0.087 Sum_probs=132.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl~ 173 (545)
++++|+||||+|+||.++++.|++.|+ +|+++.|+.. ++..... .+.. ....++. |+. +
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~Dl~------~ 64 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA---QVCINSRNEN------KLKRMKK----TLSKYGNIHYVVGDVS------S 64 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCeEEEECCCC------C
Confidence 478999999999999999999999875 6888888642 1111111 1111 1223333 777 3
Q ss_pred HHHHHHHh-------cCccEEEEccccccc-----hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCC
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF-----DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~-----~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~ 240 (545)
.+.+..++ ..+|.+||+++.... .+.++..+++|+.++..+++.+... ..-.+||++||........
T Consensus 65 ~~~~~~~~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~ 144 (238)
T PRK05786 65 TESARNVIEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKAS 144 (238)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccCC
Confidence 44444433 357999999985321 1345667899999998888877653 1225799999875421100
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
.....|+.||+..+.+++.+. .+++++++|||.++++
T Consensus 145 --------------------------------------~~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~ 186 (238)
T PRK05786 145 --------------------------------------PDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGD 186 (238)
T ss_pred --------------------------------------CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCC
Confidence 011569999998888776654 5899999999999875
Q ss_pred CCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
... ..... . .. .....+++.+|++++++.++..... ...+..+.+.+
T Consensus 187 ~~~------------~~~~~----~-~~------~~~~~~~~~~~va~~~~~~~~~~~~-----~~~g~~~~~~~ 233 (238)
T PRK05786 187 FEP------------ERNWK----K-LR------KLGDDMAPPEDFAKVIIWLLTDEAD-----WVDGVVIPVDG 233 (238)
T ss_pred CCc------------hhhhh----h-hc------cccCCCCCHHHHHHHHHHHhccccc-----CccCCEEEECC
Confidence 210 00000 0 00 0112367889999999998865332 12356666544
|
|
| >KOG4039|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=112.20 Aligned_cols=201 Identities=18% Similarity=0.203 Sum_probs=140.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++++.+||.||||-.|+.|++.++.+ +...+|+++.|.+....+.... + .... |.. .
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~-~~FSKV~~i~RR~~~d~at~k~----------v-----~q~~vDf~------K 73 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEA-PQFSKVYAILRRELPDPATDKV----------V-----AQVEVDFS------K 73 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhc-ccceeEEEEEeccCCCccccce----------e-----eeEEechH------H
Confidence 45689999999999999999999998 4688999999985433221100 0 0000 333 1
Q ss_pred HHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCH
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHY 253 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~ 253 (545)
-+++....+++|+.|-|-|+.+.....+.++++.-+-...++++|++. ++++|+.+||.++.....
T Consensus 74 l~~~a~~~qg~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~-Gck~fvLvSS~GAd~sSr------------- 139 (238)
T KOG4039|consen 74 LSQLATNEQGPDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEK-GCKTFVLVSSAGADPSSR------------- 139 (238)
T ss_pred HHHHHhhhcCCceEEEeecccccccccCceEeechHHHHHHHHHHHhC-CCeEEEEEeccCCCcccc-------------
Confidence 244555567999999999998766666777888888888999999985 999999999998765432
Q ss_pred HHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCC-CccCccchHH
Q psy16252 254 SELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPG-WIDNLYGPTG 332 (545)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g-~~~~~~~~~~ 332 (545)
-.|-+.|-..|+-+.+.. --.++|+|||.+.|.+.+..+| |..+..
T Consensus 140 ----------------------------FlY~k~KGEvE~~v~eL~-F~~~~i~RPG~ll~~R~esr~geflg~~~---- 186 (238)
T KOG4039|consen 140 ----------------------------FLYMKMKGEVERDVIELD-FKHIIILRPGPLLGERTESRQGEFLGNLT---- 186 (238)
T ss_pred ----------------------------eeeeeccchhhhhhhhcc-ccEEEEecCcceecccccccccchhhhee----
Confidence 368899999999988864 2257999999999988766543 433322
Q ss_pred HHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 333 LVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 333 ~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
.+.+ ++.-++.--.||--++.+++..+..+..
T Consensus 187 ------~a~l----~~~~~R~~s~pv~~~~~amvn~~~~~~~ 218 (238)
T KOG4039|consen 187 ------AALL----RSRFQRLLSYPVYGDEVAMVNVLNTSGK 218 (238)
T ss_pred ------hhhh----hhHHHhccCCchhhhhHhHhhccccCCc
Confidence 1111 1222333446666677888876555443
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.3e-12 Score=138.42 Aligned_cols=192 Identities=12% Similarity=0.143 Sum_probs=132.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||||+||++++++|++.|+ +|+++.|+.. .+.+... .+.. ....++. |++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~Dv~----- 430 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGA---TVFLVARNGE------ALDELVA----EIRAKGGTAHAYTCDLT----- 430 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHH----HHHhcCCcEEEEEecCC-----
Confidence 5689999999999999999999999875 6888888642 2222111 1111 1223334 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc---c------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEec
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR---F------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~---~------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS 232 (545)
+.++++.+++ .+|+||||||... . .+.++..+++|+.|+.++++.+... .+..++|++||
T Consensus 431 -~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS 509 (657)
T PRK07201 431 -DSAAVDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSS 509 (657)
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 5556665554 6899999999641 1 2456778899999998887776431 24578999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
.+++.... ....|+.||+..+.+.+.++ .+++++++
T Consensus 510 ~~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v 550 (657)
T PRK07201 510 IGVQTNAP---------------------------------------RFSAYVASKAALDAFSDVAASETLSDGITFTTI 550 (657)
T ss_pred hhhcCCCC---------------------------------------CcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEE
Confidence 87764321 11579999999999987764 68999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccc
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 371 (545)
+||.|..+...+. .. .....+++.+++|+.++.++..
T Consensus 551 ~pg~v~T~~~~~~-------------------~~--------~~~~~~~~~~~~a~~i~~~~~~ 587 (657)
T PRK07201 551 HMPLVRTPMIAPT-------------------KR--------YNNVPTISPEEAADMVVRAIVE 587 (657)
T ss_pred ECCcCcccccCcc-------------------cc--------ccCCCCCCHHHHHHHHHHHHHh
Confidence 9999866422110 00 0012357899999999987654
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=132.09 Aligned_cols=219 Identities=11% Similarity=0.068 Sum_probs=141.5
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
...+|+++||||+|.||.+++++|++.|. +|+++.|+.. +++.... .+. .....+. |++
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~-~~~~~~~~D~~------ 325 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGD---RLLIIDRDAE------GAKKLAE----ALG-DEHLSVQADIT------ 325 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HhC-CceeEEEccCC------
Confidence 45789999999999999999999999875 6888888632 2221111 010 1112233 887
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSN 236 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~ 236 (545)
+++++..+++ .+|++|||||.... .+.++..+++|+.|+.++++.+... .+-.++|++||.+..
T Consensus 326 ~~~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 405 (520)
T PRK06484 326 DEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASL 405 (520)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhc
Confidence 4455555443 58999999997421 2456778999999999999987763 233589999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+++..+ .+++++.+.||.
T Consensus 406 ~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~ 446 (520)
T PRK06484 406 LAL---------------------------------------PPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGY 446 (520)
T ss_pred CCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCC
Confidence 321 111579999999999988765 579999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.++...... . .. ........+.. + ...+..++|+|++++.++..... ...++++.+.++
T Consensus 447 v~t~~~~~~~---~--~~-~~~~~~~~~~~-~--------~~~~~~~~dia~~~~~l~s~~~~-----~~~G~~i~vdgg 506 (520)
T PRK06484 447 IETPAVLALK---A--SG-RADFDSIRRRI-P--------LGRLGDPEEVAEAIAFLASPAAS-----YVNGATLTVDGG 506 (520)
T ss_pred ccCchhhhhc---c--cc-HHHHHHHHhcC-C--------CCCCcCHHHHHHHHHHHhCcccc-----CccCcEEEECCC
Confidence 8765321100 0 00 00111111110 0 11246789999999988764322 124677777654
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.8e-11 Score=114.26 Aligned_cols=218 Identities=15% Similarity=0.077 Sum_probs=131.0
Q ss_pred hcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCC-----CHHHHHHhhHHHHHHhhhhcC--CCccc-C
Q psy16252 95 YEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ-----SPQQRIDKMLDTVAISLKFTC--STSKE-S 164 (545)
Q Consensus 95 ~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~-----~~~~rl~~~~~~~~~~~~~~~--~~~~~-D 164 (545)
+.+|+|+|||||| .||.+++++|++.|. +|++..|..... .......+. -..++... ..++. |
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~---~vi~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~D 76 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGA---DIFFTYWTAYDKEMPWGVDQDEQIQL----QEELLKNGVKVSSMELD 76 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCC---eEEEEecccccccccccccHHHHHHH----HHHHHhcCCeEEEEEcC
Confidence 4689999999995 799999999999875 566654321110 001111111 11122112 22333 8
Q ss_pred CCCCCCCCCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH-c--cCCceE
Q psy16252 165 AQAPDLGLSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ-C--KNLKMF 227 (545)
Q Consensus 165 l~~~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~-~--~~~~~~ 227 (545)
++ +.+++..+++ .+|+|||+||.... .+.++..+++|+.|...+.+.+.. + .+-.+|
T Consensus 77 ~~------~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~i 150 (256)
T PRK12859 77 LT------QNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRI 150 (256)
T ss_pred CC------CHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEE
Confidence 87 4455554443 47999999997532 234567889999998888654432 1 123589
Q ss_pred EEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCC
Q psy16252 228 TYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFF 302 (545)
Q Consensus 228 v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l 302 (545)
|++||..+.... .....|+.||+..+.+.+..+ .++
T Consensus 151 v~isS~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i 191 (256)
T PRK12859 151 INMTSGQFQGPM---------------------------------------VGELAYAATKGAIDALTSSLAAEVAHLGI 191 (256)
T ss_pred EEEcccccCCCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhhhhCe
Confidence 999998654211 112679999999999987765 579
Q ss_pred CEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCC
Q psy16252 303 PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSC 382 (545)
Q Consensus 303 ~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~ 382 (545)
+++.++||.|-.+... ..+..... .. .+ .-.+...+|+|++++.++..... ...
T Consensus 192 ~v~~v~PG~i~t~~~~------------~~~~~~~~-~~---~~-----~~~~~~~~d~a~~~~~l~s~~~~-----~~~ 245 (256)
T PRK12859 192 TVNAINPGPTDTGWMT------------EEIKQGLL-PM---FP-----FGRIGEPKDAARLIKFLASEEAE-----WIT 245 (256)
T ss_pred EEEEEEEccccCCCCC------------HHHHHHHH-hc---CC-----CCCCcCHHHHHHHHHHHhCcccc-----Ccc
Confidence 9999999988553110 11111111 01 10 12245679999999887755322 123
Q ss_pred CCEEEeec
Q psy16252 383 LPIYNYVN 390 (545)
Q Consensus 383 ~~vy~i~~ 390 (545)
++++.+.+
T Consensus 246 G~~i~~dg 253 (256)
T PRK12859 246 GQIIHSEG 253 (256)
T ss_pred CcEEEeCC
Confidence 55655544
|
|
| >KOG1372|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-12 Score=113.41 Aligned_cols=258 Identities=18% Similarity=0.093 Sum_probs=170.7
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc----CCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE----SAQAPD 169 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~----Dl~~~~ 169 (545)
+-..|..||||-||.=|++|++.|+..|+ +|..++|..++.. ..|++.+..+ -...+..... |++
T Consensus 25 ~r~rkvALITGItGQDGSYLaEfLL~KgY---eVHGiiRRsSsFN-T~RIeHlY~n----P~~h~~~~mkLHYgDmT--- 93 (376)
T KOG1372|consen 25 FRPRKVALITGITGQDGSYLAEFLLSKGY---EVHGIIRRSSSFN-TARIEHLYSN----PHTHNGASMKLHYGDMT--- 93 (376)
T ss_pred cccceEEEEecccCCCchHHHHHHHhCCc---eeeEEEeeccccc-hhhhhhhhcC----chhcccceeEEeecccc---
Confidence 33457899999999999999999999987 5788888766543 4566654332 1111111111 887
Q ss_pred CCCCHHHHHHHhc--CccEEEEcccccc----chHHHHHHHHHhHHHHHHHHHHHHHcc--CCceEEEEeccccccCCC-
Q psy16252 170 LGLSPDDKRLVTS--KVNLVFHCAATLR----FDEELKEAIRTNMCATQTMLDLAKQCK--NLKMFTYVSTAFSNSYRK- 240 (545)
Q Consensus 170 lgl~~~~~~~l~~--~vd~Vih~Aa~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~~--~~~~~v~vSS~~v~~~~~- 240 (545)
|...+.+++. +.+-|+|+||..+ |+-+ +..-++...||.+|+++.+.|. .--+|-..||.--+|...
T Consensus 94 ---Dss~L~k~I~~ikPtEiYnLaAQSHVkvSFdlp-eYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e 169 (376)
T KOG1372|consen 94 ---DSSCLIKLISTIKPTEVYNLAAQSHVKVSFDLP-EYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQE 169 (376)
T ss_pred ---chHHHHHHHhccCchhhhhhhhhcceEEEeecc-cceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccC
Confidence 5566777776 5689999999854 3322 3334778889999999999873 124788899988887644
Q ss_pred -cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCC
Q psy16252 241 -NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 241 -~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~ 317 (545)
+..|..+..|- ++|+.+|..+--++-.+. .++ ...-|+.+. .+
T Consensus 170 ~PQsE~TPFyPR------------------------------SPYa~aKmy~~WivvNyREAYnm---fAcNGILFN-HE 215 (376)
T KOG1372|consen 170 IPQSETTPFYPR------------------------------SPYAAAKMYGYWIVVNYREAYNM---FACNGILFN-HE 215 (376)
T ss_pred CCcccCCCCCCC------------------------------ChhHHhhhhheEEEEEhHHhhcc---eeeccEeec-CC
Confidence 23343322221 789999988765554433 222 112344443 35
Q ss_pred CCCCCCccCccchHHHHHHHhcCcee-EEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcc
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVR-TFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPL 396 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~ 396 (545)
+|..|-.--....+.-+..+..|... ...|+-+..+||-|..|-++|+..++++... .-|-++.+ +..
T Consensus 216 SPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dYVEAMW~mLQ~d~P---------dDfViATg--e~h 284 (376)
T KOG1372|consen 216 SPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAGDYVEAMWLMLQQDSP---------DDFVIATG--EQH 284 (376)
T ss_pred CCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhHHHHHHHHHHHhcCCC---------CceEEecC--Ccc
Confidence 55444211111223333333444443 3457788999999999999999999987764 67889988 889
Q ss_pred cHHHHHHHHHHhhcc
Q psy16252 397 TWGEFITKSLKEGVK 411 (545)
Q Consensus 397 t~~el~~~l~~~~~~ 411 (545)
+.+|+++......|+
T Consensus 285 sVrEF~~~aF~~ig~ 299 (376)
T KOG1372|consen 285 SVREFCNLAFAEIGE 299 (376)
T ss_pred cHHHHHHHHHHhhCc
Confidence 999999988887775
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.3e-12 Score=119.01 Aligned_cols=160 Identities=17% Similarity=0.190 Sum_probs=109.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
++|+||||+|++|++++++|++.|+ +|+++.|+..... .+... ....++. |++ +.++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~---~V~~~~r~~~~~~---~~~~~----------~~~~~~~~D~~------d~~~ 59 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW---QVTATVRGPQQDT---ALQAL----------PGVHIEKLDMN------DPAS 59 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC---EEEEEeCCCcchH---HHHhc----------cccceEEcCCC------CHHH
Confidence 6899999999999999999999875 7888988764321 11110 1122233 776 4445
Q ss_pred HHHHhc-----CccEEEEccccccc---------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccCCC
Q psy16252 177 KRLVTS-----KVNLVFHCAATLRF---------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 177 ~~~l~~-----~vd~Vih~Aa~~~~---------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~~~ 240 (545)
+..+.+ ++|+|||+||.... .+.+...+++|+.++..+++.+... .+...++++||.+......
T Consensus 60 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~ 139 (225)
T PRK08177 60 LDQLLQRLQGQRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELP 139 (225)
T ss_pred HHHHHHHhhcCCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccC
Confidence 544444 58999999987521 2445667889999999998887642 1225788888864332110
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
+ ......|+.+|...|.+++.++ .++++..++||.|-.+
T Consensus 140 ~------------------------------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 140 D------------------------------------GGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred C------------------------------------CCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence 0 0011469999999999998764 5789999999998554
|
|
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=117.41 Aligned_cols=168 Identities=15% Similarity=0.162 Sum_probs=110.6
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+.+.+|+|+|||||..||.+++.+|.+.|. +++.++|... ..+++.+.+.. .+...++.+++ |+++.
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~---~l~lvar~~r---rl~~v~~~l~~---~~~~~~v~~~~~Dvs~~--- 75 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRGA---KLVLVARRAR---RLERVAEELRK---LGSLEKVLVLQLDVSDE--- 75 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCCC---ceEEeehhhh---hHHHHHHHHHH---hCCcCccEEEeCccCCH---
Confidence 446789999999999999999999999964 5666666532 13333221111 11111344444 99843
Q ss_pred CCHHHHH-------HHhcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKR-------LVTSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~-------~l~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
++.. .-+.++|++|||||.... .......+++|+.|+..+.+++... .+-.++|.+||+.
T Consensus 76 ---~~~~~~~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSia 152 (282)
T KOG1205|consen 76 ---ESVKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIA 152 (282)
T ss_pred ---HHHHHHHHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccc
Confidence 4444 334589999999998642 2345668899999988888877642 1336899999997
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCE-E--EEc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPV-C--IFR 308 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~-~--i~R 308 (545)
..-.. +....|..||+..+.+....+ .+... + ++-
T Consensus 153 G~~~~---------------------------------------P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~ 193 (282)
T KOG1205|consen 153 GKMPL---------------------------------------PFRSIYSASKHALEGFFETLRQELIPLGTIIIILVS 193 (282)
T ss_pred cccCC---------------------------------------CcccccchHHHHHHHHHHHHHHHhhccCceEEEEEe
Confidence 65321 111479999999988887665 22221 2 366
Q ss_pred cceeec
Q psy16252 309 PSIVIS 314 (545)
Q Consensus 309 p~~i~g 314 (545)
||.|-.
T Consensus 194 PG~V~T 199 (282)
T KOG1205|consen 194 PGPIET 199 (282)
T ss_pred cCceee
Confidence 776644
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=115.91 Aligned_cols=158 Identities=12% Similarity=0.131 Sum_probs=110.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
++++||||+|+||+++++.|++.|. +|+++.|.... .+++. ....+++. |+++ .+.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~---~v~~~~r~~~~---~~~~~-----------~~~~~~~~~D~~~------~~~ 58 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW---RVIATARDAAA---LAALQ-----------ALGAEALALDVAD------PAS 58 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC---EEEEEECCHHH---HHHHH-----------hccceEEEecCCC------HHH
Confidence 6899999999999999999998865 68888886421 11111 11223344 8874 444
Q ss_pred HHHHh---c--CccEEEEcccccc---------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEecccc-ccCC
Q psy16252 177 KRLVT---S--KVNLVFHCAATLR---------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFS-NSYR 239 (545)
Q Consensus 177 ~~~l~---~--~vd~Vih~Aa~~~---------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v-~~~~ 239 (545)
++.+. . .+|+|||+|+... ..+.++..+++|+.++.++++.+... ..-.+++++||... .+..
T Consensus 59 v~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~ 138 (222)
T PRK06953 59 VAGLAWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA 138 (222)
T ss_pred HHHHHHHhcCCCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc
Confidence 54432 2 5899999999752 23456788999999999999988752 12247899988753 2211
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeecc
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVIST 315 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~ 315 (545)
.. .....|+.+|...+.+++... .+++++.++||.|..+
T Consensus 139 ~~-------------------------------------~~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~ 180 (222)
T PRK06953 139 TG-------------------------------------TTGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTD 180 (222)
T ss_pred cC-------------------------------------CCccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecC
Confidence 00 001359999999999998775 5789999999988654
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.3e-12 Score=122.03 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=112.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||.+++++|++.|+ +|+++.|+.. +++.... .+ ..+..++. |++ +
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~-~~~~~~~~~D~~------~ 63 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA---RVAVLERSAE------KLASLRQ----RF-GDHVLVVEGDVT------S 63 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----Hh-CCcceEEEccCC------C
Confidence 4579999999999999999999999876 5788888642 1211111 01 01223333 777 4
Q ss_pred HHHHHHHh-------cCccEEEEccccccc-------h-H----HHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEec
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF-------D-E----ELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVST 232 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~-------~-~----~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS 232 (545)
.+++..++ ..+|++||+||.... . + .++..+++|+.++..+++.+... ..-.++|++||
T Consensus 64 ~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS 143 (263)
T PRK06200 64 YADNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLS 143 (263)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECC
Confidence 44444443 368999999996421 1 1 25667889999999998887642 12257999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEc
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFR 308 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~R 308 (545)
..++.... ....|+.||+..+.+++..+ +++++..+.
T Consensus 144 ~~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~ 184 (263)
T PRK06200 144 NSSFYPGG---------------------------------------GGPLYTASKHAVVGLVRQLAYELAPKIRVNGVA 184 (263)
T ss_pred hhhcCCCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 87653211 11579999999999998765 569999999
Q ss_pred cceeecc
Q psy16252 309 PSIVIST 315 (545)
Q Consensus 309 p~~i~g~ 315 (545)
||.|..+
T Consensus 185 PG~i~t~ 191 (263)
T PRK06200 185 PGGTVTD 191 (263)
T ss_pred CCccccC
Confidence 9999665
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-12 Score=121.03 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=110.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++++||||||+||.+++++|++.|+ +|+++.|+.. +++.... .. ......+. |+. +
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~l~~----~~-~~~~~~~~~D~~------~ 62 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA---RVAVLDKSAA------GLQELEA----AH-GDAVVGVEGDVR------S 62 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHh----hc-CCceEEEEeccC------C
Confidence 3579999999999999999999999876 6777777632 1211110 00 01122333 776 3
Q ss_pred HHHHHHHh-------cCccEEEEccccccc-------h-----HHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEec
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF-------D-----EELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVST 232 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~-------~-----~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS 232 (545)
.++..+++ ..+|++|||||.... . +.++..+++|+.++.++++++... ..-.++|++||
T Consensus 63 ~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS 142 (262)
T TIGR03325 63 LDDHKEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTIS 142 (262)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEec
Confidence 44444433 368999999986321 1 246678899999999999988652 11247888888
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEc
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFR 308 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~R 308 (545)
....... .....|+.||...+.+++.++ +.+++..+.
T Consensus 143 ~~~~~~~---------------------------------------~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~ 183 (262)
T TIGR03325 143 NAGFYPN---------------------------------------GGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVA 183 (262)
T ss_pred cceecCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEe
Confidence 7543211 111579999999999998775 458899999
Q ss_pred cceeecc
Q psy16252 309 PSIVIST 315 (545)
Q Consensus 309 p~~i~g~ 315 (545)
||.|..+
T Consensus 184 PG~i~t~ 190 (262)
T TIGR03325 184 PGGMSSD 190 (262)
T ss_pred cCCCcCC
Confidence 9998765
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=110.94 Aligned_cols=160 Identities=15% Similarity=0.150 Sum_probs=110.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCC--Cccc-CCCCCCCCCCH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS--TSKE-SAQAPDLGLSP 174 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~--~~~~-Dl~~~~lgl~~ 174 (545)
++++||||+|++|.+++++|+++|. ..|+++.|+.......... ...++.... .++. |+. +.
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~--~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~D~~------~~ 65 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGA--RHLVLLSRSGPDAPGAAEL-------LAELEALGAEVTVVACDVA------DR 65 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhC--CeEEEEeCCCCCCccHHHH-------HHHHHhcCCeEEEEECCCC------CH
Confidence 4789999999999999999998864 3677788865432211110 011111111 2233 776 44
Q ss_pred HHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~ 240 (545)
+.+..+++ .+|.|||+|+.... .+.++..+++|+.++.++++++... +.++++++||..+.-..
T Consensus 66 ~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~ii~~ss~~~~~~~- 143 (180)
T smart00822 66 AALAAALAAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDL-PLDFFVLFSSVAGVLGN- 143 (180)
T ss_pred HHHHHHHHHHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccC-CcceEEEEccHHHhcCC-
Confidence 45555433 47999999996432 1456778899999999999999775 67899999998653211
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEcccee
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIV 312 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i 312 (545)
.....|+.+|...+.+++... .+++++.+.||.+
T Consensus 144 --------------------------------------~~~~~y~~sk~~~~~~~~~~~~~~~~~~~~~~g~~ 178 (180)
T smart00822 144 --------------------------------------PGQANYAAANAFLDALAAHRRARGLPATSINWGAW 178 (180)
T ss_pred --------------------------------------CCchhhHHHHHHHHHHHHHHHhcCCceEEEeeccc
Confidence 011579999999999997665 8899999998865
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-11 Score=116.10 Aligned_cols=219 Identities=13% Similarity=0.085 Sum_probs=134.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCC---CCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKN---QSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAP 168 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~---~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~ 168 (545)
+++|+++||||+|.||.+++++|++.|. +|++..|.... ....+.+..... .++... ...+. |++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~---~vii~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~Dv~-- 74 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA---RVVVNDIGVGLDGSASGGSAAQAVVD----EIVAAGGEAVANGDDIA-- 74 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEeeCCccccccccchhHHHHHHH----HHHhcCCceEEEeCCCC--
Confidence 5689999999999999999999999875 56666665310 001122222111 111111 22333 887
Q ss_pred CCCCCHHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc----cC-----Cc
Q psy16252 169 DLGLSPDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC----KN-----LK 225 (545)
Q Consensus 169 ~lgl~~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~-----~~ 225 (545)
+.+++..++ ..+|++|||||.... .+.++..+++|+.|+..+++++... .. -.
T Consensus 75 ----~~~~v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g 150 (286)
T PRK07791 75 ----DWDGAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDA 150 (286)
T ss_pred ----CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCc
Confidence 444444433 468999999997431 2557788999999999998877531 00 24
Q ss_pred eEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----c
Q psy16252 226 MFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----Q 300 (545)
Q Consensus 226 ~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~ 300 (545)
++|++||....... .....|+.||+..+.+.+..+ .
T Consensus 151 ~Iv~isS~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~el~~~ 191 (286)
T PRK07791 151 RIINTSSGAGLQGS---------------------------------------VGQGNYSAAKAGIAALTLVAAAELGRY 191 (286)
T ss_pred EEEEeCchhhCcCC---------------------------------------CCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 89999997654221 111579999999998887764 6
Q ss_pred CCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCC
Q psy16252 301 FFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDP 380 (545)
Q Consensus 301 ~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~ 380 (545)
++++..+.|| +..+ . . ......... .. +.....+...+|+|++++.++..... .
T Consensus 192 gIrVn~v~Pg-~~T~----~-------~--~~~~~~~~~-~~------~~~~~~~~~pedva~~~~~L~s~~~~-----~ 245 (286)
T PRK07791 192 GVTVNAIAPA-ARTR----M-------T--ETVFAEMMA-KP------EEGEFDAMAPENVSPLVVWLGSAESR-----D 245 (286)
T ss_pred CeEEEEECCC-CCCC----c-------c--hhhHHHHHh-cC------cccccCCCCHHHHHHHHHHHhCchhc-----C
Confidence 8999999998 4221 1 0 001111100 00 11112356789999999988764322 1
Q ss_pred CCCCEEEeecC
Q psy16252 381 SCLPIYNYVNS 391 (545)
Q Consensus 381 ~~~~vy~i~~~ 391 (545)
..+.++.+.++
T Consensus 246 itG~~i~vdgG 256 (286)
T PRK07791 246 VTGKVFEVEGG 256 (286)
T ss_pred CCCcEEEEcCC
Confidence 24667766655
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=118.22 Aligned_cols=167 Identities=13% Similarity=0.096 Sum_probs=110.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++++||||+|+||.++++.|++.|+ +|+++.|+... +......+...........+. |++ +
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~---~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~D~~------~ 70 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA---SVAICGRDEER------LASAEARLREKFPGARLLAARCDVL------D 70 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHHH------HHHHHHHHHhhCCCceEEEEEecCC------C
Confidence 4579999999999999999999999875 68888886421 211111110000001122333 887 4
Q ss_pred HHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+++..++ ..+|++||+||.... .+.+...+++|+.+...+++.+... .+..++|++||....
T Consensus 71 ~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 150 (265)
T PRK07062 71 EADVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLAL 150 (265)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEecccccc
Confidence 45554443 368999999996421 2356777899999877777665431 134689999998654
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.+|+..+.+.+..+ .|++++.++||.
T Consensus 151 ~~~---------------------------------------~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~ 191 (265)
T PRK07062 151 QPE---------------------------------------PHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGL 191 (265)
T ss_pred CCC---------------------------------------CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCc
Confidence 321 011469999998877776543 689999999999
Q ss_pred eecc
Q psy16252 312 VIST 315 (545)
Q Consensus 312 i~g~ 315 (545)
|-.+
T Consensus 192 v~t~ 195 (265)
T PRK07062 192 VESG 195 (265)
T ss_pred cccc
Confidence 8654
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.1e-11 Score=114.92 Aligned_cols=220 Identities=11% Similarity=0.046 Sum_probs=129.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
++++||||+|+||.+++++|++.|. +|+++.|.... .+......+ .........++. |+++++-- .+.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~---~V~~~~~~~~~-----~~~~~~~~l-~~~~~~~~~~~~~Dv~d~~~~--~~~ 70 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGY---RVVLHYHRSAA-----AASTLAAEL-NARRPNSAVTCQADLSNSATL--FSR 70 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCC---eEEEEcCCcHH-----HHHHHHHHH-HhccCCceEEEEccCCCchhh--HHH
Confidence 5799999999999999999999875 57776664321 111111110 000001112233 88854210 011
Q ss_pred HHHH-------hcCccEEEEccccccc--------h----------HHHHHHHHHhHHHHHHHHHHHHHcc---------
Q psy16252 177 KRLV-------TSKVNLVFHCAATLRF--------D----------EELKEAIRTNMCATQTMLDLAKQCK--------- 222 (545)
Q Consensus 177 ~~~l-------~~~vd~Vih~Aa~~~~--------~----------~~~~~~~~~Nv~gt~~ll~~a~~~~--------- 222 (545)
++++ +.++|+||||||.... . ..+...+++|+.++..+++.+...-
T Consensus 71 ~~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~ 150 (267)
T TIGR02685 71 CEAIIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRS 150 (267)
T ss_pred HHHHHHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCC
Confidence 2222 2468999999996421 1 1356778999999999988765321
Q ss_pred CCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---
Q psy16252 223 NLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--- 299 (545)
Q Consensus 223 ~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--- 299 (545)
....++++||....... .....|+.||+..|.+++..+
T Consensus 151 ~~~~iv~~~s~~~~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~ 191 (267)
T TIGR02685 151 TNLSIVNLCDAMTDQPL---------------------------------------LGFTMYTMAKHALEGLTRSAALEL 191 (267)
T ss_pred CCeEEEEehhhhccCCC---------------------------------------cccchhHHHHHHHHHHHHHHHHHH
Confidence 11357777776432110 112679999999999998765
Q ss_pred --cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccC
Q psy16252 300 --QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFH 377 (545)
Q Consensus 300 --~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~ 377 (545)
.|++++.++||.+..+...+ ......... ..+ . ...+...++++++++.++.....
T Consensus 192 ~~~gi~v~~v~PG~~~~~~~~~-----------~~~~~~~~~-~~~---~----~~~~~~~~~va~~~~~l~~~~~~--- 249 (267)
T TIGR02685 192 APLQIRVNGVAPGLSLLPDAMP-----------FEVQEDYRR-KVP---L----GQREASAEQIADVVIFLVSPKAK--- 249 (267)
T ss_pred hhhCeEEEEEecCCccCccccc-----------hhHHHHHHH-hCC---C----CcCCCCHHHHHHHHHHHhCcccC---
Confidence 58999999999886442110 011111111 000 0 01246889999999998765322
Q ss_pred CCCCCCCEEEeecC
Q psy16252 378 KDPSCLPIYNYVNS 391 (545)
Q Consensus 378 ~~~~~~~vy~i~~~ 391 (545)
...+..+.+.++
T Consensus 250 --~~~G~~~~v~gg 261 (267)
T TIGR02685 250 --YITGTCIKVDGG 261 (267)
T ss_pred --CcccceEEECCc
Confidence 123566666554
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=120.16 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=108.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+++||||||+||.++++.|++.|+ .|+++.|+.. .++.....+- ........++. |++ ++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~---~vv~~~r~~~------~~~~~~~~~~-~~~~~~~~~~~~D~~------~~~~ 64 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA---ELFLTDRDAD------GLAQTVADAR-ALGGTVPEHRALDIS------DYDA 64 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHH-hcCCCcceEEEeeCC------CHHH
Confidence 4799999999999999999999865 5777777532 1111111110 00001112223 777 4444
Q ss_pred HHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEeccccccC
Q psy16252 177 KRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 177 ~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~~v~~~ 238 (545)
+..++ .++|+|||+||... ..+.++..+++|+.|+.++++.+.. .+...++|++||......
T Consensus 65 ~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~ 144 (272)
T PRK07832 65 VAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVA 144 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCC
Confidence 44433 35899999998642 1345677889999999999998753 122358999999754321
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. +....|+.||+..+.+.+..+ .++++++++||.+.
T Consensus 145 ~---------------------------------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~ 185 (272)
T PRK07832 145 L---------------------------------------PWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVK 185 (272)
T ss_pred C---------------------------------------CCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccc
Confidence 1 112579999997776665443 68999999999998
Q ss_pred ccC
Q psy16252 314 STW 316 (545)
Q Consensus 314 g~~ 316 (545)
++.
T Consensus 186 t~~ 188 (272)
T PRK07832 186 TPL 188 (272)
T ss_pred Ccc
Confidence 763
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-11 Score=114.63 Aligned_cols=203 Identities=14% Similarity=0.053 Sum_probs=130.7
Q ss_pred hcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+ +.||..++++|++.|. +|++..|+.. ..+.+.+ +.......+. |++
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~---~Vi~~~r~~~---~~~~~~~--------~~~~~~~~~~~Dl~----- 65 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA---TVIYTYQNDR---MKKSLQK--------LVDEEDLLVECDVA----- 65 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCC---EEEEecCchH---HHHHHHh--------hccCceeEEeCCCC-----
Confidence 568999999999 7999999999999875 6777777521 1111111 1111233344 887
Q ss_pred CCHHHHHHHh-------cCccEEEEcccccc-----------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLR-----------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
+.++++.++ ..+|++|||||... ..+.++..+++|+.++..+++.+... .+-.++|++||
T Consensus 66 -~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss 144 (252)
T PRK06079 66 -SDESIERAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTY 144 (252)
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEec
Confidence 444554443 35899999999642 12456778899999999998887652 12257999998
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
....... .....|+.||+..+.+.+..+ .|+++..+
T Consensus 145 ~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i 185 (252)
T PRK06079 145 FGSERAI---------------------------------------PNYNVMGIAKAALESSVRYLARDLGKKGIRVNAI 185 (252)
T ss_pred cCccccC---------------------------------------CcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEE
Confidence 7543211 111579999999999987765 68999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.||.|-.+... . ............. .. + .-.+...+|||++++.++...
T Consensus 186 ~PG~v~T~~~~---~----~~~~~~~~~~~~~-~~---p-----~~r~~~pedva~~~~~l~s~~ 234 (252)
T PRK06079 186 SAGAVKTLAVT---G----IKGHKDLLKESDS-RT---V-----DGVGVTIEEVGNTAAFLLSDL 234 (252)
T ss_pred ecCcccccccc---c----CCChHHHHHHHHh-cC---c-----ccCCCCHHHHHHHHHHHhCcc
Confidence 99998654211 1 1111122221111 11 1 123677899999999887653
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-11 Score=117.76 Aligned_cols=205 Identities=11% Similarity=0.103 Sum_probs=125.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||.++++.|++.|. .|++..|+... ..+.+.. .++.. ...++. |++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~---~vvi~~~~~~~--~~~~~~~-------~l~~~~~~~~~~~~Dl~----- 67 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKA---KVVINYRSDEE--EANDVAE-------EIKKAGGEAIAVKGDVT----- 67 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCCHH--HHHHHHH-------HHHHcCCeEEEEEecCC-----
Confidence 4689999999999999999999999865 56666664321 1111111 11111 122333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~ 233 (545)
+.+++..+++ .+|++||+|+.... .+.++..+++|+.++..+++.+ .+.+.-.++|++||.
T Consensus 68 -~~~~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~ 146 (261)
T PRK08936 68 -VESDVVNLIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSV 146 (261)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Confidence 4455554443 58999999997421 2445677899998887665543 443223689999997
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
...... .....|+.||+..+.+.+..+ .++++++++
T Consensus 147 ~~~~~~---------------------------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~ 187 (261)
T PRK08936 147 HEQIPW---------------------------------------PLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIG 187 (261)
T ss_pred cccCCC---------------------------------------CCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEE
Confidence 543211 111579999977776666553 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
||.|.++.... .+..+. ....... .. ....+...+|+++++..++...
T Consensus 188 pg~v~t~~~~~------~~~~~~-~~~~~~~-~~--------~~~~~~~~~~va~~~~~l~s~~ 235 (261)
T PRK08936 188 PGAINTPINAE------KFADPK-QRADVES-MI--------PMGYIGKPEEIAAVAAWLASSE 235 (261)
T ss_pred ECcCCCCcccc------ccCCHH-HHHHHHh-cC--------CCCCCcCHHHHHHHHHHHcCcc
Confidence 99987653211 011111 1111111 11 1123667899999999887654
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=117.23 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=106.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+||||||+||++++++|+++|+ +|+++.|... +++...... . .....++. |++ +.++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~---~V~~~~r~~~-----~~~~~~~~~----~-~~~~~~~~~D~~------~~~~ 62 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT---HVISISRTEN-----KELTKLAEQ----Y-NSNLTFHSLDLQ------DVHE 62 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC---EEEEEeCCch-----HHHHHHHhc----c-CCceEEEEecCC------CHHH
Confidence 6899999999999999999999875 6888888642 112211110 0 11223344 887 4455
Q ss_pred HHHHhcCc-----------cEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEecc
Q psy16252 177 KRLVTSKV-----------NLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTA 233 (545)
Q Consensus 177 ~~~l~~~v-----------d~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~ 233 (545)
++.+++.+ .++||+||.... .+.+...+++|+.++..+++.+.. .+..++||++||.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 142 (251)
T PRK06924 63 LETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSG 142 (251)
T ss_pred HHHHHHHHHHhcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecch
Confidence 55555422 278999987421 244667788999997777665543 2234689999997
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEE
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCI 306 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i 306 (545)
.+.... .....|+.+|+..|.+++.++ .++++..
T Consensus 143 ~~~~~~---------------------------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~ 183 (251)
T PRK06924 143 AAKNPY---------------------------------------FGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVA 183 (251)
T ss_pred hhcCCC---------------------------------------CCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 653221 111679999999999987664 3688999
Q ss_pred Eccceeecc
Q psy16252 307 FRPSIVIST 315 (545)
Q Consensus 307 ~Rp~~i~g~ 315 (545)
++||.+-.+
T Consensus 184 v~Pg~v~t~ 192 (251)
T PRK06924 184 FSPGVMDTN 192 (251)
T ss_pred ecCCccccH
Confidence 999987553
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=133.52 Aligned_cols=163 Identities=14% Similarity=0.109 Sum_probs=115.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++++++||||||+||++++++|.+.|+ +|+++.|+... .+.+.. .++.. ...++. |++
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~---~v~~~~r~~~~---~~~~~~-------~~~~~~~~~~~~~~Dv~----- 374 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGA---EVVASDIDEAA---AERTAE-------LIRAAGAVAHAYRVDVS----- 374 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHH-------HHHhcCCeEEEEEcCCC-----
Confidence 5678999999999999999999999876 58888886421 111111 11111 223333 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~ 233 (545)
+.+.+.++++ .+|+||||||.... .+.++..+++|+.|+.++++++.. .+.-.++|++||.
T Consensus 375 -~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~ 453 (582)
T PRK05855 375 -DADAMEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASA 453 (582)
T ss_pred -CHHHHHHHHHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence 5555655554 48999999997532 245677889999999999887643 1112589999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
+++.... ....|+.||+..+.+.+..+ .|++++++.
T Consensus 454 ~~~~~~~---------------------------------------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~ 494 (582)
T PRK05855 454 AAYAPSR---------------------------------------SLPAYATSKAAVLMLSECLRAELAAAGIGVTAIC 494 (582)
T ss_pred hhccCCC---------------------------------------CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEE
Confidence 7764321 11679999998888776654 689999999
Q ss_pred cceeecc
Q psy16252 309 PSIVIST 315 (545)
Q Consensus 309 p~~i~g~ 315 (545)
||.|-.+
T Consensus 495 Pg~v~t~ 501 (582)
T PRK05855 495 PGFVDTN 501 (582)
T ss_pred eCCCccc
Confidence 9998554
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-11 Score=112.65 Aligned_cols=194 Identities=16% Similarity=0.220 Sum_probs=123.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+||||||+||++++++|++.++++ .|....|...... ......+++ |+++++ +.+.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~-~v~~~~~~~~~~~----------------~~~~~~~~~~Dls~~~---~~~~ 60 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDA-TVHATYRHHKPDF----------------QHDNVQWHALDVTDEA---EIKQ 60 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCC-EEEEEccCCcccc----------------ccCceEEEEecCCCHH---HHHH
Confidence 579999999999999999999986543 4655556432210 011223344 887432 1122
Q ss_pred HHHHhcCccEEEEccccccc-------------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCC
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-------------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-------------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~ 240 (545)
+.+.+.++|+|||+||.... .+.+...+.+|+.++..+++.+... .+..+++++||........
T Consensus 61 ~~~~~~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~~ 140 (235)
T PRK09009 61 LSEQFTQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISDN 140 (235)
T ss_pred HHHhcCCCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccccccC
Confidence 33334589999999997531 1335567899999998888877652 1235788998753211000
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEEccceee
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIFRPSIVI 313 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~Rp~~i~ 313 (545)
. . .....|+.+|+..+.+.+..+ .++++..+.||.+.
T Consensus 141 ~-----~-------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~ 184 (235)
T PRK09009 141 R-----L-------------------------------GGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTD 184 (235)
T ss_pred C-----C-------------------------------CCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEccccee
Confidence 0 0 001479999999999887765 37888999999886
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
.+.... + ... .....+...+++|++++.++....
T Consensus 185 t~~~~~-------------~----~~~---------~~~~~~~~~~~~a~~~~~l~~~~~ 218 (235)
T PRK09009 185 TALSKP-------------F----QQN---------VPKGKLFTPEYVAQCLLGIIANAT 218 (235)
T ss_pred cCCCcc-------------h----hhc---------cccCCCCCHHHHHHHHHHHHHcCC
Confidence 642110 0 000 011225788999999999887654
|
|
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=110.24 Aligned_cols=195 Identities=13% Similarity=0.152 Sum_probs=130.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc-CCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT-CSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~-Dl~~~~lgl 172 (545)
.+|+.||||||++.||+.++.++++.|. ++.+.+..+.+.. +-.+. ++.. ....+. |++
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~---~~vl~Din~~~~~--etv~~--------~~~~g~~~~y~cdis------ 96 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA---KLVLWDINKQGNE--ETVKE--------IRKIGEAKAYTCDIS------ 96 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC---eEEEEeccccchH--HHHHH--------HHhcCceeEEEecCC------
Confidence 5689999999999999999999999964 5666666654422 21111 1111 122223 888
Q ss_pred CHHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEeccc
Q psy16252 173 SPDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAF 234 (545)
Q Consensus 173 ~~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~ 234 (545)
+.+++..+. .++|++||+||.+.. ++..+..+++|+.|.....++. .+. +-.++|.++|+.
T Consensus 97 ~~eei~~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV~IaS~a 175 (300)
T KOG1201|consen 97 DREEIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIVTIASVA 175 (300)
T ss_pred CHHHHHHHHHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEEEehhhh
Confidence 445554444 378999999998742 3556888999999977665543 332 446899999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--------cCCCEEE
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--------QFFPVCI 306 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--------~~l~~~i 306 (545)
...... .-..|+.||+.+.-+.+... .+++.+.
T Consensus 176 G~~g~~---------------------------------------gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTl 216 (300)
T KOG1201|consen 176 GLFGPA---------------------------------------GLADYCASKFAAVGFHESLSMELRALGKDGIKTTL 216 (300)
T ss_pred cccCCc---------------------------------------cchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEE
Confidence 653321 11579999998855554432 6788999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
+-|+.+-. +++. | ........+.+..+.||+.|+.++.....
T Consensus 217 v~P~~i~T-----------------gmf~----~-----~~~~~~l~P~L~p~~va~~Iv~ai~~n~~ 258 (300)
T KOG1201|consen 217 VCPYFINT-----------------GMFD----G-----ATPFPTLAPLLEPEYVAKRIVEAILTNQA 258 (300)
T ss_pred Eeeeeccc-----------------cccC----C-----CCCCccccCCCCHHHHHHHHHHHHHcCCc
Confidence 99887631 1111 1 11224467789999999999999877654
|
|
| >KOG4288|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=107.68 Aligned_cols=209 Identities=16% Similarity=0.105 Sum_probs=136.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
...++.|+.||.|.++++.-...++ .|..|.|+..... ++.+.. .+.+.. |.- +..-
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~---svgilsen~~k~~----l~sw~~---------~vswh~gnsf------ssn~ 110 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVH---SVGILSENENKQT----LSSWPT---------YVSWHRGNSF------SSNP 110 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhce---eeeEeecccCcch----hhCCCc---------ccchhhcccc------ccCc
Confidence 4468999999999999999998755 6777888754321 111100 111111 221 1112
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHHH
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSEL 256 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~ 256 (545)
+.....++..|+-+++-.. +...+.++|-....+.+++|.+. ++++|+|+|.....-..
T Consensus 111 ~k~~l~g~t~v~e~~ggfg---n~~~m~~ing~ani~a~kaa~~~-gv~~fvyISa~d~~~~~----------------- 169 (283)
T KOG4288|consen 111 NKLKLSGPTFVYEMMGGFG---NIILMDRINGTANINAVKAAAKA-GVPRFVYISAHDFGLPP----------------- 169 (283)
T ss_pred chhhhcCCcccHHHhcCcc---chHHHHHhccHhhHHHHHHHHHc-CCceEEEEEhhhcCCCC-----------------
Confidence 3444567788888776532 33456688888888999999997 99999999987432111
Q ss_pred HHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHHH
Q psy16252 257 LKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTG 336 (545)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~ 336 (545)
--+.+|-.+|..||.-+.... +++-+|+|||.|||.+. +.|-...+......+..
T Consensus 170 ----------------------~i~rGY~~gKR~AE~Ell~~~-~~rgiilRPGFiyg~R~--v~g~~~pL~~vg~pl~~ 224 (283)
T KOG4288|consen 170 ----------------------LIPRGYIEGKREAEAELLKKF-RFRGIILRPGFIYGTRN--VGGIKSPLHTVGEPLEM 224 (283)
T ss_pred ----------------------ccchhhhccchHHHHHHHHhc-CCCceeeccceeecccc--cCcccccHHhhhhhHHH
Confidence 112689999999999998775 47889999999999843 23322222211112222
Q ss_pred HhcCc---eeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 337 AQAGV---VRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 337 ~~~g~---~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
..++. +..++.-+......|+|++||.+.+.++.++.-
T Consensus 225 ~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~f 265 (283)
T KOG4288|consen 225 VLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPDF 265 (283)
T ss_pred HHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCCc
Confidence 22222 223455567788999999999999999888765
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-10 Score=110.12 Aligned_cols=166 Identities=13% Similarity=0.121 Sum_probs=111.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|.||.++++.|++.|. +|+++.|+.. +++.....+-. .......++. |++ +
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~~l~~-~~~~~~~~~~~D~~------~ 68 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC---HLHLVARDAD------ALEALAADLRA-AHGVDVAVHALDLS------S 68 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHH------HHHHHHHHHHh-hcCCceEEEEecCC------C
Confidence 3579999999999999999999999865 6888888642 11111111000 0011223333 777 4
Q ss_pred HHHHHHHh---cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCC
Q psy16252 174 PDDKRLVT---SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 174 ~~~~~~l~---~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~ 240 (545)
.+++..++ ..+|++|||||... ..+.++..+++|+.+...+++.+... .+-.++|++||.......
T Consensus 69 ~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~- 147 (259)
T PRK06125 69 PEAREQLAAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPD- 147 (259)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCC-
Confidence 45555544 46899999999642 12456778899999999988876421 123579999887542110
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
.....|+.+|...+.+.+..+ .+++++.+.||.+-.+
T Consensus 148 --------------------------------------~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~ 189 (259)
T PRK06125 148 --------------------------------------ADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATD 189 (259)
T ss_pred --------------------------------------CCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccH
Confidence 011468999999988887764 5899999999998654
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=125.77 Aligned_cols=162 Identities=16% Similarity=0.175 Sum_probs=112.7
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
..++++++||||+|+||..+++.|.+.|. +|+++.|+... +.+...... + ....+. |++
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga---~vi~~~~~~~~----~~l~~~~~~----~---~~~~~~~Dv~------ 266 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGA---HVVCLDVPAAG----EALAAVANR----V---GGTALALDIT------ 266 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCccH----HHHHHHHHH----c---CCeEEEEeCC------
Confidence 35689999999999999999999999865 67777775321 222221111 1 122333 777
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+.++++.+++ .+|+|||+||... ..+.++..+++|+.|+.++.+++... ..-.+||++||.+.
T Consensus 267 ~~~~~~~~~~~~~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~ 346 (450)
T PRK08261 267 APDAPARIAEHLAERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISG 346 (450)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhh
Confidence 4445544443 5899999999753 23556788999999999999998763 12268999999865
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.+|...+.+++..+ .++++..+.||
T Consensus 347 ~~g~---------------------------------------~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG 387 (450)
T PRK08261 347 IAGN---------------------------------------RGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPG 387 (450)
T ss_pred cCCC---------------------------------------CCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeC
Confidence 4221 011579999997777766553 68999999999
Q ss_pred eeec
Q psy16252 311 IVIS 314 (545)
Q Consensus 311 ~i~g 314 (545)
.|-.
T Consensus 388 ~i~t 391 (450)
T PRK08261 388 FIET 391 (450)
T ss_pred cCcc
Confidence 8743
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-11 Score=112.87 Aligned_cols=152 Identities=11% Similarity=0.095 Sum_probs=107.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+++||||+|.||+++++.|++.|+ +|+++.|+.. ++...... + ....+. |++ +.++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~---~v~~~~r~~~------~~~~~~~~----~---~~~~~~~D~~------~~~~ 58 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH---KVTLVGARRD------DLEVAAKE----L---DVDAIVCDNT------DPAS 58 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHh----c---cCcEEecCCC------CHHH
Confidence 4699999999999999999999865 6777777632 22221111 1 123333 777 4555
Q ss_pred HHHHhc----CccEEEEccccc---------cc---hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCC
Q psy16252 177 KRLVTS----KVNLVFHCAATL---------RF---DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 177 ~~~l~~----~vd~Vih~Aa~~---------~~---~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~ 239 (545)
++.+++ .+|++||+|+.. .+ .+.++..+++|+.++.++++++... ..-.++|++||... .
T Consensus 59 v~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~--~- 135 (223)
T PRK05884 59 LEEARGLFPHHLDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP--P- 135 (223)
T ss_pred HHHHHHHHhhcCcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC--C-
Confidence 655553 689999998741 11 2456788999999999999987652 12258999998641 0
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeec
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIS 314 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g 314 (545)
....|+.||+..+.+.+..+ .++++..+.||.+..
T Consensus 136 ----------------------------------------~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t 175 (223)
T PRK05884 136 ----------------------------------------AGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQ 175 (223)
T ss_pred ----------------------------------------CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCc
Confidence 01579999999998887664 679999999998743
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=119.18 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=75.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||||+||++++++|.+.|. +|+++.|++. ++...... . ......+. |++ +
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~---~Vi~l~r~~~------~l~~~~~~----~-~~~v~~v~~Dvs------d 235 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGA---KVVALTSNSD------KITLEING----E-DLPVKTLHWQVG------Q 235 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHhh----c-CCCeEEEEeeCC------C
Confidence 4689999999999999999999999865 6788877642 11111100 0 00112233 777 5
Q ss_pred HHHHHHHhcCccEEEEccccccc----hHHHHHHHHHhHHHHHHHHHHHHH
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRF----DEELKEAIRTNMCATQTMLDLAKQ 220 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~ 220 (545)
.+++.+.+.++|++||+||.... .+.++..+++|+.|+.++++++..
T Consensus 236 ~~~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp 286 (406)
T PRK07424 236 EAALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFT 286 (406)
T ss_pred HHHHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888899999999986421 245677899999999999998754
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-11 Score=114.54 Aligned_cols=197 Identities=13% Similarity=0.071 Sum_probs=124.7
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCCCCHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+||||||+||.++++.|++.|. +|+++.|.... +..... ..++.. +..++. |++ +.++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~---~v~~~~~~~~~-----~~~~~~----~~l~~~~~~~~~~~~Dl~------~~~~ 62 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF---EICVHYHSGRS-----DAESVV----SAIQAQGGNARLLQFDVA------DRVA 62 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCCHH-----HHHHHH----HHHHHcCCeEEEEEccCC------CHHH
Confidence 68999999999999999999875 57777765321 111111 111111 233344 887 4455
Q ss_pred HHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEeccccccC
Q psy16252 177 KRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 177 ~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v~~~ 238 (545)
+..+++ .+|++||+||... ..+.++..+++|+.++.++++.+. +..+..++|++||......
T Consensus 63 ~~~~~~~~~~~~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~ 142 (239)
T TIGR01831 63 CRTLLEADIAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMG 142 (239)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccC
Confidence 544433 5799999999642 234567789999999999988653 1123468999999764322
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.+|+..+.+.+..+ .+++++.++||.+.
T Consensus 143 ~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~ 183 (239)
T TIGR01831 143 N---------------------------------------RGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLID 183 (239)
T ss_pred C---------------------------------------CCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCc
Confidence 1 011579999998877776654 68999999999986
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
++..... . ........ ..+ ...+...+|++++++.++...
T Consensus 184 t~~~~~~-------~---~~~~~~~~-~~~--------~~~~~~~~~va~~~~~l~~~~ 223 (239)
T TIGR01831 184 TEMLAEV-------E---HDLDEALK-TVP--------MNRMGQPAEVASLAGFLMSDG 223 (239)
T ss_pred cccchhh-------h---HHHHHHHh-cCC--------CCCCCCHHHHHHHHHHHcCch
Confidence 6532110 0 11111111 111 112456799999999987654
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-11 Score=115.70 Aligned_cols=164 Identities=13% Similarity=0.097 Sum_probs=112.3
Q ss_pred hcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+ +.||.++++.|++.|. +|++..|+.. ..++++.... .+.. . ..+. |++
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~---~Vil~~r~~~---~~~~~~~~~~----~~~~-~-~~~~~Dv~----- 65 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA---ELAFTYLNEA---LKKRVEPIAQ----ELGS-D-YVYELDVS----- 65 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEEecCHH---HHHHHHHHHH----hcCC-c-eEEEecCC-----
Confidence 357999999997 7999999999999875 5777777531 1223332211 1111 1 2334 888
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
+.++++.++ ..+|++|||||.... .+.++..+++|+.|+..+.+.+... ..-.++|++||
T Consensus 66 -d~~~v~~~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS 144 (274)
T PRK08415 66 -KPEHFKSLAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSY 144 (274)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEec
Confidence 444554443 368999999996421 2456778999999999998877652 12258999998
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
.+..... .....|+.||+..+.+.+..+ .|+++..+
T Consensus 145 ~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v 185 (274)
T PRK08415 145 LGGVKYV---------------------------------------PHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAI 185 (274)
T ss_pred CCCccCC---------------------------------------CcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEE
Confidence 7543211 111579999999988887765 67999999
Q ss_pred ccceeecc
Q psy16252 308 RPSIVIST 315 (545)
Q Consensus 308 Rp~~i~g~ 315 (545)
.||.|..+
T Consensus 186 ~PG~v~T~ 193 (274)
T PRK08415 186 SAGPIKTL 193 (274)
T ss_pred ecCccccH
Confidence 99988654
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=112.29 Aligned_cols=166 Identities=13% Similarity=0.069 Sum_probs=112.2
Q ss_pred hcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+.+|+++||||+ +.||.+++++|++.|. +|++..|..... +++++... .++......+. |++
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~---~v~~~~r~~~~~---~~~~~~~~----~~~~~~~~~~~~Dv~----- 69 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA---KLVFTYAGERLE---KEVRELAD----TLEGQESLLLPCDVT----- 69 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEecCcccch---HHHHHHHH----HcCCCceEEEecCCC-----
Confidence 457999999997 8999999999999875 577777753221 22322211 11111223334 887
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
+.++++.++ ..+|++|||||.... .+.+...+++|+.++..+++.+... ..-.++|++||
T Consensus 70 -d~~~v~~~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS 148 (257)
T PRK08594 70 -SDEEITACFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTY 148 (257)
T ss_pred -CHHHHHHHHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcc
Confidence 445554443 358999999986421 1345667899999998888777642 12258999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
....... .....|+.||+..+.+.+..+ .++++..+
T Consensus 149 ~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v 189 (257)
T PRK08594 149 LGGERVV---------------------------------------QNYNVMGVAKASLEASVKYLANDLGKDGIRVNAI 189 (257)
T ss_pred cCCccCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeee
Confidence 8653211 111579999999999987765 58999999
Q ss_pred ccceeecc
Q psy16252 308 RPSIVIST 315 (545)
Q Consensus 308 Rp~~i~g~ 315 (545)
.||.|-.+
T Consensus 190 ~PG~v~T~ 197 (257)
T PRK08594 190 SAGPIRTL 197 (257)
T ss_pred ecCcccCH
Confidence 99998654
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.5e-10 Score=106.74 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=76.1
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
-+++++++||||+|+||++++++|++.|. +|+++.|+.... ..... . .....+. |++
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~---~Vi~~~r~~~~~-----~~~~~-------~-~~~~~~~~D~~------ 68 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGA---KVIGLTHSKINN-----SESND-------E-SPNEWIKWECG------ 68 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEECCchhh-----hhhhc-------c-CCCeEEEeeCC------
Confidence 35689999999999999999999999875 677788864211 11000 0 0112233 776
Q ss_pred CHHHHHHHhcCccEEEEccccccc----hHHHHHHHHHhHHHHHHHHHHHHH
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRF----DEELKEAIRTNMCATQTMLDLAKQ 220 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~ 220 (545)
+.+++...+.++|++|||||.... .+.++..+++|+.|+.++++.+..
T Consensus 69 ~~~~~~~~~~~iDilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 120 (245)
T PRK12367 69 KEESLDKQLASLDVLILNHGINPGGRQDPENINKALEINALSSWRLLELFED 120 (245)
T ss_pred CHHHHHHhcCCCCEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566777778899999999996421 355778899999999999998765
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-11 Score=114.01 Aligned_cols=219 Identities=15% Similarity=0.032 Sum_probs=135.1
Q ss_pred hcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+ +.||.+++++|++.|. +|++..|+... .+.+.+... .+. ...++. |++
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~---~v~l~~r~~~~---~~~~~~~~~----~~~--~~~~~~~D~~----- 70 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGA---ELAVTYLNDKA---RPYVEPLAE----ELD--APIFLPLDVR----- 70 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC---EEEEEeCChhh---HHHHHHHHH----hhc--cceEEecCcC-----
Confidence 468999999998 5999999999999875 57777776421 222222111 111 112333 887
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
+.+++++++ ..+|++|||||.... .+.++..+++|+.|+..+++.+... ..-.++|++||
T Consensus 71 -~~~~v~~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss 149 (258)
T PRK07533 71 -EPGQLEAVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSY 149 (258)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 445554443 368999999986421 2456788999999999999877542 12247899998
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
....... .....|+.||+..+.+.+..+ .++++..+
T Consensus 150 ~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v 190 (258)
T PRK07533 150 YGAEKVV---------------------------------------ENYNLMGPVKAALESSVRYLAAELGPKGIRVHAI 190 (258)
T ss_pred cccccCC---------------------------------------ccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEE
Confidence 7542110 111579999999988887764 68999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
.||.|-.+.... + ............ .. + ...+...+|+|++++.++..... ...+.++.
T Consensus 191 ~PG~v~T~~~~~---~----~~~~~~~~~~~~-~~---p-----~~r~~~p~dva~~~~~L~s~~~~-----~itG~~i~ 249 (258)
T PRK07533 191 SPGPLKTRAASG---I----DDFDALLEDAAE-RA---P-----LRRLVDIDDVGAVAAFLASDAAR-----RLTGNTLY 249 (258)
T ss_pred ecCCcCChhhhc---c----CCcHHHHHHHHh-cC---C-----cCCCCCHHHHHHHHHHHhChhhc-----cccCcEEe
Confidence 999886542111 0 000111111111 00 0 12356789999999988764321 12355665
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 250 vdgg 253 (258)
T PRK07533 250 IDGG 253 (258)
T ss_pred eCCc
Confidence 5443
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-11 Score=116.19 Aligned_cols=219 Identities=13% Similarity=0.025 Sum_probs=134.9
Q ss_pred hcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||++ .||++++++|++.|. +|++..|+.. ..+++..... .+. ....+. |++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga---~V~~~~r~~~---~~~~~~~~~~----~~g--~~~~~~~Dv~----- 67 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA---ELAFTYQGEA---LGKRVKPLAE----SLG--SDFVLPCDVE----- 67 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC---EEEEecCchH---HHHHHHHHHH----hcC--CceEEeCCCC-----
Confidence 4689999999997 999999999999876 5666666531 1222222111 110 111233 887
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
+.++++.++ ..+|++|||||.... .+.++..+++|+.++.++++.+... .+-.++|++||
T Consensus 68 -d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS 146 (271)
T PRK06505 68 -DIASVDAVFEALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTY 146 (271)
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcC
Confidence 455555444 368999999996421 2456778899999999998877542 11257999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
.+..... +....|+.||+..+.+.+..+ .|+++..+
T Consensus 147 ~~~~~~~---------------------------------------~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v 187 (271)
T PRK06505 147 GGSTRVM---------------------------------------PNYNVMGVAKAALEASVRYLAADYGPQGIRVNAI 187 (271)
T ss_pred CCccccC---------------------------------------CccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEE
Confidence 7543211 111579999999988887765 58999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
.||.|-.+.... ............. ..+ .--+...+|+|++++.++..... ...+.+..
T Consensus 188 ~PG~i~T~~~~~-------~~~~~~~~~~~~~-~~p--------~~r~~~peeva~~~~fL~s~~~~-----~itG~~i~ 246 (271)
T PRK06505 188 SAGPVRTLAGAG-------IGDARAIFSYQQR-NSP--------LRRTVTIDEVGGSALYLLSDLSS-----GVTGEIHF 246 (271)
T ss_pred ecCCcccccccc-------CcchHHHHHHHhh-cCC--------ccccCCHHHHHHHHHHHhCcccc-----ccCceEEe
Confidence 999986642111 0000111111111 111 11245679999999988764322 12355666
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 247 vdgG 250 (271)
T PRK06505 247 VDSG 250 (271)
T ss_pred ecCC
Confidence 5554
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=112.36 Aligned_cols=208 Identities=14% Similarity=0.087 Sum_probs=129.3
Q ss_pred hcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+.+|+++||||+ +.||.+++++|++.|+ +|++..|+.......+.+.++... . .....+. |++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~---~v~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~Dl~----- 69 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGA---ELGITYLPDEKGRFEKKVRELTEP----L--NPSLFLPCDVQ----- 69 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCC---EEEEEecCcccchHHHHHHHHHhc----c--CcceEeecCcC-----
Confidence 357999999986 7999999999999876 566655653321122222221110 0 0122333 887
Q ss_pred CCHHHHHHHh-------cCccEEEEcccccc-------c----hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLR-------F----DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~-------~----~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
+.++++.++ ..+|++|||||... + .+.++..+++|+.|+..+++.+... ..-.++|++||
T Consensus 70 -d~~~v~~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS 148 (258)
T PRK07370 70 -DDAQIEETFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTY 148 (258)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 445555444 36899999999642 1 2456778899999999988876541 12258999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
....... +....|+.||+..+.+.+..+ .++++..+
T Consensus 149 ~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i 189 (258)
T PRK07370 149 LGGVRAI---------------------------------------PNYNVMGVAKAALEASVRYLAAELGPKNIRVNAI 189 (258)
T ss_pred cccccCC---------------------------------------cccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEE
Confidence 7543211 011579999999999988765 67999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.||.|-.+......+ .......... . .....+...+|+++++..++...
T Consensus 190 ~PG~v~T~~~~~~~~-------~~~~~~~~~~-~--------~p~~r~~~~~dva~~~~fl~s~~ 238 (258)
T PRK07370 190 SAGPIRTLASSAVGG-------ILDMIHHVEE-K--------APLRRTVTQTEVGNTAAFLLSDL 238 (258)
T ss_pred ecCcccCchhhcccc-------chhhhhhhhh-c--------CCcCcCCCHHHHHHHHHHHhChh
Confidence 999986542111000 0111111110 0 01123566799999999887643
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-11 Score=116.11 Aligned_cols=243 Identities=9% Similarity=0.030 Sum_probs=135.4
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lgl~ 173 (545)
+|+++|||| |+||+++++.|. .|. +|+++.|+.. .++.... .++.. ...++. |++ +
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~---~Vv~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~Dv~------d 60 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGK---KVLLADYNEE------NLEAAAK----TLREAGFDVSTQEVDVS------S 60 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCC---EEEEEeCCHH------HHHHHHH----HHHhcCCeEEEEEeecC------C
Confidence 478999998 689999999995 554 6888888632 1211111 11111 222344 887 4
Q ss_pred HHHHHHHhc------CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCCcccccc
Q psy16252 174 PDDKRLVTS------KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRKNIEEII 246 (545)
Q Consensus 174 ~~~~~~l~~------~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i~E~~ 246 (545)
.+++..+++ .+|+||||||.......++..+++|+.|+.++++.+... ..-.+.|++||.+.........+..
T Consensus 61 ~~~i~~~~~~~~~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~ 140 (275)
T PRK06940 61 RESVKALAATAQTLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQE 140 (275)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhh
Confidence 455554443 589999999986556678889999999999999987652 1113567777775432210000000
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhh---hhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCC
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETR---ERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKE 318 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~ 318 (545)
...+. .+.+.+.... +.........|+.||+..+.+.+..+ .++++..+.||.|..+...
T Consensus 141 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~ 208 (275)
T PRK06940 141 RALAT------------TPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQ 208 (275)
T ss_pred ccccc------------cccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccch
Confidence 00000 0000000000 00000122579999999888887653 6899999999998665211
Q ss_pred CCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 319 PIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 319 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
. .+... .......... . .+ .--+...+|+|+++..++..... ...+.++.+.++
T Consensus 209 ~--~~~~~---~~~~~~~~~~-~---~p-----~~r~~~peeia~~~~fL~s~~~~-----~itG~~i~vdgg 262 (275)
T PRK06940 209 D--ELNGP---RGDGYRNMFA-K---SP-----AGRPGTPDEIAALAEFLMGPRGS-----FITGSDFLVDGG 262 (275)
T ss_pred h--hhcCC---chHHHHHHhh-h---CC-----cccCCCHHHHHHHHHHHcCcccC-----cccCceEEEcCC
Confidence 0 00000 0011111111 0 01 12367889999999887754322 123566666554
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.3e-10 Score=107.42 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=126.5
Q ss_pred hcCcEEEEecc--ccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGA--TGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGa--tGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+++|||| ++.||.+++++|++.|. +|++..|+... +.++... ..+. ....++. |++
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~---~v~l~~r~~~~----~~~~~~~----~~~~-~~~~~~~~Dv~----- 67 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGA---EVVLTGFGRAL----RLTERIA----KRLP-EPAPVLELDVT----- 67 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCC---EEEEecCccch----hHHHHHH----HhcC-CCCcEEeCCCC-----
Confidence 45799999999 89999999999999875 67777775321 1111111 1111 1233344 887
Q ss_pred CCHHHHHHHh-------cCccEEEEcccccc-------c----hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLR-------F----DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~-------~----~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
+.++++.++ ..+|++|||||... + .+.+...+++|+.|+..+++.+... ..-.++|++|+
T Consensus 68 -~~~~i~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~ 146 (256)
T PRK07889 68 -NEEHLASLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF 146 (256)
T ss_pred -CHHHHHHHHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence 445554443 36899999999752 1 1345667899999999988877642 11247888875
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
....+. .....|+.||+..+.+.+..+ .|+++..+
T Consensus 147 ~~~~~~----------------------------------------~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v 186 (256)
T PRK07889 147 DATVAW----------------------------------------PAYDWMGVAKAALESTNRYLARDLGPRGIRVNLV 186 (256)
T ss_pred cccccC----------------------------------------CccchhHHHHHHHHHHHHHHHHHhhhcCeEEEee
Confidence 432110 011468999999988887764 67999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.||.|-.+.....++ ........... . + ....+...+|||++++.++...
T Consensus 187 ~PG~v~T~~~~~~~~-------~~~~~~~~~~~-~---p----~~~~~~~p~evA~~v~~l~s~~ 236 (256)
T PRK07889 187 AAGPIRTLAAKAIPG-------FELLEEGWDER-A---P----LGWDVKDPTPVARAVVALLSDW 236 (256)
T ss_pred ccCcccChhhhcccC-------cHHHHHHHHhc-C---c----cccccCCHHHHHHHHHHHhCcc
Confidence 999986643211111 01111111110 0 0 0113567899999999887653
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.2e-11 Score=114.73 Aligned_cols=220 Identities=9% Similarity=0.010 Sum_probs=136.7
Q ss_pred hhcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l 170 (545)
.+++|+++||||+ +.||.++++.|++.|. +|++..|+.. ..+++++.... +. ....+. |++
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~---~V~l~~r~~~---~~~~~~~l~~~----~~--~~~~~~~Dl~---- 70 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA---ELAFTYQGDA---LKKRVEPLAAE----LG--AFVAGHCDVT---- 70 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCchH---HHHHHHHHHHh----cC--CceEEecCCC----
Confidence 3568999999997 8999999999999876 5666666421 12333332111 11 111233 887
Q ss_pred CCCHHHHHHHhc-------CccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEe
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVS 231 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vS 231 (545)
+.++++.+++ .+|++|||||.... .+.++..+++|+.++..+++.+... .+-.++|++|
T Consensus 71 --~~~~v~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~is 148 (272)
T PRK08159 71 --DEASIDAVFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLT 148 (272)
T ss_pred --CHHHHHHHHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4555555443 58999999996421 2456788899999999999887652 2225889999
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
|....... .....|+.||+..+.+.+..+ .++++..
T Consensus 149 s~~~~~~~---------------------------------------p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~ 189 (272)
T PRK08159 149 YYGAEKVM---------------------------------------PHYNVMGVAKAALEASVKYLAVDLGPKNIRVNA 189 (272)
T ss_pred ccccccCC---------------------------------------CcchhhhhHHHHHHHHHHHHHHHhcccCeEEEE
Confidence 86532110 111579999999988887764 6799999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
+.||.|........+ .. ... ........+ .-.+...+|+|++++.++..... ...+.++
T Consensus 190 v~PG~v~T~~~~~~~----~~---~~~-~~~~~~~~p--------~~r~~~peevA~~~~~L~s~~~~-----~itG~~i 248 (272)
T PRK08159 190 ISAGPIKTLAASGIG----DF---RYI-LKWNEYNAP--------LRRTVTIEEVGDSALYLLSDLSR-----GVTGEVH 248 (272)
T ss_pred eecCCcCCHHHhcCC----cc---hHH-HHHHHhCCc--------ccccCCHHHHHHHHHHHhCcccc-----CccceEE
Confidence 999998653211110 00 000 000000001 11246789999999988764332 1235666
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
.+.++
T Consensus 249 ~vdgG 253 (272)
T PRK08159 249 HVDSG 253 (272)
T ss_pred EECCC
Confidence 66654
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=111.70 Aligned_cols=163 Identities=13% Similarity=0.130 Sum_probs=106.8
Q ss_pred EEEEeccccccchHHHHHHHh----hCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 99 EILMTGATGFLGKLLIEKLLR----SFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~----~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
.++||||+|.||.+++++|.+ .|. +|+++.|+.. +++.....+-.........++. |++ +
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~---~V~~~~r~~~------~~~~~~~~l~~~~~~~~v~~~~~Dl~------~ 66 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS---VLVLSARNDE------ALRQLKAEIGAERSGLRVVRVSLDLG------A 66 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc---EEEEEEcCHH------HHHHHHHHHHhcCCCceEEEEEeccC------C
Confidence 589999999999999999987 443 6888888642 2222111110000011223334 887 4
Q ss_pred HHHHHHHhcC-----------ccEEEEcccccc-----c-----hHHHHHHHHHhHHHHHHHHHHHHHc----cC-CceE
Q psy16252 174 PDDKRLVTSK-----------VNLVFHCAATLR-----F-----DEELKEAIRTNMCATQTMLDLAKQC----KN-LKMF 227 (545)
Q Consensus 174 ~~~~~~l~~~-----------vd~Vih~Aa~~~-----~-----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~-~~~~ 227 (545)
.++++.+++. .|+||||||... + .+.++..+++|+.|+..+.+.+... ++ ..++
T Consensus 67 ~~~v~~~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~i 146 (256)
T TIGR01500 67 EAGLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTV 146 (256)
T ss_pred HHHHHHHHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEE
Confidence 5555554431 258999999632 1 2456778999999988887766542 11 2579
Q ss_pred EEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCC
Q psy16252 228 TYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFF 302 (545)
Q Consensus 228 v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l 302 (545)
|++||....... .....|+.||...+.+.+..+ .++
T Consensus 147 v~isS~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~e~~~~~i 187 (256)
T TIGR01500 147 VNISSLCAIQPF---------------------------------------KGWALYCAGKAARDMLFQVLALEEKNPNV 187 (256)
T ss_pred EEECCHHhCCCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 999998654221 111579999999999888764 679
Q ss_pred CEEEEccceeecc
Q psy16252 303 PVCIFRPSIVIST 315 (545)
Q Consensus 303 ~~~i~Rp~~i~g~ 315 (545)
.++.+.||.|-.+
T Consensus 188 ~v~~v~PG~v~T~ 200 (256)
T TIGR01500 188 RVLNYAPGVLDTD 200 (256)
T ss_pred EEEEecCCcccch
Confidence 9999999988553
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >KOG3019|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=106.92 Aligned_cols=234 Identities=15% Similarity=0.069 Sum_probs=145.0
Q ss_pred CcEEEEeccccccchHHHHHHH-----hhC-CCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLL-----RSF-PRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDL 170 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll-----~~g-~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~l 170 (545)
++..++-+++|+++..|..... ..+ .+...|.++.|.+..... .|+.+ |. +.
T Consensus 12 sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~ri----------tw~el---------~~--~G- 69 (315)
T KOG3019|consen 12 SRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKARI----------TWPEL---------DF--PG- 69 (315)
T ss_pred cccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCccc----------ccchh---------cC--CC-
Confidence 4567888999999987765332 111 012468888898754310 12111 11 11
Q ss_pred CCCHHHHHHHhcCccEEEEccccc------cchHHH-HHHHHHhHHHHHHHHHHHHHccCC-ceEEEEeccccccCCC--
Q psy16252 171 GLSPDDKRLVTSKVNLVFHCAATL------RFDEEL-KEAIRTNMCATQTMLDLAKQCKNL-KMFTYVSTAFSNSYRK-- 240 (545)
Q Consensus 171 gl~~~~~~~l~~~vd~Vih~Aa~~------~~~~~~-~~~~~~Nv~gt~~ll~~a~~~~~~-~~~v~vSS~~v~~~~~-- 240 (545)
+.-.|+.+++.++.. +++..+ ++.+...+..|..|+++...++.. +.+|.+|..++|-+..
T Consensus 70 ---------ip~sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~ 140 (315)
T KOG3019|consen 70 ---------IPISCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQ 140 (315)
T ss_pred ---------CceehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccccc
Confidence 111344444444432 233333 344455566688999999988765 4899999998886632
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCC
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPI 320 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~ 320 (545)
..+|+.... ..+....-=...|........+.+++++|.|.|.|.....
T Consensus 141 eY~e~~~~q------------------------------gfd~~srL~l~WE~aA~~~~~~~r~~~iR~GvVlG~gGGa- 189 (315)
T KOG3019|consen 141 EYSEKIVHQ------------------------------GFDILSRLCLEWEGAALKANKDVRVALIRIGVVLGKGGGA- 189 (315)
T ss_pred ccccccccC------------------------------ChHHHHHHHHHHHHHhhccCcceeEEEEEEeEEEecCCcc-
Confidence 222322111 1111111111224444444467899999999999975432
Q ss_pred CCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHH
Q psy16252 321 PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGE 400 (545)
Q Consensus 321 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~e 400 (545)
.+.+-+..+++.|. -.+++++.++|||+||+++.|..++.++.. .++.|-+.| ++++..|
T Consensus 190 -------~~~M~lpF~~g~GG---PlGsG~Q~fpWIHv~DL~~li~~ale~~~v--------~GViNgvAP--~~~~n~E 249 (315)
T KOG3019|consen 190 -------LAMMILPFQMGAGG---PLGSGQQWFPWIHVDDLVNLIYEALENPSV--------KGVINGVAP--NPVRNGE 249 (315)
T ss_pred -------hhhhhhhhhhccCC---cCCCCCeeeeeeehHHHHHHHHHHHhcCCC--------CceecccCC--CccchHH
Confidence 11112222233333 247899999999999999999999998776 689999998 9999999
Q ss_pred HHHHHHHhhccc
Q psy16252 401 FITKSLKEGVKI 412 (545)
Q Consensus 401 l~~~l~~~~~~~ 412 (545)
+++.+...++++
T Consensus 250 f~q~lg~aL~Rp 261 (315)
T KOG3019|consen 250 FCQQLGSALSRP 261 (315)
T ss_pred HHHHHHHHhCCC
Confidence 999999998874
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=113.45 Aligned_cols=219 Identities=13% Similarity=0.011 Sum_probs=134.4
Q ss_pred hcCcEEEEecc--ccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGA--TGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGa--tGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+++|||| ++.||.+++++|++.|. +|++..|... ..++++.... .+. ....+. |++
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~---~v~~~~~~~~---~~~~~~~~~~----~~~--~~~~~~~Dv~----- 66 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGA---ELAFTYVGDR---FKDRITEFAA----EFG--SDLVFPCDVA----- 66 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCC---eEEEEccchH---HHHHHHHHHH----hcC--CcceeeccCC-----
Confidence 46799999996 67999999999999876 5666555421 1223322211 111 111233 887
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc------------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEe
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF------------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVS 231 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~------------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vS 231 (545)
++++++.++ ..+|++|||||.... .+.++..+++|+.++..+++++... .+-.++|++|
T Consensus 67 -d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~is 145 (260)
T PRK06997 67 -SDEQIDALFASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 145 (260)
T ss_pred -CHHHHHHHHHHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEe
Confidence 445555544 368999999986421 2356678899999999998887652 2235799999
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
|....... .....|+.||+..+.+.+..+ .++++..
T Consensus 146 s~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~ 186 (260)
T PRK06997 146 YLGAERVV---------------------------------------PNYNTMGLAKASLEASVRYLAVSLGPKGIRANG 186 (260)
T ss_pred ccccccCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEE
Confidence 87643211 111579999999988887764 6799999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
+.||.|-.+... .+ ............ .. + .-.+..++||++++..++..... ...+.++
T Consensus 187 i~PG~v~T~~~~---~~----~~~~~~~~~~~~-~~------p--~~r~~~pedva~~~~~l~s~~~~-----~itG~~i 245 (260)
T PRK06997 187 ISAGPIKTLAAS---GI----KDFGKILDFVES-NA------P--LRRNVTIEEVGNVAAFLLSDLAS-----GVTGEIT 245 (260)
T ss_pred EeeCccccchhc---cc----cchhhHHHHHHh-cC------c--ccccCCHHHHHHHHHHHhCcccc-----CcceeEE
Confidence 999988553211 00 000111111111 00 0 11357789999999988765322 1235666
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
.+.++
T Consensus 246 ~vdgg 250 (260)
T PRK06997 246 HVDSG 250 (260)
T ss_pred EEcCC
Confidence 65543
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=112.71 Aligned_cols=219 Identities=14% Similarity=0.034 Sum_probs=133.5
Q ss_pred hcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||++ .||+++++.|++.|+ +|+...|+.. ..+.++++.. .. .....+. |++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~---~vil~~r~~~---~~~~~~~~~~----~~--~~~~~~~~Dl~----- 66 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA---ELAFTYQNDK---LKGRVEEFAA----QL--GSDIVLPCDVA----- 66 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC---EEEEEecchh---HHHHHHHHHh----cc--CCceEeecCCC-----
Confidence 5689999999985 899999999999876 5666666521 1122222111 00 1122333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc------------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEe
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF------------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVS 231 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~------------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vS 231 (545)
+.++++.+++ .+|++|||||.... .+.++..+++|+.|...+.+.+... ..-.++|++|
T Consensus 67 -~~~~v~~~~~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 145 (262)
T PRK07984 67 -EDASIDAMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 145 (262)
T ss_pred -CHHHHHHHHHHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 5556655543 57999999986421 2345677899999988888876542 1125799999
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
|.+..... .....|+.||...+.+.+..+ .++++..
T Consensus 146 s~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~ 186 (262)
T PRK07984 146 YLGAERAI---------------------------------------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNA 186 (262)
T ss_pred cCCCCCCC---------------------------------------CCcchhHHHHHHHHHHHHHHHHHhcccCcEEee
Confidence 87643111 111579999999999988765 5899999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
+-||.|-.+... .+ .....+...... .. ....+...+||+++++.++..... ...+.++
T Consensus 187 i~PG~v~T~~~~---~~----~~~~~~~~~~~~-~~--------p~~r~~~pedva~~~~~L~s~~~~-----~itG~~i 245 (262)
T PRK07984 187 ISAGPIRTLAAS---GI----KDFRKMLAHCEA-VT--------PIRRTVTIEDVGNSAAFLCSDLSA-----GISGEVV 245 (262)
T ss_pred eecCcccchHHh---cC----CchHHHHHHHHH-cC--------CCcCCCCHHHHHHHHHHHcCcccc-----cccCcEE
Confidence 999988553211 00 000111111111 00 112356789999999988765332 1235566
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
.+.++
T Consensus 246 ~vdgg 250 (262)
T PRK07984 246 HVDGG 250 (262)
T ss_pred EECCC
Confidence 55544
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=113.49 Aligned_cols=219 Identities=15% Similarity=0.019 Sum_probs=132.4
Q ss_pred hcCcEEEEecc--ccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGA--TGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGa--tGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+++|||| ++.||+++++.|++.|. +|++..|... ..+.+++... ... ....+. |++
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~---~v~~~~~~~~---~~~~~~~~~~----~~~--~~~~~~~Dv~----- 66 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGA---ELAFTYVVDK---LEERVRKMAA----ELD--SELVFRCDVA----- 66 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCcHH---HHHHHHHHHh----ccC--CceEEECCCC-----
Confidence 56899999997 67999999999999875 5666555421 1222222111 000 111233 887
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc--------h----HHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEE
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF--------D----EELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYV 230 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~--------~----~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~v 230 (545)
+.++++.++ ..+|++|||||.... . +.++..+++|+.++..+.+.+... .+-.++|++
T Consensus 67 -~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~i 145 (261)
T PRK08690 67 -SDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVAL 145 (261)
T ss_pred -CHHHHHHHHHHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEE
Confidence 455555554 368999999997531 1 235566789999988888765531 122579999
Q ss_pred eccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 231 STAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 231 SS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
||....... +....|+.||+..+.+.+..+ .|+++.
T Consensus 146 ss~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn 186 (261)
T PRK08690 146 SYLGAVRAI---------------------------------------PNYNVMGMAKASLEAGIRFTAACLGKEGIRCN 186 (261)
T ss_pred cccccccCC---------------------------------------CCcccchhHHHHHHHHHHHHHHHhhhcCeEEE
Confidence 987653211 111579999999998887654 689999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
.+.||.|-.+... ++ ............ .. ....+...+|||++++.++..... ...+.+
T Consensus 187 ~i~PG~v~T~~~~---~~----~~~~~~~~~~~~-~~--------p~~r~~~peevA~~v~~l~s~~~~-----~~tG~~ 245 (261)
T PRK08690 187 GISAGPIKTLAAS---GI----ADFGKLLGHVAA-HN--------PLRRNVTIEEVGNTAAFLLSDLSS-----GITGEI 245 (261)
T ss_pred EEecCcccchhhh---cC----CchHHHHHHHhh-cC--------CCCCCCCHHHHHHHHHHHhCcccC-----CcceeE
Confidence 9999998654211 11 000111111111 11 112367789999999998765322 123555
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
+.+.++
T Consensus 246 i~vdgG 251 (261)
T PRK08690 246 TYVDGG 251 (261)
T ss_pred EEEcCC
Confidence 555443
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.7e-10 Score=109.01 Aligned_cols=160 Identities=16% Similarity=0.134 Sum_probs=106.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|+|+||||+|.||++++++|++.|+ +|+++.|+.. .+.+... .++. ....++. |++ +.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~Dv~------d~~ 61 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA---RVVISSRNEE------NLEKALK----ELKEYGEVYAVKADLS------DKD 61 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC---EEEEEeCCHH------HHHHHHH----HHHhcCCceEEEcCCC------CHH
Confidence 5799999999999999999999875 6888887642 2222111 1111 1223334 887 455
Q ss_pred HHHHHh-------cCccEEEEcccccc-----c----hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecccc
Q psy16252 176 DKRLVT-------SKVNLVFHCAATLR-----F----DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFS 235 (545)
Q Consensus 176 ~~~~l~-------~~vd~Vih~Aa~~~-----~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v 235 (545)
+++.++ ..+|+|||+||... + .+.+...+.+|+.++..+.+.+. +..+-.++|++||..+
T Consensus 62 ~~~~~~~~~~~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~ 141 (259)
T PRK08340 62 DLKNLVKEAWELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSV 141 (259)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCccc
Confidence 555554 36899999999642 1 12345556788887665554432 1123468999999866
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..+.+.+..+ .|+++..+.||
T Consensus 142 ~~~~---------------------------------------~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG 182 (259)
T PRK08340 142 KEPM---------------------------------------PPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLG 182 (259)
T ss_pred CCCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 4221 011579999999999888765 57899999999
Q ss_pred eeecc
Q psy16252 311 IVIST 315 (545)
Q Consensus 311 ~i~g~ 315 (545)
.|-.+
T Consensus 183 ~v~t~ 187 (259)
T PRK08340 183 SFDTP 187 (259)
T ss_pred cccCc
Confidence 87554
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-10 Score=111.35 Aligned_cols=205 Identities=12% Similarity=0.086 Sum_probs=127.8
Q ss_pred hcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||++ .||.++++.|.+.|. +|+...|+.. ..+.+.+... .. .....+. |++
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~---~v~~~~r~~~---~~~~~~~l~~----~~--g~~~~~~~Dv~----- 68 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGA---ELWFTYQSEV---LEKRVKPLAE----EI--GCNFVSELDVT----- 68 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCC---EEEEEeCchH---HHHHHHHHHH----hc--CCceEEEccCC-----
Confidence 4679999999997 799999999999875 5666666421 1222222111 11 0111233 888
Q ss_pred CCHHHHHHHh-------cCccEEEEcccccc-----------chHHHHHHHHHhHHHHHHHHHHHHH-ccCCceEEEEec
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLR-----------FDEELKEAIRTNMCATQTMLDLAKQ-CKNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~~~v~vSS 232 (545)
++++++.++ ..+|++||+|+... ..+.++..+++|+.++..+++.+.. +..-.++|++||
T Consensus 69 -~~~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS 147 (260)
T PRK06603 69 -NPKSISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTY 147 (260)
T ss_pred -CHHHHHHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEec
Confidence 445555444 35899999998642 1245677889999999999887653 212258999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
....... .....|+.||+..+.+.+..+ .++++..+
T Consensus 148 ~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v 188 (260)
T PRK06603 148 YGAEKVI---------------------------------------PNYNVMGVAKAALEASVKYLANDMGENNIRVNAI 188 (260)
T ss_pred CccccCC---------------------------------------CcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEE
Confidence 7543110 111579999999998887765 67999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.||.|-.+.....+ . .......... .. + ...+...+|+|++++.++...
T Consensus 189 ~PG~v~T~~~~~~~----~---~~~~~~~~~~-~~---p-----~~r~~~pedva~~~~~L~s~~ 237 (260)
T PRK06603 189 SAGPIKTLASSAIG----D---FSTMLKSHAA-TA---P-----LKRNTTQEDVGGAAVYLFSEL 237 (260)
T ss_pred ecCcCcchhhhcCC----C---cHHHHHHHHh-cC---C-----cCCCCCHHHHHHHHHHHhCcc
Confidence 99998654211100 0 0111111111 11 1 112466799999999987643
|
|
| >KOG1221|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-11 Score=120.98 Aligned_cols=74 Identities=45% Similarity=0.741 Sum_probs=65.7
Q ss_pred CCChhhhcCCCeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecccCCCChHHHHHHhhhchhhHHHHhhCCC
Q psy16252 6 PPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIRNRPN 79 (545)
Q Consensus 6 ~~~~~~~~~~~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 79 (545)
.+++.+||.++++|+||||||+|+.|+++|+|++|++++||.|+|++++.++.+|+.++..++.|....+.+++
T Consensus 3 ~~~i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~ 76 (467)
T KOG1221|consen 3 ISDIVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPE 76 (467)
T ss_pred cccHHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCcc
Confidence 45699999999999999999999999999999999999999999999999999999999998544444444443
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.6e-10 Score=99.74 Aligned_cols=146 Identities=20% Similarity=0.255 Sum_probs=105.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCCCCH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLGLSP 174 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lgl~~ 174 (545)
|+|+||||+|.||..+++.|+++| ..+|+++.|+ ...++..... ..++... ..+++ |++ +.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g--~~~v~~~~r~----~~~~~~~~l~----~~l~~~~~~~~~~~~D~~------~~ 64 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRG--ARVVILTSRS----EDSEGAQELI----QELKAPGAKITFIECDLS------DP 64 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT--TEEEEEEESS----CHHHHHHHHH----HHHHHTTSEEEEEESETT------SH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC--ceEEEEeeec----cccccccccc----cccccccccccccccccc------cc
Confidence 689999999999999999999984 3478888887 1223333322 2222222 23344 877 55
Q ss_pred HHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~ 240 (545)
++++.+++ .+|++|||||... ..+.++..+++|+.+...+.+++.. .+-.++|++||.......
T Consensus 65 ~~~~~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~~~~~~- 142 (167)
T PF00106_consen 65 ESIRALIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIAGVRGS- 142 (167)
T ss_dssp HHHHHHHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGGGTSSS-
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchhhccCC-
Confidence 56655543 6899999999864 2356688899999999999999988 467899999998765322
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA 299 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~ 299 (545)
.....|+.||+..+.+.+..+
T Consensus 143 --------------------------------------~~~~~Y~askaal~~~~~~la 163 (167)
T PF00106_consen 143 --------------------------------------PGMSAYSASKAALRGLTQSLA 163 (167)
T ss_dssp --------------------------------------TTBHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------CCChhHHHHHHHHHHHHHHHH
Confidence 112589999999999988764
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-10 Score=120.56 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=113.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+++||||++.||.++++.|++.|+ +|+++.|+.. ++...... +. .....+. |++ ++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~---~V~~~~r~~~------~~~~~~~~----~~-~~~~~~~~D~~------~~ 63 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD---QVVVADRNVE------RARERADS----LG-PDHHALAMDVS------DE 63 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHH----hC-CceeEEEeccC------CH
Confidence 579999999999999999999999875 6788878642 22221111 10 1122233 887 44
Q ss_pred HHHHHHh-------cCccEEEEcccccc---------chHHHHHHHHHhHHHHHHHHHHHHHc---cCC-ceEEEEeccc
Q psy16252 175 DDKRLVT-------SKVNLVFHCAATLR---------FDEELKEAIRTNMCATQTMLDLAKQC---KNL-KMFTYVSTAF 234 (545)
Q Consensus 175 ~~~~~l~-------~~vd~Vih~Aa~~~---------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~-~~~v~vSS~~ 234 (545)
++++.++ ..+|++||+||... ..+.++..+++|+.++..+++++... .+- .++|++||..
T Consensus 64 ~~~~~~~~~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~ 143 (520)
T PRK06484 64 AQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGA 143 (520)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcc
Confidence 5555544 35899999998621 12456788999999999999887653 122 3899999986
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... .....|+.||+..+.+++..+ .+++++.+.|
T Consensus 144 ~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~P 184 (520)
T PRK06484 144 GLVAL---------------------------------------PKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLP 184 (520)
T ss_pred cCCCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEcc
Confidence 54321 112679999999999887764 5799999999
Q ss_pred ceeecc
Q psy16252 310 SIVIST 315 (545)
Q Consensus 310 ~~i~g~ 315 (545)
|.|-.+
T Consensus 185 g~v~t~ 190 (520)
T PRK06484 185 GYVRTQ 190 (520)
T ss_pred CCcCch
Confidence 988654
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.4e-10 Score=104.83 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=106.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lg 171 (545)
+++++++||||++.||++++++|.+.|. +|++..|..+ ++++... .+.... ...+. |+.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~---~V~~~~r~~~------~l~~~~~----~i~~~~~~~~~~~~D~~----- 64 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA---TLILCDQDQS------ALKDTYE----QCSALTDNVYSFQLKDF----- 64 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC---EEEEEcCCHH------HHHHHHH----HHHhcCCCeEEEEccCC-----
Confidence 3579999999999999999999999875 6777777642 2222111 111111 11222 766
Q ss_pred CCHHHHHHHh-------c-CccEEEEcccccc----c----hHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEe
Q psy16252 172 LSPDDKRLVT-------S-KVNLVFHCAATLR----F----DEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVS 231 (545)
Q Consensus 172 l~~~~~~~l~-------~-~vd~Vih~Aa~~~----~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vS 231 (545)
+.++++.++ . .+|++||+||... + .+.+...+++|+.++..+++.+.. .++-..+|++|
T Consensus 65 -~~~~~~~~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~is 143 (227)
T PRK08862 65 -SQESIRHLFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVI 143 (227)
T ss_pred -CHHHHHHHHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 445555443 3 6899999997432 1 134555678888888777665442 21235899999
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
|...... ...|+.||+..+.+.+..+ .++++..
T Consensus 144 S~~~~~~------------------------------------------~~~Y~asKaal~~~~~~la~el~~~~Irvn~ 181 (227)
T PRK08862 144 SHDDHQD------------------------------------------LTGVESSNALVSGFTHSWAKELTPFNIRVGG 181 (227)
T ss_pred cCCCCCC------------------------------------------cchhHHHHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 8643210 1469999999888887764 6799999
Q ss_pred Eccceeecc
Q psy16252 307 FRPSIVIST 315 (545)
Q Consensus 307 ~Rp~~i~g~ 315 (545)
+.||.|-.+
T Consensus 182 v~PG~i~t~ 190 (227)
T PRK08862 182 VVPSIFSAN 190 (227)
T ss_pred EecCcCcCC
Confidence 999987554
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.6e-10 Score=111.58 Aligned_cols=190 Identities=15% Similarity=0.121 Sum_probs=109.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhC-CCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSF-PRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g-~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl 172 (545)
+++++|||||+.||.++++.|++.| + +|++..|+.. +..+... .+.. ....++. |++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~---~V~l~~r~~~------~~~~~~~----~l~~~~~~~~~~~~Dl~------ 63 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW---HVIMACRDFL------KAEQAAK----SLGMPKDSYTIMHLDLG------ 63 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC---EEEEEeCCHH------HHHHHHH----HhcCCCCeEEEEEcCCC------
Confidence 5899999999999999999999987 4 6888888642 1211111 1111 1122333 887
Q ss_pred CHHHHHHHh-------cCccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHH----cc-CCceEEEEec
Q psy16252 173 SPDDKRLVT-------SKVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQ----CK-NLKMFTYVST 232 (545)
Q Consensus 173 ~~~~~~~l~-------~~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~~~~v~vSS 232 (545)
+.++++.++ .++|++||+||.... .+.++..+++|+.|+..+++.+.. .+ +..++|++||
T Consensus 64 ~~~~v~~~~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS 143 (314)
T TIGR01289 64 SLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS 143 (314)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence 444444333 368999999996421 245677889999998888776543 21 1369999999
Q ss_pred cccccCCC--cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc------cCCCE
Q psy16252 233 AFSNSYRK--NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA------QFFPV 304 (545)
Q Consensus 233 ~~v~~~~~--~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~------~~l~~ 304 (545)
...+.... .+. .+.+..++...... .... ..-... ........|+.||+....+.+... .++.+
T Consensus 144 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v 215 (314)
T TIGR01289 144 ITGNTNTLAGNVP-----PKANLGDLSGLAAG-FKAP-IAMIDG-KEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITF 215 (314)
T ss_pred CccccccCCCcCC-----Cccccccccccccc-CCCc-ccccCC-CCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEE
Confidence 97653210 000 00000000000000 0000 000000 000111579999999766665543 36889
Q ss_pred EEEccceee
Q psy16252 305 CIFRPSIVI 313 (545)
Q Consensus 305 ~i~Rp~~i~ 313 (545)
+.++||.|.
T Consensus 216 ~~v~PG~v~ 224 (314)
T TIGR01289 216 ASLYPGCIA 224 (314)
T ss_pred EEecCCccc
Confidence 999999884
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-09 Score=101.71 Aligned_cols=188 Identities=18% Similarity=0.145 Sum_probs=118.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC---CCccc-CCCCCCCCCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC---STSKE-SAQAPDLGLS 173 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~---~~~~~-Dl~~~~lgl~ 173 (545)
|+++||||++.||.+++++|.+ |. +|++..|+.. ++++... .++... ..++. |+++
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~---~Vil~~r~~~------~~~~~~~----~l~~~~~~~~~~~~~Dv~d------ 60 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE---DVVLAARRPE------AAQGLAS----DLRQRGATSVHVLSFDAQD------ 60 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC---EEEEEeCCHH------HHHHHHH----HHHhccCCceEEEEcccCC------
Confidence 5799999999999999999984 54 6888888642 2222211 111111 22344 8874
Q ss_pred HHHHHHHh-------cCccEEEEccccccch-------HHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRFD-------EELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~~-------~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v 235 (545)
.++++.++ ..+|++||+||..... +.......+|+.+...+++.+ .+.+.-.++|++||...
T Consensus 61 ~~~v~~~~~~~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~ 140 (246)
T PRK05599 61 LDTHRELVKQTQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAG 140 (246)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 33443332 3689999999975321 123445678888877666544 22211358999999865
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..+.+.+..+ .+++++.+.||
T Consensus 141 ~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG 181 (246)
T PRK05599 141 WRAR---------------------------------------RANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPG 181 (246)
T ss_pred ccCC---------------------------------------cCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCC
Confidence 4221 111579999998888877654 67899999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
.|..+... +..+ . .. ....+++|++++.++....
T Consensus 182 ~v~T~~~~---------------------~~~~------~-~~-~~~pe~~a~~~~~~~~~~~ 215 (246)
T PRK05599 182 FVIGSMTT---------------------GMKP------A-PM-SVYPRDVAAAVVSAITSSK 215 (246)
T ss_pred cccchhhc---------------------CCCC------C-CC-CCCHHHHHHHHHHHHhcCC
Confidence 88553110 0000 0 00 2567999999999887643
|
|
| >KOG1203|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.7e-10 Score=110.74 Aligned_cols=213 Identities=17% Similarity=0.159 Sum_probs=124.4
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLS 173 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~ 173 (545)
..+..+|||+||||.+|+.+++.|++.|+ .|.+++|+........++ .. ... ... |++.+... .
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf---~vra~VRd~~~a~~~~~~--~~----~d~---~~~---~v~~~~~~-~ 139 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGF---SVRALVRDEQKAEDLLGV--FF----VDL---GLQ---NVEADVVT-A 139 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCC---eeeeeccChhhhhhhhcc--cc----ccc---ccc---eeeecccc-c
Confidence 34568999999999999999999999975 799999986432211110 00 000 001 22221110 1
Q ss_pred HHHHHHHhc----CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCC
Q psy16252 174 PDDKRLVTS----KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKA 249 (545)
Q Consensus 174 ~~~~~~l~~----~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~ 249 (545)
.+....+.+ ...+++-|++-..-.+....-+.+...|+.|++++|+.+ ++++|+++|++...-...+ +.
T Consensus 140 ~d~~~~~~~~~~~~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~a-Gvk~~vlv~si~~~~~~~~------~~ 212 (411)
T KOG1203|consen 140 IDILKKLVEAVPKGVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKA-GVKRVVLVGSIGGTKFNQP------PN 212 (411)
T ss_pred cchhhhhhhhccccceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHh-CCceEEEEEeecCcccCCC------ch
Confidence 122333333 344666666544322211122467889999999999998 9999999999876533210 00
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccc
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYG 329 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~ 329 (545)
. + .....+-.+|..+|+.+.+ .+++++|+||+...-.......
T Consensus 213 ~-------------------------~--~~~~~~~~~k~~~e~~~~~--Sgl~ytiIR~g~~~~~~~~~~~-------- 255 (411)
T KOG1203|consen 213 I-------------------------L--LLNGLVLKAKLKAEKFLQD--SGLPYTIIRPGGLEQDTGGQRE-------- 255 (411)
T ss_pred h-------------------------h--hhhhhhhHHHHhHHHHHHh--cCCCcEEEeccccccCCCCcce--------
Confidence 0 0 0002455889999999987 7999999999875443211000
Q ss_pred hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 330 PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
.. ....... ...+..--.++-.++|+.++.++.+...
T Consensus 256 -~~------~~~~~~~-~~~~~~~~~i~r~~vael~~~all~~~~ 292 (411)
T KOG1203|consen 256 -VV------VDDEKEL-LTVDGGAYSISRLDVAELVAKALLNEAA 292 (411)
T ss_pred -ec------ccCcccc-ccccccceeeehhhHHHHHHHHHhhhhh
Confidence 00 0000000 0111112467888999999998887765
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=107.82 Aligned_cols=172 Identities=13% Similarity=0.134 Sum_probs=110.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCC----HHHHHHhhHHHHHHhhhhc--CCCccc-CCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS----PQQRIDKMLDTVAISLKFT--CSTSKE-SAQA 167 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~----~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~ 167 (545)
+++|+++||||++.||.++++.|++.|. +|++..|+..... ..+++..... .+... ....+. |++
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~---~Vv~~~r~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~Dv~- 77 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA---TVYVTGRSTRARRSEYDRPETIEETAE----LVTAAGGRGIAVQVDHL- 77 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecccccccccccccchHHHHHH----HHHhcCCceEEEEcCCC-
Confidence 4689999999999999999999999865 6888888743210 0112222111 11111 122333 887
Q ss_pred CCCCCCHHHHHHHh-------cCccEEEEcc-ccc-------cc----hHHHHHHHHHhHHHHHHHHHHHHHc---cCCc
Q psy16252 168 PDLGLSPDDKRLVT-------SKVNLVFHCA-ATL-------RF----DEELKEAIRTNMCATQTMLDLAKQC---KNLK 225 (545)
Q Consensus 168 ~~lgl~~~~~~~l~-------~~vd~Vih~A-a~~-------~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~ 225 (545)
+.++++.++ ..+|++|||| +.. .+ .+.+...+++|+.++..+++++... .+-.
T Consensus 78 -----~~~~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g 152 (305)
T PRK08303 78 -----VPEQVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGG 152 (305)
T ss_pred -----CHHHHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCc
Confidence 445555444 3689999999 631 11 1345667889999988888776542 1225
Q ss_pred eEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----c
Q psy16252 226 MFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----Q 300 (545)
Q Consensus 226 ~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~ 300 (545)
++|++||......... ......|+.||.....+.+..+ .
T Consensus 153 ~IV~isS~~~~~~~~~------------------------------------~~~~~~Y~asKaal~~lt~~La~el~~~ 196 (305)
T PRK08303 153 LVVEITDGTAEYNATH------------------------------------YRLSVFYDLAKTSVNRLAFSLAHELAPH 196 (305)
T ss_pred EEEEECCccccccCcC------------------------------------CCCcchhHHHHHHHHHHHHHHHHHhhhc
Confidence 8999998643211000 0011469999999988887654 5
Q ss_pred CCCEEEEccceeecc
Q psy16252 301 FFPVCIFRPSIVIST 315 (545)
Q Consensus 301 ~l~~~i~Rp~~i~g~ 315 (545)
++++..+.||.|-.+
T Consensus 197 gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 197 GATAVALTPGWLRSE 211 (305)
T ss_pred CcEEEEecCCccccH
Confidence 799999999987443
|
|
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-09 Score=91.28 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=132.7
Q ss_pred hhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCcccCCCCC
Q psy16252 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKESAQAP 168 (545)
Q Consensus 91 ~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~Dl~~~ 168 (545)
..+....+.++||||+..||++++..|.+.|. +|.+..+..... ++-. ..+.. .+..|-.|++++
T Consensus 8 ~~~r~~sk~~~vtGg~sGIGrAia~~la~~Ga---rv~v~dl~~~~A--~ata--------~~L~g~~~h~aF~~DVS~a 74 (256)
T KOG1200|consen 8 VVQRLMSKVAAVTGGSSGIGRAIAQLLAKKGA---RVAVADLDSAAA--EATA--------GDLGGYGDHSAFSCDVSKA 74 (256)
T ss_pred HHHHHhcceeEEecCCchHHHHHHHHHHhcCc---EEEEeecchhhH--HHHH--------hhcCCCCccceeeeccCcH
Confidence 33445678999999999999999999999876 455544443322 1111 11111 111122288755
Q ss_pred CCCCC-HHHHHHHhcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-----cCCceEEEEecccc
Q psy16252 169 DLGLS-PDDKRLVTSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-----KNLKMFTYVSTAFS 235 (545)
Q Consensus 169 ~lgl~-~~~~~~l~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-----~~~~~~v~vSS~~v 235 (545)
+---. .+++.+-+..++++++|||..+. .+.|++.+.+|+.|+....+++.+. .+.-++|.+||+-.
T Consensus 75 ~~v~~~l~e~~k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVG 154 (256)
T KOG1200|consen 75 HDVQNTLEEMEKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVG 154 (256)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhc
Confidence 31000 12222333478999999998752 4678999999999999988887653 12338999999833
Q ss_pred -ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHH--------HHHHHHHHHHhccCCCEEE
Q psy16252 236 -NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLT--------KAAAEQLLCEEAQFFPVCI 306 (545)
Q Consensus 236 -~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s--------K~~aE~~~~~~~~~l~~~i 306 (545)
.|+.+ ...|+.| |..|..+.+ .++++.+
T Consensus 155 kiGN~G----------------------------------------QtnYAAsK~GvIgftktaArEla~---knIrvN~ 191 (256)
T KOG1200|consen 155 KIGNFG----------------------------------------QTNYAASKGGVIGFTKTAARELAR---KNIRVNV 191 (256)
T ss_pred cccccc----------------------------------------chhhhhhcCceeeeeHHHHHHHhh---cCceEeE
Confidence 22211 1345554 455544444 5899999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
+-||+|-.|-....| ..+...+...++. -.+-..++||+.++.++..... ...+..+
T Consensus 192 VlPGFI~tpMT~~mp---------~~v~~ki~~~iPm---------gr~G~~EevA~~V~fLAS~~ss-----YiTG~t~ 248 (256)
T KOG1200|consen 192 VLPGFIATPMTEAMP---------PKVLDKILGMIPM---------GRLGEAEEVANLVLFLASDASS-----YITGTTL 248 (256)
T ss_pred eccccccChhhhhcC---------HHHHHHHHccCCc---------cccCCHHHHHHHHHHHhccccc-----cccceeE
Confidence 999999776443322 3344444332221 1233467899998887743322 2335566
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
.++++
T Consensus 249 evtGG 253 (256)
T KOG1200|consen 249 EVTGG 253 (256)
T ss_pred EEecc
Confidence 66554
|
|
| >KOG1208|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.1e-09 Score=101.54 Aligned_cols=178 Identities=18% Similarity=0.172 Sum_probs=114.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC-CCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK-NQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~-~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+.+++++|||||..||.+++++|..+| .+|+...|+.. ...+.+.+.. ......+.+.+ |++
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~G---a~Vv~~~R~~~~~~~~~~~i~~-------~~~~~~i~~~~lDLs------ 96 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRG---AHVVLACRNEERGEEAKEQIQK-------GKANQKIRVIQLDLS------ 96 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHHHHh-------cCCCCceEEEECCCC------
Confidence 457999999999999999999999986 48999999852 1111111111 11111222334 777
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-----hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEeccccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-----DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v~ 236 (545)
+.+++....+ ..|+.|++||.... .+.++..+.+|..|...|.++. +.. ...|+|++||...
T Consensus 97 sl~SV~~fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s-~~~RIV~vsS~~~- 174 (314)
T KOG1208|consen 97 SLKSVRKFAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRS-APSRIVNVSSILG- 174 (314)
T ss_pred CHHHHHHHHHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhC-CCCCEEEEcCccc-
Confidence 5555555543 67999999998632 2456888999999977766554 444 3379999999875
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEcccee
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIV 312 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i 312 (545)
+.....+ + ++.+..... .....|+.||..-.....+.. .|+.+..+.||.|
T Consensus 175 ~~~~~~~-~------------------l~~~~~~~~------~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v 229 (314)
T KOG1208|consen 175 GGKIDLK-D------------------LSGEKAKLY------SSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVV 229 (314)
T ss_pred cCccchh-h------------------ccchhccCc------cchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcc
Confidence 1110000 0 111000000 011359999998877777765 4788999999998
Q ss_pred ecc
Q psy16252 313 IST 315 (545)
Q Consensus 313 ~g~ 315 (545)
.+.
T Consensus 230 ~t~ 232 (314)
T KOG1208|consen 230 KTT 232 (314)
T ss_pred ccc
Confidence 775
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-08 Score=92.83 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=107.4
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC-CCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCCCCH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK-KNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lgl~~ 174 (545)
+++|||++|.||..+++.|.+++ ..+|+++.|+. ......+.+.+ ++.. .+.++. |++ ++
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~--------l~~~g~~v~~~~~Dv~------d~ 65 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIRE--------LESAGARVEYVQCDVT------DP 65 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHH--------HHHTT-EEEEEE--TT------SH
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHH--------HHhCCCceeeeccCcc------CH
Confidence 68999999999999999999985 46899999983 33333333332 2222 233444 888 67
Q ss_pred HHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccc-cCC
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSN-SYR 239 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~-~~~ 239 (545)
+++.++++ .++.|||+|+.... .+.+...+...+.|+.+|.++.... .+..||.+||+... |..
T Consensus 66 ~~v~~~~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~-~l~~~i~~SSis~~~G~~ 144 (181)
T PF08659_consen 66 EAVAAALAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENR-PLDFFILFSSISSLLGGP 144 (181)
T ss_dssp HHHHHHHHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTT-TTSEEEEEEEHHHHTT-T
T ss_pred HHHHHHHHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcC-CCCeEEEECChhHhccCc
Confidence 77877764 46899999998531 2445777888999999999999885 88999999999753 322
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccce
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSI 311 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~ 311 (545)
+ ...|+..-...+.+..... .+.|++.+.-|.
T Consensus 145 g----------------------------------------q~~YaaAN~~lda~a~~~~~~g~~~~sI~wg~ 177 (181)
T PF08659_consen 145 G----------------------------------------QSAYAAANAFLDALARQRRSRGLPAVSINWGA 177 (181)
T ss_dssp T----------------------------------------BHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-E
T ss_pred c----------------------------------------hHhHHHHHHHHHHHHHHHHhCCCCEEEEEccc
Confidence 1 1579988888888887666 788888877554
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.6e-09 Score=104.12 Aligned_cols=118 Identities=17% Similarity=0.125 Sum_probs=77.3
Q ss_pred EEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCCCHHHH
Q psy16252 101 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGLSPDDK 177 (545)
Q Consensus 101 lITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl~~~~~ 177 (545)
+||||++.||.+++++|+++|. .+|++..|+.. +...... .+.. ....++. |++ +.+++
T Consensus 1 lITGas~GIG~aia~~l~~~G~--~~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~Dl~------d~~~v 62 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGK--WHVVMACRDFL------KAERAAK----SAGMPKDSYTVMHLDLA------SLDSV 62 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCC--CEEEEEeCCHH------HHHHHHH----HhcCCCCeEEEEEecCC------CHHHH
Confidence 5999999999999999999871 26787777632 1111111 1111 1122333 887 44555
Q ss_pred HHHh-------cCccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc---cC--CceEEEEeccccc
Q psy16252 178 RLVT-------SKVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC---KN--LKMFTYVSTAFSN 236 (545)
Q Consensus 178 ~~l~-------~~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~--~~~~v~vSS~~v~ 236 (545)
+.++ ..+|++|||||.... .+.++..+++|+.|+..+++.+... .+ ..++|++||...+
T Consensus 63 ~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~ 141 (308)
T PLN00015 63 RQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGN 141 (308)
T ss_pred HHHHHHHHhcCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccc
Confidence 4443 358999999997421 2456788999999988887665431 12 3689999998654
|
|
| >KOG0725|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-08 Score=97.20 Aligned_cols=175 Identities=16% Similarity=0.131 Sum_probs=112.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHH-hhhhcCCCccc-CCCCCCC--
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAI-SLKFTCSTSKE-SAQAPDL-- 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~-~~~~~~~~~~~-Dl~~~~l-- 170 (545)
+.+|+++||||+..||++++++|.+.|. +|+...|... +++.....+-. .....+...+. |++...-
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga---~v~i~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~ 76 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA---KVVITGRSEE------RLEETAQELGGLGYTGGKVLAIVCDVSKEVDVE 76 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHH
Confidence 5689999999999999999999999865 6777777643 22221111000 00001111222 7773210
Q ss_pred CCCHHHHHHHhcCccEEEEccccccc--------hHHHHHHHHHhHHH-HHHHHHHHHHc---cCCceEEEEeccccccC
Q psy16252 171 GLSPDDKRLVTSKVNLVFHCAATLRF--------DEELKEAIRTNMCA-TQTMLDLAKQC---KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 171 gl~~~~~~~l~~~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~g-t~~ll~~a~~~---~~~~~~v~vSS~~v~~~ 238 (545)
.+-.....+.+.++|+++++||.... .+.++..+++|+.| +..+.+.|..+ .+-..++++||......
T Consensus 77 ~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~ 156 (270)
T KOG0725|consen 77 KLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGP 156 (270)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccC
Confidence 00011122223469999999998642 25678889999995 66666665542 13357888888865533
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
.. ..+..|+.||...+++.+..+ .++++..+-||.|.
T Consensus 157 ~~--------------------------------------~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~ 198 (270)
T KOG0725|consen 157 GP--------------------------------------GSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVK 198 (270)
T ss_pred CC--------------------------------------CCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEe
Confidence 11 111479999999999998876 68999999999998
Q ss_pred ccC
Q psy16252 314 STW 316 (545)
Q Consensus 314 g~~ 316 (545)
.+.
T Consensus 199 T~~ 201 (270)
T KOG0725|consen 199 TSL 201 (270)
T ss_pred CCc
Confidence 864
|
|
| >KOG1611|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-08 Score=89.20 Aligned_cols=204 Identities=15% Similarity=0.127 Sum_probs=125.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.+.|+||||+-.||--|+++|++. .++..++...|+.... .+.++.. .....++.+++ |++ +.+
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~-~~i~~iiat~r~~e~a--~~~l~~k------~~~d~rvHii~Ldvt------~de 67 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKD-KGIEVIIATARDPEKA--ATELALK------SKSDSRVHIIQLDVT------CDE 67 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcC-CCcEEEEEecCChHHh--hHHHHHh------hccCCceEEEEEecc------cHH
Confidence 467999999999999999999986 5666666666654322 1111110 11234556666 887 334
Q ss_pred HHHHHh---------cCccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHH----HHcc----------CC
Q psy16252 176 DKRLVT---------SKVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLA----KQCK----------NL 224 (545)
Q Consensus 176 ~~~~l~---------~~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a----~~~~----------~~ 224 (545)
++..+. ++++++|++||.... ...+-..+++|+.|+..+.+.+ +++. ..
T Consensus 68 S~~~~~~~V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~r 147 (249)
T KOG1611|consen 68 SIDNFVQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSR 147 (249)
T ss_pred HHHHHHHHHHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccc
Confidence 444443 367999999998521 2345677899999977765543 3321 12
Q ss_pred ceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----
Q psy16252 225 KMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----- 299 (545)
Q Consensus 225 ~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----- 299 (545)
..+|++||....-... .+ .....|..||...-.+.++..
T Consensus 148 aaIinisS~~~s~~~~------~~------------------------------~~~~AYrmSKaAlN~f~ksls~dL~~ 191 (249)
T KOG1611|consen 148 AAIINISSSAGSIGGF------RP------------------------------GGLSAYRMSKAALNMFAKSLSVDLKD 191 (249)
T ss_pred eeEEEeeccccccCCC------CC------------------------------cchhhhHhhHHHHHHHHHHhhhhhcC
Confidence 3789898886542211 00 111689999999988888876
Q ss_pred cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCC
Q psy16252 300 QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKD 379 (545)
Q Consensus 300 ~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~ 379 (545)
.++-++-+.||.|-.. . |. .-..+.|++-+..+++...+...
T Consensus 192 ~~ilv~sihPGwV~TD------------M-----------gg----------~~a~ltveeSts~l~~~i~kL~~----- 233 (249)
T KOG1611|consen 192 DHILVVSIHPGWVQTD------------M-----------GG----------KKAALTVEESTSKLLASINKLKN----- 233 (249)
T ss_pred CcEEEEEecCCeEEcC------------C-----------CC----------CCcccchhhhHHHHHHHHHhcCc-----
Confidence 3444555666665332 1 00 22346677777777777766543
Q ss_pred CCCCCEEEee
Q psy16252 380 PSCLPIYNYV 389 (545)
Q Consensus 380 ~~~~~vy~i~ 389 (545)
.+.|..||..
T Consensus 234 ~hnG~ffn~d 243 (249)
T KOG1611|consen 234 EHNGGFFNRD 243 (249)
T ss_pred ccCcceEccC
Confidence 2346666654
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6e-08 Score=84.59 Aligned_cols=196 Identities=15% Similarity=0.085 Sum_probs=125.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|.|.||||-+|+.++++.+++|| .|.+++|++....+.+ ...+++ |+. +++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH---eVTAivRn~~K~~~~~----------------~~~i~q~Dif------d~~~ 55 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH---EVTAIVRNASKLAARQ----------------GVTILQKDIF------DLTS 55 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC---eeEEEEeChHhccccc----------------cceeeccccc------Chhh
Confidence 6899999999999999999999988 6899999876543322 122222 666 5566
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCccccc--ccCCCCCHH
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEI--IYKAHTHYS 254 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~--~~~~~~~~~ 254 (545)
+.+.+.+.|+||..-+...... ... .......|++..+.+ ++.|++.|..+++.-- +|. ....
T Consensus 56 ~a~~l~g~DaVIsA~~~~~~~~-~~~----~~k~~~~li~~l~~a-gv~RllVVGGAGSL~i----d~g~rLvD~----- 120 (211)
T COG2910 56 LASDLAGHDAVISAFGAGASDN-DEL----HSKSIEALIEALKGA-GVPRLLVVGGAGSLEI----DEGTRLVDT----- 120 (211)
T ss_pred hHhhhcCCceEEEeccCCCCCh-hHH----HHHHHHHHHHHHhhc-CCeeEEEEcCccceEE----cCCceeecC-----
Confidence 7788899999998755432111 111 123366788888886 8899999988765321 111 0001
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCC-chHHHHHHHHHHHH--HHhccCCCEEEEccceeeccCCCCCCCCccCccchH
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENM-NTYTLTKAAAEQLL--CEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPT 331 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~aE~~~--~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~ 331 (545)
..+| ..|...+..+|.+- +.. ..+.++.+-|+..+-|++. +| -+
T Consensus 121 -----------------------p~fP~ey~~~A~~~ae~L~~Lr~~-~~l~WTfvSPaa~f~PGer--Tg----~y--- 167 (211)
T COG2910 121 -----------------------PDFPAEYKPEALAQAEFLDSLRAE-KSLDWTFVSPAAFFEPGER--TG----NY--- 167 (211)
T ss_pred -----------------------CCCchhHHHHHHHHHHHHHHHhhc-cCcceEEeCcHHhcCCccc--cC----ce---
Confidence 1223 34667788888443 333 4699999999999887432 11 11
Q ss_pred HHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 332 GLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 332 ~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
..|.-. +..+ ..--+.|...|-|-+++.-+.++..
T Consensus 168 ------rlggD~-ll~n-~~G~SrIS~aDYAiA~lDe~E~~~h 202 (211)
T COG2910 168 ------RLGGDQ-LLVN-AKGESRISYADYAIAVLDELEKPQH 202 (211)
T ss_pred ------Eeccce-EEEc-CCCceeeeHHHHHHHHHHHHhcccc
Confidence 011111 1112 2334678889999999999888765
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=97.36 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=107.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
..+++|+||||++.||..+++.|++.|. .|++..|..... ..+.+.... . .. ....+.. |++.
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~---~v~~~~~~~~~~-~~~~~~~~~----~--~~~~~~~~~~~~Dvs~---- 68 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGA---RVVVAARRSEEE-AAEALAAAI----K--EAGGGRAAAVAADVSD---- 68 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---eEEEEcCCCchh-hHHHHHHHH----H--hcCCCcEEEEEecCCC----
Confidence 3579999999999999999999998765 566666654321 111111110 0 00 0112222 7773
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHccCCc--eEEEEeccc
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQCKNLK--MFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~--~~v~vSS~~ 234 (545)
..+....++ .++|++||+||.... .+.++..+++|+.|...+.+++.. ..+ ++|++||..
T Consensus 69 -~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~--~~~~~~Iv~isS~~ 145 (251)
T COG1028 69 -DEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALP--LMKKQRIVNISSVA 145 (251)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHH--hhhhCeEEEECCch
Confidence 133333333 358999999997431 256788899999999998884443 223 899999997
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
.. ..... ...|+.||+..+.+...++ .|+.+..+-|
T Consensus 146 ~~-~~~~~--------------------------------------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~P 186 (251)
T COG1028 146 GL-GGPPG--------------------------------------QAAYAASKAALIGLTKALALELAPRGIRVNAVAP 186 (251)
T ss_pred hc-CCCCC--------------------------------------cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEe
Confidence 65 32100 1579999999888877665 5799999999
Q ss_pred ceee
Q psy16252 310 SIVI 313 (545)
Q Consensus 310 ~~i~ 313 (545)
|.+-
T Consensus 187 G~~~ 190 (251)
T COG1028 187 GYID 190 (251)
T ss_pred ccCC
Confidence 9554
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-08 Score=98.21 Aligned_cols=231 Identities=15% Similarity=0.006 Sum_probs=131.8
Q ss_pred hcCcEEEEecc--ccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHh---hhhc----CCCccc-
Q psy16252 95 YEGAEILMTGA--TGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAIS---LKFT----CSTSKE- 163 (545)
Q Consensus 95 ~~~~~VlITGa--tGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~---~~~~----~~~~~~- 163 (545)
++||+++|||| +..||.++++.|.+.|. +|++ .|.... .+.+...... -+.. .... ....+.
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga---~Vv~-~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGA---EILV-GTWVPA---LNIFETSLRRGKFDESRKLPDGSLMEITKVYPL 79 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCC---EEEE-EeCcch---hhHHHHhhhccccchhhhcccccccCcCeeeec
Confidence 67999999999 89999999999999875 5665 554321 1222111110 0000 0000 012223
Q ss_pred CC--CCCC-C-----------CCCHHHHHHHhc-------CccEEEEcccccc-----c----hHHHHHHHHHhHHHHHH
Q psy16252 164 SA--QAPD-L-----------GLSPDDKRLVTS-------KVNLVFHCAATLR-----F----DEELKEAIRTNMCATQT 213 (545)
Q Consensus 164 Dl--~~~~-l-----------gl~~~~~~~l~~-------~vd~Vih~Aa~~~-----~----~~~~~~~~~~Nv~gt~~ 213 (545)
|+ +.++ + +-+.++++.+++ .+|++|||||... + .+.++..+++|+.++..
T Consensus 80 D~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~ 159 (303)
T PLN02730 80 DAVFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVS 159 (303)
T ss_pred ceecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHH
Confidence 66 2221 0 011234444433 5899999996421 1 25678889999999999
Q ss_pred HHHHHHHc-cCCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHH
Q psy16252 214 MLDLAKQC-KNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAE 292 (545)
Q Consensus 214 ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE 292 (545)
+++.+... ..-.++|++||..+..... .+...|+.||+..+
T Consensus 160 l~~~~~p~m~~~G~II~isS~a~~~~~p--------------------------------------~~~~~Y~asKaAl~ 201 (303)
T PLN02730 160 LLQHFGPIMNPGGASISLTYIASERIIP--------------------------------------GYGGGMSSAKAALE 201 (303)
T ss_pred HHHHHHHHHhcCCEEEEEechhhcCCCC--------------------------------------CCchhhHHHHHHHH
Confidence 98877652 1125899999986532110 01136999999999
Q ss_pred HHHHHhc------cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHH
Q psy16252 293 QLLCEEA------QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALI 366 (545)
Q Consensus 293 ~~~~~~~------~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~ 366 (545)
.+.+..+ .++++..+-||.|-.+.....+ ............ . + ...+...+|++.+++
T Consensus 202 ~l~~~la~El~~~~gIrVn~V~PG~v~T~~~~~~~-------~~~~~~~~~~~~----~---p--l~r~~~peevA~~~~ 265 (303)
T PLN02730 202 SDTRVLAFEAGRKYKIRVNTISAGPLGSRAAKAIG-------FIDDMIEYSYAN----A---P--LQKELTADEVGNAAA 265 (303)
T ss_pred HHHHHHHHHhCcCCCeEEEEEeeCCccCchhhccc-------ccHHHHHHHHhc----C---C--CCCCcCHHHHHHHHH
Confidence 8887765 2689999999988654221100 001111111110 0 1 012456799999999
Q ss_pred hcccccccccCCCCCCCCEEEeecC
Q psy16252 367 CAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++..... ...+.++.+.++
T Consensus 266 fLaS~~a~-----~itG~~l~vdGG 285 (303)
T PLN02730 266 FLASPLAS-----AITGATIYVDNG 285 (303)
T ss_pred HHhCcccc-----CccCCEEEECCC
Confidence 88764332 123556665544
|
|
| >KOG4169|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.5e-09 Score=95.42 Aligned_cols=217 Identities=13% Similarity=0.138 Sum_probs=132.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||++++||+.|.||.++..+|+.. +++.+..+.|-++ ..+-..|+++.. ...+-|++ |++ +
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~k--gik~~~i~~~~En-~~a~akL~ai~p-------~~~v~F~~~DVt------~ 66 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEK--GIKVLVIDDSEEN-PEAIAKLQAINP-------SVSVIFIKCDVT------N 66 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHc--CchheeehhhhhC-HHHHHHHhccCC-------CceEEEEEeccc------c
Confidence 45899999999999999999999998 4555555555433 122222222111 11223444 888 3
Q ss_pred HHHHHHHhc-------CccEEEEccccccchHHHHHHHHHhHHHHHHH----HHHHHHc--cCCceEEEEeccccccCCC
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRFDEELKEAIRTNMCATQTM----LDLAKQC--KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~l----l~~a~~~--~~~~~~v~vSS~~v~~~~~ 240 (545)
..+++++++ .+|++||.||..+ +.+++..+.+|..|..+- +....+. +.-.-+|.+||.+...+
T Consensus 67 ~~~~~~~f~ki~~~fg~iDIlINgAGi~~-dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P-- 143 (261)
T KOG4169|consen 67 RGDLEAAFDKILATFGTIDILINGAGILD-DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDP-- 143 (261)
T ss_pred HHHHHHHHHHHHHHhCceEEEEccccccc-chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCc--
Confidence 445555543 6799999999876 566888999999875554 4444332 12346899999876432
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEEccceee
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIFRPSIVI 313 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~Rp~~i~ 313 (545)
.|.. ..|+.||+-.=.+.++++ .|+++..+.||.+-
T Consensus 144 --------~p~~-----------------------------pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~ 186 (261)
T KOG4169|consen 144 --------MPVF-----------------------------PVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTR 186 (261)
T ss_pred --------cccc-----------------------------hhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcch
Confidence 2211 358888875443333321 69999999999874
Q ss_pred ccCCCCC---CCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 314 STWKEPI---PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 314 g~~~~~~---~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
..--+.+ .+|.+- ...+..... ....-+..+|+..++.+++.+.+ +.+|-+..
T Consensus 187 t~l~~~~~~~~~~~e~----~~~~~~~l~------------~~~~q~~~~~a~~~v~aiE~~~N--------Gaiw~v~~ 242 (261)
T KOG4169|consen 187 TDLAENIDASGGYLEY----SDSIKEALE------------RAPKQSPACCAINIVNAIEYPKN--------GAIWKVDS 242 (261)
T ss_pred HHHHHHHHhcCCcccc----cHHHHHHHH------------HcccCCHHHHHHHHHHHHhhccC--------CcEEEEec
Confidence 4311111 111111 111111111 11234556788999999888665 78998887
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 243 g 243 (261)
T KOG4169|consen 243 G 243 (261)
T ss_pred C
Confidence 6
|
|
| >KOG1610|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-08 Score=94.75 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=109.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
..+|.|||||.-..+|..|+.+|.+.|+ .|++-.-.+.+. +.+.... ++.+..-+. |++ +
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf---~V~Agcl~~~ga---e~L~~~~-------~s~rl~t~~LDVT------~ 87 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGF---RVFAGCLTEEGA---ESLRGET-------KSPRLRTLQLDVT------K 87 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCC---EEEEEeecCchH---HHHhhhh-------cCCcceeEeeccC------C
Confidence 4579999999999999999999999987 567666333322 2222111 112222233 898 4
Q ss_pred HHHHHHHhc---------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHH----HHHHHHccCCceEEEEec
Q psy16252 174 PDDKRLVTS---------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTM----LDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 174 ~~~~~~l~~---------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~l----l~~a~~~~~~~~~v~vSS 232 (545)
+++++++.+ +.-.||||||...+ .+.+....++|..|+..+ +.+.++++ .|+|++||
T Consensus 88 ~esi~~a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar--GRvVnvsS 165 (322)
T KOG1610|consen 88 PESVKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR--GRVVNVSS 165 (322)
T ss_pred HHHHHHHHHHHHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc--CeEEEecc
Confidence 566666654 45789999996421 366788899999996665 45566654 59999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
...--.. +...+|..||+..|....... .|+.+.|+
T Consensus 166 ~~GR~~~---------------------------------------p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~Vsii 206 (322)
T KOG1610|consen 166 VLGRVAL---------------------------------------PALGPYCVSKFAVEAFSDSLRRELRPFGVKVSII 206 (322)
T ss_pred cccCccC---------------------------------------cccccchhhHHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 8652111 122689999999988775543 79999999
Q ss_pred cccee
Q psy16252 308 RPSIV 312 (545)
Q Consensus 308 Rp~~i 312 (545)
-||+.
T Consensus 207 ePG~f 211 (322)
T KOG1610|consen 207 EPGFF 211 (322)
T ss_pred ccCcc
Confidence 99953
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=83.81 Aligned_cols=159 Identities=20% Similarity=0.238 Sum_probs=105.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc---CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE---SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~---Dl~~~~lg 171 (545)
+.|.+||||||+..||..|++++++.|. +|+.-.|+ ++||.+.... .+.+.. |+.
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN---~VIi~gR~------e~~L~e~~~~--------~p~~~t~v~Dv~----- 60 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGN---TVIICGRN------EERLAEAKAE--------NPEIHTEVCDVA----- 60 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCC---EEEEecCc------HHHHHHHHhc--------Ccchheeeeccc-----
Confidence 3578999999999999999999999975 56666665 4566554332 343333 776
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc---ch------HHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEec
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR---FD------EELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~---~~------~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS 232 (545)
|.+..+++++ ..+++|||||..+ +. +..++-+.+|..++..|..+.... ..-..+|.|||
T Consensus 61 -d~~~~~~lvewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSS 139 (245)
T COG3967 61 -DRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSS 139 (245)
T ss_pred -chhhHHHHHHHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEecc
Confidence 4444444443 5799999999853 21 223556789999999988776542 11357899999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
.-++-+.. ..-.|..||+..-..-...+ .++.+.=+
T Consensus 140 GLafvPm~---------------------------------------~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~ 180 (245)
T COG3967 140 GLAFVPMA---------------------------------------STPVYCATKAAIHSYTLALREQLKDTSVEVIEL 180 (245)
T ss_pred ccccCccc---------------------------------------ccccchhhHHHHHHHHHHHHHHhhhcceEEEEe
Confidence 86553321 01358888886654443332 46777778
Q ss_pred ccceeecc
Q psy16252 308 RPSIVIST 315 (545)
Q Consensus 308 Rp~~i~g~ 315 (545)
-|+.|-.+
T Consensus 181 ~PP~V~t~ 188 (245)
T COG3967 181 APPLVDTT 188 (245)
T ss_pred cCCceecC
Confidence 88888664
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.9e-08 Score=91.58 Aligned_cols=210 Identities=13% Similarity=0.122 Sum_probs=133.5
Q ss_pred ccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHHHHH
Q psy16252 104 GAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDKRLV 180 (545)
Q Consensus 104 Gat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~~~l 180 (545)
|++ +.||.++++.|++.|. +|++..|+.. .+...+..+..... .+++. |++ ++++++.+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga---~V~~~~~~~~------~~~~~~~~l~~~~~---~~~~~~D~~------~~~~v~~~ 62 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGA---NVILTDRNEE------KLADALEELAKEYG---AEVIQCDLS------DEESVEAL 62 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTE---EEEEEESSHH------HHHHHHHHHHHHTT---SEEEESCTT------SHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHCCC---EEEEEeCChH------HHHHHHHHHHHHcC---CceEeecCc------chHHHHHH
Confidence 566 9999999999999875 7888888753 21121111222221 22344 887 55555555
Q ss_pred -------h-cCccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCC
Q psy16252 181 -------T-SKVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 181 -------~-~~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~ 240 (545)
+ ..+|++||+++.... .+.+...+++|+.+...+++.+... ..-.++|++||.......
T Consensus 63 ~~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~- 141 (241)
T PF13561_consen 63 FDEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPM- 141 (241)
T ss_dssp HHHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBS-
T ss_pred HHHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccC-
Confidence 3 578999999987542 2456778899999999998887542 122689999998654321
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----c--CCCEEEEccceeec
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----Q--FFPVCIFRPSIVIS 314 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~--~l~~~i~Rp~~i~g 314 (545)
.....|+.+|+..+.+++.++ + |+++..|.||.|..
T Consensus 142 --------------------------------------~~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t 183 (241)
T PF13561_consen 142 --------------------------------------PGYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIET 183 (241)
T ss_dssp --------------------------------------TTTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSS
T ss_pred --------------------------------------ccchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceec
Confidence 111589999999999998875 5 89999999998865
Q ss_pred cCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 315 TWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+.... ......+....... ...-.+...+|||++++.++..... .-.+++..+.++
T Consensus 184 ~~~~~-------~~~~~~~~~~~~~~---------~pl~r~~~~~evA~~v~fL~s~~a~-----~itG~~i~vDGG 239 (241)
T PF13561_consen 184 PMTER-------IPGNEEFLEELKKR---------IPLGRLGTPEEVANAVLFLASDAAS-----YITGQVIPVDGG 239 (241)
T ss_dssp HHHHH-------HHTHHHHHHHHHHH---------STTSSHBEHHHHHHHHHHHHSGGGT-----TGTSEEEEESTT
T ss_pred cchhc-------cccccchhhhhhhh---------hccCCCcCHHHHHHHHHHHhCcccc-----CccCCeEEECCC
Confidence 42110 00011222222111 1112256899999999988876532 123566666544
|
... |
| >KOG1207|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-08 Score=86.32 Aligned_cols=201 Identities=18% Similarity=0.179 Sum_probs=133.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc----CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE----SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~----Dl~~~~l 170 (545)
+.|+.|++||+.-.||+.++..|.+.|. +|+++.|.+. .+..... +.+..+. |++
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA---~ViAvaR~~a------~L~sLV~--------e~p~~I~Pi~~Dls---- 63 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGA---QVIAVARNEA------NLLSLVK--------ETPSLIIPIVGDLS---- 63 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCC---EEEEEecCHH------HHHHHHh--------hCCcceeeeEeccc----
Confidence 5789999999999999999999999864 7999999742 2322221 1222121 665
Q ss_pred CCCHHHHHHHhc---CccEEEEcccccc---c----hHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEeccccc
Q psy16252 171 GLSPDDKRLVTS---KVNLVFHCAATLR---F----DEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFSN 236 (545)
Q Consensus 171 gl~~~~~~~l~~---~vd~Vih~Aa~~~---~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v~ 236 (545)
+-+.+.+++. -+|-.+++||..- | .++++..+++|+.+..++.+...+. .....+|.+||.++.
T Consensus 64 --~wea~~~~l~~v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~ 141 (245)
T KOG1207|consen 64 --AWEALFKLLVPVFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI 141 (245)
T ss_pred --HHHHHHHhhcccCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc
Confidence 3344444444 4699999999742 2 2455667889999988888874431 123469999998764
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
..- +..+.|..||..-+.+.+..+ ..+++..+.|..
T Consensus 142 R~~---------------------------------------~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTV 182 (245)
T KOG1207|consen 142 RPL---------------------------------------DNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTV 182 (245)
T ss_pred ccc---------------------------------------CCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeE
Confidence 321 112679999999888877665 678999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
|...-. ...|.|..-. -.+ +..+ ..--|.-||.|++|+..++....
T Consensus 183 VmT~MG--~dnWSDP~K~-k~m--------L~ri-----Pl~rFaEV~eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 183 VMTDMG--RDNWSDPDKK-KKM--------LDRI-----PLKRFAEVDEVVNAVLFLLSDNS 228 (245)
T ss_pred EEeccc--ccccCCchhc-cch--------hhhC-----chhhhhHHHHHHhhheeeeecCc
Confidence 987632 2356654320 001 1101 12346789999999998876654
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=115.42 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=116.8
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCC--------HHHHHHhh------------------
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS--------PQQRIDKM------------------ 146 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~--------~~~rl~~~------------------ 146 (545)
.+-+++++|||||+|.||..++++|.+++ ..+|+++.|+..... ....++..
T Consensus 1993 ~l~~g~vvLVTGGarGIG~aiA~~LA~~~--ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~ 2070 (2582)
T TIGR02813 1993 ALNSDDVFLVTGGAKGVTFECALELAKQC--QAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVD 2070 (2582)
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHhc--CCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhh
Confidence 34568999999999999999999999883 137888888731100 00001100
Q ss_pred ------HHH-----HHHhhhhcC--CCccc-CCCCCCCCCCHHHHHHHhc------CccEEEEcccccc-------chHH
Q psy16252 147 ------LDT-----VAISLKFTC--STSKE-SAQAPDLGLSPDDKRLVTS------KVNLVFHCAATLR-------FDEE 199 (545)
Q Consensus 147 ------~~~-----~~~~~~~~~--~~~~~-Dl~~~~lgl~~~~~~~l~~------~vd~Vih~Aa~~~-------~~~~ 199 (545)
... ....++... ..++. |++ |.+.+..+++ .+|.|||+||... ..+.
T Consensus 2071 ~~~~~~~~~~ei~~~la~l~~~G~~v~y~~~DVt------D~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~ 2144 (2582)
T TIGR02813 2071 ALVRPVLSSLEIAQALAAFKAAGASAEYASADVT------NSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEE 2144 (2582)
T ss_pred hcccccchhHHHHHHHHHHHhcCCcEEEEEccCC------CHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHH
Confidence 000 111122111 23444 888 5555555543 5899999999743 2356
Q ss_pred HHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCC
Q psy16252 200 LKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279 (545)
Q Consensus 200 ~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (545)
++..+++|+.|+.++++++... ..++||++||..+.... .
T Consensus 2145 f~~v~~~nv~G~~~Ll~al~~~-~~~~IV~~SSvag~~G~---------------------------------------~ 2184 (2582)
T TIGR02813 2145 FNAVYGTKVDGLLSLLAALNAE-NIKLLALFSSAAGFYGN---------------------------------------T 2184 (2582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEechhhcCCC---------------------------------------C
Confidence 7888999999999999998875 56789999998654221 1
Q ss_pred CCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeecc
Q psy16252 280 NMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVIST 315 (545)
Q Consensus 280 ~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~ 315 (545)
....|+.+|...+.+..... .+.++..+.||.+-+.
T Consensus 2185 gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wdtg 2223 (2582)
T TIGR02813 2185 GQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWDGG 2223 (2582)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeecCC
Confidence 11579999988887776655 5688899999877553
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.4e-08 Score=91.74 Aligned_cols=160 Identities=11% Similarity=0.075 Sum_probs=99.8
Q ss_pred HHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHHHHHhc----CccEE
Q psy16252 113 LIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDKRLVTS----KVNLV 187 (545)
Q Consensus 113 l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~~~l~~----~vd~V 187 (545)
++++|++.|+ +|+++.|+..... +. .++. |++ +.+++..+++ ++|+|
T Consensus 1 ~a~~l~~~G~---~Vv~~~r~~~~~~----~~---------------~~~~~Dl~------~~~~v~~~~~~~~~~iD~l 52 (241)
T PRK12428 1 TARLLRFLGA---RVIGVDRREPGMT----LD---------------GFIQADLG------DPASIDAAVAALPGRIDAL 52 (241)
T ss_pred ChHHHHhCCC---EEEEEeCCcchhh----hh---------------HhhcccCC------CHHHHHHHHHHhcCCCeEE
Confidence 4678888865 6888888754311 00 0111 777 5566666655 58999
Q ss_pred EEccccccchHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCC--cccccccCCCCCHHHHHHhhhccC
Q psy16252 188 FHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRK--NIEEIIYKAHTHYSELLKISKLDV 264 (545)
Q Consensus 188 ih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~~~~~~~~~~~~~~~ 264 (545)
||+||... ..+++..+++|+.++..+++++... ..-.++|++||..+++... +..|..... .+ .
T Consensus 53 i~nAG~~~-~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~-~~-----------~ 119 (241)
T PRK12428 53 FNIAGVPG-TAPVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAAT-AS-----------F 119 (241)
T ss_pred EECCCCCC-CCCHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhcc-ch-----------H
Confidence 99999764 3457888999999999999998753 1236899999998775321 110100000 00 0
Q ss_pred CchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc------cCCCEEEEccceeecc
Q psy16252 265 DDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA------QFFPVCIFRPSIVIST 315 (545)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~------~~l~~~i~Rp~~i~g~ 315 (545)
+ +.+.... .........|+.||+..+.+.+..+ .|+++.+++||.|.++
T Consensus 120 ~-~~~~~~~-~~~~~~~~~Y~~sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~ 174 (241)
T PRK12428 120 D-EGAAWLA-AHPVALATGYQLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTP 174 (241)
T ss_pred H-HHHHhhh-ccCCCcccHHHHHHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCc
Confidence 0 0000000 0011223689999999988775432 5899999999999776
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.9e-07 Score=88.62 Aligned_cols=151 Identities=12% Similarity=-0.087 Sum_probs=91.5
Q ss_pred cCccEEEEcccccc-----c----hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCCcccccccCCCC
Q psy16252 182 SKVNLVFHCAATLR-----F----DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRKNIEEIIYKAHT 251 (545)
Q Consensus 182 ~~vd~Vih~Aa~~~-----~----~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~ 251 (545)
.++|++|||||... + .+.++..+++|+.|+.++++++... ..-.++|++||........
T Consensus 118 G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p~m~~~G~ii~iss~~~~~~~p----------- 186 (299)
T PRK06300 118 GHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGPIMNPGGSTISLTYLASMRAVP----------- 186 (299)
T ss_pred CCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCeEEEEeehhhcCcCC-----------
Confidence 36899999997521 1 2456788899999999999888752 1224788898875432110
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----c-CCCEEEEccceeeccCCCCCCCCcc
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----Q-FFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~-~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
.+...|+.||+..+.+.+.++ . |+++..+.||.|-.+....
T Consensus 187 ---------------------------~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~~------ 233 (299)
T PRK06300 187 ---------------------------GYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGKA------ 233 (299)
T ss_pred ---------------------------CccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhhc------
Confidence 011269999999988887654 2 7999999999885542110
Q ss_pred CccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 326 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
............. .. + .-.+...++++++++.++..... ...+.++.+.++
T Consensus 234 -~~~~~~~~~~~~~-~~---p-----~~r~~~peevA~~v~~L~s~~~~-----~itG~~i~vdGG 284 (299)
T PRK06300 234 -IGFIERMVDYYQD-WA---P-----LPEPMEAEQVGAAAAFLVSPLAS-----AITGETLYVDHG 284 (299)
T ss_pred -ccccHHHHHHHHh-cC---C-----CCCCcCHHHHHHHHHHHhCcccc-----CCCCCEEEECCC
Confidence 0000111111111 00 0 11245789999999887654322 123566666544
|
|
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=84.07 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=103.7
Q ss_pred CcEEEEec-cccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 97 GAEILMTG-ATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 97 ~~~VlITG-atGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+.||||| +.|.||-+|++++.+.|+ .|++..|.-.. ..++..+ .+....+ |++++
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~---~V~AtaR~~e~------M~~L~~~-------~gl~~~kLDV~~~------ 64 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGY---LVYATARRLEP------MAQLAIQ-------FGLKPYKLDVSKP------ 64 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCe---EEEEEccccch------HhhHHHh-------hCCeeEEeccCCh------
Confidence 58899988 579999999999999976 78988887432 2211110 1122222 88854
Q ss_pred HHHHHHhc--------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEecccccc
Q psy16252 175 DDKRLVTS--------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 175 ~~~~~l~~--------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~ 237 (545)
++..+... ..|+++|+||..- .....+..+++||.|..++.++.... +.-..+|++.|..++-
T Consensus 65 ~~V~~v~~evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v 144 (289)
T KOG1209|consen 65 EEVVTVSGEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV 144 (289)
T ss_pred HHHHHHHHHHhhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe
Confidence 33333322 5799999999742 13455788999999988877765531 1224799999997764
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
+ .+|...|..||+..-.+.+..+ -|++++-+-+|.|
T Consensus 145 p---------------------------------------fpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv 185 (289)
T KOG1209|consen 145 P---------------------------------------FPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGV 185 (289)
T ss_pred c---------------------------------------cchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccce
Confidence 3 1344789999998877776654 4556665555555
Q ss_pred e
Q psy16252 313 I 313 (545)
Q Consensus 313 ~ 313 (545)
-
T Consensus 186 ~ 186 (289)
T KOG1209|consen 186 A 186 (289)
T ss_pred e
Confidence 3
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=99.86 Aligned_cols=103 Identities=32% Similarity=0.567 Sum_probs=76.3
Q ss_pred CChhhhcCCCeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecccCCCChHHHHH-HhhhchhhHHHHhhCCCccccCC
Q psy16252 7 PSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID-KMLDTVAIIELIRNRPNQTIMGT 85 (545)
Q Consensus 7 ~~~~~~~~~~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (545)
.+|.+||+++++|+||||||+|+.|+++|++++|.+++||+|+|++.+.++.+|+. ++++. .+++.+++...
T Consensus 3 ~~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~-~~f~~~~~~~~------ 75 (491)
T PLN02996 3 GSCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGK-DLFKVLREKLG------ 75 (491)
T ss_pred ccHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhc-hHHHHHHHhcc------
Confidence 47899999999999999999999999999999999999999999999999999986 55554 34444433211
Q ss_pred CCCCchhhhhcCcEEEEecccc--ccc---hHHHHHHHh
Q psy16252 86 ASPPSLDDFYEGAEILMTGATG--FLG---KLLIEKLLR 119 (545)
Q Consensus 86 ~~~~~~~~~~~~~~VlITGatG--flG---~~l~~~Ll~ 119 (545)
....++...+..+|.|--. -+| ...++.+.+
T Consensus 76 ---~~~~~~~~~kv~~i~GDl~~~~LGLs~~~~~~~l~~ 111 (491)
T PLN02996 76 ---ENLNSLISEKVTPVPGDISYDDLGVKDSNLREEMWK 111 (491)
T ss_pred ---hhhhhhhhcCEEEEecccCCcCCCCChHHHHHHHHh
Confidence 1223334567788888754 233 233455655
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=101.26 Aligned_cols=103 Identities=29% Similarity=0.561 Sum_probs=77.3
Q ss_pred CChhhhcCCCeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecccCCCChHHHHHH-hhhchhhHHHHhhCCCccccCC
Q psy16252 7 PSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK-MLDTVAIIELIRNRPNQTIMGT 85 (545)
Q Consensus 7 ~~~~~~~~~~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 85 (545)
..|.+||.++++|+||||||+|+.|+++|++++|++++||+|+|++.+.++.+|+++ +++. .+++.+++...
T Consensus 111 ~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~-~lf~~l~~~~g------ 183 (605)
T PLN02503 111 IGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDA-ELFKCLQETHG------ 183 (605)
T ss_pred cchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhh-hhHHHHHHhcC------
Confidence 468899999999999999999999999999999999999999999999999999964 4454 56665554321
Q ss_pred CCCCchhhhhcCcEEEEecccccc--c--hHHHHHHHh
Q psy16252 86 ASPPSLDDFYEGAEILMTGATGFL--G--KLLIEKLLR 119 (545)
Q Consensus 86 ~~~~~~~~~~~~~~VlITGatGfl--G--~~l~~~Ll~ 119 (545)
....++...|.++|.|--.-- | ....+.|.+
T Consensus 184 ---~~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~ 218 (605)
T PLN02503 184 ---KSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAK 218 (605)
T ss_pred ---ccccccccccEEEEEeeCCCcccCCCHHHHHHHHh
Confidence 112233456788888865532 2 344555554
|
|
| >KOG1210|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-06 Score=81.60 Aligned_cols=202 Identities=18% Similarity=0.169 Sum_probs=121.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
.+|+|||++..+|..++..+..+|. .|.++.|+.+......+.-+... .+ ..+.+.. |+. +-+.
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga---~Vti~ar~~~kl~~a~~~l~l~~----~~--~~v~~~S~d~~------~Y~~ 98 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGA---DVTITARSGKKLLEAKAELELLT----QV--EDVSYKSVDVI------DYDS 98 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccC---ceEEEeccHHHHHHHHhhhhhhh----cc--ceeeEeccccc------cHHH
Confidence 6899999999999999999999876 57888888654222111111100 00 0122222 663 3333
Q ss_pred HHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc-cC---CceEEEEeccccccC
Q psy16252 177 KRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC-KN---LKMFTYVSTAFSNSY 238 (545)
Q Consensus 177 ~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~---~~~~v~vSS~~v~~~ 238 (545)
...++ -.+|.+|||||..- -.+..+...++|..||.|+++++... +. ..+++.+||..+.-.
T Consensus 99 v~~~~~~l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~ 178 (331)
T KOG1210|consen 99 VSKVIEELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLG 178 (331)
T ss_pred HHHHHhhhhhccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcC
Confidence 33333 35799999999741 12445778899999999999876542 22 338888988754321
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHH----HHHHHHHHhc-cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKA----AAEQLLCEEA-QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~----~aE~~~~~~~-~~l~~~i~Rp~~i~ 313 (545)
- ..-+.|+.||. ++|.+-++.. .++.++.+-|+.+-
T Consensus 179 i---------------------------------------~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~ 219 (331)
T KOG1210|consen 179 I---------------------------------------YGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTL 219 (331)
T ss_pred c---------------------------------------ccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCC
Confidence 1 00145666665 5566555554 78899999998876
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccc
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 371 (545)
.++-+- +|...|. ...+ -+..-+.+..+++|.+++.-+..
T Consensus 220 tpGfE~-----En~tkP~----------~t~i---i~g~ss~~~~e~~a~~~~~~~~r 259 (331)
T KOG1210|consen 220 TPGFER-----ENKTKPE----------ETKI---IEGGSSVIKCEEMAKAIVKGMKR 259 (331)
T ss_pred CCcccc-----ccccCch----------heee---ecCCCCCcCHHHHHHHHHhHHhh
Confidence 652110 1111110 0011 12333458889999998876543
|
|
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=4e-06 Score=80.02 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=108.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|+=..|||||..||+..+++|.++|. +|+.+.|.. ++|+...+++-+... -.+..+. |+++++- +-+
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~---nvvLIsRt~------~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~--~ye 116 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGF---NVVLISRTQ------EKLEAVAKEIEEKYK-VEVRIIAIDFTKGDE--VYE 116 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCC---EEEEEeCCH------HHHHHHHHHHHHHhC-cEEEEEEEecCCCch--hHH
Confidence 36689999999999999999999976 589999984 344443332221111 1122333 9998753 344
Q ss_pred HHHHHhc--CccEEEEcccccc-ch--------HHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCc
Q psy16252 176 DKRLVTS--KVNLVFHCAATLR-FD--------EELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKN 241 (545)
Q Consensus 176 ~~~~l~~--~vd~Vih~Aa~~~-~~--------~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~ 241 (545)
.+.+.+. ++-++|||+|... .. ...+....+|+.++..+.+..... ++-..+|++||.+...+..
T Consensus 117 ~i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p- 195 (312)
T KOG1014|consen 117 KLLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTP- 195 (312)
T ss_pred HHHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccCh-
Confidence 5555555 4568999999864 11 123456678999877777665431 2345789999986543210
Q ss_pred ccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHH----Hhc-cCCCEEEEccceeecc
Q psy16252 242 IEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLC----EEA-QFFPVCIFRPSIVIST 315 (545)
Q Consensus 242 i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~----~~~-~~l~~~i~Rp~~i~g~ 315 (545)
....|+.||..-+.+-. ++. .|+.+-.+=|..|.+.
T Consensus 196 --------------------------------------~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTk 236 (312)
T KOG1014|consen 196 --------------------------------------LLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATK 236 (312)
T ss_pred --------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecc
Confidence 11679999985555443 333 6888888888887665
|
|
| >KOG1204|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=77.85 Aligned_cols=166 Identities=18% Similarity=0.133 Sum_probs=102.7
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
.++.+|||||+-.||..++..+...+.+. .++...|.... .+.+....... ......|+++..+ ..
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~-~r~g~~r~~a~---~~~L~v~~gd~-------~v~~~g~~~e~~~---l~ 70 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEA-LRYGVARLLAE---LEGLKVAYGDD-------FVHVVGDITEEQL---LG 70 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHH-HHHhhhccccc---ccceEEEecCC-------cceechHHHHHHH---HH
Confidence 36889999999999999988888764332 33333343221 11110000000 0000002221100 01
Q ss_pred HHHHHhc----CccEEEEcccccc----------chHHHHHHHHHhHHHHHHHHHHHHHc-cC---CceEEEEecccccc
Q psy16252 176 DKRLVTS----KVNLVFHCAATLR----------FDEELKEAIRTNMCATQTMLDLAKQC-KN---LKMFTYVSTAFSNS 237 (545)
Q Consensus 176 ~~~~l~~----~vd~Vih~Aa~~~----------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~---~~~~v~vSS~~v~~ 237 (545)
++.++.+ +-|+||||||... -...++.+++.|+.+...|...+... ++ .+-+|++||.++..
T Consensus 71 al~e~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~ 150 (253)
T KOG1204|consen 71 ALREAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR 150 (253)
T ss_pred HHHhhhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc
Confidence 2222221 5799999999752 13557889999999999888877652 12 26789999987654
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---c-CCCEEEEccceee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---Q-FFPVCIFRPSIVI 313 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~-~l~~~i~Rp~~i~ 313 (545)
+- ..| ..|+.+|+.-+++.+..+ + ++.+..++||.|=
T Consensus 151 p~--------------------~~w-------------------a~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvD 191 (253)
T KOG1204|consen 151 PF--------------------SSW-------------------AAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVD 191 (253)
T ss_pred cc--------------------cHH-------------------HHhhhhHHHHHHHHHHHhhcCccceeEEEccCCccc
Confidence 32 112 689999999999998877 4 7889999999874
Q ss_pred c
Q psy16252 314 S 314 (545)
Q Consensus 314 g 314 (545)
.
T Consensus 192 T 192 (253)
T KOG1204|consen 192 T 192 (253)
T ss_pred c
Confidence 4
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.8e-07 Score=87.62 Aligned_cols=182 Identities=12% Similarity=0.021 Sum_probs=111.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC-cccCCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST-SKESAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~-~~~Dl~~~~lgl~~~ 175 (545)
.++|.||||+|.+|+.++..|...+ -..++.++.+......+. .+.+. ... .+.+++ +..
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~-~~~el~L~Di~~~~g~a~-Dl~~~-----------~~~~~i~~~~------~~~ 78 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNP-LVSELHLYDIANTPGVAA-DVSHI-----------NTPAQVRGFL------GDD 78 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEecCCCCeeEc-hhhhC-----------CcCceEEEEe------CCC
Confidence 4799999999999999999998664 245788887765111110 11000 000 000221 223
Q ss_pred HHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYS 254 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~ 254 (545)
++.+.++++|+|||+||..+. ..+..+....|+..++++++.+.+. ++.++++++|-=+.+....+..
T Consensus 79 d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD~~~~i~t~---------- 147 (323)
T PLN00106 79 QLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVNSTVPIAAE---------- 147 (323)
T ss_pred CHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCccccHHHHHH----------
Confidence 466778999999999998654 4567888899999999999999997 7899999998644321100000
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCC-CCCCCCc
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWK-EPIPGWI 324 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~-~~~~g~~ 324 (545)
.+...+ .-+....|+.++...+++-...+ .+++..-++--+|.+++. +-+|-|.
T Consensus 148 -------------~~~~~s---~~p~~~viG~~~LDs~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S 204 (323)
T PLN00106 148 -------------VLKKAG---VYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLS 204 (323)
T ss_pred -------------HHHHcC---CCCcceEEEEecchHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehh
Confidence 000000 00111567777777777766655 677777776444444423 4455554
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=85.67 Aligned_cols=122 Identities=14% Similarity=0.096 Sum_probs=83.8
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCc-ccCCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTS-KESAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~-~~Dl~~~~lgl~~ 174 (545)
+.++|.|+||+|.+|+.++..|...+ ...++.++.+......+. .+.+. .... +.+.+ ++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~-~~~elvL~Di~~~~g~a~-Dl~~~-----------~~~~~v~~~t------d~ 67 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNP-HVSELSLYDIVGAPGVAA-DLSHI-----------DTPAKVTGYA------DG 67 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCC-CCCEEEEEecCCCccccc-chhhc-----------CcCceEEEec------CC
Confidence 45799999999999999999888653 244788887732111111 11100 0000 00222 22
Q ss_pred HHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~ 237 (545)
.++.+.++++|+|||+||...- ..+....+..|+..++++++.+++. +++++|.++|..+..
T Consensus 68 ~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 68 ELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred CchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 3345677899999999998643 3456778899999999999999997 899999999986543
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=79.33 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=69.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCC----CcCEEEEEecCCCCCCH-HHHHHhhHHHHHHhhhhcCCCcccCCCC-----
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFP----RVKTIYVIVRAKKNQSP-QQRIDKMLDTVAISLKFTCSTSKESAQA----- 167 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~----~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~~~~~~~~~~~~~Dl~~----- 167 (545)
.+|+||||+|++|++++..|+..+- ....|++++|++....+ ...+ |+.+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~--------------------Dl~d~~~~~ 62 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVM--------------------ELQDCAFPL 62 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceee--------------------ehhhccccc
Confidence 5799999999999999999988531 11278888886432110 0000 2221
Q ss_pred -CCCCCCHHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 168 -PDLGLSPDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 168 -~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
.+.- ...++.+.++++|+|||+||..+. ..+..+.++.|+.-.+.+.+...+.
T Consensus 63 ~~~~~-~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~ 117 (325)
T cd01336 63 LKSVV-ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKY 117 (325)
T ss_pred cCCce-ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1110 124566677899999999998754 3455778899999999998887775
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=3e-05 Score=69.63 Aligned_cols=123 Identities=12% Similarity=0.132 Sum_probs=71.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lg 171 (545)
+++++++||||+|.||..++..|.+.|. +|++..|+... +..... .+.... ..++. |++
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~---~V~l~~r~~~~------~~~~~~----~l~~~~~~~~~~~~Dl~----- 75 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGA---KVIVTDIDQES------GQATVE----EITNLGGEALFVSYDME----- 75 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCC---EEEEEECCHHH------HHHHHH----HHHhcCCcEEEEEccCC-----
Confidence 5689999999999999999999999865 68887776421 111111 111111 12233 776
Q ss_pred CCHHHHHHHh-------cCccEEEEcccccc----chH-HHHHHHHHhHHHHHHHHHHHHH----------ccCCceEEE
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLR----FDE-ELKEAIRTNMCATQTMLDLAKQ----------CKNLKMFTY 229 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~----~~~-~~~~~~~~Nv~gt~~ll~~a~~----------~~~~~~~v~ 229 (545)
+.+++.+++ .++|++||+||... +.. +.+.....|+.++....+.+.. .....||-.
T Consensus 76 -~~~~v~~~v~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (169)
T PRK06720 76 -KQGDWQRVISITLNAFSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGI 154 (169)
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeE
Confidence 444554433 36899999999743 222 2112224455544333333221 123468888
Q ss_pred Eeccccc
Q psy16252 230 VSTAFSN 236 (545)
Q Consensus 230 vSS~~v~ 236 (545)
+||.++.
T Consensus 155 ~~~~~~~ 161 (169)
T PRK06720 155 IGTKGQS 161 (169)
T ss_pred ecccccc
Confidence 8887654
|
|
| >KOG1478|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0002 Score=65.96 Aligned_cols=184 Identities=13% Similarity=0.134 Sum_probs=104.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCC--cCEEEEEecCCCCC-CHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPR--VKTIYVIVRAKKNQ-SPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~--v~~V~~l~R~~~~~-~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
.|.++|||++..||-.|+.+|++...+ +-.+++-.|+-+.+ +.-.++.+ |..-+....+++. |++.-.--+
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~-----f~p~~~i~~~yvlvD~sNm~Sv~ 77 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKA-----FHPKSTIEVTYVLVDVSNMQSVF 77 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHH-----hCCCceeEEEEEEEehhhHHHHH
Confidence 488999999999999999999987433 12455556764321 11112221 1111111233444 665210000
Q ss_pred -CHHHHHHHhcCccEEEEccccccc----------------------------------hHHHHHHHHHhHHHHHHHHHH
Q psy16252 173 -SPDDKRLVTSKVNLVFHCAATLRF----------------------------------DEELKEAIRTNMCATQTMLDL 217 (545)
Q Consensus 173 -~~~~~~~l~~~vd~Vih~Aa~~~~----------------------------------~~~~~~~~~~Nv~gt~~ll~~ 217 (545)
...++.+-++..|.|+-+||...+ .+.+.+.++.||-|..-+++.
T Consensus 78 ~A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~ 157 (341)
T KOG1478|consen 78 RASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRE 157 (341)
T ss_pred HHHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhh
Confidence 001223334578999999987521 134556789999998777764
Q ss_pred HHH---ccCCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHH
Q psy16252 218 AKQ---CKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQL 294 (545)
Q Consensus 218 a~~---~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~ 294 (545)
... .+.-..+|.+||..+-... ++-++++.. ....+|.-||.+.+.+
T Consensus 158 l~pll~~~~~~~lvwtSS~~a~kk~------------------------lsleD~q~~------kg~~pY~sSKrl~DlL 207 (341)
T KOG1478|consen 158 LEPLLCHSDNPQLVWTSSRMARKKN------------------------LSLEDFQHS------KGKEPYSSSKRLTDLL 207 (341)
T ss_pred hhhHhhcCCCCeEEEEeeccccccc------------------------CCHHHHhhh------cCCCCcchhHHHHHHH
Confidence 432 1122389999998654322 111111111 1125799999998877
Q ss_pred HHHhc-----cCCCEEEEccceeecc
Q psy16252 295 LCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 295 ~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
-.... .|+.-.++.||+....
T Consensus 208 h~A~~~~~~~~g~~qyvv~pg~~tt~ 233 (341)
T KOG1478|consen 208 HVALNRNFKPLGINQYVVQPGIFTTN 233 (341)
T ss_pred HHHHhccccccchhhhcccCceeecc
Confidence 65543 4566677888887654
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.7e-05 Score=68.89 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=64.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|+++|||||||+|. +++.|.+.|+ +|.+..|++. +...... .+.. .....+. |+. +.+
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~---~V~v~~R~~~------~~~~l~~----~l~~~~~i~~~~~Dv~------d~~ 60 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGF---HVSVIARREV------KLENVKR----ESTTPESITPLPLDYH------DDD 60 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcC---EEEEEECCHH------HHHHHHH----HhhcCCcEEEEEccCC------CHH
Confidence 57999999998876 9999999876 5777777632 1111111 0110 1122233 777 555
Q ss_pred HHHHHhc-------CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCc----eEEEEecccc
Q psy16252 176 DKRLVTS-------KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLK----MFTYVSTAFS 235 (545)
Q Consensus 176 ~~~~l~~-------~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~----~~v~vSS~~v 235 (545)
++..+++ .+|++|+. +.+.++.++..+|++. +++ +|+|+=...+
T Consensus 61 sv~~~i~~~l~~~g~id~lv~~---------------vh~~~~~~~~~~~~~~-gv~~~~~~~~h~~gs~~ 115 (177)
T PRK08309 61 ALKLAIKSTIEKNGPFDLAVAW---------------IHSSAKDALSVVCREL-DGSSETYRLFHVLGSAA 115 (177)
T ss_pred HHHHHHHHHHHHcCCCeEEEEe---------------ccccchhhHHHHHHHH-ccCCCCceEEEEeCCcC
Confidence 6665554 35666653 3345678999999997 788 8888875544
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.7e-05 Score=72.45 Aligned_cols=35 Identities=20% Similarity=0.449 Sum_probs=29.2
Q ss_pred cCcEEEEeccc----------------cccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGAT----------------GFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGat----------------GflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
+||+||||+|. ||+|++|++.|++.|+ .|+++.+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga---~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA---HVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC---eEEEEeCC
Confidence 58999999875 9999999999999987 46666553
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.2e-05 Score=75.21 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=52.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
+++++|+||||||++|+.++++|.+. .++.+++.+.|+.. ++..+.. .+... +.
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~-~gv~~lilv~R~~~------rl~~La~---------------el~~~----~i 206 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAK-TGVAELLLVARQQE------RLQELQA---------------ELGGG----KI 206 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhh-CCCCEEEEEcCCHH------HHHHHHH---------------Hhccc----cH
Confidence 57899999999999999999999865 23568888887632 2222111 11111 12
Q ss_pred HHHHHHhcCccEEEEcccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
.++.+.+.++|+|||+++...
T Consensus 207 ~~l~~~l~~aDiVv~~ts~~~ 227 (340)
T PRK14982 207 LSLEEALPEADIVVWVASMPK 227 (340)
T ss_pred HhHHHHHccCCEEEECCcCCc
Confidence 246677889999999999754
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00014 Score=72.04 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=77.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCC--C---CC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPD--L---GL 172 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~--l---gl 172 (545)
|+|+|.||||.+|++++..|.........+.++.|.+. ... ..+ |+.+.. . |.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g-~al--------------------Dl~~~~~~~~i~~~ 58 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPG-VAV--------------------DLSHIPTAVKIKGF 58 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Ccc-eeh--------------------hhhcCCCCceEEEe
Confidence 68999999999999999988653223346666666533 111 001 332211 0 01
Q ss_pred CHHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecc
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA 233 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~ 233 (545)
+.+++.+.++++|+||.++|..+- ..+....+..|.....++++...+. +.++++.+.|-
T Consensus 59 ~~~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsN 119 (312)
T PRK05086 59 SGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITN 119 (312)
T ss_pred CCCCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccC
Confidence 123555566889999999998542 3345677899999999999999997 78888888874
|
|
| >KOG1199|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.8e-05 Score=68.33 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=99.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
.++-..+|||+...+|+..++.|.++|. .|..+.-+.+.... ....+.. +.-+.. |++ +
T Consensus 7 ~kglvalvtggasglg~ataerlakqga---sv~lldlp~skg~~---vakelg~--------~~vf~padvt------s 66 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQGA---SVALLDLPQSKGAD---VAKELGG--------KVVFTPADVT------S 66 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcCc---eEEEEeCCcccchH---HHHHhCC--------ceEEeccccC------c
Confidence 4578899999999999999999999864 56666655443221 1111111 111222 777 4
Q ss_pred HHHHHHHh-------cCccEEEEccccc------cc-------hHHHHHHHHHhHHHHHHHHHHHHHc-------cCCce
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATL------RF-------DEELKEAIRTNMCATQTMLDLAKQC-------KNLKM 226 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~------~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-------~~~~~ 226 (545)
+++....+ ...|+.++|||.. ++ -+.++..+++|+.||.|++++.... .+-+|
T Consensus 67 ekdv~aala~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqr 146 (260)
T KOG1199|consen 67 EKDVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQR 146 (260)
T ss_pred HHHHHHHHHHHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcc
Confidence 55555443 3689999999974 11 2455667788999999999876431 01234
Q ss_pred EEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHH----HHHHhc-cC
Q psy16252 227 FTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQ----LLCEEA-QF 301 (545)
Q Consensus 227 ~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~----~~~~~~-~~ 301 (545)
=|.+-|+++..-.+. -....|+.||...-- +.+..+ .|
T Consensus 147 gviintasvaafdgq-------------------------------------~gqaaysaskgaivgmtlpiardla~~g 189 (260)
T KOG1199|consen 147 GVIINTASVAAFDGQ-------------------------------------TGQAAYSASKGAIVGMTLPIARDLAGDG 189 (260)
T ss_pred eEEEeeceeeeecCc-------------------------------------cchhhhhcccCceEeeechhhhhcccCc
Confidence 444455544322111 111578888864422 233444 68
Q ss_pred CCEEEEccceeecc
Q psy16252 302 FPVCIFRPSIVIST 315 (545)
Q Consensus 302 l~~~i~Rp~~i~g~ 315 (545)
++++.+-||..-.|
T Consensus 190 ir~~tiapglf~tp 203 (260)
T KOG1199|consen 190 IRFNTIAPGLFDTP 203 (260)
T ss_pred eEEEeecccccCCh
Confidence 88888888876443
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00082 Score=66.88 Aligned_cols=168 Identities=11% Similarity=0.049 Sum_probs=102.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcC-----EEEEEecCCCCCCH-HHHHHhhHHHHHHhhhhcCCCcccCCCCCC-
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVK-----TIYVIVRAKKNQSP-QQRIDKMLDTVAISLKFTCSTSKESAQAPD- 169 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~-----~V~~l~R~~~~~~~-~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~- 169 (545)
.++|.|+||+|.+|..++..|+..+. .. .++.+.+.+....+ .+.+ |+.+..
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~-~~~~~~~el~L~Di~~~~~~a~g~a~--------------------Dl~~~~~ 60 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEM-FGPDQPVILQLLELPQALKALEGVAM--------------------ELEDCAF 60 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccc-cCCCCceEEEEEecCCcccccceeeh--------------------hhhhccc
Confidence 36899999999999999999987642 23 67777764322100 0111 221111
Q ss_pred --C---CCCHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCccc
Q psy16252 170 --L---GLSPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIE 243 (545)
Q Consensus 170 --l---gl~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~ 243 (545)
+ -....+ .+.++++|+||.+||..+ ...+..+.+..|+.-.+.+.+...+......++.+-|--+
T Consensus 61 ~~~~~~~i~~~~-~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv-------- 131 (322)
T cd01338 61 PLLAEIVITDDP-NVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC-------- 131 (322)
T ss_pred cccCceEEecCc-HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH--------
Confidence 0 001122 345689999999999854 2345567789999999999998887521234443333110
Q ss_pred ccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCC--chHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCC
Q psy16252 244 EIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENM--NTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 244 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~ 317 (545)
| ++ .....+..+.+| ..|+.|+...+++....+ .+++...+|..+|+|++.
T Consensus 132 --------D---~~------------t~~~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG 186 (322)
T cd01338 132 --------N---TN------------ALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS 186 (322)
T ss_pred --------H---HH------------HHHHHHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc
Confidence 0 00 000000111111 578889999999888776 688889999888889753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00027 Score=69.66 Aligned_cols=70 Identities=27% Similarity=0.451 Sum_probs=57.0
Q ss_pred CeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecccCCCChHHHHHHhhhchhhHHHHhhCCCccccCCCCCCchhhhh
Q psy16252 16 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIRNRPNQTIMGTASPPSLDDFY 95 (545)
Q Consensus 16 ~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (545)
+++|.||||||+|..|+.+++.+.+ .+++|+||++....+.+|+++.+.....++. .+
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~--~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e--------------------~~ 58 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQSDEAALARLEKTFDLYRHWDE--------------------LS 58 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC--CcEEEEEecCCHHHHHHHHHHHhhhhhhhhh--------------------hh
Confidence 4799999999999999999999765 8999999999988889999998875444432 23
Q ss_pred cCcEEEEecccc
Q psy16252 96 EGAEILMTGATG 107 (545)
Q Consensus 96 ~~~~VlITGatG 107 (545)
..+...|.|--+
T Consensus 59 ~~ri~vv~gDl~ 70 (382)
T COG3320 59 ADRVEVVAGDLA 70 (382)
T ss_pred cceEEEEecccc
Confidence 457778888666
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00064 Score=64.28 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=54.3
Q ss_pred EEEEe-ccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 99 EILMT-GATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 99 ~VlIT-GatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
.-+|| .+|||+|.+|++.|+++|+ +|+++.|........ .....++. +-.+. ..+.
T Consensus 17 VR~itN~SSG~iG~aLA~~L~~~G~---~V~li~r~~~~~~~~---------------~~~v~~i~v~s~~~----m~~~ 74 (229)
T PRK06732 17 VRGITNHSTGQLGKIIAETFLAAGH---EVTLVTTKTAVKPEP---------------HPNLSIIEIENVDD----LLET 74 (229)
T ss_pred ceeecCccchHHHHHHHHHHHhCCC---EEEEEECcccccCCC---------------CCCeEEEEEecHHH----HHHH
Confidence 33555 5899999999999999976 677777653211000 00011111 00000 0133
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHH
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQ 220 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~ 220 (545)
+.+.++++|+|||+||...+.. ....-..+...+.++..++++
T Consensus 75 l~~~~~~~DivIh~AAvsd~~~-~~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 75 LEPLVKDHDVLIHSMAVSDYTP-VYMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred HHHHhcCCCEEEeCCccCCcee-hhhhhhhhhhhhhhhhhhhcc
Confidence 4555678999999999876432 111123344445555566654
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0013 Score=65.52 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=70.2
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcC-----EEEEEecCCC--CCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCC
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVK-----TIYVIVRAKK--NQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLG 171 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~-----~V~~l~R~~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lg 171 (545)
+|.||||+|.+|+.++..|...+. .. .++.+.+.+. .... ..+ |+.+....
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~-~~~~~~~~l~L~Di~~~~~~~~g-~~~--------------------Dl~d~~~~ 59 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGEL-FGDDQPVILHLLDIPPAMKALEG-VVM--------------------ELQDCAFP 59 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCc-cCCCCceEEEEEecCCccCccce-eee--------------------ehhhhccc
Confidence 689999999999999998887632 22 3777777642 1110 000 33322100
Q ss_pred -CC----HHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 172 -LS----PDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 172 -l~----~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
+. .....+.++++|+|||+||..+- .++..+....|+.-.+++.....+..+...++.+
T Consensus 60 ~~~~~~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiiv 124 (323)
T cd00704 60 LLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLV 124 (323)
T ss_pred ccCCcEEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEE
Confidence 00 02345667899999999998643 3456778899999999999888876223443333
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0085 Score=60.24 Aligned_cols=41 Identities=12% Similarity=-0.025 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCCCCC
Q psy16252 282 NTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEPIPG 322 (545)
Q Consensus 282 ~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~~~g 322 (545)
+.-+..|..-|..++..+ .++++.++-.+.+.......+|+
T Consensus 238 g~mG~AKa~LE~~~r~La~~L~~~giran~i~~g~~~T~Ass~Ip~ 283 (398)
T PRK13656 238 GTIGKAKKDLDRTALALNEKLAAKGGDAYVSVLKAVVTQASSAIPV 283 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhcCCC
Confidence 467899999999998775 57788888777776655555544
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0005 Score=66.21 Aligned_cols=83 Identities=33% Similarity=0.451 Sum_probs=54.5
Q ss_pred EEcchhhhHHHHHHHHHhhCCCccEEEEEecccCCCChHHHHHHhhhchhhHHHHhhCCCccccCCCCCCchhhhhcCcE
Q psy16252 20 MTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIRNRPNQTIMGTASPPSLDDFYEGAE 99 (545)
Q Consensus 20 ~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (545)
+||+|||+|.+|+.+|+++.+.+ +|++|+|++...++.+|+.+.+....+++.... ....+.
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~-~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~-----------------~~~~ri 62 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDV-KIYCLVRASSSQSALERLKDALKEYGLWDDLDK-----------------EALSRI 62 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TT-EEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-H-----------------HHTTTE
T ss_pred CcCCCcHHHHHHHHHHHcCCCCc-EEEEEEeCcccccchhhhhhhcccccchhhhhh-----------------hhhccE
Confidence 59999999999999999998767 999999988877888888777665555543321 023577
Q ss_pred EEEeccccc----cchHHHHHHHhh
Q psy16252 100 ILMTGATGF----LGKLLIEKLLRS 120 (545)
Q Consensus 100 VlITGatGf----lG~~l~~~Ll~~ 120 (545)
.+|.|--.- |...-...|.+.
T Consensus 63 ~~v~GDl~~~~lGL~~~~~~~L~~~ 87 (249)
T PF07993_consen 63 EVVEGDLSQPNLGLSDEDYQELAEE 87 (249)
T ss_dssp EEEE--TTSGGGG--HHHHHHHHHH
T ss_pred EEEeccccccccCCChHHhhccccc
Confidence 888886553 334555666554
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00063 Score=69.58 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=51.2
Q ss_pred hcCcEEEEecc----------------ccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC
Q psy16252 95 YEGAEILMTGA----------------TGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC 158 (545)
Q Consensus 95 ~~~~~VlITGa----------------tGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~ 158 (545)
++|++|+|||| ||.+|.++++.|.+.|. +|+++.++...... . .
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga---~V~~v~~~~~~~~~-~----------------~ 245 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA---DVTLVSGPVNLPTP-A----------------G 245 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC---EEEEeCCCccccCC-C----------------C
Confidence 57899999999 99999999999999976 67777765421100 0 0
Q ss_pred CCccc-CCCCCCCCCCHHHHHHH----hcCccEEEEccccccch
Q psy16252 159 STSKE-SAQAPDLGLSPDDKRLV----TSKVNLVFHCAATLRFD 197 (545)
Q Consensus 159 ~~~~~-Dl~~~~lgl~~~~~~~l----~~~vd~Vih~Aa~~~~~ 197 (545)
+.. |++ +.+++.+. +.++|++||+||...+.
T Consensus 246 --~~~~dv~------~~~~~~~~v~~~~~~~DilI~~Aav~d~~ 281 (399)
T PRK05579 246 --VKRIDVE------SAQEMLDAVLAALPQADIFIMAAAVADYR 281 (399)
T ss_pred --cEEEccC------CHHHHHHHHHHhcCCCCEEEEcccccccc
Confidence 001 555 34444433 34789999999986543
|
|
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00025 Score=79.35 Aligned_cols=131 Identities=21% Similarity=0.231 Sum_probs=92.5
Q ss_pred EEEeccccccchHHHHHHHhhCC--CcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC---CCccc-CCCCCCCCCC
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFP--RVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC---STSKE-SAQAPDLGLS 173 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~--~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~---~~~~~-Dl~~~~lgl~ 173 (545)
+++||.+|++|+...+.+..... ....+.+++|..+..+...+...... .+....... ...+. ++.+..+|+.
T Consensus 721 ~~~~~~~~~l~~~~l~~~~~~~~~~~~i~~~~~~~a~~e~a~~~~~~~~i~-~~~~~~e~~~i~~~~~~~~~~~~~~~~~ 799 (1032)
T KOG1178|consen 721 VFLTGYTGYLGRRKLSNLVKLSNFFYIILVFALVRASSEEASGGRLQDAIQ-IYGVLNEELLINIIVHLIDLSKSLFGLE 799 (1032)
T ss_pred eeeeeccceehhhhhhhhhhhhhhhheeeeEEEeccCCchhhccchhchhh-hhhhccccccceeeeehhhhhhhhhccc
Confidence 89999999999999988877621 12247778888766555455444322 222222211 11222 8888888888
Q ss_pred HHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecc
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA 233 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~ 233 (545)
...+..+.+.++.++|+++.++...++......|+.++.+.+....... +.+..+|+.
T Consensus 800 ~~l~~~l~~~~~~~i~~~~~~~~v~~~t~~~~~~~~~~~~~~~l~~~l~--~~~~~~s~~ 857 (1032)
T KOG1178|consen 800 DTLWNKLQEPVSIVIHNGALVHEVLRYTELRYPNVIGTITVLPLYSFLK--KKPKDISLS 857 (1032)
T ss_pred chhhhccccCcceecccccceeeechhhccCCceeeeeeeeeeeecccc--ccceeEEee
Confidence 8889999999999999999999888888888899999999888887642 334444443
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0023 Score=63.83 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=70.7
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcC-----EEEEEecCCCCCCHH-HHHHhhHHHHHHhhhhcCCCcccCCCCCCCCC
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVK-----TIYVIVRAKKNQSPQ-QRIDKMLDTVAISLKFTCSTSKESAQAPDLGL 172 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~-----~V~~l~R~~~~~~~~-~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl 172 (545)
+|.|+||+|.+|++++..|...+. +. .++.+.+.+....+. +.+ |+.+...-+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~-~~~~~e~el~LiD~~~~~~~a~g~~~--------------------Dl~d~~~~~ 59 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRM-LGKDQPIILHLLDIPPAMKVLEGVVM--------------------ELMDCAFPL 59 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccc-cCCCCccEEEEEecCCcccccceeEe--------------------ehhcccchh
Confidence 489999999999999999987532 11 477777754321000 000 333322000
Q ss_pred -C----HHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEe
Q psy16252 173 -S----PDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVS 231 (545)
Q Consensus 173 -~----~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vS 231 (545)
. .....+.++++|+|||+||..+- .++..+....|+.-.+.+.+...+..+...++.+-
T Consensus 60 ~~~~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivv 124 (324)
T TIGR01758 60 LDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVV 124 (324)
T ss_pred cCceeccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 0 01224566899999999998654 34467788999999999999888852233444443
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >KOG1202|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0079 Score=66.66 Aligned_cols=162 Identities=16% Similarity=0.222 Sum_probs=113.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc---CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE---SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~---Dl~~~~lgl~ 173 (545)
.|+.+|+||-|..|-.|+..|+.+| .+.++...|+.-..-...+ ...+++...+.+.- |++ .
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RG--ar~lVLtSRsGirtGYQa~-------~vrrWr~~GVqV~vsT~nit------t 1832 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRG--ARKLVLTSRSGIRTGYQAL-------MVRRWRRRGVQVQVSTSNIT------T 1832 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcC--ceEEEEeccccchhhHHHH-------HHHHHHhcCeEEEEecccch------h
Confidence 5889999999999999999999995 4577777787533222111 12233444454433 666 3
Q ss_pred HHHHHHHhc------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH-ccCCceEEEEeccccccCC
Q psy16252 174 PDDKRLVTS------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ-CKNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 174 ~~~~~~l~~------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~~~v~vSS~~v~~~~ 239 (545)
.+.-..+++ -+--|||+|+..+- .++++..-+.-+.||.||=+..++ |+.++-||..||.++.-..
T Consensus 1833 ~~ga~~Li~~s~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN 1912 (2376)
T KOG1202|consen 1833 AEGARGLIEESNKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGN 1912 (2376)
T ss_pred hhhHHHHHHHhhhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCC
Confidence 344455554 35679999998642 244555666788899999888877 5678899999998654221
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEcccee
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIV 312 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i 312 (545)
...+.|+.+....|+++.+.. .|+|-+.+.=|.|
T Consensus 1913 ---------------------------------------~GQtNYG~aNS~MERiceqRr~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1913 ---------------------------------------AGQTNYGLANSAMERICEQRRHEGFPGTAIQWGAI 1947 (2376)
T ss_pred ---------------------------------------CcccccchhhHHHHHHHHHhhhcCCCcceeeeecc
Confidence 112679999999999998877 8888888776665
|
|
| >KOG2733|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0043 Score=60.33 Aligned_cols=86 Identities=17% Similarity=0.348 Sum_probs=56.6
Q ss_pred EEEEeccccccchHHHHHHHhhC-CCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh---hcCCCccc-CCCCCCCCCC
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSF-PRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK---FTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g-~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~---~~~~~~~~-Dl~~~~lgl~ 173 (545)
-+.|-|||||.|+++++++++.+ .+...+-+-.|+ +++|++.+........ ...+ ++- |.+ |
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn------~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~------n 73 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRN------EKKLQEVLEKVGEKTGTDLSSSV-ILIADSA------N 73 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCC------HHHHHHHHHHHhhccCCCcccce-EEEecCC------C
Confidence 47899999999999999999842 112234444454 3455555443111111 1111 222 777 7
Q ss_pred HHHHHHHhcCccEEEEccccccch
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFD 197 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~ 197 (545)
++++.++++.+.+|+||+|+-++.
T Consensus 74 ~~Sl~emak~~~vivN~vGPyR~h 97 (423)
T KOG2733|consen 74 EASLDEMAKQARVIVNCVGPYRFH 97 (423)
T ss_pred HHHHHHHHhhhEEEEeccccceec
Confidence 789999999999999999987654
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0031 Score=60.44 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=61.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|||+||||. |+.|++.|.+.|+ +|+..+|...+....... ... .+... +++.+++
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~---~v~~s~~t~~~~~~~~~~--------------g~~---~v~~g--~l~~~~l 57 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGI---EILVTVTTSEGKHLYPIH--------------QAL---TVHTG--ALDPQEL 57 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCC---eEEEEEccCCcccccccc--------------CCc---eEEEC--CCCHHHH
Confidence 57999999999 9999999998875 678888876543211100 000 11111 1366777
Q ss_pred HHHhc--CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceE
Q psy16252 178 RLVTS--KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMF 227 (545)
Q Consensus 178 ~~l~~--~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~ 227 (545)
..+++ ++|+|||++... . ..-+.|+.++|++. ++.-+
T Consensus 58 ~~~l~~~~i~~VIDAtHPf------A------~~is~~a~~a~~~~-~ipyl 96 (256)
T TIGR00715 58 REFLKRHSIDILVDATHPF------A------AQITTNATAVCKEL-GIPYV 96 (256)
T ss_pred HHHHHhcCCCEEEEcCCHH------H------HHHHHHHHHHHHHh-CCcEE
Confidence 66665 599999987542 1 13356888899887 65433
|
This enzyme was found to be a monomer by gel filtration. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0069 Score=55.86 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=51.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc-CCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT-CSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~-Dl~~~~lgl 172 (545)
+++++++|+||||.+|+.+++.|.+.|. +|+++.|.. ++.+..... +... ...... |..
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~---~V~l~~R~~------~~~~~l~~~----l~~~~~~~~~~~~~~------ 86 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA---RVVLVGRDL------ERAQKAADS----LRARFGEGVGAVETS------ 86 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCH------HHHHHHHHH----HHhhcCCcEEEeeCC------
Confidence 3579999999999999999999998753 688787763 222221111 1100 111111 333
Q ss_pred CHHHHHHHhcCccEEEEcccc
Q psy16252 173 SPDDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~ 193 (545)
+.+++.++++++|+||++.+.
T Consensus 87 ~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 87 DDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred CHHHHHHHHhcCCEEEECCCC
Confidence 556777888899999997654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.068 Score=49.19 Aligned_cols=216 Identities=14% Similarity=0.074 Sum_probs=117.3
Q ss_pred hhcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC-ccc-CCCCCC
Q psy16252 94 FYEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST-SKE-SAQAPD 169 (545)
Q Consensus 94 ~~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~-~~~-Dl~~~~ 169 (545)
+++||++||+|-.- .|+..+++.|.++|.+ +......+ ....|++...+. + ... +++ |++
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAe---L~fTy~~e---~l~krv~~la~~----~---~s~~v~~cDV~--- 66 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAE---LAFTYQGE---RLEKRVEELAEE----L---GSDLVLPCDVT--- 66 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCE---EEEEeccH---HHHHHHHHHHhh----c---cCCeEEecCCC---
Confidence 36799999999654 6889999999999764 33332222 223344332221 1 112 233 887
Q ss_pred CCCCHHHHHHHhc-------CccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEE--
Q psy16252 170 LGLSPDDKRLVTS-------KVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFT-- 228 (545)
Q Consensus 170 lgl~~~~~~~l~~-------~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v-- 228 (545)
+.+++..+++ +.|.++|+-|...- .+.+....++...+-..+.+.|+.. +.=..++
T Consensus 67 ---~d~~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltL 143 (259)
T COG0623 67 ---NDESIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTL 143 (259)
T ss_pred ---CHHHHHHHHHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEE
Confidence 5566666654 67999999887531 1233344445555555555555542 1112222
Q ss_pred -EEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCC
Q psy16252 229 -YVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFF 302 (545)
Q Consensus 229 -~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l 302 (545)
|..|.-+.+ .-|..+..|+.-|.-++..+ .|+
T Consensus 144 tYlgs~r~vP------------------------------------------nYNvMGvAKAaLEasvRyLA~dlG~~gI 181 (259)
T COG0623 144 TYLGSERVVP------------------------------------------NYNVMGVAKAALEASVRYLAADLGKEGI 181 (259)
T ss_pred EeccceeecC------------------------------------------CCchhHHHHHHHHHHHHHHHHHhCccCe
Confidence 222222211 11789999999999998775 667
Q ss_pred CEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCC
Q psy16252 303 PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSC 382 (545)
Q Consensus 303 ~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~ 382 (545)
++..+-.|-|=.-...++.+ ...++..... .....--+..++|.+....++..... ...
T Consensus 182 RVNaISAGPIrTLAasgI~~-------f~~~l~~~e~---------~aPl~r~vt~eeVG~tA~fLlSdLss-----giT 240 (259)
T COG0623 182 RVNAISAGPIRTLAASGIGD-------FRKMLKENEA---------NAPLRRNVTIEEVGNTAAFLLSDLSS-----GIT 240 (259)
T ss_pred EEeeecccchHHHHhhcccc-------HHHHHHHHHh---------hCCccCCCCHHHhhhhHHHHhcchhc-----ccc
Confidence 77766655442222222111 1222222111 01122235577887776666655433 224
Q ss_pred CCEEEeecC
Q psy16252 383 LPIYNYVNS 391 (545)
Q Consensus 383 ~~vy~i~~~ 391 (545)
+++.++.++
T Consensus 241 Gei~yVD~G 249 (259)
T COG0623 241 GEIIYVDSG 249 (259)
T ss_pred cceEEEcCC
Confidence 677777765
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0013 Score=55.62 Aligned_cols=35 Identities=23% Similarity=0.573 Sum_probs=29.1
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+|.|.||||++|+.|++.|.++ ++...+.+..|+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeecc
Confidence 6899999999999999999995 6676666666665
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0066 Score=62.58 Aligned_cols=89 Identities=18% Similarity=0.315 Sum_probs=57.5
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDKR 178 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~~ 178 (545)
|+|.|| |++|+.+++.|++.+ ...+|.+..|+.. +++..... +...+.+... |+. +.+++.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~-~~~~v~va~r~~~------~~~~~~~~----~~~~~~~~~~~d~~------~~~~l~ 62 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRG-PFEEVTVADRNPE------KAERLAEK----LLGDRVEAVQVDVN------DPESLA 62 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTT-CE-EEEEEESSHH------HHHHHHT------TTTTEEEEE--TT------THHHHH
T ss_pred CEEEcC-cHHHHHHHHHHhcCC-CCCcEEEEECCHH------HHHHHHhh----ccccceeEEEEecC------CHHHHH
Confidence 789999 999999999999984 3447888888742 22222110 1112333333 776 778899
Q ss_pred HHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 179 LVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 179 ~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
++++++|+||||++.. +. ..++++|.+.
T Consensus 63 ~~~~~~dvVin~~gp~-~~--------------~~v~~~~i~~ 90 (386)
T PF03435_consen 63 ELLRGCDVVINCAGPF-FG--------------EPVARACIEA 90 (386)
T ss_dssp HHHTTSSEEEE-SSGG-GH--------------HHHHHHHHHH
T ss_pred HHHhcCCEEEECCccc-hh--------------HHHHHHHHHh
Confidence 9999999999999875 11 2567788776
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0059 Score=52.99 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=72.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
++|.|.||+|.+|.+++..|...+. ..+++++.+.... .+....-+......... .. .+.. ..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~~~~---~~g~a~Dl~~~~~~~~~-~~----~i~~--------~~ 63 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDINEDK---AEGEALDLSHASAPLPS-PV----RITS--------GD 63 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESSHHH---HHHHHHHHHHHHHGSTE-EE----EEEE--------SS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccCccc---ceeeehhhhhhhhhccc-cc----cccc--------cc
Confidence 5799999999999999999998753 5678888876431 11111111110000000 00 1110 11
Q ss_pred HHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEe
Q psy16252 178 RLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVS 231 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vS 231 (545)
.+.++++|+||-+|+..+ ...+..+.++.|+.-.+.+.+...+. ..+.++.+-
T Consensus 64 ~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivv 117 (141)
T PF00056_consen 64 YEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVV 117 (141)
T ss_dssp GGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-
T ss_pred ccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEe
Confidence 234578999999999753 33456777899999999999988886 444444333
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0075 Score=60.84 Aligned_cols=89 Identities=21% Similarity=0.268 Sum_probs=63.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
++|+|.|| |++|+.++..|.+++. .+|++..|+..+ ..++... . ..+.+.++ |+. +.+.
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d--~~V~iAdRs~~~---~~~i~~~-------~-~~~v~~~~vD~~------d~~a 61 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGD--GEVTIADRSKEK---CARIAEL-------I-GGKVEALQVDAA------DVDA 61 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCC--ceEEEEeCCHHH---HHHHHhh-------c-cccceeEEeccc------ChHH
Confidence 78999999 9999999999999853 589999998532 1222110 0 01333444 777 6678
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
+.+++++.|+|||++.... +.+++++|.+.
T Consensus 62 l~~li~~~d~VIn~~p~~~---------------~~~i~ka~i~~ 91 (389)
T COG1748 62 LVALIKDFDLVINAAPPFV---------------DLTILKACIKT 91 (389)
T ss_pred HHHHHhcCCEEEEeCCchh---------------hHHHHHHHHHh
Confidence 8999999999999987521 12678888886
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=58.11 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=71.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCH-HHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP-QQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
|+|.|+||||.+|..++..|+..|. ...|+++.|..+.... ..++. +.+.+..... +. .+-.. .+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~~~~~~l~~~~~d-----l~d~~~~~~~----~~---~i~~~-~d 66 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRPKSLEKLKGLRLD-----IYDALAAAGI----DA---EIKIS-SD 66 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECcccccccccccch-----hhhchhccCC----Cc---EEEEC-CC
Confidence 5799999999999999999998864 3478888885311111 01100 1110000000 10 01001 12
Q ss_pred HHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
++. +.++|+||-+++..+- ..+.....+.|+.-.+.+++...+...-..++.+|+
T Consensus 67 ~~~-l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 67 LSD-VAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred HHH-hCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 444 7899999999997543 234466778899999999887776522124454443
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.038 Score=55.04 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=71.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcC-----EEEEEecCCCCC-CHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVK-----TIYVIVRAKKNQ-SPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLG 171 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~-----~V~~l~R~~~~~-~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lg 171 (545)
-+|.|+||+|++|..++..|+..+. .. .++.+.+.+... ...+.++ +. |..-+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~-~~~~~~~el~L~Di~~~~~~a~g~a~D--l~---------------~~~~~~~~ 65 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGEL-FGKDQPVVLHLLDIPPAMKALEGVAME--LE---------------DCAFPLLA 65 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCc-ccCCCccEEEEEecCCcccccchHHHH--Hh---------------hccccccC
Confidence 6899999999999999999987642 33 677777754211 1111111 00 11100000
Q ss_pred ---CCHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCC-ceEEEEec
Q psy16252 172 ---LSPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNL-KMFTYVST 232 (545)
Q Consensus 172 ---l~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~-~~~v~vSS 232 (545)
....+ .+.++++|+||.+||..+ ..++..+....|+.-.+.+.+.+.+. .. ..++.+-|
T Consensus 66 ~~~i~~~~-~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~-~~~~~iiivvs 129 (323)
T TIGR01759 66 GVVATTDP-EEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKV-AKKDVKVLVVG 129 (323)
T ss_pred CcEEecCh-HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCCeEEEEeC
Confidence 01122 345589999999999754 33556778899999999999888886 33 44444444
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.035 Score=56.60 Aligned_cols=183 Identities=18% Similarity=0.136 Sum_probs=92.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCC-CCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQ-APDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~-~~~lgl 172 (545)
-..++|.|.||||++|..|++.|..+ +. .+|..+.+..... +.+... .+.+.. |+. ..+ +
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~h-P~-~el~~l~s~~saG---~~i~~~-----------~~~l~~~~~~~~~~--~ 97 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANH-PD-FEITVMTADRKAG---QSFGSV-----------FPHLITQDLPNLVA--V 97 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhC-CC-CeEEEEEChhhcC---CCchhh-----------CccccCccccceec--C
Confidence 34579999999999999999999887 43 4778877753221 111100 111111 221 111 1
Q ss_pred CHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCC
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTH 252 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~ 252 (545)
+. .. ++++|+||-+.+.- ...+++..+. . + +++|-.|+.+-..+.. .-|+.|..|..
T Consensus 98 ~~---~~-~~~~DvVf~Alp~~---------------~s~~i~~~~~-~-g-~~VIDlSs~fRl~~~~-~y~~~y~~p~~ 154 (381)
T PLN02968 98 KD---AD-FSDVDAVFCCLPHG---------------TTQEIIKALP-K-D-LKIVDLSADFRLRDIA-EYEEWYGHPHR 154 (381)
T ss_pred CH---HH-hcCCCEEEEcCCHH---------------HHHHHHHHHh-C-C-CEEEEcCchhccCCcc-cchhccCCCCC
Confidence 11 22 37899999876541 2345555543 3 3 6899999998765432 23444444332
Q ss_pred HHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCC---CEEEEccceeeccCCCC
Q psy16252 253 YSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFF---PVCIFRPSIVISTWKEP 319 (545)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l---~~~i~Rp~~i~g~~~~~ 319 (545)
..++....-..+.|-.-+.+.....-..|+.|+.+=.++=.=+.+.. .+ ++++-=...+-|.+..+
T Consensus 155 ~pe~~~~~~yglpE~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~-~i~~~~iiv~a~sgvSGAG~~~ 223 (381)
T PLN02968 155 APELQKEAVYGLTELQREEIKSARLVANPGCYPTGIQLPLVPLVKAG-LIEPDNIIIDAKSGVSGAGRGA 223 (381)
T ss_pred CcccchhhhcccchhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcC-CCCCceEEEEEeeeccccCccc
Confidence 11111110000111111122222233557888887776655555532 22 34444445555554433
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0071 Score=54.90 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=40.6
Q ss_pred cCcEEEEecc----------------ccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCC
Q psy16252 96 EGAEILMTGA----------------TGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159 (545)
Q Consensus 96 ~~~~VlITGa----------------tGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~ 159 (545)
+||+||||+| ||-.|.+|++.+...|+ .|.++..+.. ..... ..
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga---~V~li~g~~~-~~~p~----------------~~ 61 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGA---EVTLIHGPSS-LPPPP----------------GV 61 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT----EEEEEE-TTS-----T----------------TE
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCC---EEEEEecCcc-ccccc----------------cc
Confidence 4677777764 68899999999999987 5666655532 11000 01
Q ss_pred CcccCCCCCCCCCCHH----HHHHHhcCccEEEEccccccch
Q psy16252 160 TSKESAQAPDLGLSPD----DKRLVTSKVNLVFHCAATLRFD 197 (545)
Q Consensus 160 ~~~~Dl~~~~lgl~~~----~~~~l~~~vd~Vih~Aa~~~~~ 197 (545)
+.+ ++. +.+ .+.+.+.+.|++||+||...|.
T Consensus 62 ~~i-~v~------sa~em~~~~~~~~~~~Di~I~aAAVsDf~ 96 (185)
T PF04127_consen 62 KVI-RVE------SAEEMLEAVKELLPSADIIIMAAAVSDFR 96 (185)
T ss_dssp EEE-E-S------SHHHHHHHHHHHGGGGSEEEE-SB--SEE
T ss_pred eEE-Eec------chhhhhhhhccccCcceeEEEecchhhee
Confidence 111 121 222 3344556789999999998764
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.035 Score=54.82 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=70.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCC----CC-CC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAP----DL-GL 172 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~----~l-gl 172 (545)
++|.|+||+|.+|++++..|...+. ..+++++.+. .... +.+ |+.+. .+ +.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~-~a~g--~al--------------------DL~~~~~~~~i~~~ 56 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIV-NTPG--VAA--------------------DLSHINTPAKVTGY 56 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecC-ccce--eeh--------------------HhHhCCCcceEEEe
Confidence 4799999999999999998887643 4567777665 2111 111 11111 00 00
Q ss_pred -CHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEE
Q psy16252 173 -SPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTY 229 (545)
Q Consensus 173 -~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~ 229 (545)
..+++.+.++++|+||-+||..+ ..++..+..+.|..-.+.+++...+. +.+.++.
T Consensus 57 ~~~~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vi 114 (310)
T cd01337 57 LGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALIL 114 (310)
T ss_pred cCCCchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEE
Confidence 11234456789999999999854 34456778899999999999888876 4444443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.018 Score=58.77 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=49.2
Q ss_pred hcCcEEEEecc----------------ccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC
Q psy16252 95 YEGAEILMTGA----------------TGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC 158 (545)
Q Consensus 95 ~~~~~VlITGa----------------tGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~ 158 (545)
++|++|+|||| ||.+|.++++.|...|. +|+++.++.....+.
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga---~V~~~~g~~~~~~~~------------------ 241 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGA---DVTLITGPVSLLTPP------------------ 241 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCC---EEEEeCCCCccCCCC------------------
Confidence 56899999998 47899999999999976 566666553221000
Q ss_pred CCccc-CCCCCCCCCCHHHH-HH----HhcCccEEEEccccccc
Q psy16252 159 STSKE-SAQAPDLGLSPDDK-RL----VTSKVNLVFHCAATLRF 196 (545)
Q Consensus 159 ~~~~~-Dl~~~~lgl~~~~~-~~----l~~~vd~Vih~Aa~~~~ 196 (545)
.... |+. +.+++ +. +..++|++||+||...+
T Consensus 242 -~~~~~~v~------~~~~~~~~~~~~~~~~~D~~i~~Aavsd~ 278 (390)
T TIGR00521 242 -GVKSIKVS------TAEEMLEAALNELAKDFDIFISAAAVADF 278 (390)
T ss_pred -CcEEEEec------cHHHHHHHHHHhhcccCCEEEEccccccc
Confidence 0000 554 33444 32 33478999999999765
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.019 Score=56.50 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=31.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.++++++|+|| |.+|++++..|.+.| .++|+++.|+.
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G--~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDG--AKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEeCCc
Confidence 35789999999 899999999999885 45788888874
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.16 Score=50.94 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=29.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+|.|+||||++|..|++.|.++++.+..+..+...
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~ 40 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS 40 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc
Confidence 689999999999999999999766666676666443
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.014 Score=58.74 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=33.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
+++|+|.||||++|..|++.|.++++.+.++..+.|...
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~ 39 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARS 39 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcccc
Confidence 368999999999999999999998766667888887643
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.16 Score=51.37 Aligned_cols=182 Identities=17% Similarity=0.188 Sum_probs=86.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCC-CCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAK-KNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~-~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
++|.|.||||++|..+++.|.+. +.+ ++..+ .+.. .+.. +... +..+.. ..++. ++..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~-el~~l~~s~~sagk~----~~~~----~~~l~~-----~~~~~-----~~~~ 60 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEV-EITYLVSSRESAGKP----VSEV----HPHLRG-----LVDLN-----LEPI 60 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCc-eEEEEeccchhcCCC----hHHh----Cccccc-----cCCce-----eecC
Confidence 47999999999999999999876 444 45533 3332 2211 1110 100000 00111 0111
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSE 255 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~ 255 (545)
+..++.+++|+||-|.... ....++..+.+. + +++|=.|+.+-..+.. .-|+.|..+....+
T Consensus 61 ~~~~~~~~~DvVf~alP~~---------------~s~~~~~~~~~~-G-~~VIDlS~~fR~~~~~-~y~~~y~~~~~~~~ 122 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHG---------------VSAELAPELLAA-G-VKVIDLSADFRLKDPE-VYEKWYGFEHAGPE 122 (346)
T ss_pred CHHHhhcCCCEEEECCCch---------------HHHHHHHHHHhC-C-CEEEeCChhhhcCChh-hhHHhcCCCCCChh
Confidence 2334445899999887642 123455555554 4 6788899887554311 12233332222111
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCC---CEEEEccceeeccCCC
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFF---PVCIFRPSIVISTWKE 318 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l---~~~i~Rp~~i~g~~~~ 318 (545)
++...---+.+-.-+.+.....-..|+.|+.+=.++=.=+.+.. .+ .++|-=...+.|.+..
T Consensus 123 ~~~~~~y~lPE~n~~~i~~~~iianPgC~~t~~~l~L~PL~~~~-~i~~~~i~v~~~sgvSGaG~~ 187 (346)
T TIGR01850 123 LLQEAVYGLPELHREEIKGARLIANPGCYPTATLLALAPLLKEG-LIDPTSIIVDAKSGVSGAGRK 187 (346)
T ss_pred hhcCceEECCccCHHHhCCCcEEEcCCcHHHHHHHHHHHHHHcC-CCCCCcEEEEEEEECcccCcC
Confidence 11111000111111111112233557888887776655555542 23 2444444555555443
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.027 Score=54.51 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=50.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCC-CHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGL-SPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl-~~~~ 176 (545)
..++|-|||||.|..++++|.++|.. - ..-.|+. ....++...+ +..-+.+.+ .+..
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~--~-aLAgRs~---~kl~~l~~~L----------------G~~~~~~p~~~p~~ 64 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLT--A-ALAGRSS---AKLDALRASL----------------GPEAAVFPLGVPAA 64 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCc--h-hhccCCH---HHHHHHHHhc----------------CccccccCCCCHHH
Confidence 56899999999999999999998643 2 2234442 1223333222 222233333 3788
Q ss_pred HHHHhcCccEEEEccccc
Q psy16252 177 KRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~ 194 (545)
+++++..+.+|+||+|+-
T Consensus 65 ~~~~~~~~~VVlncvGPy 82 (382)
T COG3268 65 LEAMASRTQVVLNCVGPY 82 (382)
T ss_pred HHHHHhcceEEEeccccc
Confidence 899999999999999974
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.081 Score=52.41 Aligned_cols=107 Identities=13% Similarity=0.048 Sum_probs=69.9
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCC--CC----
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDL--GL---- 172 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~l--gl---- 172 (545)
+|.|+||+|.+|.+++..|+..+. +.++.++.+.+ .. .+.+ |+.+... .+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~-~~elvL~Di~~-a~--g~a~--------------------DL~~~~~~~~i~~~~ 56 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY-VSELSLYDIAG-AA--GVAA--------------------DLSHIPTAASVKGFS 56 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC-CcEEEEecCCC-Cc--EEEc--------------------hhhcCCcCceEEEec
Confidence 488999999999999999887643 45787777755 11 1111 2221110 00
Q ss_pred CHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
+.+++.+.++++|+||-+||..+ ...+..+....|+.-.+.+.+...+. ..+.++.+
T Consensus 57 ~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiiv 114 (312)
T TIGR01772 57 GEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILV 114 (312)
T ss_pred CCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEE
Confidence 01124456789999999999754 33455677899999999999888776 44444433
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.078 Score=53.27 Aligned_cols=125 Identities=19% Similarity=0.202 Sum_probs=71.3
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH-----hh----HH-H-HHHhhhhcCCCc
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID-----KM----LD-T-VAISLKFTCSTS 161 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-----~~----~~-~-~~~~~~~~~~~~ 161 (545)
+.++.++|+|.|+ |.||+.++..|.+.| +.+|..+.+..-..+...|.. .+ .+ . ....++.-++.+
T Consensus 20 ~~L~~~~VlVvG~-GglGs~va~~La~aG--vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v 96 (339)
T PRK07688 20 QKLREKHVLIIGA-GALGTANAEMLVRAG--VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDV 96 (339)
T ss_pred HHhcCCcEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCc
Confidence 3356789999997 999999999999985 568888877542221111110 00 00 0 112222222211
Q ss_pred ccCCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 162 KESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 162 ~~Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
--.....+ ++.+...++++++|+||.+.... ..-..+.++|.+. + +++|+.|+...+|.
T Consensus 97 ~v~~~~~~--~~~~~~~~~~~~~DlVid~~Dn~--------------~~r~~ln~~~~~~-~-iP~i~~~~~g~~G~ 155 (339)
T PRK07688 97 RVEAIVQD--VTAEELEELVTGVDLIIDATDNF--------------ETRFIVNDAAQKY-G-IPWIYGACVGSYGL 155 (339)
T ss_pred EEEEEecc--CCHHHHHHHHcCCCEEEEcCCCH--------------HHHHHHHHHHHHh-C-CCEEEEeeeeeeeE
Confidence 10011111 24566778889999999885421 1112455777776 4 57899888766654
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.1 Score=52.09 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=70.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcC-----EEEEEecCCCCC-CHHH--HHHhhHHHHHHhhhhcCCCcccCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVK-----TIYVIVRAKKNQ-SPQQ--RIDKMLDTVAISLKFTCSTSKESAQAP 168 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~-----~V~~l~R~~~~~-~~~~--rl~~~~~~~~~~~~~~~~~~~~Dl~~~ 168 (545)
.++|.|+||+|.+|..++..|+..+. .. .++.+.+.+... ...+ .+.+. .+.... +..
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~-~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~---~~~~~~--------~~~-- 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDM-LGKDQPVILQLLEIPPALKALEGVVMELDDC---AFPLLA--------GVV-- 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhh-cCCCCccEEEEEecCCcccccceeehhhhhh---hhhhcC--------CcE--
Confidence 47899999999999999999887532 23 677777643211 0001 11110 000000 100
Q ss_pred CCCCCHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCce-EEEEe
Q psy16252 169 DLGLSPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKM-FTYVS 231 (545)
Q Consensus 169 ~lgl~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~-~v~vS 231 (545)
....+ .+.++++|+||-+||..+ ..++..+....|+.-.+.+.+...+....+. ++.+|
T Consensus 70 ---i~~~~-y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 70 ---ITDDP-NVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred ---EecCh-HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 01122 344579999999999754 3456677889999999999988888422334 44444
|
|
| >KOG1494|consensus | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.2 Score=47.46 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=77.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe-cCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCC-----
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV-RAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPD----- 169 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~-R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~----- 169 (545)
++-+|.|.||.|.||+-|.- |++..|.|....... +..++..+ |++.-+
T Consensus 27 ~~~KVAvlGAaGGIGQPLSL-LlK~np~Vs~LaLYDi~~~~GVaa------------------------DlSHI~T~s~V 81 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSL-LLKLNPLVSELALYDIANTPGVAA------------------------DLSHINTNSSV 81 (345)
T ss_pred CcceEEEEecCCccCccHHH-HHhcCcccceeeeeecccCCcccc------------------------cccccCCCCce
Confidence 45789999999999999865 445557666544332 22222211 332221
Q ss_pred CCC-CHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccc
Q psy16252 170 LGL-SPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 170 lgl-~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~ 236 (545)
.|. .++.++..++++|+|+--||..+ .....++++++|-.-.+.|..++.++ ..+.+|.+=|--|+
T Consensus 82 ~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~-cP~A~i~vIsNPVN 149 (345)
T KOG1494|consen 82 VGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKC-CPNALILVISNPVN 149 (345)
T ss_pred eccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhh-CccceeEeecCccc
Confidence 122 35689999999999999999865 33455788999999999999988876 44556665554444
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.034 Score=47.89 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=50.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
+++++|+|.|| |..|+.++..|...| +.+|++..|+. +|.+.+... +......+. +.
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g--~~~i~i~nRt~------~ra~~l~~~----~~~~~~~~~----------~~ 66 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALG--AKEITIVNRTP------ERAEALAEE----FGGVNIEAI----------PL 66 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTT--SSEEEEEESSH------HHHHHHHHH----HTGCSEEEE----------EG
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcC--CCEEEEEECCH------HHHHHHHHH----cCcccccee----------eH
Confidence 56899999997 889999999999984 56899999973 333332221 110011011 22
Q ss_pred HHHHHHhcCccEEEEcccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
+++.....++|+||++.+...
T Consensus 67 ~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 67 EDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp GGHCHHHHTESEEEE-SSTTS
T ss_pred HHHHHHHhhCCeEEEecCCCC
Confidence 345567789999999977643
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=51.40 Aligned_cols=126 Identities=20% Similarity=0.216 Sum_probs=69.9
Q ss_pred hhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH-----hh---HHH---HHHhhhhcCCC
Q psy16252 92 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID-----KM---LDT---VAISLKFTCST 160 (545)
Q Consensus 92 ~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-----~~---~~~---~~~~~~~~~~~ 160 (545)
++.+++++|+|.|+ |.+|+++++.|.+.| +.++..+.+..-..+...|.. .. ..+ ..+.++.-++.
T Consensus 19 Q~~L~~~~VlIiG~-GglGs~va~~La~aG--vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~ 95 (338)
T PRK12475 19 QRKIREKHVLIVGA-GALGAANAEALVRAG--IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSE 95 (338)
T ss_pred HHhhcCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCC
Confidence 34466799999997 669999999999985 567887777643222111110 00 000 11222222221
Q ss_pred cccCCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 161 SKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 161 ~~~Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
+--.....+ ++.+.++++++++|+||.+... +.. - ..+-++|.+. + .++|+.+....+|.
T Consensus 96 v~i~~~~~~--~~~~~~~~~~~~~DlVid~~D~--~~~----r--------~~in~~~~~~-~-ip~i~~~~~g~~G~ 155 (338)
T PRK12475 96 VEIVPVVTD--VTVEELEELVKEVDLIIDATDN--FDT----R--------LLINDLSQKY-N-IPWIYGGCVGSYGV 155 (338)
T ss_pred cEEEEEecc--CCHHHHHHHhcCCCEEEEcCCC--HHH----H--------HHHHHHHHHc-C-CCEEEEEecccEEE
Confidence 110000001 2445678888999999988642 111 1 1244667765 4 46888887765553
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.16 Score=50.53 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=70.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
++++|.|+|| |.+|..++..|+..+. ..+++.+.+......+ ...-+.+..... ... .+. ..
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~-~~el~L~D~~~~~~~g---~~~Dl~~~~~~~--~~~----~i~-------~~ 66 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGI-ADELVIIDINKEKAEG---DAMDLSHAVPFT--SPT----KIY-------AG 66 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCCchhHH---HHHHHHhhcccc--CCe----EEE-------eC
Confidence 4689999998 9999999999988742 3478888775432211 111111100000 000 111 12
Q ss_pred HHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEE
Q psy16252 176 DKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTY 229 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~ 229 (545)
+++. ++++|+||-+||..+ ...+..+....|..-.+.+++...+. +.+.++.
T Consensus 67 ~~~~-~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vi 119 (315)
T PRK00066 67 DYSD-CKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFL 119 (315)
T ss_pred CHHH-hCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEE
Confidence 3444 589999999999754 23455677899999999988888775 3344433
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.2 Score=49.21 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=71.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcC-EEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVK-TIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~-~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
++|.|+|| |.+|+.++..|+.++ +. .++.+.+....... ..++ +.+ ...+.. +.. ..-+ .
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~--~~~el~LiDi~~~~~~G-~a~D--L~~--------~~~~~~~~~~---i~~~-~ 62 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQG--LGSELVLIDINEEKAEG-VALD--LSH--------AAAPLGSDVK---ITGD-G 62 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhccc--ccceEEEEEcccccccc-hhcc--hhh--------cchhccCceE---EecC-C
Confidence 47899999 999999999997764 34 78888777332211 1110 000 000000 110 0001 1
Q ss_pred HHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
++ +.++++|+|+-+||..+- ..+..+++..|..-...+.+...+. ..+.++.+-|
T Consensus 63 ~y-~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvt 118 (313)
T COG0039 63 DY-EDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVT 118 (313)
T ss_pred Ch-hhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEec
Confidence 22 345799999999997653 3456778899999999999888876 4456666655
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.7 Score=45.64 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=89.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC-CCCCHHHHHHhhHHHHHHhhhhcCCCccc--CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK-KNQSPQQRIDKMLDTVAISLKFTCSTSKE--SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~~~~~~~~~~~~~--Dl~~~~lgl~ 173 (545)
.++|.|.||||+.|..|++.|..+ +++. +.+...+. .+... .+. .+.... |+.... ++
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve-~~~~ss~~~~g~~~----~~~-----------~p~l~g~~~l~~~~--~~ 62 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-PDVE-LILISSRERAGKPV----SDV-----------HPNLRGLVDLPFQT--ID 62 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-CCeE-EEEeechhhcCCch----HHh-----------Cccccccccccccc--CC
Confidence 378999999999999999999987 6675 55443332 22221 111 111110 222111 12
Q ss_pred HHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCH
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHY 253 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~ 253 (545)
.+.+ ..+++|+||-+-.... ...++...... +++ +|=+|+.+-..+. .+-|+.|..+...
T Consensus 63 ~~~~--~~~~~DvvFlalPhg~---------------s~~~v~~l~~~-g~~-VIDLSadfR~~d~-~~ye~~Yg~~h~~ 122 (349)
T COG0002 63 PEKI--ELDECDVVFLALPHGV---------------SAELVPELLEA-GCK-VIDLSADFRLKDP-EVYEKWYGFTHAG 122 (349)
T ss_pred hhhh--hcccCCEEEEecCchh---------------HHHHHHHHHhC-CCe-EEECCcccccCCH-HHHHHhhCCCCCC
Confidence 2222 3457999998754311 11233333332 444 8888888755422 2334455444322
Q ss_pred HHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeeccCCCCC
Q psy16252 254 SELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVISTWKEPI 320 (545)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~~~~~~ 320 (545)
.++++....-+.|-.-+++...-.-..|..|.-.-.++=.=+.+.. .+.+++|---+.+.|.+..+.
T Consensus 123 ~~~l~~avYGLpEl~~e~i~~A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s 192 (349)
T COG0002 123 PELLEDAVYGLPELHREKIRGAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKAS 192 (349)
T ss_pred chhhhcccccCcccCHHHHhcCCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCcc
Confidence 2221111000111111222222223445667655555444444432 344556666677777666553
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.15 Score=48.74 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=71.3
Q ss_pred hhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHh----hHH----H-HHHhhhhcCCCcc
Q psy16252 92 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK----MLD----T-VAISLKFTCSTSK 162 (545)
Q Consensus 92 ~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~----~~~----~-~~~~~~~~~~~~~ 162 (545)
++.+++++|+|.|+ |.+|+.++..|.+.| +.++..+....-..+...|..- ..+ . ....++.-++..
T Consensus 27 Q~~L~~~~VliiG~-GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v- 102 (245)
T PRK05690 27 QEKLKAARVLVVGL-GGLGCAASQYLAAAG--VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHI- 102 (245)
T ss_pred HHHhcCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCC-
Confidence 34466799999998 999999999999985 6688877665433333322110 000 0 122333222211
Q ss_pred cCCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccccc
Q psy16252 163 ESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 163 ~Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~ 237 (545)
. +....-.++.+...++++++|+||.+.... +. -..+-++|.+. + +++|+.++....|
T Consensus 103 ~-i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~------~~--------r~~ln~~~~~~-~-ip~v~~~~~g~~G 160 (245)
T PRK05690 103 A-IETINARLDDDELAALIAGHDLVLDCTDNV------AT--------RNQLNRACFAA-K-KPLVSGAAIRMEG 160 (245)
T ss_pred E-EEEEeccCCHHHHHHHHhcCCEEEecCCCH------HH--------HHHHHHHHHHh-C-CEEEEeeeccCCc
Confidence 1 110111135566777889999999986432 11 12345677775 4 5688766654443
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.41 Score=44.30 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=71.2
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHh--------hHHH-HHHhhhhcCCCccc
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK--------MLDT-VAISLKFTCSTSKE 163 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~--------~~~~-~~~~~~~~~~~~~~ 163 (545)
+.+++++|+|.| .|.+|+.++..|.+.| +.++..+.+..-..+...|..- .... ....++.-++..--
T Consensus 17 ~kl~~~~VlviG-~GglGs~ia~~La~~G--v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i 93 (202)
T TIGR02356 17 QRLLNSHVLIIG-AGGLGSPAALYLAGAG--VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQV 93 (202)
T ss_pred HHhcCCCEEEEC-CCHHHHHHHHHHHHcC--CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEE
Confidence 345678999999 5889999999999985 6688888776433322222110 0000 12222222221100
Q ss_pred CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 164 SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
+.... .++.+.+.++++++|+||.+.... +. -..+-++|++. + +++|+.++.+.+|.
T Consensus 94 ~~~~~--~i~~~~~~~~~~~~D~Vi~~~d~~------~~--------r~~l~~~~~~~-~-ip~i~~~~~g~~G~ 150 (202)
T TIGR02356 94 TALKE--RVTAENLELLINNVDLVLDCTDNF------AT--------RYLINDACVAL-G-TPLISAAVVGFGGQ 150 (202)
T ss_pred EEehh--cCCHHHHHHHHhCCCEEEECCCCH------HH--------HHHHHHHHHHc-C-CCEEEEEeccCeEE
Confidence 11111 124566778889999999886432 11 12355677775 4 56888887655543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.66 Score=46.81 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=27.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
++|+|.||||++|+.+++.|.+. ++ .++.++.+.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~-p~-~elv~v~~~ 36 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH-PE-VEIVAVTSR 36 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC-CC-ceEEEEECc
Confidence 78999999999999999999876 33 356666653
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.32 Score=51.21 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=29.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
+++|+|+|+|+++ +|..+++.|++.|+ .|.+..+.
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~---~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGA---KVILTDEK 37 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCC---EEEEEeCC
Confidence 3579999999988 99999999999986 56666664
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.052 Score=54.59 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=29.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
..+|.|.||||++|..|++.|.+++|.+..+..+...
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~ 43 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA 43 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc
Confidence 4789999999999999999998876655667666443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.4 Score=47.89 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=70.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
+.++|.|.|| |.+|..++..|...+ +..|+.+.+++....+ +.++. ... ........ .+. ...
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~--~~~l~L~Di~~~~~~g-~~lDl--~~~-~~~~~~~~----~i~------~~~ 66 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKN--LGDVVLYDVIKGVPQG-KALDL--KHF-STLVGSNI----NIL------GTN 66 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCC--CCeEEEEECCCccchh-HHHHH--hhh-ccccCCCe----EEE------eCC
Confidence 4579999997 999999998888764 3467777776543221 11111 000 00000000 111 012
Q ss_pred HHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCce-EEEEe
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKM-FTYVS 231 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~-~v~vS 231 (545)
+++ .++++|+||-+|+.... .....+....|..-.+.+++...+. ..+. ++.+|
T Consensus 67 d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvs 122 (319)
T PTZ00117 67 NYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVT 122 (319)
T ss_pred CHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 455 55899999999987542 3345667788988888888877775 4444 55554
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.076 Score=44.91 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=28.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
++|.|.|++|-+|+.+++.+.+. ++..-+-++.|.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCC
Confidence 57999999999999999999995 3444455556665
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.34 Score=48.12 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=69.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
++|.|.|+ |.+|+.++..|+..|. ..+|+++.|..... +.+..-+.. .+. . .. ... . ...+
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~-~~ei~l~D~~~~~~---~~~a~dL~~~~~~-~---~~----~~~---i--~~~~ 62 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGI-ADELVLIDINEEKA---EGEALDLEDALAF-L---PS----PVK---I--KAGD 62 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcchh---hHhHhhHHHHhhc-c---CC----CeE---E--EcCC
Confidence 36899996 9999999999998753 23788888865432 222211111 000 0 00 000 0 0112
Q ss_pred HHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
++. +.++|+||.+++..+- ..+..+....|..-.+.+.+..++. ..+.++.+-|
T Consensus 63 ~~~-l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvs 117 (306)
T cd05291 63 YSD-CKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVAS 117 (306)
T ss_pred HHH-hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 333 5799999999997542 3345677899999999999988885 4444444333
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.17 Score=48.78 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=25.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
++|.|+|++|.+|+.+++.+.+. +++.-|.+..+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~ 36 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRP 36 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence 68999999999999999888765 344333334444
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.4 Score=45.75 Aligned_cols=121 Identities=14% Similarity=0.071 Sum_probs=69.3
Q ss_pred CcEEEEeccccccchHHHHHHHhh---CCCcC-EEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRS---FPRVK-TIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAPDLG 171 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~---g~~v~-~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~~lg 171 (545)
.-+|+||||+|.||-+|+-.+.+= |++-. .++++..+... ...+...--+.+ .|..++ .. .++
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~-~~l~G~amDL~D~a~pll~--~v----~i~----- 190 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENL-EKLKGLVMEVEDLAFPLLR--GI----SVT----- 190 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCch-hhHHHHHHHHHHhHHhhcC--Cc----EEE-----
Confidence 468999999999999999988762 32211 24444443221 111111111111 111111 00 111
Q ss_pred CCHHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccC-CceEEEEec
Q psy16252 172 LSPDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKN-LKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~~~~v~vSS 232 (545)
..-.+.++++|+||-+||..+- ..+..+..+.|+.-.+.+.+...+... -.+++.+.|
T Consensus 191 ---~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 191 ---TDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred ---ECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 1124566899999999997542 345567789999999999988887533 134444443
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.22 Score=51.53 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=70.6
Q ss_pred chhhhhcCcEEEEeccccccchHHHHHHHhh-------CCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCc
Q psy16252 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRS-------FPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTS 161 (545)
Q Consensus 90 ~~~~~~~~~~VlITGatGflG~~l~~~Ll~~-------g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~ 161 (545)
....+.+--+|.|+||+|.+|.+++..|+.. +. ..+++.+.+....... +.+ -+.+ .+..+.
T Consensus 93 ~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-~~eLvliD~~~~~a~G-~am--DL~daa~~~~~------ 162 (444)
T PLN00112 93 ETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPI-ALKLLGSERSKQALEG-VAM--ELEDSLYPLLR------ 162 (444)
T ss_pred hhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCc-ccEEEEEcCCcchhHH-HHH--HHHHhhhhhcC------
Confidence 3444555678999999999999999999875 21 2357777665443211 111 1111 111110
Q ss_pred ccCCCCCCCCCCHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHH
Q psy16252 162 KESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQ 220 (545)
Q Consensus 162 ~~Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~ 220 (545)
++. ....++ +.++++|+||-+||..+ ...+..+..+.|+.-.+.+.+...+
T Consensus 163 --~v~-----i~~~~y-e~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~ 214 (444)
T PLN00112 163 --EVS-----IGIDPY-EVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNE 214 (444)
T ss_pred --ceE-----EecCCH-HHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 110 001123 44579999999999854 2345567889999999999998888
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.23 Score=47.34 Aligned_cols=124 Identities=11% Similarity=0.075 Sum_probs=70.8
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH----hhHH----H-HHHhhhhcCCCccc
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID----KMLD----T-VAISLKFTCSTSKE 163 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~----~~~~----~-~~~~~~~~~~~~~~ 163 (545)
+.+++.+|+|.|+ |.+|+.++..|.+.| +.++..+.+..-..+...|.. ...+ . ....++.-++..-
T Consensus 20 ~~L~~~~VlvvG~-GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~- 95 (240)
T TIGR02355 20 EALKASRVLIVGL-GGLGCAASQYLAAAG--VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIA- 95 (240)
T ss_pred HHHhCCcEEEECc-CHHHHHHHHHHHHcC--CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcE-
Confidence 3456789999995 789999999999985 678888776644333222211 0000 0 1122222222111
Q ss_pred CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccccc
Q psy16252 164 SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~ 237 (545)
+....-.++.+...+++++.|+||.+..... . ...+-++|.+. + ++||+.++....|
T Consensus 96 -i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~------~--------r~~ln~~~~~~-~-ip~v~~~~~g~~G 152 (240)
T TIGR02355 96 -INPINAKLDDAELAALIAEHDIVVDCTDNVE------V--------RNQLNRQCFAA-K-VPLVSGAAIRMEG 152 (240)
T ss_pred -EEEEeccCCHHHHHHHhhcCCEEEEcCCCHH------H--------HHHHHHHHHHc-C-CCEEEEEecccEe
Confidence 1111112355667788899999999865321 1 12345677775 4 5688877665444
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.99 Score=44.37 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=25.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEE
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI 130 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l 130 (545)
-+|.|.||||+.|..|++.|..+ |++. +..+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-P~~e-l~~l 32 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-DDIE-LLSI 32 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-CCeE-EEEE
Confidence 36999999999999999999987 6664 4443
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.17 Score=49.13 Aligned_cols=125 Identities=11% Similarity=0.055 Sum_probs=68.4
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHh----hHH----H-HHHhhhhcCCCccc
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK----MLD----T-VAISLKFTCSTSKE 163 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~----~~~----~-~~~~~~~~~~~~~~ 163 (545)
+.+++.+|+|.|+ |.+|+.++..|.+.| |.++..+....-..+...|..- ..+ . ....++.-++..
T Consensus 23 ~kL~~s~VlIvG~-GGLGs~va~~LA~aG--VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v-- 97 (287)
T PRK08223 23 QRLRNSRVAIAGL-GGVGGIHLLTLARLG--IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPEL-- 97 (287)
T ss_pred HHHhcCCEEEECC-CHHHHHHHHHHHHhC--CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCC--
Confidence 3356789999996 779999999999985 6688877665433322222110 000 0 112222222211
Q ss_pred CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccc
Q psy16252 164 SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~ 236 (545)
++..-.-.++++...++++++|+|+.+.-..++.. -..+-++|.+. + +++|+.|.....
T Consensus 98 ~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~------------r~~ln~~c~~~-~-iP~V~~~~~g~~ 156 (287)
T PRK08223 98 EIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDA------------RRLVFAACQQR-G-IPALTAAPLGMG 156 (287)
T ss_pred EEEEEecccCccCHHHHHhCCCEEEECCCCCcHHH------------HHHHHHHHHHc-C-CCEEEEeccCCe
Confidence 11111112355567788889999986543221111 12455677776 4 568887665433
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.56 Score=47.80 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=67.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcC---EEEE-E---ecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVK---TIYV-I---VRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAP 168 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~---~V~~-l---~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~ 168 (545)
.-+|.|+||+|.+|.+++..|+..+- .. .|.. | .+..+.. +...--+.+ .+..+. ++.
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l-~~~~~ei~L~L~diD~~~~~a---~g~a~DL~d~a~~~~~--------~v~-- 109 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEV-FGQDQPIALKLLGSERSKEAL---EGVAMELEDSLYPLLR--------EVS-- 109 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccc-cCCCCceEEEEeccCccchhh---hHHHHHHHHhhhhhcC--------ceE--
Confidence 47899999999999999999987642 12 1222 2 3332211 111111111 111110 110
Q ss_pred CCCCCHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 169 DLGLSPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 169 ~lgl~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
....++ +.++++|+||-+||..+ ..++..+....|+.-.+.+.+...+..+...++.+-|
T Consensus 110 ---i~~~~y-~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 110 ---IGIDPY-EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred ---EecCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 001122 44589999999999864 2345567789999999999998888423444444433
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.05 Score=54.74 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=30.2
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
+|+|.||||++|..|++.|.++++.+.++..+.+..+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~ 37 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRS 37 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecccc
Confidence 4899999999999999999887776667776766543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.56 Score=43.76 Aligned_cols=127 Identities=14% Similarity=0.086 Sum_probs=68.6
Q ss_pred hhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH---hhH----HH-HHHhhhhcCCCccc
Q psy16252 92 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID---KML----DT-VAISLKFTCSTSKE 163 (545)
Q Consensus 92 ~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~---~~~----~~-~~~~~~~~~~~~~~ 163 (545)
++.++..+|+|.|+ |.+|+.++..|.+.| +.++..+....-..+...|.. ... .. .-..++.-++..
T Consensus 23 q~~L~~~~V~ViG~-GglGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v-- 97 (212)
T PRK08644 23 LEKLKKAKVGIAGA-GGLGSNIAVALARSG--VGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFV-- 97 (212)
T ss_pred HHHHhCCCEEEECc-CHHHHHHHHHHHHcC--CCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCC--
Confidence 34466789999995 889999999999985 567887777632222111110 000 00 112222212211
Q ss_pred CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 164 SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
++....-.++.+...++++++|+||.|.-.. + ....+.+.|.+..+ +.+|+.|....++.
T Consensus 98 ~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~------~--------~r~~l~~~~~~~~~-~p~I~~~~~~~~~~ 157 (212)
T PRK08644 98 EIEAHNEKIDEDNIEELFKDCDIVVEAFDNA------E--------TKAMLVETVLEHPG-KKLVAASGMAGYGD 157 (212)
T ss_pred EEEEEeeecCHHHHHHHHcCCCEEEECCCCH------H--------HHHHHHHHHHHhCC-CCEEEeehhhccCC
Confidence 1111111134556777888999999884321 1 11244556666412 57888776655544
|
|
| >KOG1496|consensus | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.74 Score=42.66 Aligned_cols=99 Identities=21% Similarity=0.188 Sum_probs=53.4
Q ss_pred cEEEEeccccccchHHHHHHHhh---CCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCCCCCCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRS---FPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAPDLGLS 173 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~---g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~~lgl~ 173 (545)
-+|+||||.|.||-+|+-.+.+- |++--.+..|.--+......+.+.-.+.. .|..++.- +.+
T Consensus 5 irVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~V------vat------- 71 (332)
T KOG1496|consen 5 IRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGV------VAT------- 71 (332)
T ss_pred eEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhh------hcc-------
Confidence 58999999999999999988762 22211222222222222222322222222 22222100 111
Q ss_pred HHHHHHHhcCccEEEEccccccch-HHHHHHHHHhHHH
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFD-EELKEAIRTNMCA 210 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~-~~~~~~~~~Nv~g 210 (545)
.+-.+.++++|+.|-.+|..+-. ...++....||.-
T Consensus 72 -td~~~afkdv~~ailvGa~PR~eGMERkDll~~NvkI 108 (332)
T KOG1496|consen 72 -TDEVEAFKDVDVAILVGAMPRREGMERKDLLSANVKI 108 (332)
T ss_pred -cChhhhhccCcEEEEeccccCcccchhhhHHhhccee
Confidence 23456778999999998876532 2235566777764
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.26 Score=45.51 Aligned_cols=123 Identities=13% Similarity=0.106 Sum_probs=69.5
Q ss_pred hhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHH-------Hh---hHHH-HHHhhhhcCCC
Q psy16252 92 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRI-------DK---MLDT-VAISLKFTCST 160 (545)
Q Consensus 92 ~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-------~~---~~~~-~~~~~~~~~~~ 160 (545)
.+..++.+|+|.|++| +|.++++.|...| |.++..+....-..+...|. .. .... ..+.++.-++.
T Consensus 14 q~~L~~s~VlviG~gg-lGsevak~L~~~G--Vg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~ 90 (198)
T cd01485 14 QNKLRSAKVLIIGAGA-LGAEIAKNLVLAG--IDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPN 90 (198)
T ss_pred HHHHhhCcEEEECCCH-HHHHHHHHHHHcC--CCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCC
Confidence 3345678999999887 9999999999984 67888876653322111111 00 0001 22233333332
Q ss_pred c--cc---CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccc
Q psy16252 161 S--KE---SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFS 235 (545)
Q Consensus 161 ~--~~---Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v 235 (545)
. .. ++.. ..+...++++++|+||.+... .... ..+-++|++. + .+|++.++.+.
T Consensus 91 v~i~~~~~~~~~-----~~~~~~~~~~~~dvVi~~~d~------~~~~--------~~ln~~c~~~-~-ip~i~~~~~G~ 149 (198)
T cd01485 91 VKLSIVEEDSLS-----NDSNIEEYLQKFTLVIATEEN------YERT--------AKVNDVCRKH-H-IPFISCATYGL 149 (198)
T ss_pred CEEEEEeccccc-----chhhHHHHHhCCCEEEECCCC------HHHH--------HHHHHHHHHc-C-CCEEEEEeecC
Confidence 1 11 2210 134456677889999976332 1111 2345778875 5 47888888766
Q ss_pred ccC
Q psy16252 236 NSY 238 (545)
Q Consensus 236 ~~~ 238 (545)
+|.
T Consensus 150 ~G~ 152 (198)
T cd01485 150 IGY 152 (198)
T ss_pred EEE
Confidence 654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.49 Score=40.60 Aligned_cols=120 Identities=17% Similarity=0.183 Sum_probs=65.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHH--------HHhhHHH-HHHhhhhcCCCcccCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQR--------IDKMLDT-VAISLKFTCSTSKESAQA 167 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~r--------l~~~~~~-~~~~~~~~~~~~~~Dl~~ 167 (545)
+++|+|.|+ |.+|+.++..|.+.| +.++..+....-..+...| +...... +-..++..++..- +..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~G--v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~--v~~ 76 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSG--VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVE--VEA 76 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHT--TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSE--EEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhC--CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCcee--eee
Confidence 578999995 889999999999995 5677777655322111111 0000001 2222322222110 100
Q ss_pred CCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccccc
Q psy16252 168 PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 168 ~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~ 237 (545)
-...++.+...++++++|+||.+..... ....+.+.|++. + +++|+.++....|
T Consensus 77 ~~~~~~~~~~~~~~~~~d~vi~~~d~~~--------------~~~~l~~~~~~~-~-~p~i~~~~~g~~G 130 (135)
T PF00899_consen 77 IPEKIDEENIEELLKDYDIVIDCVDSLA--------------ARLLLNEICREY-G-IPFIDAGVNGFYG 130 (135)
T ss_dssp EESHCSHHHHHHHHHTSSEEEEESSSHH--------------HHHHHHHHHHHT-T--EEEEEEEETTEE
T ss_pred eecccccccccccccCCCEEEEecCCHH--------------HHHHHHHHHHHc-C-CCEEEEEeecCEE
Confidence 0011255677888889999999865411 112456677775 4 4788888775443
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.62 Score=47.73 Aligned_cols=124 Identities=19% Similarity=0.109 Sum_probs=69.1
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH--------hhHHH-HHHhhhhcCCCccc
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID--------KMLDT-VAISLKFTCSTSKE 163 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~--------~~~~~-~~~~~~~~~~~~~~ 163 (545)
..+++++|+|.|+ |.+|++++..|.+.| +.++..+.+..-..+...|.. ..... .-..++.-++..-
T Consensus 131 ~~l~~~~VlvvG~-GG~Gs~ia~~La~~G--vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~- 206 (376)
T PRK08762 131 RRLLEARVLLIGA-GGLGSPAALYLAAAG--VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQ- 206 (376)
T ss_pred HHHhcCcEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCE-
Confidence 3456789999986 779999999999985 668888877632222111110 00000 1122222222110
Q ss_pred CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccccc
Q psy16252 164 SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~ 237 (545)
+....-.++.+.+..+++++|+||.+..... . -..+-++|.+. + .+||+.++....+
T Consensus 207 -v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~------~--------r~~ln~~~~~~-~-ip~i~~~~~g~~g 263 (376)
T PRK08762 207 -VEAVQERVTSDNVEALLQDVDVVVDGADNFP------T--------RYLLNDACVKL-G-KPLVYGAVFRFEG 263 (376)
T ss_pred -EEEEeccCChHHHHHHHhCCCEEEECCCCHH------H--------HHHHHHHHHHc-C-CCEEEEEeccCEE
Confidence 0000011244567778889999999875421 0 11345677775 4 5788887665444
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.23 Score=54.72 Aligned_cols=123 Identities=11% Similarity=0.033 Sum_probs=72.9
Q ss_pred hhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH--------HHHhhhhcCCCcc
Q psy16252 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT--------VAISLKFTCSTSK 162 (545)
Q Consensus 91 ~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~--------~~~~~~~~~~~~~ 162 (545)
-++.+++.+|+|.|+ | +|++++..|.+.|- +.+++.+....-..+...|+...... .-..+..-++. +
T Consensus 101 ~Q~~L~~~~V~IvG~-G-lGs~~a~~LaraGv-vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~-i 176 (722)
T PRK07877 101 EQERLGRLRIGVVGL-S-VGHAIAHTLAAEGL-CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPY-L 176 (722)
T ss_pred HHHHHhcCCEEEEEe-c-HHHHHHHHHHHccC-CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCC-C
Confidence 344567899999999 8 99999999999851 26787776665444545553110000 11122222221 1
Q ss_pred cCCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccc
Q psy16252 163 ESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAF 234 (545)
Q Consensus 163 ~Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~ 234 (545)
++..-.-+++.+.+.++++++|+||.|.-.. . .-..+-++|.+. + +.+|+.|+..
T Consensus 177 -~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~--~------------~R~~ln~~a~~~-~-iP~i~~~~~~ 231 (722)
T PRK07877 177 -PVEVFTDGLTEDNVDAFLDGLDVVVEECDSL--D------------VKVLLREAARAR-R-IPVLMATSDR 231 (722)
T ss_pred -EEEEEeccCCHHHHHHHhcCCCEEEECCCCH--H------------HHHHHHHHHHHc-C-CCEEEEcCCC
Confidence 2222223357788999999999999986431 1 111344667765 4 4677777544
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.9 Score=42.67 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=26.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEec
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R 132 (545)
.+|.|.||||++|..|++.|.++ +++ ++..+..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h-p~~-~l~~~~s 35 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR-SDI-ELLSIPE 35 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC-CCe-EEEEEec
Confidence 68999999999999999988886 555 4555543
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.55 Score=44.43 Aligned_cols=124 Identities=17% Similarity=0.114 Sum_probs=69.5
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH--------hhHHH-HHHhhhhcCCCcccC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID--------KMLDT-VAISLKFTCSTSKES 164 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~--------~~~~~-~~~~~~~~~~~~~~D 164 (545)
.+++++|+|.| .|.+|++++..|.+.| +.++..+....-..+...|.. ..... ..+.++.-++..--+
T Consensus 18 ~L~~~~VlivG-~GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~ 94 (228)
T cd00757 18 KLKNARVLVVG-AGGLGSPAAEYLAAAG--VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIE 94 (228)
T ss_pred HHhCCcEEEEC-CCHHHHHHHHHHHHcC--CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEE
Confidence 35578999999 5889999999999985 567777655432222111110 00001 222333222211001
Q ss_pred CCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 165 AQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 165 l~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
..... ++.+.+.++++++|+||.|..... .-..+-++|.+. + .++|+.+.....+.
T Consensus 95 ~~~~~--i~~~~~~~~~~~~DvVi~~~d~~~--------------~r~~l~~~~~~~-~-ip~i~~g~~g~~g~ 150 (228)
T cd00757 95 AYNER--LDAENAEELIAGYDLVLDCTDNFA--------------TRYLINDACVKL-G-KPLVSGAVLGFEGQ 150 (228)
T ss_pred Eecce--eCHHHHHHHHhCCCEEEEcCCCHH--------------HHHHHHHHHHHc-C-CCEEEEEeccCEEE
Confidence 11111 245677788889999999876421 112455677775 4 57888876654443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.59 Score=44.26 Aligned_cols=125 Identities=17% Similarity=0.106 Sum_probs=69.8
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH-----hh---HHH--HHHhhhhcCCCcc
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID-----KM---LDT--VAISLKFTCSTSK 162 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-----~~---~~~--~~~~~~~~~~~~~ 162 (545)
+..++.+|+|.|+ |.+|++++..|.+.| +.+++++....-..+...|.. .+ .+. .-..++.-++...
T Consensus 23 ~~L~~~~VlIiG~-GGlGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~ 99 (231)
T PRK08328 23 EKLKKAKVAVVGV-GGLGSPVAYYLAAAG--VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIK 99 (231)
T ss_pred HHHhCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCE
Confidence 3356789999995 789999999999985 668887765543322222110 00 000 0112222122111
Q ss_pred cCCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 163 ESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 163 ~Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
-...... ++.+...++++++|+||.+..... . -..+-++|++. + .++|+.++.+.+|.
T Consensus 100 v~~~~~~--~~~~~~~~~l~~~D~Vid~~d~~~--~------------r~~l~~~~~~~-~-ip~i~g~~~g~~G~ 157 (231)
T PRK08328 100 IETFVGR--LSEENIDEVLKGVDVIVDCLDNFE--T------------RYLLDDYAHKK-G-IPLVHGAVEGTYGQ 157 (231)
T ss_pred EEEEecc--CCHHHHHHHHhcCCEEEECCCCHH--H------------HHHHHHHHHHc-C-CCEEEEeeccCEEE
Confidence 1111111 355667778889999998865421 1 11334567775 4 56888888766654
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.24 Score=44.25 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=44.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
+.+++|+|.|+++.+|..++..|.+.|. +|+...|..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~---~V~v~~r~~---------------------------------------- 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA---TVTVCHSKT---------------------------------------- 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC---EEEEEECCc----------------------------------------
Confidence 5689999999987889999999998753 577766641
Q ss_pred HHHHHHhcCccEEEEcccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
+++.+.+.++|+||.+.+..+
T Consensus 79 ~~l~~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 79 KNLKEHTKQADIVIVAVGKPG 99 (168)
T ss_pred hhHHHHHhhCCEEEEcCCCCc
Confidence 234556778899999877643
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.42 Score=47.34 Aligned_cols=115 Identities=10% Similarity=0.107 Sum_probs=68.9
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
+|.|.|| |.+|..++..|+..+. ..+++.+...+....+ +.+ ++... .|.. .. ++. +...++
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~-~~elvL~Di~~~~a~g-~a~-DL~~~~~~~~----~~----~~~-----i~~~~y 63 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGL-FSEIVLIDVNEGVAEG-EAL-DFHHATALTY----ST----NTK-----IRAGDY 63 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcchhhH-HHH-HHHhhhccCC----CC----CEE-----EEECCH
Confidence 4789998 9999999999988742 4578777765432211 111 10000 0000 00 000 001123
Q ss_pred HHHhcCccEEEEccccccc-hHH--HHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 178 RLVTSKVNLVFHCAATLRF-DEE--LKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~~-~~~--~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
+.++++|+||-+||..+- ..+ ..+.+..|+.-.+.+.+...+. +...++.+-|
T Consensus 64 -~~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvs 119 (307)
T cd05290 64 -DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILIT 119 (307)
T ss_pred -HHhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 345899999999998543 233 3667799999999999988886 4555555544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.75 Score=46.39 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=67.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
++|.|+|+ |.+|..++..|+..+. ..+++.+...+..... +.++ +.+....+. .. .+.. ..++
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~LiDi~~~~~~g-~a~D--L~~~~~~~~--~~----~i~~------~~dy 100 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDL-ADELALVDVNPDKLRG-EMLD--LQHAAAFLP--RT----KILA------STDY 100 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCCchhhH-HHHH--HHhhhhcCC--CC----EEEe------CCCH
Confidence 69999996 9999999999987743 3468777775432211 1111 111000000 00 1110 0124
Q ss_pred HHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEE
Q psy16252 178 RLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFT 228 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v 228 (545)
+. ++++|+||-+||..+ ...+..+....|+.-.+.+++...+. ..+.++
T Consensus 101 ~~-~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~iv 150 (350)
T PLN02602 101 AV-TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTIL 150 (350)
T ss_pred HH-hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEE
Confidence 44 689999999999753 23345667788999999998888875 434333
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.44 Score=43.96 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=53.1
Q ss_pred hhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHH----Hhh---HHH-HHHhhhhcCCCcc
Q psy16252 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRI----DKM---LDT-VAISLKFTCSTSK 162 (545)
Q Consensus 91 ~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl----~~~---~~~-~~~~~~~~~~~~~ 162 (545)
..+.++.++|+|.|+ |.+|+.++..|.+.| +.+|+...+..-..+...|. .+. ... .-..+..-++. .
T Consensus 15 ~q~~L~~~~V~IvG~-GglGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~-~ 90 (200)
T TIGR02354 15 IVQKLEQATVAICGL-GGLGSNVAINLARAG--IGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPY-T 90 (200)
T ss_pred HHHHHhCCcEEEECc-CHHHHHHHHHHHHcC--CCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCC-C
Confidence 344466799999997 779999999999985 55788777762111111111 000 000 11122211211 1
Q ss_pred cCCCCCCCCCCHHHHHHHhcCccEEEEc
Q psy16252 163 ESAQAPDLGLSPDDKRLVTSKVNLVFHC 190 (545)
Q Consensus 163 ~Dl~~~~lgl~~~~~~~l~~~vd~Vih~ 190 (545)
++....-.++.+.+.++++++|+||-+
T Consensus 91 -~i~~~~~~i~~~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 91 -EIEAYDEKITEENIDKFFKDADIVCEA 117 (200)
T ss_pred -EEEEeeeeCCHhHHHHHhcCCCEEEEC
Confidence 111111123566778888999999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.67 Score=46.04 Aligned_cols=110 Identities=10% Similarity=0.116 Sum_probs=68.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-H-HHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-V-AISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~-~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
++|.|+|| |.+|..++..|+..+- ..+++.+.+....... +.+ -+.. . |.. .. .+. ...
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~-~~el~LiD~~~~~~~g-~a~--Dl~~~~~~~~----~~----~v~------~~~ 64 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGL-ADELVLVDVVEDKLKG-EAM--DLQHGSAFLK----NP----KIE------ADK 64 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCccHHHH-HHH--HHHHhhccCC----CC----EEE------ECC
Confidence 68999996 9999999998887642 4578877765432111 111 1111 0 000 00 111 012
Q ss_pred HHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEE
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFT 228 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v 228 (545)
+++. ++++|+||-+||..+- ..+....+..|..-.+.+.+...+. ..+.++
T Consensus 65 dy~~-~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~v 116 (312)
T cd05293 65 DYSV-TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAIL 116 (312)
T ss_pred CHHH-hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEE
Confidence 3454 6899999999997542 3445677899999999999888886 444443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.13 Score=51.38 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=30.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
++.+|.|.||||++|..|++.|.++.+.+.++..+...
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~ 40 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE 40 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence 46899999999999999999998854455677766443
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.55 Score=47.59 Aligned_cols=125 Identities=13% Similarity=0.005 Sum_probs=70.5
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH-----h---hHHH-HHHhhhhcCCCccc
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID-----K---MLDT-VAISLKFTCSTSKE 163 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-----~---~~~~-~~~~~~~~~~~~~~ 163 (545)
+.+++.+|+|.|+ |.+|+.++..|.+.| +.++..+....-..+...|.. . .... .-..++.-++..--
T Consensus 24 ~~L~~~~VlivG~-GGlGs~~a~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v 100 (355)
T PRK05597 24 QSLFDAKVAVIGA-GGLGSPALLYLAGAG--VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKV 100 (355)
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEE
Confidence 3356799999997 889999999999984 678888777643322221110 0 0000 12223322221111
Q ss_pred CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 164 SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
..... .++.+...++++++|+||.+.... .. -..+-++|.+. + .+||+.++....+.
T Consensus 101 ~~~~~--~i~~~~~~~~~~~~DvVvd~~d~~------~~--------r~~~n~~c~~~-~-ip~v~~~~~g~~g~ 157 (355)
T PRK05597 101 TVSVR--RLTWSNALDELRDADVILDGSDNF------DT--------RHLASWAAARL-G-IPHVWASILGFDAQ 157 (355)
T ss_pred EEEEe--ecCHHHHHHHHhCCCEEEECCCCH------HH--------HHHHHHHHHHc-C-CCEEEEEEecCeEE
Confidence 00011 134556677888999999987531 11 11244567765 4 56888887655443
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.1 Score=44.61 Aligned_cols=117 Identities=10% Similarity=0.090 Sum_probs=69.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
+.++|.|.| .|.+|..++..++..|. ..|+++.+.+.... .+.++.....-+ ..... .+. ...
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl--~~i~LvDi~~~~~~-~~~ld~~~~~~~---~~~~~----~I~------~~~ 67 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNL--GDVVLFDIVKNIPQ-GKALDISHSNVI---AGSNS----KVI------GTN 67 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC--CeEEEEeCCCchhh-HHHHHHHhhhhc---cCCCe----EEE------ECC
Confidence 357899999 59999999998887753 35777777655321 122221110000 00000 111 002
Q ss_pred HHHHHhcCccEEEEccccccc-hH-----HHHHHHHHhHHHHHHHHHHHHHccCCc-eEEEEe
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF-DE-----ELKEAIRTNMCATQTMLDLAKQCKNLK-MFTYVS 231 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~-~~-----~~~~~~~~Nv~gt~~ll~~a~~~~~~~-~~v~vS 231 (545)
+++ .++++|+||.+|+..+- .. +..+....|+.-.+.+++...+. ..+ .++.+|
T Consensus 68 d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~-~p~a~~iv~s 128 (321)
T PTZ00082 68 NYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY-CPNAFVIVIT 128 (321)
T ss_pred CHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 344 45899999999987432 12 44566778888888888887775 344 455555
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.33 Score=42.66 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=29.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.++++|+|+|+ |.+|..+++.|.+.| ...|++..|+.
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g--~~~v~v~~r~~ 53 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELG--AAKIVIVNRTL 53 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEcCCH
Confidence 34689999997 999999999999874 34687777753
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.2 Score=47.31 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=22.7
Q ss_pred EEec-cccccchHHHHHHHhhCCCcCEEEEEec
Q psy16252 101 LMTG-ATGFLGKLLIEKLLRSFPRVKTIYVIVR 132 (545)
Q Consensus 101 lITG-atGflG~~l~~~Ll~~g~~v~~V~~l~R 132 (545)
+||. +||++|.++++.|++.|+ +|+++.|
T Consensus 18 ~itN~SSGgIG~AIA~~la~~Ga---~Vvlv~~ 47 (227)
T TIGR02114 18 SITNHSTGHLGKIITETFLSAGH---EVTLVTT 47 (227)
T ss_pred eecCCcccHHHHHHHHHHHHCCC---EEEEEcC
Confidence 4555 589999999999999986 5665554
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.62 Score=43.48 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=70.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhH-HH--------HHHhhhhcCCCcccCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKML-DT--------VAISLKFTCSTSKESA 165 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~-~~--------~~~~~~~~~~~~~~Dl 165 (545)
++..+|+|.|. |.+|++.++.|.+.| +.++..+.-..-..+...|.-..+ .. .-++++.-+++. .+
T Consensus 28 l~~~~V~VvGi-GGVGSw~veALaRsG--ig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c--~V 102 (263)
T COG1179 28 LKQAHVCVVGI-GGVGSWAVEALARSG--IGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPEC--EV 102 (263)
T ss_pred HhhCcEEEEec-CchhHHHHHHHHHcC--CCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCc--eE
Confidence 55688999996 779999999999995 567776654443333333222211 10 112222222211 11
Q ss_pred CCCCCCCCHHHHHHHhc-CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC
Q psy16252 166 QAPDLGLSPDDKRLVTS-KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 166 ~~~~lgl~~~~~~~l~~-~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~ 240 (545)
..-+.-++++.++.++. +.|.||.+--. +..-..|+..|.+. ++ -.+||.++.+...
T Consensus 103 ~~~~~f~t~en~~~~~~~~~DyvIDaiD~--------------v~~Kv~Li~~c~~~-ki---~vIss~Gag~k~D 160 (263)
T COG1179 103 TAINDFITEENLEDLLSKGFDYVIDAIDS--------------VRAKVALIAYCRRN-KI---PVISSMGAGGKLD 160 (263)
T ss_pred eehHhhhCHhHHHHHhcCCCCEEEEchhh--------------hHHHHHHHHHHHHc-CC---CEEeeccccCCCC
Confidence 11111136677777765 58999987432 33345788899986 44 3457777666543
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.69 Score=53.07 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=48.1
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcC------------EEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVK------------TIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE 163 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~------------~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 163 (545)
+.++|+|.|| |++|+..++.|.+. +++. .|.+..+... ..+++.+ . + .+.+.+.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~---~a~~la~---~----~--~~~~~v~ 633 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLK---DAKETVE---G----I--ENAEAVQ 633 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHH---HHHHHHH---h----c--CCCceEE
Confidence 3679999997 99999999999876 3322 2333333211 1111111 0 0 0122233
Q ss_pred -CCCCCCCCCCHHHHHHHhcCccEEEEcccc
Q psy16252 164 -SAQAPDLGLSPDDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 164 -Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~ 193 (545)
|+. +.+++.++++++|+||.+...
T Consensus 634 lDv~------D~e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 634 LDVS------DSESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred eecC------CHHHHHHhhcCCCEEEECCCc
Confidence 665 667888888899999999875
|
|
| >KOG4022|consensus | Back alignment and domain information |
|---|
Probab=91.84 E-value=8.2 Score=33.72 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=26.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEE
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIY 128 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~ 128 (545)
..+|+|-|+-|-+|+++++.+.++++-|..|.
T Consensus 3 agrVivYGGkGALGSacv~~FkannywV~siD 34 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYWVLSID 34 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeEEEEEe
Confidence 36899999999999999999998876444443
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=91.76 E-value=1 Score=43.65 Aligned_cols=107 Identities=15% Similarity=0.072 Sum_probs=65.6
Q ss_pred EEEeccccccchHHHHHHHhhCC-CcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFP-RVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKR 178 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~-~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~~ 178 (545)
|.|.||+|.+|..++..|+..+. ...+|+++.+.+..... ....+....... ... .+. ...++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~---~~~dl~~~~~~~--~~~----~i~------~~~d~~ 65 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKG---VAMDLQDAVEPL--ADI----KVS------ITDDPY 65 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchH---HHHHHHHhhhhc--cCc----EEE------ECCchH
Confidence 57999999999999999988751 23578888776532221 111122100000 000 111 012345
Q ss_pred HHhcCccEEEEccccccch-HHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 179 LVTSKVNLVFHCAATLRFD-EELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 179 ~l~~~vd~Vih~Aa~~~~~-~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
+.++++|+||-+++..+.. .........|+.-.+.+++...+.
T Consensus 66 ~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~ 109 (263)
T cd00650 66 EAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY 109 (263)
T ss_pred HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999875432 233456677998889999888875
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.74 Score=39.90 Aligned_cols=118 Identities=19% Similarity=0.112 Sum_probs=62.8
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH----hhH----HH-HHHhhhhcCCCcccCCCCCC
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID----KML----DT-VAISLKFTCSTSKESAQAPD 169 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~----~~~----~~-~~~~~~~~~~~~~~Dl~~~~ 169 (545)
+|+|.|+ |.+|+.++..|.+.| +.++..+....-..+...|.. ... .. +-..++.-++.. + +....
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~G--v~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v-~-i~~~~ 75 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSG--VGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGV-N-VTAVP 75 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCC--CCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCc-E-EEEEe
Confidence 4789996 999999999999985 457777765532222111110 000 00 112222222211 1 00000
Q ss_pred CCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccccc
Q psy16252 170 LGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 170 lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~ 237 (545)
..++.......+.+.|+||.+.... .....+.++|++. + .+|+.+++....+
T Consensus 76 ~~~~~~~~~~~~~~~diVi~~~d~~--------------~~~~~l~~~~~~~-~-i~~i~~~~~g~~g 127 (143)
T cd01483 76 EGISEDNLDDFLDGVDLVIDAIDNI--------------AVRRALNRACKEL-G-IPVIDAGGLGLGG 127 (143)
T ss_pred eecChhhHHHHhcCCCEEEECCCCH--------------HHHHHHHHHHHHc-C-CCEEEEcCCCcEE
Confidence 1113333466678999999987641 1123566778875 4 5678777765443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.71 Score=47.02 Aligned_cols=125 Identities=19% Similarity=0.117 Sum_probs=70.5
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH-----h---hHHH-HHHhhhhcCCCccc
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID-----K---MLDT-VAISLKFTCSTSKE 163 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-----~---~~~~-~~~~~~~~~~~~~~ 163 (545)
..+++.+|+|.|+ |.+|+.++..|.+.| +.++..+....-..+...|.. . .... ....++.-++..
T Consensus 37 ~~l~~~~VliiG~-GglG~~v~~~La~~G--vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v-- 111 (370)
T PRK05600 37 ERLHNARVLVIGA-GGLGCPAMQSLASAG--VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDI-- 111 (370)
T ss_pred HHhcCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCC--
Confidence 3356789999996 789999999999984 668887776633222222210 0 0000 122232222211
Q ss_pred CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 164 SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
++....-.++.+...++++++|+||.|..... . -..+-++|.+. + .++|+.+...-.|.
T Consensus 112 ~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~------~--------r~~in~~~~~~-~-iP~v~~~~~g~~G~ 170 (370)
T PRK05600 112 RVNALRERLTAENAVELLNGVDLVLDGSDSFA------T--------KFLVADAAEIT-G-TPLVWGTVLRFHGE 170 (370)
T ss_pred eeEEeeeecCHHHHHHHHhCCCEEEECCCCHH------H--------HHHHHHHHHHc-C-CCEEEEEEecCEEE
Confidence 11111112355667788899999999865421 1 11344567765 4 46888877654443
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.44 Score=46.55 Aligned_cols=37 Identities=32% Similarity=0.394 Sum_probs=31.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
..+++|+|+|+ |.+|+.++..|...| +.+|++..|+.
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g--~~~V~v~~R~~ 157 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLG--VAEITIVNRTV 157 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcC--CCEEEEEeCCH
Confidence 45789999997 999999999999875 45899998874
|
|
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.42 Score=47.74 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=65.7
Q ss_pred HhcCccEEEEccccccchHHH--HHHHHHhHHHHHHHHHHHH----HccCCceEEEEeccccccCCCcccccccCCCCCH
Q psy16252 180 VTSKVNLVFHCAATLRFDEEL--KEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHY 253 (545)
Q Consensus 180 l~~~vd~Vih~Aa~~~~~~~~--~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~ 253 (545)
.+.++..+|.+-|..+....- .....+...-+..|++... .. ..|++|-++|........
T Consensus 200 ~l~~i~t~is~LGsts~~a~~s~~~~~~IDy~Lnl~laq~f~~~~~~~-~~K~~vIvTSfn~~~~s~------------- 265 (410)
T PF08732_consen 200 SLDDIKTMISTLGSTSAQAKSSKAARHKIDYQLNLDLAQTFANDIKNT-GNKKLVIVTSFNNNAISS------------- 265 (410)
T ss_pred chhhhhhheecCCCChhhccccccchhhccccccHHHHHHhhhhhccC-CCceEEEEEecCcchhhh-------------
Confidence 345677888887776533211 1122344444556666655 44 679999999985432110
Q ss_pred HHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccC--CCEEEEccceeeccCCCC
Q psy16252 254 SELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQF--FPVCIFRPSIVISTWKEP 319 (545)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~--l~~~i~Rp~~i~g~~~~~ 319 (545)
...|..+|..-|.-+...-.+ -.++|+|||-+.|.+.+.
T Consensus 266 ---------------------------~f~Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~~ 306 (410)
T PF08732_consen 266 ---------------------------MFPYFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGSI 306 (410)
T ss_pred ---------------------------hhhhhHHHHHHHHHHHhhcccccceEEEecCccccCCCCCC
Confidence 147999999999999887522 358999999999987773
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.5 Score=46.17 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=29.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+.+++|+|||++| +|...++.|.+.|. .|++..+..
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~---~V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGA---NVTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCC---EEEEEcCCC
Confidence 3579999999988 99999999999875 566665543
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.47 Score=43.72 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=66.5
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHH--------HHhhHHH-HHHhhhhcCCCccc
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQR--------IDKMLDT-VAISLKFTCSTSKE 163 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~r--------l~~~~~~-~~~~~~~~~~~~~~ 163 (545)
+.+++++|+|.|+.| +|.++++.|...| +.++..+....-..+...| +-..... ..+.++.-++...-
T Consensus 17 ~~L~~s~VlIiG~gg-lG~evak~La~~G--Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i 93 (197)
T cd01492 17 KRLRSARILLIGLKG-LGAEIAKNLVLSG--IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKV 93 (197)
T ss_pred HHHHhCcEEEEcCCH-HHHHHHHHHHHcC--CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEE
Confidence 335578999999877 9999999999985 6788777655322211111 0000001 22233333332111
Q ss_pred CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 164 SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
+.....+ + +...+.++++|+||.+... .+.. ..+-++|++. ++ +|++.++.+.+|.
T Consensus 94 ~~~~~~~--~-~~~~~~~~~~dvVi~~~~~------~~~~--------~~ln~~c~~~-~i-p~i~~~~~G~~G~ 149 (197)
T cd01492 94 SVDTDDI--S-EKPEEFFSQFDVVVATELS------RAEL--------VKINELCRKL-GV-KFYATGVHGLFGF 149 (197)
T ss_pred EEEecCc--c-ccHHHHHhCCCEEEECCCC------HHHH--------HHHHHHHHHc-CC-CEEEEEecCCEEE
Confidence 1111111 1 1234567889999976432 1111 2344677775 54 6888888765553
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.51 Score=46.04 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=29.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEec
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R 132 (545)
++|++|+|.|++|.+|+.++..|++.|. .|.+..|
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga---tVtv~~~ 191 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA---TVTICHS 191 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC---EEEEEeC
Confidence 4689999999999999999999998753 5665544
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.4 Score=45.34 Aligned_cols=125 Identities=18% Similarity=0.103 Sum_probs=69.6
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH----hhHH----H-HHHhhhhcCCCccc
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID----KMLD----T-VAISLKFTCSTSKE 163 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~----~~~~----~-~~~~~~~~~~~~~~ 163 (545)
..+++.+|+|.|+ |.+|+.++..|.+.| |.++..+....-..+...|-. ...+ . ....++.-++.+--
T Consensus 38 ~~L~~~~VlviG~-GGlGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i 114 (392)
T PRK07878 38 KRLKNARVLVIGA-GGLGSPTLLYLAAAG--VGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNV 114 (392)
T ss_pred HHHhcCCEEEECC-CHHHHHHHHHHHHcC--CCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEE
Confidence 3456789999996 789999999999985 567777765533222222210 0000 0 11222222221100
Q ss_pred CCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 164 SAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
+..... ++.+...++++++|+||.+.... . .-..+-++|.+. + ++||+.++....|.
T Consensus 115 ~~~~~~--i~~~~~~~~~~~~D~Vvd~~d~~------~--------~r~~ln~~~~~~-~-~p~v~~~~~g~~G~ 171 (392)
T PRK07878 115 RLHEFR--LDPSNAVELFSQYDLILDGTDNF------A--------TRYLVNDAAVLA-G-KPYVWGSIYRFEGQ 171 (392)
T ss_pred EEEecc--CChhHHHHHHhcCCEEEECCCCH------H--------HHHHHHHHHHHc-C-CCEEEEEeccCEEE
Confidence 111111 24455677888999999876431 1 112345677775 4 56898888766554
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.29 E-value=2.7 Score=41.70 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=68.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|.|.|+ |.+|..++..|+..|. ...|+++.|....... + ..+ +.. .. .+.... . ....++
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~-~~ev~l~D~~~~~~~g-~-a~d-l~~-------~~-~~~~~~-~----i~~~d~ 62 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGL-ASEIVLVDINKAKAEG-E-AMD-LAH-------GT-PFVKPV-R----IYAGDY 62 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CCEEEEEECCchhhhh-H-HHH-HHc-------cc-cccCCe-E----EeeCCH
Confidence 46899998 9999999999998863 3578888876432110 0 000 000 00 000000 0 001123
Q ss_pred HHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 178 RLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
+ .++++|+||-+++... ...+.......|+.-.+.+++...+. +.+-++.+-|
T Consensus 63 ~-~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~t 116 (308)
T cd05292 63 A-DCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVT 116 (308)
T ss_pred H-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 3 3689999999999753 23345566788999888888888775 3444444443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.46 Score=46.80 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=29.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
++|.|.||||.+|+.+++.|.++.+.+..+..+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~ 37 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASA 37 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecc
Confidence 689999999999999999999865666656665444
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.97 Score=43.62 Aligned_cols=121 Identities=16% Similarity=0.171 Sum_probs=65.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH----hhHH----H-HHHhhhhcCCCcccCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID----KMLD----T-VAISLKFTCSTSKESA 165 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~----~~~~----~-~~~~~~~~~~~~~~Dl 165 (545)
+++.+|+|.|+ |.+|+++++.|.+.| |.++..+....-..+...|.. ...+ . ..+.+..-++..- +
T Consensus 28 L~~s~VlVvG~-GGVGs~vae~Lar~G--Vg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~--V 102 (268)
T PRK15116 28 FADAHICVVGI-GGVGSWAAEALARTG--IGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECR--V 102 (268)
T ss_pred hcCCCEEEECc-CHHHHHHHHHHHHcC--CCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcE--E
Confidence 56789999985 889999999999985 567877765533222222211 0000 0 1222222222110 1
Q ss_pred CCCCCCCCHHHHHHHhc-CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccc
Q psy16252 166 QAPDLGLSPDDKRLVTS-KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 166 ~~~~lgl~~~~~~~l~~-~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~ 236 (545)
..-+-.++++...+++. ++|+||.+..... .-..|.+.|.+. + .+||.+..++.-
T Consensus 103 ~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~--------------~k~~L~~~c~~~-~-ip~I~~gGag~k 158 (268)
T PRK15116 103 TVVDDFITPDNVAEYMSAGFSYVIDAIDSVR--------------PKAALIAYCRRN-K-IPLVTTGGAGGQ 158 (268)
T ss_pred EEEecccChhhHHHHhcCCCCEEEEcCCCHH--------------HHHHHHHHHHHc-C-CCEEEECCcccC
Confidence 10011134556666664 7999998866421 112577788875 5 356655555433
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.08 E-value=2.4 Score=42.11 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=62.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
++|.|.|| |.+|..++..+...|. . .|+++.+.+..... ..+ + +.+.... ......+- ...++
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~-~-ev~L~D~~~~~~~~-~~~-d----l~~~~~~-------~~~~~~i~-~~~d~ 65 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKEL-G-DVVLFDIVEGVPQG-KAL-D----IAEAAPV-------EGFDTKIT-GTNDY 65 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-e-EEEEEECCCchhHH-HHH-H----HHhhhhh-------cCCCcEEE-eCCCH
Confidence 68999998 9999999999988743 2 78888775432111 111 1 0110000 00000000 01234
Q ss_pred HHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 178 RLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
+ .+.++|+||.+++... ...+..+....|+.-.+.+++...+.
T Consensus 66 ~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~ 109 (307)
T PRK06223 66 E-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY 109 (307)
T ss_pred H-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3589999999988643 22334456677888888888777664
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.98 E-value=2.6 Score=41.80 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=28.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
++|.|.| +|.+|..++..|++.|+ +|++..|++
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~---~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGH---EVRLWDADP 35 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCC---eeEEEeCCH
Confidence 5799999 89999999999999876 577777764
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.33 Score=49.13 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=28.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.++|+|+||||++|+.|++.|++. +. .++..+.++.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p~-~el~~~~~s~ 38 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-PW-FEVTALAASE 38 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-CC-ceEEEEEcCh
Confidence 378999999999999999999875 33 3677765553
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.89 Score=44.22 Aligned_cols=58 Identities=12% Similarity=0.252 Sum_probs=44.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
++|++|+|.|+++.+|+.++..|++.|. .|....+..
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga---tVtv~~s~t---------------------------------------- 192 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA---SVTILHSRS---------------------------------------- 192 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC---eEEEEeCCc----------------------------------------
Confidence 5689999999999999999999998753 555544321
Q ss_pred HHHHHHhcCccEEEEcccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
.++.+.++++|+||.+.+..+
T Consensus 193 ~~l~~~~~~ADIVIsAvg~p~ 213 (286)
T PRK14175 193 KDMASYLKDADVIVSAVGKPG 213 (286)
T ss_pred hhHHHHHhhCCEEEECCCCCc
Confidence 124556678899999888754
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=89.64 E-value=2.2 Score=45.66 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=56.0
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+.++..+|+|.| +|.+|+.++..|+..| +..+.+++=+.. .+...|+.+.... -... ...+.+-. +..
T Consensus 125 ~~qR~akVlVlG-~Gg~~s~lv~sL~~sG--~~~I~~vd~D~v-~SNlnRIgEl~e~-A~~~-n~~v~v~~i~~~----- 193 (637)
T TIGR03693 125 ELSRNAKILAAG-SGDFLTKLVRSLIDSG--FPRFHAIVTDAE-EHALDRIHELAEI-AEET-DDALLVQEIDFA----- 193 (637)
T ss_pred hhhhcccEEEEe-cCchHHHHHHHHHhcC--CCcEEEEecccc-chhhhHHHHHHHH-HHHh-CCCCceEeccCC-----
Confidence 345788999999 5778899999999996 456766644433 4455555554221 1110 11111111 322
Q ss_pred CCHHHHHHHhcCccEEEEcccc
Q psy16252 172 LSPDDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 172 l~~~~~~~l~~~vd~Vih~Aa~ 193 (545)
+.+++.+++++.|+|++.+-.
T Consensus 194 -~~~dl~ev~~~~DiVi~vsDd 214 (637)
T TIGR03693 194 -EDQHLHEAFEPADWVLYVSDN 214 (637)
T ss_pred -cchhHHHhhcCCcEEEEECCC
Confidence 467889999999999998764
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.52 Score=49.26 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=26.0
Q ss_pred hcCcEEEEecc----------------ccccchHHHHHHHhhCCCc
Q psy16252 95 YEGAEILMTGA----------------TGFLGKLLIEKLLRSFPRV 124 (545)
Q Consensus 95 ~~~~~VlITGa----------------tGflG~~l~~~Ll~~g~~v 124 (545)
++|++||||+| ||-.|.+|++.+...|.+|
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~V 299 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEV 299 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcE
Confidence 57899999986 6789999999999998754
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=89.28 E-value=4.2 Score=38.43 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=65.5
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhh----H----HH-HHHhhhhcCCCcccC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKM----L----DT-VAISLKFTCSTSKES 164 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~----~----~~-~~~~~~~~~~~~~~D 164 (545)
.+++.+|+|.|. |.+|+++++.|.+.| +.++..+....-..+...|..-. . .. ..+.++.-++..--.
T Consensus 8 ~L~~~~VlVvG~-GGvGs~va~~Lar~G--Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~ 84 (231)
T cd00755 8 KLRNAHVAVVGL-GGVGSWAAEALARSG--VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVD 84 (231)
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHcC--CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEE
Confidence 356789999995 789999999999985 66888776554333222221100 0 00 222333222211001
Q ss_pred CCCCCCCCCHHHHHHHhc-CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccc
Q psy16252 165 AQAPDLGLSPDDKRLVTS-KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFS 235 (545)
Q Consensus 165 l~~~~lgl~~~~~~~l~~-~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v 235 (545)
..... ++++....++. +.|+||.+.... .....|.+.|++. + .+||...+++.
T Consensus 85 ~~~~~--i~~~~~~~l~~~~~D~VvdaiD~~--------------~~k~~L~~~c~~~-~-ip~I~s~g~g~ 138 (231)
T cd00755 85 AVEEF--LTPDNSEDLLGGDPDFVVDAIDSI--------------RAKVALIAYCRKR-K-IPVISSMGAGG 138 (231)
T ss_pred Eeeee--cCHhHHHHHhcCCCCEEEEcCCCH--------------HHHHHHHHHHHHh-C-CCEEEEeCCcC
Confidence 11111 24455566654 689999885432 1223567888886 4 35665544443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.75 Score=50.58 Aligned_cols=123 Identities=11% Similarity=0.122 Sum_probs=68.2
Q ss_pred hhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH----hhHH--H---HHHhhhhcCCCc
Q psy16252 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID----KMLD--T---VAISLKFTCSTS 161 (545)
Q Consensus 91 ~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~----~~~~--~---~~~~~~~~~~~~ 161 (545)
.++.+++.+|+|.| .|.+|+.++..|.+.| |.++..+.-..-..+...|.. ..++ + .-..++.-++.
T Consensus 37 ~Q~kL~~~~VlIvG-~GGlGs~va~~Lar~G--VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~- 112 (679)
T PRK14851 37 EQERLAEAKVAIPG-MGGVGGVHLITMVRTG--IGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPF- 112 (679)
T ss_pred HHHHHhcCeEEEEC-cCHHHHHHHHHHHHhC--CCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCC-
Confidence 34446789999999 5889999999999985 567777655432222222210 0000 0 11222222221
Q ss_pred ccCCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 162 KESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 162 ~~Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
+ ++....-+++.+.+..+++++|+||.+.-...+.. -..+.+.|.+. ++ .+|+.+.
T Consensus 113 ~-~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~------------r~~l~~~c~~~-~i-P~i~~g~ 168 (679)
T PRK14851 113 L-EITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEI------------RRTLFNMAREK-GI-PVITAGP 168 (679)
T ss_pred C-eEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHH------------HHHHHHHHHHC-CC-CEEEeec
Confidence 1 22222223466778888999999997753322111 12455677775 54 4666554
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.63 Score=45.62 Aligned_cols=70 Identities=13% Similarity=0.247 Sum_probs=46.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..+++|+|.|+ |.+|+.+++.|...|. +|++..|.... .++.. .. ... . ...
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~---~V~v~~R~~~~---~~~~~---~~--------------g~~--~--~~~ 200 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGA---RVFVGARSSAD---LARIT---EM--------------GLI--P--FPL 200 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHH---HC--------------CCe--e--ecH
Confidence 45799999997 7799999999998764 68888886421 11111 00 000 0 133
Q ss_pred HHHHHHhcCccEEEEccc
Q psy16252 175 DDKRLVTSKVNLVFHCAA 192 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa 192 (545)
+++.++++++|+||++..
T Consensus 201 ~~l~~~l~~aDiVint~P 218 (287)
T TIGR02853 201 NKLEEKVAEIDIVINTIP 218 (287)
T ss_pred HHHHHHhccCCEEEECCC
Confidence 456778889999999764
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.45 E-value=0.5 Score=43.30 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.1
Q ss_pred EEEeccccccchHHHHHHHhhCCC
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPR 123 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~ 123 (545)
+...||||.+|..|++.|.+.||+
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~e 26 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHE 26 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCe
Confidence 445566999999999999999874
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.13 Score=46.57 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=30.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
..|++|.|.| .|-||+.+++.|..-|. +|+...|..+
T Consensus 34 l~g~tvgIiG-~G~IG~~vA~~l~~fG~---~V~~~d~~~~ 70 (178)
T PF02826_consen 34 LRGKTVGIIG-YGRIGRAVARRLKAFGM---RVIGYDRSPK 70 (178)
T ss_dssp STTSEEEEES-TSHHHHHHHHHHHHTT----EEEEEESSCH
T ss_pred cCCCEEEEEE-EcCCcCeEeeeeecCCc---eeEEecccCC
Confidence 4689999998 59999999999998754 7888888754
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=88.36 E-value=4 Score=40.41 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=63.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
++|.|.|+ |.+|..++..|+..|.. .|+++.+.+..... +.+ +.... ... ......+- ...++
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~--~VvlvDi~~~l~~g-~a~-d~~~~----~~~-------~~~~~~i~-~t~d~ 64 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA--DLVLLDVVEGIPQG-KAL-DMYEA----SPV-------GGFDTKVT-GTNNY 64 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC--eEEEEeCCCChhHH-HHH-hhhhh----hhc-------cCCCcEEE-ecCCH
Confidence 57899996 99999999999887642 57777774332111 111 11110 000 00000110 01234
Q ss_pred HHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 178 RLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
+. ++++|+||-+|+...- ..+..+....|..-...+++...+.
T Consensus 65 ~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~ 108 (305)
T TIGR01763 65 AD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH 108 (305)
T ss_pred HH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5789999999997542 2344567788999999988877765
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.21 E-value=1.3 Score=45.49 Aligned_cols=126 Identities=17% Similarity=0.052 Sum_probs=70.5
Q ss_pred hhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHH--H---Hh---hHHH-HHHhhhhcCCCcc
Q psy16252 92 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQR--I---DK---MLDT-VAISLKFTCSTSK 162 (545)
Q Consensus 92 ~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~r--l---~~---~~~~-~~~~~~~~~~~~~ 162 (545)
++.++..+|+|.|+ |.+|+.++..|.+.| |.++..+....-..+...| + .. .... ....++.-++..-
T Consensus 33 q~~L~~~~VlivG~-GGlG~~va~~La~~G--vg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~ 109 (390)
T PRK07411 33 QKRLKAASVLCIGT-GGLGSPLLLYLAAAG--IGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQ 109 (390)
T ss_pred HHHHhcCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCe
Confidence 34466789999996 779999999999984 6688777665333222222 1 00 0000 2223333232110
Q ss_pred cCCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 163 ESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 163 ~Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
-..... .++.+...+++.++|+||.|.... +.- ..+-++|.+. + +++|+.+...-+|.
T Consensus 110 v~~~~~--~~~~~~~~~~~~~~D~Vvd~~d~~------~~r--------~~ln~~~~~~-~-~p~v~~~~~g~~g~ 167 (390)
T PRK07411 110 VDLYET--RLSSENALDILAPYDVVVDGTDNF------PTR--------YLVNDACVLL-N-KPNVYGSIFRFEGQ 167 (390)
T ss_pred EEEEec--ccCHHhHHHHHhCCCEEEECCCCH------HHH--------HHHHHHHHHc-C-CCEEEEEEccCEEE
Confidence 000111 134556677788999999986532 111 1244666665 3 67888877755543
|
|
| >KOG1198|consensus | Back alignment and domain information |
|---|
Probab=87.73 E-value=0.83 Score=46.07 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=22.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSF 121 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g 121 (545)
..|+.|||.||+|.+|...++-....+
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~ 182 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAG 182 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcC
Confidence 468999999999999999887666553
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=87.70 E-value=2.2 Score=35.68 Aligned_cols=30 Identities=27% Similarity=0.625 Sum_probs=23.4
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEE
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVI 130 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l 130 (545)
+|.|+|++|.+|..++..|... +++ +++.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~-~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDF-EVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCc-eEEEE
Confidence 4789999999999999999885 333 45554
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=87.68 E-value=2.2 Score=37.68 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=40.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
++||+|+|.|.++.+|+-|...|.+++. .|... ....
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a---tVt~~-h~~T--------------------------------------- 70 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA---TVTIC-HSKT--------------------------------------- 70 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT----EEEEE--TTS---------------------------------------
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCC---eEEec-cCCC---------------------------------------
Confidence 5689999999999999999999999853 44432 2111
Q ss_pred HHHHHHhcCccEEEEccccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF 196 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~ 196 (545)
.++++..+..|+||-.+|..++
T Consensus 71 ~~l~~~~~~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGKPNL 92 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSSTT-
T ss_pred CcccceeeeccEEeeeeccccc
Confidence 2356667889999999887654
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.3 Score=38.24 Aligned_cols=120 Identities=15% Similarity=0.085 Sum_probs=62.6
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH----h---hHHH-HHHhhhhcCCCcccCCCCCCC
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID----K---MLDT-VAISLKFTCSTSKESAQAPDL 170 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~----~---~~~~-~~~~~~~~~~~~~~Dl~~~~l 170 (545)
+|+|.|+ |.+|+.++..|.+.| +.++..+....-..+...|-. + .... ....++.-++.. ++....-
T Consensus 1 ~VlViG~-GglGs~ia~~La~~G--vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v--~i~~~~~ 75 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSG--VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFV--KIEAINI 75 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcC--CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCC--EEEEEEe
Confidence 4789995 889999999999985 567887777642221111111 0 0000 112222222211 1100011
Q ss_pred CCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 171 GLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 171 gl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
.++.+...++++++|+||.+.... . .-..+.+.+.+..+ ..||+.+..+.++.
T Consensus 76 ~~~~~~~~~~l~~~DlVi~~~d~~--~------------~r~~i~~~~~~~~~-ip~i~~~~~~~~~~ 128 (174)
T cd01487 76 KIDENNLEGLFGDCDIVVEAFDNA--E------------TKAMLAESLLGNKN-KPVVCASGMAGFGD 128 (174)
T ss_pred ecChhhHHHHhcCCCEEEECCCCH--H------------HHHHHHHHHHHHCC-CCEEEEehhhccCC
Confidence 124556778889999999984321 1 11234555555423 56777765544443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.54 E-value=0.51 Score=47.28 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFP 122 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~ 122 (545)
+.+|||+||+|.+|...++-+...|.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~ 168 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA 168 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC
Confidence 79999999999999999877777653
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.78 Score=46.43 Aligned_cols=46 Identities=39% Similarity=0.682 Sum_probs=33.8
Q ss_pred eEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecccCCCChHHHHHH
Q psy16252 17 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK 63 (545)
Q Consensus 17 ~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~~~~~~~~~r~~~ 63 (545)
++|+|||||++|.+|+..|++.. ...+|++++|........+++.+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g-~~~~V~~l~R~~~~~~~~~~l~~ 46 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRS-TQAKVICLVRAASEEHAMERLRE 46 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCC-CCCEEEEEEccCCHHHHHHHHHH
Confidence 48999999999999999999863 34589999996543323334433
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.39 E-value=1.1 Score=50.85 Aligned_cols=126 Identities=9% Similarity=0.016 Sum_probs=71.4
Q ss_pred hhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH-----hh---HHH-HHHhhhhcCCCcc
Q psy16252 92 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID-----KM---LDT-VAISLKFTCSTSK 162 (545)
Q Consensus 92 ~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-----~~---~~~-~~~~~~~~~~~~~ 162 (545)
++.+++.+|+|.| .|.+|+.++..|.+.| |.++..+.-..-..+...|.. .+ ... .-..++.-++.+
T Consensus 327 Q~kL~~srVlVvG-lGGlGs~ia~~LAraG--VG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v- 402 (989)
T PRK14852 327 QRRLLRSRVAIAG-LGGVGGIHLMTLARTG--IGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFL- 402 (989)
T ss_pred HHHHhcCcEEEEC-CcHHHHHHHHHHHHcC--CCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCC-
Confidence 4456778999999 5789999999999985 667777655433332222210 00 000 112222222211
Q ss_pred cCCCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccc
Q psy16252 163 ESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 163 ~Dl~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~ 236 (545)
++..-.-+++.+...++++++|+||.+.-..... ..+.+.+.|.+. + ..+|+.++.+..
T Consensus 403 -~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~------------~rr~l~~~c~~~-~-IP~I~ag~~G~~ 461 (989)
T PRK14852 403 -DIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALD------------IRRRLFNRALEL-G-IPVITAGPLGYS 461 (989)
T ss_pred -eEEEEecCCCHHHHHHHhhCCCEEEECCCCccHH------------HHHHHHHHHHHc-C-CCEEEeeccccC
Confidence 2222222457788889999999999765432211 113455667665 4 467777775433
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.38 E-value=0.8 Score=45.95 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=28.0
Q ss_pred CcEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRA 133 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~ 133 (545)
+.+|.|.||||++|..+++.|..+ ..++.++..+...
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~ 42 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK 42 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc
Confidence 478999999999999999988853 3445556666443
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.33 E-value=1.6 Score=42.72 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=44.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
+.||+|.|.|.+|.+|+.++..|++.|. .|.+..|...
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga---tVtv~~~~t~--------------------------------------- 194 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHC---SVTVVHSRST--------------------------------------- 194 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC---EEEEECCCCC---------------------------------------
Confidence 4699999999999999999999999875 5555433321
Q ss_pred HHHHHHhcCccEEEEcccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
++.++.+.+|+||-+.+...
T Consensus 195 -~l~e~~~~ADIVIsavg~~~ 214 (301)
T PRK14194 195 -DAKALCRQADIVVAAVGRPR 214 (301)
T ss_pred -CHHHHHhcCCEEEEecCChh
Confidence 24566678899998887653
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=87.12 E-value=2.6 Score=41.62 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=67.0
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKRL 179 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~~~ 179 (545)
|.|.|+ |.+|..++..|+..|- +.+++++.+..... ..+..-+.+... .+.....- ...+++
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~-~~el~l~D~~~~~~---~g~~~DL~~~~~-----------~~~~~~i~-~~~~~~- 62 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGL-ASELVLVDVNEEKA---KGDALDLSHASA-----------FLATGTIV-RGGDYA- 62 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCccHH---HHHHHhHHHhcc-----------ccCCCeEE-ECCCHH-
Confidence 467886 8899999998888742 34788887754321 111111111000 00000000 011233
Q ss_pred HhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 180 VTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 180 l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
.++++|+||.+|+..+ ...+.......|+.-.+.+++..++. ..+.++.+-|
T Consensus 63 ~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~s 115 (300)
T cd00300 63 DAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVVS 115 (300)
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcc
Confidence 5689999999999754 23345667788999999999988886 4444444333
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.3 Score=45.36 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=28.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.++|.|.||+|.+|..++..|.+.|+ .|++..|.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~---~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY---QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC---eEEEeCCC
Confidence 47899999999999999999999876 46666553
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=86.83 E-value=0.8 Score=46.14 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=27.7
Q ss_pred cEEEEeccccccchHHHHHHH-hhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLL-RSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll-~~g~~v~~V~~l~R~ 133 (545)
++|.|.||||.+|+.+++.|. .....+..++.+.-+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~ 37 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTS 37 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEch
Confidence 468999999999999999998 444455566666543
|
|
| >KOG2013|consensus | Back alignment and domain information |
|---|
Probab=86.83 E-value=3.8 Score=42.09 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=60.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..+.+|||.|| |.||..|+..|+..|. ..|..+.-..-..+...|-. +|..- |+.++.--...
T Consensus 10 i~~~riLvVGa-GGIGCELLKnLal~gf--~~IhiIDlDTIDlSNLNRQF-----LFrkk---------hVgqsKA~vA~ 72 (603)
T KOG2013|consen 10 IKSGRILVVGA-GGIGCELLKNLALTGF--EEIHIIDLDTIDLSNLNRQF-----LFRKK---------HVGQSKATVAA 72 (603)
T ss_pred hccCeEEEEec-CcccHHHHHHHHHhcC--CeeEEEeccceeccchhhhh-----eeehh---------hcCchHHHHHH
Confidence 45789999997 7799999999999864 46665544332222222211 11111 55543211111
Q ss_pred HHHHHHhcCccEEEEccccccchHHHH--HHHHH------hHHHHHHHHHHHHHc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELK--EAIRT------NMCATQTMLDLAKQC 221 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~--~~~~~------Nv~gt~~ll~~a~~~ 221 (545)
..+.++-..++++..+|....+..+.. ..+++ |..+-+.+=+.|..+
T Consensus 73 ~~v~~Fnpn~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a 127 (603)
T KOG2013|consen 73 KAVKQFNPNIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAA 127 (603)
T ss_pred HHHHHhCCCCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 223344447889888888765432221 11222 555555566666654
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=86.64 E-value=4.5 Score=40.01 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=59.7
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHHHH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKRL 179 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~~~ 179 (545)
|.|.|| |.+|..++..|...+.. .|+++.+++...... .+ + +.+.... ......+- ...+++.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~--eV~L~Di~e~~~~g~-~~-d----l~~~~~~-------~~~~~~I~-~t~d~~~ 63 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG--DVVLLDIVEGLPQGK-AL-D----ISQAAPI-------LGSDTKVT-GTNDYED 63 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc--EEEEEeCCCcHHHHH-HH-H----HHHhhhh-------cCCCeEEE-EcCCHHH
Confidence 468998 99999999988876542 788888774321111 11 0 1110000 00000000 0012443
Q ss_pred HhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 180 VTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 180 l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
++++|+||.+++... ......+....|+.-.+.+++...+.
T Consensus 64 -l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~ 105 (300)
T cd01339 64 -IAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKY 105 (300)
T ss_pred -hCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999998653 22333456677888888888877775
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.64 E-value=4.6 Score=38.45 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=31.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
.++|.|.||+|-.|+.+++.+.+. ++..-+-++.|+++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~~~~ 39 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDRPGS 39 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEecCCc
Confidence 378999999999999999999987 45656777788765
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.52 E-value=1.6 Score=45.12 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=51.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
+.+++|+|.|+ |..|+.++..|...| +..|+...|.... .+.+...++ ... - ...
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g--~~~I~V~nRt~~r---a~~La~~~~---------------~~~--~--~~~ 233 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALA--PKQIMLANRTIEK---AQKITSAFR---------------NAS--A--HYL 233 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcC--CCEEEEECCCHHH---HHHHHHHhc---------------CCe--E--ecH
Confidence 46799999997 999999999999875 4578888887321 111211100 000 0 123
Q ss_pred HHHHHHhcCccEEEEccccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF 196 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~ 196 (545)
+++.+++.++|+||++.+...+
T Consensus 234 ~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 234 SELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred HHHHHHhccCCEEEECcCCCCe
Confidence 5667778899999999887543
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.33 E-value=1.6 Score=44.11 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=32.3
Q ss_pred hhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 92 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 92 ~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+.+++.+|+|.|+ |.+|+++++.|.+.| |.++.++.-.
T Consensus 171 q~kL~~~~VaIVG~-GG~GS~Va~~LAR~G--VgeI~LVD~D 209 (393)
T PRK06153 171 SAKLEGQRIAIIGL-GGTGSYILDLVAKTP--VREIHLFDGD 209 (393)
T ss_pred HHHHhhCcEEEEcC-CccHHHHHHHHHHcC--CCEEEEECCC
Confidence 55677899999995 789999999999984 6788877554
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=86.12 E-value=2.6 Score=39.68 Aligned_cols=37 Identities=30% Similarity=0.360 Sum_probs=31.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcC--EEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVK--TIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~--~V~~l~R~~ 134 (545)
+++++|+|.|| |..|+.++..|.+.| +. +|+.+.|..
T Consensus 23 l~~~rvlvlGA-GgAg~aiA~~L~~~G--~~~~~i~ivdr~g 61 (226)
T cd05311 23 IEEVKIVINGA-GAAGIAIARLLLAAG--AKPENIVVVDSKG 61 (226)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHcC--cCcceEEEEeCCC
Confidence 45789999998 999999999998874 56 899999973
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.80 E-value=3.3 Score=40.90 Aligned_cols=110 Identities=19% Similarity=0.165 Sum_probs=64.6
Q ss_pred EeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCCCCCCCHHHHHHH
Q psy16252 102 MTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAPDLGLSPDDKRLV 180 (545)
Q Consensus 102 ITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~~lgl~~~~~~~l 180 (545)
|.|+ |.+|..++..|+..+. ..+++.+.+....... +.++ +.. .+- . .... .+. ..++ +.
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l-~~el~L~Di~~~~~~g-~a~D--l~~~~~~-~-~~~~----~i~-------~~~~-~~ 61 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGI-ADEIVLIDINKDKAEG-EAMD--LQHAASF-L-PTPK----KIR-------SGDY-SD 61 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCC-CCEEEEEeCCCChhhH-HHHH--HHHhhcc-c-CCCe----EEe-------cCCH-HH
Confidence 3464 9999999999987743 4578887775432211 1111 111 000 0 0000 111 1123 35
Q ss_pred hcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEe
Q psy16252 181 TSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVS 231 (545)
Q Consensus 181 ~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vS 231 (545)
++++|+||-+||..+- ..+..+....|+.-.+.+.+...+. +.+.++.+=
T Consensus 62 ~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivv 112 (299)
T TIGR01771 62 CKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVA 112 (299)
T ss_pred HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEe
Confidence 5899999999997542 3345677899999999999988876 444444333
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=85.66 E-value=0.66 Score=46.28 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=30.1
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.+.+|+|+||+|.+|..+++.+...|. .|+++.|++
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~---~v~~~~~~~ 197 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGA---RVIAVTRSP 197 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC---eEEEEeCCH
Confidence 468999999999999999999988754 577777653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=85.48 E-value=1.3 Score=43.59 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=45.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
.+++|+|.|+ |.+|+.++..|.+.|. +|++..|.... .++.. .+.... ...+
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga---~V~v~~r~~~~---~~~~~-------------------~~G~~~--~~~~ 202 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGA---NVTVGARKSAH---LARIT-------------------EMGLSP--FHLS 202 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEECCHHH---HHHHH-------------------HcCCee--ecHH
Confidence 5799999996 7799999999998753 67777776321 11111 110000 1224
Q ss_pred HHHHHhcCccEEEEccc
Q psy16252 176 DKRLVTSKVNLVFHCAA 192 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa 192 (545)
++.+.++++|+||+++.
T Consensus 203 ~l~~~l~~aDiVI~t~p 219 (296)
T PRK08306 203 ELAEEVGKIDIIFNTIP 219 (296)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 56777889999999864
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=85.25 E-value=1.5 Score=43.00 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=30.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
.++++++|.||.| .+++++..|...| +.+|+++.|...
T Consensus 122 ~~~k~vlvlGaGG-aarAi~~~l~~~g--~~~i~i~nRt~~ 159 (288)
T PRK12749 122 IKGKTMVLLGAGG-ASTAIGAQGAIEG--LKEIKLFNRRDE 159 (288)
T ss_pred cCCCEEEEECCcH-HHHHHHHHHHHCC--CCEEEEEeCCcc
Confidence 3578999999755 5999999998874 568999999753
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=84.90 E-value=3.7 Score=43.22 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=45.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+|.|+ |.+|.++++.|.+.|+ .|+++.|++. ++...... ....++. |.+ +.+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~---~v~vid~~~~------~~~~~~~~-------~~~~~~~gd~~------~~~~ 57 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN---DVTVIDTDEE------RLRRLQDR-------LDVRTVVGNGS------SPDV 57 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---cEEEEECCHH------HHHHHHhh-------cCEEEEEeCCC------CHHH
Confidence 57899997 9999999999998865 4667766532 12111000 0112222 554 5566
Q ss_pred HHHH-hcCccEEEEccc
Q psy16252 177 KRLV-TSKVNLVFHCAA 192 (545)
Q Consensus 177 ~~~l-~~~vd~Vih~Aa 192 (545)
+.++ ++++|.||-+..
T Consensus 58 l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 58 LREAGAEDADLLIAVTD 74 (453)
T ss_pred HHHcCCCcCCEEEEecC
Confidence 7776 678998887654
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=84.57 E-value=3.2 Score=43.16 Aligned_cols=74 Identities=22% Similarity=0.357 Sum_probs=49.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..+++|+|.|+ |-+|..++..|...| +.+|++..|+.. +...... .+... ..+.
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G--~~~V~v~~rs~~------ra~~la~---------------~~g~~--~i~~ 231 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKG--VGKILIANRTYE------RAEDLAK---------------ELGGE--AVKF 231 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCC--CCEEEEEeCCHH------HHHHHHH---------------HcCCe--EeeH
Confidence 56789999997 999999999998874 457888888642 1111111 11100 1234
Q ss_pred HHHHHHhcCccEEEEccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~ 194 (545)
+++.+.+.++|+||-+.+..
T Consensus 232 ~~l~~~l~~aDvVi~aT~s~ 251 (417)
T TIGR01035 232 EDLEEYLAEADIVISSTGAP 251 (417)
T ss_pred HHHHHHHhhCCEEEECCCCC
Confidence 56677778999999987654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=84.55 E-value=1.1 Score=42.07 Aligned_cols=34 Identities=29% Similarity=0.257 Sum_probs=28.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
|+|.|.||+|.+|..++..|.+.|+ +|.+..|++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~---~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN---KIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC---EEEEEEcCH
Confidence 5799999999999999999999875 566667753
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.27 E-value=15 Score=38.64 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=29.1
Q ss_pred hhhhhcCcEEE----EeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 91 LDDFYEGAEIL----MTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 91 ~~~~~~~~~Vl----ITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
+..+-.+..++ |+||+|-+|.++++.|...|. .|++..++
T Consensus 28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~---~v~~~~~~ 71 (450)
T PRK08261 28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY---DVVANNDG 71 (450)
T ss_pred ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC---eeeecCcc
Confidence 33444566777 889999999999999988765 56665443
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.26 E-value=2.2 Score=41.42 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=26.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPR 123 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~ 123 (545)
+.||+|.|.|.+|.+|+-++..|+++|..
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~gat 184 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNAT 184 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCCE
Confidence 47899999999999999999999998653
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=84.22 E-value=3 Score=40.80 Aligned_cols=37 Identities=30% Similarity=0.226 Sum_probs=30.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.++++|+|.|| |..|+.++..|.+.| +.+|+++.|+.
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G--~~~i~I~nRt~ 159 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLG--VTDITVINRNP 159 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcC--CCeEEEEeCCH
Confidence 35789999986 889999999999884 56899998874
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=84.19 E-value=8.7 Score=37.21 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=26.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
++|.|.|++|.+|+.+++.+.+. ++..-|.+..|.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence 57999999999999999999875 444334444444
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.12 E-value=2.6 Score=41.36 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=28.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI 130 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l 130 (545)
+.||+|.|.|.+|.+|+.++..|++.|+ .|.+.
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~---tVtv~ 188 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANA---TVTIA 188 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCC---EEEEE
Confidence 4799999999999999999999999875 45544
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=83.80 E-value=2.3 Score=41.35 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=28.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.+++++|+|+ |.+|+.++..|.+.|. +|++..|..
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~---~v~v~~R~~ 150 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADC---NVIIANRTV 150 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 4689999998 8999999999998753 677777763
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=83.75 E-value=1.2 Score=46.71 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=30.4
Q ss_pred CCCCCChhhhcCCCeEEEEcchhhhHHHHHHHHHhh
Q psy16252 3 TSSPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRS 38 (545)
Q Consensus 3 ~~~~~~~~~~~~~~~~f~~Ggts~l~~~Ll~~l~~~ 38 (545)
|.+.|+...-++++++|+|||+||+|.+|+..|...
T Consensus 35 ~~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~ 70 (442)
T PLN02572 35 TPSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKR 70 (442)
T ss_pred CCCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHC
Confidence 445566666778899999999999999999999985
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=83.70 E-value=2.4 Score=41.93 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=27.0
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+|||.|+ |.+|..++..|...| +.++..+....
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~G--vg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTG--FGEIHIIDLDT 33 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhc--CCeEEEEcCCC
Confidence 4899996 889999999999985 56888776553
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=83.53 E-value=2.4 Score=42.13 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=48.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..+++|+|.|+ |-+|..++..|...| ...|++..|+... .+.+...++. +. .+.
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g--~~~V~v~~r~~~r---a~~la~~~g~--------------~~------~~~ 229 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKG--VAEITIANRTYER---AEELAKELGG--------------NA------VPL 229 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcC--CCEEEEEeCCHHH---HHHHHHHcCC--------------eE------EeH
Confidence 36899999997 999999999998753 4578888886421 1111110000 11 133
Q ss_pred HHHHHHhcCccEEEEcccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
+++.+.+.++|+||-+.+...
T Consensus 230 ~~~~~~l~~aDvVi~at~~~~ 250 (311)
T cd05213 230 DELLELLNEADVVISATGAPH 250 (311)
T ss_pred HHHHHHHhcCCEEEECCCCCc
Confidence 456677788999999987644
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=83.36 E-value=1.4 Score=44.31 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=45.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..|++|.|.|- |-||+.+++.|...|. +|++..|...... .. .. |...
T Consensus 148 L~gktvgIiG~-G~IG~~vA~~l~~~G~---~V~~~d~~~~~~~----~~-------------------~~-----~~~~ 195 (333)
T PRK13243 148 VYGKTIGIIGF-GRIGQAVARRAKGFGM---RILYYSRTRKPEA----EK-------------------EL-----GAEY 195 (333)
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHHCCC---EEEEECCCCChhh----HH-------------------Hc-----CCEe
Confidence 57899999995 9999999999988764 6777777543210 00 00 1112
Q ss_pred HHHHHHhcCccEEEEcccc
Q psy16252 175 DDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~ 193 (545)
.++.++++++|+|+-+...
T Consensus 196 ~~l~ell~~aDiV~l~lP~ 214 (333)
T PRK13243 196 RPLEELLRESDFVSLHVPL 214 (333)
T ss_pred cCHHHHHhhCCEEEEeCCC
Confidence 3577888899998877654
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.25 E-value=3.7 Score=39.97 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=25.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFP 122 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~ 122 (545)
+.|++|+|.|.++.+|+-|+..|++.|.
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~a 183 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAGA 183 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC
Confidence 4689999999999999999999998753
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=82.92 E-value=4.1 Score=39.46 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=24.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
++|.|.| .|.+|+.+++.|.+.+.++.-+.+..|.
T Consensus 2 mrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVG-CGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 5789999 5999999999998753233334344443
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=82.87 E-value=1.3 Score=43.48 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=30.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.++++|+|.|+ |..|++++..|...| +.+|+++.|..
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G--~~~I~I~nR~~ 161 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLG--VERLTIFDVDP 161 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcC--CCEEEEECCCH
Confidence 35689999997 669999999999884 56899888874
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.85 E-value=1.5 Score=45.32 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=29.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
..|++|+|.|. |.+|+.++..|...|. +|++..+.+
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga---~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGA---RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEcCCc
Confidence 47899999995 8999999999988754 577666653
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=82.77 E-value=3.2 Score=39.24 Aligned_cols=115 Identities=13% Similarity=0.067 Sum_probs=62.4
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHH-----Hhh---HHH-HHHhhhhcCCC--ccc---C
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRI-----DKM---LDT-VAISLKFTCST--SKE---S 164 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~---~~~-~~~~~~~~~~~--~~~---D 164 (545)
+|+|.| .|.+|..+++.|...| +.++..+....-..+...|. .++ ... ....++.-++. +.. +
T Consensus 1 kVlvvG-~GGlG~eilk~La~~G--vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMG--FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcC--CCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 478888 5889999999999985 56888877664333222221 000 000 12223222221 111 2
Q ss_pred CCCCCCCCCHHH-HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 165 AQAPDLGLSPDD-KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 165 l~~~~lgl~~~~-~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
+.. .++ -...++++|+||.+... +..-+.+-++|... + +++|..++.+..|.
T Consensus 78 i~~------~~~~~~~f~~~~DvVi~a~Dn--------------~~aR~~ln~~c~~~-~-iplI~~g~~G~~G~ 130 (234)
T cd01484 78 VGP------EQDFNDTFFEQFHIIVNALDN--------------IIARRYVNGMLIFL-I-VPLIESGTEGFKGN 130 (234)
T ss_pred CCh------hhhchHHHHhCCCEEEECCCC--------------HHHHHHHHHHHHHc-C-CCEEEEcccCCceE
Confidence 321 111 13556788999886432 22223455677765 4 57888877655554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.72 E-value=6.5 Score=38.06 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.8
Q ss_pred cEEEEeccccccchHHHHHHHhh
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRS 120 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~ 120 (545)
++|.|.|. |.+|+.+++.|.+.
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhC
Confidence 58999998 99999999998875
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=82.43 E-value=1.3 Score=44.81 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=25.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEec
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R 132 (545)
++|.|+||||++|++|++.|..+ +++ .|..+.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~-~l~~v~~ 33 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYF-ELAKVVA 33 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEEE
Confidence 47899999999999999988775 334 4555543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=82.30 E-value=3.2 Score=41.21 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=47.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..+++|.|.| .|-||+.+++.|...|. +|++..|..+... .+.. + ...
T Consensus 134 l~g~tvgIvG-~G~IG~~vA~~l~afG~---~V~~~~~~~~~~~-------------------------~~~~--~-~~~ 181 (312)
T PRK15469 134 REDFTIGILG-AGVLGSKVAQSLQTWGF---PLRCWSRSRKSWP-------------------------GVQS--F-AGR 181 (312)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCC---EEEEEeCCCCCCC-------------------------Ccee--e-ccc
Confidence 4689999998 79999999999998764 6777776543211 0000 0 023
Q ss_pred HHHHHHhcCccEEEEccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~ 194 (545)
.++.++++++|+|+.+....
T Consensus 182 ~~l~e~l~~aDvvv~~lPlt 201 (312)
T PRK15469 182 EELSAFLSQTRVLINLLPNT 201 (312)
T ss_pred ccHHHHHhcCCEEEECCCCC
Confidence 46888999999998876643
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.25 E-value=4.4 Score=39.36 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=25.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFP 122 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~ 122 (545)
+.|++|+|.|-+..+|+-|+..|++.+.
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~a 184 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAGC 184 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCC
Confidence 4589999999999999999999998753
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=81.94 E-value=1.7 Score=43.89 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=26.3
Q ss_pred cEEEEeccccccchHHHHHHHhhC-CCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSF-PRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g-~~v~~V~~l~R~ 133 (545)
++|.|.||||++|..|++.|+.+- ..+.+++.+..+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~ 38 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS 38 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch
Confidence 578999999999999999777762 233345555443
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=81.88 E-value=12 Score=38.88 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=28.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
+...+|+|.|++| +|..++..|+..| |..+..+.-.
T Consensus 18 L~~s~VlliG~gg-lGsEilKNLvL~G--Ig~~tIvD~~ 53 (425)
T cd01493 18 LESAHVCLLNATA-TGTEILKNLVLPG--IGSFTIVDGS 53 (425)
T ss_pred HhhCeEEEEcCcH-HHHHHHHHHHHcC--CCeEEEECCC
Confidence 4568999999776 9999999999974 6677776544
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=81.59 E-value=3.7 Score=44.37 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=32.1
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+.+++.+|||.|+ |.||..+++.|++. +|.++..+..+.
T Consensus 334 ekL~~~kVLIvGa-GGLGs~VA~~La~~--GVg~ItlVD~D~ 372 (664)
T TIGR01381 334 ERYSQLKVLLLGA-GTLGCNVARCLIGW--GVRHITFVDNGK 372 (664)
T ss_pred HHHhcCeEEEECC-cHHHHHHHHHHHHc--CCCeEEEEcCCE
Confidence 4567889999996 88999999999998 467888776653
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=81.44 E-value=3 Score=43.46 Aligned_cols=74 Identities=20% Similarity=0.352 Sum_probs=48.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..+++|+|.|+ |-+|..++..|...| ..+|++..|... +...... .+... ..+.
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G--~~~V~v~~r~~~------ra~~la~---------------~~g~~--~~~~ 233 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKG--VRKITVANRTLE------RAEELAE---------------EFGGE--AIPL 233 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCC--CCeEEEEeCCHH------HHHHHHH---------------HcCCc--EeeH
Confidence 56799999996 999999999998774 457888888642 2111111 11100 0133
Q ss_pred HHHHHHhcCccEEEEccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~ 194 (545)
+++.+.+.++|+||.+.+..
T Consensus 234 ~~~~~~l~~aDvVI~aT~s~ 253 (423)
T PRK00045 234 DELPEALAEADIVISSTGAP 253 (423)
T ss_pred HHHHHHhccCCEEEECCCCC
Confidence 45666778899999987654
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=81.20 E-value=3.6 Score=40.94 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=28.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.|.+|+|+||+|.+|..+++.+...|. +|++..+++
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~---~vi~~~~s~ 178 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGC---KVIGCAGSD 178 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 478999999999999988777766643 577777653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.81 E-value=4.5 Score=39.57 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=30.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
++++|+|.|| |..|++++..|.+.| +.+|+++.|..
T Consensus 126 ~~k~vlilGa-GGaarAi~~aL~~~g--~~~i~i~nR~~ 161 (283)
T PRK14027 126 KLDSVVQVGA-GGVGNAVAYALVTHG--VQKLQVADLDT 161 (283)
T ss_pred CCCeEEEECC-cHHHHHHHHHHHHCC--CCEEEEEcCCH
Confidence 4689999997 889999999999874 56888888863
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=80.71 E-value=5.3 Score=34.46 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=27.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI 130 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l 130 (545)
++||+|.|.|.+.-+|+.|+..|.++|. .|...
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga---tV~~~ 58 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA---TVYSC 58 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEe
Confidence 5799999999999999999999998753 45443
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.67 E-value=2.3 Score=44.48 Aligned_cols=34 Identities=29% Similarity=0.254 Sum_probs=28.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
|+|.|.||+|.+|..++..|.+.|+ .|.+..|++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~---~V~v~~r~~ 34 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF---EVIVTGRDP 34 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC---EEEEEECCh
Confidence 5799999999999999999999875 577777764
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=80.67 E-value=4 Score=39.91 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=59.2
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
.|+.|.|+|+.| ||..=+..-.+-|. +|+++.++.+.. ++.++.+ ..+.+-|.++ +++
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~---rV~vis~~~~kk--eea~~~L-----------GAd~fv~~~~-----d~d 238 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGM---RVTVISTSSKKK--EEAIKSL-----------GADVFVDSTE-----DPD 238 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCc---EEEEEeCCchhH--HHHHHhc-----------CcceeEEecC-----CHH
Confidence 589999999999 99766655555565 789998885321 2222211 1111113332 556
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecc
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA 233 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~ 233 (545)
.++.+.+..|.++|++.... ..++ .-++.+++.. ..+|.++-.
T Consensus 239 ~~~~~~~~~dg~~~~v~~~a-~~~~-----------~~~~~~lk~~---Gt~V~vg~p 281 (360)
T KOG0023|consen 239 IMKAIMKTTDGGIDTVSNLA-EHAL-----------EPLLGLLKVN---GTLVLVGLP 281 (360)
T ss_pred HHHHHHHhhcCcceeeeecc-ccch-----------HHHHHHhhcC---CEEEEEeCc
Confidence 67777777788888765431 1111 1345556554 367877754
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=80.51 E-value=14 Score=36.11 Aligned_cols=120 Identities=16% Similarity=0.077 Sum_probs=64.3
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHH--------HHhhHHH-HHHhhhhcCCCcccC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQR--------IDKMLDT-VAISLKFTCSTSKES 164 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~r--------l~~~~~~-~~~~~~~~~~~~~~D 164 (545)
.+.+.+|||.|+ |.||..++..|...| |+.|.......-..+...| +...... ....+++-++.+--+
T Consensus 16 kL~~s~VLIvG~-gGLG~EiaKnLalaG--Vg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~ 92 (286)
T cd01491 16 KLQKSNVLISGL-GGLGVEIAKNLILAG--VKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVT 92 (286)
T ss_pred HHhcCcEEEEcC-CHHHHHHHHHHHHcC--CCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEE
Confidence 355689999996 679999999999985 6677766544322211111 1110111 223333323211111
Q ss_pred CCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 165 AQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 165 l~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
..... ++ .+.+.+.|+||.+... ++.. ..+-++|++. + .+||+..+.+.+|.
T Consensus 93 ~~~~~--~~----~~~l~~fdvVV~~~~~------~~~~--------~~in~~c~~~-~-ipfI~a~~~G~~G~ 144 (286)
T cd01491 93 VSTGP--LT----TDELLKFQVVVLTDAS------LEDQ--------LKINEFCHSP-G-IKFISADTRGLFGS 144 (286)
T ss_pred EEecc--CC----HHHHhcCCEEEEecCC------HHHH--------HHHHHHHHHc-C-CEEEEEeccccEEE
Confidence 11111 12 2345678888887542 2222 2344678775 4 47888888766654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 545 | ||||
| 4dqv_A | 478 | Crystal Structure Of Reductase (R) Domain Of Non-Ri | 1e-09 |
| >pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal Peptide Synthetase From Mycobacterium Tuberculosis Length = 478 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 545 | |||
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 3e-52 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 9e-13 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 9e-15 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 7e-11 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 1e-08 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 9e-08 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 3e-07 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 9e-07 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 1e-06 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 1e-06 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 2e-06 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 8e-06 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 8e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 4e-05 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 1e-04 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 8e-04 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 4e-04 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 7e-04 |
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 3e-52
Identities = 71/345 (20%), Positives = 128/345 (37%), Gaps = 40/345 (11%)
Query: 86 ASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK 145
+ E +L+TGATGFLG+ L+ +LLR + +VRA+ ++ ++R++K
Sbjct: 62 TAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEK 121
Query: 146 MLDTVAISLKFTCSTSKES--------AQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFD 197
D+ L PDLGL R + V+L+ AA +
Sbjct: 122 TFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAF 181
Query: 198 EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELL 257
E N+ T ++ +A K LK FTYVSTA + + + ++E
Sbjct: 182 -PYHELFGPNVAGTAELIRIALTTK-LKPFTYVSTADVGAAIE---------PSAFTE-- 228
Query: 258 KISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCE--EAQFFPVCIFRPSIVIST 315
D + + Y +K A E LL E + PV +FR ++++
Sbjct: 229 ------DADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILAD 282
Query: 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKA-------DIVPADLVVNALICA 368
+ + +++ G+ +PD + D +P V A+
Sbjct: 283 TSYAGQLNMSDWV-TRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVL 341
Query: 369 PWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIP 413
+ Y+ +N D+ + E++ ++ G I
Sbjct: 342 GARVA---GSSLAGFATYHVMNPHDDGIGLDEYVDWLIEAGYPIR 383
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 9e-13
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 4 SSPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK 63
++ E +L+TGATGFLG+ L+ +LLR + +VRA+ ++ ++R++K
Sbjct: 62 TAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEK 121
Query: 64 MLDT 67
D+
Sbjct: 122 TFDS 125
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 9e-15
Identities = 45/322 (13%), Positives = 82/322 (25%), Gaps = 81/322 (25%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+ GATG LG + + +I R L +
Sbjct: 16 YAVLGATGLLGHHAARAIRA---AGHDLVLIHRPSSQIQR-------LAYLEP------- 58
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAI-RTNMCATQTMLDLA 218
E A ++ L ++ V A + + + T
Sbjct: 59 ---ECRVA-EM-LDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAAC 113
Query: 219 KQCKNLKMFTYVSTA---FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRER 275
Q + + YV +A + E Y
Sbjct: 114 LQAR-VPRILYVGSAYAMPRHPQGLPGHE---------------------GLFYDSLPSG 151
Query: 276 LSHENMNTYTLTKAAAEQLLCEEAQF-FPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLV 334
S Y L K A ++ E+A+ PV I P +V+ D ++
Sbjct: 152 KSS-----YVLCKWALDEQAREQARNGLPVVIGIPGMVLG------EL--DIGPTTGRVI 198
Query: 335 TGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH--ERFHKDPSCLPIYNYVNSK 392
T G + + + +++ A L+ A G ER+ +
Sbjct: 199 TAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALERGRIGERY--------LLT----- 242
Query: 393 DNPLTWGEFITKSLKE-GVKIP 413
+ L + + + G P
Sbjct: 243 GHNLEMADLTRRIAELLGQPAP 264
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 46/283 (16%), Positives = 82/283 (28%), Gaps = 78/283 (27%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYV-IVRAKKNQSPQQRIDKMLDTVAISLKFTC 158
IL+TG++G +G L+ L + + I IV+ +D + + I
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLD-VSNRDEI------ 54
Query: 159 STSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATL--RFDEELKEAIRTNMCATQTMLD 216
D+ + ++ +FH A L + +++ A + NM T +L+
Sbjct: 55 -----------------DRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILE 97
Query: 217 LAKQCKNLKMFTYVST--AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRE 274
AKQ ++ ST F + +
Sbjct: 98 AAKQH-RVEKVVIPSTIGVFG-----------------------------PETPKNKVPS 127
Query: 275 RLSHENMNTYTLTKAAAEQLLCE--EAQFFPVCIFRPSIVISTWKEP-------IPGWID 325
+ +TK AAE L E V R +IS EP
Sbjct: 128 ITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFY 187
Query: 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICA 368
A + P+ ++ + AL+
Sbjct: 188 Y----------AVKREKYKCYLAPNRALPMMYMPDALKALVDL 220
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 1e-08
Identities = 42/268 (15%), Positives = 80/268 (29%), Gaps = 78/268 (29%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+ + GA+G G++L++++L + +I R +K ++ ++ +
Sbjct: 21 VFILGASGETGRVLLKEILEQ-GLFSKVTLIGR-RKLTFDEEAYKN-VNQEVVDF----- 72
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
DD ++ F C T R + +R + +LAK
Sbjct: 73 ------------EKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
K F +S+ ++
Sbjct: 121 AG-GCKHFNLLSSKGADKSSN--------------------------------------- 140
Query: 280 NMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPG-WIDNLYGPTGLVTGAQ 338
Y K E + EE +F +FRP +++ +E PG W+ +
Sbjct: 141 --FLYLQVKGEVEAKV-EELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFG-------- 189
Query: 339 AGVVRTFLVDPDVKADIVPADLVVNALI 366
L D VP VV A++
Sbjct: 190 ------SLPDSWASGHSVPVVTVVRAML 211
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 9e-08
Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 65/294 (22%)
Query: 87 SPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKM 146
S + +++G I + GA G +G+ L ++L++ P+
Sbjct: 4 SSGRENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAP---- 59
Query: 147 LDTVAISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATL--RFDEELKEAI 204
+ ++ + DL + ++LV ++ +++FH AA + + + +
Sbjct: 60 -AGFSGAVDARAA---------DLSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGY 109
Query: 205 RTNMCATQTMLDLAKQC----KNLKMFTYVSTA--FSNSYRKNIEEIIYKAHTHYSELLK 258
R N+ T+ + D + + S+ F I +
Sbjct: 110 RINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDE------------- 156
Query: 259 ISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCE--EAQFFPVCIFRPSIVISTW 316
P + +Y KA E LL + FF R +
Sbjct: 157 ----FHTTP-------------LTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRP 199
Query: 317 KEPIPGWIDNLYGPTGLVTG----AQAGVVRTFLVDPDVKADIVPADLVVNALI 366
+P +G + G V ++ V LI
Sbjct: 200 GKPNA-------AASGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLI 246
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 42/270 (15%), Positives = 71/270 (26%), Gaps = 86/270 (31%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+++ G GF+G L+++LL V V +D +
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQ----VHV-----------VDNL------------L 67
Query: 160 TSKES--AQAPDLGL------SPDDKRLVTSKVNLVFHCAA---TLRFDEELKEAIRTNM 208
++++ P + + + + VFH A + N
Sbjct: 68 SAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNT 127
Query: 209 CATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPK 268
T + + K K LK Y + I K D
Sbjct: 128 LTTLKLYERLKHFKRLKKVVYSAAG----------CSIA------------EKTFDDAKA 165
Query: 269 YQETRERLSHENMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGWIDN 326
+ET H N + Y+++K E + P R N
Sbjct: 166 TEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQ---------------N 210
Query: 327 LYGP---------TGLVTGAQAGVVRTFLV 347
+YGP G V TF+
Sbjct: 211 VYGPGEILGAGRWRGTPATVWRNVTPTFIY 240
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 9e-07
Identities = 55/283 (19%), Positives = 83/283 (29%), Gaps = 64/283 (22%)
Query: 101 LMTGATGFLGKLLIEKLLR--SFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC 158
L+ G TG +G L E L + +Y + R + + +
Sbjct: 5 LIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR-----RTRPAWHEDNPINYVQC---- 55
Query: 159 STSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATL---RFDEELKEAIRTNMCATQTML 215
D+ PDD + S + V H R E+ E N + +L
Sbjct: 56 ----------DI-SDPDDSQAKLSPLTDVTHVFYVTWANRSTEQ--ENCEANSKMFRNVL 102
Query: 216 D-LAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRE 274
D + C NLK + + + K++ DP Y E
Sbjct: 103 DAVIPNCPNLKHISLQTGRKH----------------YMGPFESYGKIESHDPPYTEDLP 146
Query: 275 RLSHENMNTYTLTKAAAEQLLCEEAQF---FPVCIFRPSIVISTWKEPIPGWIDNLYGPT 331
RL + N E ++ EE + + RP + P + NL G
Sbjct: 147 RLKYMN------FYYDLEDIMLEEVEKKEGLTWSVHRPGNIFG----FSPYSMMNLVGTL 196
Query: 332 GLVTGAQAGVVRTFLVDPDVKA------DIVPADLVVNALICA 368
V A L KA D ADL+ I A
Sbjct: 197 C-VYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWA 238
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 48/302 (15%), Positives = 84/302 (27%), Gaps = 114/302 (37%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
I++TGA GF+GK L L + I+ + Q+ ++ ++ L
Sbjct: 3 IVITGAKGFVGKNLKADLTST--TDHHIFEV----HRQTKEEELESALL----------- 45
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
K + + H A R + + KE N+ +LD+
Sbjct: 46 -----------------------KADFIVHLAGVNRPEHD-KEFSLGNVSYLDHVLDILT 81
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
+ S+S
Sbjct: 82 RNTKKPAILL-----SSS-------------IQA-------------------------T 98
Query: 280 NMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGA 337
N Y +K EQLL E A+ + V I+R NL+G
Sbjct: 99 QDNPYGESKLQGEQLLREYAEEYGNTVYIYRWP---------------NLFGKWC--KPN 141
Query: 338 QAGVVRTF-----------LVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386
V+ TF + D +V+ + D +V + A + P+ ++
Sbjct: 142 YNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPNVF 201
Query: 387 NY 388
Sbjct: 202 KV 203
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 45/256 (17%), Positives = 79/256 (30%), Gaps = 69/256 (26%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV------RAKKNQSPQQRIDKMLDTVAIS 153
IL+TG GF+G L + P+ K V+V + + + + +
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAK---VVVLDKFRSNTLFSNNRPSSLGHFKNLIGFK 69
Query: 154 LKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAA---TLRFDEELKEAIRTNMCA 210
+ A D+ D +RL + +FH AA T ++EL ++TN A
Sbjct: 70 GEV---------IAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQEL--VMKTNYQA 118
Query: 211 TQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQ 270
+L++A+ K Y S+A +Y + P
Sbjct: 119 FLNLLEIARSKK--AKVIYASSA-G----------VYG--------------NTKAPN-- 149
Query: 271 ETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330
+ N Y +K ++ + + R N+YGP
Sbjct: 150 --VVGKNESPENVYGFSKLCMDEFVLSHSNDNVQVGLRYF---------------NVYGP 192
Query: 331 TGLVTGAQAGVVRTFL 346
A +V
Sbjct: 193 REFYKEKTASMVLQLA 208
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 28/234 (11%), Positives = 65/234 (27%), Gaps = 66/234 (28%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TGA G LG+++ E+L + + + SP + V L
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEIL----RLA----DLSPLDPAGPNEECVQCDLA---- 53
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
D + + + + + H + ++ ++ ++ N+ + + A+
Sbjct: 54 ---------D----ANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNIIGLYNLYEAAR 99
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
+ S+ HT P+ + +
Sbjct: 100 AH-GQPRIVFASS----------------NHTIG-----------YYPQTERLGPDVPAR 131
Query: 280 NMNTYTLTKAAAEQLLCEEAQFF------PVCIFRPSIVISTWKEP--IPGWID 325
Y ++K E L A+ + + R + W
Sbjct: 132 PDGLYGVSKCFGENL----ARMYFDKFGQETALVRIGSCTPEPNNYRMLSTWFS 181
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 28/237 (11%), Positives = 53/237 (22%), Gaps = 79/237 (33%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TGA G +G + L V R+ D V
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEV-----------------RL---SDIV--------D 36
Query: 160 TSKESAQAP----DLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTML 215
A DL + + + H + + + ++ N+ +
Sbjct: 37 LGAAEAHEEIVACDL-ADAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQANIIGAYNLY 94
Query: 216 DLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRER 275
+ A+ + S+ HT P+
Sbjct: 95 EAARNL-GKPRIVFASSN----------------HTIG-----------YYPRTTRIDTE 126
Query: 276 LSHENMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGWIDNLYGP 330
+ + Y L+K E L F R + +
Sbjct: 127 VPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIG---------------SCFPK 168
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 40/162 (24%)
Query: 84 GTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP-QQR 142
G+ S P+ + + IL+TG TG GK + K+L + K I V R + QS
Sbjct: 8 GSMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSRDELKQSEMAME 66
Query: 143 IDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKRL--VTSKVNLVFHCAATLRFDEEL 200
+ ++F +G D +RL V++ H AA L
Sbjct: 67 FNDP------RMRFF------------IGDVRDLERLNYALEGVDICIHAAA-------L 101
Query: 201 K----------EAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232
K E I+TN+ +++ + + +ST
Sbjct: 102 KHVPIAEYNPLECIKTNIMGASNVINACLKN-AISQVIALST 142
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 1e-05
Identities = 65/467 (13%), Positives = 135/467 (28%), Gaps = 148/467 (31%)
Query: 37 RSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIRNRPNQTIMGTASPPSLDDFYE 96
+ R++ + +A P + + I G
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNV-------------------LIDG------------ 157
Query: 97 GAEILMTGATGFLGK-LLIEKLLRSFPRVKT----IYVIVRAKKNQSPQQRIDKMLDTVA 151
+ G+ GK + + S+ I+ + K SP+ ++ +
Sbjct: 158 -----VLGS----GKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQK--- 204
Query: 152 ISLKFTCSTSKESAQAPDLGLSPDD-----KRLVTSKVNLVFHCAATLRFDE-ELKEAIR 205
+ + + + S + ++ L +RL+ SK + L + +A
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENCLLVLLNVQNAKAWN 260
Query: 206 TNMCATQTMLDLAKQCKNLKMFT---YVSTAFSNSYRKNI--EEIIYKAHTHYSE--LLK 258
+L CK L + T V+ S + +I + + LLK
Sbjct: 261 A--------FNL--SCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 259 ISKLDVDD-PK-------------------YQETRERLSHENMNTYTLT-KAAAEQLLCE 297
D P+ T + H N + T +++ L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 298 EAQ--FFPVCIFRPSIVISTWKEPIPG------WIDNLYGPTGLVTGAQAGVVRTFLVDP 349
E + F + +F PS IP W D + +V + + LV+
Sbjct: 370 EYRKMFDRLSVFPPSA-------HIPTILLSLIWFDVIKSDVMVVV---NKLHKYSLVEK 419
Query: 350 DVKA------DI-------VPADLVVNALICAPWNGHERFHKDPSCLP-----IYNYV-- 389
K I + + ++ I +N + F D P Y+++
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 390 --NSKDNPLTWGE---------FITKSLK-EGVKIPSSQTRTNLLQD 424
+ ++P F+ + ++ + +S + N LQ
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 27/138 (19%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTI-YVIVRAKKNQSPQQRIDKMLDTVAISLKFTC 158
IL+ GA G +G L +KL + + I I + + + +
Sbjct: 5 ILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVV------------ 52
Query: 159 STSKESAQAPDLGLSPDDKRLVTS-KVNLVFHCAATL--RFDEELKEAIRTNMCATQTML 215
+ + LV K+ ++ AA L ++ A NM + +L
Sbjct: 53 ----------NALDFNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVL 102
Query: 216 DLAKQCKNLKMFTYVSTA 233
+LAK +K + S+
Sbjct: 103 NLAKAK-KIKKIFWPSSI 119
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 78/219 (35%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+ GATG G+ L++++L P + + R + P+
Sbjct: 8 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHPRLDNPVG------------- 53
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEA---IRTNMCATQTMLD 216
L ++ F C T + +EA + ++ L
Sbjct: 54 ---------PLAELLPQLD---GSIDTAFCCLGTTIKEAGSEEAFRAVDFDLP-----LA 96
Query: 217 LAKQCK--NLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRE 274
+ K+ + + VS +++
Sbjct: 97 VGKRALEMGARHYLVVSALGADAKSSIF-------------------------------- 124
Query: 275 RLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVI 313
Y K EQ L +E + + I RPS++
Sbjct: 125 ---------YNRVKGELEQAL-QEQGWPQLTIARPSLLF 153
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIRNR 77
+L+ GATG G+ L++++L P + + R + P+ ++ +
Sbjct: 8 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHPRLDNPVG-PLAELLPQLDGS 65
Query: 78 PNQTI--MGT--ASPPSLDDFY 95
+ +GT S + F
Sbjct: 66 IDTAFCCLGTTIKEAGSEEAFR 87
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 38/235 (16%), Positives = 66/235 (28%), Gaps = 77/235 (32%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
I +TG TGFLG+ ++E + I+ + +
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTP-----II-----------LTRS------------I 36
Query: 160 TSKESAQAP-DLG-LSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDL 217
+K + + +D + V+ V H AAT ++ N TQ + D
Sbjct: 37 GNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATRGSQGKI-SEFHDNEILTQNLYDA 95
Query: 218 AKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLS 277
+ N+ Y ST S Y D E+
Sbjct: 96 CYEN-NISNIVYASTI-S----------AY-----------------SDETSLPWNEKEL 126
Query: 278 HENMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGWIDNLYGP 330
Y ++K A E + ++ + R + +LYG
Sbjct: 127 PLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFA---------------HLYGF 166
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 32/236 (13%), Positives = 68/236 (28%), Gaps = 68/236 (28%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+ GA G + + L+ +L +VR + +Q ++ + A +
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPV---AMVR-----NEEQ-GPELRERGASDI----- 69
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCA-ATLRFDEELKEAIRTNMCATQTMLDLA 218
+ +D + ++ V A + + I ++ + A
Sbjct: 70 ---------VVANLEEDFSHAFASIDAVVFAAGSGPHTGADKTILI--DLWGAIKTIQEA 118
Query: 219 KQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSH 278
++ + +K F VS+ + DP
Sbjct: 119 EK-RGIKRFIMVSS-----------------------------VGTVDP-------DQGP 141
Query: 279 ENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVIS---TWKEPIPGWIDNLYGPT 331
NM Y + K A+ L + I RP + + T K + +
Sbjct: 142 MNMRHYLVAKRLADDEL--KRSSLDYTIVRPGPLSNEESTGKVTVSPHFSEITRSI 195
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 545 | |||
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.98 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.98 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.98 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.97 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.97 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.97 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.97 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.97 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.97 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.97 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.97 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.97 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.97 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.97 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.97 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.97 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.97 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.97 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.97 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.97 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.97 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.97 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.97 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.97 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.97 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.97 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.96 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.96 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.96 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.96 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.96 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.96 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.96 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.96 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.96 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.96 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.96 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.96 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.96 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.96 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.96 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.96 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.96 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.96 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.96 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.96 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.95 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.95 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.95 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.95 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.95 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.95 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.95 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.95 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.95 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.94 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.94 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.94 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.94 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.94 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.94 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.93 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.93 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.93 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.93 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.93 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.92 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.91 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.91 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.9 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.9 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.9 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.89 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.89 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.89 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.88 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.88 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.87 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.86 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.86 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.85 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.84 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.84 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.82 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.81 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.8 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.8 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.8 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.8 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.8 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.8 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.79 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.79 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.79 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.78 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.78 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.78 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.78 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.78 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.78 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.77 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.77 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.77 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.77 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.76 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.76 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.76 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.76 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.76 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.76 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.76 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.76 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.76 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.76 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.76 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.76 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.75 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.75 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.75 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.75 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.75 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.75 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.75 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.75 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.75 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.75 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.75 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.75 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.75 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.75 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.75 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.74 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.74 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.74 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.74 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.74 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.74 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.74 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.74 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.74 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.74 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.74 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.74 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.74 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.73 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.73 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.73 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.73 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.73 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.73 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.73 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.73 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.73 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.73 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.73 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.73 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.73 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.73 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.73 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.72 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.72 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.72 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.72 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.72 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.72 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.72 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.72 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.72 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.72 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.72 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.72 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.72 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.72 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.72 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.72 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.72 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.72 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.72 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.72 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.72 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.71 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.71 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.71 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.71 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.71 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.71 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.71 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.71 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.71 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.71 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.71 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.71 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.71 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.71 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.71 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.71 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.71 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.71 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.71 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.71 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.7 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.7 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.7 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.7 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.7 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.7 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.7 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.7 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.7 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.7 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.7 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.7 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.7 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.7 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.7 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.7 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.7 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.7 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.7 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.7 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.7 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.7 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.7 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.7 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.69 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.69 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.69 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.69 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.69 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.69 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.69 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.69 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.69 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.69 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.69 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.69 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.68 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.68 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.68 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.68 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.68 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.68 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.68 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.68 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.68 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.68 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.67 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.67 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.67 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.66 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.66 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.66 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.66 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.66 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.66 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.66 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.65 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.65 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.65 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.65 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.64 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.63 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.63 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.63 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.63 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.62 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.62 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.61 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.61 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.61 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.6 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.59 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.59 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.59 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.58 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.58 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.57 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.56 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.55 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.55 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.54 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.54 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.53 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.53 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.51 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.51 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.5 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.5 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.47 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.46 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.46 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.45 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.44 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.41 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.27 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.2 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.12 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.12 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.08 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.06 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.03 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 98.97 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 98.96 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 98.91 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 98.9 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 98.86 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.68 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.55 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.51 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.43 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.37 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.36 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.16 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 97.89 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.73 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.66 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.64 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 97.53 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 97.48 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.39 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 97.36 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.34 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.16 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.05 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.01 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.87 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.47 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 96.42 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.34 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.33 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.29 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 95.32 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.32 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.29 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.25 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 95.15 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 95.1 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.07 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 95.06 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 94.99 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 94.89 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.85 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 94.83 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.78 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 94.72 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 94.62 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.61 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.59 | |
| 2cq8_A | 110 | 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH | 94.59 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.55 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.5 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 94.5 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 94.34 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 94.3 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 94.2 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 94.13 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 93.98 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.95 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 93.93 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 93.92 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 93.66 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 93.62 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.59 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.42 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 93.33 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 93.3 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 93.24 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.19 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.19 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 93.17 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.09 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 93.06 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 93.0 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 92.99 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 92.99 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 92.94 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 92.93 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.84 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 92.84 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.81 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 92.79 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 92.79 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 92.78 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 92.78 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 92.67 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 92.6 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.59 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 92.46 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.43 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 92.37 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.37 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 92.33 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 92.3 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 92.04 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 91.87 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 91.79 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 91.67 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 91.55 | |
| 1dny_A | 91 | Non-ribosomal peptide synthetase peptidyl carrier | 91.28 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 91.27 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 91.14 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 91.07 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 91.05 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 90.97 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 90.96 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 90.9 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 90.83 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.8 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 90.5 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 90.32 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 90.17 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 90.08 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 89.91 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 89.61 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 89.42 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 89.25 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 89.24 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 89.02 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 88.92 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 88.79 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 88.78 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 88.53 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 88.42 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 88.25 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 88.24 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 88.19 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 88.03 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 88.0 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 87.95 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 87.86 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 87.78 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 87.61 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 87.58 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 87.44 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 87.2 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 87.19 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 86.72 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 86.5 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 86.49 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 86.3 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 86.13 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 86.02 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 85.97 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 85.84 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 85.29 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 85.24 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 85.14 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 84.31 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 84.02 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 83.96 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 83.9 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 83.76 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 83.7 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 83.62 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 83.54 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 83.39 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 83.21 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 83.16 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 82.9 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 82.67 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 82.45 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 82.16 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 81.44 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 81.37 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 81.29 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 80.68 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 80.6 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 80.52 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 80.43 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 80.42 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 80.32 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 80.26 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 80.2 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 80.04 |
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=315.65 Aligned_cols=403 Identities=15% Similarity=0.137 Sum_probs=221.8
Q ss_pred hcCCCeEEEEcchhhhHHHHHHHHHhhCCC---ccEEEE---------EecccCCCChHHHHHHhhhch-hhHHHHhhCC
Q psy16252 12 FYEGAEILMTGATGFLGKLLIEKLLRSFPR---VKTIYV---------IVRAKKNQSPQQRIDKMLDTV-AIIELIRNRP 78 (545)
Q Consensus 12 ~~~~~~~f~~Ggts~l~~~Ll~~l~~~~~~---v~~i~~---------lir~~~~~~~~~r~~~~~~~~-~~~~~~~~~~ 78 (545)
.-.+++||.+||+|+++.+|+.+|.+ ++. +..||. .++...... ....++. .+.+.+....
T Consensus 63 i~~~~~ff~lGg~Sl~a~~l~~~~~~-~~~~~~~~~~~~~~t~~~la~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 136 (508)
T 4f6l_B 63 VGVDDDFFELGGNSLEAMLVVSHLKR-FGHHISMQTLYQYKTVRQIVNYMYQNQQSL-----VALPDNLSELQKIVMSRY 136 (508)
T ss_dssp --------------------------------------------------------------CCCCSTHHHHHHHHHHHH
T ss_pred CCCCCChHHcCchHHHHHHHHHHHHH-cCCCccHHHHhcCCcHHHHHHHHHhhcccc-----ccchhhhHHHHHHhhhcc
Confidence 34578999999999999999999975 433 333333 233211100 0000000 0111111100
Q ss_pred CccccCCCCCCchhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHH----Hhh
Q psy16252 79 NQTIMGTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVA----ISL 154 (545)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~----~~~ 154 (545)
. .+. .. ........|+|||||||||||++|+++|++.| .+|+|++|+.....+.+++...+...+ ...
T Consensus 137 ~---~~~-~~-~~~~~~~~~~VLVTGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~ 208 (508)
T 4f6l_B 137 N---LGI-LE-DSLSHRPLGNTLLTGATGFLGAYLIEALQGYS---HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEM 208 (508)
T ss_dssp T---TCC-CS-TTSCBCCCEEEEESCTTSHHHHHHHHHTBTTE---EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred c---ccc-cc-cccccCCCCeEEEECCccchHHHHHHHHHhcC---CEEEEEECCCChHHHHHHHHHHHHHhcccccchh
Confidence 0 000 00 00011235899999999999999999997764 489999998765445555555443311 112
Q ss_pred hhcCCCccc-CCCC-CCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 155 KFTCSTSKE-SAQA-PDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 155 ~~~~~~~~~-Dl~~-~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
...++.++. |+.+ +.++ +..++|+|||+||.+++..+++.++++|+.||.+++++|.+ +.++|||+||
T Consensus 209 ~~~~v~~v~~Dl~d~~~l~--------~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~--~~~~~v~iSS 278 (508)
T 4f6l_B 209 MLSNIEVIVGDFECMDDVV--------LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVST 278 (508)
T ss_dssp HSTTEEEEEEBTTBCSSCC--------CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT--TTCEEEEEEE
T ss_pred ccCceEEEecCCcccccCC--------CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh--CCCcEEEeCC
Confidence 223455666 9987 4443 66899999999999988888888999999999999999998 5689999999
Q ss_pred cccccCC-------CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCE
Q psy16252 233 AFSNSYR-------KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPV 304 (545)
Q Consensus 233 ~~v~~~~-------~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~ 304 (545)
.++ +.. .++.|+.... .....+.|+.||+.+|++++++. .|+++
T Consensus 279 ~~v-G~~~~~~~~~~~~~E~~~~~---------------------------~~~~~~~Y~~sK~~~E~~~~~~~~~gi~~ 330 (508)
T 4f6l_B 279 ISV-GTYFDIDTEDVTFSEADVYK---------------------------GQLLTSPYTRSKFYSELKVLEAVNNGLDG 330 (508)
T ss_dssp SCT-TSEECTTCSCCEECTTCSCS---------------------------SBCCCSHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hhh-ccCCccCCcCcccccccccc---------------------------cccCCCcHHHHHHHHHHHHHHHHHcCCCE
Confidence 998 432 1233322110 01234899999999999999987 89999
Q ss_pred EEEccceeeccCCCCCCCCccCc--cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCC
Q psy16252 305 CIFRPSIVISTWKEPIPGWIDNL--YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSC 382 (545)
Q Consensus 305 ~i~Rp~~i~g~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~ 382 (545)
+|+|||.|||+...+. +..+. .....++.....+.... .+.++..++++||||+|++++.++..+..
T Consensus 331 ~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~g~~~~~~v~v~DvA~ai~~~~~~~~~-------- 399 (508)
T 4f6l_B 331 RIVRVGNLTSPYNGRW--HMRNIKTNRFSMVMNDLLQLDCIG-VSMAEMPVDFSFVDTTARQIVALAQVNTP-------- 399 (508)
T ss_dssp EEEEECCEESCSSSCC--CCTTCTTCHHHHHHHHHTTCSEEE-TTGGGSEEECEEHHHHHHHHHHHTTBCCS--------
T ss_pred EEEecceeccCCCCCc--ccCCcchHHHHHHHHHHHHcCCCC-CCccCceEEEEcHHHHHHHHHHHHhCCCC--------
Confidence 9999999999875432 11111 11234555554433221 13357899999999999999999876544
Q ss_pred CCEEEeecCCCCcccHHHHHHHHHHhhcccCCCCCCCCccccCcceeecCcchhhhHHHHHhHHHHhhhhccCCCCchhH
Q psy16252 383 LPIYNYVNSKDNPLTWGEFITKSLKEGVKIPSSQTRTNLLQDGQGSVRSRTIQYPGVGVGQLQRAVHVDPSTRGGPGSIS 462 (545)
Q Consensus 383 ~~vy~i~~~~~~~~t~~el~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~d~~~~G~~~~~~ 462 (545)
+++||++++ ++++|.|+++.+.+.. ..+.+ .+.|.. .+...|.+.+..
T Consensus 400 ~~~~nl~~~--~~~s~~el~~~i~~~~-~~~~~----~~~w~~-------------------------~l~~~~~~~~~~ 447 (508)
T 4f6l_B 400 QIIYHVLSP--NKMPVKSLLECVKRKE-IELVS----DESFNE-------------------------ILQKQDMYETIG 447 (508)
T ss_dssp CSEEEESCS--CEEEHHHHHHHHHSSC-CEEEC----HHHHHH-------------------------HHHTTCCHHHHH
T ss_pred CCEEEeCCC--CCCCHHHHHHHHHHcC-CcccC----HHHHHH-------------------------HHHhcCCccchh
Confidence 789999998 8999999999999865 11111 112211 000001100110
Q ss_pred HHhhhccccccccCeeEeecchHHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHHH
Q psy16252 463 VQYSGPRLGRLSAREWEWDNSNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVH 523 (545)
Q Consensus 463 ~~~~~~~~~~f~~~~~~f~~~~~~~l~~~~~~~d~~~f~~d~~~~~w~~y~~~~~~g~~~~ 523 (545)
+ .........+.|++.++.+.+.. ++|....++ ++|++.++.-++.+
T Consensus 448 ~-----~~~~~~~~~~~~d~~~~~~~l~~--------~G~~~~~~~-~~~l~~~~~~~~~~ 494 (508)
T 4f6l_B 448 L-----TSVDREQQLAMIDTTLTLKIMNH--------ISEKWPTIT-NNWLYHWAQYIKTI 494 (508)
T ss_dssp H-----HHTGGGSEECEECCHHHHHHHHH--------HSCCCCCCC-HHHHHHHHHHHHHH
T ss_pred c-----ccccccCcceecchHHHHHHHHH--------cCCCCCCCC-HHHHHHHHHHHHHH
Confidence 0 00111233678999999888876 355556655 77888887777775
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-33 Score=280.88 Aligned_cols=264 Identities=19% Similarity=0.134 Sum_probs=202.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|+|||||||||||++|+++|++.|+ +|++++|...... ..+...... +......+++++. |+. +
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~Dl~------d 90 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ---VVIGLDNFSTGHQ--YNLDEVKTL-VSTEQWSRFCFIEGDIR------D 90 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCH--HHHHHHHHT-SCHHHHTTEEEEECCTT------C
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCCCch--hhhhhhhhc-cccccCCceEEEEccCC------C
Confidence 4579999999999999999999999875 7999999765431 222211110 0000002344444 887 7
Q ss_pred HHHHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
.+.+..+++++|+|||+||..... ..+...+++|+.|+.+++++|++. ++++|||+||.++++... +++|+...
T Consensus 91 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~~~~ 169 (351)
T 3ruf_A 91 LTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA-QVQSFTYAASSSTYGDHPALPKVEENIG 169 (351)
T ss_dssp HHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCCSSBCTTCCC
T ss_pred HHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEecHHhcCCCCCCCCccCCCC
Confidence 788999999999999999976533 334668899999999999999997 799999999999997643 45554433
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
.| .+.|+.||+.+|++++.+. .+++++|+||+.|||+...+...+.
T Consensus 170 ~p------------------------------~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~-- 217 (351)
T 3ruf_A 170 NP------------------------------LSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYA-- 217 (351)
T ss_dssp CC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTC--
T ss_pred CC------------------------------CChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchh--
Confidence 22 2789999999999999876 6899999999999998765432111
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc-ccccCCCCCCCCEEEeecCCCCcccHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG-HERFHKDPSCLPIYNYVNSKDNPLTWGEFITKS 405 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~-~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l 405 (545)
.....++..+..|....++++++..+++|||+|+|++++.++... .. .+++||++++ +++|+.|+++.+
T Consensus 218 -~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~-------~~~~~ni~~~--~~~s~~e~~~~i 287 (351)
T 3ruf_A 218 -AVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSA-------KDNIYNVAVG--DRTTLNELSGYI 287 (351)
T ss_dssp -CHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGG-------CSEEEEESCS--CCEEHHHHHHHH
T ss_pred -hHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhcccc-------CCCEEEeCCC--CcccHHHHHHHH
Confidence 112455666667776677888999999999999999999988762 32 4789999998 899999999999
Q ss_pred HHhhcccC
Q psy16252 406 LKEGVKIP 413 (545)
Q Consensus 406 ~~~~~~~~ 413 (545)
.+.+|..+
T Consensus 288 ~~~~g~~~ 295 (351)
T 3ruf_A 288 YDELNLIH 295 (351)
T ss_dssp HHHHHTTC
T ss_pred HHHhCccc
Confidence 99988743
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=280.12 Aligned_cols=255 Identities=20% Similarity=0.142 Sum_probs=195.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
.++|+|||||||||||++|+++|++.|+++ +|+++.|....... .++... ....+.+++. |+. +
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~-~v~~~~~~~~~~~~-~~l~~~-------~~~~~~~~~~~Dl~------d 86 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETY-KIINFDALTYSGNL-NNVKSI-------QDHPNYYFVKGEIQ------N 86 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTE-EEEEEECCCTTCCG-GGGTTT-------TTCTTEEEEECCTT------C
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCc-EEEEEeccccccch-hhhhhh-------ccCCCeEEEEcCCC------C
Confidence 457999999999999999999999998643 78888886533221 111110 0011333444 877 7
Q ss_pred HHHHHHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC---Cccccc
Q psy16252 174 PDDKRLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR---KNIEEI 245 (545)
Q Consensus 174 ~~~~~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~---~~i~E~ 245 (545)
.+.+..++++ +|+|||+||..... ..+...+++|+.|+.+++++|++. ++++|||+||.++++.. .++.|+
T Consensus 87 ~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~vy~~~~~~~~~~E~ 165 (346)
T 4egb_A 87 GELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PHIKLVQVSTDEVYGSLGKTGRFTEE 165 (346)
T ss_dssp HHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHS-TTSEEEEEEEGGGGCCCCSSCCBCTT
T ss_pred HHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeCchHHhCCCCcCCCcCCC
Confidence 7889999887 99999999987543 455678899999999999999997 88999999999999864 245554
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
....| .+.|+.||+.+|++++.++ .+++++++||+.|||+...+.
T Consensus 166 ~~~~p------------------------------~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~--- 212 (346)
T 4egb_A 166 TPLAP------------------------------NSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE--- 212 (346)
T ss_dssp SCCCC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT---
T ss_pred CCCCC------------------------------CChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCcc---
Confidence 33322 2789999999999999876 599999999999999865321
Q ss_pred ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHH
Q psy16252 324 IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFIT 403 (545)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~ 403 (545)
.....++..+..|....++++++...++|+|+|+|++++.++..... +++||++++ +++++.|+++
T Consensus 213 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~--------g~~~~i~~~--~~~s~~e~~~ 278 (346)
T 4egb_A 213 ----KLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGRV--------GEVYNIGGN--NEKTNVEVVE 278 (346)
T ss_dssp ----SHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCCT--------TCEEEECCS--CCEEHHHHHH
T ss_pred ----chHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCCC--------CCEEEECCC--CceeHHHHHH
Confidence 12245566666776666778899999999999999999999887655 789999998 8899999999
Q ss_pred HHHHhhccc
Q psy16252 404 KSLKEGVKI 412 (545)
Q Consensus 404 ~l~~~~~~~ 412 (545)
.+.+.+|..
T Consensus 279 ~i~~~~g~~ 287 (346)
T 4egb_A 279 QIITLLGKT 287 (346)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHhCCC
Confidence 999998874
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-33 Score=275.10 Aligned_cols=240 Identities=20% Similarity=0.117 Sum_probs=191.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|||||||||||++|+++|++.|+ +|++++|++.... +. ..+++. |+. .+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~----~~-------------~~~~~~~Dl~-------~~ 54 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN---TPIILTRSIGNKA----IN-------------DYEYRVSDYT-------LE 54 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCCC----------------------CCEEEECCCC-------HH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCCCCccc----CC-------------ceEEEEcccc-------HH
Confidence 37899999999999999999999875 7999999832211 11 222222 543 46
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCCCCH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAHTHY 253 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~~~~ 253 (545)
.+.++++++|+|||+||..... .+...+++|+.++.+++++|++. ++++|||+||.++++... +++|+..+.|
T Consensus 55 ~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~ll~a~~~~-~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p--- 129 (311)
T 3m2p_A 55 DLINQLNDVDAVVHLAATRGSQ-GKISEFHDNEILTQNLYDACYEN-NISNIVYASTISAYSDETSLPWNEKELPLP--- 129 (311)
T ss_dssp HHHHHTTTCSEEEECCCCCCSS-SCGGGTHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCCCGGGCSBCTTSCCCC---
T ss_pred HHHHhhcCCCEEEEccccCCCC-ChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccHHHhCCCCCCCCCCCCCCCC---
Confidence 7889999999999999987655 45667899999999999999997 799999999999998643 4555443322
Q ss_pred HHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCccchH
Q psy16252 254 SELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPT 331 (545)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~ 331 (545)
.+.|+.||+.+|++++.+. .+++++|+||+.|||+...+. ....
T Consensus 130 ---------------------------~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-------~~~~ 175 (311)
T 3m2p_A 130 ---------------------------DLMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN-------YMIN 175 (311)
T ss_dssp ---------------------------SSHHHHHHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--C-------CHHH
T ss_pred ---------------------------CchhHHHHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCC-------CHHH
Confidence 2789999999999999876 699999999999999865431 1234
Q ss_pred HHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhcc
Q psy16252 332 GLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVK 411 (545)
Q Consensus 332 ~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~ 411 (545)
.++..+..|....++++++...++++++|+|++++.++..+.. +++||++++ +++|+.|+++.+.+.+|.
T Consensus 176 ~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~~--------~~~~~i~~~--~~~s~~e~~~~i~~~~g~ 245 (311)
T 3m2p_A 176 RFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKV--------SGTFNIGSG--DALTNYEVANTINNAFGN 245 (311)
T ss_dssp HHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTTC--------CEEEEECCS--CEECHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCCC--------CCeEEeCCC--CcccHHHHHHHHHHHhCC
Confidence 5666667777776778889999999999999999999876644 789999998 899999999999999887
Q ss_pred c
Q psy16252 412 I 412 (545)
Q Consensus 412 ~ 412 (545)
.
T Consensus 246 ~ 246 (311)
T 3m2p_A 246 K 246 (311)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=277.35 Aligned_cols=260 Identities=18% Similarity=0.087 Sum_probs=195.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHh--hCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLR--SFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~--~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+|||||||||||++|+++|++ .|+ +|+++.|.........+....+.. ...+......++. |++
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~----- 78 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPKA---KVVVLDKFRSNTLFSNNRPSSLGH-FKNLIGFKGEVIAADIN----- 78 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTTS---EEEEEECCCCC-------CCCCCC-GGGGTTCCSEEEECCTT-----
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCCC---eEEEEECCCccccccccchhhhhh-hhhccccCceEEECCCC-----
Confidence 4679999999999999999999999 654 799999976521111100000000 0111112233444 887
Q ss_pred CCHHHHHHH-hcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-cccccccC
Q psy16252 172 LSPDDKRLV-TSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-NIEEIIYK 248 (545)
Q Consensus 172 l~~~~~~~l-~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-~i~E~~~~ 248 (545)
+.+.+..+ ..++|+|||+||.... ...++..+++|+.|+.+++++|++. +++ |||+||+++++... +++|+...
T Consensus 79 -d~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~-~V~~SS~~vyg~~~~~~~E~~~~ 155 (362)
T 3sxp_A 79 -NPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSK-KAK-VIYASSAGVYGNTKAPNVVGKNE 155 (362)
T ss_dssp -CHHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHT-TCE-EEEEEEGGGGCSCCSSBCTTSCC
T ss_pred -CHHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHc-CCc-EEEeCcHHHhCCCCCCCCCCCCC
Confidence 67788888 7899999999997654 3556788999999999999999987 676 99999999988754 45554332
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCcc
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLY 328 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~ 328 (545)
.| .+.|+.||+.+|++++.+...++++++||++|||+...+...+. .
T Consensus 156 ~p------------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~lR~~~v~Gp~~~~~~~~~---~ 202 (362)
T 3sxp_A 156 SP------------------------------ENVYGFSKLCMDEFVLSHSNDNVQVGLRYFNVYGPREFYKEKTA---S 202 (362)
T ss_dssp CC------------------------------SSHHHHHHHHHHHHHHHTTTTSCEEEEEECSEESTTCGGGGGGS---C
T ss_pred CC------------------------------CChhHHHHHHHHHHHHHHhccCCEEEEEeCceeCcCCCCCCcch---h
Confidence 22 27899999999999999875599999999999998654321110 1
Q ss_pred chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 329 GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 329 ~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
....++..+..|....++++++...++++|+|||++++.++..... + +||++++ +++++.|+++.+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~~~--------g-~~~i~~~--~~~s~~e~~~~i~~~ 271 (362)
T 3sxp_A 203 MVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQKS--------G-VYNVGYS--QARSYNEIVSILKEH 271 (362)
T ss_dssp HHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCSSC--------E-EEEESCS--CEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcCCC--------C-EEEeCCC--CCccHHHHHHHHHHH
Confidence 2245666667777666678888999999999999999999876544 5 9999998 899999999999999
Q ss_pred hc
Q psy16252 409 GV 410 (545)
Q Consensus 409 ~~ 410 (545)
++
T Consensus 272 ~g 273 (362)
T 3sxp_A 272 LG 273 (362)
T ss_dssp HC
T ss_pred cC
Confidence 88
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=262.46 Aligned_cols=262 Identities=17% Similarity=0.113 Sum_probs=193.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCH-HHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP-QQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
.+|+|||||||||||++|+++|++.|+ +|+++.|....... .+++.. .......++. |++ +
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~~Dl~------d 66 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGY---DVVIADNLVNSKREAIARIEK--------ITGKTPAFHETDVS------D 66 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECCCSSSCTHHHHHHHH--------HHSCCCEEECCCTT------C
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCC---cEEEEecCCcchHHHHHHHHh--------hcCCCceEEEeecC------C
Confidence 468999999999999999999999976 68899987654322 111111 1112334444 887 6
Q ss_pred HHHHHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccc
Q psy16252 174 PDDKRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEII 246 (545)
Q Consensus 174 ~~~~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~ 246 (545)
.+.+.++++ ++|+|||+||..... ......+++|+.++.+++++|++. ++++|||+||.++++... +++|+.
T Consensus 67 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g~~~~~~~~e~~ 145 (341)
T 3enk_A 67 ERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER-AVKRIVFSSSATVYGVPERSPIDETF 145 (341)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGBCSCSSSSBCTTS
T ss_pred HHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEecceEecCCCCCCCCCCC
Confidence 788888888 899999999987543 334577899999999999999997 789999999999987643 355543
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeeccCCCCCCCC
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
...| .+.|+.||+.+|++++.++ .+++++++||++|||+...+..|.
T Consensus 146 ~~~~------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~ 195 (341)
T 3enk_A 146 PLSA------------------------------TNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGE 195 (341)
T ss_dssp CCBC------------------------------SSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCC
T ss_pred CCCC------------------------------CChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCC
Confidence 2222 2789999999999998875 459999999999999865443332
Q ss_pred ccCc--cchHHHHHHHhcCc--eeEEec------CCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCC
Q psy16252 324 IDNL--YGPTGLVTGAQAGV--VRTFLV------DPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKD 393 (545)
Q Consensus 324 ~~~~--~~~~~~~~~~~~g~--~~~~~~------~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~ 393 (545)
.... .....++.....+. ...+++ +++..++++||+|||++++.++..... ...+++||++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~-----~~~~~~~ni~~~-- 268 (341)
T 3enk_A 196 DPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALER-----RDASLTVNLGTG-- 268 (341)
T ss_dssp CCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHH-----HTSCEEEEESCS--
T ss_pred CcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhc-----CCcceEEEeCCC--
Confidence 2111 12223444433332 223445 778899999999999999999876311 013789999998
Q ss_pred CcccHHHHHHHHHHhhccc
Q psy16252 394 NPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 394 ~~~t~~el~~~l~~~~~~~ 412 (545)
+++|+.|+++.+.+.+|..
T Consensus 269 ~~~s~~e~~~~i~~~~g~~ 287 (341)
T 3enk_A 269 RGYSVLEVVRAFEKASGRA 287 (341)
T ss_dssp CCEEHHHHHHHHHHHHCSC
T ss_pred CceeHHHHHHHHHHHhCCC
Confidence 8999999999999998864
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=268.91 Aligned_cols=249 Identities=16% Similarity=0.107 Sum_probs=190.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
.++|+|||||||||||++|++.|++.|+ +|+++.|..... ...++. |+. +
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~--------------------~~~~~~~Dl~------d 67 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGR---TVRGFDLRPSGT--------------------GGEEVVGSLE------D 67 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTC---CEEEEESSCCSS--------------------CCSEEESCTT------C
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC---EEEEEeCCCCCC--------------------CccEEecCcC------C
Confidence 5679999999999999999999999976 688899986431 223333 777 7
Q ss_pred HHHHHHHhcCccEEEEccccccchH-HHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC--C--cccccccC
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFDE-ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR--K--NIEEIIYK 248 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~~-~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~--~--~i~E~~~~ 248 (545)
.+.+..+++++|+|||+||...... ..+..+++|+.|+.+++++|++. ++++|||+||.++++.. . ++.|....
T Consensus 68 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~ 146 (347)
T 4id9_A 68 GQALSDAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAA-GVRRFVFASSGEVYPENRPEFLPVTEDHPL 146 (347)
T ss_dssp HHHHHHHHTTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGTTTTSCSSSSBCTTSCC
T ss_pred HHHHHHHHhCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCHHHhCCCCCCCCCcCCCCCC
Confidence 7889999999999999999876533 34788999999999999999996 89999999999999862 1 34554322
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceee-------------
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVI------------- 313 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~------------- 313 (545)
.| .+.|+.||+.+|++++.+. .+++++|+||+.||
T Consensus 147 ~~------------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~ 196 (347)
T 4id9_A 147 CP------------------------------NSPYGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFS 196 (347)
T ss_dssp CC------------------------------CSHHHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSH
T ss_pred CC------------------------------CChHHHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccC
Confidence 22 2789999999999999876 68999999999999
Q ss_pred ccCCCCCCCCcc----CccchHHHHHHHhcCceeEEecCCCCcccc----eehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 314 STWKEPIPGWID----NLYGPTGLVTGAQAGVVRTFLVDPDVKADI----VPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 314 g~~~~~~~g~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
|+...+.+.+.. .......++.....|....++++++...++ ++|+|+|++++.++..+.. .+++
T Consensus 197 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~-------~~~~ 269 (347)
T 4id9_A 197 GPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARNENGRPFRMHITDTRDMVAGILLALDHPEA-------AGGT 269 (347)
T ss_dssp HHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGGG-------TTEE
T ss_pred CCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCCCcccCCccCcEeHHHHHHHHHHHhcCccc-------CCCe
Confidence 653221000000 001113345555666665677888888899 9999999999999988744 3789
Q ss_pred EEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 386 YNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 386 y~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
||++++ +++|+.|+++.+.+.+|..
T Consensus 270 ~ni~~~--~~~s~~e~~~~i~~~~g~~ 294 (347)
T 4id9_A 270 FNLGAD--EPADFAALLPKIAALTGLP 294 (347)
T ss_dssp EEESCS--SCEEHHHHHHHHHHHHCCC
T ss_pred EEECCC--CcccHHHHHHHHHHHhCCC
Confidence 999998 8999999999999998763
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.5e-31 Score=261.52 Aligned_cols=246 Identities=14% Similarity=0.070 Sum_probs=184.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|||||||||||++|+++|++.|+ +.... ....+++. |+. +
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---------~~~~~-------------------~~~~~~~~~D~~------d 49 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG---------LPGED-------------------WVFVSSKDADLT------D 49 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC---------CTTCE-------------------EEECCTTTCCTT------S
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC---------ccccc-------------------ccccCceecccC------C
Confidence 4679999999999999999999999875 11000 00111222 666 6
Q ss_pred HHHHHHHhcC--ccEEEEccccccc----hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--ccccc
Q psy16252 174 PDDKRLVTSK--VNLVFHCAATLRF----DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEI 245 (545)
Q Consensus 174 ~~~~~~l~~~--vd~Vih~Aa~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~ 245 (545)
.+.+.+++++ +|+|||+||.+.. ...+...+++|+.||.+++++|++. ++++|||+||.++++... +++|+
T Consensus 50 ~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~ 128 (319)
T 4b8w_A 50 TAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV-GARKVVSCLSTCIFPDKTTYPIDET 128 (319)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGGGSCSSCCSSBCGG
T ss_pred HHHHHHHHhhcCCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEEcchhhcCCCCCCCcccc
Confidence 7888888886 9999999998642 2345678899999999999999997 799999999999998643 45554
Q ss_pred ccCC-CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCC
Q psy16252 246 IYKA-HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPG 322 (545)
Q Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g 322 (545)
.... +. .....+|+.||+.+|++++.+. .+++++|+||+.|||+...+...
T Consensus 129 ~~~~~~~--------------------------~p~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~ 182 (319)
T 4b8w_A 129 MIHNGPP--------------------------HNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIE 182 (319)
T ss_dssp GGGBSCC--------------------------CSSSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTT
T ss_pred ccccCCC--------------------------CCCcchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCc
Confidence 3110 00 0111369999999999998876 68999999999999987653221
Q ss_pred CccCccchHHHHHH----HhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccH
Q psy16252 323 WIDNLYGPTGLVTG----AQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTW 398 (545)
Q Consensus 323 ~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~ 398 (545)
.. .....++.. +..|....++++++...+++||+|+|++++.++..... ..+++||++++ +++|+
T Consensus 183 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~------~~~~~~ni~~~--~~~s~ 251 (319)
T 4b8w_A 183 DG---HVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNE------VEPIILSVGEE--DEVSI 251 (319)
T ss_dssp TS---CHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCCC------SSCEEECCCGG--GCEEH
T ss_pred cc---cccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhcccc------CCceEEEecCC--CceeH
Confidence 11 111223333 55666666778899999999999999999999887433 13679999998 89999
Q ss_pred HHHHHHHHHhhccc
Q psy16252 399 GEFITKSLKEGVKI 412 (545)
Q Consensus 399 ~el~~~l~~~~~~~ 412 (545)
.|+++.+.+.+|..
T Consensus 252 ~e~~~~i~~~~g~~ 265 (319)
T 4b8w_A 252 KEAAEAVVEAMDFH 265 (319)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998864
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-30 Score=262.95 Aligned_cols=260 Identities=17% Similarity=0.130 Sum_probs=194.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|||||||||||++|+++|++.|+ +|++++|..... .+++...... +.......+.++. |+. +
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~Dl~------d 92 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQ---KVVGLDNFATGH--QRNLDEVRSL-VSEKQWSNFKFIQGDIR------N 92 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCC--HHHHHHHHHH-SCHHHHTTEEEEECCTT------S
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCccc--hhhHHHHhhh-cccccCCceEEEECCCC------C
Confidence 4578999999999999999999999875 789999975432 1222221111 0000012334444 877 6
Q ss_pred HHHHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
.+.+.++++++|+|||+||..... ..+...+++|+.++.+++++|.+. ++++|||+||.++++... +++|+..+
T Consensus 93 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~~~E~~~~ 171 (352)
T 1sb8_A 93 LDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDHPGLPKVEDTIG 171 (352)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCCSSBCTTCCC
T ss_pred HHHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHhcCCCCCCCCCCCCCC
Confidence 788999999999999999976532 345678899999999999999997 889999999999987643 34444322
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
.| .+.|+.||+.+|.+++.++ .+++++++||+.|||+...+...+.
T Consensus 172 ~~------------------------------~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~-- 219 (352)
T 1sb8_A 172 KP------------------------------LSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYA-- 219 (352)
T ss_dssp CC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTC--
T ss_pred CC------------------------------CChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchh--
Confidence 22 2789999999999998875 5899999999999998654321110
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc-ccccCCCCCCCCEEEeecCCCCcccHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG-HERFHKDPSCLPIYNYVNSKDNPLTWGEFITKS 405 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~-~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l 405 (545)
.....++..+..|....++++++...++++++|+|++++.++... .. .+++||++++ +++|+.|+++.+
T Consensus 220 -~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~-------~~~~~ni~~~--~~~s~~e~~~~i 289 (352)
T 1sb8_A 220 -AVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDA-------RNQVYNIAVG--GRTSLNQLFFAL 289 (352)
T ss_dssp -CHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGG-------CSEEEEESCS--CCEEHHHHHHHH
T ss_pred -hHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhccccC-------CCceEEeCCC--CCccHHHHHHHH
Confidence 112334555556666556788889999999999999999887652 22 3789999998 899999999999
Q ss_pred HHhh
Q psy16252 406 LKEG 409 (545)
Q Consensus 406 ~~~~ 409 (545)
.+.+
T Consensus 290 ~~~~ 293 (352)
T 1sb8_A 290 RDGL 293 (352)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9998
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-30 Score=262.95 Aligned_cols=321 Identities=13% Similarity=0.048 Sum_probs=222.0
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh-hcCCCccc-CCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK-FTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~-~~~~~~~~-Dl~~~~lg 171 (545)
.+++|+|||||||||||++|+++|++.|+ +|++++|+....... . ..+. .....++. |+.
T Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~---~-------~~~~~~~~~~~~~~Dl~----- 67 (357)
T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYSLTAPTVPSL---F-------ETARVADGMQSEIGDIR----- 67 (357)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCSSSSCH---H-------HHTTTTTTSEEEECCTT-----
T ss_pred hhCCCEEEEECCCchHHHHHHHHHHhCCC---eEEEEeCCCcccchh---h-------HhhccCCceEEEEcccc-----
Confidence 46689999999999999999999999875 799999976543211 0 0010 11233444 877
Q ss_pred CCHHHHHHHhcC--ccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---ccc
Q psy16252 172 LSPDDKRLVTSK--VNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---NIE 243 (545)
Q Consensus 172 l~~~~~~~l~~~--vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---~i~ 243 (545)
+.+.+..++++ +|+|||+||.... ...+...+++|+.|+.+++++|.+.+++++|||+||.++++... ++.
T Consensus 68 -d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~ 146 (357)
T 1rkx_A 68 -DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYR 146 (357)
T ss_dssp -CHHHHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBC
T ss_pred -CHHHHHHHHHhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCC
Confidence 66788888876 8999999996432 23456788999999999999999874489999999999988643 233
Q ss_pred ccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----------cCCCEEEEcccee
Q psy16252 244 EIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----------QFFPVCIFRPSIV 312 (545)
Q Consensus 244 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----------~~l~~~i~Rp~~i 312 (545)
|+.... ..+.|+.||+.+|++++.+. .+++++++||+.|
T Consensus 147 E~~~~~------------------------------~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v 196 (357)
T 1rkx_A 147 ENEAMG------------------------------GYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNV 196 (357)
T ss_dssp TTSCBC------------------------------CSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCE
T ss_pred CCCCCC------------------------------CCCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeecee
Confidence 332111 12789999999999998875 2899999999999
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSK 392 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~ 392 (545)
||+...+.. .....++..+..|....+ ++++...+++||+|+|++++.++..... .....+++||++++.
T Consensus 197 ~G~~~~~~~------~~~~~~~~~~~~g~~~~~-~~~~~~~~~v~v~Dva~a~~~~~~~~~~---~~~~~~~~~ni~~~~ 266 (357)
T 1rkx_A 197 IGGGDWALD------RIVPDILRAFEQSQPVII-RNPHAIRPWQHVLEPLSGYLLLAQKLYT---DGAEYAEGWNFGPND 266 (357)
T ss_dssp ECTTCCCSS------CHHHHHHHHHHTTCCEEC-SCTTCEECCEETHHHHHHHHHHHHHHHH---TCGGGCSEEECCCCG
T ss_pred eCCCCCccc------cHHHHHHHHHhcCCCEEE-CCCCCeeccEeHHHHHHHHHHHHHhhhh---cCCCCCceEEECCCC
Confidence 998542211 112345555556655433 4567889999999999999988864210 000136899999742
Q ss_pred CCcccHHHHHHHHHHhhcccCCCCCCCCccccCcceeecCcchhhhHHHHHhHHHHhhhhccCCCCchhHHHhhhccccc
Q psy16252 393 DNPLTWGEFITKSLKEGVKIPSSQTRTNLLQDGQGSVRSRTIQYPGVGVGQLQRAVHVDPSTRGGPGSISVQYSGPRLGR 472 (545)
Q Consensus 393 ~~~~t~~el~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~d~~~~G~~~~~~~~~~~~~~~~ 472 (545)
.+++|+.|+++.+.+.+|..... . .+... .+
T Consensus 267 ~~~~s~~e~~~~i~~~~g~~~~~-~------~~~~~------------------------------------------~~ 297 (357)
T 1rkx_A 267 ADATPVKNIVEQMVKYWGEGASW-Q------LDGNA------------------------------------------HP 297 (357)
T ss_dssp GGCEEHHHHHHHHHHHHCTTCCE-E------C------------------------------------------------
T ss_pred CCcccHHHHHHHHHHHhCCCCcc-c------cCCCC------------------------------------------CC
Confidence 26899999999999998763211 0 11000 00
Q ss_pred cccCeeEeecchHHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCCCCCChHH
Q psy16252 473 LSAREWEWDNSNVQSMWTLVPAGDRVRFPFNIRDLDWDDYLRAYVRGTLVHHLQDKLDPVTR 534 (545)
Q Consensus 473 f~~~~~~f~~~~~~~l~~~~~~~d~~~f~~d~~~~~w~~y~~~~~~g~~~~~~ke~~~~~~~ 534 (545)
.....+.++++++++.++. .+ ..+|++-+++++.-.+++.-+.++..+..
T Consensus 298 ~~~~~~~~d~~k~~~~lG~-----------~p-~~~l~e~l~~~~~~~~~~~~~~~~~~~~~ 347 (357)
T 1rkx_A 298 HEAHYLKLDCSKAKMQLGW-----------HP-RWNLNTTLEYIVGWHKNWLSGTDMHEYSI 347 (357)
T ss_dssp -CCCCCCBCCHHHHHHHCC-----------CC-CCCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCcccccCCHHHHHHHhCC-----------Cc-CCcHHHHHHHHHHHHHHHhcCCccceeeh
Confidence 1122456888888886644 22 24899999998888888776666444443
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-32 Score=285.88 Aligned_cols=286 Identities=23% Similarity=0.287 Sum_probs=203.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-------HHHhhhhcCCCccc-CCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-------VAISLKFTCSTSKE-SAQ 166 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-------~~~~~~~~~~~~~~-Dl~ 166 (545)
.++|+|||||||||||++|+++|++.++...+|++++|+.....+.+++...+.. .+......++.++. |++
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 150 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS 150 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence 4579999999999999999999999832114899999987655555555543321 11111223455555 999
Q ss_pred CCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccc
Q psy16252 167 APDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEE 244 (545)
Q Consensus 167 ~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E 244 (545)
++++|++.+.+..+++++|+|||+||.+++ .++...+++|+.||.+++++|.+. ++++|||+||.++++... .+.|
T Consensus 151 ~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~-~~~~~~~~~Nv~gt~~ll~aa~~~-~~~~~V~iSS~~v~~~~~~~~~~E 228 (478)
T 4dqv_A 151 EPDLGLDQPMWRRLAETVDLIVDSAAMVNA-FPYHELFGPNVAGTAELIRIALTT-KLKPFTYVSTADVGAAIEPSAFTE 228 (478)
T ss_dssp SGGGGCCHHHHHHHHHHCCEEEECCSSCSB-SSCCEEHHHHHHHHHHHHHHHTSS-SCCCEEEEEEGGGGTTSCTTTCCS
T ss_pred CcccCCCHHHHHHHHcCCCEEEECccccCC-cCHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeehhhcCccCCCCcCC
Confidence 999999999999999999999999999887 566678899999999999999986 889999999999887532 2333
Q ss_pred cccCCCCCHHHHHHhhhccCCchhHHHhhh--hhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCC
Q psy16252 245 IIYKAHTHYSELLKISKLDVDDPKYQETRE--RLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPI 320 (545)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~ 320 (545)
+. ...+..+ .....+.+.|+.||+.+|++++++. .+++++|+|||+|||+....
T Consensus 229 ~~---------------------~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~- 286 (478)
T 4dqv_A 229 DA---------------------DIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYA- 286 (478)
T ss_dssp SS---------------------CHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSS-
T ss_pred cc---------------------cccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccC-
Confidence 21 1111111 1223445789999999999999886 59999999999999975421
Q ss_pred CCCccCccchHHHHHH-HhcCceeEE-ecC------CCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCC
Q psy16252 321 PGWIDNLYGPTGLVTG-AQAGVVRTF-LVD------PDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSK 392 (545)
Q Consensus 321 ~g~~~~~~~~~~~~~~-~~~g~~~~~-~~~------~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~ 392 (545)
..|... .....++.. ...|..+.. ++. ++..++++||||||++++.++..... .+...+++||++++.
T Consensus 287 g~~~~~-~~~~~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~---~~~~~~~~ynv~~~~ 362 (478)
T 4dqv_A 287 GQLNMS-DWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAG---SSLAGFATYHVMNPH 362 (478)
T ss_dssp SCCCTT-BHHHHHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC----CCCCSEEEEEESCCC
T ss_pred CcCCHH-HHHHHHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhccc---CCCCCCceEEecCCC
Confidence 011111 111223332 233444322 111 26789999999999999998876321 111247899999983
Q ss_pred CCcccHHHHHHHHHHh
Q psy16252 393 DNPLTWGEFITKSLKE 408 (545)
Q Consensus 393 ~~~~t~~el~~~l~~~ 408 (545)
.++++|.|+++.+.+.
T Consensus 363 ~~~~s~~el~~~l~~~ 378 (478)
T 4dqv_A 363 DDGIGLDEYVDWLIEA 378 (478)
T ss_dssp CSSCSHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHc
Confidence 3339999999999986
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=259.01 Aligned_cols=255 Identities=20% Similarity=0.142 Sum_probs=187.7
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+|||||||||||++|+++|++.|++ .+|+++.|....... +.+.... ......++. |++ +.
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~-~~V~~~~r~~~~~~~-~~~~~~~-------~~~~~~~~~~Dl~------d~ 66 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPD-WEVINIDKLGYGSNP-ANLKDLE-------DDPRYTFVKGDVA------DY 66 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCG-GGGTTTT-------TCTTEEEEECCTT------CH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCC-CEEEEEecCcccCch-hHHhhhc-------cCCceEEEEcCCC------CH
Confidence 3588999999999999999999998632 378999987532211 1111100 011223333 777 67
Q ss_pred HHHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKA 249 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~ 249 (545)
+.+.+++.++|+|||+||..... ..++.++++|+.|+.+++++|.+.+..++|||+||.++++... +++|+....
T Consensus 67 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~ 146 (336)
T 2hun_A 67 ELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLM 146 (336)
T ss_dssp HHHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCCC
T ss_pred HHHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCCC
Confidence 78888889999999999986532 3456788999999999999999873347999999999987642 344443222
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCc
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNL 327 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~ 327 (545)
| .+.|+.||+.+|++++.++ .+++++++||+.|||+...+ ..
T Consensus 147 ~------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~-----~~- 190 (336)
T 2hun_A 147 P------------------------------SSPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFP-----EK- 190 (336)
T ss_dssp C------------------------------CSHHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCT-----TS-
T ss_pred C------------------------------CCccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCc-----Cc-
Confidence 1 2789999999999998876 68999999999999986432 01
Q ss_pred cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHH
Q psy16252 328 YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLK 407 (545)
Q Consensus 328 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~ 407 (545)
....++..+..|....++++++...++++++|+|++++.++..... +++||++++ .++|+.|+++.+.+
T Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~--------g~~~~v~~~--~~~s~~e~~~~i~~ 259 (336)
T 2hun_A 191 -LIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGES--------REIYNISAG--EEKTNLEVVKIILR 259 (336)
T ss_dssp -HHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHCCT--------TCEEEECCS--CEECHHHHHHHHHH
T ss_pred -hHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCCCC--------CCEEEeCCC--CcccHHHHHHHHHH
Confidence 1234455555665555667888889999999999999998865443 789999998 88999999999999
Q ss_pred hhccc
Q psy16252 408 EGVKI 412 (545)
Q Consensus 408 ~~~~~ 412 (545)
.++..
T Consensus 260 ~~g~~ 264 (336)
T 2hun_A 260 LMGKG 264 (336)
T ss_dssp HTTCC
T ss_pred HhCCC
Confidence 98764
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=269.54 Aligned_cols=266 Identities=15% Similarity=0.110 Sum_probs=198.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+.+|+|||||||||||++|++.|+++ |+ +|++++|+....... ....+++++. |+++
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~~~~~~-------------~~~~~v~~~~~Dl~~----- 80 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDW---EVFGMDMQTDRLGDL-------------VKHERMHFFEGDITI----- 80 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSC---EEEEEESCCTTTGGG-------------GGSTTEEEEECCTTT-----
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCC---EEEEEeCChhhhhhh-------------ccCCCeEEEeCccCC-----
Confidence 56789999999999999999999998 65 799999986432110 0112333444 7762
Q ss_pred CHHHHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--ccccccc
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIY 247 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~ 247 (545)
+.+.+.++++++|+|||+||..... ......+++|+.|+.+++++|++. + ++|||+||.++++... ++.|+..
T Consensus 81 d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~-~~~v~~SS~~vyg~~~~~~~~e~~~ 158 (372)
T 3slg_A 81 NKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSEVYGMCADEQFDPDAS 158 (372)
T ss_dssp CHHHHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH-T-CEEEEECCGGGGBSCCCSSBCTTTC
T ss_pred CHHHHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-C-CcEEEeCcHHHhCCCCCCCCCcccc
Confidence 5678888899999999999987643 345678899999999999999997 5 8999999999998743 3444432
Q ss_pred CCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 248 KAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
+.+..+ .....+.|+.||+.+|++++.+. .+++++|+||+.|||+...+..+....
T Consensus 159 ~~~~~p-----------------------~~~p~~~Y~~sK~~~E~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~ 215 (372)
T 3slg_A 159 ALTYGP-----------------------INKPRWIYACSKQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEG 215 (372)
T ss_dssp CEEECC-----------------------TTCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSEECSSCCCTTCSBSC
T ss_pred ccccCC-----------------------CCCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEccccccCCCcccccccccc
Confidence 210000 00112589999999999999886 489999999999999976543222222
Q ss_pred cc-chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec-CCCCcccHHHHHHH
Q psy16252 327 LY-GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN-SKDNPLTWGEFITK 404 (545)
Q Consensus 327 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~-~~~~~~t~~el~~~ 404 (545)
.. ....++..+..|....++++++..+++++|+|+|++++.++..+.. ...+++||+++ + +++|+.|+++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~-----~~~~~~~ni~~~~--~~~s~~e~~~~ 288 (372)
T 3slg_A 216 SSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNG-----VATGKIYNIGNPN--NNFSVRELANK 288 (372)
T ss_dssp SCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHCGGG-----TTTTEEEEECCTT--CEEEHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhcccC-----cCCCceEEeCCCC--CCccHHHHHHH
Confidence 11 1234556666777666778889999999999999999999987641 01478999999 5 68999999999
Q ss_pred HHHhhcccC
Q psy16252 405 SLKEGVKIP 413 (545)
Q Consensus 405 l~~~~~~~~ 413 (545)
+.+.+|..+
T Consensus 289 i~~~~g~~~ 297 (372)
T 3slg_A 289 MLELAAEFP 297 (372)
T ss_dssp HHHHHHHCT
T ss_pred HHHHhCCCc
Confidence 999988743
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=258.38 Aligned_cols=244 Identities=15% Similarity=0.093 Sum_probs=186.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
.+.++|||||||||||++|+++|++.|+ +|+++.|...... + ...++. |++ +
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~----l--------------~~~~~~~Dl~------d 62 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNV---EVFGTSRNNEAKL----P--------------NVEMISLDIM------D 62 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCTTCCC----T--------------TEEEEECCTT------C
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCC---EEEEEecCCcccc----c--------------eeeEEECCCC------C
Confidence 4568999999999999999999999875 7899999765311 1 112222 776 6
Q ss_pred HHHHHHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC----Ccccc
Q psy16252 174 PDDKRLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR----KNIEE 244 (545)
Q Consensus 174 ~~~~~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~----~~i~E 244 (545)
.+.+.+++++ +|+|||+||..... +.++..+++|+.|+.+++++|.+++++++|||+||.++++.. .+++|
T Consensus 63 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E 142 (321)
T 2pk3_A 63 SQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSE 142 (321)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCT
T ss_pred HHHHHHHHHhcCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCC
Confidence 7788888876 99999999986532 246778999999999999999876458999999999998753 24444
Q ss_pred cccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCC
Q psy16252 245 IIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPG 322 (545)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g 322 (545)
+....| .+.|+.||+.+|.+++.++ .+++++++||+.|||+...+.
T Consensus 143 ~~~~~~------------------------------~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~-- 190 (321)
T 2pk3_A 143 ENQLRP------------------------------MSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG-- 190 (321)
T ss_dssp TSCCBC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT--
T ss_pred CCCCCC------------------------------CCccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC--
Confidence 432221 2789999999999998876 589999999999999854321
Q ss_pred CccCccchHHHHHHHhc---C--ceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCccc
Q psy16252 323 WIDNLYGPTGLVTGAQA---G--VVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLT 397 (545)
Q Consensus 323 ~~~~~~~~~~~~~~~~~---g--~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t 397 (545)
.....++..+.. | .....+++++...++++++|+|++++.++..... +++||++++ .+++
T Consensus 191 -----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--------g~~~~i~~~--~~~s 255 (321)
T 2pk3_A 191 -----FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYGKT--------GDVYNVCSG--IGTR 255 (321)
T ss_dssp -----SHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHCCT--------TCEEEESCS--CEEE
T ss_pred -----chHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCCCC--------CCeEEeCCC--CCee
Confidence 011233334333 5 3334567788899999999999999999876543 789999998 8999
Q ss_pred HHHHHHHHHHhhccc
Q psy16252 398 WGEFITKSLKEGVKI 412 (545)
Q Consensus 398 ~~el~~~l~~~~~~~ 412 (545)
+.|+++.+.+.+|..
T Consensus 256 ~~e~~~~i~~~~g~~ 270 (321)
T 2pk3_A 256 IQDVLDLLLAMANVK 270 (321)
T ss_dssp HHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999998763
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=259.67 Aligned_cols=246 Identities=17% Similarity=0.087 Sum_probs=182.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|++.|+++|+ +|+++.|........ .....+++. |+.++ +
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~--------------~~~~~~~~~~Dl~d~------~- 56 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY---EVVVVDNLSSGRREF--------------VNPSAELHVRDLKDY------S- 56 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEECCCSSCCGGG--------------SCTTSEEECCCTTST------T-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC---EEEEEeCCCCCchhh--------------cCCCceEEECccccH------H-
Confidence 5899999999999999999999876 788998876542110 011233333 77743 2
Q ss_pred HHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCCC
Q psy16252 177 KRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAHT 251 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~~ 251 (545)
+.+++++ |+|||+||.... ...+...+++|+.|+.+++++|++. ++++|||+||.++++... +++|+....|
T Consensus 57 ~~~~~~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p- 133 (312)
T 3ko8_A 57 WGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVRTVVFASSSTVYGDADVIPTPEEEPYKP- 133 (312)
T ss_dssp TTTTCCC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCSSSSBCTTSCCCC-
T ss_pred HHhhcCC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeCcHHHhCCCCCCCCCCCCCCCC-
Confidence 4455566 999999996432 2345778899999999999999987 789999999999998653 4555432222
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCccc
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLYG 329 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~ 329 (545)
.+.|+.||+.+|++++.++ .+++++++||+.|||+...+ ..
T Consensus 134 -----------------------------~~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~--------~~ 176 (312)
T 3ko8_A 134 -----------------------------ISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH--------GV 176 (312)
T ss_dssp -----------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCS--------SH
T ss_pred -----------------------------CChHHHHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCC--------Ch
Confidence 2789999999999999876 59999999999999985432 11
Q ss_pred hHHHHHHHhcC-ceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 330 PTGLVTGAQAG-VVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 330 ~~~~~~~~~~g-~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
...++..+..+ .....+++++...+++|++|+|++++.++..... ....+++||++++ +++++.|+++.+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~----~~~~~~~~ni~~~--~~~s~~e~~~~i~~~ 250 (312)
T 3ko8_A 177 IYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEE----MDAPFLALNVGNV--DAVRVLDIAQIVAEV 250 (312)
T ss_dssp HHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHH----SCCSEEEEEESCS--SCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccc----cCCCCcEEEEcCC--CceeHHHHHHHHHHH
Confidence 23445555444 3334667888999999999999999999887211 0114689999998 899999999999999
Q ss_pred hcccC
Q psy16252 409 GVKIP 413 (545)
Q Consensus 409 ~~~~~ 413 (545)
+|..+
T Consensus 251 ~g~~~ 255 (312)
T 3ko8_A 251 LGLRP 255 (312)
T ss_dssp HTCCC
T ss_pred hCCCC
Confidence 88753
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=258.66 Aligned_cols=252 Identities=19% Similarity=0.125 Sum_probs=190.0
Q ss_pred cEEEEeccccccchHHHHHHHhh-CCCc--CEEEEEecCCCCCCHHHHHHhhHHHHHHhhh-hcCCCccc-CCCCCCCCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRS-FPRV--KTIYVIVRAKKNQSPQQRIDKMLDTVAISLK-FTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~-g~~v--~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~-~~~~~~~~-Dl~~~~lgl 172 (545)
|+|||||||||||++|+++|++. ++++ .+|+++.|....... +.+.. +. ..+.+++. |++
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~-~~~~~--------~~~~~~~~~~~~Dl~------ 65 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-ANLAP--------VDADPRLRFVHGDIR------ 65 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-GGGGG--------GTTCTTEEEEECCTT------
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCch-hhhhh--------cccCCCeEEEEcCCC------
Confidence 57999999999999999999995 3221 479999987532211 11111 10 11223344 777
Q ss_pred CHHHHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--ccccccc
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIY 247 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~ 247 (545)
+.+.+.+++.++|+|||+||..... ..++..+++|+.|+.+++++|.+. ++++|||+||.++++... +++|+..
T Consensus 66 d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~~~ 144 (337)
T 1r6d_A 66 DAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQVYGSIDSGSWTESSP 144 (337)
T ss_dssp CHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGCCCSSSCBCTTSC
T ss_pred CHHHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecchHHhCCCCCCCCCCCCC
Confidence 6788999999999999999986533 334678899999999999999997 789999999999987642 3444322
Q ss_pred CCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCcc
Q psy16252 248 KAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
..| .+.|+.||+.+|++++.+. .+++++++||+.|||+...+ .
T Consensus 145 ~~~------------------------------~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~-----~ 189 (337)
T 1r6d_A 145 LEP------------------------------NSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP-----E 189 (337)
T ss_dssp CCC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT-----T
T ss_pred CCC------------------------------CCchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCC-----C
Confidence 211 2789999999999998875 58999999999999986432 0
Q ss_pred CccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHH
Q psy16252 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKS 405 (545)
Q Consensus 326 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l 405 (545)
+ ....++..+..|....++++++...++++++|+|++++.++..... +++||++++ +++|+.|+++.+
T Consensus 190 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~--------g~~~~v~~~--~~~s~~e~~~~i 257 (337)
T 1r6d_A 190 K--LIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRA--------GEIYHIGGG--LELTNRELTGIL 257 (337)
T ss_dssp S--HHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCCT--------TCEEEECCC--CEEEHHHHHHHH
T ss_pred C--hHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhCCCC--------CCEEEeCCC--CCccHHHHHHHH
Confidence 1 1234455555665555668888899999999999999998875443 789999998 889999999999
Q ss_pred HHhhccc
Q psy16252 406 LKEGVKI 412 (545)
Q Consensus 406 ~~~~~~~ 412 (545)
.+.+|..
T Consensus 258 ~~~~g~~ 264 (337)
T 1r6d_A 258 LDSLGAD 264 (337)
T ss_dssp HHHHTCC
T ss_pred HHHhCCC
Confidence 9998763
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=262.28 Aligned_cols=243 Identities=16% Similarity=0.180 Sum_probs=180.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|||||||||||++|+++|++.|+ +|++++|+..... . +.....+++. |+. +.+
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~---~-----------l~~~~~~~~~~Dl~------d~~ 69 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGH---DLVLIHRPSSQIQ---R-----------LAYLEPECRVAEML------DHA 69 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECTTSCGG---G-----------GGGGCCEEEECCTT------CHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEecChHhhh---h-----------hccCCeEEEEecCC------CHH
Confidence 47899999999999999999999875 7899999764321 1 1111333444 777 678
Q ss_pred HHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---cccccccCCCC
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---NIEEIIYKAHT 251 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---~i~E~~~~~~~ 251 (545)
.+.++++++|+|||+||.... ...+...+++|+.++.+++++|.+. ++++|||+||.++++... ..+|+..+.|.
T Consensus 70 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~~~~E~~~~~p~ 148 (342)
T 2x4g_A 70 GLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQA-RVPRILYVGSAYAMPRHPQGLPGHEGLFYDSL 148 (342)
T ss_dssp HHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHH-TCSCEEEECCGGGSCCCTTSSCBCTTCCCSSC
T ss_pred HHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCHHhhCcCCCCCCCCCCCCCCcc
Confidence 899999999999999997653 2456778899999999999999997 789999999999987642 12343222210
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCC-CCCCCCccCccc
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWK-EPIPGWIDNLYG 329 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~-~~~~g~~~~~~~ 329 (545)
....+.|+.||+.+|++++.++ .+++++++||+.|||+.. .+ +
T Consensus 149 --------------------------~~~~~~Y~~sK~~~e~~~~~~~~~g~~~~ilrp~~v~g~~~~~~------~--- 193 (342)
T 2x4g_A 149 --------------------------PSGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGELDIGP------T--- 193 (342)
T ss_dssp --------------------------CTTSCHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEECSCCSSC------S---
T ss_pred --------------------------ccccChHHHHHHHHHHHHHHHhhcCCcEEEEeCCceECCCCccc------c---
Confidence 0013789999999999999875 489999999999999854 21 1
Q ss_pred hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhh
Q psy16252 330 PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEG 409 (545)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~ 409 (545)
...++..+..|....+ ++...++++++|+|++++.++..... +++||++++ + +|+.|+++.+.+.+
T Consensus 194 ~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~~~~~--------g~~~~v~~~--~-~s~~e~~~~i~~~~ 259 (342)
T 2x4g_A 194 TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALERGRI--------GERYLLTGH--N-LEMADLTRRIAELL 259 (342)
T ss_dssp TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHHHSCT--------TCEEEECCE--E-EEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHhCCCC--------CceEEEcCC--c-ccHHHHHHHHHHHh
Confidence 1244555556654433 57789999999999999999876543 789999998 7 99999999999998
Q ss_pred ccc
Q psy16252 410 VKI 412 (545)
Q Consensus 410 ~~~ 412 (545)
|..
T Consensus 260 g~~ 262 (342)
T 2x4g_A 260 GQP 262 (342)
T ss_dssp TCC
T ss_pred CCC
Confidence 764
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-30 Score=261.16 Aligned_cols=251 Identities=18% Similarity=0.115 Sum_probs=191.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+|+|||||||||||++|+++|++.|+ +|++++|........ .....+++. |+. +.
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~--------------~~~~v~~~~~Dl~------d~ 84 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGH---YVIASDWKKNEHMTE--------------DMFCDEFHLVDLR------VM 84 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCSSSCG--------------GGTCSEEEECCTT------SH
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCC---eEEEEECCCccchhh--------------ccCCceEEECCCC------CH
Confidence 468999999999999999999999875 789999986542210 011233344 777 67
Q ss_pred HHHHHHhcCccEEEEccccccc----hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-------ccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF----DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-------NIE 243 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-------~i~ 243 (545)
+.+..+++++|+|||+||.... ...+...+++|+.|+.+++++|++. ++++|||+||.++++... .++
T Consensus 85 ~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~~V~~SS~~v~~~~~~~~~~~~~~~ 163 (379)
T 2c5a_A 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQLETTNVSLK 163 (379)
T ss_dssp HHHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEGGGSCGGGSSSSSSCEEC
T ss_pred HHHHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeehheeCCCCCCCccCCCcC
Confidence 8899999999999999997653 3456788899999999999999987 789999999999887532 123
Q ss_pred ccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCC
Q psy16252 244 EIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIP 321 (545)
Q Consensus 244 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~ 321 (545)
|+... .....+.|+.||+.+|++++.+. .+++++++||+.|||+...+..
T Consensus 164 E~~~~----------------------------~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~ 215 (379)
T 2c5a_A 164 ESDAW----------------------------PAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKG 215 (379)
T ss_dssp GGGGS----------------------------SBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSS
T ss_pred cccCC----------------------------CCCCCChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCccc
Confidence 32100 01122789999999999998875 6899999999999998654322
Q ss_pred CCccCccchHHHHHHHhcCce-eEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHH
Q psy16252 322 GWIDNLYGPTGLVTGAQAGVV-RTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGE 400 (545)
Q Consensus 322 g~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~e 400 (545)
++. .....++..+..+.. ..++++++...++++++|+|++++.++..+ . +++||++++ +++|+.|
T Consensus 216 ~~~---~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~-~--------~~~~ni~~~--~~~s~~e 281 (379)
T 2c5a_A 216 GRE---KAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD-F--------REPVNIGSD--EMVSMNE 281 (379)
T ss_dssp SCC---CHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS-C--------CSCEEECCC--CCEEHHH
T ss_pred ccc---cHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhcc-C--------CCeEEeCCC--CccCHHH
Confidence 211 112345555555543 345678888999999999999999998754 3 579999998 8999999
Q ss_pred HHHHHHHhhccc
Q psy16252 401 FITKSLKEGVKI 412 (545)
Q Consensus 401 l~~~l~~~~~~~ 412 (545)
+++.+.+.++..
T Consensus 282 ~~~~i~~~~g~~ 293 (379)
T 2c5a_A 282 MAEMVLSFEEKK 293 (379)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHHHHhCCC
Confidence 999999998763
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=258.76 Aligned_cols=247 Identities=13% Similarity=0.048 Sum_probs=184.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
+|+|||||||||||++|+++|++.|+ .|+++.|.... |+. +.+.
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~---~v~~~~r~~~~---------------------------D~~------d~~~ 46 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGD---VELVLRTRDEL---------------------------NLL------DSRA 46 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT---EEEECCCTTTC---------------------------CTT------CHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC---eEEEEecCccC---------------------------Ccc------CHHH
Confidence 58999999999999999999999875 57777775321 776 6678
Q ss_pred HHHHhc--CccEEEEccccccc----hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 177 KRLVTS--KVNLVFHCAATLRF----DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
+.++++ ++|+|||+||.... ..++...+++|+.++.+++++|.+. ++++|||+||.++++... +++|+...
T Consensus 47 ~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~~~~ 125 (321)
T 1e6u_A 47 VHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSCIYPKLAKQPMAESELL 125 (321)
T ss_dssp HHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGSCTTCCSSBCGGGTT
T ss_pred HHHHHHhcCCCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccHHHcCCCCCCCcCccccc
Confidence 888888 89999999998652 3455778899999999999999997 789999999999987632 34444211
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCC--chHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCc
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENM--NTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
.. ...| +.|+.||+.+|++++.++ .+++++++||+.|||+...+....
T Consensus 126 ~~---------------------------~~~p~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~- 177 (321)
T 1e6u_A 126 QG---------------------------TLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSN- 177 (321)
T ss_dssp SS---------------------------CCCGGGHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTC-
T ss_pred cC---------------------------CCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCC-
Confidence 00 0111 489999999999998875 589999999999999865432110
Q ss_pred cCccchHHHHHHHhc----C-ceeEEecCCCCcccceehHHHHHHHHhccccccccc-CCCCCCCCEEEeecCCCCcccH
Q psy16252 325 DNLYGPTGLVTGAQA----G-VVRTFLVDPDVKADIVPADLVVNALICAPWNGHERF-HKDPSCLPIYNYVNSKDNPLTW 398 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~-~~~~~~~~vy~i~~~~~~~~t~ 398 (545)
.+ ....++..+.. | ....++++++..+++|||+|+|++++.++.+..... ......+++||++++ +++|+
T Consensus 178 ~~--~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~--~~~s~ 253 (321)
T 1e6u_A 178 SH--VIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTG--VDCTI 253 (321)
T ss_dssp SS--HHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCS--CCEEH
T ss_pred Cc--cHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCC--CCccH
Confidence 01 11234443332 3 333456788899999999999999999987654300 000012589999988 88999
Q ss_pred HHHHHHHHHhhccc
Q psy16252 399 GEFITKSLKEGVKI 412 (545)
Q Consensus 399 ~el~~~l~~~~~~~ 412 (545)
.|+++.+.+.++..
T Consensus 254 ~e~~~~i~~~~g~~ 267 (321)
T 1e6u_A 254 RELAQTIAKVVGYK 267 (321)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998763
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=263.99 Aligned_cols=260 Identities=17% Similarity=0.164 Sum_probs=186.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhC-CCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSF-PRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g-~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+++|+|||||||||||++|+++|++.| + +|++++|...... +.+. .....+++. |+.
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~~--~~l~----------~~~~v~~~~~Dl~------ 88 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVN---QVHVVDNLLSAEK--INVP----------DHPAVRFSETSIT------ 88 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCS---EEEEECCCTTCCG--GGSC----------CCTTEEEECSCTT------
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCc---eEEEEECCCCCch--hhcc----------CCCceEEEECCCC------
Confidence 567999999999999999999999986 4 7999999754321 1000 011223333 776
Q ss_pred CHHHHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--ccc--cc
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIE--EI 245 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~--E~ 245 (545)
+.+.+.++++++|+|||+||..... .++...+++|+.++.+++++|++.+++++|||+||.++++... ++. |+
T Consensus 89 d~~~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~ 168 (377)
T 2q1s_A 89 DDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEE 168 (377)
T ss_dssp CHHHHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CC
T ss_pred CHHHHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccc
Confidence 6778999999999999999987543 3457788999999999999998753688999999999987643 233 33
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCC-
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPG- 322 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g- 322 (545)
....|. ....+.|+.||+.+|++++.++ .+++++++||+.|||+...+.+|
T Consensus 169 ~~~~~~--------------------------~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~ 222 (377)
T 2q1s_A 169 TDIVSL--------------------------HNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGR 222 (377)
T ss_dssp CCCCCS--------------------------SCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSS
T ss_pred cccccc--------------------------cCCCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccc
Confidence 210000 0112789999999999998875 58999999999999986522111
Q ss_pred CccCc-----cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHH-HHhcccccccccCCCCCCCCEEEeecCCCCcc
Q psy16252 323 WIDNL-----YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNA-LICAPWNGHERFHKDPSCLPIYNYVNSKDNPL 396 (545)
Q Consensus 323 ~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~a-i~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~ 396 (545)
|.... .....++..+..|....++++++...++++|+|+|++ ++.++..+.. + +||++++ +++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~~--------g-~~~i~~~--~~~ 291 (377)
T 2q1s_A 223 WRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTPG--------G-VYNIASG--KET 291 (377)
T ss_dssp CCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHHHHHHHHHHHHHCCTT--------E-EEECCCC--CCE
T ss_pred cccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHHhcCCC--------C-eEEecCC--Cce
Confidence 22111 1123455556666654456778899999999999999 9888876433 5 9999998 899
Q ss_pred cHHHHHHHHHHhhccc
Q psy16252 397 TWGEFITKSLKEGVKI 412 (545)
Q Consensus 397 t~~el~~~l~~~~~~~ 412 (545)
|+.|+++.+.+.+|..
T Consensus 292 s~~e~~~~i~~~~g~~ 307 (377)
T 2q1s_A 292 SIADLATKINEITGNN 307 (377)
T ss_dssp EHHHHHHHHHHHHTCC
T ss_pred eHHHHHHHHHHHhCCC
Confidence 9999999999998764
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=257.64 Aligned_cols=250 Identities=16% Similarity=0.117 Sum_probs=188.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.+++ .+|+++.|....... +.+. .+.....+++. |++ +.+.
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~-~~~~--------~~~~~~~~~~~~Dl~------d~~~ 68 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNK-ANLE--------AILGDRVELVVGDIA------DAEL 68 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCG-GGTG--------GGCSSSEEEEECCTT------CHHH
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCCh-hHHh--------hhccCCeEEEECCCC------CHHH
Confidence 78999999999999999999998321 379999997532211 1111 11112233444 877 6788
Q ss_pred HHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-------------
Q psy16252 177 KRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK------------- 240 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~------------- 240 (545)
+.++++++|+|||+||..... ..++..+++|+.|+.+++++|.+. ++ +|||+||.++++...
T Consensus 69 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~ 146 (348)
T 1oc2_A 69 VDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-DI-RFHHVSTDEVYGDLPLREDLPGHGEGPG 146 (348)
T ss_dssp HHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGGCCBCCGGGSTTTTCSTT
T ss_pred HHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHh-CC-eEEEecccceeCCCcccccccccccccC
Confidence 999999999999999987533 334678899999999999999997 66 999999999887531
Q ss_pred -cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCC
Q psy16252 241 -NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 241 -~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~ 317 (545)
+++|+... ...+.|+.||+.+|++++.++ .+++++++||+.|||+..
T Consensus 147 ~~~~E~~~~------------------------------~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~ 196 (348)
T 1oc2_A 147 EKFTAETNY------------------------------NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ 196 (348)
T ss_dssp SSBCTTSCC------------------------------CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred CCcCCCCCC------------------------------CCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCC
Confidence 22222111 122789999999999998875 589999999999999864
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCccc
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLT 397 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t 397 (545)
.+. + ....++..+..|....++++++...++++++|+|++++.++..... +++||++++ .+++
T Consensus 197 ~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~--------g~~~~i~~~--~~~s 259 (348)
T 1oc2_A 197 HIE-----K--FIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRM--------GETYLIGAD--GEKN 259 (348)
T ss_dssp CTT-----S--HHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCCT--------TCEEEECCS--CEEE
T ss_pred Ccc-----c--hHHHHHHHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCCCC--------CCeEEeCCC--CCCC
Confidence 321 1 1234455555666555678888899999999999999998865433 789999998 8999
Q ss_pred HHHHHHHHHHhhccc
Q psy16252 398 WGEFITKSLKEGVKI 412 (545)
Q Consensus 398 ~~el~~~l~~~~~~~ 412 (545)
+.|+++.+.+.++..
T Consensus 260 ~~e~~~~i~~~~g~~ 274 (348)
T 1oc2_A 260 NKEVLELILEKMGQP 274 (348)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999998764
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=268.55 Aligned_cols=260 Identities=18% Similarity=0.164 Sum_probs=184.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHH----HhhhhcCCCccc-CCCC-C
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVA----ISLKFTCSTSKE-SAQA-P 168 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~----~~~~~~~~~~~~-Dl~~-~ 168 (545)
..+|+|||||||||||++|+++|++.|+ +|++++|+.....+.+++...+...+ ......++.++. |+++ +
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 143 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYSH---RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD 143 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTEE---EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCCC---EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence 3468999999999999999999977653 89999998764445555555443311 111223455555 9886 3
Q ss_pred CCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC-------Cc
Q psy16252 169 DLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR-------KN 241 (545)
Q Consensus 169 ~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~-------~~ 241 (545)
.++ ...++|+|||+||......++...+++|+.|+.+++++|.+ ++++|||+||.++ +.. .+
T Consensus 144 ~l~--------~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~SS~~~-G~~~~~~~~~~~ 212 (427)
T 4f6c_A 144 DVV--------LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDTEDVT 212 (427)
T ss_dssp CCC--------CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH--TTCEEEEEEEGGG-GSEECSSCSCCE
T ss_pred cCC--------CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEECchHh-CCCccCCCCCcc
Confidence 332 66799999999999887778888999999999999999998 5789999999998 432 12
Q ss_pred ccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCCCCC
Q psy16252 242 IEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWKEPI 320 (545)
Q Consensus 242 i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~~~~ 320 (545)
+.|+....+ ....+.|+.||+.+|.+++++. .+++++|+|||.|||+...+.
T Consensus 213 ~~E~~~~~~---------------------------~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~ivRpg~v~G~~~~~~ 265 (427)
T 4f6c_A 213 FSEADVYKG---------------------------QLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRW 265 (427)
T ss_dssp ECTTCSCSS---------------------------CCCCSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCEESCSSSCC
T ss_pred ccccccccC---------------------------CCCCCchHHHHHHHHHHHHHHHHcCCCEEEEeCCeeecCCCCCc
Confidence 333322111 1233899999999999999977 799999999999999876532
Q ss_pred CCCccCc--cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccH
Q psy16252 321 PGWIDNL--YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTW 398 (545)
Q Consensus 321 ~g~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~ 398 (545)
+..+. .....++.....+.... .+.++...++++|+|+|++++.++..+.. +++||++++ ++++|
T Consensus 266 --~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~DvA~ai~~~~~~~~~--------g~~~~l~~~--~~~s~ 332 (427)
T 4f6c_A 266 --HMRNIKTNRFSMVMNDLLQLDCIG-VSMAEMPVDFSFVDTTARQIVALAQVNTP--------QIIYHVLSP--NKMPV 332 (427)
T ss_dssp --CCTTGGGCHHHHHHHHHHHSSEEE-HHHHTCEECCEEHHHHHHHHHHHTTSCCC--------CSEEEESCS--CCEEH
T ss_pred --cccCcchHHHHHHHHHHHhcCCCC-CccccceEEEeeHHHHHHHHHHHHcCCCC--------CCEEEecCC--CCCcH
Confidence 11111 11234455544433221 13458899999999999999999876544 799999998 89999
Q ss_pred HHHHHHHHHh
Q psy16252 399 GEFITKSLKE 408 (545)
Q Consensus 399 ~el~~~l~~~ 408 (545)
.|+++.+.+.
T Consensus 333 ~el~~~i~~~ 342 (427)
T 4f6c_A 333 KSLLECVKRK 342 (427)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHHc
Confidence 9999999984
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-30 Score=255.98 Aligned_cols=253 Identities=14% Similarity=-0.007 Sum_probs=188.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+++|||||||||||++|+++|++.|+ +|++++|....... .++.... .....+++. |++ +.
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~-~~~~~~~-------~~~~~~~~~~Dl~------d~ 75 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGY---RVHGLVARRSSDTR-WRLRELG-------IEGDIQYEDGDMA------DA 75 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSSCCC-HHHHHTT-------CGGGEEEEECCTT------CH
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCCccccc-cchhhcc-------ccCceEEEECCCC------CH
Confidence 369999999999999999999999875 79999997654221 1221100 011223333 777 67
Q ss_pred HHHHHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCC-ceEEEEeccccccCCC--cccccc
Q psy16252 175 DDKRLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNL-KMFTYVSTAFSNSYRK--NIEEII 246 (545)
Q Consensus 175 ~~~~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~-~~~v~vSS~~v~~~~~--~i~E~~ 246 (545)
+.+.+++++ +|+|||+||..... ..+...+++|+.|+.+++++|.+. ++ ++|||+||.++++... +++|+.
T Consensus 76 ~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS~~v~g~~~~~~~~E~~ 154 (335)
T 1rpn_A 76 CSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQASTSEMFGLIQAERQDENT 154 (335)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEEGGGGCSCSSSSBCTTS
T ss_pred HHHHHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeCHHHhCCCCCCCCCccc
Confidence 788888875 69999999976542 346778899999999999999987 65 8999999999987643 345543
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCc
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
.+.| .+.|+.||+.+|.+++.+. .+++++++||+.+||+...+ ++.
T Consensus 155 ~~~p------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~--~~~ 202 (335)
T 1rpn_A 155 PFYP------------------------------RSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGI--EFV 202 (335)
T ss_dssp CCCC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCT--TSH
T ss_pred CCCC------------------------------CChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCC--Ccc
Confidence 2222 2689999999999999876 58999999999999985431 111
Q ss_pred cCccchHHHHHHHhcCce-eEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHH
Q psy16252 325 DNLYGPTGLVTGAQAGVV-RTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFIT 403 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~ 403 (545)
. .....++..+..|.. ...+++++...++++|+|+|++++.++..+. +++||++++ +++|+.|+++
T Consensus 203 ~--~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~---------~~~~ni~~~--~~~s~~e~~~ 269 (335)
T 1rpn_A 203 T--RKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK---------ADDYVVATG--VTTTVRDMCQ 269 (335)
T ss_dssp H--HHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS---------CCCEEECCS--CEEEHHHHHH
T ss_pred h--HHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHhcCC---------CCEEEEeCC--CCccHHHHHH
Confidence 0 012234444555653 3346788899999999999999999987543 379999998 8899999999
Q ss_pred HHHHhhcc
Q psy16252 404 KSLKEGVK 411 (545)
Q Consensus 404 ~l~~~~~~ 411 (545)
.+.+.+|.
T Consensus 270 ~i~~~~g~ 277 (335)
T 1rpn_A 270 IAFEHVGL 277 (335)
T ss_dssp HHHHTTTC
T ss_pred HHHHHhCC
Confidence 99999876
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=251.17 Aligned_cols=254 Identities=19% Similarity=0.154 Sum_probs=187.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.|+ +|+++.|...... +. +. ...+++. |+. +.+.
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~--~~-----------~~-~~~~~~~~D~~------~~~~ 58 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGL---SVVVVDNLQTGHE--DA-----------IT-EGAKFYNGDLR------DKAF 58 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCG--GG-----------SC-TTSEEEECCTT------CHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCCCcCch--hh-----------cC-CCcEEEECCCC------CHHH
Confidence 6899999999999999999999875 7888988754321 10 10 1223333 776 6778
Q ss_pred HHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCC
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKA 249 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~ 249 (545)
+.++++ ++|+|||+||..... ..++..+++|+.++.+++++|++. ++++|||+||.++++... +++|+..+.
T Consensus 59 ~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~ 137 (330)
T 2c20_A 59 LRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEF-KVDKFIFSSTAATYGEVDVDLITEETMTN 137 (330)
T ss_dssp HHHHHHHSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGGCSCSSSSBCTTSCCC
T ss_pred HHHHHhhcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHc-CCCEEEEeCCceeeCCCCCCCCCcCCCCC
Confidence 888888 899999999986543 345778899999999999999987 789999999999987642 445543222
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC-
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN- 326 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~- 326 (545)
| .+.|+.||+.+|++++.+. .+++++++||+.|||+...+..|....
T Consensus 138 ~------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~ 187 (330)
T 2c20_A 138 P------------------------------TNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRP 187 (330)
T ss_dssp C------------------------------SSHHHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSS
T ss_pred C------------------------------CChHHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCcccccccc
Confidence 2 2789999999999998876 589999999999999864433222111
Q ss_pred ccchHHHHHHHhcC--ceeEEec------CCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccH
Q psy16252 327 LYGPTGLVTGAQAG--VVRTFLV------DPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTW 398 (545)
Q Consensus 327 ~~~~~~~~~~~~~g--~~~~~~~------~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~ 398 (545)
.......+.....+ ....+++ +++...++|||+|+|++++.++..+.. ...+++||++++ +++|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~~~~~~~-----~~~~~~~ni~~~--~~~s~ 260 (330)
T 2c20_A 188 ETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQN-----GGESDFYNLGNG--NGFSV 260 (330)
T ss_dssp CCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHHHHHHHHHHHHHHT-----TCCCEEEECCCT--TCBCH
T ss_pred ccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHHHHHHHHHHhcccc-----CCCCCeEEeCCC--CCccH
Confidence 11122333332222 2223444 567889999999999999998876532 012579999998 89999
Q ss_pred HHHHHHHHHhhccc
Q psy16252 399 GEFITKSLKEGVKI 412 (545)
Q Consensus 399 ~el~~~l~~~~~~~ 412 (545)
.|+++.+.+.+|..
T Consensus 261 ~e~~~~i~~~~g~~ 274 (330)
T 2c20_A 261 KEIVDAVREVTNHE 274 (330)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999988763
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=255.61 Aligned_cols=269 Identities=18% Similarity=0.104 Sum_probs=186.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|+|||||||||||++|+++|++.|+ +|+++.|..... ....+.. +.. .+.+++. |++ +.+
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~-~~~~~~~--------l~~~~~~~~~~~Dl~------d~~ 63 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGI---DLIVFDNLSRKG-ATDNLHW--------LSSLGNFEFVHGDIR------NKN 63 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSTT-HHHHHHH--------HHTTCCCEEEECCTT------CHH
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCC---EEEEEeCCCccC-chhhhhh--------hccCCceEEEEcCCC------CHH
Confidence 6899999999999999999999875 788998854221 1111111 111 1233444 887 678
Q ss_pred HHHHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCc-eEEEEeccccccCCC--cccccc-
Q psy16252 176 DKRLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLK-MFTYVSTAFSNSYRK--NIEEII- 246 (545)
Q Consensus 176 ~~~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~-~~v~vSS~~v~~~~~--~i~E~~- 246 (545)
.+.+++++ +|+|||+||..... ..++..+++|+.|+.+++++|.+. +++ +|||+||.++++... +..|..
T Consensus 64 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~iv~~SS~~v~g~~~~~~~~e~~~ 142 (347)
T 1orr_A 64 DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLEQYKYNETET 142 (347)
T ss_dssp HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCTTSCEEECSS
T ss_pred HHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEeccHHHhCCCCcCCcccccc
Confidence 88888887 99999999986542 345778899999999999999987 565 999999999987643 111110
Q ss_pred -cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCC
Q psy16252 247 -YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
+..+... .. .++ . ......+.|+.||+.+|++++.++ .+++++++||+.|||+...+..
T Consensus 143 ~~~~~~~~-------~~-~~e-----~---~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~-- 204 (347)
T 1orr_A 143 RYTCVDKP-------NG-YDE-----S---TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATY-- 204 (347)
T ss_dssp CEEETTCT-------TC-BCT-----T---SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBT--
T ss_pred cccccccc-------cC-ccc-----c---CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCC--
Confidence 0000000 00 000 0 001123789999999999999876 5899999999999998653311
Q ss_pred ccCccchHHHHHHHhcCc-----eeEEecCCCCcccceehHHHHHHHHhccccc-ccccCCCCCCCCEEEeecCCCCccc
Q psy16252 324 IDNLYGPTGLVTGAQAGV-----VRTFLVDPDVKADIVPADLVVNALICAPWNG-HERFHKDPSCLPIYNYVNSKDNPLT 397 (545)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~v~vddva~ai~~~~~~~-~~~~~~~~~~~~vy~i~~~~~~~~t 397 (545)
+. .....++..+..+. ....+++++..+++++++|+|++++.++... .. .+++||++++..+++|
T Consensus 205 -~~-~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~-------~g~~~~v~~~~~~~~s 275 (347)
T 1orr_A 205 -DQ-GWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKI-------RGNAFNIGGTIVNSLS 275 (347)
T ss_dssp -TB-CHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHH-------TTCEEEESSCGGGEEE
T ss_pred -cC-cHHHHHHHHHHhCcccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhccccC-------CCCEEEeCCCCCCCcc
Confidence 00 01123344443443 3345678899999999999999999988752 22 3689999987222599
Q ss_pred HHHHHHHHHHhhccc
Q psy16252 398 WGEFITKSLKEGVKI 412 (545)
Q Consensus 398 ~~el~~~l~~~~~~~ 412 (545)
+.|+++.+.+.+|..
T Consensus 276 ~~e~~~~i~~~~g~~ 290 (347)
T 1orr_A 276 LLELFKLLEDYCNID 290 (347)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999998764
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=258.90 Aligned_cols=267 Identities=14% Similarity=0.070 Sum_probs=187.6
Q ss_pred CcEEEEeccccccchHHHHHHH-hhCCCcCEEEEEecCCCCCC------HHHHHHhhHHHHHHhhhh----cC---CCcc
Q psy16252 97 GAEILMTGATGFLGKLLIEKLL-RSFPRVKTIYVIVRAKKNQS------PQQRIDKMLDTVAISLKF----TC---STSK 162 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll-~~g~~v~~V~~l~R~~~~~~------~~~rl~~~~~~~~~~~~~----~~---~~~~ 162 (545)
+|+|||||||||||++|+++|+ +.|+ +|+++.|...... ..+.+...+. .+.. .. ..++
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 74 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNH---SVVIVDSLVGTHGKSDHVETRENVARKLQ----QSDGPKPPWADRYAALE 74 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCC---EEEEEECCTTTTTCCTTSCCHHHHHHHHH----HSCSSCCTTTTCCCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCC---EEEEEecCCcccccccccchHHHHHHHHH----HhhccccccCCceEEEE
Confidence 5799999999999999999999 8765 7889988754320 0122222111 1111 12 3344
Q ss_pred c-CCCCCCCCCCHHHHHHHhc--C-ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccc
Q psy16252 163 E-SAQAPDLGLSPDDKRLVTS--K-VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFS 235 (545)
Q Consensus 163 ~-Dl~~~~lgl~~~~~~~l~~--~-vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v 235 (545)
. |++ +.+.+..+++ + +|+|||+||..... ..++..+++|+.|+.+++++|++. ++++|||+||.++
T Consensus 75 ~~Dl~------d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~iv~~SS~~v 147 (397)
T 1gy8_A 75 VGDVR------NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFSSSAAI 147 (397)
T ss_dssp ESCTT------CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGG
T ss_pred ECCCC------CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh-CCCEEEEECCHHH
Confidence 4 887 6677888877 6 99999999987542 345778999999999999999987 7899999999998
Q ss_pred ccCCC---------cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCE
Q psy16252 236 NSYRK---------NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPV 304 (545)
Q Consensus 236 ~~~~~---------~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~ 304 (545)
++... +++|+..+ ...+.|+.||+.+|++++.++ .++++
T Consensus 148 ~g~~~~~~~~~~~~~~~E~~~~------------------------------~p~~~Y~~sK~~~e~~~~~~~~~~gi~~ 197 (397)
T 1gy8_A 148 FGNPTMGSVSTNAEPIDINAKK------------------------------SPESPYGESKLIAERMIRDCAEAYGIKG 197 (397)
T ss_dssp TBSCCC-----CCCCBCTTSCC------------------------------BCSSHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hCCCCcccccccccCcCccCCC------------------------------CCCCchHHHHHHHHHHHHHHHHHHCCcE
Confidence 87532 23332211 112789999999999999876 58999
Q ss_pred EEEccceeeccCCCCCCCCccC-ccchHHHHH-----HHhcCce------------eEEec------CCCCcccceehHH
Q psy16252 305 CIFRPSIVISTWKEPIPGWIDN-LYGPTGLVT-----GAQAGVV------------RTFLV------DPDVKADIVPADL 360 (545)
Q Consensus 305 ~i~Rp~~i~g~~~~~~~g~~~~-~~~~~~~~~-----~~~~g~~------------~~~~~------~~~~~~~~v~vdd 360 (545)
+++||+.|||+...+..|.... .......+. .+..|.. ..+++ +++..+++|||+|
T Consensus 198 ~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~D 277 (397)
T 1gy8_A 198 ICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCD 277 (397)
T ss_dssp EEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHH
T ss_pred EEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHH
Confidence 9999999999975433232211 112222332 4444432 23444 5678899999999
Q ss_pred HHHHHHhcccccccccCCCCCCC---CEEEeecCCCCcccHHHHHHHHHHhhcc
Q psy16252 361 VVNALICAPWNGHERFHKDPSCL---PIYNYVNSKDNPLTWGEFITKSLKEGVK 411 (545)
Q Consensus 361 va~ai~~~~~~~~~~~~~~~~~~---~vy~i~~~~~~~~t~~el~~~l~~~~~~ 411 (545)
||++++.++...... .....+ ++||++++ +++|+.|+++.+.+.++.
T Consensus 278 va~a~~~~l~~~~~~--~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~ 327 (397)
T 1gy8_A 278 LASAHILALDYVEKL--GPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTGH 327 (397)
T ss_dssp HHHHHHHHHHHHHTC--CTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccccc--ccccccCCCcEEEeCCC--CcccHHHHHHHHHHHhCC
Confidence 999999988764320 000013 79999988 889999999999999876
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=255.48 Aligned_cols=242 Identities=19% Similarity=0.174 Sum_probs=182.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.| .++++.|....... .+ .....++. |+. + ++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g----~~v~~~~~~~~~~~--~~------------~~~~~~~~~Dl~------~-~~ 56 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN----EIVVIDNLSSGNEE--FV------------NEAARLVKADLA------A-DD 56 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS----CEEEECCCSSCCGG--GS------------CTTEEEECCCTT------T-SC
T ss_pred CEEEEECCCchHHHHHHHHHHhCC----CEEEEEcCCCCChh--hc------------CCCcEEEECcCC------h-HH
Confidence 689999999999999999999986 24455544322110 00 11222333 776 3 45
Q ss_pred HHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCCC
Q psy16252 177 KRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAHT 251 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~~ 251 (545)
+.++++++|+|||+|+.... .+.++..+++|+.|+.+++++|++. ++++|||+||.++++... +++|+....|
T Consensus 57 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~- 134 (313)
T 3ehe_A 57 IKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKA-GVSRIVFTSTSTVYGEAKVIPTPEDYPTHP- 134 (313)
T ss_dssp CHHHHTTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGGCSCSSSSBCTTSCCCC-
T ss_pred HHHHhcCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCchHHhCcCCCCCCCCCCCCCC-
Confidence 67788899999999996432 3456788999999999999999987 789999999999998643 3444432222
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCccc
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLYG 329 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~ 329 (545)
.+.|+.||+.+|.+++.++ .+++++++||+.|||+...+ ..
T Consensus 135 -----------------------------~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~--------~~ 177 (313)
T 3ehe_A 135 -----------------------------ISLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTH--------GV 177 (313)
T ss_dssp -----------------------------CSHHHHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCC--------SH
T ss_pred -----------------------------CCHHHHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCc--------Ch
Confidence 2789999999999999876 69999999999999985442 11
Q ss_pred hHHHHHHHhcC-ceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 330 PTGLVTGAQAG-VVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 330 ~~~~~~~~~~g-~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
...++..+..+ ....++++++...+++||+|+|++++.++.... .+++||++++ +++|+.|+++.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~--------~~~~~ni~~~--~~~s~~e~~~~i~~~ 247 (313)
T 3ehe_A 178 IYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDE--------RVNIFNIGSE--DQIKVKRIAEIVCEE 247 (313)
T ss_dssp HHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCCS--------SEEEEECCCS--CCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccCC--------CCceEEECCC--CCeeHHHHHHHHHHH
Confidence 23445555555 334467888899999999999999999987433 3689999998 899999999999999
Q ss_pred hcccC
Q psy16252 409 GVKIP 413 (545)
Q Consensus 409 ~~~~~ 413 (545)
+|..+
T Consensus 248 ~g~~~ 252 (313)
T 3ehe_A 248 LGLSP 252 (313)
T ss_dssp TTCCC
T ss_pred hCCCC
Confidence 88743
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=253.59 Aligned_cols=241 Identities=20% Similarity=0.166 Sum_probs=178.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCC-HHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS-PQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~-~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
.+|+|||||||||||++|+++|++.|+ +|++++|...... ....+... ...+.+-.-.
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 64 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGE---EVTVLDDLRVPPMIPPEGTGKF------------------LEKPVLELEE 64 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC---CEEEECCCSSCCSSCCTTSSEE------------------ECSCGGGCCH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCC---EEEEEecCCcccccchhhhhhh------------------ccCCCeeEEe
Confidence 468999999999999999999999976 6889999765210 00000000 0000000011
Q ss_pred HHHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKA 249 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~ 249 (545)
.+ +.++|+|||+||..... ......++ |+.++.+++++|++. ++++|||+||.++++... +++|+....
T Consensus 65 ~D----l~~~d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~-~v~~~v~~SS~~v~~~~~~~~~~E~~~~~ 138 (321)
T 3vps_A 65 RD----LSDVRLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSV-GVPKVVVGSTCEVYGQADTLPTPEDSPLS 138 (321)
T ss_dssp HH----HTTEEEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCSSSSBCTTSCCC
T ss_pred Cc----cccCCEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHc-CCCeEEEecCHHHhCCCCCCCCCCCCCCC
Confidence 11 12899999999987532 22234556 999999999999997 799999999999998743 455543322
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCC-CEEEEccceeeccCCCCCCCCccC
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFF-PVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l-~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
| .+.|+.||+.+|++++.+. .++ +++|+||+.|||+...+ .
T Consensus 139 p------------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~-----~- 182 (321)
T 3vps_A 139 P------------------------------RSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERP-----D- 182 (321)
T ss_dssp C------------------------------CSHHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCT-----T-
T ss_pred C------------------------------CChhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCC-----C-
Confidence 2 2789999999999999886 688 99999999999986543 1
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
.....++..+..|....++++++...++++++|+|++++.++..... + +||++++ +++|+.|+++.+.
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~--------g-~~~i~~~--~~~s~~e~~~~i~ 250 (321)
T 3vps_A 183 -ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLP--------S-VVNFGSG--QSLSVNDVIRILQ 250 (321)
T ss_dssp -SHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCC--------S-EEEESCS--CCEEHHHHHHHHH
T ss_pred -ChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCC--------C-eEEecCC--CcccHHHHHHHHH
Confidence 11234555566666666778889999999999999999999987654 5 9999998 8999999999999
Q ss_pred Hhhccc
Q psy16252 407 KEGVKI 412 (545)
Q Consensus 407 ~~~~~~ 412 (545)
.+|..
T Consensus 251 -~~g~~ 255 (321)
T 3vps_A 251 -ATSPA 255 (321)
T ss_dssp -TTCTT
T ss_pred -HhCCC
Confidence 87764
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=252.61 Aligned_cols=249 Identities=19% Similarity=0.102 Sum_probs=184.5
Q ss_pred CcEEEEeccccccchHHHHHHHhh--CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRS--FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~--g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+|+|||||||||||++|+++|++. |+ +|+++.|+..... +. ...+++. |+. +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~~~~~----~~------------~~~~~~~~D~~------d 56 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTE---NVIASDIRKLNTD----VV------------NSGPFEVVNAL------D 56 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGG---GEEEEESCCCSCH----HH------------HSSCEEECCTT------C
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCC---EEEEEcCCCcccc----cc------------CCCceEEecCC------C
Confidence 478999999999999999999998 55 6888999755421 10 1233444 777 6
Q ss_pred HHHHHHHhc--CccEEEEccccccc--hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---cccccc
Q psy16252 174 PDDKRLVTS--KVNLVFHCAATLRF--DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---NIEEII 246 (545)
Q Consensus 174 ~~~~~~l~~--~vd~Vih~Aa~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---~i~E~~ 246 (545)
.+.+.++++ ++|+|||+||.... ...+...+++|+.++.+++++|++. ++++|||+||.++++... .++|..
T Consensus 57 ~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~e~~ 135 (312)
T 2yy7_A 57 FNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAK-KIKKIFWPSSIAVFGPTTPKENTPQYT 135 (312)
T ss_dssp HHHHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-SCSEEECCEEGGGCCTTSCSSSBCSSC
T ss_pred HHHHHHHHhhcCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHHhCCCCCCCCccccC
Confidence 778888888 89999999997643 2445778899999999999999986 789999999999987632 333432
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCc
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
...| .+.|+.||+.+|++++.+. .+++++++||+.|||+...|..+..
T Consensus 136 ~~~~------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~ 185 (312)
T 2yy7_A 136 IMEP------------------------------STVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTT 185 (312)
T ss_dssp BCCC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTT
T ss_pred cCCC------------------------------CchhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchh
Confidence 2221 2789999999999998875 5899999999999998654422111
Q ss_pred cCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHH
Q psy16252 325 DNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITK 404 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~ 404 (545)
......+.....+.....+++++...+++||+|+|++++.++..+.. ....+++||+++ .++|+.|+++.
T Consensus 186 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~----~~~~~~~~ni~~---~~~s~~e~~~~ 255 (312)
T 2yy7_A 186 ---DYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPVE----KIKIHSSYNLAA---MSFTPTEIANE 255 (312)
T ss_dssp ---THHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHHSCGG----GCCCSSCEECCS---EEECHHHHHHH
T ss_pred ---hhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHhCccc----ccccCceEEeCC---CccCHHHHHHH
Confidence 11123333333333334567788899999999999999999876542 000148999985 58999999999
Q ss_pred HHHhhcc
Q psy16252 405 SLKEGVK 411 (545)
Q Consensus 405 l~~~~~~ 411 (545)
+.+.++.
T Consensus 256 i~~~~~~ 262 (312)
T 2yy7_A 256 IKKHIPE 262 (312)
T ss_dssp HHTTCTT
T ss_pred HHHHCCC
Confidence 9988763
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-29 Score=251.99 Aligned_cols=251 Identities=17% Similarity=0.137 Sum_probs=186.5
Q ss_pred cEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|+|||||||||||++|+++|++. |+ +|+++.|....... +.+.... ......++. |++ +.+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~---~V~~~~r~~~~~~~-~~~~~~~-------~~~~~~~~~~Dl~------d~~ 63 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQD---TVVNIDKLTYAGNL-ESLSDIS-------ESNRYNFEHADIC------DSA 63 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC---EEEEEECCCTTCCG-GGGTTTT-------TCTTEEEEECCTT------CHH
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCC---eEEEEecCCCCCch-hhhhhhh-------cCCCeEEEECCCC------CHH
Confidence 47999999999999999999997 44 78899987532111 1111100 011223333 777 677
Q ss_pred HHHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHc-cCCc-------eEEEEeccccccCCC--
Q psy16252 176 DKRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQC-KNLK-------MFTYVSTAFSNSYRK-- 240 (545)
Q Consensus 176 ~~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~-------~~v~vSS~~v~~~~~-- 240 (545)
.+..+++ ++|+|||+||..... ..++..+++|+.|+.+++++|.+. .+++ +|||+||.++++...
T Consensus 64 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~ 143 (361)
T 1kew_A 64 EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHP 143 (361)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCG
T ss_pred HHHHHHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCccc
Confidence 8888887 899999999986532 345678899999999999999874 1566 999999999887542
Q ss_pred ----------cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEc
Q psy16252 241 ----------NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFR 308 (545)
Q Consensus 241 ----------~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~R 308 (545)
+++|+... ...+.|+.||+.+|.+++.++ .+++++++|
T Consensus 144 ~~~~~~~~~~~~~E~~~~------------------------------~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vr 193 (361)
T 1kew_A 144 DEVENSVTLPLFTETTAY------------------------------APSSPYSASKASSDHLVRAWRRTYGLPTIVTN 193 (361)
T ss_dssp GGSCTTSCCCCBCTTSCC------------------------------CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred ccccccccCCCCCCCCCC------------------------------CCCCccHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 22222111 122789999999999999876 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
|+.|||+...+. .....++..+..|....+++++....++++++|+|++++.++..... +++||+
T Consensus 194 p~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~--------g~~~~v 258 (361)
T 1kew_A 194 CSNNYGPYHFPE-------KLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKA--------GETYNI 258 (361)
T ss_dssp ECEEESTTCCTT-------SHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCCT--------TCEEEE
T ss_pred eceeECCCCCcc-------cHHHHHHHHHHcCCCceEcCCCceeEeeEEHHHHHHHHHHHHhCCCC--------CCEEEe
Confidence 999999864321 11233455555565445667888899999999999999998875443 789999
Q ss_pred ecCCCCcccHHHHHHHHHHhhccc
Q psy16252 389 VNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 389 ~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
+++ .++++.|+++.+.+.+|..
T Consensus 259 ~~~--~~~s~~e~~~~i~~~~g~~ 280 (361)
T 1kew_A 259 GGH--NEKKNLDVVFTICDLLDEI 280 (361)
T ss_dssp CCC--CEEEHHHHHHHHHHHHHHH
T ss_pred cCC--CeeeHHHHHHHHHHHhCCc
Confidence 998 7899999999999998764
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=252.85 Aligned_cols=264 Identities=16% Similarity=0.122 Sum_probs=187.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCC----CCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKN----QSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~----~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+|+|||||||||||++|+++|++.|+ +|+++.|.... ....+.+..+. ......+.++. |++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~r~~~~~~~~~~~l~-----~~~~~~~~~~~~D~~----- 68 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGY---LPVVIDNFHNAFRGGGSLPESLRRVQ-----ELTGRSVEFEEMDIL----- 68 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC---CEEEEECSSSSCBCSSSSBHHHHHHH-----HHHTCCCEEEECCTT-----
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEecCCcccccccccHHHHHHHH-----hccCCceEEEECCCC-----
Confidence 47999999999999999999999876 58888886443 00111121110 00112334444 887
Q ss_pred CCHHHHHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccc
Q psy16252 172 LSPDDKRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEE 244 (545)
Q Consensus 172 l~~~~~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E 244 (545)
+.+.+.++++ ++|+|||+||..... ..+...+++|+.|+.+++++|++. ++++|||+||.++++... +++|
T Consensus 69 -~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g~~~~~~~~E 146 (348)
T 1ek6_A 69 -DQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSATVYGNPQYLPLDE 146 (348)
T ss_dssp -CHHHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGGCSCSSSSBCT
T ss_pred -CHHHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh-CCCEEEEECcHHHhCCCCCCCcCC
Confidence 6678888887 899999999976532 345678899999999999999986 789999999999987532 4444
Q ss_pred cccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-c--CCCEEEEccceeeccCCCCCC
Q psy16252 245 IIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-Q--FFPVCIFRPSIVISTWKEPIP 321 (545)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~--~l~~~i~Rp~~i~g~~~~~~~ 321 (545)
+..+.| ..+.|+.||+.+|++++.++ . +++++++||+.|||+...+..
T Consensus 147 ~~~~~p-----------------------------~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~ 197 (348)
T 1ek6_A 147 AHPTGG-----------------------------CTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCI 197 (348)
T ss_dssp TSCCCC-----------------------------CSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSC
T ss_pred CCCCCC-----------------------------CCCchHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCccccc
Confidence 432211 12789999999999998875 3 499999999999998643322
Q ss_pred CCccC--ccchHHHHHHHh--cCceeEEec------CCCCcccceehHHHHHHHHhcccccccccCCCCCCC-CEEEeec
Q psy16252 322 GWIDN--LYGPTGLVTGAQ--AGVVRTFLV------DPDVKADIVPADLVVNALICAPWNGHERFHKDPSCL-PIYNYVN 390 (545)
Q Consensus 322 g~~~~--~~~~~~~~~~~~--~g~~~~~~~------~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~-~vy~i~~ 390 (545)
|.... .......+.... .+....+++ +++...++|||+|+|++++.++..... ..+ ++||+++
T Consensus 198 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~------~~g~~~~ni~~ 271 (348)
T 1ek6_A 198 GEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKE------QCGCRIYNLGT 271 (348)
T ss_dssp CCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTT------TCCEEEEEECC
T ss_pred CcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCceEEeeEEHHHHHHHHHHHHhcccc------cCCceEEEeCC
Confidence 21110 011222333332 333333444 567889999999999999998876521 023 7999998
Q ss_pred CCCCcccHHHHHHHHHHhhccc
Q psy16252 391 SKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 391 ~~~~~~t~~el~~~l~~~~~~~ 412 (545)
+ +++|+.|+++.+.+.++..
T Consensus 272 ~--~~~s~~e~~~~i~~~~g~~ 291 (348)
T 1ek6_A 272 G--TGYSVLQMVQAMEKASGKK 291 (348)
T ss_dssp S--CCEEHHHHHHHHHHHHCSC
T ss_pred C--CCccHHHHHHHHHHHhCCC
Confidence 8 8899999999999998763
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=243.89 Aligned_cols=222 Identities=15% Similarity=0.113 Sum_probs=176.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.++|||||||||||++|+++|++.|+ +|+++.|..- |++ +.+.
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~----------------------------Dl~------d~~~ 54 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNV---EVIPTDVQDL----------------------------DIT------NVLA 54 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSE---EEEEECTTTC----------------------------CTT------CHHH
T ss_pred cceEEEECCCChHHHHHHHHHHhCCC---eEEeccCccC----------------------------CCC------CHHH
Confidence 59999999999999999999999865 7899988621 776 6677
Q ss_pred HHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCC
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKA 249 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~ 249 (545)
+.++++ ++|+|||+||..... ..+...+++|+.|+.+++++|.+. ++ +|||+||.++++... +++|+..+.
T Consensus 55 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~-~iv~~SS~~v~~~~~~~~~~E~~~~~ 132 (292)
T 1vl0_A 55 VNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-GA-EIVQISTDYVFDGEAKEPITEFDEVN 132 (292)
T ss_dssp HHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGSCSCCSSCBCTTSCCC
T ss_pred HHHHHHhcCCCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEechHHeECCCCCCCCCCCCCCC
Confidence 888887 799999999986542 456778999999999999999997 66 999999999987643 455543222
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccc
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYG 329 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~ 329 (545)
| .+.|+.||+.+|++++.+. .+++++||+.|||+ .. + +
T Consensus 133 ~------------------------------~~~Y~~sK~~~E~~~~~~~--~~~~~lR~~~v~G~-~~---~----~-- 170 (292)
T 1vl0_A 133 P------------------------------QSAYGKTKLEGENFVKALN--PKYYIVRTAWLYGD-GN---N----F-- 170 (292)
T ss_dssp C------------------------------CSHHHHHHHHHHHHHHHHC--SSEEEEEECSEESS-SS---C----H--
T ss_pred C------------------------------ccHHHHHHHHHHHHHHhhC--CCeEEEeeeeeeCC-Cc---C----h--
Confidence 2 2789999999999999874 47999999999997 21 1 1
Q ss_pred hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhh
Q psy16252 330 PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEG 409 (545)
Q Consensus 330 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~ 409 (545)
...++..+..+....+.+ +...++++++|+|++++.++... . +++||++++ +++|+.|+++.+.+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~-~--------~~~~~i~~~--~~~s~~e~~~~i~~~~ 237 (292)
T 1vl0_A 171 VKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEK-N--------YGTFHCTCK--GICSWYDFAVEIFRLT 237 (292)
T ss_dssp HHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHT-C--------CEEEECCCB--SCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhcC-C--------CcEEEecCC--CCccHHHHHHHHHHHh
Confidence 123444444455443443 57889999999999999998765 4 689999998 8899999999999998
Q ss_pred ccc
Q psy16252 410 VKI 412 (545)
Q Consensus 410 ~~~ 412 (545)
|..
T Consensus 238 g~~ 240 (292)
T 1vl0_A 238 GID 240 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=248.17 Aligned_cols=252 Identities=17% Similarity=0.089 Sum_probs=182.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|||||||||||++|+++|++.|+ +|+++.|...... ..+... ......+++. |+.++.
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~--~~~~~~-------~~~~~~~~~~~D~~~~~---- 88 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDGH---EVTVVDNFFTGRK--RNVEHW-------IGHENFELINHDVVEPL---- 88 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCG--GGTGGG-------TTCTTEEEEECCTTSCC----
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCCC---EEEEEeCCCccch--hhhhhh-------ccCCceEEEeCccCChh----
Confidence 4679999999999999999999999875 7899998754321 111110 0011223333 666432
Q ss_pred HHHHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
+.++|+|||+||..... ..+...+++|+.|+.+++++|.+. ++ +|||+||.++++... +++|..+.
T Consensus 89 -------~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~g~~~~~~~~E~~~~ 159 (343)
T 2b69_A 89 -------YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSEVYGDPEVHPQSEDYWG 159 (343)
T ss_dssp -------CCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGGGGBSCSSSSBCTTCCC
T ss_pred -------hcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CC-cEEEECcHHHhCCCCCCCCcccccc
Confidence 35799999999976532 345678899999999999999987 55 899999999987642 44444211
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
... + ....+.|+.||+.+|++++.+. .+++++++||+.|||+...+..+
T Consensus 160 ~~~----------------------~---~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~---- 210 (343)
T 2b69_A 160 HVN----------------------P---IGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---- 210 (343)
T ss_dssp BCC----------------------S---SSTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCC----
T ss_pred cCC----------------------C---CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcc----
Confidence 000 0 0112679999999999998765 68999999999999986543211
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
.....++..+..|....++++++...++++|+|+|++++.++.... +++||++++ +++|+.|+++.+.
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~---------~~~~~i~~~--~~~s~~e~~~~i~ 278 (343)
T 2b69_A 211 -RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV---------SSPVNLGNP--EEHTILEFAQLIK 278 (343)
T ss_dssp -CHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSC---------CSCEEESCC--CEEEHHHHHHHHH
T ss_pred -cHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcCC---------CCeEEecCC--CCCcHHHHHHHHH
Confidence 1123445555566655567888899999999999999998876432 579999998 8999999999999
Q ss_pred Hhhccc
Q psy16252 407 KEGVKI 412 (545)
Q Consensus 407 ~~~~~~ 412 (545)
+.+|..
T Consensus 279 ~~~g~~ 284 (343)
T 2b69_A 279 NLVGSG 284 (343)
T ss_dssp HHHTCC
T ss_pred HHhCCC
Confidence 998764
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=244.11 Aligned_cols=229 Identities=13% Similarity=0.039 Sum_probs=170.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|||||||||||++|+++|+++|+ +|++++|++... ++. ..+..
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~---~V~~l~R~~~~~--------------------------~~~------~~~~~ 45 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH---EVTLVSRKPGPG--------------------------RIT------WDELA 45 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCTT--------------------------EEE------HHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCcC--------------------------eee------cchhh
Confidence 6899999999999999999999987 688999975432 111 01112
Q ss_pred HHHhcCccEEEEccccc------cch-HHHHHHHHHhHHHHHHHHHHHHHcc-CCceEEEEeccccccCCC--ccccccc
Q psy16252 178 RLVTSKVNLVFHCAATL------RFD-EELKEAIRTNMCATQTMLDLAKQCK-NLKMFTYVSTAFSNSYRK--NIEEIIY 247 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~------~~~-~~~~~~~~~Nv~gt~~ll~~a~~~~-~~~~~v~vSS~~v~~~~~--~i~E~~~ 247 (545)
...++++|+|||+|+.. .+. ...+.+++.|+.+|.+|++++...+ +.+.||++||+++|++.. .++|+..
T Consensus 46 ~~~l~~~d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p 125 (298)
T 4b4o_A 46 ASGLPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSP 125 (298)
T ss_dssp HHCCCSCSEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCC
T ss_pred HhhccCCCEEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCC
Confidence 34457899999999852 122 3346678999999999999999863 345699999999998754 4455432
Q ss_pred CCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCc
Q psy16252 248 KAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNL 327 (545)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~ 327 (545)
..| .+.|+.+|...|........+++++++||+.|||+... .
T Consensus 126 ~~~------------------------------~~~~~~~~~~~e~~~~~~~~~~~~~~~r~~~v~g~~~~--------~ 167 (298)
T 4b4o_A 126 GGD------------------------------FDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGG--------A 167 (298)
T ss_dssp CSC------------------------------SSHHHHHHHHHHHHHCCSSSSSEEEEEEECEEECTTSH--------H
T ss_pred ccc------------------------------cchhHHHHHHHHHHHHhhccCCceeeeeeeeEEcCCCC--------c
Confidence 222 15677777777765544347899999999999997421 1
Q ss_pred cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHH
Q psy16252 328 YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLK 407 (545)
Q Consensus 328 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~ 407 (545)
...+......|... ..+++++.++||||||+|++++.++.++.. .++||++++ +++|+.|+++.+.+
T Consensus 168 --~~~~~~~~~~~~~~-~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~--------~g~yn~~~~--~~~t~~e~~~~ia~ 234 (298)
T 4b4o_A 168 --MGHMLLPFRLGLGG-PIGSGHQFFPWIHIGDLAGILTHALEANHV--------HGVLNGVAP--SSATNAEFAQTFGA 234 (298)
T ss_dssp --HHHHHHHHHTTCCC-CBTTSCSBCCEEEHHHHHHHHHHHHHCTTC--------CEEEEESCS--CCCBHHHHHHHHHH
T ss_pred --hhHHHHHHhcCCcc-eecccCceeecCcHHHHHHHHHHHHhCCCC--------CCeEEEECC--CccCHHHHHHHHHH
Confidence 12333334444443 458899999999999999999999987765 579999999 89999999999999
Q ss_pred hhccc
Q psy16252 408 EGVKI 412 (545)
Q Consensus 408 ~~~~~ 412 (545)
.++++
T Consensus 235 ~lgrp 239 (298)
T 4b4o_A 235 ALGRR 239 (298)
T ss_dssp HHTCC
T ss_pred HhCcC
Confidence 99874
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=251.43 Aligned_cols=263 Identities=16% Similarity=0.098 Sum_probs=189.6
Q ss_pred cEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|+|||||||||||++|+++|++. |+ +|++++|+..... .+ ......+++. |+.++ .+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~~~~---~~----------~~~~~~~~~~~D~~~~-----~~ 59 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY---EVYGLDIGSDAIS---RF----------LNHPHFHFVEGDISIH-----SE 59 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC---EEEEEESCCGGGG---GG----------TTCTTEEEEECCTTTC-----SH
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC---EEEEEeCCcchHH---Hh----------hcCCCeEEEeccccCc-----HH
Confidence 57999999999999999999997 54 7899999753211 00 0111233344 77632 24
Q ss_pred HHHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
.+..+++++|+|||+||.... ...+...+++|+.++.+++++|++. + ++|||+||.++++... .++|+..+.+
T Consensus 60 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~ 137 (345)
T 2bll_A 60 WIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSEVYGMCSDKYFDEDHSNLI 137 (345)
T ss_dssp HHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGGGGBTCCCSSBCTTTCCCB
T ss_pred HHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecHHHcCCCCCCCcCCcccccc
Confidence 577788899999999997653 2445678899999999999999987 5 8999999999987643 3444432211
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCcc
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLY 328 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~ 328 (545)
..+ .....+.|+.||+.+|++++.+. .+++++++||+.|||+...+...+..+..
T Consensus 138 ~~~-----------------------~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~ 194 (345)
T 2bll_A 138 VGP-----------------------VNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSS 194 (345)
T ss_dssp CCC-----------------------TTCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBC
T ss_pred cCc-----------------------ccCcccccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccc
Confidence 000 00111589999999999998875 68999999999999987543211111111
Q ss_pred -chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCC-cccHHHHHHHHH
Q psy16252 329 -GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDN-PLTWGEFITKSL 406 (545)
Q Consensus 329 -~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~-~~t~~el~~~l~ 406 (545)
....++..+..|....++++++...++++++|+|++++.++..... ...+++||++++ + ++|+.|+++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~-----~~~g~~~~i~~~--~~~~s~~e~~~~i~ 267 (345)
T 2bll_A 195 RAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGN-----RCDGEIINIGNP--ENEASIEELGEMLL 267 (345)
T ss_dssp HHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGG-----TTTTEEEEECCT--TSEEEHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhhccc-----cCCCceEEeCCC--CCCCCHHHHHHHHH
Confidence 1234555566666555677888899999999999999999876531 013689999987 5 899999999999
Q ss_pred HhhcccC
Q psy16252 407 KEGVKIP 413 (545)
Q Consensus 407 ~~~~~~~ 413 (545)
+.++..+
T Consensus 268 ~~~g~~~ 274 (345)
T 2bll_A 268 ASFEKHP 274 (345)
T ss_dssp HHHHTCT
T ss_pred HHhCCCc
Confidence 9987643
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=256.36 Aligned_cols=274 Identities=12% Similarity=0.036 Sum_probs=185.9
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCC--------------HHHHHHhhHHHHHHhhhhcCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS--------------PQQRIDKMLDTVAISLKFTCS 159 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~--------------~~~rl~~~~~~~~~~~~~~~~ 159 (545)
+..+++|||||||||||++|+++|++.|+ +|+++.|...... ..+.+... . .......
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~-~~~~~~v 79 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKNY---EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW----K-ALTGKSI 79 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHH----H-HHHCCCC
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCCC---eEEEEEecCccccccccccccccccchhhhhhhhH----h-hccCCce
Confidence 35689999999999999999999999876 6888877521100 00111110 0 1112234
Q ss_pred Cccc-CCCCCCCCCCHHHHHHHhcC--ccEEEEccccccchH------HHHHHHHHhHHHHHHHHHHHHHccCC-ceEEE
Q psy16252 160 TSKE-SAQAPDLGLSPDDKRLVTSK--VNLVFHCAATLRFDE------ELKEAIRTNMCATQTMLDLAKQCKNL-KMFTY 229 (545)
Q Consensus 160 ~~~~-Dl~~~~lgl~~~~~~~l~~~--vd~Vih~Aa~~~~~~------~~~~~~~~Nv~gt~~ll~~a~~~~~~-~~~v~ 229 (545)
.++. |++ +.+.+.+++++ +|+|||+||...... .+...+++|+.||.+++++|.+. ++ ++|||
T Consensus 80 ~~~~~Dl~------d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~~~V~ 152 (404)
T 1i24_A 80 ELYVGDIC------DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVK 152 (404)
T ss_dssp EEEESCTT------SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred EEEECCCC------CHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh-CCCcEEEE
Confidence 4445 887 67788888887 999999999764321 12347799999999999999987 55 59999
Q ss_pred EeccccccCCC-cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEE
Q psy16252 230 VSTAFSNSYRK-NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCI 306 (545)
Q Consensus 230 vSS~~v~~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i 306 (545)
+||.++++... +++|+.++... .......+ ......+.|+.||+.+|++++.++ .++++++
T Consensus 153 ~SS~~vyg~~~~~~~E~~~~~~~---------------~~~~~~~~-~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~i 216 (404)
T 1i24_A 153 LGTMGEYGTPNIDIEEGYITITH---------------NGRTDTLP-YPKQASSFYHLSKVHDSHNIAFTCKAWGIRATD 216 (404)
T ss_dssp ECCGGGGCCCSSCBCSSEEEEEE---------------TTEEEEEE-CCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred eCcHHHhCCCCCCCCcccccccc---------------cccccccc-CCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99999987643 34443110000 00000000 001123789999999999998775 5899999
Q ss_pred EccceeeccCCCCC---CCCccCc-------cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccccc
Q psy16252 307 FRPSIVISTWKEPI---PGWIDNL-------YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERF 376 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~---~g~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~ 376 (545)
+||+.|||+...+. +++.... .....++..+..|....++++++...++|||+|||++++.++.....
T Consensus 217 vrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~-- 294 (404)
T 1i24_A 217 LNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAK-- 294 (404)
T ss_dssp EEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCC--
T ss_pred EecceeeCCCCCccccccccccccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCccc--
Confidence 99999999865431 1111100 12345566666676655678888999999999999999999876543
Q ss_pred CCCCCCC--CEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 377 HKDPSCL--PIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 377 ~~~~~~~--~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
.+ ++||+++ .++|+.|+++.+.+.
T Consensus 295 -----~g~~~~yni~~---~~~s~~e~~~~i~~~ 320 (404)
T 1i24_A 295 -----AGEFRVFNQFT---EQFSVNELASLVTKA 320 (404)
T ss_dssp -----TTCEEEEEECS---EEEEHHHHHHHHHHH
T ss_pred -----CCCceEEEECC---CCCcHHHHHHHHHHH
Confidence 24 6999986 479999999999987
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-29 Score=244.53 Aligned_cols=231 Identities=20% Similarity=0.200 Sum_probs=177.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|||||||||||++|+++|+ +|+ +|+++.|+...... |+. +.+.+
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~---~V~~~~r~~~~~~~------------------------D~~------d~~~~ 46 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVG---NLIALDVHSKEFCG------------------------DFS------NPKGV 46 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTS---EEEEECTTCSSSCC------------------------CTT------CHHHH
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCC---eEEEeccccccccc------------------------cCC------CHHHH
Confidence 579999999999999999999 765 78999987521100 666 66788
Q ss_pred HHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 178 RLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 178 ~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
.+++++ +|+|||+||..... ..++..+++|+.|+.+++++|++. ++ +|||+||.++++... ++.|+..+.|
T Consensus 47 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p 124 (299)
T 1n2s_A 47 AETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-GA-WVVHYSTDYVFPGTGDIPWQETDATSP 124 (299)
T ss_dssp HHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-TC-EEEEEEEGGGSCCCTTCCBCTTSCCCC
T ss_pred HHHHHhcCCCEEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEecccEEeCCCCCCCCCCCCCCC
Confidence 888876 99999999986532 456778899999999999999987 56 799999999988643 3444432222
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
.+.|+.||+.+|++++.+. .+++++||+.|||+... ++ .
T Consensus 125 ------------------------------~~~Y~~sK~~~E~~~~~~~--~~~~ilRp~~v~G~~~~-------~~--~ 163 (299)
T 1n2s_A 125 ------------------------------LNVYGKTKLAGEKALQDNC--PKHLIFRTSWVYAGKGN-------NF--A 163 (299)
T ss_dssp ------------------------------SSHHHHHHHHHHHHHHHHC--SSEEEEEECSEECSSSC-------CH--H
T ss_pred ------------------------------ccHHHHHHHHHHHHHHHhC--CCeEEEeeeeecCCCcC-------cH--H
Confidence 2789999999999999875 49999999999998532 11 2
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhc
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~ 410 (545)
..++..+..|......+ +...++++++|+|++++.++..... ....+++||++++ +++|+.|+++.+.+.+|
T Consensus 164 ~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~~----~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g 235 (299)
T 1n2s_A 164 KTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAIRVALN----KPEVAGLYHLVAG--GTTTWHDYAALVFDEAR 235 (299)
T ss_dssp HHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHHHHHHH----CGGGCEEEECCCB--SCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEeec--CcccCCeeHHHHHHHHHHHHHHhcc----ccccCceEEEeCC--CCCCHHHHHHHHHHHhC
Confidence 33445555565443443 4789999999999999999876521 0001689999998 79999999999999988
Q ss_pred ccC
Q psy16252 411 KIP 413 (545)
Q Consensus 411 ~~~ 413 (545)
..+
T Consensus 236 ~~~ 238 (299)
T 1n2s_A 236 KAG 238 (299)
T ss_dssp HHT
T ss_pred CCc
Confidence 753
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=243.24 Aligned_cols=222 Identities=19% Similarity=0.193 Sum_probs=178.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|||||||||||++|++.|++.|+ +|+++.|..- |+. +.+.+
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~----------------------------D~~------d~~~~ 48 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEY---DIYPFDKKLL----------------------------DIT------NISQV 48 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTE---EEEEECTTTS----------------------------CTT------CHHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCC---EEEEeccccc----------------------------CCC------CHHHH
Confidence 4899999999999999999999865 7999988421 776 66788
Q ss_pred HHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 178 RLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 178 ~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
.++++ ++|+|||+||..... ..+...+++|+.|+.+++++|++. ++ +|||+||.++++... +++|+..+.|
T Consensus 49 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p 126 (287)
T 3sc6_A 49 QQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLV-GA-KLVYISTDYVFQGDRPEGYDEFHNPAP 126 (287)
T ss_dssp HHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGSCCCCSSCBCTTSCCCC
T ss_pred HHHHHhcCCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchhhhcCCCCCCCCCCCCCCCC
Confidence 88887 699999999987643 356788999999999999999997 66 699999999987643 4555543333
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
. +.|+.||+.+|++++.+. .+++++||+.|||+.... ..
T Consensus 127 ~------------------------------~~Y~~sK~~~E~~~~~~~--~~~~ilR~~~v~G~~~~~---------~~ 165 (287)
T 3sc6_A 127 I------------------------------NIYGASKYAGEQFVKELH--NKYFIVRTSWLYGKYGNN---------FV 165 (287)
T ss_dssp C------------------------------SHHHHHHHHHHHHHHHHC--SSEEEEEECSEECSSSCC---------HH
T ss_pred C------------------------------CHHHHHHHHHHHHHHHhC--CCcEEEeeeeecCCCCCc---------HH
Confidence 2 789999999999999875 478999999999975321 12
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhc
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~ 410 (545)
..++..+..+....+++ +...++++++|+|++++.++..+. +++||++++ +++|+.|+++.+.+.+|
T Consensus 166 ~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~---------~~~~~i~~~--~~~s~~e~~~~i~~~~g 232 (287)
T 3sc6_A 166 KTMIRLGKEREEISVVA--DQIGSPTYVADLNVMINKLIHTSL---------YGTYHVSNT--GSCSWFEFAKKIFSYAN 232 (287)
T ss_dssp HHHHHHHTTCSEEEEEC--SCEECCEEHHHHHHHHHHHHTSCC---------CEEEECCCB--SCEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCeEeec--CcccCceEHHHHHHHHHHHHhCCC---------CCeEEEcCC--CcccHHHHHHHHHHHcC
Confidence 34455555565544444 488999999999999999987643 469999998 88999999999999988
Q ss_pred cc
Q psy16252 411 KI 412 (545)
Q Consensus 411 ~~ 412 (545)
..
T Consensus 233 ~~ 234 (287)
T 3sc6_A 233 MK 234 (287)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=245.36 Aligned_cols=252 Identities=16% Similarity=0.020 Sum_probs=186.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+|||||||||||++|+++|++.|+ +|+++.|+...... .++.... .....+++. |++ +.
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~-~~~~~~~-------~~~~~~~~~~Dl~------d~ 64 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGY---EVYGADRRSGEFAS-WRLKELG-------IENDVKIIHMDLL------EF 64 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCCSTTTT-HHHHHTT-------CTTTEEECCCCTT------CH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCCccccc-ccHhhcc-------ccCceeEEECCCC------CH
Confidence 468999999999999999999999875 78999998654321 2222110 001223334 776 67
Q ss_pred HHHHHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCC-ceEEEEeccccccCCC--cccccc
Q psy16252 175 DDKRLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNL-KMFTYVSTAFSNSYRK--NIEEII 246 (545)
Q Consensus 175 ~~~~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~-~~~v~vSS~~v~~~~~--~i~E~~ 246 (545)
+.+.+++++ +|+|||+||..... +.++..+++|+.|+.+++++|.++ ++ ++|||+||.++++... ++.|..
T Consensus 65 ~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~~vyg~~~~~~~~e~~ 143 (345)
T 2z1m_A 65 SNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQASTSEMFGKVQEIPQTEKT 143 (345)
T ss_dssp HHHHHHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEEEGGGGCSCSSSSBCTTS
T ss_pred HHHHHHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEechhhcCCCCCCCCCccC
Confidence 788888875 59999999986532 346778899999999999999987 66 8999999999987643 334432
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCc
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
...| .+.|+.||+.+|.+++.++ .+++++++|+.+++|+...
T Consensus 144 ~~~~------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~------ 187 (345)
T 2z1m_A 144 PFYP------------------------------RSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRG------ 187 (345)
T ss_dssp CCCC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSC------
T ss_pred CCCC------------------------------CChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCC------
Confidence 2111 2789999999999998876 5899999999999997432
Q ss_pred cCccc--hHHHHHHHhcCce-eEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHH
Q psy16252 325 DNLYG--PTGLVTGAQAGVV-RTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEF 401 (545)
Q Consensus 325 ~~~~~--~~~~~~~~~~g~~-~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el 401 (545)
.+... ...++..+..|.. ...+++++...++++++|+|++++.++..+. +++||++++ +++++.|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~~---------~~~~~i~~~--~~~s~~e~ 256 (345)
T 2z1m_A 188 IEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPE---------PDDYVIATG--ETHTVREF 256 (345)
T ss_dssp TTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHTSSS---------CCCEEECCS--CCEEHHHH
T ss_pred CcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCCC---------CceEEEeCC--CCccHHHH
Confidence 11110 1122333445543 3356777888999999999999999986543 379999998 88999999
Q ss_pred HHHHHHhhccc
Q psy16252 402 ITKSLKEGVKI 412 (545)
Q Consensus 402 ~~~l~~~~~~~ 412 (545)
++.+.+.+|..
T Consensus 257 ~~~i~~~~g~~ 267 (345)
T 2z1m_A 257 VEKAAKIAGFD 267 (345)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhCCC
Confidence 99999998764
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=248.07 Aligned_cols=230 Identities=13% Similarity=0.055 Sum_probs=175.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+||||| +||||++|++.|++.|+ +|+++.|+..... ...+++. |+. +.
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~------------------~~~~~~~~Dl~------d~ 53 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGH---EVTGLRRSAQPMP------------------AGVQTLIADVT------RP 53 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTC---CEEEEECTTSCCC------------------TTCCEEECCTT------CG
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCC---EEEEEeCCccccc------------------cCCceEEccCC------Ch
Confidence 358999999 59999999999999976 6889999865321 1333444 777 45
Q ss_pred HHHHHHhcC-ccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCCC
Q psy16252 175 DDKRLVTSK-VNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAHT 251 (545)
Q Consensus 175 ~~~~~l~~~-vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~~ 251 (545)
+.+..++++ +|+|||+||... ...+..+++|+.++.+++++|++. ++++|||+||.++++... +++|+....|.
T Consensus 54 ~~~~~~~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~ll~a~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~ 130 (286)
T 3gpi_A 54 DTLASIVHLRPEILVYCVAASE--YSDEHYRLSYVEGLRNTLSALEGA-PLQHVFFVSSTGVYGQEVEEWLDEDTPPIAK 130 (286)
T ss_dssp GGCTTGGGGCCSEEEECHHHHH--HC-----CCSHHHHHHHHHHTTTS-CCCEEEEEEEGGGCCCCCSSEECTTSCCCCC
T ss_pred HHHHHhhcCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHhhC-CCCEEEEEcccEEEcCCCCCCCCCCCCCCCC
Confidence 567777777 999999999743 345677899999999999999986 889999999999998753 34555433222
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchH
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPT 331 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~ 331 (545)
+.|+.||+.+|++ .+. ++++|+||+.|||+...
T Consensus 131 ------------------------------~~Y~~sK~~~E~~-~~~---~~~~ilR~~~v~G~~~~------------- 163 (286)
T 3gpi_A 131 ------------------------------DFSGKRMLEAEAL-LAA---YSSTILRFSGIYGPGRL------------- 163 (286)
T ss_dssp ------------------------------SHHHHHHHHHHHH-GGG---SSEEEEEECEEEBTTBC-------------
T ss_pred ------------------------------ChhhHHHHHHHHH-Hhc---CCeEEEecccccCCCch-------------
Confidence 7899999999999 654 99999999999997532
Q ss_pred HHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhcc
Q psy16252 332 GLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVK 411 (545)
Q Consensus 332 ~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~ 411 (545)
.++..+.. .. .+++++...++++++|+|++++.++..+.. ...+++||++++ +++|+.|+++.+.+.+|.
T Consensus 164 ~~~~~~~~-~~--~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~s~~e~~~~i~~~~g~ 233 (286)
T 3gpi_A 164 RMIRQAQT-PE--QWPARNAWTNRIHRDDGAAFIAYLIQQRSH-----AVPERLYIVTDN--QPLPVHDLLRWLADRQGI 233 (286)
T ss_dssp HHHHHTTC-GG--GSCSSBCEECEEEHHHHHHHHHHHHHHHTT-----SCCCSEEEECCS--CCEEHHHHHHHHHHHTTC
T ss_pred hHHHHHHh-cc--cCCCcCceeEEEEHHHHHHHHHHHHhhhcc-----CCCCceEEEeCC--CCCCHHHHHHHHHHHcCC
Confidence 23333333 21 236778899999999999999999987421 014799999998 899999999999999887
Q ss_pred cC
Q psy16252 412 IP 413 (545)
Q Consensus 412 ~~ 413 (545)
..
T Consensus 234 ~~ 235 (286)
T 3gpi_A 234 AY 235 (286)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-28 Score=240.42 Aligned_cols=244 Identities=19% Similarity=0.125 Sum_probs=179.5
Q ss_pred EEEEeccccccchHHHHHHHhh--CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRS--FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~--g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|||||||||||++|+++|++. |+ +|+++.|...... ...++. |+. +.+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~~~~~-------------------~~~~~~~D~~------d~~ 52 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKK---NVIASDIVQRDTG-------------------GIKFITLDVS------NRD 52 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGG---GEEEEESSCCCCT-------------------TCCEEECCTT------CHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCC---EEEEecCCCcccc-------------------CceEEEecCC------CHH
Confidence 4899999999999999999998 54 5888888754321 122233 776 677
Q ss_pred HHHHHhc--CccEEEEccccccc--hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---cccccccC
Q psy16252 176 DKRLVTS--KVNLVFHCAATLRF--DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---NIEEIIYK 248 (545)
Q Consensus 176 ~~~~l~~--~vd~Vih~Aa~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---~i~E~~~~ 248 (545)
.+.++++ ++|+|||+||.... ...+...+++|+.|+.+++++|++. ++++|||+||.++++... +++|....
T Consensus 53 ~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~~~~e~~~~ 131 (317)
T 3ajr_A 53 EIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQH-RVEKVVIPSTIGVFGPETPKNKVPSITIT 131 (317)
T ss_dssp HHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCCTTSCSSSBCSSSCC
T ss_pred HHHHHHhhcCCcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHc-CCCEEEEecCHHHhCCCCCCCCccccccC
Confidence 8888887 89999999997542 2345778899999999999999987 789999999999987632 23333211
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
.| .+.|+.||+.+|++++.+. .+++++++||+.+||+...|..+..+
T Consensus 132 ~p------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~- 180 (317)
T 3ajr_A 132 RP------------------------------RTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTD- 180 (317)
T ss_dssp CC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSST-
T ss_pred CC------------------------------CchHHHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchh-
Confidence 11 2789999999999998765 68999999999999976543222111
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
.....+.....+.....+++++...++++++|+|++++.++..+.. ....+++||+++ .++|+.|+++.+.
T Consensus 181 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~----~~~~g~~~~i~~---~~~s~~e~~~~i~ 251 (317)
T 3ajr_A 181 --YAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRD----KLVLRNGYNVTA---YTFTPSELYSKIK 251 (317)
T ss_dssp --HHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCCGG----GCSSCSCEECCS---EEECHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCCcc----ccccCceEecCC---ccccHHHHHHHHH
Confidence 1122333333333333456778899999999999999998876542 001247999986 4799999999999
Q ss_pred Hhhcc
Q psy16252 407 KEGVK 411 (545)
Q Consensus 407 ~~~~~ 411 (545)
+.++.
T Consensus 252 ~~~~~ 256 (317)
T 3ajr_A 252 ERIPE 256 (317)
T ss_dssp TTCCS
T ss_pred HHCCc
Confidence 88763
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=237.62 Aligned_cols=221 Identities=14% Similarity=0.120 Sum_probs=169.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|||||| ||||++|+++|++.|+ +|++++|+.... ..+ .....+++. |+.+. +
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~---~V~~~~r~~~~~---~~~-----------~~~~~~~~~~D~~d~----~-- 60 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGW---RIIGTSRNPDQM---EAI-----------RASGAEPLLWPGEEP----S-- 60 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTC---EEEEEESCGGGH---HHH-----------HHTTEEEEESSSSCC----C--
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCC---EEEEEEcChhhh---hhH-----------hhCCCeEEEeccccc----c--
Confidence 378999998 9999999999999976 799999975321 111 112334444 77741 1
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCC--cccccccCCCCC
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRK--NIEEIIYKAHTH 252 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~~~ 252 (545)
++++|+|||+|+......+ .+.+++++|++. .++++|||+||.++++... +++|+..+.|.
T Consensus 61 -----~~~~d~vi~~a~~~~~~~~----------~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~- 124 (286)
T 3ius_A 61 -----LDGVTHLLISTAPDSGGDP----------VLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPT- 124 (286)
T ss_dssp -----CTTCCEEEECCCCBTTBCH----------HHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCC-
T ss_pred -----cCCCCEEEECCCccccccH----------HHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCC-
Confidence 5789999999998654322 257889999884 3789999999999998753 35555433322
Q ss_pred HHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHH
Q psy16252 253 YSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTG 332 (545)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~ 332 (545)
+.|+.||+.+|++++++ .+++++|+||+.|||+...++.
T Consensus 125 -----------------------------~~Y~~sK~~~E~~~~~~-~~~~~~ilRp~~v~G~~~~~~~----------- 163 (286)
T 3ius_A 125 -----------------------------AARGRWRVMAEQQWQAV-PNLPLHVFRLAGIYGPGRGPFS----------- 163 (286)
T ss_dssp -----------------------------SHHHHHHHHHHHHHHHS-TTCCEEEEEECEEEBTTBSSST-----------
T ss_pred -----------------------------CHHHHHHHHHHHHHHhh-cCCCEEEEeccceECCCchHHH-----------
Confidence 78999999999999997 6899999999999998654321
Q ss_pred HHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 333 LVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 333 ~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
.+..|....+.++ ....+++|++|+|++++.++..+.. +++||++++ +++|+.|+++.+.+.+|..
T Consensus 164 ---~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~~~~~--------g~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 229 (286)
T 3ius_A 164 ---KLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMARPDP--------GAVYNVCDD--EPVPPQDVIAYAAELQGLP 229 (286)
T ss_dssp ---TSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHHSCCT--------TCEEEECCS--CCBCHHHHHHHHHHHHTCC
T ss_pred ---HHhcCCccccCCC-CcccceEEHHHHHHHHHHHHhCCCC--------CCEEEEeCC--CCccHHHHHHHHHHHcCCC
Confidence 1223444444444 6788999999999999999987665 789999998 8899999999999998874
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=241.14 Aligned_cols=245 Identities=18% Similarity=0.142 Sum_probs=183.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.|+ +|+++.|...... +. +. ....++. |++ +.+.
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~--~~-----------~~-~~~~~~~~Dl~------~~~~ 57 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGL---EVAVLDNLATGKR--EN-----------VP-KGVPFFRVDLR------DKEG 57 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC---EEEEECCCSSCCG--GG-----------SC-TTCCEECCCTT------CHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECCCcCch--hh-----------cc-cCeEEEECCCC------CHHH
Confidence 5799999999999999999999876 6888888543211 00 00 1223333 776 6677
Q ss_pred HHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecc-ccccC-C--Cccccccc
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA-FSNSY-R--KNIEEIIY 247 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~-~v~~~-~--~~i~E~~~ 247 (545)
+.++++ ++|+|||+||..... ..+...+++|+.|+.+++++|++. ++++|||+||. ++++. . .+++|+..
T Consensus 58 ~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~~g~~~~~~~~~E~~~ 136 (311)
T 2p5y_A 58 VERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-GVEKLVFASTGGAIYGEVPEGERAEETWP 136 (311)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEHHHHHCCCCTTCCBCTTSC
T ss_pred HHHHHHhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCChhhcCCCCCCCCcCCCCC
Confidence 888887 899999999976532 345678899999999999999986 78999999999 77764 2 23444432
Q ss_pred CCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCcc
Q psy16252 248 KAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
+.| .+.|+.||+.+|++++.++ .+++++++||+.|||+...+.. ..
T Consensus 137 ~~~------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~--~~ 184 (311)
T 2p5y_A 137 PRP------------------------------KSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHG--EA 184 (311)
T ss_dssp CCC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSS--TT
T ss_pred CCC------------------------------CChHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCC--cC
Confidence 222 2689999999999998775 6899999999999998643211 00
Q ss_pred CccchHHHHHHHhcCceeEEe-----cCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHH
Q psy16252 326 NLYGPTGLVTGAQAGVVRTFL-----VDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGE 400 (545)
Q Consensus 326 ~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~e 400 (545)
+ ....++..+..|....++ +++....++++++|+|++++.++..+ +++||++++ .++|+.|
T Consensus 185 ~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~----------~~~~~i~~~--~~~s~~e 250 (311)
T 2p5y_A 185 G--VVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSL----------EGIYNVGTG--EGHTTRE 250 (311)
T ss_dssp H--HHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHHHHC----------CEEEEESCS--CCEEHHH
T ss_pred c--HHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHHhCC----------CCEEEeCCC--CCccHHH
Confidence 0 112344445556555555 77788899999999999999987642 479999998 8999999
Q ss_pred HHHHHHHhhccc
Q psy16252 401 FITKSLKEGVKI 412 (545)
Q Consensus 401 l~~~l~~~~~~~ 412 (545)
+++.+.+.+|..
T Consensus 251 ~~~~i~~~~g~~ 262 (311)
T 2p5y_A 251 VLMAVAEAAGKA 262 (311)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHhCCC
Confidence 999999998763
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=248.74 Aligned_cols=248 Identities=19% Similarity=0.150 Sum_probs=183.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhC-CCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSF-PRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g-~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+++|+|||||||||||++|+++|++.| + .|+++.|...... ...+ . ... +. |+.
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~~-~~~~-----------~--~~~-~~~d~~------ 99 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGIT---DILVVDNLKDGTK-FVNL-----------V--DLN-IADYMD------ 99 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCC---CEEEEECCSSGGG-GGGT-----------T--TSC-CSEEEE------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCc---EEEEEecCCCcch-hhcc-----------c--Cce-EeeecC------
Confidence 457899999999999999999999987 4 6888888754311 0000 0 111 22 555
Q ss_pred CHHHHHHHhc-----CccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccc
Q psy16252 173 SPDDKRLVTS-----KVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEE 244 (545)
Q Consensus 173 ~~~~~~~l~~-----~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E 244 (545)
+.+.+..+++ ++|+|||+||.... ...++..+++|+.|+.+++++|.+. ++ +|||+||.++++... +++|
T Consensus 100 ~~~~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~-~~-r~V~~SS~~v~g~~~~~~~~E 177 (357)
T 2x6t_A 100 KEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTSDFIES 177 (357)
T ss_dssp HHHHHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGGGGCSCSSCCCSS
T ss_pred cHHHHHHHHhhcccCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcchHHhCCCCCCCcCC
Confidence 5567777776 59999999997653 3456778899999999999999997 67 999999999987643 3444
Q ss_pred cccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCC
Q psy16252 245 IIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPG 322 (545)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g 322 (545)
+....| .+.|+.||+.+|++++.+. .+++++++||+.|||+...+..
T Consensus 178 ~~~~~p------------------------------~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~- 226 (357)
T 2x6t_A 178 REYEKP------------------------------LNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKG- 226 (357)
T ss_dssp GGGCCC------------------------------SSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCG-
T ss_pred cCCCCC------------------------------CChhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCc-
Confidence 432222 2789999999999999876 5899999999999998654311
Q ss_pred CccCccchHHHHHHHhcCceeEEecCCCC-cccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHH
Q psy16252 323 WIDNLYGPTGLVTGAQAGVVRTFLVDPDV-KADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEF 401 (545)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el 401 (545)
... .....++..+..|....++++++. ..++++++|+|++++.++.... +++||++++ +++|+.|+
T Consensus 227 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~---------~~~~~i~~~--~~~s~~e~ 293 (357)
T 2x6t_A 227 SMA--SVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV---------SGIFNLGTG--RAESFQAV 293 (357)
T ss_dssp GGS--CHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCC---------CEEEEESCS--CCEEHHHH
T ss_pred ccc--hHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCC---------CCeEEecCC--CcccHHHH
Confidence 001 112344555566665556677777 8999999999999999886532 579999998 88999999
Q ss_pred HHHHHHhhccc
Q psy16252 402 ITKSLKEGVKI 412 (545)
Q Consensus 402 ~~~l~~~~~~~ 412 (545)
++.+.+.+|..
T Consensus 294 ~~~i~~~~g~~ 304 (357)
T 2x6t_A 294 ADATLAYHKKG 304 (357)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHcCCC
Confidence 99999998764
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=240.52 Aligned_cols=260 Identities=15% Similarity=0.102 Sum_probs=180.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCC-CCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKN-QSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~-~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|+|||||||||||++|+++|++.|+ +|+++.|.... ....+.+.. .......++. |++ +.+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~Dl~------~~~ 63 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVIILDNLCNSKRSVLPVIER--------LGGKHPTFVEGDIR------NEA 63 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCTTHHHHHHH--------HHTSCCEEEECCTT------CHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEecCCCcchhHHHHHHh--------hcCCcceEEEccCC------CHH
Confidence 5799999999999999999999876 67788775332 222222211 0011233344 877 667
Q ss_pred HHHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 176 DKRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 176 ~~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
.+.++++ ++|+|||+||..... ......+++|+.|+.+++++|++. ++++|||+||.++++... +++|+...
T Consensus 64 ~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g~~~~~~~~e~~~~ 142 (338)
T 1udb_A 64 LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSATVYGDNPKIPYVESFPT 142 (338)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCCSSSBCTTSCC
T ss_pred HHHHHhhccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEccHHHhCCCCCCCcCcccCC
Confidence 7877776 599999999975432 234667899999999999999986 789999999999987532 33343211
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeeccCCCCCCCCcc
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
. ...+.|+.||+.+|++++.++ .+++++++||+++||+...+..|...
T Consensus 143 ~-----------------------------~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~ 193 (338)
T 1udb_A 143 G-----------------------------TPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDP 193 (338)
T ss_dssp C-----------------------------CCSSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCC
T ss_pred C-----------------------------CCCChHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCccccccccc
Confidence 1 112789999999999998875 37999999999999985433222111
Q ss_pred C--ccchHHHHHHHhc--CceeEEec------CCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCc
Q psy16252 326 N--LYGPTGLVTGAQA--GVVRTFLV------DPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNP 395 (545)
Q Consensus 326 ~--~~~~~~~~~~~~~--g~~~~~~~------~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~ 395 (545)
. .......+..... +....+++ +++...++|||+|+|++++.++..... ...+++||++++ ++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-----~~~~~~yni~~~--~~ 266 (338)
T 1udb_A 194 QGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLAN-----KPGVHIYNLGAG--VG 266 (338)
T ss_dssp CSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTT-----CCEEEEEEESCS--CC
T ss_pred ccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHHHHHHHHHHHHhhhhc-----cCCCcEEEecCC--Cc
Confidence 1 0112233333322 22222333 456788999999999999998865321 011379999988 88
Q ss_pred ccHHHHHHHHHHhhcc
Q psy16252 396 LTWGEFITKSLKEGVK 411 (545)
Q Consensus 396 ~t~~el~~~l~~~~~~ 411 (545)
+|+.|+++.+.+..+.
T Consensus 267 ~s~~e~~~~i~~~~g~ 282 (338)
T 1udb_A 267 NSVLDVVNAFSKACGK 282 (338)
T ss_dssp EEHHHHHHHHHHHHTS
T ss_pred eeHHHHHHHHHHHhCC
Confidence 9999999999998875
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=245.13 Aligned_cols=244 Identities=18% Similarity=0.140 Sum_probs=170.1
Q ss_pred EEEEeccccccchHHHHHHHhhC-CCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSF-PRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g-~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
+|||||||||||++|+++|++.| + .|+++.|...... ...+. ... +. |+. +.+.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~~-~~~~~-------------~~~-~~~d~~------~~~~ 56 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGIT---DILVVDNLKDGTK-FVNLV-------------DLN-IADYMD------KEDF 56 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCC---CEEEEECCSSGGG-GHHHH-------------TSC-CSEEEE------HHHH
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCc---EEEEEccCCCCch-hhhcC-------------cce-eccccc------cHHH
Confidence 48999999999999999999987 4 6888888754321 11111 111 22 665 5567
Q ss_pred HHHHhcC-----ccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 177 KRLVTSK-----VNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 177 ~~~l~~~-----vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
+..++++ +|+|||+||.... ...++..+++|+.|+.+++++|.+. ++ +|||+||.++++... +++|+..+
T Consensus 57 ~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~g~~~~~~~~E~~~~ 134 (310)
T 1eq2_A 57 LIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTSDFIESREYE 134 (310)
T ss_dssp HHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGGGGTTCCSCBCSSGGGC
T ss_pred HHHHHhccccCCCcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeHHHhCCCCCCCCCCCCCC
Confidence 7888775 9999999997653 3456778899999999999999997 77 999999999987643 34444322
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
.| .+.|+.||+.+|++++.+. .+++++++||+.|||+...+.... .
T Consensus 135 ~p------------------------------~~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~-~- 182 (310)
T 1eq2_A 135 KP------------------------------LNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSM-A- 182 (310)
T ss_dssp CC------------------------------SSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGG-S-
T ss_pred CC------------------------------CChhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCcc-c-
Confidence 22 2789999999999999876 689999999999999864321100 0
Q ss_pred ccchHHHHHHHhcCceeEEecCCCC-cccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDV-KADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKS 405 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l 405 (545)
.....++..+..|....++++++. ..+++|++|+|++++.++..+. +++||++++ +++|+.|+++.+
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~---------~~~~~i~~~--~~~s~~e~~~~i 250 (310)
T 1eq2_A 183 -SVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV---------SGIFNLGTG--RAESFQAVADAT 250 (310)
T ss_dssp -CHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC---------CEEEEESCS--CCBCHHHHHHHC
T ss_pred -hHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcCC---------CCeEEEeCC--CccCHHHHHHHH
Confidence 112344555556654445677778 8999999999999999886532 579999998 889999999999
Q ss_pred HHhhccc
Q psy16252 406 LKEGVKI 412 (545)
Q Consensus 406 ~~~~~~~ 412 (545)
.+.+|..
T Consensus 251 ~~~~g~~ 257 (310)
T 1eq2_A 251 LAYHKKG 257 (310)
T ss_dssp -------
T ss_pred HHHcCCC
Confidence 9988764
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=237.80 Aligned_cols=243 Identities=16% Similarity=0.131 Sum_probs=176.8
Q ss_pred chhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCC
Q psy16252 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAP 168 (545)
Q Consensus 90 ~~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~ 168 (545)
.....+++|+|||||||||||++|+++|++.|+ +|+++.|...... +.+.. + .+..++. |++
T Consensus 14 ~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~--~~l~~--------~--~~~~~~~~Dl~-- 76 (333)
T 2q1w_A 14 LVPRGSHMKKVFITGICGQIGSHIAELLLERGD---KVVGIDNFATGRR--EHLKD--------H--PNLTFVEGSIA-- 76 (333)
T ss_dssp -------CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCG--GGSCC--------C--TTEEEEECCTT--
T ss_pred eeeecCCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEECCCccch--hhHhh--------c--CCceEEEEeCC--
Confidence 344456789999999999999999999999875 7999999754321 10000 0 1222333 777
Q ss_pred CCCCCHHHHHHHhcC--ccEEEEccccccch--HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccccc----CCC
Q psy16252 169 DLGLSPDDKRLVTSK--VNLVFHCAATLRFD--EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNS----YRK 240 (545)
Q Consensus 169 ~lgl~~~~~~~l~~~--vd~Vih~Aa~~~~~--~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~----~~~ 240 (545)
+.+.+.+++++ +|+|||+||..... ..+. +++|+.|+.+++++|.+. ++++|||+||.++++ ...
T Consensus 77 ----d~~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~~~g~~~~~~~ 149 (333)
T 2q1w_A 77 ----DHALVNQLIGDLQPDAVVHTAASYKDPDDWYND--TLTNCVGGSNVVQAAKKN-NVGRFVYFQTALCYGVKPIQQP 149 (333)
T ss_dssp ----CHHHHHHHHHHHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGCSCCCSSS
T ss_pred ----CHHHHHHHHhccCCcEEEECceecCCCccCChH--HHHHHHHHHHHHHHHHHh-CCCEEEEECcHHHhCCCcccCC
Confidence 67788888887 99999999986542 2333 899999999999999996 789999999999987 321
Q ss_pred -cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHH-hccCCCEEEEccceeeccCCC
Q psy16252 241 -NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCE-EAQFFPVCIFRPSIVISTWKE 318 (545)
Q Consensus 241 -~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~-~~~~l~~~i~Rp~~i~g~~~~ 318 (545)
+++|+. ....+.|+.||+.+|++++. +. +++++||+.+||+...
T Consensus 150 ~~~~E~~-------------------------------~p~~~~Y~~sK~~~E~~~~~s~~---~~~ilR~~~v~gp~~~ 195 (333)
T 2q1w_A 150 VRLDHPR-------------------------------NPANSSYAISKSANEDYLEYSGL---DFVTFRLANVVGPRNV 195 (333)
T ss_dssp BCTTSCC-------------------------------CCTTCHHHHHHHHHHHHHHHHTC---CEEEEEESEEESTTCC
T ss_pred CCcCCCC-------------------------------CCCCCchHHHHHHHHHHHHhhhC---CeEEEeeceEECcCCc
Confidence 222221 01116899999999999998 65 8999999999998521
Q ss_pred CCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccH
Q psy16252 319 PIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTW 398 (545)
Q Consensus 319 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~ 398 (545)
. .....++..+..|. .+++ ++...++++++|+|++++.++.... +++||++++ .++++
T Consensus 196 --~------~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ai~~~~~~~~---------g~~~~v~~~--~~~s~ 253 (333)
T 2q1w_A 196 --S------GPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARATVRAVDGVG---------HGAYHFSSG--TDVAI 253 (333)
T ss_dssp --S------SHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHHHHHHHTTCC---------CEEEECSCS--CCEEH
T ss_pred --C------cHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHHHHHHHhcCC---------CCEEEeCCC--CCccH
Confidence 0 11233444555554 2344 6778899999999999999876432 579999998 88999
Q ss_pred HHHHHHHHHhhccc
Q psy16252 399 GEFITKSLKEGVKI 412 (545)
Q Consensus 399 ~el~~~l~~~~~~~ 412 (545)
.|+++.+.+.+|..
T Consensus 254 ~e~~~~i~~~~g~~ 267 (333)
T 2q1w_A 254 KELYDAVVEAMALP 267 (333)
T ss_dssp HHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998764
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=243.42 Aligned_cols=272 Identities=17% Similarity=0.129 Sum_probs=185.1
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcc-c-CCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSK-E-SAQAPDL 170 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~-~-Dl~~~~l 170 (545)
.++++|+|||||||||||++|+++|++.|+ +|++++|+... .+.+...+. .....+.+++ . |+++
T Consensus 7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~---~~~~~~~~~----~~~~~~~~~~~~~D~~d--- 73 (342)
T 1y1p_A 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGY---KVRGTARSASK---LANLQKRWD----AKYPGRFETAVVEDMLK--- 73 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSHHH---HHHHHHHHH----HHSTTTEEEEECSCTTS---
T ss_pred cCCCCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCccc---HHHHHHHhh----ccCCCceEEEEecCCcC---
Confidence 446789999999999999999999999875 78999986421 112211110 0001233444 4 7773
Q ss_pred CCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC------Ccccc
Q psy16252 171 GLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR------KNIEE 244 (545)
Q Consensus 171 gl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~------~~i~E 244 (545)
.+.+.++++++|+|||+||.......+...+++|+.|+.+++++|.+..++++|||+||.++++.. .+++|
T Consensus 74 ---~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E 150 (342)
T 1y1p_A 74 ---QGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDE 150 (342)
T ss_dssp ---TTTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECT
T ss_pred ---hHHHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCc
Confidence 345677778999999999987665567778999999999999999854478999999999887532 23444
Q ss_pred cccCCCCCHHHHHHhhhccCCchhHHHh-hhhh--cCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceeeccCC
Q psy16252 245 IIYKAHTHYSELLKISKLDVDDPKYQET-RERL--SHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~g~~~ 317 (545)
+.+.. ...... .+.. .....+.|+.||+.+|++++.+. .+++++++||+.|||+..
T Consensus 151 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~ 213 (342)
T 1y1p_A 151 KSWNL-----------------ESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIF 213 (342)
T ss_dssp TCCCH-----------------HHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCS
T ss_pred cccCc-----------------hhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCC
Confidence 32110 000000 0000 00011689999999999998875 378999999999999865
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCccc
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLT 397 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t 397 (545)
.+... . .....++..+..|....+.++. ...++++++|||++++.++..... .+..+ ++++ .++|
T Consensus 214 ~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~Dva~a~~~~~~~~~~-------~g~~~-~~~g--~~~s 278 (342)
T 1y1p_A 214 DPETQ---S-GSTSGWMMSLFNGEVSPALALM-PPQYYVSAVDIGLLHLGCLVLPQI-------ERRRV-YGTA--GTFD 278 (342)
T ss_dssp CTTTC---C-CHHHHHHHHHHTTCCCHHHHTC-CSEEEEEHHHHHHHHHHHHHCTTC-------CSCEE-EECC--EEEC
T ss_pred CCCCC---C-ccHHHHHHHHHcCCCccccccC-CcCCEeEHHHHHHHHHHHHcCccc-------CCceE-EEeC--CCCC
Confidence 43211 0 1223455555566543334444 677999999999999998876433 24444 4455 6899
Q ss_pred HHHHHHHHHHhhccc
Q psy16252 398 WGEFITKSLKEGVKI 412 (545)
Q Consensus 398 ~~el~~~l~~~~~~~ 412 (545)
+.|+++.+.+.++..
T Consensus 279 ~~e~~~~i~~~~~~~ 293 (342)
T 1y1p_A 279 WNTVLATFRKLYPSK 293 (342)
T ss_dssp HHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHCCCc
Confidence 999999999998764
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-27 Score=241.50 Aligned_cols=254 Identities=17% Similarity=0.058 Sum_probs=183.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh--hc-CCCccc-CCCCCCCCCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK--FT-CSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~--~~-~~~~~~-Dl~~~~lgl~ 173 (545)
|+|||||||||||++|++.|++.|+ +|++++|....... .++.... .... .. ...++. |++ +
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~---~V~~~~r~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~Dl~------d 94 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGY---EVHGLIRRSSNFNT-QRINHIY----IDPHNVNKALMKLHYADLT------D 94 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSSCCC-TTTTTTC------------CCEEEEECCTT------C
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCC---EEEEEecCCccccc-hhhhhhh----hccccccccceEEEECCCC------C
Confidence 6899999999999999999999875 78999997643110 0111100 0000 00 223333 776 6
Q ss_pred HHHHHHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCc-----eEEEEeccccccCCC-cc
Q psy16252 174 PDDKRLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLK-----MFTYVSTAFSNSYRK-NI 242 (545)
Q Consensus 174 ~~~~~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~-----~~v~vSS~~v~~~~~-~i 242 (545)
.+.+.+++++ +|+|||+||..... ..+...+++|+.|+.+++++|.+. +++ +|||+||.++++... ++
T Consensus 95 ~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~~~~~~v~~SS~~vyg~~~~~~ 173 (381)
T 1n7h_A 95 ASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH-TIDSGRTVKYYQAGSSEMFGSTPPPQ 173 (381)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHH-HHHHCCCCEEEEEEEGGGGTTSCSSB
T ss_pred HHHHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCccCCccEEEEeCcHHHhCCCCCCC
Confidence 6788888875 69999999987643 345778899999999999999986 555 999999999987643 34
Q ss_pred cccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCC
Q psy16252 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPI 320 (545)
Q Consensus 243 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~ 320 (545)
+|+....| .+.|+.||+.+|.+++.+. .+++++++|++.+||+...+
T Consensus 174 ~E~~~~~~------------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~- 222 (381)
T 1n7h_A 174 SETTPFHP------------------------------RSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGE- 222 (381)
T ss_dssp CTTSCCCC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCT-
T ss_pred CCCCCCCC------------------------------CCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCC-
Confidence 44322211 2789999999999998876 58999999999999975321
Q ss_pred CCCccCccchHHHHHHHhcCce-eEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHH
Q psy16252 321 PGWIDNLYGPTGLVTGAQAGVV-RTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWG 399 (545)
Q Consensus 321 ~g~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~ 399 (545)
++... ....++..+..|.. ...+++++...++++|+|+|++++.++..+. +++||++++ +++|+.
T Consensus 223 -~~~~~--~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~---------~~~~~i~~~--~~~s~~ 288 (381)
T 1n7h_A 223 -NFVTR--KITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEK---------PDDYVVATE--EGHTVE 288 (381)
T ss_dssp -TSHHH--HHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSS---------CCEEEECCS--CEEEHH
T ss_pred -cchhH--HHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHHHHHHHHhCCC---------CCeEEeeCC--CCCcHH
Confidence 11100 01223334444542 3345778889999999999999999986543 479999998 899999
Q ss_pred HHHHHHHHhhcc
Q psy16252 400 EFITKSLKEGVK 411 (545)
Q Consensus 400 el~~~l~~~~~~ 411 (545)
|+++.+.+.+|.
T Consensus 289 e~~~~i~~~~g~ 300 (381)
T 1n7h_A 289 EFLDVSFGYLGL 300 (381)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999876
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=240.26 Aligned_cols=243 Identities=19% Similarity=0.133 Sum_probs=181.9
Q ss_pred chhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCC
Q psy16252 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAP 168 (545)
Q Consensus 90 ~~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~ 168 (545)
+.++.+++|+|||||||||||++|+++|++.|+ +|++++|....... .+ ..+ ....++. |++
T Consensus 13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~--~~--------~~l--~~v~~~~~Dl~-- 75 (330)
T 2pzm_A 13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGH---EILVIDNFATGKRE--VL--------PPV--AGLSVIEGSVT-- 75 (330)
T ss_dssp -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTC---EEEEEECCSSSCGG--GS--------CSC--TTEEEEECCTT--
T ss_pred CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCccchh--hh--------hcc--CCceEEEeeCC--
Confidence 344557789999999999999999999999875 78999996443210 00 000 1222333 777
Q ss_pred CCCCCHHHHHHHhc--CccEEEEccccccc--hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC----
Q psy16252 169 DLGLSPDDKRLVTS--KVNLVFHCAATLRF--DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---- 240 (545)
Q Consensus 169 ~lgl~~~~~~~l~~--~vd~Vih~Aa~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---- 240 (545)
+.+.+.++++ ++|+|||+||.... ...+. +++|+.|+.+++++|.+. ++++|||+||.++++...
T Consensus 76 ----d~~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~~~~~~~~~~~ 148 (330)
T 2pzm_A 76 ----DAGLLERAFDSFKPTHVVHSAAAYKDPDDWAED--AATNVQGSINVAKAASKA-GVKRLLNFQTALCYGRPATVPI 148 (330)
T ss_dssp ----CHHHHHHHHHHHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHH-TCSEEEEEEEGGGGCSCSSSSB
T ss_pred ----CHHHHHHHHhhcCCCEEEECCccCCCccccChh--HHHHHHHHHHHHHHHHHc-CCCEEEEecCHHHhCCCccCCC
Confidence 6778888888 99999999998654 23344 899999999999999986 789999999999987542
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCC
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPI 320 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~ 320 (545)
+++|+. ...+.|+.||+.+|++++.+ +++++++||+++||+...
T Consensus 149 ~~~E~~--------------------------------~~~~~Y~~sK~~~e~~~~~~--~~~~~~iR~~~v~gp~~~-- 192 (330)
T 2pzm_A 149 PIDSPT--------------------------------APFTSYGISKTAGEAFLMMS--DVPVVSLRLANVTGPRLA-- 192 (330)
T ss_dssp CTTCCC--------------------------------CCCSHHHHHHHHHHHHHHTC--SSCEEEEEECEEECTTCC--
T ss_pred CcCCCC--------------------------------CCCChHHHHHHHHHHHHHHc--CCCEEEEeeeeeECcCCC--
Confidence 223321 11278999999999999886 899999999999997531
Q ss_pred CCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHH-HHHhcccccccccCCCCCCCCEEEeecCCCCcccHH
Q psy16252 321 PGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVN-ALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWG 399 (545)
Q Consensus 321 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~-ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~ 399 (545)
.++ ...++..+..|. ..++++. ..++++++|+|+ +++.++... . +++||++++ .++++.
T Consensus 193 ----~~~--~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~~~~~~--------~-g~~~~v~~~--~~~s~~ 252 (330)
T 2pzm_A 193 ----IGP--IPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLSLQEGR--------P-TGVFNVSTG--EGHSIK 252 (330)
T ss_dssp ----SSH--HHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHHTSTTC--------C-CEEEEESCS--CCEEHH
T ss_pred ----CCH--HHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHHHhhcC--------C-CCEEEeCCC--CCCCHH
Confidence 111 123444444554 2345556 889999999999 999987652 1 689999998 889999
Q ss_pred HHHHHHHHhhccc
Q psy16252 400 EFITKSLKEGVKI 412 (545)
Q Consensus 400 el~~~l~~~~~~~ 412 (545)
|+++.+.+.+|..
T Consensus 253 e~~~~i~~~~g~~ 265 (330)
T 2pzm_A 253 EVFDVVLDYVGAT 265 (330)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998875
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=244.42 Aligned_cols=258 Identities=17% Similarity=0.050 Sum_probs=186.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.|+ +|++++|...... .+++....... .........++. |++ +.+.
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~-~~~~~~l~~~~-~~~~~~~~~~~~~Dl~------d~~~ 93 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGY---EVHGIVRRSSSFN-TGRIEHLYKNP-QAHIEGNMKLHYGDLT------DSTC 93 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSSCC-CTTTGGGC----------CEEEEECCTT------CHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCccccc-hhhHHHHhhhh-ccccCCCceEEEccCC------CHHH
Confidence 6899999999999999999999875 7899999754311 01111100000 000011233334 777 6678
Q ss_pred HHHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCC---ceEEEEeccccccCCC--cccccc
Q psy16252 177 KRLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNL---KMFTYVSTAFSNSYRK--NIEEII 246 (545)
Q Consensus 177 ~~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~---~~~v~vSS~~v~~~~~--~i~E~~ 246 (545)
+.+++++ +|+|||+||..... ..++..+++|+.|+.+++++|.+. ++ ++|||+||.++++... +++|+.
T Consensus 94 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~~~~iv~~SS~~~~~~~~~~~~~E~~ 172 (375)
T 1t2a_A 94 LVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC-GLINSVKFYQASTSELYGKVQEIPQKETT 172 (375)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGGGTCSCSSSSBCTTS
T ss_pred HHHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEecchhhhCCCCCCCCCccC
Confidence 8888875 69999999986543 345678899999999999999986 66 7999999999987643 444443
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCc
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
...| .+.|+.||+.+|.+++.++ .+++++++||+.+||+...+ ++.
T Consensus 173 ~~~~------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~--~~~ 220 (375)
T 1t2a_A 173 PFYP------------------------------RSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGA--NFV 220 (375)
T ss_dssp CCCC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCT--TSH
T ss_pred CCCC------------------------------CChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCC--Ccc
Confidence 2222 2689999999999998876 58999999999999985431 111
Q ss_pred cCccchHHHHHHHhcCce-eEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHH
Q psy16252 325 DNLYGPTGLVTGAQAGVV-RTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFIT 403 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~ 403 (545)
.. ....++..+..|.. ...+++++...++++|+|+|++++.++..+. +++||++++ +++|+.|+++
T Consensus 221 ~~--~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~---------~~~~ni~~~--~~~s~~e~~~ 287 (375)
T 1t2a_A 221 TR--KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDE---------PEDFVIATG--EVHSVREFVE 287 (375)
T ss_dssp HH--HHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSS---------CCCEEECCS--CCEEHHHHHH
T ss_pred hH--HHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHHHHHHHhcCC---------CceEEEeCC--CcccHHHHHH
Confidence 10 11233444445543 3356788899999999999999999987543 379999998 8899999999
Q ss_pred HHHHhhccc
Q psy16252 404 KSLKEGVKI 412 (545)
Q Consensus 404 ~l~~~~~~~ 412 (545)
.+.+.+|..
T Consensus 288 ~i~~~~g~~ 296 (375)
T 1t2a_A 288 KSFLHIGKT 296 (375)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHhCCC
Confidence 999998763
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=243.21 Aligned_cols=239 Identities=17% Similarity=0.165 Sum_probs=180.6
Q ss_pred CCchhhhhcCcEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CC
Q psy16252 88 PPSLDDFYEGAEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SA 165 (545)
Q Consensus 88 ~~~~~~~~~~~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl 165 (545)
.+++.+++++|+|||||||||||++|+++|++. |+ .+|+++.|+.. +.... ...+......++. |+
T Consensus 12 ~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~--~~V~~~~r~~~------~~~~~----~~~~~~~~v~~~~~Dl 79 (344)
T 2gn4_A 12 MPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNA--KKIIVYSRDEL------KQSEM----AMEFNDPRMRFFIGDV 79 (344)
T ss_dssp ----CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCC--SEEEEEESCHH------HHHHH----HHHHCCTTEEEEECCT
T ss_pred CccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCC--CEEEEEECChh------hHHHH----HHHhcCCCEEEEECCC
Confidence 556777889999999999999999999999998 64 37889998632 11111 1111122334444 88
Q ss_pred CCCCCCCCHHHHHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcc
Q psy16252 166 QAPDLGLSPDDKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNI 242 (545)
Q Consensus 166 ~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i 242 (545)
+ +.+.+..+++++|+|||+||.... ...+...+++|+.|+.+++++|.+. ++++||++||..++.+
T Consensus 80 ~------d~~~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~-~v~~~V~~SS~~~~~p---- 148 (344)
T 2gn4_A 80 R------DLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKN-AISQVIALSTDKAANP---- 148 (344)
T ss_dssp T------CHHHHHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGGGSSC----
T ss_pred C------CHHHHHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCCccCCC----
Confidence 7 678899999999999999997652 2334678899999999999999997 7999999999765421
Q ss_pred cccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCC
Q psy16252 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 243 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~ 317 (545)
.+.|+.||+.+|.++..+. .+++++++|||+|+|+..
T Consensus 149 --------------------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~ 190 (344)
T 2gn4_A 149 --------------------------------------INLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG 190 (344)
T ss_dssp --------------------------------------CSHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT
T ss_pred --------------------------------------ccHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC
Confidence 1689999999999999875 479999999999999742
Q ss_pred CCCCCCccCccchHHHHHHHhcCc-eeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcc
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGV-VRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPL 396 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~ 396 (545)
. ....+...+..|. ...+ .+++...++++++|+|++++.++..... +++|++.++ ++
T Consensus 191 ~----------~i~~~~~~~~~g~~~~~i-~~~~~~r~~i~v~D~a~~v~~~l~~~~~--------g~~~~~~~~---~~ 248 (344)
T 2gn4_A 191 S----------VVPFFKKLVQNKASEIPI-TDIRMTRFWITLDEGVSFVLKSLKRMHG--------GEIFVPKIP---SM 248 (344)
T ss_dssp S----------HHHHHHHHHHHTCCCEEE-SCTTCEEEEECHHHHHHHHHHHHHHCCS--------SCEEEECCC---EE
T ss_pred C----------HHHHHHHHHHcCCCceEE-eCCCeEEeeEEHHHHHHHHHHHHhhccC--------CCEEecCCC---cE
Confidence 2 1123444445565 2223 4677888999999999999999876543 689998775 69
Q ss_pred cHHHHHHHHHHhh
Q psy16252 397 TWGEFITKSLKEG 409 (545)
Q Consensus 397 t~~el~~~l~~~~ 409 (545)
++.|+++.+.+..
T Consensus 249 s~~el~~~i~~~~ 261 (344)
T 2gn4_A 249 KMTDLAKALAPNT 261 (344)
T ss_dssp EHHHHHHHHCTTC
T ss_pred EHHHHHHHHHHhC
Confidence 9999999998654
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=261.44 Aligned_cols=268 Identities=15% Similarity=0.096 Sum_probs=190.5
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL 170 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l 170 (545)
...++|+|||||||||||++|+++|++. |+ +|++++|+..... ++ ....+.+++. |++++
T Consensus 311 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~g~---~V~~~~r~~~~~~---~~----------~~~~~v~~v~~Dl~d~-- 372 (660)
T 1z7e_A 311 TARRRTRVLILGVNGFIGNHLTERLLREDHY---EVYGLDIGSDAIS---RF----------LNHPHFHFVEGDISIH-- 372 (660)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHHHSSSE---EEEEEESCCTTTG---GG----------TTCTTEEEEECCTTTC--
T ss_pred hhccCceEEEEcCCcHHHHHHHHHHHhcCCC---EEEEEEcCchhhh---hh----------ccCCceEEEECCCCCc--
Confidence 3456899999999999999999999997 44 7999999764321 00 0011223333 77632
Q ss_pred CCCHHHHHHHhcCccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--ccccc
Q psy16252 171 GLSPDDKRLVTSKVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEI 245 (545)
Q Consensus 171 gl~~~~~~~l~~~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~ 245 (545)
.+.+..+++++|+|||+||.... ..++...+++|+.|+.+++++|.+. + ++|||+||.++++... .++|+
T Consensus 373 ---~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~-~r~V~~SS~~vyg~~~~~~~~E~ 447 (660)
T 1z7e_A 373 ---SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSEVYGMCSDKYFDED 447 (660)
T ss_dssp ---HHHHHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGGGGBTCCSSSBCTT
T ss_pred ---HHHHHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHh-C-CEEEEEecHHHcCCCCCcccCCC
Confidence 23467778899999999997653 3456778899999999999999997 5 8999999999987643 34443
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
....+. .+ .....+.|+.||+.+|++++.++ .+++++++|||.|||+...+..++
T Consensus 448 ~~~~~~---------------------~p--~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~ 504 (660)
T 1z7e_A 448 HSNLIV---------------------GP--VNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAA 504 (660)
T ss_dssp TCCEEE---------------------CC--TTCTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHH
T ss_pred cccccc---------------------Cc--ccCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccc
Confidence 211000 00 00112689999999999998875 689999999999999865321000
Q ss_pred ccC-ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCC-cccHHHH
Q psy16252 324 IDN-LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDN-PLTWGEF 401 (545)
Q Consensus 324 ~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~-~~t~~el 401 (545)
..+ ......++..+..|....++++++...++++++|+|++++.++..... ...+++||++++ + ++|+.|+
T Consensus 505 ~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~-----~~~g~~~ni~~~--~~~~s~~el 577 (660)
T 1z7e_A 505 RIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGN-----RCDGEIINIGNP--ENEASIEEL 577 (660)
T ss_dssp TTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHHHHHHCGGG-----TTTTEEEEECCG--GGEEEHHHH
T ss_pred cccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHHHHHhCccc-----cCCCeEEEECCC--CCCcCHHHH
Confidence 000 011234555566676655677888999999999999999999876541 013689999987 6 7999999
Q ss_pred HHHHHHhhcccC
Q psy16252 402 ITKSLKEGVKIP 413 (545)
Q Consensus 402 ~~~l~~~~~~~~ 413 (545)
++.+.+.+|..+
T Consensus 578 ~~~i~~~~g~~~ 589 (660)
T 1z7e_A 578 GEMLLASFEKHP 589 (660)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHhcCCC
Confidence 999999988643
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=255.94 Aligned_cols=267 Identities=17% Similarity=0.081 Sum_probs=186.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCH-HHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP-QQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+++|+|||||||||||++|+++|++.|+ +|+++.|....... .+++.. +....+.++. |++
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~l~~--------~~~~~v~~v~~Dl~------ 71 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENGY---DCVVADNLSNSTYDSVARLEV--------LTKHHIPFYEVDLC------ 71 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCTHHHHHHHH--------HHTSCCCEEECCTT------
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCCcchHHHHHHHhh--------ccCCceEEEEcCCC------
Confidence 5679999999999999999999999875 78899987543321 111111 1122344455 887
Q ss_pred CHHHHHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC------c
Q psy16252 173 SPDDKRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK------N 241 (545)
Q Consensus 173 ~~~~~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~------~ 241 (545)
+.+.+.++++ ++|+|||+||..... ......+++|+.|+.+++++|++. ++++|||+||.++++... +
T Consensus 72 d~~~l~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~iV~~SS~~vyg~~~~~~~~~~ 150 (699)
T 1z45_A 72 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSATVYGDATRFPNMIP 150 (699)
T ss_dssp CHHHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCCGGGSTTCCS
T ss_pred CHHHHHHHHHhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECcHHHhCCCccccccCC
Confidence 6678888887 899999999986532 234567899999999999999987 789999999999987532 2
Q ss_pred ccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceeeccCC
Q psy16252 242 IEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 242 i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~g~~~ 317 (545)
+.|..... ..+.|+.||+.+|++++.++ .+++++|+||+.|||+..
T Consensus 151 ~~E~~~~~------------------------------p~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~ 200 (699)
T 1z45_A 151 IPEECPLG------------------------------PTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHP 200 (699)
T ss_dssp BCTTSCCC------------------------------CCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCT
T ss_pred ccccCCCC------------------------------CCChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCc
Confidence 33322111 12789999999999998864 489999999999999864
Q ss_pred CCCCCCccC--ccchHHHHHHHhcC--ceeEEec------CCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 318 EPIPGWIDN--LYGPTGLVTGAQAG--VVRTFLV------DPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 318 ~~~~g~~~~--~~~~~~~~~~~~~g--~~~~~~~------~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
..+.|-... ......++.....+ ....+++ +++..+++|||+|||++++.++...... ......+++||
T Consensus 201 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~-~~~~~~~~~yn 279 (699)
T 1z45_A 201 SGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAY-NENEGLCREWN 279 (699)
T ss_dssp TSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHS-CTTCCEEEEEE
T ss_pred ccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCCCeeEeeEEHHHHHHHHHHHHhhhhcc-ccccCCceEEE
Confidence 332221100 01122333443332 2222333 5678899999999999999988643100 00001247999
Q ss_pred eecCCCCcccHHHHHHHHHHhhccc
Q psy16252 388 YVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 388 i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
++++ +++|+.|+++.+.+.++..
T Consensus 280 i~~~--~~~s~~el~~~i~~~~g~~ 302 (699)
T 1z45_A 280 LGSG--KGSTVFEVYHAFCKASGID 302 (699)
T ss_dssp ESCS--CCEEHHHHHHHHHHHHTCC
T ss_pred ECCC--CCCcHHHHHHHHHHHhCCC
Confidence 9998 8899999999999998764
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-29 Score=253.40 Aligned_cols=281 Identities=19% Similarity=0.116 Sum_probs=203.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|||||||||||++|+++|+++|+ .+|+++.|. .+.+.+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~--~~v~~~d~~--------------------------------------~d~~~l 40 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTD--HHIFEVHRQ--------------------------------------TKEEEL 40 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC--CEEEECCTT--------------------------------------CCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--CEEEEECCC--------------------------------------CCHHHH
Confidence 5899999999999999999999975 257776552 156778
Q ss_pred HHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCc-eEEEEeccccccCCCcccccccCCCCCHHHH
Q psy16252 178 RLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLK-MFTYVSTAFSNSYRKNIEEIIYKAHTHYSEL 256 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~-~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~ 256 (545)
.++++++|+|||+||..... ....++++|+.++.+++++|++. +++ +|||+||.++++.
T Consensus 41 ~~~~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~Ss~~~~~~------------------ 100 (369)
T 3st7_A 41 ESALLKADFIVHLAGVNRPE-HDKEFSLGNVSYLDHVLDILTRN-TKKPAILLSSSIQATQD------------------ 100 (369)
T ss_dssp HHHHHHCSEEEECCCSBCTT-CSTTCSSSCCBHHHHHHHHHTTC-SSCCEEEEEEEGGGGSC------------------
T ss_pred HHHhccCCEEEECCcCCCCC-CHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeCchhhcCC------------------
Confidence 88888999999999987643 34556789999999999999987 666 9999999998751
Q ss_pred HHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCccchHHHH
Q psy16252 257 LKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLV 334 (545)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~ 334 (545)
+.|+.||+.+|+++++++ .+++++|+||+.|||++..+.. . .....++
T Consensus 101 -------------------------~~Y~~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~---~--~~~~~~~ 150 (369)
T 3st7_A 101 -------------------------NPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNY---N--SVIATFC 150 (369)
T ss_dssp -------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTS---S--CHHHHHH
T ss_pred -------------------------CCchHHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCCc---c--hHHHHHH
Confidence 789999999999999876 6899999999999998765421 1 1123444
Q ss_pred HHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhcccCC
Q psy16252 335 TGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIPS 414 (545)
Q Consensus 335 ~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~~~ 414 (545)
..+..|.... ..+++...++++++|+|++++.++..+.. ..+++||++++ +++|+.|+++.+.+..|....
T Consensus 151 ~~~~~~~~~~-~~~~~~~~~~i~v~Dva~~~~~~l~~~~~------~~~~~~~i~~~--~~~s~~e~~~~~~~~~g~~~~ 221 (369)
T 3st7_A 151 YKIARNEEIQ-VNDRNVELTLNYVDDIVAEIKRAIEGTPT------IENGVPTVPNV--FKVTLGEIVDLLYKFKQSRLD 221 (369)
T ss_dssp HHHHTTCCCC-CSCTTCEEEEEEHHHHHHHHHHHHHTCCC------EETTEECCSCC--EEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCeE-ecCCCeEEEEEEHHHHHHHHHHHHhCCcc------cCCceEEeCCC--CceeHHHHHHHHHHHhCCCcc
Confidence 5555555433 35788999999999999999999987654 12689999998 899999999999999776421
Q ss_pred CCCCCCccccCcceeecCcchhh-hHHHHHhHHHHhhhhccC------CC-CchhHH----HhhhccccccccCeeEeec
Q psy16252 415 SQTRTNLLQDGQGSVRSRTIQYP-GVGVGQLQRAVHVDPSTR------GG-PGSISV----QYSGPRLGRLSAREWEWDN 482 (545)
Q Consensus 415 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~p~~~~d~~~~------G~-~~~~~~----~~~~~~~~~f~~~~~~f~~ 482 (545)
. ..|.. ...+... ...+..+.|...++..+. |. ..+.+. ........++....|.|..
T Consensus 222 ~-------~~~~~---~~~~~~~l~~~~l~~~p~~~~~~~l~~~~D~rg~f~e~~~~~~~~q~~ls~~~~g~~rg~h~h~ 291 (369)
T 3st7_A 222 R-------TLPKL---DNLFEKDLYSTYLSYLPSTDFSYPLLMNVDDRGSFTEFIKTPDRGQVSVNISKPGITKGNHWHH 291 (369)
T ss_dssp T-------CCCCT---TSHHHHHHHHHHHHTSCTTCSCCCCCEEEETTEEEEEEEECSSSCEEEEEEECTTCEEEEEECS
T ss_pred c-------ccCCC---CCHHHHHHHHHHhcccCCcceeechhhccCCCcceeEEEecCCCceEEEEEecCCceecccccc
Confidence 1 11111 0111222 334455666655444333 11 222221 2334456777888898888
Q ss_pred chHHH
Q psy16252 483 SNVQS 487 (545)
Q Consensus 483 ~~~~~ 487 (545)
.+.+.
T Consensus 292 ~~~e~ 296 (369)
T 3st7_A 292 TKNEK 296 (369)
T ss_dssp SCCEE
T ss_pred CcceE
Confidence 76443
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=238.35 Aligned_cols=238 Identities=16% Similarity=0.134 Sum_probs=157.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
+|+|||||||||||++|+++|++.|+ +|++++|+.... + .... |++ +.+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~----~---~~~~--------------Dl~------d~~~ 51 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNW---HAVGCGFRRARP----K---FEQV--------------NLL------DSNA 51 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEC---------------------------------------------
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC---eEEEEccCCCCC----C---eEEe--------------cCC------CHHH
Confidence 58999999999999999999999875 789998864320 0 1000 776 3445
Q ss_pred HHHHhc--CccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-cccccccCCC
Q psy16252 177 KRLVTS--KVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-NIEEIIYKAH 250 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-~i~E~~~~~~ 250 (545)
+.++++ ++|+|||+||.... ...++..+++|+.|+.+++++|.+. ++ +|||+||.++++... +++|+..+.|
T Consensus 52 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~~~~~~~~~E~~~~~~ 129 (315)
T 2ydy_A 52 VHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV-GA-FLIYISSDYVFDGTNPPYREEDIPAP 129 (315)
T ss_dssp CHHHHHHHCCSEEEECC-------------------CHHHHHHHHHHHHH-TC-EEEEEEEGGGSCSSSCSBCTTSCCCC
T ss_pred HHHHHHhhCCCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchHHHcCCCCCCCCCCCCCCC
Confidence 666666 48999999997653 2456778899999999999999987 55 999999999987632 4455432222
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
.+.|+.||+.+|++++.+ +++++++||+.|||+...+..++.
T Consensus 130 ------------------------------~~~Y~~sK~~~e~~~~~~--~~~~~~lR~~~v~G~~~~~~~~~~------ 171 (315)
T 2ydy_A 130 ------------------------------LNLYGKTKLDGEKAVLEN--NLGAAVLRIPILYGEVEKLEESAV------ 171 (315)
T ss_dssp ------------------------------CSHHHHHHHHHHHHHHHH--CTTCEEEEECSEECSCSSGGGSTT------
T ss_pred ------------------------------cCHHHHHHHHHHHHHHHh--CCCeEEEeeeeeeCCCCcccccHH------
Confidence 278999999999999986 478899999999998654211111
Q ss_pred HHHHHHHh-cCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhh
Q psy16252 331 TGLVTGAQ-AGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEG 409 (545)
Q Consensus 331 ~~~~~~~~-~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~ 409 (545)
..++..+. .|....+ .++...++++++|+|++++.++..... ....+++||++++ +++|+.|+++.+.+.+
T Consensus 172 ~~~~~~~~~~~~~~~~--~~~~~~~~i~v~Dva~a~~~~~~~~~~----~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~ 243 (315)
T 2ydy_A 172 TVMFDKVQFSNKSANM--DHWQQRFPTHVKDVATVCRQLAEKRML----DPSIKGTFHWSGN--EQMTKYEMACAIADAF 243 (315)
T ss_dssp GGGHHHHHCCSSCEEE--ECSSBBCCEEHHHHHHHHHHHHHHHHT----CTTCCEEEECCCS--CCBCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCeee--ccCceECcEEHHHHHHHHHHHHHhhcc----ccCCCCeEEEcCC--CcccHHHHHHHHHHHh
Confidence 12333333 4443333 246788999999999999998875410 0013689999998 8999999999999998
Q ss_pred ccc
Q psy16252 410 VKI 412 (545)
Q Consensus 410 ~~~ 412 (545)
|..
T Consensus 244 g~~ 246 (315)
T 2ydy_A 244 NLP 246 (315)
T ss_dssp TCC
T ss_pred CCC
Confidence 764
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=240.40 Aligned_cols=258 Identities=14% Similarity=0.033 Sum_probs=182.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|||||||||||++|+++|++.|+ +|+++.|+..... .+++........ .......++. |++ +.+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Dl~------d~~ 68 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGY---EVHGIKRRASSFN-TERVDHIYQDPH--TCNPKFHLHYGDLS------DTS 68 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECC------------------------CCEEECCCCSS------CHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCCcccc-hHHHHHHhhccc--cCCCceEEEECCCC------CHH
Confidence 37899999999999999999999875 7899998754311 112211110000 0011233344 777 667
Q ss_pred HHHHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCC---ceEEEEeccccccCCC--ccccc
Q psy16252 176 DKRLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNL---KMFTYVSTAFSNSYRK--NIEEI 245 (545)
Q Consensus 176 ~~~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~---~~~v~vSS~~v~~~~~--~i~E~ 245 (545)
.+.+++++ +|+|||+||..... +.+...+++|+.|+.+++++|.+. ++ ++|||+||.++++... +++|+
T Consensus 69 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~~iv~~SS~~v~g~~~~~~~~E~ 147 (372)
T 1db3_A 69 NLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL-GLEKKTRFYQASTSELYGLVQEIPQKET 147 (372)
T ss_dssp HHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGGGGTTCCSSSBCTT
T ss_pred HHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCCCcEEEEeCChhhhCCCCCCCCCcc
Confidence 88888875 69999999976432 345677899999999999999986 66 7999999999987643 34444
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
....| .+.|+.||+.+|.+++.++ .+++++++||+.+||+...+ ++
T Consensus 148 ~~~~~------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~--~~ 195 (372)
T 1db3_A 148 TPFYP------------------------------RSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGE--TF 195 (372)
T ss_dssp SCCCC------------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCT--TS
T ss_pred CCCCC------------------------------CChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCC--cc
Confidence 32222 2789999999999998876 58999999999999985432 11
Q ss_pred ccCccchHHHHHHHhcCce-eEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHH
Q psy16252 324 IDNLYGPTGLVTGAQAGVV-RTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFI 402 (545)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~ 402 (545)
... ....++..+..|.. ...+++++...+++||+|+|++++.++..+. +++||++++ +++|+.|++
T Consensus 196 ~~~--~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~---------~~~~ni~~~--~~~s~~e~~ 262 (372)
T 1db3_A 196 VTR--KITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQ---------PEDFVIATG--VQYSVRQFV 262 (372)
T ss_dssp HHH--HHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSSS---------CCCEEECCC--CCEEHHHHH
T ss_pred hhh--HHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHHHHHHHhcCC---------CceEEEcCC--CceeHHHHH
Confidence 110 11234444555653 3356788899999999999999999886542 479999998 889999999
Q ss_pred HHHHHhhccc
Q psy16252 403 TKSLKEGVKI 412 (545)
Q Consensus 403 ~~l~~~~~~~ 412 (545)
+.+.+.+|..
T Consensus 263 ~~i~~~~g~~ 272 (372)
T 1db3_A 263 EMAAAQLGIK 272 (372)
T ss_dssp HHHHHTTTEE
T ss_pred HHHHHHhCCC
Confidence 9999998763
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=250.56 Aligned_cols=232 Identities=14% Similarity=0.081 Sum_probs=170.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|||||||||||++|++.|++.|+ +|++++|+..... .+. |+.+.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~---~V~~l~R~~~~~~----------------------~v~~d~~~~------- 194 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH---EVIQLVRKEPKPG----------------------KRFWDPLNP------- 194 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSSCCTT----------------------CEECCTTSC-------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCCcc----------------------ceeecccch-------
Confidence 68999999999999999999999876 7999999865421 011 55421
Q ss_pred HHHHHhcCccEEEEccccccc----hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC-CC--cccccccC
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF----DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY-RK--NIEEIIYK 248 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~-~~--~i~E~~~~ 248 (545)
+..+++++|+|||+||.... ......++++|+.|+.++++++.+..++++|||+||+++|+. .. ++.|....
T Consensus 195 -~~~~l~~~D~Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~ 273 (516)
T 3oh8_A 195 -ASDLLDGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESES 273 (516)
T ss_dssp -CTTTTTTCSEEEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSCC
T ss_pred -hHHhcCCCCEEEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCCC
Confidence 23455789999999997632 345677889999999999999544458999999999999983 21 34444221
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCCCCCCCCccCc
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWKEPIPGWIDNL 327 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~~~~~g~~~~~ 327 (545)
+ .+.|+.+|..+|.++..+. .+++++|+|||.|||+... +
T Consensus 274 -~------------------------------~~~y~~~~~~~E~~~~~~~~~gi~~~ilRp~~v~Gp~~~--------~ 314 (516)
T 3oh8_A 274 -G------------------------------DDFLAEVCRDWEHATAPASDAGKRVAFIRTGVALSGRGG--------M 314 (516)
T ss_dssp -C------------------------------SSHHHHHHHHHHHTTHHHHHTTCEEEEEEECEEEBTTBS--------H
T ss_pred -C------------------------------cChHHHHHHHHHHHHHHHHhCCCCEEEEEeeEEECCCCC--------h
Confidence 1 2679999999998877665 7999999999999997421 1
Q ss_pred cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHH
Q psy16252 328 YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLK 407 (545)
Q Consensus 328 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~ 407 (545)
...+...+..|.. ..+++++...++|+++|+|++++.++.++.. .++||++++ +++|+.|+++.+.+
T Consensus 315 --~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~--------~g~~ni~~~--~~~s~~el~~~i~~ 381 (516)
T 3oh8_A 315 --LPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIVDAQI--------SGPINAVAP--NPVSNADMTKILAT 381 (516)
T ss_dssp --HHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHHCTTC--------CEEEEESCS--CCEEHHHHHHHTTC
T ss_pred --HHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHhCccc--------CCcEEEECC--CCCCHHHHHHHHHH
Confidence 1222222233333 2567888999999999999999999987654 569999998 89999999999999
Q ss_pred hhcccC
Q psy16252 408 EGVKIP 413 (545)
Q Consensus 408 ~~~~~~ 413 (545)
.+|..+
T Consensus 382 ~~g~~~ 387 (516)
T 3oh8_A 382 SMHRPA 387 (516)
T ss_dssp ------
T ss_pred HhCCCC
Confidence 888643
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=236.60 Aligned_cols=256 Identities=17% Similarity=0.180 Sum_probs=185.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCC----cCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPR----VKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPD 169 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~----v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~ 169 (545)
+++|+|||||||||||++|+++|++.|+. +.+|+++.|........ ......++. |++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~--------------~~~~~~~~~~Dl~--- 74 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAG--------------FSGAVDARAADLS--- 74 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTT--------------CCSEEEEEECCTT---
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccc--------------cCCceeEEEcCCC---
Confidence 56899999999999999999999998620 13789999975432110 001122333 777
Q ss_pred CCCCHHHHHHHh-cCccEEEEccccccc--hHHHHHHHHHhHHHHHHHHHHHHHcc----CCceEEEEeccccccCC--C
Q psy16252 170 LGLSPDDKRLVT-SKVNLVFHCAATLRF--DEELKEAIRTNMCATQTMLDLAKQCK----NLKMFTYVSTAFSNSYR--K 240 (545)
Q Consensus 170 lgl~~~~~~~l~-~~vd~Vih~Aa~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~~~----~~~~~v~vSS~~v~~~~--~ 240 (545)
+.+.+..++ .++|+|||+||.... .+.+...+++|+.||.+++++|.+.+ ++++|||+||.++++.. .
T Consensus 75 ---d~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~ 151 (342)
T 2hrz_A 75 ---APGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPY 151 (342)
T ss_dssp ---STTHHHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCS
T ss_pred ---CHHHHHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCC
Confidence 445677777 489999999997642 24567788999999999999999863 27899999999998764 2
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCC
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKE 318 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~ 318 (545)
+++|+..+.| .+.|+.||+.+|++++++. .+++.+++|++.|+|.
T Consensus 152 ~~~E~~~~~~------------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~--- 198 (342)
T 2hrz_A 152 PIPDEFHTTP------------------------------LTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIR--- 198 (342)
T ss_dssp SBCTTCCCCC------------------------------SSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTC---
T ss_pred CcCCCCCCCC------------------------------cchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEec---
Confidence 4455432222 2789999999999998876 5789999999999983
Q ss_pred CCCCCccCcc--chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcc
Q psy16252 319 PIPGWIDNLY--GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPL 396 (545)
Q Consensus 319 ~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~ 396 (545)
|++..... ....++.....|....++.+++...++++++|+|++++.++..+.. ....+++||++ + .++
T Consensus 199 --pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~~~----~~~~~~~~ni~-g--~~~ 269 (342)
T 2hrz_A 199 --PGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVE----KVGPRRNLSMP-G--LSA 269 (342)
T ss_dssp --CSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEECHHHHHHHHHHHHHSCHH----HHCSCCEEECC-C--EEE
T ss_pred --CCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEehHHHHHHHHHHHhcccc----ccCCccEEEcC-C--CCC
Confidence 12211111 1234455555666555566667788899999999999998876431 00126799995 4 579
Q ss_pred cHHHHHHHHHHhhccc
Q psy16252 397 TWGEFITKSLKEGVKI 412 (545)
Q Consensus 397 t~~el~~~l~~~~~~~ 412 (545)
|+.|+++.+.+.++..
T Consensus 270 s~~e~~~~i~~~~g~~ 285 (342)
T 2hrz_A 270 TVGEQIEALRKVAGEK 285 (342)
T ss_dssp EHHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHcCcc
Confidence 9999999999998764
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=231.50 Aligned_cols=258 Identities=17% Similarity=0.151 Sum_probs=164.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEec-CCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR-AKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R-~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
+|+|||||||||||++|+++|++.|+ +|++++| +.........+..... ......++. |++ +.
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~------d~ 65 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGY---SVNTTIRADPERKRDVSFLTNLPG------ASEKLHFFNADLS------NP 65 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEECCCC----CCCHHHHTSTT------HHHHEEECCCCTT------CG
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCC---EEEEEEeCCccchhHHHHHHhhhc------cCCceEEEecCCC------CH
Confidence 58899999999999999999999876 6888888 4321111111111000 001122333 777 56
Q ss_pred HHHHHHhcCccEEEEccccccchH--HHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC----CcccccccC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDE--ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR----KNIEEIIYK 248 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~--~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~----~~i~E~~~~ 248 (545)
+.+..+++++|+|||+|+.+.+.. +.+.++++|+.||.+++++|.+..++++|||+||.+++... ..++|....
T Consensus 66 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~ 145 (322)
T 2p4h_X 66 DSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWS 145 (322)
T ss_dssp GGGHHHHTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCC
T ss_pred HHHHHHHcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCcccc
Confidence 778889999999999998764322 23458899999999999999886468999999999754321 123332110
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
+.+...+..| ....|+.||+.+|+++.++. .+++++++||+.|||+...+.
T Consensus 146 ----------------~~~~~~~~~p-----~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~------ 198 (322)
T 2p4h_X 146 ----------------DVDLLRSVKP-----FGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPK------ 198 (322)
T ss_dssp ----------------CHHHHHHHCC-----TTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSS------
T ss_pred ----------------chhhhcccCc-----ccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCC------
Confidence 0000000000 01269999999999998875 689999999999999854321
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
.......+.....|....+ +. ...++++++|||++++.++..+.. .+.|| +++ .++|+.|+++.+.
T Consensus 199 ~~~~~~~~~~~~~g~~~~~-~~--~~~~~i~v~Dva~a~~~~~~~~~~--------~g~~~-~~~--~~~s~~e~~~~i~ 264 (322)
T 2p4h_X 199 LPDSIEKALVLVLGKKEQI-GV--TRFHMVHVDDVARAHIYLLENSVP--------GGRYN-CSP--FIVPIEEMSQLLS 264 (322)
T ss_dssp CCHHHHHHTHHHHSCGGGC-CE--EEEEEEEHHHHHHHHHHHHHSCCC--------CEEEE-CCC--EEEEHHHHHHHHH
T ss_pred CCchHHHHHHHHhCCCccC-cC--CCcCEEEHHHHHHHHHHHhhCcCC--------CCCEE-EcC--CCCCHHHHHHHHH
Confidence 1111111111223322211 11 344899999999999998865432 34598 455 6899999999998
Q ss_pred Hhhc
Q psy16252 407 KEGV 410 (545)
Q Consensus 407 ~~~~ 410 (545)
+..+
T Consensus 265 ~~~~ 268 (322)
T 2p4h_X 265 AKYP 268 (322)
T ss_dssp HHCT
T ss_pred HhCC
Confidence 7653
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=224.11 Aligned_cols=220 Identities=15% Similarity=0.042 Sum_probs=159.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|||||||||||++|+++|++.|+ +|+++.|+....... ....+++. |+. +.+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~---------------~~~~~~~~~Dl~------d~~ 59 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGF---EVTAVVRHPEKIKIE---------------NEHLKVKKADVS------SLD 59 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTC---EEEEECSCGGGCCCC---------------CTTEEEECCCTT------CHH
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEEcCcccchhc---------------cCceEEEEecCC------CHH
Confidence 37899999999999999999999875 799999985432110 01223333 776 778
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-cccccccCCCCCHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-NIEEIIYKAHTHYS 254 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-~i~E~~~~~~~~~~ 254 (545)
++.++++++|+|||+|+.... ....+++|+.++.+++++|++. ++++|||+||.+++.... ...|+....
T Consensus 60 ~~~~~~~~~d~vi~~a~~~~~---~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~----- 130 (227)
T 3dhn_A 60 EVCEVCKGADAVISAFNPGWN---NPDIYDETIKVYLTIIDGVKKA-GVNRFLMVGGAGSLFIAPGLRLMDSGEV----- 130 (227)
T ss_dssp HHHHHHTTCSEEEECCCC---------CCSHHHHHHHHHHHHHHHT-TCSEEEEECCSTTSEEETTEEGGGTTCS-----
T ss_pred HHHHHhcCCCEEEEeCcCCCC---ChhHHHHHHHHHHHHHHHHHHh-CCCEEEEeCChhhccCCCCCccccCCcc-----
Confidence 999999999999999987521 2236788999999999999997 789999999998765432 111211111
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCccchHH
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTG 332 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~ 332 (545)
..+.|+.+|+.+|.+++.+. .+++++++||+.|||+.... + ...
T Consensus 131 -------------------------p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~--~----~~~--- 176 (227)
T 3dhn_A 131 -------------------------PENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRT--G----RYR--- 176 (227)
T ss_dssp -------------------------CGGGHHHHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCC--C----CCE---
T ss_pred -------------------------hHHHHHHHHHHHHHHHHHHhhccCccEEEEeCCcccCCCccc--c----cee---
Confidence 11689999999998888776 78999999999999985432 1 110
Q ss_pred HHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHH
Q psy16252 333 LVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGE 400 (545)
Q Consensus 333 ~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~e 400 (545)
..+... +. .++ ..++++++|||++++.++.++.. .+++|+++++ ++.+|.+
T Consensus 177 -----~~~~~~-~~-~~~-~~~~i~~~Dva~ai~~~l~~~~~-------~g~~~~~~~~--~~~~~~~ 227 (227)
T 3dhn_A 177 -----LGKDDM-IV-DIV-GNSHISVEDYAAAMIDELEHPKH-------HQERFTIGYL--EHHHHHH 227 (227)
T ss_dssp -----EESSBC-CC-CTT-SCCEEEHHHHHHHHHHHHHSCCC-------CSEEEEEECC--SCCC---
T ss_pred -----ecCCCc-cc-CCC-CCcEEeHHHHHHHHHHHHhCccc-------cCcEEEEEee--hhcccCC
Confidence 011111 11 122 28999999999999999998775 5899999999 7887753
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=234.38 Aligned_cols=248 Identities=21% Similarity=0.192 Sum_probs=179.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCC--CcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFP--RVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~--~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+|+|||||||||||++|+++|+++|. .+.+|++++|...... ......+++. |+. +
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~---------------~~~~~~~~~~~Dl~------d 59 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW---------------HEDNPINYVQCDIS------D 59 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC---------------CCSSCCEEEECCTT------S
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc---------------cccCceEEEEeecC------C
Confidence 48899999999999999999999861 1137999999865421 0011223333 776 6
Q ss_pred HHHHHHHhcC---ccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEE-------EEeccccccCC---
Q psy16252 174 PDDKRLVTSK---VNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFT-------YVSTAFSNSYR--- 239 (545)
Q Consensus 174 ~~~~~~l~~~---vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v-------~vSS~~v~~~~--- 239 (545)
.+.+.+++++ +|+|||+||... .+....+++|+.|+.+++++|++. +++++|| |+||.++++..
T Consensus 60 ~~~~~~~~~~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~ 137 (364)
T 2v6g_A 60 PDDSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESH 137 (364)
T ss_dssp HHHHHHHHTTCTTCCEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCC
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCc--chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccC
Confidence 7788888888 999999999764 345778899999999999999985 2688998 89999988763
Q ss_pred -CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cC-CCEEEEccceeecc
Q psy16252 240 -KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QF-FPVCIFRPSIVIST 315 (545)
Q Consensus 240 -~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~-l~~~i~Rp~~i~g~ 315 (545)
.+++|+....| .++.| +.+|+++.++. .+ ++++|+||+.|||+
T Consensus 138 ~~~~~E~~~~~~-----------------------------~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~ 184 (364)
T 2v6g_A 138 DPPYTEDLPRLK-----------------------------YMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGF 184 (364)
T ss_dssp CSSBCTTSCCCS-----------------------------SCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECC
T ss_pred CCCCCccccCCc-----------------------------cchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCC
Confidence 23444322111 12567 45899888875 45 99999999999998
Q ss_pred CCCCCCCCccCccchHHHHHHH--hcCceeEEecCC---CCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 316 WKEPIPGWIDNLYGPTGLVTGA--QAGVVRTFLVDP---DVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~--~~g~~~~~~~~~---~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
...+.. +...+..++..+ ..|....+++++ ....++++|+|+|++++.++.++.. .+++||+++
T Consensus 185 ~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~-------~g~~~ni~~ 253 (364)
T 2v6g_A 185 SPYSMM----NLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYA-------KNEAFNVSN 253 (364)
T ss_dssp CTTCSS----CHHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGGG-------TTEEEEECC
T ss_pred CCCccc----chHHHHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCCCC-------CCceEEecC
Confidence 654211 111111123333 245544445655 4558899999999999999887643 367999999
Q ss_pred CCCCcccHHHHHHHHHHhhcccC
Q psy16252 391 SKDNPLTWGEFITKSLKEGVKIP 413 (545)
Q Consensus 391 ~~~~~~t~~el~~~l~~~~~~~~ 413 (545)
+ +++|+.|+++.+.+.+|...
T Consensus 254 ~--~~~s~~e~~~~i~~~~g~~~ 274 (364)
T 2v6g_A 254 G--DVFKWKHFWKVLAEQFGVEC 274 (364)
T ss_dssp S--CCBCHHHHHHHHHHHHTCCB
T ss_pred C--CcCCHHHHHHHHHHHhCCCC
Confidence 8 78999999999999988643
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=223.70 Aligned_cols=217 Identities=18% Similarity=0.219 Sum_probs=167.1
Q ss_pred cEEEEeccccccchHHHHHHHhh--CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRS--FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~--g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
|+|||||||||||+++++.|++. |+ +|+++.|+.... ..+. ....+++. |+. +.
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~~~~---~~l~-----------~~~~~~~~~D~~------d~ 57 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPAS---QIIAIVRNVEKA---STLA-----------DQGVEVRHGDYN------QP 57 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGG---GEEEEESCTTTT---HHHH-----------HTTCEEEECCTT------CH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCC---eEEEEEcCHHHH---hHHh-----------hcCCeEEEeccC------CH
Confidence 57999999999999999999997 54 688999975432 1111 12333444 777 67
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHH
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYS 254 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~ 254 (545)
+.+.++++++|+|||+|+.. ... ++|+.++.+++++|++. ++++|||+||.+++..
T Consensus 58 ~~l~~~~~~~d~vi~~a~~~-~~~------~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~~---------------- 113 (287)
T 2jl1_A 58 ESLQKAFAGVSKLLFISGPH-YDN------TLLIVQHANVVKAARDA-GVKHIAYTGYAFAEES---------------- 113 (287)
T ss_dssp HHHHHHTTTCSEEEECCCCC-SCH------HHHHHHHHHHHHHHHHT-TCSEEEEEEETTGGGC----------------
T ss_pred HHHHHHHhcCCEEEEcCCCC-cCc------hHHHHHHHHHHHHHHHc-CCCEEEEECCCCCCCC----------------
Confidence 88999999999999999963 221 67999999999999997 8899999999977421
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHH
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLV 334 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~ 334 (545)
+..|+.+|+.+|+++++ .+++++++||+.++|+.. . .+ +.
T Consensus 114 --------------------------~~~y~~~K~~~E~~~~~--~~~~~~ilrp~~~~~~~~---~----~~-----~~ 153 (287)
T 2jl1_A 114 --------------------------IIPLAHVHLATEYAIRT--TNIPYTFLRNALYTDFFV---N----EG-----LR 153 (287)
T ss_dssp --------------------------CSTHHHHHHHHHHHHHH--TTCCEEEEEECCBHHHHS---S----GG-----GH
T ss_pred --------------------------CCchHHHHHHHHHHHHH--cCCCeEEEECCEeccccc---h----hh-----HH
Confidence 14699999999999986 589999999999887531 1 01 11
Q ss_pred HHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 335 TGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 335 ~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
.....|... ...++...++++++|+|++++.++..+.. .+++||++++ +++|+.|+++.+.+.+|..
T Consensus 154 ~~~~~~~~~--~~~~~~~~~~i~~~Dva~~~~~~~~~~~~-------~g~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 220 (287)
T 2jl1_A 154 ASTESGAIV--TNAGSGIVNSVTRNELALAAATVLTEEGH-------ENKTYNLVSN--QPWTFDELAQILSEVSGKK 220 (287)
T ss_dssp HHHHHTEEE--ESCTTCCBCCBCHHHHHHHHHHHHTSSSC-------TTEEEEECCS--SCBCHHHHHHHHHHHHSSC
T ss_pred HHhhCCcee--ccCCCCccCccCHHHHHHHHHHHhcCCCC-------CCcEEEecCC--CcCCHHHHHHHHHHHHCCc
Confidence 112234332 34567889999999999999999876543 3689999998 8999999999999998864
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-27 Score=235.39 Aligned_cols=258 Identities=16% Similarity=0.132 Sum_probs=166.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh-hcCCCccc-CCCCCCCCCCH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK-FTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~-~~~~~~~~-Dl~~~~lgl~~ 174 (545)
+|+|||||||||||++|+++|++.|+ +|++++|+.........+.. +. ....+++. |+++ .
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~---~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~~~~~Dl~d------~ 71 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY---AVNTTVRDPDNQKKVSHLLE--------LQELGDLKIFRADLTD------E 71 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC---EEEEEESCTTCTTTTHHHHH--------HGGGSCEEEEECCTTT------S
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC---EEEEEEcCcchhhhHHHHHh--------cCCCCcEEEEecCCCC------h
Confidence 68999999999999999999999876 68888887543221111111 11 11233444 8874 3
Q ss_pred HHHHHHhcCccEEEEccccccch--HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccc-ccC---C--Ccccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFD--EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFS-NSY---R--KNIEEII 246 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~--~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v-~~~---~--~~i~E~~ 246 (545)
+.+.++++++|+|||+||...+. .+.+..+++|+.||.+++++|.+.+++++|||+||.++ ++. . .+++|+.
T Consensus 72 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~ 151 (338)
T 2rh8_A 72 LSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKN 151 (338)
T ss_dssp SSSHHHHTTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTT
T ss_pred HHHHHHHcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhh
Confidence 45777888999999999976543 22244789999999999999998734899999999874 221 1 1344442
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCc
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
...+. ...+.. .....|+.||..+|++++.+. .+++++++||+.|||+...+.
T Consensus 152 ~~~~~----------------~~~~~~-----~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~---- 206 (338)
T 2rh8_A 152 WTDIE----------------FLTSAK-----PPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSD---- 206 (338)
T ss_dssp TTCC----------------------------CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSS----
T ss_pred ccchh----------------hccccC-----CccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCC----
Confidence 11100 000000 001259999999999998865 589999999999999864321
Q ss_pred cCccchHHHHHHHhcCceeEEecC------CCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccH
Q psy16252 325 DNLYGPTGLVTGAQAGVVRTFLVD------PDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTW 398 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~ 398 (545)
.......+.....|... ..+. +....++++|+|||++++.++..... ++.|+++++ .+|+
T Consensus 207 --~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~--------~~~~~~~~~---~~s~ 272 (338)
T 2rh8_A 207 --VPSSIGLAMSLITGNEF-LINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESA--------SGRYICCAA---NTSV 272 (338)
T ss_dssp --CCHHHHHHHHHHHTCHH-HHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHCTTC--------CEEEEECSE---EECH
T ss_pred --CCchHHHHHHHHcCCcc-ccccccccccccCcccEEEHHHHHHHHHHHHcCCCc--------CCcEEEecC---CCCH
Confidence 11111111111223211 0110 11234899999999999998865433 457887763 6899
Q ss_pred HHHHHHHHHhhc
Q psy16252 399 GEFITKSLKEGV 410 (545)
Q Consensus 399 ~el~~~l~~~~~ 410 (545)
.|+++.+.+..+
T Consensus 273 ~e~~~~l~~~~~ 284 (338)
T 2rh8_A 273 PELAKFLSKRYP 284 (338)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 999999988754
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=230.07 Aligned_cols=258 Identities=17% Similarity=0.158 Sum_probs=166.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh--hcCCCccc-CCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK--FTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~--~~~~~~~~-Dl~~~~lgl 172 (545)
++++|||||||||||++|+++|+++|+ +|++++|+.... .++.... .+. ....+++. |++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~r~~~~~---~~~~~~~-----~~~~~~~~~~~~~~Dl~------ 66 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGY---TVRATVRDPTNV---KKVKHLL-----DLPKAETHLTLWKADLA------ 66 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCTTCH---HHHHHHH-----TSTTHHHHEEEEECCTT------
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC---EEEEEECCcchh---HHHHHHH-----hcccCCCeEEEEEcCCC------
Confidence 468999999999999999999999876 688888875421 1111100 000 01223344 887
Q ss_pred CHHHHHHHhcCccEEEEccccccch--HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccc-cCC---Ccccccc
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRFD--EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSN-SYR---KNIEEII 246 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~~--~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~-~~~---~~i~E~~ 246 (545)
+.+.+..+++++|+|||+||...+. .+.+..+++|+.||.+++++|.+.+.+++|||+||.+++ +.. ..++|+.
T Consensus 67 d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~ 146 (337)
T 2c29_D 67 DEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESC 146 (337)
T ss_dssp STTTTHHHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTC
T ss_pred CHHHHHHHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCccc
Confidence 3456788889999999999976432 234567899999999999999987348999999999743 321 1234432
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCc
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
+.. . +...+ .....+.|+.||+.+|+++..+. .+++++++||+.|||+...+.
T Consensus 147 ~~~-~------------------~~~~~--~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~---- 201 (337)
T 2c29_D 147 WSD-M------------------EFCRA--KKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSS---- 201 (337)
T ss_dssp CCC-H------------------HHHHH--HCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSS----
T ss_pred CCc-h------------------hhhcc--cCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCC----
Confidence 110 0 00000 00112579999999999998765 689999999999999864321
Q ss_pred cCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHH
Q psy16252 325 DNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITK 404 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~ 404 (545)
+............|... ..... ....+++|+|||++++.++..... .+.|++++ ..+|+.|+++.
T Consensus 202 --~~~~~~~~~~~~~g~~~-~~~~~-~~~~~i~v~Dva~a~~~~~~~~~~--------~~~~~~~~---~~~s~~e~~~~ 266 (337)
T 2c29_D 202 --MPPSLITALSPITGNEA-HYSII-RQGQFVHLDDLCNAHIYLFENPKA--------EGRYICSS---HDCIILDLAKM 266 (337)
T ss_dssp --CCHHHHHHTHHHHTCGG-GHHHH-TEEEEEEHHHHHHHHHHHHHCTTC--------CEEEEECC---EEEEHHHHHHH
T ss_pred --CCchHHHHHHHHcCCCc-ccccc-CCCCEEEHHHHHHHHHHHhcCccc--------CceEEEeC---CCCCHHHHHHH
Confidence 11000111011222211 11111 123499999999999998865433 45787655 46899999999
Q ss_pred HHHhhc
Q psy16252 405 SLKEGV 410 (545)
Q Consensus 405 l~~~~~ 410 (545)
+.+.++
T Consensus 267 i~~~~~ 272 (337)
T 2c29_D 267 LREKYP 272 (337)
T ss_dssp HHHHCT
T ss_pred HHHHCC
Confidence 998753
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=217.18 Aligned_cols=215 Identities=15% Similarity=0.139 Sum_probs=162.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCC-Cccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS-TSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~-~~~~-Dl~~~~lgl 172 (545)
+++|+|||||||||||++++++|+++|+ +|+++.|+... +.. +..... +++. |++
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~~~------~~~--------~~~~~~~~~~~~Dl~------ 75 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGH---EPVAMVRNEEQ------GPE--------LRERGASDIVVANLE------ 75 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSGGG------HHH--------HHHTTCSEEEECCTT------
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCC---eEEEEECChHH------HHH--------HHhCCCceEEEcccH------
Confidence 6789999999999999999999999875 79999997532 111 111234 4444 776
Q ss_pred CHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCC
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTH 252 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~ 252 (545)
+.+.++++++|+|||+||.... ..++..+++|+.++.+++++|++. ++++||++||..+.... ...
T Consensus 76 --~~~~~~~~~~D~vi~~ag~~~~-~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~~-----~~~----- 141 (236)
T 3e8x_A 76 --EDFSHAFASIDAVVFAAGSGPH-TGADKTILIDLWGAIKTIQEAEKR-GIKRFIMVSSVGTVDPD-----QGP----- 141 (236)
T ss_dssp --SCCGGGGTTCSEEEECCCCCTT-SCHHHHHHTTTHHHHHHHHHHHHH-TCCEEEEECCTTCSCGG-----GSC-----
T ss_pred --HHHHHHHcCCCEEEECCCCCCC-CCccccchhhHHHHHHHHHHHHHc-CCCEEEEEecCCCCCCC-----CCh-----
Confidence 2356677899999999997653 456778899999999999999987 78999999996543221 000
Q ss_pred HHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHH
Q psy16252 253 YSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTG 332 (545)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~ 332 (545)
...+.|+.+|+.+|.+++. .+++++++|||.|+|+...
T Consensus 142 --------------------------~~~~~Y~~sK~~~e~~~~~--~gi~~~~lrpg~v~~~~~~-------------- 179 (236)
T 3e8x_A 142 --------------------------MNMRHYLVAKRLADDELKR--SSLDYTIVRPGPLSNEEST-------------- 179 (236)
T ss_dssp --------------------------GGGHHHHHHHHHHHHHHHH--SSSEEEEEEECSEECSCCC--------------
T ss_pred --------------------------hhhhhHHHHHHHHHHHHHH--CCCCEEEEeCCcccCCCCC--------------
Confidence 0116899999999999985 6899999999999997321
Q ss_pred HHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 333 LVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 333 ~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
+... .........++++++|+|++++.++..+.. .+++||++++ ++++.|+++.+.
T Consensus 180 -------~~~~-~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~-------~g~~~~v~~~---~~~~~e~~~~i~ 235 (236)
T 3e8x_A 180 -------GKVT-VSPHFSEITRSITRHDVAKVIAELVDQQHT-------IGKTFEVLNG---DTPIAKVVEQLG 235 (236)
T ss_dssp -------SEEE-EESSCSCCCCCEEHHHHHHHHHHHTTCGGG-------TTEEEEEEEC---SEEHHHHHHTC-
T ss_pred -------CeEE-eccCCCcccCcEeHHHHHHHHHHHhcCccc-------cCCeEEEeCC---CcCHHHHHHHhc
Confidence 1111 223445578999999999999999987754 4789999987 499999988654
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=221.65 Aligned_cols=213 Identities=16% Similarity=0.145 Sum_probs=159.7
Q ss_pred EEEEeccccccchHHHHHHHhh--CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRS--FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~--g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|||||||||||++++++|++. |+ +|+++.|++.... .+. ....+++. |+. +.+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~~~~~---~~~-----------~~~~~~~~~D~~------d~~ 57 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS---QIVAIVRNPAKAQ---ALA-----------AQGITVRQADYG------DEA 57 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG---GEEEEESCTTTCH---HHH-----------HTTCEEEECCTT------CHH
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc---eEEEEEcChHhhh---hhh-----------cCCCeEEEcCCC------CHH
Confidence 4899999999999999999997 54 6889999754321 111 11333444 777 678
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSE 255 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~ 255 (545)
.+.++++++|+|||+|+... ..|+.++.+++++|++. ++++|||+||.+++..
T Consensus 58 ~~~~~~~~~d~vi~~a~~~~---------~~~~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~~----------------- 110 (286)
T 2zcu_A 58 ALTSALQGVEKLLLISSSEV---------GQRAPQHRNVINAAKAA-GVKFIAYTSLLHADTS----------------- 110 (286)
T ss_dssp HHHHHTTTCSEEEECC-----------------CHHHHHHHHHHHH-TCCEEEEEEETTTTTC-----------------
T ss_pred HHHHHHhCCCEEEEeCCCCc---------hHHHHHHHHHHHHHHHc-CCCEEEEECCCCCCCC-----------------
Confidence 89999999999999998521 25889999999999997 7899999999977511
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHH
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVT 335 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~ 335 (545)
+..|+.+|+.+|+++++ .+++++++||+.++++.. . .+..
T Consensus 111 -------------------------~~~y~~sK~~~e~~~~~--~~~~~~ilrp~~~~~~~~----~---------~~~~ 150 (286)
T 2zcu_A 111 -------------------------PLGLADEHIETEKMLAD--SGIVYTLLRNGWYSENYL----A---------SAPA 150 (286)
T ss_dssp -------------------------CSTTHHHHHHHHHHHHH--HCSEEEEEEECCBHHHHH----T---------THHH
T ss_pred -------------------------cchhHHHHHHHHHHHHH--cCCCeEEEeChHHhhhhH----H---------HhHH
Confidence 14699999999999987 589999999988766421 0 0111
Q ss_pred HHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 336 GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 336 ~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
....+... .+.++...++++++|+|++++.++..+.. .+++||++++ +++|+.|+++.+.+.+|..
T Consensus 151 ~~~~~~~~--~~~~~~~~~~i~~~Dva~~~~~~~~~~~~-------~g~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 216 (286)
T 2zcu_A 151 ALEHGVFI--GAAGDGKIASATRADYAAAAARVISEAGH-------EGKVYELAGD--SAWTLTQLAAELTKQSGKQ 216 (286)
T ss_dssp HHHHTEEE--ESCTTCCBCCBCHHHHHHHHHHHHHSSSC-------TTCEEEECCS--SCBCHHHHHHHHHHHHSSC
T ss_pred hhcCCcee--ccCCCCccccccHHHHHHHHHHHhcCCCC-------CCceEEEeCC--CcCCHHHHHHHHHHHHCCC
Confidence 12234332 45667889999999999999999876543 4789999998 7899999999999998864
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-26 Score=219.92 Aligned_cols=209 Identities=11% Similarity=0.087 Sum_probs=164.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|||||||||||++|+++|++.|+ +|+++.|+..... .....++. |++ +.+
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~---~V~~~~r~~~~~~-----------------~~~~~~~~~Dl~------d~~ 56 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAE---ILRLADLSPLDPA-----------------GPNEECVQCDLA------DAN 56 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEE---EEEEEESSCCCCC-----------------CTTEEEEECCTT------CHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC---EEEEEecCCcccc-----------------CCCCEEEEcCCC------CHH
Confidence 58999999999999999999999865 7899999865432 01222333 887 778
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---cccccccCCCCC
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---NIEEIIYKAHTH 252 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---~i~E~~~~~~~~ 252 (545)
++..+++++|+|||+||... ..+++..+++|+.|+.+++++|++. ++++|||+||..+++... .+.|+....|
T Consensus 57 ~~~~~~~~~D~vi~~Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~-- 132 (267)
T 3rft_A 57 AVNAMVAGCDGIVHLGGISV-EKPFEQILQGNIIGLYNLYEAARAH-GQPRIVFASSNHTIGYYPQTERLGPDVPARP-- 132 (267)
T ss_dssp HHHHHHTTCSEEEECCSCCS-CCCHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGTTSBTTSCBCTTSCCCC--
T ss_pred HHHHHHcCCCEEEECCCCcC-cCCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcchHHhCCCCCCCCCCCCCCCCC--
Confidence 99999999999999999853 4567888999999999999999987 789999999998886422 3444332222
Q ss_pred HHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 253 YSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
.+.|+.||+.+|.+++.++ .+++++++||+.|+|+.
T Consensus 133 ----------------------------~~~Y~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~-------------- 170 (267)
T 3rft_A 133 ----------------------------DGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEP-------------- 170 (267)
T ss_dssp ----------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSC--------------
T ss_pred ----------------------------CChHHHHHHHHHHHHHHHHHHhCCeEEEEEeecccCCC--------------
Confidence 2789999999999998765 68999999999998851
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHH
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFI 402 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~ 402 (545)
.++....++++++|+++++..++..... ...+++++++ ++.+|.++.
T Consensus 171 ----------------~~~~~~~~~~~~~d~a~~~~~~~~~~~~-------~~~~~~~~s~--~~~~~~~~~ 217 (267)
T 3rft_A 171 ----------------NNYRMLSTWFSHDDFVSLIEAVFRAPVL-------GCPVVWGASA--NDAGWWDNS 217 (267)
T ss_dssp ----------------CSTTHHHHBCCHHHHHHHHHHHHHCSCC-------CSCEEEECCC--CTTCCBCCG
T ss_pred ----------------CCCCceeeEEcHHHHHHHHHHHHhCCCC-------CceEEEEeCC--CCCCcccCh
Confidence 2334556789999999999998877654 3568888877 566766653
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-26 Score=214.66 Aligned_cols=208 Identities=15% Similarity=0.174 Sum_probs=160.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC-HH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS-PD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~-~~ 175 (545)
|+|||||||||||++++++|++.|+ +|+++.|+....... ...+++. |++ + .+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~~~~~----------------~~~~~~~~D~~------d~~~ 55 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY---QIYAGARKVEQVPQY----------------NNVKAVHFDVD------WTPE 55 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC---EEEEEESSGGGSCCC----------------TTEEEEECCTT------SCHH
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCccchhhc----------------CCceEEEeccc------CCHH
Confidence 5799999999999999999999875 799999985432110 1233334 777 5 78
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSE 255 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~ 255 (545)
++.++++++|+|||+||.... ..+++|+.++.+++++|++. ++++|||+||.+++.... ..|
T Consensus 56 ~~~~~~~~~d~vi~~ag~~~~-----~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~~~-~~e----------- 117 (219)
T 3dqp_A 56 EMAKQLHGMDAIINVSGSGGK-----SLLKVDLYGAVKLMQAAEKA-EVKRFILLSTIFSLQPEK-WIG----------- 117 (219)
T ss_dssp HHHTTTTTCSEEEECCCCTTS-----SCCCCCCHHHHHHHHHHHHT-TCCEEEEECCTTTTCGGG-CCS-----------
T ss_pred HHHHHHcCCCEEEECCcCCCC-----CcEeEeHHHHHHHHHHHHHh-CCCEEEEECcccccCCCc-ccc-----------
Confidence 899999999999999998652 26788999999999999997 889999999988765321 111
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHH
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVT 335 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~ 335 (545)
....+ .+.|+.+|+.+|+++++ ..+++++++|||.++|+....
T Consensus 118 --------------~~~~~------~~~Y~~sK~~~e~~~~~-~~~i~~~ilrp~~v~g~~~~~---------------- 160 (219)
T 3dqp_A 118 --------------AGFDA------LKDYYIAKHFADLYLTK-ETNLDYTIIQPGALTEEEATG---------------- 160 (219)
T ss_dssp --------------HHHHH------THHHHHHHHHHHHHHHH-SCCCEEEEEEECSEECSCCCS----------------
T ss_pred --------------ccccc------ccHHHHHHHHHHHHHHh-ccCCcEEEEeCceEecCCCCC----------------
Confidence 00011 26899999999999962 368999999999999973221
Q ss_pred HHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHH
Q psy16252 336 GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITK 404 (545)
Q Consensus 336 ~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~ 404 (545)
... .++...++++++|+|++++.++.++.. .+++||++++ +.+++|+++.
T Consensus 161 -----~~~----~~~~~~~~i~~~Dva~~i~~~l~~~~~-------~g~~~~i~~g---~~~~~e~~~~ 210 (219)
T 3dqp_A 161 -----LID----INDEVSASNTIGDVADTIKELVMTDHS-------IGKVISMHNG---KTAIKEALES 210 (219)
T ss_dssp -----EEE----ESSSCCCCEEHHHHHHHHHHHHTCGGG-------TTEEEEEEEC---SEEHHHHHHT
T ss_pred -----ccc----cCCCcCCcccHHHHHHHHHHHHhCccc-------cCcEEEeCCC---CccHHHHHHH
Confidence 111 126678999999999999999987665 4789999987 4899988653
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=218.50 Aligned_cols=216 Identities=11% Similarity=0.047 Sum_probs=160.0
Q ss_pred cEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|+|||||||||||+++++.|++. |+ +|++++|++..... +....++++. |+. +++
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~---~V~~~~R~~~~~~~--------------~~~~~v~~~~~D~~------d~~ 57 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHID---HFHIGVRNVEKVPD--------------DWRGKVSVRQLDYF------NQE 57 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCT---TEEEEESSGGGSCG--------------GGBTTBEEEECCTT------CHH
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCC---cEEEEECCHHHHHH--------------hhhCCCEEEEcCCC------CHH
Confidence 57999999999999999999886 54 68999998643221 1122344444 887 778
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSE 255 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~ 255 (545)
.+..+++++|+|||+|+..... ..|+.++.+++++|++. ++++|||+||.+.....
T Consensus 58 ~l~~~~~~~d~vi~~a~~~~~~-------~~~~~~~~~l~~aa~~~-gv~~iv~~Ss~~~~~~~---------------- 113 (289)
T 3e48_A 58 SMVEAFKGMDTVVFIPSIIHPS-------FKRIPEVENLVYAAKQS-GVAHIIFIGYYADQHNN---------------- 113 (289)
T ss_dssp HHHHHTTTCSEEEECCCCCCSH-------HHHHHHHHHHHHHHHHT-TCCEEEEEEESCCSTTC----------------
T ss_pred HHHHHHhCCCEEEEeCCCCccc-------hhhHHHHHHHHHHHHHc-CCCEEEEEcccCCCCCC----------------
Confidence 9999999999999999976532 34899999999999997 89999999995432110
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHH
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVT 335 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~ 335 (545)
+..+...+..+|..+.+ .+++++++|||.++|+. ..++.
T Consensus 114 -------------------------~~~~~~~~~~~e~~~~~--~g~~~~ilrp~~~~~~~--------------~~~~~ 152 (289)
T 3e48_A 114 -------------------------PFHMSPYFGYASRLLST--SGIDYTYVRMAMYMDPL--------------KPYLP 152 (289)
T ss_dssp -------------------------CSTTHHHHHHHHHHHHH--HCCEEEEEEECEESTTH--------------HHHHH
T ss_pred -------------------------CCccchhHHHHHHHHHH--cCCCEEEEecccccccc--------------HHHHH
Confidence 01122223355666655 58999999999998851 11222
Q ss_pred HHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 336 GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 336 ~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
....+.. ...+.++...++++++|+|++++.++..+.. .+++||++ + +++|+.|+++.+.+.+|+.
T Consensus 153 ~~~~~~~-~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~-------~g~~~~~~-~--~~~s~~e~~~~~~~~~g~~ 218 (289)
T 3e48_A 153 ELMNMHK-LIYPAGDGRINYITRNDIARGVIAIIKNPDT-------WGKRYLLS-G--YSYDMKELAAILSEASGTE 218 (289)
T ss_dssp HHHHHTE-ECCCCTTCEEEEECHHHHHHHHHHHHHCGGG-------TTCEEEEC-C--EEEEHHHHHHHHHHHHTSC
T ss_pred HHHHCCC-EecCCCCceeeeEEHHHHHHHHHHHHcCCCc-------CCceEEeC-C--CcCCHHHHHHHHHHHHCCc
Confidence 2222211 2345678899999999999999999987765 37899999 8 8999999999999998873
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=218.79 Aligned_cols=216 Identities=12% Similarity=0.087 Sum_probs=165.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.|+ +|+++.|....... ....++. |++ +.+.
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~-----------------~~~~~~~~Dl~------d~~~ 56 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAH---EVRLSDIVDLGAAE-----------------AHEEIVACDLA------DAQA 56 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEE---EEEECCSSCCCCCC-----------------TTEEECCCCTT------CHHH
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCC---EEEEEeCCCccccC-----------------CCccEEEccCC------CHHH
Confidence 6899999999999999999999864 79999997643210 0122333 776 6788
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---cccccccCCCCCH
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---NIEEIIYKAHTHY 253 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---~i~E~~~~~~~~~ 253 (545)
+.++++++|+|||+||... ...++..+++|+.++.+++++|.+. ++++|||+||.++++... +++|+..+.|
T Consensus 57 ~~~~~~~~d~vi~~a~~~~-~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~--- 131 (267)
T 3ay3_A 57 VHDLVKDCDGIIHLGGVSV-ERPWNDILQANIIGAYNLYEAARNL-GKPRIVFASSNHTIGYYPRTTRIDTEVPRRP--- 131 (267)
T ss_dssp HHHHHTTCSEEEECCSCCS-CCCHHHHHHHTHHHHHHHHHHHHHT-TCCEEEEEEEGGGSTTSBTTSCBCTTSCCCC---
T ss_pred HHHHHcCCCEEEECCcCCC-CCCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCHHHhCCCCCCCCCCCCCCCCC---
Confidence 9999999999999999763 3446778899999999999999986 789999999999887532 3444432222
Q ss_pred HHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCccchH
Q psy16252 254 SELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPT 331 (545)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~ 331 (545)
.+.|+.||+.+|.+++.+. .+++++++||+.||+. + .
T Consensus 132 ---------------------------~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~---~--~--------- 170 (267)
T 3ay3_A 132 ---------------------------DSLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPK---P--K--------- 170 (267)
T ss_dssp ---------------------------CSHHHHHHHHHHHHHHHHHHTTCCCEEEEEECBCSSS---C--C---------
T ss_pred ---------------------------CChHHHHHHHHHHHHHHHHHHcCCCEEEEeceeecCC---C--C---------
Confidence 2789999999999998765 6899999999999842 1 0
Q ss_pred HHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhcc
Q psy16252 332 GLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVK 411 (545)
Q Consensus 332 ~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~ 411 (545)
+++...++++++|+|++++.++..+.. ...+||+.++ ...++.++.+. +.+|.
T Consensus 171 ----------------~~~~~~~~~~~~dva~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~d~~~~--~~lg~ 223 (267)
T 3ay3_A 171 ----------------DARMMATWLSVDDFMRLMKRAFVAPKL-------GCTVVYGASA--NTESWWDNDKS--AFLGW 223 (267)
T ss_dssp ----------------SHHHHHHBCCHHHHHHHHHHHHHSSCC-------CEEEEEECCS--CSSCCBCCGGG--GGGCC
T ss_pred ----------------CCCeeeccccHHHHHHHHHHHHhCCCC-------CceeEecCCC--ccccccCHHHH--HHcCC
Confidence 112356889999999999999876543 2478998887 67788887766 55554
Q ss_pred c
Q psy16252 412 I 412 (545)
Q Consensus 412 ~ 412 (545)
.
T Consensus 224 ~ 224 (267)
T 3ay3_A 224 V 224 (267)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=211.03 Aligned_cols=221 Identities=18% Similarity=0.117 Sum_probs=168.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++++++|++ |+ +|+++.|+.... + . +. |++ +.+.
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~---~V~~~~r~~~~~---~----------------~---~~~Dl~------~~~~ 48 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RH---EVIKVYNSSEIQ---G----------------G---YKLDLT------DFPR 48 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TS---CEEEEESSSCCT---T----------------C---EECCTT------SHHH
T ss_pred CEEEEECCCChhHHHHHHHHhc-CC---eEEEecCCCcCC---C----------------C---ceeccC------CHHH
Confidence 4799999999999999999995 54 688999976321 0 0 11 776 6678
Q ss_pred HHHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-cccccccCCC
Q psy16252 177 KRLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-NIEEIIYKAH 250 (545)
Q Consensus 177 ~~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-~i~E~~~~~~ 250 (545)
+..++++ +|+|||+||..... +.++..+++|+.++.+++++|.+. +. +|||+||.++++... ++.|+..+.|
T Consensus 49 ~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~iv~~SS~~~~~~~~~~~~e~~~~~~ 126 (273)
T 2ggs_A 49 LEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI-DS-YIVHISTDYVFDGEKGNYKEEDIPNP 126 (273)
T ss_dssp HHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEEEEGGGSCSSSCSBCTTSCCCC
T ss_pred HHHHHHhcCCCEEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEecceeEcCCCCCcCCCCCCCC
Confidence 8888876 99999999987543 456788999999999999999986 55 899999999986543 3444432221
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
.+.|+.||+.+|.+++. ++++++||+.|||+ . + + .
T Consensus 127 ------------------------------~~~Y~~sK~~~e~~~~~----~~~~~iR~~~v~G~--~---~----~--~ 161 (273)
T 2ggs_A 127 ------------------------------INYYGLSKLLGETFALQ----DDSLIIRTSGIFRN--K---G----F--P 161 (273)
T ss_dssp ------------------------------SSHHHHHHHHHHHHHCC----TTCEEEEECCCBSS--S---S----H--H
T ss_pred ------------------------------CCHHHHHHHHHHHHHhC----CCeEEEeccccccc--c---H----H--H
Confidence 27899999999999976 68899999999972 1 1 1 1
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhc
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~ 410 (545)
..++.....|......++ ..++++++|+|++++.++.... .++||+++ +++|+.|+++.+.+.+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~~~---------~g~~~i~~---~~~s~~e~~~~~~~~~g 226 (273)
T 2ggs_A 162 IYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLELRK---------TGIIHVAG---ERISRFELALKIKEKFN 226 (273)
T ss_dssp HHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHHTC---------CEEEECCC---CCEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhcCc---------CCeEEECC---CcccHHHHHHHHHHHhC
Confidence 223344445544434333 7899999999999999987643 35999987 48999999999999987
Q ss_pred cc
Q psy16252 411 KI 412 (545)
Q Consensus 411 ~~ 412 (545)
..
T Consensus 227 ~~ 228 (273)
T 2ggs_A 227 LP 228 (273)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=217.79 Aligned_cols=233 Identities=13% Similarity=0.053 Sum_probs=168.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+++|||||||||||++|++.|++.|+ +|++++|+..... .+... ...+...+++++. |+. +
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~~~~~--~~~~~-----~~~l~~~~v~~~~~Dl~------d 71 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHR---PTYILARPGPRSP--SKAKI-----FKALEDKGAIIVYGLIN------E 71 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTC---CEEEEECSSCCCH--HHHHH-----HHHHHHTTCEEEECCTT------C
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCC---CEEEEECCCCCCh--hHHHH-----HHHHHhCCcEEEEeecC------C
Confidence 3467999999999999999999999875 6899999864321 11111 1112234555555 887 7
Q ss_pred HHHHHHHhc--CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCC
Q psy16252 174 PDDKRLVTS--KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHT 251 (545)
Q Consensus 174 ~~~~~~l~~--~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~ 251 (545)
.+++.++++ ++|+|||+||.. |+.++.+++++|++.+.+++||+ |+ ++. ..+|.....|
T Consensus 72 ~~~l~~~~~~~~~d~Vi~~a~~~------------n~~~~~~l~~aa~~~g~v~~~v~-S~---~g~--~~~e~~~~~p- 132 (346)
T 3i6i_A 72 QEAMEKILKEHEIDIVVSTVGGE------------SILDQIALVKAMKAVGTIKRFLP-SE---FGH--DVNRADPVEP- 132 (346)
T ss_dssp HHHHHHHHHHTTCCEEEECCCGG------------GGGGHHHHHHHHHHHCCCSEEEC-SC---CSS--CTTTCCCCTT-
T ss_pred HHHHHHHHhhCCCCEEEECCchh------------hHHHHHHHHHHHHHcCCceEEee-cc---cCC--CCCccCcCCC-
Confidence 789999999 999999999973 88899999999999833999986 43 221 1122111111
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchH
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPT 331 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~ 331 (545)
.+.|+.+|+.+|+++++ .+++++++|||.++|...... .
T Consensus 133 -----------------------------~~~y~~sK~~~e~~l~~--~g~~~tivrpg~~~g~~~~~~-------~--- 171 (346)
T 3i6i_A 133 -----------------------------GLNMYREKRRVRQLVEE--SGIPFTYICCNSIASWPYYNN-------I--- 171 (346)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHH--TTCCBEEEECCEESSCCCSCC-----------
T ss_pred -----------------------------cchHHHHHHHHHHHHHH--cCCCEEEEEecccccccCccc-------c---
Confidence 16899999999999988 589999999999999632211 1
Q ss_pred HHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec-CCCCcccHHHHHHHHHHhhc
Q psy16252 332 GLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN-SKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 332 ~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~-~~~~~~t~~el~~~l~~~~~ 410 (545)
........+....++++++...++++++|+|++++.++..+.. .+++||+++ + +.+|+.|+++.+.+..|
T Consensus 172 ~~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~~-------~~~~~~i~g~~--~~~s~~e~~~~~~~~~g 242 (346)
T 3i6i_A 172 HPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRT-------LNKSVHFRPSC--NCLNINELASVWEKKIG 242 (346)
T ss_dssp ----CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGGG-------TTEEEECCCGG--GEECHHHHHHHHHHHHT
T ss_pred ccccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCccc-------cCeEEEEeCCC--CCCCHHHHHHHHHHHHC
Confidence 0000111233345678899999999999999999999987754 468899984 4 68999999999999988
Q ss_pred cc
Q psy16252 411 KI 412 (545)
Q Consensus 411 ~~ 412 (545)
+.
T Consensus 243 ~~ 244 (346)
T 3i6i_A 243 RT 244 (346)
T ss_dssp SC
T ss_pred CC
Confidence 74
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=203.82 Aligned_cols=232 Identities=16% Similarity=0.107 Sum_probs=165.7
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+|+|+|||||||||++++++|++.++ ..+|+++.|++. ++.. + .....++. |++ +.
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~-g~~V~~~~r~~~------~~~~--------~-~~~~~~~~~D~~------d~ 60 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSD-KFVAKGLVRSAQ------GKEK--------I-GGEADVFIGDIT------DA 60 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTT-TCEEEEEESCHH------HHHH--------T-TCCTTEEECCTT------SH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCC-CcEEEEEEcCCC------chhh--------c-CCCeeEEEecCC------CH
Confidence 468999999999999999999999831 237899999632 1111 1 12334444 877 67
Q ss_pred HHHHHHhcCccEEEEccccccch----------------HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFD----------------EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~----------------~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
+++.++++++|+|||+||..... +.....+++|+.++.+++++|++. ++++||++||.+++..
T Consensus 61 ~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~~~ 139 (253)
T 1xq6_A 61 DSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSMGGTNP 139 (253)
T ss_dssp HHHHHHHTTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEEETTTTCT
T ss_pred HHHHHHHcCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-CCCEEEEEcCccCCCC
Confidence 88999999999999999975321 111245789999999999999987 7899999999986532
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCC
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKE 318 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~ 318 (545)
..+. .+ + ....|+.+|+.+|.++++ .+++++++|||.++|+...
T Consensus 140 ~~~~------------------------------~~-~---~~~~y~~sK~~~e~~~~~--~~i~~~~vrpg~v~~~~~~ 183 (253)
T 1xq6_A 140 DHPL------------------------------NK-L---GNGNILVWKRKAEQYLAD--SGTPYTIIRAGGLLDKEGG 183 (253)
T ss_dssp TCGG------------------------------GG-G---GGCCHHHHHHHHHHHHHT--SSSCEEEEEECEEECSCSS
T ss_pred CCcc------------------------------cc-c---cchhHHHHHHHHHHHHHh--CCCceEEEecceeecCCcc
Confidence 1100 00 0 003588999999999976 5899999999999997532
Q ss_pred CCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCC-Cccc
Q psy16252 319 PIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKD-NPLT 397 (545)
Q Consensus 319 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~-~~~t 397 (545)
.. .. .. +....++. ...++++++|+|++++.++..+.. .+++||++++.. ++++
T Consensus 184 ~~-~~---~~-----------~~~~~~~~---~~~~~~~~~Dva~~~~~~~~~~~~-------~g~~~~i~~~~~~~~~s 238 (253)
T 1xq6_A 184 VR-EL---LV-----------GKDDELLQ---TDTKTVPRADVAEVCIQALLFEEA-------KNKAFDLGSKPEGTSTP 238 (253)
T ss_dssp SS-CE---EE-----------ESTTGGGG---SSCCEEEHHHHHHHHHHHTTCGGG-------TTEEEEEEECCTTTSCC
T ss_pred hh-hh---hc-----------cCCcCCcC---CCCcEEcHHHHHHHHHHHHcCccc-------cCCEEEecCCCcCCCCC
Confidence 10 00 00 00000111 134689999999999999887543 468999998631 4699
Q ss_pred HHHHHHHHHHhhcc
Q psy16252 398 WGEFITKSLKEGVK 411 (545)
Q Consensus 398 ~~el~~~l~~~~~~ 411 (545)
+.|+++.+.+.+|+
T Consensus 239 ~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 239 TKDFKALFSQVTSR 252 (253)
T ss_dssp CCCHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999988775
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=202.59 Aligned_cols=213 Identities=8% Similarity=-0.011 Sum_probs=146.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|+++|+ +|++++|+.. ++.. +.....+++. |+++++ .
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~------~~~~--------~~~~~~~~~~~D~~d~~------~ 57 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH---EVLAVVRDPQ------KAAD--------RLGATVATLVKEPLVLT------E 57 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHH--------HTCTTSEEEECCGGGCC------H
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC---EEEEEEeccc------cccc--------ccCCCceEEeccccccc------H
Confidence 5799999999999999999999975 7999999742 1111 1122444555 887543 2
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-----cccccccCCCC
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-----NIEEIIYKAHT 251 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-----~i~E~~~~~~~ 251 (545)
..++++|+|||+||...... ...+|+.++.+++++|++. + ++||++||.+++.... ..+|...+.
T Consensus 58 --~~~~~~d~vi~~ag~~~~~~----~~~~n~~~~~~l~~a~~~~-~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~-- 127 (224)
T 3h2s_A 58 --ADLDSVDAVVDALSVPWGSG----RGYLHLDFATHLVSLLRNS-D-TLAVFILGSASLAMPGADHPMILDFPESAA-- 127 (224)
T ss_dssp --HHHTTCSEEEECCCCCTTSS----CTHHHHHHHHHHHHTCTTC-C-CEEEEECCGGGSBCTTCSSCGGGGCCGGGG--
T ss_pred --hhcccCCEEEECCccCCCcc----hhhHHHHHHHHHHHHHHHc-C-CcEEEEecceeeccCCCCccccccCCCCCc--
Confidence 66789999999999862111 2467999999999999997 6 8999999986654321 111111111
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
..+.|+.+|+.+|.+..... .+++++++||+.|+|+... .++..
T Consensus 128 ----------------------------~~~~y~~sK~~~e~~~~~~~~~~i~~~ivrp~~v~g~~~~--~~~~~----- 172 (224)
T 3h2s_A 128 ----------------------------SQPWYDGALYQYYEYQFLQMNANVNWIGISPSEAFPSGPA--TSYVA----- 172 (224)
T ss_dssp ----------------------------GSTTHHHHHHHHHHHHHHTTCTTSCEEEEEECSBCCCCCC--CCEEE-----
T ss_pred ----------------------------cchhhHHHHHHHHHHHHHHhcCCCcEEEEcCccccCCCcc--cCcee-----
Confidence 12679999999996533332 7999999999999997321 11110
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccH
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTW 398 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~ 398 (545)
.... + ..+....++++++|||++++.++.++.. .+++|++++. ++..+
T Consensus 173 -------~~~~---~-~~~~~~~~~i~~~DvA~~~~~~l~~~~~-------~g~~~~~~~~--~~~~~ 220 (224)
T 3h2s_A 173 -------GKDT---L-LVGEDGQSHITTGNMALAILDQLEHPTA-------IRDRIVVRDA--DLEHH 220 (224)
T ss_dssp -------ESSB---C-CCCTTSCCBCCHHHHHHHHHHHHHSCCC-------TTSEEEEEEC--C----
T ss_pred -------cccc---c-ccCCCCCceEeHHHHHHHHHHHhcCccc-------cCCEEEEecC--cchhc
Confidence 0011 1 1234556899999999999999988765 5899999987 44444
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=204.00 Aligned_cols=230 Identities=13% Similarity=0.069 Sum_probs=167.4
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|+||||||++|++++++|++.|. .+|+++.|++.... .+.+ .....+++. |+. +++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~~V~~~~R~~~~~~-~~~l-----------~~~~~~~~~~D~~------d~~ 64 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGT--FKVRVVTRNPRKKA-AKEL-----------RLQGAEVVQGDQD------DQV 64 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCS--SEEEEEESCTTSHH-HHHH-----------HHTTCEEEECCTT------CHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCC--ceEEEEEcCCCCHH-HHHH-----------HHCCCEEEEecCC------CHH
Confidence 58999999999999999999999861 37999999764311 1111 112344444 777 678
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSE 255 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~ 255 (545)
.+..+++++|+|||+|+..... ..+.|+.++.+++++|++. ++++|||+||..+++...
T Consensus 65 ~l~~~~~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~~~aa~~~-gv~~iv~~S~~~~~~~~~--------------- 123 (299)
T 2wm3_A 65 IMELALNGAYATFIVTNYWESC-----SQEQEVKQGKLLADLARRL-GLHYVVYSGLENIKKLTA--------------- 123 (299)
T ss_dssp HHHHHHTTCSEEEECCCHHHHT-----CHHHHHHHHHHHHHHHHHH-TCSEEEECCCCCHHHHTT---------------
T ss_pred HHHHHHhcCCEEEEeCCCCccc-----cchHHHHHHHHHHHHHHHc-CCCEEEEEcCccccccCC---------------
Confidence 8999999999999999853211 2356889999999999997 899999988876653210
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHH
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVT 335 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~ 335 (545)
...++.|+.+|+.+|+++++ .+++++++|||.++|+... .+....
T Consensus 124 ----------------------~~~~~~y~~sK~~~e~~~~~--~gi~~~ilrp~~~~~~~~~---~~~~~~-------- 168 (299)
T 2wm3_A 124 ----------------------GRLAAAHFDGKGEVEEYFRD--IGVPMTSVRLPCYFENLLS---HFLPQK-------- 168 (299)
T ss_dssp ----------------------TSCCCHHHHHHHHHHHHHHH--HTCCEEEEECCEEGGGGGT---TTCCEE--------
T ss_pred ----------------------CcccCchhhHHHHHHHHHHH--CCCCEEEEeecHHhhhchh---hcCCcc--------
Confidence 01236799999999999987 4899999999999996322 111100
Q ss_pred HHhcCce-eEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 336 GAQAGVV-RTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 336 ~~~~g~~-~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
...|.. ....+.++...++++++|+|++++.++..+.. ..+++|++++ +++|+.|+++.+.+.+|+.
T Consensus 169 -~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~------~~g~~~~~~g---~~~s~~e~~~~~~~~~g~~ 236 (299)
T 2wm3_A 169 -APDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEK------YVGQNIGLST---CRHTAEEYAALLTKHTRKV 236 (299)
T ss_dssp -CTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHH------HTTCEEECCS---EEECHHHHHHHHHHHHSSC
T ss_pred -cCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhh------hCCeEEEeee---ccCCHHHHHHHHHHHHCCC
Confidence 012311 11123467889999999999999999876421 1368999986 4799999999999998874
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-23 Score=195.99 Aligned_cols=211 Identities=19% Similarity=0.195 Sum_probs=153.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|+|+||||||+||++++++|++.|+ ..+|+++.|+........ .....++. |++ +
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~-~~~V~~~~r~~~~~~~~~--------------~~~~~~~~~D~~------d 74 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGL-FSKVTLIGRRKLTFDEEA--------------YKNVNQEVVDFE------K 74 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTC-CSEEEEEESSCCCCCSGG--------------GGGCEEEECCGG------G
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCC-CCEEEEEEcCCCCccccc--------------cCCceEEecCcC------C
Confidence 4578999999999999999999999975 226889999865432100 01222333 777 5
Q ss_pred HHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCH
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHY 253 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~ 253 (545)
.+++..+++++|+||||||.......++..+++|+.++.++++++++. ++++||++||.++++..
T Consensus 75 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~~~iv~~SS~~~~~~~-------------- 139 (242)
T 2bka_A 75 LDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAG-GCKHFNLLSSKGADKSS-------------- 139 (242)
T ss_dssp GGGGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTTC--------------
T ss_pred HHHHHHHhcCCCEEEECCCcccccCCcccceeeeHHHHHHHHHHHHHC-CCCEEEEEccCcCCCCC--------------
Confidence 567888888999999999987655566788999999999999999986 78899999999876421
Q ss_pred HHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCC-CEEEEccceeeccCCCCCCCCccCccchHH
Q psy16252 254 SELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFF-PVCIFRPSIVISTWKEPIPGWIDNLYGPTG 332 (545)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l-~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~ 332 (545)
.+.|+.||+.+|.+++.. ++ +++++|||.|+|+...+. . ...
T Consensus 140 ---------------------------~~~Y~~sK~~~e~~~~~~--~~~~~~~vrpg~v~~~~~~~~-------~-~~~ 182 (242)
T 2bka_A 140 ---------------------------NFLYLQVKGEVEAKVEEL--KFDRYSVFRPGVLLCDRQESR-------P-GEW 182 (242)
T ss_dssp ---------------------------SSHHHHHHHHHHHHHHTT--CCSEEEEEECCEEECTTGGGS-------H-HHH
T ss_pred ---------------------------cchHHHHHHHHHHHHHhc--CCCCeEEEcCceecCCCCCCc-------H-HHH
Confidence 167999999999999875 57 599999999999743210 0 111
Q ss_pred HHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 333 LVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 333 ~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+..... +..+.. .....+++++|+|++++.++.++.. .+.|++.++
T Consensus 183 ~~~~~~-~~~~~~----~~~~~~~~~~dva~~~~~~~~~~~~--------~~~~~~~~~ 228 (242)
T 2bka_A 183 LVRKFF-GSLPDS----WASGHSVPVVTVVRAMLNNVVRPRD--------KQMELLENK 228 (242)
T ss_dssp HHHHHH-CSCCTT----GGGGTEEEHHHHHHHHHHHHTSCCC--------SSEEEEEHH
T ss_pred HHHHhh-cccCcc----ccCCcccCHHHHHHHHHHHHhCccc--------cCeeEeeHH
Confidence 222222 111111 1123589999999999999887654 567776553
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-24 Score=201.25 Aligned_cols=205 Identities=17% Similarity=0.141 Sum_probs=149.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|+|||||||||++++++|+++|+ ..+|+++.|+..... .+.+++. |+. +.+
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~-~~~V~~~~r~~~~~~------------------~~~~~~~~D~~------~~~ 59 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPT-LAKVIAPARKALAEH------------------PRLDNPVGPLA------ELL 59 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTT-CCEEECCBSSCCCCC------------------TTEECCBSCHH------HHG
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCC-CCeEEEEeCCCcccC------------------CCceEEecccc------CHH
Confidence 58999999999999999999999864 237899999865311 0112222 544 333
Q ss_pred HHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYS 254 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~ 254 (545)
.+.+++ +|+|||+|+.... ...++..+++|+.++.+++++|++. ++++|||+||.++++..
T Consensus 60 ~~~~~~--~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~~--------------- 121 (215)
T 2a35_A 60 PQLDGS--IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM-GARHYLVVSALGADAKS--------------- 121 (215)
T ss_dssp GGCCSC--CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTTC---------------
T ss_pred HHHHhh--hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHc-CCCEEEEECCcccCCCC---------------
Confidence 444444 8999999997643 2356778899999999999999987 78999999999876431
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCC-EEEEccceeeccCCCCCCCCccCccchHHH
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFP-VCIFRPSIVISTWKEPIPGWIDNLYGPTGL 333 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~-~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~ 333 (545)
.+.|+.+|+.+|++++.. +++ ++++|||.+||+...+ .+...+
T Consensus 122 --------------------------~~~y~~sK~~~e~~~~~~--~~~~~~~vrp~~v~g~~~~~--~~~~~~------ 165 (215)
T 2a35_A 122 --------------------------SIFYNRVKGELEQALQEQ--GWPQLTIARPSLLFGPREEF--RLAEIL------ 165 (215)
T ss_dssp --------------------------SSHHHHHHHHHHHHHTTS--CCSEEEEEECCSEESTTSCE--EGGGGT------
T ss_pred --------------------------ccHHHHHHHHHHHHHHHc--CCCeEEEEeCceeeCCCCcc--hHHHHH------
Confidence 167999999999999874 799 9999999999985431 111111
Q ss_pred HHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHH
Q psy16252 334 VTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWG 399 (545)
Q Consensus 334 ~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~ 399 (545)
.....+ + . +...++++++|+|++++.++..+. +++||++++ +++++.
T Consensus 166 ----~~~~~~-~-~--~~~~~~i~~~Dva~~~~~~~~~~~---------~~~~~i~~~--~~~~~~ 212 (215)
T 2a35_A 166 ----AAPIAR-I-L--PGKYHGIEACDLARALWRLALEEG---------KGVRFVESD--ELRKLG 212 (215)
T ss_dssp ----TCCCC--------CHHHHHHHHHHHHHHHHHHTCCC---------SEEEEEEHH--HHHHHH
T ss_pred ----HHhhhh-c-c--CCCcCcEeHHHHHHHHHHHHhcCC---------CCceEEcHH--HHHHhh
Confidence 111111 1 1 237899999999999999987653 579999987 555553
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-23 Score=196.48 Aligned_cols=214 Identities=14% Similarity=0.036 Sum_probs=136.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|+++|+ +|+++.|++.. +.. +. ...+++. |+++++ .
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~------~~~--------~~-~~~~~~~~D~~d~~------~ 56 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH---EVTAIVRNAGK------ITQ--------TH-KDINILQKDIFDLT------L 56 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCSHH------HHH--------HC-SSSEEEECCGGGCC------H
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC---EEEEEEcCchh------hhh--------cc-CCCeEEeccccChh------h
Confidence 5799999999999999999999975 79999997421 111 11 2344455 887542 2
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---cccccccCCCCCH
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---NIEEIIYKAHTHY 253 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---~i~E~~~~~~~~~ 253 (545)
+.+.++|+|||+||.... ...+|+.++.+++++|++. ++++||++||.+++.... ...|....
T Consensus 57 --~~~~~~d~vi~~ag~~~~------~~~~~~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~~----- 122 (221)
T 3ew7_A 57 --SDLSDQNVVVDAYGISPD------EAEKHVTSLDHLISVLNGT-VSPRLLVVGGAASLQIDEDGNTLLESKGL----- 122 (221)
T ss_dssp --HHHTTCSEEEECCCSSTT------TTTSHHHHHHHHHHHHCSC-CSSEEEEECCCC----------------------
T ss_pred --hhhcCCCEEEECCcCCcc------ccchHHHHHHHHHHHHHhc-CCceEEEEecceEEEcCCCCccccccCCC-----
Confidence 667899999999998432 2467999999999999987 789999999987654321 11111000
Q ss_pred HHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHh--ccCCCEEEEccceeeccCCCCCCCCccCccchH
Q psy16252 254 SELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEE--AQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPT 331 (545)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~--~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~ 331 (545)
...+.|+.+|..+|.+..-. ..+++++++||+.|+|+... .+ .
T Consensus 123 -------------------------~~~~~y~~~k~~~e~~~~~~~~~~gi~~~ivrp~~v~g~~~~--~~----~---- 167 (221)
T 3ew7_A 123 -------------------------REAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPGER--TG----D---- 167 (221)
T ss_dssp ---------------------------CCCSCCHHHHHHHHHHHHTTTTTSCEEEEECSSCCCCC---------------
T ss_pred -------------------------CCHHHHHHHHHHHHHHHHHHhhccCccEEEEeCcceecCCCc--cC----c----
Confidence 01156999999999973222 37899999999999997211 11 0
Q ss_pred HHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHH
Q psy16252 332 GLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGE 400 (545)
Q Consensus 332 ~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~e 400 (545)
+ . .. +....+.+++ .++++++|||++++.++.++.. .+++||++++ .+.+..|
T Consensus 168 -~-~-~~-~~~~~~~~~~---~~~i~~~Dva~~~~~~l~~~~~-------~g~~~~~~~~--~~~~~~~ 220 (221)
T 3ew7_A 168 -Y-Q-IG-KDHLLFGSDG---NSFISMEDYAIAVLDEIERPNH-------LNEHFTVAGK--LEHHHHH 220 (221)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHSCSC-------TTSEEECCC----------
T ss_pred -e-E-ec-cccceecCCC---CceEeHHHHHHHHHHHHhCccc-------cCCEEEECCC--Ccccccc
Confidence 0 0 00 1111112222 3689999999999999988765 5899999998 5555543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=185.03 Aligned_cols=201 Identities=10% Similarity=-0.015 Sum_probs=146.4
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|+||||||+||++++++|++.|+ +|+++.|++..... .......++. |+. +.+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~---~V~~~~r~~~~~~~--------------~~~~~~~~~~~D~~------~~~ 59 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDSSRLPS--------------EGPRPAHVVVGDVL------QAA 59 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCGGGSCS--------------SSCCCSEEEESCTT------SHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC---eEEEEEeChhhccc--------------ccCCceEEEEecCC------CHH
Confidence 48999999999999999999999875 78999997542210 0011233333 776 678
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSE 255 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~ 255 (545)
++.++++++|+|||+|+...... ..++|+.++.+++++|++. ++++||++||.++++...... .
T Consensus 60 ~~~~~~~~~d~vi~~a~~~~~~~----~~~~n~~~~~~~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~-----~------ 123 (206)
T 1hdo_A 60 DVDKTVAGQDAVIVLLGTRNDLS----PTTVMSEGARNIVAAMKAH-GVDKVVACTSAFLLWDPTKVP-----P------ 123 (206)
T ss_dssp HHHHHHTTCSEEEECCCCTTCCS----CCCHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCTTCSC-----G------
T ss_pred HHHHHHcCCCEEEECccCCCCCC----ccchHHHHHHHHHHHHHHh-CCCeEEEEeeeeeccCccccc-----c------
Confidence 89999999999999999765321 1358999999999999987 789999999998876432100 0
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHH
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVT 335 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~ 335 (545)
..+.|+.+|+.+|+++++ .+++++++||+.++.. .. .+. +.
T Consensus 124 ------------------------~~~~y~~~K~~~e~~~~~--~~i~~~~lrp~~~~~~-~~--~~~---~~------- 164 (206)
T 1hdo_A 124 ------------------------RLQAVTDDHIRMHKVLRE--SGLKYVAVMPPHIGDQ-PL--TGA---YT------- 164 (206)
T ss_dssp ------------------------GGHHHHHHHHHHHHHHHH--TCSEEEEECCSEEECC-CC--CSC---CE-------
T ss_pred ------------------------cchhHHHHHHHHHHHHHh--CCCCEEEEeCCcccCC-CC--Ccc---eE-------
Confidence 116799999999999976 5899999999998322 11 110 00
Q ss_pred HHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 336 GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 336 ~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
..+...+. .++++++|+|++++.++.++.. .+++|+++++
T Consensus 165 -------~~~~~~~~--~~~i~~~Dva~~~~~~~~~~~~-------~g~~~~i~~g 204 (206)
T 1hdo_A 165 -------VTLDGRGP--SRVISKHDLGHFMLRCLTTDEY-------DGHSTYPSHQ 204 (206)
T ss_dssp -------EESSSCSS--CSEEEHHHHHHHHHHTTSCSTT-------TTCEEEEECC
T ss_pred -------ecccCCCC--CCccCHHHHHHHHHHHhcCccc-------cccceeeecc
Confidence 00001111 4899999999999999887543 4789999986
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=204.91 Aligned_cols=230 Identities=15% Similarity=0.058 Sum_probs=163.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-C-CCCCCCCCCH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-S-AQAPDLGLSP 174 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-D-l~~~~lgl~~ 174 (545)
+|+|+|||||||||++|++.|++.|+ +|++++|+..... .+.+.. ....+++. | ++ +.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~~~-~~~l~~----------~~~v~~v~~D~l~------d~ 64 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH---HVRAQVHSLKGLI-AEELQA----------IPNVTLFQGPLLN------NV 64 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCSCSHH-HHHHHT----------STTEEEEESCCTT------CH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCCChhh-HHHHhh----------cCCcEEEECCccC------CH
Confidence 58899999999999999999999875 5888999765321 111110 01223333 7 76 67
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccC-CceEEEEeccccccCCCcccccccCCCCCH
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKN-LKMFTYVSTAFSNSYRKNIEEIIYKAHTHY 253 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~ 253 (545)
+++..+++++|+|||+++.... ..|+.+ ++++++|++. + +++|||+||.++.....
T Consensus 65 ~~l~~~~~~~d~Vi~~a~~~~~--------~~~~~~-~~l~~aa~~~-g~v~~~V~~SS~~~~~~~~------------- 121 (352)
T 1xgk_A 65 PLMDTLFEGAHLAFINTTSQAG--------DEIAIG-KDLADAAKRA-GTIQHYIYSSMPDHSLYGP------------- 121 (352)
T ss_dssp HHHHHHHTTCSEEEECCCSTTS--------CHHHHH-HHHHHHHHHH-SCCSEEEEEECCCGGGTSS-------------
T ss_pred HHHHHHHhcCCEEEEcCCCCCc--------HHHHHH-HHHHHHHHHc-CCccEEEEeCCccccccCC-------------
Confidence 8899999999999999975421 346766 9999999997 6 89999999986311000
Q ss_pred HHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHH
Q psy16252 254 SELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGL 333 (545)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~ 333 (545)
..++.|+.||+.+|+++++. +++++|+||+ +||+...... ..+...
T Consensus 122 -------------------------~~~~~y~~sK~~~E~~~~~~--gi~~~ivrpg-~~g~~~~~~~---~~~~~~--- 167 (352)
T 1xgk_A 122 -------------------------WPAVPMWAPKFTVENYVRQL--GLPSTFVYAG-IYNNNFTSLP---YPLFQM--- 167 (352)
T ss_dssp -------------------------CCCCTTTHHHHHHHHHHHTS--SSCEEEEEEC-EEGGGCBSSS---CSSCBE---
T ss_pred -------------------------CCCccHHHHHHHHHHHHHHc--CCCEEEEecc-eecCCchhcc---cccccc---
Confidence 11267999999999999884 8999999987 5776432110 001000
Q ss_pred HHHHhcCcee-EEecCCCCcccceeh-HHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhcc
Q psy16252 334 VTGAQAGVVR-TFLVDPDVKADIVPA-DLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVK 411 (545)
Q Consensus 334 ~~~~~~g~~~-~~~~~~~~~~~~v~v-ddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~ 411 (545)
.....|... .++++++...+++++ +|+|++++.++.++.. ...+++||+++ .++|+.|+++.+.+..|+
T Consensus 168 -~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~-----~~~g~~~~l~~---~~~s~~e~~~~i~~~~G~ 238 (352)
T 1xgk_A 168 -ELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQ-----KWNGHRIALTF---ETLSPVQVCAAFSRALNR 238 (352)
T ss_dssp -EECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHH-----HHTTCEEEECS---EEECHHHHHHHHHHHHTS
T ss_pred -cccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCch-----hhCCeEEEEec---CCCCHHHHHHHHHHHHCC
Confidence 001233332 245667889999999 9999999999876421 01378999995 479999999999999887
Q ss_pred c
Q psy16252 412 I 412 (545)
Q Consensus 412 ~ 412 (545)
.
T Consensus 239 ~ 239 (352)
T 1xgk_A 239 R 239 (352)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-22 Score=195.55 Aligned_cols=239 Identities=15% Similarity=0.113 Sum_probs=164.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|+|||||||+|+++++.|++.|+ +|++++|+.....+. +... ...+.....+++. |+. +++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~~~~~-~~~~-----~~~~~~~~~~~~~~D~~------d~~ 68 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH---PTYVLFRPEVVSNID-KVQM-----LLYFKQLGAKLIEASLD------DHQ 68 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCSCCSSCHH-HHHH-----HHHHHTTTCEEECCCSS------CHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC---cEEEEECCCcccchh-HHHH-----HHHHHhCCeEEEeCCCC------CHH
Confidence 47899999999999999999999875 688999986543221 1111 0111223444555 877 678
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSE 255 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~ 255 (545)
++..+++++|+|||+|+..... .|+.++.+++++|++.+++++||+ |+ +..... .. + .+.
T Consensus 69 ~l~~~~~~~d~vi~~a~~~~~~--------~~~~~~~~l~~aa~~~g~v~~~v~-S~-~g~~~~-~~-~----~~~---- 128 (313)
T 1qyd_A 69 RLVDALKQVDVVISALAGGVLS--------HHILEQLKLVEAIKEAGNIKRFLP-SE-FGMDPD-IM-E----HAL---- 128 (313)
T ss_dssp HHHHHHTTCSEEEECCCCSSSS--------TTTTTHHHHHHHHHHSCCCSEEEC-SC-CSSCTT-SC-C----CCC----
T ss_pred HHHHHHhCCCEEEECCccccch--------hhHHHHHHHHHHHHhcCCCceEEe-cC-CcCCcc-cc-c----cCC----
Confidence 8999999999999999976432 378889999999999733999985 43 221111 00 0 000
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHH
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVT 335 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~ 335 (545)
....+.| .+|+.+|+++++ .+++++++||+.++|........... .
T Consensus 129 ----------------------~p~~~~y-~sK~~~e~~~~~--~g~~~~ilrp~~~~~~~~~~~~~~~~---------~ 174 (313)
T 1qyd_A 129 ----------------------QPGSITF-IDKRKVRRAIEA--ASIPYTYVSSNMFAGYFAGSLAQLDG---------H 174 (313)
T ss_dssp ----------------------SSTTHHH-HHHHHHHHHHHH--TTCCBCEEECCEEHHHHTTTSSCTTC---------C
T ss_pred ----------------------CCCcchH-HHHHHHHHHHHh--cCCCeEEEEeceeccccccccccccc---------c
Confidence 0112568 999999999987 58999999999998863221111000 0
Q ss_pred HHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 336 GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 336 ~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
....+....++++++...++++++|+|++++.++.++.. .+++|+++++. +.+|+.|+++.+.+..|+.
T Consensus 175 ~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~-------~~~~~~~~g~~-~~~s~~e~~~~~~~~~g~~ 243 (313)
T 1qyd_A 175 MMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT-------LNKTMYIRPPM-NILSQKEVIQIWERLSEQN 243 (313)
T ss_dssp SSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG-------SSSEEECCCGG-GEEEHHHHHHHHHHHHTCC
T ss_pred ccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhCccc-------CCceEEEeCCC-CccCHHHHHHHHHHhcCCC
Confidence 001122223456778899999999999999999887654 36788877531 5899999999999998864
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=193.82 Aligned_cols=234 Identities=15% Similarity=0.124 Sum_probs=161.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.++|+|||||||+|+++++.|++.|+ .|++++|+.......++... ...+.....+++. |+. +.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~~~~~~~~~~~~-----~~~l~~~~v~~v~~D~~------d~~ 69 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH---PTFLLVRESTASSNSEKAQL-----LESFKASGANIVHGSID------DHA 69 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCCCCTTTTHHHHHH-----HHHHHTTTCEEECCCTT------CHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC---CEEEEECCcccccCHHHHHH-----HHHHHhCCCEEEEeccC------CHH
Confidence 47899999999999999999999875 58899998654311111111 1112223444555 777 678
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSE 255 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~ 255 (545)
.+..+++++|+|||+|+... +.++.+++++|++++++++||+ |+.+... +|.. +..
T Consensus 70 ~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S~~g~~~-----~~~~---~~~--- 125 (308)
T 1qyc_A 70 SLVEAVKNVDVVISTVGSLQ------------IESQVNIIKAIKEVGTVKRFFP-SEFGNDV-----DNVH---AVE--- 125 (308)
T ss_dssp HHHHHHHTCSEEEECCCGGG------------SGGGHHHHHHHHHHCCCSEEEC-SCCSSCT-----TSCC---CCT---
T ss_pred HHHHHHcCCCEEEECCcchh------------hhhHHHHHHHHHhcCCCceEee-cccccCc-----cccc---cCC---
Confidence 89999999999999998643 4567899999999733999984 4322111 1100 000
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHH
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVT 335 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~ 335 (545)
...+.| .+|+.+|+++++ .+++++++||+.++|.......... .
T Consensus 126 -----------------------p~~~~y-~sK~~~e~~~~~--~~~~~~~~r~~~~~~~~~~~~~~~~----------~ 169 (308)
T 1qyc_A 126 -----------------------PAKSVF-EVKAKVRRAIEA--EGIPYTYVSSNCFAGYFLRSLAQAG----------L 169 (308)
T ss_dssp -----------------------THHHHH-HHHHHHHHHHHH--HTCCBEEEECCEEHHHHTTTTTCTT----------C
T ss_pred -----------------------cchhHH-HHHHHHHHHHHh--cCCCeEEEEeceecccccccccccc----------c
Confidence 001468 999999999987 4799999999999886322111000 0
Q ss_pred HHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 336 GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 336 ~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
....+....++++++...++++++|+|++++.++..+.. .+++|+++++. +.+|+.|+++.+.+..|+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~-------~~~~~~~~g~~-~~~s~~e~~~~~~~~~g~~ 238 (308)
T 1qyc_A 170 TAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRT-------LNKTLYLRLPA-NTLSLNELVALWEKKIDKT 238 (308)
T ss_dssp SSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGG-------TTEEEECCCGG-GEEEHHHHHHHHHHHTTSC
T ss_pred cCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhCccc-------cCeEEEEeCCC-CccCHHHHHHHHHHHhCCC
Confidence 001122334567888999999999999999999877654 36788886431 5899999999999998864
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=190.88 Aligned_cols=234 Identities=17% Similarity=0.128 Sum_probs=159.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC-CCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK-KNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
+++|+|||||||||+++++.|++.|+ .|++++|+. ....+.++.... ..+.....+++. |+. +.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~~~~~~~~~~~~-----~~l~~~~v~~v~~D~~------d~ 67 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN---PTYALVRKTITAANPETKEELI-----DNYQSLGVILLEGDIN------DH 67 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC---CEEEEECCSCCSSCHHHHHHHH-----HHHHHTTCEEEECCTT------CH
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC---cEEEEECCCcccCChHHHHHHH-----HHHHhCCCEEEEeCCC------CH
Confidence 47899999999999999999999975 588899986 222220222111 111223444555 887 67
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHH
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYS 254 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~ 254 (545)
+.+..+++++|+|||+|+... +.++.+++++|++++++++||+ |+ + +.. .+|.....|
T Consensus 68 ~~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S~-~--g~~--~~~~~~~~p---- 125 (307)
T 2gas_A 68 ETLVKAIKQVDIVICAAGRLL------------IEDQVKIIKAIKEAGNVKKFFP-SE-F--GLD--VDRHDAVEP---- 125 (307)
T ss_dssp HHHHHHHTTCSEEEECSSSSC------------GGGHHHHHHHHHHHCCCSEEEC-SC-C--SSC--TTSCCCCTT----
T ss_pred HHHHHHHhCCCEEEECCcccc------------cccHHHHHHHHHhcCCceEEee-cc-c--ccC--cccccCCCc----
Confidence 889999999999999999754 4567899999998733999983 32 2 211 011000000
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHH
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLV 334 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~ 334 (545)
..+.| .+|+.+|+++++ .+++++++|||.+++...... ....
T Consensus 126 -------------------------~~~~y-~sK~~~e~~~~~--~~i~~~~lrp~~~~~~~~~~~---~~~~------- 167 (307)
T 2gas_A 126 -------------------------VRQVF-EEKASIRRVIEA--EGVPYTYLCCHAFTGYFLRNL---AQLD------- 167 (307)
T ss_dssp -------------------------HHHHH-HHHHHHHHHHHH--HTCCBEEEECCEETTTTGGGT---TCTT-------
T ss_pred -------------------------chhHH-HHHHHHHHHHHH--cCCCeEEEEcceeeccccccc---cccc-------
Confidence 01578 999999999987 479999999999987532110 0000
Q ss_pred HHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 335 TGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 335 ~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
.....+....++++++...++++++|+|++++.++..+.. .+++|++.++. +.+|+.|+++.+.+..|+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~-------~~~~~~~~~~~-~~~s~~e~~~~~~~~~g~~ 237 (307)
T 2gas_A 168 ATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNT-------LNKAVHIRLPK-NYLTQNEVIALWEKKIGKT 237 (307)
T ss_dssp CSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTCGGG-------TTEEEECCCGG-GEEEHHHHHHHHHHHHTSC
T ss_pred cccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcCccc-------cCceEEEeCCC-CcCCHHHHHHHHHHHhCCC
Confidence 0001122223567788899999999999999999876543 36777776431 5899999999999998864
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=192.54 Aligned_cols=224 Identities=17% Similarity=0.113 Sum_probs=158.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
++|+||||||++|+++++.|++.|+ +|++++|+.... .+.+.. +.....+++. |+. +.++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~~~~--~~~~~~--------l~~~~v~~v~~Dl~------d~~~ 72 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGH---PTYVFTRPNSSK--TTLLDE--------FQSLGAIIVKGELD------EHEK 72 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTC---CEEEEECTTCSC--HHHHHH--------HHHTTCEEEECCTT------CHHH
T ss_pred CeEEEECCCchHHHHHHHHHHHCCC---cEEEEECCCCch--hhHHHH--------hhcCCCEEEEecCC------CHHH
Confidence 5899999999999999999999875 688999986421 111211 1122444555 887 6788
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHHH
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSEL 256 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~ 256 (545)
+..+++++|+|||+|+... +.++.+++++|++.+++++||+ |+. +.. .+|. .+..
T Consensus 73 l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S~~---g~~--~~~~---~~~~---- 127 (318)
T 2r6j_A 73 LVELMKKVDVVISALAFPQ------------ILDQFKILEAIKVAGNIKRFLP-SDF---GVE--EDRI---NALP---- 127 (318)
T ss_dssp HHHHHTTCSEEEECCCGGG------------STTHHHHHHHHHHHCCCCEEEC-SCC---SSC--TTTC---CCCH----
T ss_pred HHHHHcCCCEEEECCchhh------------hHHHHHHHHHHHhcCCCCEEEe-ecc---ccC--cccc---cCCC----
Confidence 9999999999999998642 5567899999999733999985 432 211 0110 0000
Q ss_pred HHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHHH
Q psy16252 257 LKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTG 336 (545)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~ 336 (545)
| ..+.| .+|+.+|+++++ .+++++++||+.+++... ..+...
T Consensus 128 -----------------p-----~~~~y-~sK~~~e~~~~~--~~~~~~~lr~~~~~~~~~-------------~~~~~~ 169 (318)
T 2r6j_A 128 -----------------P-----FEALI-ERKRMIRRAIEE--ANIPYTYVSANCFASYFI-------------NYLLRP 169 (318)
T ss_dssp -----------------H-----HHHHH-HHHHHHHHHHHH--TTCCBEEEECCEEHHHHH-------------HHHHCT
T ss_pred -----------------C-----cchhH-HHHHHHHHHHHh--cCCCeEEEEcceehhhhh-------------hhhccc
Confidence 0 00468 999999999987 579999999998876310 111111
Q ss_pred HhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec-CCCCcccHHHHHHHHHHhhccc
Q psy16252 337 AQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN-SKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 337 ~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~-~~~~~~t~~el~~~l~~~~~~~ 412 (545)
...+....++++++...++++++|+|++++.++..+.. .+++|++++ + +.+|+.|+++.+.+..|+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~-------~~~~~~~~g~~--~~~s~~e~~~~~~~~~g~~ 237 (318)
T 2r6j_A 170 YDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRA-------LNRVVIYRPST--NIITQLELISRWEKKIGKK 237 (318)
T ss_dssp TCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTCGGG-------TTEEEECCCGG--GEEEHHHHHHHHHHHHTCC
T ss_pred cCCCCceEEecCCCceeeEeeHHHHHHHHHHHhcCccc-------cCeEEEecCCC--CccCHHHHHHHHHHHhCCC
Confidence 11223334567788899999999999999999877643 357788764 4 6899999999999998864
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=192.58 Aligned_cols=228 Identities=13% Similarity=0.132 Sum_probs=160.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC-CCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK-KNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.|+|+|||||||+|+++++.|++.|+ +|++++|+. ..... ++... ...+....++++. |+. +.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~~~~~-~~~~~-----l~~~~~~~v~~v~~D~~------d~ 68 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSH---PTFIYARPLTPDSTP-SSVQL-----REEFRSMGVTIIEGEME------EH 68 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTC---CEEEEECCCCTTCCH-HHHHH-----HHHHHHTTCEEEECCTT------CH
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCC---cEEEEECCcccccCh-HHHHH-----HHHhhcCCcEEEEecCC------CH
Confidence 57899999999999999999999875 688999986 32221 11111 0111223445555 887 67
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccC-CceEEEEeccccccCCCcccccccCCCCCH
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKN-LKMFTYVSTAFSNSYRKNIEEIIYKAHTHY 253 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~ 253 (545)
+++..+++++|+|||+|+... +.++.+++++|++. + +++||+ |.+ +.. .+|.. +..
T Consensus 69 ~~l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~-g~v~~~v~--S~~--g~~--~~~~~---~~~- 125 (321)
T 3c1o_A 69 EKMVSVLKQVDIVISALPFPM------------ISSQIHIINAIKAA-GNIKRFLP--SDF--GCE--EDRIK---PLP- 125 (321)
T ss_dssp HHHHHHHTTCSEEEECCCGGG------------SGGGHHHHHHHHHH-CCCCEEEC--SCC--SSC--GGGCC---CCH-
T ss_pred HHHHHHHcCCCEEEECCCccc------------hhhHHHHHHHHHHh-CCccEEec--ccc--ccC--ccccc---cCC-
Confidence 889999999999999998643 56778999999997 6 999983 332 211 01110 000
Q ss_pred HHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHH
Q psy16252 254 SELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGL 333 (545)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~ 333 (545)
+ ..+.| .+|+.+|+++++ .+++++++||+.+++... ..+
T Consensus 126 --------------------p-----~~~~y-~sK~~~e~~~~~--~~~~~~~lrp~~~~~~~~-------------~~~ 164 (321)
T 3c1o_A 126 --------------------P-----FESVL-EKKRIIRRAIEA--AALPYTYVSANCFGAYFV-------------NYL 164 (321)
T ss_dssp --------------------H-----HHHHH-HHHHHHHHHHHH--HTCCBEEEECCEEHHHHH-------------HHH
T ss_pred --------------------C-----cchHH-HHHHHHHHHHHH--cCCCeEEEEeceeccccc-------------ccc
Confidence 0 01569 999999999987 479999999999887421 011
Q ss_pred HH---HHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec-CCCCcccHHHHHHHHHHhh
Q psy16252 334 VT---GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN-SKDNPLTWGEFITKSLKEG 409 (545)
Q Consensus 334 ~~---~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~-~~~~~~t~~el~~~l~~~~ 409 (545)
.. ....+....++++++...++++++|+|++++.++..+.. .+++|++++ + +.+|+.|+++.+.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~-------~g~~~~~~g~~--~~~t~~e~~~~~~~~~ 235 (321)
T 3c1o_A 165 LHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRC-------CNRIVIYRPPK--NIISQNELISLWEAKS 235 (321)
T ss_dssp HCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHHCGGG-------TTEEEECCCGG--GEEEHHHHHHHHHHHH
T ss_pred ccccccccccCceEEecCCCcceeEeeHHHHHHHHHHHHhCccc-------cCeEEEEeCCC--CcccHHHHHHHHHHHc
Confidence 10 001222233567788899999999999999999887654 367788874 4 6899999999999998
Q ss_pred ccc
Q psy16252 410 VKI 412 (545)
Q Consensus 410 ~~~ 412 (545)
|+.
T Consensus 236 g~~ 238 (321)
T 3c1o_A 236 GLS 238 (321)
T ss_dssp TSC
T ss_pred CCc
Confidence 864
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=188.01 Aligned_cols=233 Identities=15% Similarity=0.062 Sum_probs=152.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++++++|++.|+ +|+++.|+...... . +. |++ +.++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~--------------------~-~~~D~~------~~~~ 51 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGH---TVIGIDRGQADIEA--------------------D-LSTPGG------RETA 51 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSSSEEC--------------------C-TTSHHH------HHHH
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEeCChhHccc--------------------c-ccCCcc------cHHH
Confidence 5899999999999999999999875 68999997543210 0 11 444 4455
Q ss_pred HHHHhc----CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCc---ccccc
Q psy16252 177 KRLVTS----KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKN---IEEII 246 (545)
Q Consensus 177 ~~~l~~----~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~---i~E~~ 246 (545)
++.+++ ++|+|||+||......+++..+++|+.|+.++++++... .+.++||++||..++..... ..|..
T Consensus 52 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~ 131 (255)
T 2dkn_A 52 VAAVLDRCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAM 131 (255)
T ss_dssp HHHHHHHHTTCCSEEEECCCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHH
T ss_pred HHHHHHHcCCCccEEEECCCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhh
Confidence 666665 899999999987644567888999999999999988763 24589999999988764311 11100
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCCCC
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEPIP 321 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~~~ 321 (545)
. . .+++........ .....+.|+.||+..|.+++.++ .+++++++|||.|+|+...
T Consensus 132 -----------~---~-~~~~~~~~~~~~-~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~--- 192 (255)
T 2dkn_A 132 -----------L---A-GDEARAIELAEQ-QGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQ--- 192 (255)
T ss_dssp -----------H---H-TCHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHH---
T ss_pred -----------c---c-cchhhhhhhccc-cCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhh---
Confidence 0 0 111111100000 00112689999999999998765 5899999999999886311
Q ss_pred CCccCccchHHHHHHHhcCc-eeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHH
Q psy16252 322 GWIDNLYGPTGLVTGAQAGV-VRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWG 399 (545)
Q Consensus 322 g~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~ 399 (545)
..+.....+. ...+ . + ...++++++|+|++++.++..... ...+++|++.++ ..++++
T Consensus 193 ----------~~~~~~~~~~~~~~~-~-~-~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v~gg--~~~~~~ 251 (255)
T 2dkn_A 193 ----------ASKADPRYGESTRRF-V-A-PLGRGSEPREVAEAIAFLLGPQAS-----FIHGSVLFVDGG--MDALMR 251 (255)
T ss_dssp ----------HHHHCTTTHHHHHSC-C-C-TTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT--HHHHHC
T ss_pred ----------hcccchhhHHHHHHH-H-H-HhcCCCCHHHHHHHHHHHhCCCcc-----cceeeEEEecCC--eEeeee
Confidence 0000000000 0000 0 1 334789999999999999876521 124789999987 555543
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-20 Score=180.01 Aligned_cols=237 Identities=16% Similarity=0.111 Sum_probs=165.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc-CCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT-CSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~-Dl~~~~lgl 172 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|... +..... ..+... ...++. |++
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~~------~~~~~~----~~~~~~~~~~~~~~D~~------ 74 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYGA---KVVIADIADD------HGQKVC----NNIGSPDVISFVHCDVT------ 74 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHH----HHHCCTTTEEEEECCTT------
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCChh------HHHHHH----HHhCCCCceEEEECCCC------
Confidence 5689999999999999999999999875 6888887532 111111 111111 233344 887
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc---------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF---------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~---------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~ 154 (278)
T 2bgk_A 75 KDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASI 154 (278)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeec
Confidence 6667777665 78999999996532 2567788999999999999988763 256799999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.++.... .....|+.||+..|.+++.++ .+++++++|
T Consensus 155 ~~~~~~~--------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 196 (278)
T 2bgk_A 155 SSFTAGE--------------------------------------GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVS 196 (278)
T ss_dssp GGTCCCT--------------------------------------TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred cccCCCC--------------------------------------CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEE
Confidence 8764321 012579999999999998765 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|+++....... ............ .+.....+++++|+|++++.++..... ...+++|++
T Consensus 197 Pg~v~t~~~~~~~~------~~~~~~~~~~~~-------~~~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v 258 (278)
T 2bgk_A 197 PYIVASPLLTDVFG------VDSSRVEELAHQ-------AANLKGTLLRAEDVADAVAYLAGDESK-----YVSGLNLVI 258 (278)
T ss_dssp ESCCSCCCCTTSSS------CCHHHHHHHHHH-------TCSSCSCCCCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eceecchhhhhhcc------cchhHHHHhhhc-------ccccccccCCHHHHHHHHHHHcCcccc-----cCCCCEEEE
Confidence 99999875332110 001122111111 111234589999999999998865432 124789999
Q ss_pred ecCCCCcccHHHHHHHHHHh
Q psy16252 389 VNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 389 ~~~~~~~~t~~el~~~l~~~ 408 (545)
.++ ..+++.|+++.+.+.
T Consensus 259 ~gg--~~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 259 DGG--YTRTNPAFPTALKHG 276 (278)
T ss_dssp STT--GGGCCTHHHHHSCSC
T ss_pred CCc--ccccCCccchhhhhh
Confidence 998 789999999887654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=180.75 Aligned_cols=238 Identities=14% Similarity=0.062 Sum_probs=156.5
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+|+|+||||+|+||++++++|++.|+ +|+++.|+.... +.+.. .+ .....++. |++ +.
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~~~~---~~~~~-------~~-~~~~~~~~~Dv~------~~ 63 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD---TVIGTARRTEAL---DDLVA-------AY-PDRAEAISLDVT------DG 63 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSGGGG---HHHHH-------HC-TTTEEEEECCTT------CH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHH---HHHHH-------hc-cCCceEEEeeCC------CH
Confidence 479999999999999999999999875 788888874321 11111 00 11233344 887 56
Q ss_pred HHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHH----HHHHHHHccCCceEEEEeccccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQT----MLDLAKQCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~----ll~~a~~~~~~~~~v~vSS~~v~ 236 (545)
+++..+++ ++|+|||+||.... .+.++..+++|+.|+.+ +++.+++. +..++|++||..+.
T Consensus 64 ~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~~sS~~~~ 142 (281)
T 3m1a_A 64 ERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRER-GSGSVVNISSFGGQ 142 (281)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEcCcccc
Confidence 67776665 78999999997532 35667889999999544 45555554 66899999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..|.+.+.++ .+++++++|||.
T Consensus 143 ~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~ 183 (281)
T 3m1a_A 143 LSF---------------------------------------AGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGA 183 (281)
T ss_dssp CCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC
T ss_pred CCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCc
Confidence 321 112689999999999988765 589999999999
Q ss_pred eeccCCCCCCCC-ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 312 VISTWKEPIPGW-IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 312 i~g~~~~~~~g~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
|.++...+.... ................ .........+++++|+|++++.++..... +..|++++
T Consensus 184 v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~dva~a~~~~~~~~~~--------~~~~~l~s 249 (281)
T 3m1a_A 184 FRTNLFGKGAAYFSEENPAYAEKVGPTRQ------LVQGSDGSQPGDPAKAAAAIRLALDTEKT--------PLRLALGG 249 (281)
T ss_dssp BCCTTTCCCCEEECCBCTTTHHHHHHHHH------HHHC-----CBCHHHHHHHHHHHHHSSSC--------CSEEEESH
T ss_pred cccccccccccccCCcchhhHHHhHHHHH------HHhhccCCCCCCHHHHHHHHHHHHhCCCC--------CeEEecCc
Confidence 988653322111 0111110111110000 01112234577899999999999887665 67999998
Q ss_pred CCCCcccHHHHHHHHHHhh
Q psy16252 391 SKDNPLTWGEFITKSLKEG 409 (545)
Q Consensus 391 ~~~~~~t~~el~~~l~~~~ 409 (545)
+ ......+....+.+.+
T Consensus 250 ~--~~~~i~g~~~~i~~~~ 266 (281)
T 3m1a_A 250 D--AVDFLTGHLDSVRAEL 266 (281)
T ss_dssp H--HHHHHHHHHHHHHHHH
T ss_pred h--HHHHHHHHHHHHHHHH
Confidence 7 5566666666665544
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-19 Score=169.72 Aligned_cols=222 Identities=13% Similarity=0.094 Sum_probs=153.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||||+||++++++|++.|+ +|+++.|+.. ++..... .++. ....++. |++
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~----- 70 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINAD------AANHVVD----EIQQLGGQAFACRCDIT----- 70 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESCHH------HHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEcCCHH------HHHHHHH----HHHHhCCceEEEEcCCC-----
Confidence 4679999999999999999999999875 6888888632 2222111 1111 1222333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEecccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAFS 235 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~v 235 (545)
+.++++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++.. ..+..+||++||..+
T Consensus 71 -~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~ 149 (255)
T 1fmc_A 71 -SEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAA 149 (255)
T ss_dssp -CHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhh
Confidence 5667777665 89999999997532 355678899999999999988853 125689999999877
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
+.... ....|+.||+..|.+++.++ .+++++++|||
T Consensus 150 ~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg 190 (255)
T 1fmc_A 150 ENKNI---------------------------------------NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPG 190 (255)
T ss_dssp TCCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEC
T ss_pred cCCCC---------------------------------------CCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecc
Confidence 64321 11679999999999998765 48999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|+++.... ... ..+......+. ....+++++|+|++++.++..... ...+++|++.+
T Consensus 191 ~v~t~~~~~-------~~~-~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v~g 248 (255)
T 1fmc_A 191 AILTDALKS-------VIT-PEIEQKMLQHT---------PIRRLGQPQDIANAALFLCSPAAS-----WVSGQILTVSG 248 (255)
T ss_dssp SBCSHHHHT-------TCC-HHHHHHHHHTC---------SSCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred cCcchhhhh-------ccC-hHHHHHHHhcC---------CcccCCCHHHHHHHHHHHhCCccc-----cCCCcEEEECC
Confidence 998863221 011 12222222221 123478999999999988865432 12478999998
Q ss_pred CCCCcccH
Q psy16252 391 SKDNPLTW 398 (545)
Q Consensus 391 ~~~~~~t~ 398 (545)
+ ..+|+
T Consensus 249 g--~~~s~ 254 (255)
T 1fmc_A 249 G--GVQEL 254 (255)
T ss_dssp T--SCCCC
T ss_pred c--eeccC
Confidence 8 55553
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.2e-19 Score=170.76 Aligned_cols=243 Identities=12% Similarity=0.075 Sum_probs=149.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHH-hhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAI-SLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~-~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+++|+|+||||+|+||+++++.|++.|+ +|+++.|+. +++......+.. ........++. |++
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~------ 68 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGA---KVTITGRHA------ERLEETRQQILAAGVSEQNVNSVVADVT------ 68 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHHHTTCCGGGEEEEECCTT------
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHHHHHhcccCCCceeEEecccC------
Confidence 4579999999999999999999999875 688888863 222221111100 00011223333 887
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc-----------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEe
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR-----------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVS 231 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vS 231 (545)
+.+++..+++ ++|+||||||... ..+.++..+++|+.|+.++++++... .+ .++|++|
T Consensus 69 ~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~is 147 (278)
T 1spx_A 69 TDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNIS 147 (278)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEe
Confidence 5667777665 8999999999753 23456778999999999999988653 13 7999999
Q ss_pred cccc-ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 232 TAFS-NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 232 S~~v-~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
|..+ .... .....|+.||+..|.+.+.++ .+++++
T Consensus 148 S~~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 188 (278)
T 1spx_A 148 SIASGLHAT---------------------------------------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVN 188 (278)
T ss_dssp CTTSSSSCC---------------------------------------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred cccccccCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHHHhcCcEEE
Confidence 9876 4321 011579999999999987764 589999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCC-CCCC
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDP-SCLP 384 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~-~~~~ 384 (545)
++|||.|.++.......-................. . + ...+++++|+|++++.++..... . ..++
T Consensus 189 ~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----~---p--~~~~~~~~dvA~~v~~l~s~~~~-----~~~tG~ 254 (278)
T 1spx_A 189 SISPGLVATGFGSAMGMPEETSKKFYSTMATMKEC----V---P--AGVMGQPQDIAEVIAFLADRKTS-----SYIIGH 254 (278)
T ss_dssp EEEECCBCCCC--------------HHHHHHHHHH----C---T--TSSCBCHHHHHHHHHHHHCHHHH-----TTCCSC
T ss_pred EEecCcccCccccccccCchhhhhhhHHHHHHHhc----C---C--CcCCCCHHHHHHHHHHHcCcccc-----CcccCc
Confidence 99999998864221000000000000001111110 0 1 12478999999999988765432 0 1478
Q ss_pred EEEeecCCCCcccHHHHHHHHHHh
Q psy16252 385 IYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 385 vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
++++.++ ..+++.++++.+.+.
T Consensus 255 ~~~vdgG--~~~~~~~~~~~~~~~ 276 (278)
T 1spx_A 255 QLVVDGG--SSLIMGLHCQDFAKL 276 (278)
T ss_dssp EEEESTT--GGGC-----------
T ss_pred EEEECCC--cccccCcccccHHHH
Confidence 9999988 789999999887764
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-19 Score=165.73 Aligned_cols=201 Identities=17% Similarity=0.064 Sum_probs=138.5
Q ss_pred cEEEEeccccccchHHHHHHH-hhCCCcCEEEEEecCCC-CCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 98 AEILMTGATGFLGKLLIEKLL-RSFPRVKTIYVIVRAKK-NQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll-~~g~~v~~V~~l~R~~~-~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
|+|+||||||+||++++++|+ +.|+ +|+++.|+.. .... +. . ......++. |++ +.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~---~V~~~~r~~~~~~~~---~~---~------~~~~~~~~~~D~~------d~ 64 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM---HITLYGRQLKTRIPP---EI---I------DHERVTVIEGSFQ------NP 64 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC---EEEEEESSHHHHSCH---HH---H------TSTTEEEEECCTT------CH
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc---eEEEEecCccccchh---hc---c------CCCceEEEECCCC------CH
Confidence 579999999999999999999 7765 7899999743 2111 10 0 111233344 887 77
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHH
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYS 254 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~ 254 (545)
+++.++++++|+|||+||.. |+. ++++++++++. ++++||++||.+++.......
T Consensus 65 ~~~~~~~~~~d~vv~~ag~~------------n~~-~~~~~~~~~~~-~~~~iv~iSs~~~~~~~~~~~----------- 119 (221)
T 3r6d_A 65 GXLEQAVTNAEVVFVGAMES------------GSD-MASIVKALSRX-NIRRVIGVSMAGLSGEFPVAL----------- 119 (221)
T ss_dssp HHHHHHHTTCSEEEESCCCC------------HHH-HHHHHHHHHHT-TCCEEEEEEETTTTSCSCHHH-----------
T ss_pred HHHHHHHcCCCEEEEcCCCC------------Chh-HHHHHHHHHhc-CCCeEEEEeeceecCCCCccc-----------
Confidence 88999999999999999964 344 89999999986 789999999998876421000
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHH
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLV 334 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~ 334 (545)
..| ......+.|+.+|..+|.++++ .+++++++|||.|+++...
T Consensus 120 -----~~~-------------~~~~~~~~y~~~K~~~e~~~~~--~~i~~~~vrpg~v~~~~~~---------------- 163 (221)
T 3r6d_A 120 -----EKW-------------TFDNLPISYVQGERQARNVLRE--SNLNYTILRLTWLYNDPEX---------------- 163 (221)
T ss_dssp -----HHH-------------HHHTSCHHHHHHHHHHHHHHHH--SCSEEEEEEECEEECCTTC----------------
T ss_pred -----ccc-------------cccccccHHHHHHHHHHHHHHh--CCCCEEEEechhhcCCCCC----------------
Confidence 000 0001123799999999999987 5899999999999886211
Q ss_pred HHHhcCceeEEecCCCCcccceehHHHHHHHHhcc--cccccccCCCCCCCCEEEeecC
Q psy16252 335 TGAQAGVVRTFLVDPDVKADIVPADLVVNALICAP--WNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 335 ~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~--~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+..............+++.+|||++++.++ ..+.. ..++.+.++++
T Consensus 164 -----~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~------~~~~~~~i~~~ 211 (221)
T 3r6d_A 164 -----TDYELIPEGAQFNDAQVSREAVVKAIFDILHAADETP------FHRTSIGVGEP 211 (221)
T ss_dssp -----CCCEEECTTSCCCCCEEEHHHHHHHHHHHHTCSCCGG------GTTEEEEEECT
T ss_pred -----cceeeccCCccCCCceeeHHHHHHHHHHHHHhcChhh------hhcceeeecCC
Confidence 001111111111223899999999999999 66543 13567777765
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=165.71 Aligned_cols=216 Identities=15% Similarity=0.133 Sum_probs=150.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++...... . ...+++. |++ +
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~~~------~~~~~~~~----~--~~~~~~~~D~~------~ 63 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGA---KVVAVTRTNS------DLVSLAKE----C--PGIEPVCVDLG------D 63 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHH----S--TTCEEEECCTT------C
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHh----c--cCCCcEEecCC------C
Confidence 4579999999999999999999999875 6888888632 22211110 0 1223334 877 6
Q ss_pred HHHHHHHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cC-CceEEEEeccccccCC
Q psy16252 174 PDDKRLVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KN-LKMFTYVSTAFSNSYR 239 (545)
Q Consensus 174 ~~~~~~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~-~~~~v~vSS~~v~~~~ 239 (545)
.+++.++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..+||++||..++...
T Consensus 64 ~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~ 143 (244)
T 1cyd_A 64 WDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF 143 (244)
T ss_dssp HHHHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC
Confidence 677888776 48999999996432 3556788999999999999887653 13 5799999999776432
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeec
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIS 314 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g 314 (545)
. ....|+.||+..|.+++.++ .+++++++|||.|++
T Consensus 144 ~---------------------------------------~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t 184 (244)
T 1cyd_A 144 P---------------------------------------NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLT 184 (244)
T ss_dssp T---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTT
T ss_pred C---------------------------------------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccC
Confidence 1 11579999999999998764 589999999999988
Q ss_pred cCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 315 TWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+..... .....++..+..+ ....++++++|+|++++.++..... ...++.+++.++
T Consensus 185 ~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v~gG 240 (244)
T 1cyd_A 185 DMGKKV-------SADPEFARKLKER---------HPLRKFAEVEDVVNSILFLLSDRSA-----STSGGGILVDAG 240 (244)
T ss_dssp HHHHHH-------TCCHHHHHHHHHH---------STTSSCBCHHHHHHHHHHHHSGGGT-----TCCSSEEEESTT
T ss_pred cccccc-------ccCHHHHHHHHhc---------CCccCCCCHHHHHHHHHHHhCchhh-----cccCCEEEECCC
Confidence 632110 0001122222211 1235789999999999998875432 124678888765
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.9e-19 Score=167.33 Aligned_cols=202 Identities=11% Similarity=0.033 Sum_probs=134.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
..|+||||||||+||+++++.|++.|. .+|+++.|+...... +......++. |++ +.
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~--~~V~~~~R~~~~~~~--------------~~~~~~~~~~~Dl~------d~ 79 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQT--IKQTLFARQPAKIHK--------------PYPTNSQIIMGDVL------NH 79 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTT--EEEEEEESSGGGSCS--------------SCCTTEEEEECCTT------CH
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCC--ceEEEEEcChhhhcc--------------cccCCcEEEEecCC------CH
Confidence 358999999999999999999999861 378999997543211 0111223333 877 77
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHH
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYS 254 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~ 254 (545)
+++.++++++|+|||+|+..... ..+.++++++++. ++++||++||.++++...... .+
T Consensus 80 ~~~~~~~~~~D~vv~~a~~~~~~-----------~~~~~~~~~~~~~-~~~~iV~iSS~~~~~~~~~~~-----~~---- 138 (236)
T 3qvo_A 80 AALKQAMQGQDIVYANLTGEDLD-----------IQANSVIAAMKAC-DVKRLIFVLSLGIYDEVPGKF-----VE---- 138 (236)
T ss_dssp HHHHHHHTTCSEEEEECCSTTHH-----------HHHHHHHHHHHHT-TCCEEEEECCCCC-------------------
T ss_pred HHHHHHhcCCCEEEEcCCCCchh-----------HHHHHHHHHHHHc-CCCEEEEEecceecCCCCccc-----cc----
Confidence 89999999999999999864321 3467899999987 789999999998876532100 00
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHH
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLV 334 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~ 334 (545)
.+ ...+..+...|..+|..+.. .+++++++|||.|+++.....
T Consensus 139 ---------~~------------~~~~~~~~~~~~~~~~~l~~--~gi~~~~vrPg~i~~~~~~~~-------------- 181 (236)
T 3qvo_A 139 ---------WN------------NAVIGEPLKPFRRAADAIEA--SGLEYTILRPAWLTDEDIIDY-------------- 181 (236)
T ss_dssp ---------------------------CGGGHHHHHHHHHHHT--SCSEEEEEEECEEECCSCCCC--------------
T ss_pred ---------ch------------hhcccchHHHHHHHHHHHHH--CCCCEEEEeCCcccCCCCcce--------------
Confidence 00 00112344455566777655 589999999999998632210
Q ss_pred HHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 335 TGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 335 ~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
............+++++|||++++.++..+.. ..+++|+++++
T Consensus 182 --------~~~~~~~~~~~~~i~~~DvA~~i~~ll~~~~~------~~g~~~~i~~~ 224 (236)
T 3qvo_A 182 --------ELTSRNEPFKGTIVSRKSVAALITDIIDKPEK------HIGENIGINQP 224 (236)
T ss_dssp --------EEECTTSCCSCSEEEHHHHHHHHHHHHHSTTT------TTTEEEEEECS
T ss_pred --------EEeccCCCCCCcEECHHHHHHHHHHHHcCccc------ccCeeEEecCC
Confidence 00111111123589999999999999987662 24789999987
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=166.66 Aligned_cols=185 Identities=12% Similarity=0.110 Sum_probs=137.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+||||||+||++++++|+++ +|+++.|+. +++..... .+.. .++. |++ +.++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~-----~V~~~~r~~------~~~~~~~~----~~~~---~~~~~D~~------~~~~ 56 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH-----DLLLSGRRA------GALAELAR----EVGA---RALPADLA------DELE 56 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS-----EEEEECSCH------HHHHHHHH----HHTC---EECCCCTT------SHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC-----CEEEEECCH------HHHHHHHH----hccC---cEEEeeCC------CHHH
Confidence 57999999999999999999885 688888863 22222111 1111 3344 887 6778
Q ss_pred HHHHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccc
Q psy16252 177 KRLVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEII 246 (545)
Q Consensus 177 ~~~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~ 246 (545)
+..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++++. +..+||++||..++....
T Consensus 57 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~~~~~~~~------ 129 (207)
T 2yut_A 57 AKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAYPRYVQVP------ 129 (207)
T ss_dssp HHHHHHHHCSEEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCCHHHHSST------
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcChhhccCCC------
Confidence 888887 89999999997532 2456788999999999999999654 668999999997763211
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCCCC
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEPIP 321 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~~~ 321 (545)
....|+.||+..|.+++.++ .+++++++|||.++++...
T Consensus 130 ---------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~--- 173 (207)
T 2yut_A 130 ---------------------------------GFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA--- 173 (207)
T ss_dssp ---------------------------------TBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG---
T ss_pred ---------------------------------CcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc---
Confidence 11689999999999998765 5899999999999875200
Q ss_pred CCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 322 GWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 322 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
+.+.....+++++|+|++++.++..+..
T Consensus 174 -------------------------~~~~~~~~~~~~~dva~~~~~~~~~~~~ 201 (207)
T 2yut_A 174 -------------------------PLGGPPKGALSPEEAARKVLEGLFREPV 201 (207)
T ss_dssp -------------------------GGTSCCTTCBCHHHHHHHHHHHHC--CC
T ss_pred -------------------------ccCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 0112236789999999999999876554
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=172.66 Aligned_cols=240 Identities=11% Similarity=0.014 Sum_probs=159.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++......+-.. ......++. |++ +
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G~---~V~~~~r~~~------~~~~~~~~l~~~-~~~~~~~~~~Dl~------~ 87 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLGA---QCVIASRKMD------VLKATAEQISSQ-TGNKVHAIQCDVR------D 87 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHHHH-HSSCEEEEECCTT------C
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHHh-cCCceEEEEeCCC------C
Confidence 6789999999999999999999999875 6888888632 222211111000 011233444 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v 235 (545)
.+++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..+||++||.++
T Consensus 88 ~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~ 167 (302)
T 1w6u_A 88 PDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYA 167 (302)
T ss_dssp HHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccc
Confidence 666766665 45999999996421 3557788999999999998887642 24579999999976
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..|.+++.++ .+++++++|||
T Consensus 168 ~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg 208 (302)
T 1w6u_A 168 ETGS---------------------------------------GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPG 208 (302)
T ss_dssp HHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ccCC---------------------------------------CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeec
Confidence 5321 112679999999999998765 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|+++.... ..............+. ....+++++|+|++++.++..... ...+++|++.+
T Consensus 209 ~v~t~~~~~------~~~~~~~~~~~~~~~~---------p~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v~g 268 (302)
T 1w6u_A 209 PIKTKGAFS------RLDPTGTFEKEMIGRI---------PCGRLGTVEELANLAAFLCSDYAS-----WINGAVIKFDG 268 (302)
T ss_dssp CBCC------------CCTTSHHHHHHHTTC---------TTSSCBCHHHHHHHHHHHTSGGGT-----TCCSCEEEEST
T ss_pred cCCCcchhh------hcccchhhHHHHHhcC---------CcCCCCCHHHHHHHHHHHcCCccc-----ccCCCEEEECC
Confidence 998862110 0000001111111111 112478899999999988765332 12478999998
Q ss_pred CCCCcccHHHHHHHHHHhhcc
Q psy16252 391 SKDNPLTWGEFITKSLKEGVK 411 (545)
Q Consensus 391 ~~~~~~t~~el~~~l~~~~~~ 411 (545)
+ ..+++.++++.+.+..++
T Consensus 269 g--~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 269 G--EEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp T--HHHHHHSTTGGGGGCCHH
T ss_pred C--eeeccCCccccchhhccc
Confidence 8 677888877766655443
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=164.93 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=136.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+||||||+||++++++|+ +|+ +|+++.|+... +. |++ +.++
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~---~V~~~~r~~~~-------------------------~~~D~~------~~~~ 48 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKA---EVITAGRHSGD-------------------------VTVDIT------NIDS 48 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTS---EEEEEESSSSS-------------------------EECCTT------CHHH
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCC---eEEEEecCccc-------------------------eeeecC------CHHH
Confidence 489999999999999999999 875 68888887531 11 777 5667
Q ss_pred HHHHhcC---ccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCCccccc
Q psy16252 177 KRLVTSK---VNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRKNIEEI 245 (545)
Q Consensus 177 ~~~l~~~---vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i~E~ 245 (545)
+++++++ +|+|||+||.... .+.++..+++|+.++.++++++... .+-.+||++||.++....
T Consensus 49 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~------ 122 (202)
T 3d7l_A 49 IKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPI------ 122 (202)
T ss_dssp HHHHHHHHCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSCC------
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCCC------
Confidence 7777665 8999999996431 2456778899999999999999864 112689999998765321
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceeeccCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVISTWKEPIP 321 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~g~~~~~~~ 321 (545)
.....|+.||...|.+++.++ .+++++++|||.++++..
T Consensus 123 ---------------------------------~~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~---- 165 (202)
T 3d7l_A 123 ---------------------------------VQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD---- 165 (202)
T ss_dssp ---------------------------------TTCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH----
T ss_pred ---------------------------------CccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh----
Confidence 111679999999999998876 389999999999988621
Q ss_pred CCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 322 GWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 322 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
. .. +.....++++++|+|++++.++.... .+++||+
T Consensus 166 ----------~----~~---------~~~~~~~~~~~~dva~~~~~~~~~~~--------~G~~~~v 201 (202)
T 3d7l_A 166 ----------K----LE---------PFFEGFLPVPAAKVARAFEKSVFGAQ--------TGESYQV 201 (202)
T ss_dssp ----------H----HG---------GGSTTCCCBCHHHHHHHHHHHHHSCC--------CSCEEEE
T ss_pred ----------h----hh---------hhccccCCCCHHHHHHHHHHhhhccc--------cCceEec
Confidence 0 00 11224568999999999988874333 3678886
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.2e-19 Score=168.87 Aligned_cols=223 Identities=15% Similarity=0.120 Sum_probs=150.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+||||||+|+||++++++|++.|+ +|+++.|+. +++...... + .....++. |++ +
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~------~~~~~~~~~----~-~~~~~~~~~D~~------~ 65 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREGA---TVAIADIDI------ERARQAAAE----I-GPAAYAVQMDVT------R 65 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----H-CTTEEEEECCTT------C
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHHH----h-CCCceEEEeeCC------C
Confidence 4689999999999999999999999976 688888853 222221111 1 11223333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v 235 (545)
.+++..+++ ++|+||||||... ..+.++..+++|+.|+.++++++... +.-.++|++||..+
T Consensus 66 ~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 145 (259)
T 4e6p_A 66 QDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAG 145 (259)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhh
Confidence 667776665 7999999999753 23567888999999999999987652 11468999999976
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... ....|+.||+..|.+.+.++ .++++.+++||
T Consensus 146 ~~~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG 186 (259)
T 4e6p_A 146 RRGEA---------------------------------------LVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPG 186 (259)
T ss_dssp TSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ccCCC---------------------------------------CChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEEC
Confidence 53211 11679999999999998765 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhc---CceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQA---GVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
.|.++.... ...++..... +.......+......+.+++|+|++++.++..... ...+++|+
T Consensus 187 ~v~t~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~-----~itG~~i~ 251 (259)
T 4e6p_A 187 VVDGEHWDG----------VDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESD-----YIVSQTYN 251 (259)
T ss_dssp CBCSTTHHH----------HHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGT-----TCCSCEEE
T ss_pred CCccchhhh----------hhhhhhhhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccC-----CCCCCEEE
Confidence 998863210 0011111110 00000011122345689999999999988764432 22478999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 252 vdgG 255 (259)
T 4e6p_A 252 VDGG 255 (259)
T ss_dssp ESTT
T ss_pred ECcC
Confidence 9887
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-18 Score=164.78 Aligned_cols=227 Identities=12% Similarity=0.066 Sum_probs=145.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHH-----hhhhcCCCccc-CCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAI-----SLKFTCSTSKE-SAQAP 168 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~-----~~~~~~~~~~~-Dl~~~ 168 (545)
+++|+|+||||+|+||+++++.|++.|+ +|+++.|+.. ++......+-. ........++. |++
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-- 73 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGA---TVAACDLDRA------AAQETVRLLGGPGSKEGPPRGNHAAFQADVS-- 73 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSHH------HHHHHHHTC------------CCEEEECCTT--
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCChH------HHHHHHHHHHhcCccccccCcceEEEEecCC--
Confidence 4579999999999999999999999875 6888888632 12211111000 00001233444 887
Q ss_pred CCCCCHHHHHHHhcC-------c-cEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cC-CceEEE
Q psy16252 169 DLGLSPDDKRLVTSK-------V-NLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KN-LKMFTY 229 (545)
Q Consensus 169 ~lgl~~~~~~~l~~~-------v-d~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~-~~~~v~ 229 (545)
+.+.+..++++ + |+|||+||.... .+.++..+++|+.|+.++++++... .+ ..+||+
T Consensus 74 ----~~~~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~ 149 (264)
T 2pd6_A 74 ----EARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIIN 149 (264)
T ss_dssp ----SHHHHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ----CHHHHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 56667666654 4 999999997532 3567888999999999999988763 12 469999
Q ss_pred EeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCE
Q psy16252 230 VSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPV 304 (545)
Q Consensus 230 vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~ 304 (545)
+||.++.... .....|+.||+..|.+.+.++ .++++
T Consensus 150 isS~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 190 (264)
T 2pd6_A 150 ISSIVGKVGN---------------------------------------VGQTNYAASKAGVIGLTQTAARELGRHGIRC 190 (264)
T ss_dssp ECCTHHHHCC---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred ECChhhccCC---------------------------------------CCChhhHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 9998654221 011679999999998887764 58999
Q ss_pred EEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC
Q psy16252 305 CIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP 384 (545)
Q Consensus 305 ~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~ 384 (545)
+++|||.|+++.....+ ..+......+ .....+++++|+|++++.++..... ...+.
T Consensus 191 ~~v~Pg~v~t~~~~~~~---------~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~ 247 (264)
T 2pd6_A 191 NSVLPGFIATPMTQKVP---------QKVVDKITEM---------IPMGHLGDPEDVADVVAFLASEDSG-----YITGT 247 (264)
T ss_dssp EEEEECSBCSCC-------------------CTGGG---------CTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSC
T ss_pred EEEeeecccccchhhcC---------HHHHHHHHHh---------CCCCCCCCHHHHHHHHHHHcCCccc-----CCCCC
Confidence 99999999887432110 0011000010 1112468899999999988765332 12478
Q ss_pred EEEeecCCCCcccHHH
Q psy16252 385 IYNYVNSKDNPLTWGE 400 (545)
Q Consensus 385 vy~i~~~~~~~~t~~e 400 (545)
.+++.++ ..+++..
T Consensus 248 ~~~v~gg--~~~~~~~ 261 (264)
T 2pd6_A 248 SVEVTGG--LFMAENL 261 (264)
T ss_dssp EEEESTT--C------
T ss_pred EEEECCC--ceecccc
Confidence 9999887 5554443
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-18 Score=163.30 Aligned_cols=216 Identities=14% Similarity=0.114 Sum_probs=136.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++..... .+... ...++. |++
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~----- 73 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA---VIHTCARNEY------ELNECLS----KWQKKGFQVTGSVCDAS----- 73 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCeeEEEECCCC-----
Confidence 4679999999999999999999999875 6888888632 2222111 11111 222333 877
Q ss_pred CCHHHHHHHh--------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEec
Q psy16252 172 LSPDDKRLVT--------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~--------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS 232 (545)
+.++++.++ .++|+|||+||.... .+.++..+++|+.|+.++++++. +. +.+++|++||
T Consensus 74 -~~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~isS 151 (266)
T 1xq1_A 74 -LRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFMSS 151 (266)
T ss_dssp -SHHHHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEEC-
T ss_pred -CHHHHHHHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence 556666665 578999999997532 34567889999999999999884 33 5689999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..++... .....|+.||+..|.+++.++ .+++++++
T Consensus 152 ~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v 192 (266)
T 1xq1_A 152 IAGVVSA---------------------------------------SVGSIYSATKGALNQLARNLACEWASDGIRANAV 192 (266)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred chhccCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEE
Confidence 8765321 011679999999999998765 48999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
|||.|+++...... ...+...... ......+++++|+|++++.++..... ...+++++
T Consensus 193 ~Pg~v~t~~~~~~~--------~~~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~ 250 (266)
T 1xq1_A 193 APAVIATPLAEAVY--------DDEFKKVVIS---------RKPLGRFGEPEEVSSLVAFLCMPAAS-----YITGQTIC 250 (266)
T ss_dssp ECCSCC------------------------------------------CCGGGGHHHHHHHTSGGGT-----TCCSCEEE
T ss_pred eeCCCccchhhhhc--------CHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHcCcccc-----CccCcEEE
Confidence 99999987432110 0001110000 01112478999999999988764322 12478999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 251 v~gG 254 (266)
T 1xq1_A 251 VDGG 254 (266)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8886
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-18 Score=162.28 Aligned_cols=216 Identities=16% Similarity=0.172 Sum_probs=149.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. +++.... .+ ...+++. |++ +
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~--~~~~~~~~D~~------~ 63 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATGA---RVVAVSRTQA------DLDSLVR----EC--PGIEPVCVDLG------D 63 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HS--TTCEEEECCTT------C
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----Hc--CCCCEEEEeCC------C
Confidence 4579999999999999999999999875 6888888632 2222111 11 1223334 877 6
Q ss_pred HHHHHHHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cC-CceEEEEeccccccCC
Q psy16252 174 PDDKRLVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KN-LKMFTYVSTAFSNSYR 239 (545)
Q Consensus 174 ~~~~~~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~-~~~~v~vSS~~v~~~~ 239 (545)
.+++..+++ ++|+|||+||.... .+.++..+++|+.++.++++++... .+ ..++|++||..++...
T Consensus 64 ~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~ 143 (244)
T 3d3w_A 64 WEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV 143 (244)
T ss_dssp HHHHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC
Confidence 677888775 58999999997532 3556788999999999999887652 13 5799999998765421
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeec
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIS 314 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g 314 (545)
. ....|+.||+..|.+++.++ .+++++++|||.|++
T Consensus 144 ~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t 184 (244)
T 3d3w_A 144 T---------------------------------------NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMT 184 (244)
T ss_dssp T---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTT
T ss_pred C---------------------------------------CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccc
Confidence 1 11679999999999998764 589999999999988
Q ss_pred cCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 315 TWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+..... +.. .........+ .....+++++|+|++++.++..... ...+++|++.++
T Consensus 185 ~~~~~~--~~~-----~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v~gG 240 (244)
T 3d3w_A 185 SMGQAT--WSD-----PHKAKTMLNR---------IPLGKFAEVEHVVNAILFLLSDRSG-----MTTGSTLPVEGG 240 (244)
T ss_dssp TTHHHH--SCS-----TTHHHHHHHT---------CTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred cchhhh--ccC-----hHHHHHHHhh---------CCCCCCcCHHHHHHHHHHHcCcccc-----CCCCCEEEECCC
Confidence 632100 000 0111111111 1123688999999999998865432 124789999876
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-19 Score=171.15 Aligned_cols=237 Identities=15% Similarity=0.139 Sum_probs=161.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc-----CCCccc-CCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT-----CSTSKE-SAQAP 168 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~-----~~~~~~-Dl~~~ 168 (545)
+++|+|+||||+|+||+++++.|++.|+ +|+++.|+.. ++..... .++.. ...++. |++
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~~~~Dv~-- 73 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA---SVMIVGRNPD------KLAGAVQ----ELEALGANGGAIRYEPTDIT-- 73 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHTTCCSSCEEEEEECCTT--
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHHhCCCCceEEEEeCCCC--
Confidence 5689999999999999999999999975 6888888632 2222111 12111 222333 888
Q ss_pred CCCCCHHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEE
Q psy16252 169 DLGLSPDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYV 230 (545)
Q Consensus 169 ~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~v 230 (545)
+.+++..+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+-.++|++
T Consensus 74 ----~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~i 149 (281)
T 3svt_A 74 ----NEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGI 149 (281)
T ss_dssp ----SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ----CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 5666666654 6799999999621 13556788999999999999987653 133589999
Q ss_pred eccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 231 STAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 231 SS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
||..+.... .....|+.||+..|.+.+.++ .++++.
T Consensus 150 sS~~~~~~~---------------------------------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn 190 (281)
T 3svt_A 150 SSIAASNTH---------------------------------------RWFGAYGVTKSAVDHLMQLAADELGASWVRVN 190 (281)
T ss_dssp CCHHHHSCC---------------------------------------TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred eCHHHcCCC---------------------------------------CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEE
Confidence 999765332 112689999999999998765 679999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
+++||.|.++.... .............. .....+..++|+|++++.++..... ...+++
T Consensus 191 ~v~PG~v~t~~~~~-------~~~~~~~~~~~~~~---------~p~~r~~~~~dva~~~~~l~s~~~~-----~itG~~ 249 (281)
T 3svt_A 191 SIRPGLIRTDLVAA-------ITESAELSSDYAMC---------TPLPRQGEVEDVANMAMFLLSDAAS-----FVTGQV 249 (281)
T ss_dssp EEEECSBCSGGGHH-------HHTCHHHHHHHHHH---------CSSSSCBCHHHHHHHHHHHHSGGGT-----TCCSCE
T ss_pred EEEeCcCcCcchhh-------cccCHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCcccC-----CCCCCE
Confidence 99999998763211 00001111111111 1123466899999999988765432 224889
Q ss_pred EEeecCCCCccc-HHHHHHHHHHhhccc
Q psy16252 386 YNYVNSKDNPLT-WGEFITKSLKEGVKI 412 (545)
Q Consensus 386 y~i~~~~~~~~t-~~el~~~l~~~~~~~ 412 (545)
+++.++ ..++ ..++.+.+.+.++..
T Consensus 250 ~~vdgG--~~~~~~~~~~~~~~~~~~~~ 275 (281)
T 3svt_A 250 INVDGG--QMLRRGPDFSAMLEPVFGRD 275 (281)
T ss_dssp EEESTT--GGGSCCCCCHHHHHHHHCTT
T ss_pred EEeCCC--hhcccCCcchhccccccCCc
Confidence 999887 5555 667888888777664
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-18 Score=162.60 Aligned_cols=203 Identities=13% Similarity=0.058 Sum_probs=146.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|+||||||+||++++++|+++|+ +|+++.|+.... ...++. |++ +.+
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~~~~--------------------~~~~~~~D~~------~~~ 52 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGY---RVVVLDLRREGE--------------------DLIYVEGDVT------REE 52 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESSCCSS--------------------SSEEEECCTT------CHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEccCcccc--------------------ceEEEeCCCC------CHH
Confidence 58999999999999999999999975 688888876411 112223 777 667
Q ss_pred HHHHHhc------CccEEEEccccccch-----------HHHHHHHHHhHHHHHHHHHHHHHcc-C--------CceEEE
Q psy16252 176 DKRLVTS------KVNLVFHCAATLRFD-----------EELKEAIRTNMCATQTMLDLAKQCK-N--------LKMFTY 229 (545)
Q Consensus 176 ~~~~l~~------~vd~Vih~Aa~~~~~-----------~~~~~~~~~Nv~gt~~ll~~a~~~~-~--------~~~~v~ 229 (545)
++.++++ ++|+|||+||..... +.++..+++|+.++.++++++...- . ..+||+
T Consensus 53 ~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~ 132 (242)
T 1uay_A 53 DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVN 132 (242)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEE
T ss_pred HHHHHHHHHHhhCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Confidence 7777776 789999999975321 2678889999999999999887631 1 238999
Q ss_pred EeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCE
Q psy16252 230 VSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPV 304 (545)
Q Consensus 230 vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~ 304 (545)
+||..++.... ....|+.||+..|.+++.++ .++++
T Consensus 133 ~sS~~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v 173 (242)
T 1uay_A 133 TASVAAFEGQI---------------------------------------GQAAYAASKGGVVALTLPAARELAGWGIRV 173 (242)
T ss_dssp ECCTHHHHCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred eCChhhccCCC---------------------------------------CCchhhHHHHHHHHHHHHHHHHHhhcCcEE
Confidence 99997754321 12689999999999887764 48999
Q ss_pred EEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC
Q psy16252 305 CIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP 384 (545)
Q Consensus 305 ~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~ 384 (545)
+++|||.|+++..... . ..+......+. + . ...+++++|+|++++.++..... .++
T Consensus 174 ~~v~Pg~v~t~~~~~~-------~--~~~~~~~~~~~-~---~----~~~~~~~~dva~~~~~l~~~~~~-------~G~ 229 (242)
T 1uay_A 174 VTVAPGLFDTPLLQGL-------P--EKAKASLAAQV-P---F----PPRLGRPEEYAALVLHILENPML-------NGE 229 (242)
T ss_dssp EEEEECSCSSHHHHTS-------C--HHHHHHHHTTC-C---S----SCSCCCHHHHHHHHHHHHHCTTC-------CSC
T ss_pred EEEEeccCcchhhhcc-------c--hhHHHHHHhhC-C---C----cccCCCHHHHHHHHHHHhcCCCC-------CCc
Confidence 9999999988642211 1 11222222211 1 0 02478999999999998876332 478
Q ss_pred EEEeecC
Q psy16252 385 IYNYVNS 391 (545)
Q Consensus 385 vy~i~~~ 391 (545)
+|++.++
T Consensus 230 ~~~v~gG 236 (242)
T 1uay_A 230 VVRLDGA 236 (242)
T ss_dssp EEEESTT
T ss_pred EEEEcCC
Confidence 9999876
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-18 Score=164.03 Aligned_cols=205 Identities=12% Similarity=0.085 Sum_probs=146.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+||||||+|+||+++++.|++.|+ +|+++.|+...... ....++. |++ +
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~-----------------~~~~~~~~Dv~------d 79 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRNY---RVVATSRSIKPSAD-----------------PDIHTVAGDIS------K 79 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSCCCCSS-----------------TTEEEEESCTT------S
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChhhccc-----------------CceEEEEccCC------C
Confidence 4579999999999999999999999976 78888887543211 0122333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v 235 (545)
++++..+++ ++|+||||||... ..+.++..+++|+.|+.++++++. +. +..++|++||..+
T Consensus 80 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~ 158 (260)
T 3un1_A 80 PETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITTSLV 158 (260)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCTTT
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEechhh
Confidence 667766665 7999999999753 235678889999999999999874 33 5689999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... ......|+.||+..+.+.+.++ .|+++.+++||
T Consensus 159 ~~~~~-------------------------------------~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG 201 (260)
T 3un1_A 159 DQPMV-------------------------------------GMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPG 201 (260)
T ss_dssp TSCBT-------------------------------------TCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEEC
T ss_pred ccCCC-------------------------------------CCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeec
Confidence 53211 0111679999999999998775 48999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++...+ ........ ......+..++|||++++.+...... .++++++.+
T Consensus 202 ~v~t~~~~~------------~~~~~~~~---------~~p~~r~~~~~dva~av~~L~~~~~i-------tG~~i~vdG 253 (260)
T 3un1_A 202 VIKTPMHPA------------ETHSTLAG---------LHPVGRMGEIRDVVDAVLYLEHAGFI-------TGEILHVDG 253 (260)
T ss_dssp CBCCTTSCG------------GGHHHHHT---------TSTTSSCBCHHHHHHHHHHHHHCTTC-------CSCEEEEST
T ss_pred CCCCCCCCH------------HHHHHHhc---------cCCCCCCcCHHHHHHHHHHhcccCCC-------CCcEEEECC
Confidence 998863211 01111111 11233567899999999988433322 588999988
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 254 G 254 (260)
T 3un1_A 254 G 254 (260)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-18 Score=160.83 Aligned_cols=218 Identities=14% Similarity=0.083 Sum_probs=146.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||||+||++++++|++.|+ +|+++.|+.. +++.....+-.. ......++. |++ +
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~~~~~~-~~~~~~~~~~D~~------~ 68 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGS---TVIITGTSGE------RAKAVAEEIANK-YGVKAHGVEMNLL------S 68 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSHH------HHHHHHHHHHHH-HCCCEEEEECCTT------C
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCChH------HHHHHHHHHHhh-cCCceEEEEccCC------C
Confidence 4579999999999999999999999875 6888888632 222211111000 011223344 887 6
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v 235 (545)
.++++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+. +. +.++||++||..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~ 147 (248)
T 2pnf_A 69 EESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNISSVVG 147 (248)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEECCHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEccHHh
Confidence 677777765 79999999997532 34567889999999977776553 33 5689999999865
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..|.+.+.++ .+++++++|||
T Consensus 148 ~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg 188 (248)
T 2pnf_A 148 FTGN---------------------------------------VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPG 188 (248)
T ss_dssp HHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred cCCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEec
Confidence 4221 011579999999999887764 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++.... +. .........+. ....+++++|+|++++.++..... ...+++|++.+
T Consensus 189 ~v~t~~~~~-------~~--~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v~g 245 (248)
T 2pnf_A 189 FIETDMTAV-------LS--EEIKQKYKEQI---------PLGRFGSPEEVANVVLFLCSELAS-----YITGEVIHVNG 245 (248)
T ss_dssp SBCCGGGGG-------SC--HHHHHHHHHTC---------TTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred eecCchhhh-------cc--HHHHHHHHhcC---------CCCCccCHHHHHHHHHHHhCchhh-----cCCCcEEEeCC
Confidence 998863221 10 11111111111 123478999999999988865322 12478999887
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 246 g 246 (248)
T 2pnf_A 246 G 246 (248)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=160.64 Aligned_cols=220 Identities=12% Similarity=0.111 Sum_probs=149.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|+++|+ +|+++.|+.. ++..... .++. ....++. |++
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~D~~----- 72 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGA---RVIIADLDEA------MATKAVE----DLRMEGHDVSSVVMDVT----- 72 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCceEEEEecCC-----
Confidence 4579999999999999999999999875 6888888632 2221111 1111 1233444 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++++... .+..++|++||.
T Consensus 73 -~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 151 (260)
T 3awd_A 73 -NTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSM 151 (260)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecc
Confidence 5666766664 7899999999653 12456778999999999999887642 256799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
++...... .....|+.||+..|.+++.++ .+++++++|
T Consensus 152 ~~~~~~~~-------------------------------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~ 194 (260)
T 3awd_A 152 SGLIVNRP-------------------------------------QQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVA 194 (260)
T ss_dssp GGTSCCSS-------------------------------------SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhcccCCC-------------------------------------CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEE
Confidence 76532110 001579999999999998764 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|+++.... .... ..+......+. ....+++++|+|++++.++..... ...+++|++
T Consensus 195 pg~v~t~~~~~------~~~~-~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v 253 (260)
T 3awd_A 195 PTYIETTLTRF------GMEK-PELYDAWIAGT---------PMGRVGQPDEVASVVQFLASDAAS-----LMTGAIVNV 253 (260)
T ss_dssp ECCBCCTTTHH------HHTC-HHHHHHHHHTC---------TTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eeeeccchhhc------ccCC-hHHHHHHHhcC---------CcCCCCCHHHHHHHHHHHhCchhc-----cCCCcEEEE
Confidence 99998863220 0000 11222222211 123478999999999988765332 124789999
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 254 ~gg 256 (260)
T 3awd_A 254 DAG 256 (260)
T ss_dssp STT
T ss_pred CCc
Confidence 876
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=156.30 Aligned_cols=215 Identities=14% Similarity=0.122 Sum_probs=148.7
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLGL 172 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lgl 172 (545)
.+|+++||||+|+||++++++|++.|+ +|+++.|... ++++.... .++... ..++. |++
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~Dv~------ 64 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGY---NVAVNYAGSK-----EKAEAVVE----EIKAKGVDSFAIQANVA------ 64 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH-----HHHHHHHH----HHHHTTSCEEEEECCTT------
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCCH-----HHHHHHHH----HHHhcCCcEEEEEccCC------
Confidence 479999999999999999999999976 6777666432 22222111 111112 22333 888
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEeccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAF 234 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~ 234 (545)
+.++++.+++ ++|++||+||... ..+.++..+++|+.|+.++++++ ++. +..++|++||..
T Consensus 65 d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~ 143 (246)
T 3osu_A 65 DADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAIINLSSVV 143 (246)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchh
Confidence 6667766665 7899999999753 23567888999999999999988 333 557999999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..+.+.+.++ .++++.+++|
T Consensus 144 ~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~P 184 (246)
T 3osu_A 144 GAVGN---------------------------------------PGQANYVATKAGVIGLTKSAARELASRGITVNAVAP 184 (246)
T ss_dssp HHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hcCCC---------------------------------------CCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEE
Confidence 64321 112679999999888887664 6899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++..... . .........+ .....+..++|+|++++.++..... ...++++++.
T Consensus 185 G~v~t~~~~~~-------~--~~~~~~~~~~---------~p~~r~~~~~dva~~v~~l~s~~~~-----~itG~~i~vd 241 (246)
T 3osu_A 185 GFIVSDMTDAL-------S--DELKEQMLTQ---------IPLARFGQDTDIANTVAFLASDKAK-----YITGQTIHVN 241 (246)
T ss_dssp CSBGGGCCSCS-------C--HHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHTSGGGT-----TCCSCEEEES
T ss_pred CCCcCCccccc-------C--HHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccc-----CCCCCEEEeC
Confidence 99988743221 1 1222222221 1223467889999999988765432 2347899998
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 242 gG 243 (246)
T 3osu_A 242 GG 243 (246)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-18 Score=164.91 Aligned_cols=224 Identities=14% Similarity=0.074 Sum_probs=149.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|... +++.... ..++. ....++. |++
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G~---~v~~~~r~~~-----~~~~~~~----~~l~~~~~~~~~~~~D~~----- 81 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRGA---SVVVNYGSSS-----KAAEEVV----AELKKLGAQGVAIQADIS----- 81 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCH-----HHHHHHH----HHHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCch-----HHHHHHH----HHHHhcCCcEEEEEecCC-----
Confidence 5689999999999999999999999875 6888888421 1222211 11111 1223344 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEecccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFS 235 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v 235 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ .+||++||..+
T Consensus 82 -~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~ 159 (274)
T 1ja9_A 82 -KPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAA 159 (274)
T ss_dssp -SHHHHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHh
Confidence 5667777665 79999999997532 2456788999999999999998764 12 69999999977
Q ss_pred c-cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 236 N-SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 236 ~-~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+ ... .....|+.||+..|.+++.++ .+++++++||
T Consensus 160 ~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~P 200 (274)
T 1ja9_A 160 VMTGI---------------------------------------PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAP 200 (274)
T ss_dssp TCCSC---------------------------------------CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred ccCCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEee
Confidence 6 321 011579999999999998765 5899999999
Q ss_pred ceeeccCCCC-----CCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC
Q psy16252 310 SIVISTWKEP-----IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP 384 (545)
Q Consensus 310 ~~i~g~~~~~-----~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~ 384 (545)
|.|.++.... .+....... .......... ......+++++|+|++++.++..... ...++
T Consensus 201 g~v~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~dva~~i~~l~~~~~~-----~~~G~ 265 (274)
T 1ja9_A 201 GGVKTDMFDENSWHYAPGGYKGMP-QEKIDEGLAN---------MNPLKRIGYPADIGRAVSALCQEESE-----WINGQ 265 (274)
T ss_dssp CCBSSHHHHHHGGGTSTTCCTTCC-HHHHHHHHHH---------TSTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSC
T ss_pred CcccccchhcccccccccccccCc-hHHHHHHHHh---------cCCCCCccCHHHHHHHHHHHhCcccc-----cccCc
Confidence 9998753210 000000000 0111111111 12234688999999999998865432 12478
Q ss_pred EEEeecC
Q psy16252 385 IYNYVNS 391 (545)
Q Consensus 385 vy~i~~~ 391 (545)
+|++.++
T Consensus 266 ~~~v~gG 272 (274)
T 1ja9_A 266 VIKLTGG 272 (274)
T ss_dssp EEEESTT
T ss_pred EEEecCC
Confidence 9999875
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.1e-18 Score=162.64 Aligned_cols=229 Identities=12% Similarity=0.030 Sum_probs=149.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++......+-.. ......++. |++ +
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~~l~~~-~~~~~~~~~~D~~------~ 68 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGA---HIVLVARQVD------RLHEAARSLKEK-FGVRVLEVAVDVA------T 68 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHHHH-HCCCEEEEECCTT------S
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCHH------HHHHHHHHHHHh-cCCceEEEEcCCC------C
Confidence 4579999999999999999999999875 6888888632 222211111000 011233344 887 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+++..+++ ++|+|||+||... ..+.++..+++|+.|+.++++++... .+..++|++||..++
T Consensus 69 ~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 148 (263)
T 3ai3_A 69 PEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAV 148 (263)
T ss_dssp HHHHHHHHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhc
Confidence 667766665 7999999999753 23567888999999999999887531 256899999999876
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..|.+.+.++ .+++++++|||.
T Consensus 149 ~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~ 189 (263)
T 3ai3_A 149 QPLW---------------------------------------YEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGL 189 (263)
T ss_dssp SCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC
T ss_pred CCCC---------------------------------------CcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCc
Confidence 4321 11579999999999988765 589999999999
Q ss_pred eeccCCCCC-CCCccCcc-chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 312 VISTWKEPI-PGWIDNLY-GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 312 i~g~~~~~~-~g~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|+++..... +.+..... ...........+. .....+++++|+|++++.++..... ...+++|++.
T Consensus 190 v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~p~~~~~~~~dvA~~~~~l~s~~~~-----~~~G~~~~vd 256 (263)
T 3ai3_A 190 ILTPDWIKTAKELTKDNGGDWKGYLQSVADEH--------APIKRFASPEELANFFVFLCSERAT-----YSVGSAYFVD 256 (263)
T ss_dssp BCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH--------CTTCSCBCHHHHHHHHHHHTSTTCT-----TCCSCEEEES
T ss_pred ccCcchhhhhHhhhcccCCcHHHHHHHHHhcC--------CCCCCCcCHHHHHHHHHHHcCcccc-----CCCCcEEEEC
Confidence 988631100 00000000 0011111111100 1123578999999999988765432 1247899998
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 257 gG 258 (263)
T 3ai3_A 257 GG 258 (263)
T ss_dssp TT
T ss_pred CC
Confidence 87
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=160.88 Aligned_cols=217 Identities=12% Similarity=0.075 Sum_probs=146.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+... +.+. ..+. . .++. |++ +
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~----~~~~-------~~~~--~-~~~~~D~~------~ 60 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGA---LVALCDLRPEG----KEVA-------EAIG--G-AFFQVDLE------D 60 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTTH----HHHH-------HHHT--C-EEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChhH----HHHH-------HHhh--C-CEEEeeCC------C
Confidence 4579999999999999999999999875 68888887532 1111 1111 1 3333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++++.+++ ++|+||||||.... .+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 61 ~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~ 140 (256)
T 2d1y_A 61 ERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL 140 (256)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcccccc
Confidence 566666554 68999999997532 3457788999999999999987642 256899999998764
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..|.+.+.++ .++++++++||.
T Consensus 141 ~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~ 181 (256)
T 2d1y_A 141 FAEQ---------------------------------------ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGA 181 (256)
T ss_dssp SBCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred CCCC---------------------------------------CChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCC
Confidence 3210 11579999999999988765 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHh-cCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQ-AGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
|.++... ..+.... ................+++++|+|++++.++..... ...++++++.+
T Consensus 182 v~t~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~s~~~~-----~~~G~~~~v~g 243 (256)
T 2d1y_A 182 IATEAVL-------------EAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKAS-----FITGAILPVDG 243 (256)
T ss_dssp BCCHHHH-------------HHHC--------CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred ccCchhh-------------hccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhc-----CCCCCEEEECC
Confidence 8664210 0000000 000000001112234588999999999988765432 12478999988
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 244 G 244 (256)
T 2d1y_A 244 G 244 (256)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=160.82 Aligned_cols=219 Identities=10% Similarity=0.031 Sum_probs=148.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC-CCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA-KKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~-~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+ ... .+.+...+.. ......++. |++
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~---~~~~~~~~~~-----~~~~~~~~~~D~~------ 67 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGA---KVGLHGRKAPAN---IDETIASMRA-----DGGDAAFFAADLA------ 67 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCCTT---HHHHHHHHHH-----TTCEEEEEECCTT------
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEECCCchhh---HHHHHHHHHh-----cCCceEEEECCCC------
Confidence 4679999999999999999999999875 68889997 321 1111111100 011223344 887
Q ss_pred CHHHHHHHhc-------CccEEEEcccc-cc-------chHHHHHHHHHhHHHHHHHHHHHHHc--------cCCceEEE
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAAT-LR-------FDEELKEAIRTNMCATQTMLDLAKQC--------KNLKMFTY 229 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~-~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~~~~~v~ 229 (545)
+.+++..+++ ++|+|||+||. .. ..+.++..+++|+.|+.++++++... +...++|+
T Consensus 68 ~~~~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 147 (258)
T 3afn_B 68 TSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVIS 147 (258)
T ss_dssp SHHHHHHHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEE
Confidence 5677777766 79999999996 21 12456778899999999998876531 11268999
Q ss_pred Eecccccc-CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCC
Q psy16252 230 VSTAFSNS-YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFP 303 (545)
Q Consensus 230 vSS~~v~~-~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~ 303 (545)
+||.++.. .. .....|+.||+..|.+++.++ .+++
T Consensus 148 ~sS~~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~ 188 (258)
T 3afn_B 148 TGSIAGHTGGG---------------------------------------PGAGLYGAAKAFLHNVHKNWVDFHTKDGVR 188 (258)
T ss_dssp ECCTHHHHCCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred ecchhhccCCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHhhcccCeE
Confidence 99987653 11 011679999999999988764 4899
Q ss_pred EEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCC
Q psy16252 304 VCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCL 383 (545)
Q Consensus 304 ~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~ 383 (545)
++++|||.|+++..... ...+...+..+ .....+++++|+|++++.++..... ....+
T Consensus 189 v~~v~Pg~v~t~~~~~~---------~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~----~~~~G 246 (258)
T 3afn_B 189 FNIVSPGTVDTAFHADK---------TQDVRDRISNG---------IPMGRFGTAEEMAPAFLFFASHLAS----GYITG 246 (258)
T ss_dssp EEEEEECSBSSGGGTTC---------CHHHHHHHHTT---------CTTCSCBCGGGTHHHHHHHHCHHHH----TTCCS
T ss_pred EEEEeCCCccccccccc---------CHHHHHHHhcc---------CCCCcCCCHHHHHHHHHHHhCcchh----ccccC
Confidence 99999999988743211 01222222221 1123689999999999988765321 00137
Q ss_pred CEEEeecC
Q psy16252 384 PIYNYVNS 391 (545)
Q Consensus 384 ~vy~i~~~ 391 (545)
++|++.++
T Consensus 247 ~~~~v~gg 254 (258)
T 3afn_B 247 QVLDINGG 254 (258)
T ss_dssp EEEEESTT
T ss_pred CEEeECCC
Confidence 79999876
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=158.37 Aligned_cols=218 Identities=13% Similarity=0.073 Sum_probs=146.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCC-Cccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS-TSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~-~~~~-Dl~~~~lgl 172 (545)
+++|+|+||||||+||++++++|++.|+ +|+++.|+.. ++..... .+. ... .++. |++
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~-~~~~~~~~~D~~------ 68 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGA---RLILIDREAA------ALDRAAQ----ELG-AAVAARIVADVT------ 68 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHG-GGEEEEEECCTT------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----Hhc-ccceeEEEEecC------
Confidence 4679999999999999999999999875 6888888632 2222111 111 112 3333 887
Q ss_pred CHHHHHHHh------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecccc
Q psy16252 173 SPDDKRLVT------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFS 235 (545)
Q Consensus 173 ~~~~~~~l~------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v 235 (545)
+.++++.++ .++|+|||+||.... .+.++..+++|+.|+.++++.+. +. +.++||++||..+
T Consensus 69 ~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~isS~~~ 147 (254)
T 2wsb_A 69 DAEAMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVAR-GAGAIVNLGSMSG 147 (254)
T ss_dssp CHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGG
T ss_pred CHHHHHHHHHHHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEecchh
Confidence 566666665 478999999997532 34567888999999888777654 33 5689999999976
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
+..... .....|+.||+..|.+++.++ .+++++++|||
T Consensus 148 ~~~~~~-------------------------------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg 190 (254)
T 2wsb_A 148 TIVNRP-------------------------------------QFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPG 190 (254)
T ss_dssp TSCCSS-------------------------------------SCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ccCCCC-------------------------------------CcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEec
Confidence 532110 001579999999999988765 48999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|+++...... ............ .....+++++|+|++++.++..... ...+.++++.+
T Consensus 191 ~v~t~~~~~~~-------~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v~g 249 (254)
T 2wsb_A 191 YVATEMTLKMR-------ERPELFETWLDM---------TPMGRCGEPSEIAAAALFLASPAAS-----YVTGAILAVDG 249 (254)
T ss_dssp CBCSHHHHHHH-------TCHHHHHHHHHT---------STTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred ccCchhhhccc-------cChHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCcccc-----cccCCEEEECC
Confidence 99886321100 001111111111 1123578999999999988765322 12478898877
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 250 G 250 (254)
T 2wsb_A 250 G 250 (254)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-17 Score=159.39 Aligned_cols=231 Identities=13% Similarity=0.072 Sum_probs=147.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|++|||||+|+||++++++|++.|. +|+++.|... +.++.....+ .........++. |++ +
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G~---~V~~~~r~~~-----~~~~~~~~~~-~~~~~~~~~~~~~Dv~------d 87 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAGA---NIVLNGFGAP-----DEIRTVTDEV-AGLSSGTVLHHPADMT------K 87 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEECCCCH-----HHHHHHHHHH-HTTCSSCEEEECCCTT------C
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCCh-----HHHHHHHHHH-hhccCCcEEEEeCCCC------C
Confidence 4579999999999999999999999975 6888877431 2222211110 000011223334 887 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+++..+++ ++|++||+||... ..+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 88 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 167 (281)
T 3v2h_A 88 PSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGL 167 (281)
T ss_dssp HHHHHHHHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccc
Confidence 666766665 7899999999753 23567788999999999999987421 245789999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+.++ .++++.+++||.
T Consensus 168 ~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~ 208 (281)
T 3v2h_A 168 VAS---------------------------------------PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGY 208 (281)
T ss_dssp SCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred cCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCC
Confidence 321 112679999999999987765 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHh-cCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQ-AGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
|.++....... ... ...... ................++.++|+|++++.++..... ...++++++.+
T Consensus 209 v~t~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~-----~itG~~i~vdG 276 (281)
T 3v2h_A 209 VLTPLVEKQIP---DQA----RTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAA-----QITGTHVSMDG 276 (281)
T ss_dssp BCC-----------------------------------CCTTCSCBCHHHHHHHHHHHHSSGGG-----GCCSCEEEEST
T ss_pred CcCcchhhhcc---hhh----hhcCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcC-----CCCCcEEEECC
Confidence 98864321100 000 000000 000001122333445789999999999988765432 12478999887
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 277 G 277 (281)
T 3v2h_A 277 G 277 (281)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-17 Score=158.79 Aligned_cols=209 Identities=12% Similarity=0.086 Sum_probs=145.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|... ++..... .+.. ...++. |++ +
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~-~~~~~~~D~~------~ 64 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGA---KVVFGDILDE------EGKAMAA----ELAD-AARYVHLDVT------Q 64 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HTGG-GEEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----Hhhc-CceEEEecCC------C
Confidence 4679999999999999999999999875 6888888632 2221111 1111 122333 887 6
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v 235 (545)
.+++.++++ ++|+|||+||.... .+.++..+++|+.|+.++++.+. +. +..++|++||..+
T Consensus 65 ~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~ 143 (260)
T 1nff_A 65 PAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEG 143 (260)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEeehhh
Confidence 677777766 79999999997532 35678889999999977766553 33 5689999999977
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
+.... ....|+.||+..|.+.+.++ .+++++++|||
T Consensus 144 ~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg 184 (260)
T 1nff_A 144 LAGTV---------------------------------------ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPG 184 (260)
T ss_dssp TSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred cCCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeC
Confidence 53211 11579999999999987764 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|+++... +.. . ... ......+++++|+|++++.++..... ...+++|++.+
T Consensus 185 ~v~t~~~~----~~~-----~---------~~~-----~~~~~~~~~~~dvA~~v~~l~s~~~~-----~~~G~~~~v~g 236 (260)
T 1nff_A 185 LVKTPMTD----WVP-----E---------DIF-----QTALGRAAEPVEVSNLVVYLASDESS-----YSTGAEFVVDG 236 (260)
T ss_dssp CBCSGGGT----TSC-----T---------TCS-----CCSSSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred CCCCCccc----cch-----h---------hHH-----hCccCCCCCHHHHHHHHHHHhCcccc-----CCcCCEEEECC
Confidence 99886421 000 0 000 01112468899999999988765432 12478999988
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 237 G 237 (260)
T 1nff_A 237 G 237 (260)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=159.44 Aligned_cols=213 Identities=15% Similarity=0.121 Sum_probs=124.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+||||||+|+||++++++|++.|+ +|+++.|+.. ++..... .+... ...++. |++
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~----- 68 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA---AVVVADINAE------AAEAVAK----QIVADGGTAISVAVDVS----- 68 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHHTTCEEEEEECCTT-----
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCHH------HHHHHHH----HHHhcCCcEEEEEccCC-----
Confidence 4689999999999999999999999975 6888888632 2222111 11111 222333 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc----------chHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEE
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR----------FDEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYV 230 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~----------~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~v 230 (545)
+.++++.+++ ++|+||||||... ..+.++..+++|+.|+.++++.+. +. +..++|++
T Consensus 69 -~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~i 146 (253)
T 3qiv_A 69 -DPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR-GGGAIVNQ 146 (253)
T ss_dssp -SHHHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 5666766665 7899999999731 235567889999999777666553 33 45789999
Q ss_pred eccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 231 STAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 231 SS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
||..++.. ...|+.||+..|.+.+.++ .++++.
T Consensus 147 sS~~~~~~------------------------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~ 184 (253)
T 3qiv_A 147 SSTAAWLY------------------------------------------SNYYGLAKVGINGLTQQLSRELGGRNIRIN 184 (253)
T ss_dssp CC-----------------------------------------------------CCHHHHHHHHHHHHHHTTTTTEEEE
T ss_pred CCccccCC------------------------------------------CchhHHHHHHHHHHHHHHHHHHhhcCeEEE
Confidence 99976521 1569999999999887765 589999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
+++||.|.++...... +..+......+ .....+..++|+|++++.++..... ...+++
T Consensus 185 ~v~PG~v~t~~~~~~~--------~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~-----~~tG~~ 242 (253)
T 3qiv_A 185 AIAPGPIDTEANRTTT--------PKEMVDDIVKG---------LPLSRMGTPDDLVGMCLFLLSDEAS-----WITGQI 242 (253)
T ss_dssp EEEC------------------------------------------------CCHHHHHHHHHHSGGGT-----TCCSCE
T ss_pred EEEecCCcccchhhcC--------cHHHHHHHhcc---------CCCCCCCCHHHHHHHHHHHcCcccc-----CCCCCE
Confidence 9999999886432110 01111111111 1123456789999999988765432 124789
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
|++.++
T Consensus 243 ~~vdgG 248 (253)
T 3qiv_A 243 FNVDGG 248 (253)
T ss_dssp EEC---
T ss_pred EEECCC
Confidence 999887
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-17 Score=157.31 Aligned_cols=217 Identities=12% Similarity=0.086 Sum_probs=149.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|+ +|+++.|+.. +++.... .++.. ...++. |++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~Dv~----- 71 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA---SVVVTDLKSE------GAEAVAA----AIRQAGGKAIGLECNVT----- 71 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC---EEEEEESSHH------HHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCcEEEEECCCC-----
Confidence 5689999999999999999999999976 6888888632 2222111 11111 223334 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+.++++.+++ ++|++|||||.... .+.++..+++|+.|+.++++++... .+..++|++||..+
T Consensus 72 -d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~ 150 (256)
T 3gaf_A 72 -DEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAG 150 (256)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHH
Confidence 5666666654 78999999997532 3567888999999999999987531 24579999999976
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..+.+.+.++ .++++..++||
T Consensus 151 ~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG 191 (256)
T 3gaf_A 151 ENTN---------------------------------------VRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPG 191 (256)
T ss_dssp TCCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred cCCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEc
Confidence 5321 112679999999999998765 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++.... ... ......... ......+..++|+|++++.++..... ...++++++.+
T Consensus 192 ~v~T~~~~~-------~~~-~~~~~~~~~---------~~p~~r~~~~~dva~~~~~L~s~~~~-----~itG~~i~vdg 249 (256)
T 3gaf_A 192 AIKTDALAT-------VLT-PEIERAMLK---------HTPLGRLGEAQDIANAALFLCSPAAA-----WISGQVLTVSG 249 (256)
T ss_dssp CBCCHHHHH-------HCC-HHHHHHHHT---------TCTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred cccCchhhh-------ccC-HHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCCccc-----CccCCEEEECC
Confidence 987752110 000 111111111 11223578899999999988765432 23588999988
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 250 G 250 (256)
T 3gaf_A 250 G 250 (256)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=162.05 Aligned_cols=213 Identities=15% Similarity=0.137 Sum_probs=145.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|. +|++..|........ ..+. |++ +
T Consensus 26 l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~~~~~~~-------------------~~~~~Dv~------~ 77 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGGAVVTALRAAGA---RVAVADRAVAGIAAD-------------------LHLPGDLR------E 77 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEECSSCCTTSCCS-------------------EECCCCTT------S
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHhh-------------------hccCcCCC------C
Confidence 5689999999999999999999999975 688888875432110 0011 666 4
Q ss_pred HHHHHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v 235 (545)
.+....++ .++|++|||||... ..+.++..+++|+.|+.++++++. +. +..++|++||..+
T Consensus 78 ~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~ 156 (266)
T 3uxy_A 78 AAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNVASCWG 156 (266)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBT
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHHh
Confidence 45554444 37899999999754 235678889999999999999883 33 5679999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... ....|+.||+..|.+.+.++ .++++.+++||
T Consensus 157 ~~~~~---------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG 197 (266)
T 3uxy_A 157 LRPGP---------------------------------------GHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPN 197 (266)
T ss_dssp TBCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEES
T ss_pred CCCCC---------------------------------------CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeC
Confidence 53211 11679999999999988765 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++..... +............... .......+..++|+|++++.++..... ...++++++.+
T Consensus 198 ~v~T~~~~~~--~~~~~~~~~~~~~~~~---------~~~p~~r~~~pedvA~~v~~L~s~~~~-----~itG~~i~vdG 261 (266)
T 3uxy_A 198 EVNTPMLRTG--FAKRGFDPDRAVAELG---------RTVPLGRIAEPEDIADVVLFLASDAAR-----YLCGSLVEVNG 261 (266)
T ss_dssp SBCCHHHHHH--HHHTTCCHHHHHHHHH---------TTSTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred CCcchHhhhh--hhcccccchHHHHHHH---------hcCCCCCCcCHHHHHHHHHHHhCchhc-----CCcCCEEEECc
Confidence 9977521100 0000000011111111 112234578899999999988875432 23478999987
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 262 G 262 (266)
T 3uxy_A 262 G 262 (266)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-18 Score=163.31 Aligned_cols=218 Identities=11% Similarity=0.114 Sum_probs=145.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+. .|+++.|+... +.+.++.. ........++. |++++
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~--~v~~~~r~~~~----~~~~~l~~----~~~~~~~~~~~~D~~~~----- 67 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLK--NFVILDRVENP----TALAELKA----INPKVNITFHTYDVTVP----- 67 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCS--EEEEEESSCCH----HHHHHHHH----HCTTSEEEEEECCTTSC-----
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCc--EEEEEecCchH----HHHHHHHH----hCCCceEEEEEEecCCC-----
Confidence 45799999999999999999999999752 47788887531 22222111 11111223344 88742
Q ss_pred HHHHHHHhc-------CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHcc---C---CceEEEEeccccccCCC
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCK---N---LKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~---~---~~~~v~vSS~~v~~~~~ 240 (545)
.+++..+++ ++|+|||+||... .+.++..+++|+.|+.++++++...- + ..++|++||..++....
T Consensus 68 ~~~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 146 (254)
T 1sby_A 68 VAESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIH 146 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT
T ss_pred hHHHHHHHHHHHHhcCCCCEEEECCccCC-HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCC
Confidence 144444443 7899999999764 35578889999999999999887521 1 35799999997754211
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
....|+.||+..|.+.+.++ .++++++++||.|.++
T Consensus 147 ---------------------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~ 187 (254)
T 1sby_A 147 ---------------------------------------QVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTP 187 (254)
T ss_dssp ---------------------------------------TSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESH
T ss_pred ---------------------------------------CchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCc
Confidence 11579999999999988764 5899999999999886
Q ss_pred CCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.......|.... ........ ...+.+++|+|++++.++.... .+.+|++.++
T Consensus 188 ~~~~~~~~~~~~----~~~~~~~~------------~~~~~~~~dvA~~i~~~~~~~~--------~G~~~~v~gG 239 (254)
T 1sby_A 188 LVHTFNSWLDVE----PRVAELLL------------SHPTQTSEQCGQNFVKAIEANK--------NGAIWKLDLG 239 (254)
T ss_dssp HHHSCCCGGGSC----TTHHHHHT------------TSCCEEHHHHHHHHHHHHHHCC--------TTCEEEEETT
T ss_pred cccccchhhhhh----HHHHHHHh------------cCCCCCHHHHHHHHHHHHHcCC--------CCCEEEEeCC
Confidence 322211111100 00011111 1133489999999998876433 3789999886
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=158.26 Aligned_cols=213 Identities=13% Similarity=0.073 Sum_probs=144.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|+...... .... + .....++. |++ +
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~---~~~~-------~-~~~~~~~~~Dv~------~ 64 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEGA---TVLGLDLKPPAGEE---PAAE-------L-GAAVRFRNADVT------N 64 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSCC-----------------------CEEEECCTT------C
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChHHHHH---HHHH-------h-CCceEEEEccCC------C
Confidence 4589999999999999999999999975 68888887643211 1110 0 01223333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc---------cCCce
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC---------KNLKM 226 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~---------~~~~~ 226 (545)
.+++..+++ ++|++|||||.... .+.++..+++|+.|+.++++++... ++..+
T Consensus 65 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~ 144 (257)
T 3tpc_A 65 EADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGV 144 (257)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeE
Confidence 666766665 79999999997521 3567888999999999999988763 13467
Q ss_pred EEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cC
Q psy16252 227 FTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QF 301 (545)
Q Consensus 227 ~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~ 301 (545)
+|++||..+.... .....|+.||+..+.+.+.++ .+
T Consensus 145 iv~isS~~~~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~g 185 (257)
T 3tpc_A 145 IVNTASIAAFDGQ---------------------------------------IGQAAYAASKGGVAALTLPAARELARFG 185 (257)
T ss_dssp EEEECCTHHHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEechhhccCC---------------------------------------CCCcchHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999998765321 112679999999998887654 68
Q ss_pred CCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCc-ccceehHHHHHHHHhcccccccccCCCC
Q psy16252 302 FPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVK-ADIVPADLVVNALICAPWNGHERFHKDP 380 (545)
Q Consensus 302 l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~vddva~ai~~~~~~~~~~~~~~~ 380 (545)
+++.+++||.|.++.....+ ........ ..... ..+..++|+|++++.++.....
T Consensus 186 i~vn~v~PG~v~t~~~~~~~---------~~~~~~~~---------~~~p~~~r~~~~~dva~~v~~l~s~~~i------ 241 (257)
T 3tpc_A 186 IRVVTIAPGIFDTPMMAGMP---------QDVQDALA---------ASVPFPPRLGRAEEYAALVKHICENTML------ 241 (257)
T ss_dssp EEEEEEEECCBSCC--------------------------------CCSSSSCSCBCHHHHHHHHHHHHHCTTC------
T ss_pred eEEEEEEeCCCCChhhccCC---------HHHHHHHH---------hcCCCCCCCCCHHHHHHHHHHHcccCCc------
Confidence 99999999999876322110 00111110 11111 3578899999999988865333
Q ss_pred CCCCEEEeecC
Q psy16252 381 SCLPIYNYVNS 391 (545)
Q Consensus 381 ~~~~vy~i~~~ 391 (545)
.++++++.++
T Consensus 242 -tG~~i~vdGG 251 (257)
T 3tpc_A 242 -NGEVIRLDGA 251 (257)
T ss_dssp -CSCEEEESTT
T ss_pred -CCcEEEECCC
Confidence 5889998876
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=160.99 Aligned_cols=222 Identities=14% Similarity=0.084 Sum_probs=148.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++..... .+... ...++. |++
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~D~~----- 73 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGA---HVVVSSRKQE------NVDRTVA----TLQGEGLSVTGTVCHVG----- 73 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCceEEEEccCC-----
Confidence 5689999999999999999999999875 6888888632 2222111 11111 122333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++++.. ..+..++|++||.
T Consensus 74 -~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~ 152 (260)
T 2zat_A 74 -KAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSV 152 (260)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEech
Confidence 5566666554 7999999999642 1345678899999999999888753 1256899999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.++.... ....|+.||+..|.+.+.++ .++++++++
T Consensus 153 ~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 193 (260)
T 2zat_A 153 GAYHPFP---------------------------------------NLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLA 193 (260)
T ss_dssp GGTSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhcCCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEE
Confidence 8764311 11579999999999998765 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++.... .............+ .....+++++|+|++++.++..... ...++++++
T Consensus 194 Pg~v~t~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~~~dva~~v~~l~s~~~~-----~~tG~~~~v 252 (260)
T 2zat_A 194 PGLIKTNFSQV-------LWMDKARKEYMKES---------LRIRRLGNPEDCAGIVSFLCSEDAS-----YITGETVVV 252 (260)
T ss_dssp ECSBCSSTTHH-------HHSSHHHHHHHHHH---------HTCSSCBCGGGGHHHHHHHTSGGGT-----TCCSCEEEE
T ss_pred ECcccCccchh-------cccChHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccC-----CccCCEEEE
Confidence 99997652110 00000000111100 0122478999999999988765432 124789999
Q ss_pred ecCCCCccc
Q psy16252 389 VNSKDNPLT 397 (545)
Q Consensus 389 ~~~~~~~~t 397 (545)
.++ ..++
T Consensus 253 dgG--~~~s 259 (260)
T 2zat_A 253 GGG--TASR 259 (260)
T ss_dssp STT--CCCC
T ss_pred CCC--cccc
Confidence 887 4443
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=159.41 Aligned_cols=218 Identities=12% Similarity=0.087 Sum_probs=137.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++ .|+.. ..+.+...+.. ......++. |++
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~---~V~~~~~r~~~---~~~~~~~~~~~-----~~~~~~~~~~D~~------ 65 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGA---NIVLNGSPAST---SLDATAEEFKA-----AGINVVVAKGDVK------ 65 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECTTCS---HHHHHHHHHHH-----TTCCEEEEESCTT------
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCcCHH---HHHHHHHHHHh-----cCCcEEEEECCCC------
Confidence 3579999999999999999999999875 67777 44432 11221111110 011223334 887
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+.++++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..+||++||..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~ 145 (247)
T 2hq1_A 66 NPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAG 145 (247)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhh
Confidence 5667766665 78999999997532 2345678899999999988877642 25689999999854
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..|.+.+.++ .++++++++||
T Consensus 146 ~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg 186 (247)
T 2hq1_A 146 IIGN---------------------------------------AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPG 186 (247)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ccCC---------------------------------------CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEE
Confidence 3211 011679999999999988764 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.+.++.... + +.........+ .....+++++|+|++++.++..... ...+++|++.+
T Consensus 187 ~v~t~~~~~-------~--~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v~g 243 (247)
T 2hq1_A 187 IIKTDMTDV-------L--PDKVKEMYLNN---------IPLKRFGTPEEVANVVGFLASDDSN-----YITGQVINIDG 243 (247)
T ss_dssp SBCCHHHHT-------S--CHHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred EEeccchhh-------c--chHHHHHHHhh---------CCCCCCCCHHHHHHHHHHHcCcccc-----cccCcEEEeCC
Confidence 987652111 0 01111111111 1123578999999999988765422 12478999987
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 244 G 244 (247)
T 2hq1_A 244 G 244 (247)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=161.27 Aligned_cols=233 Identities=15% Similarity=0.080 Sum_probs=153.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC------CHHHHHHhhHHHHHHhhhhc--CCCccc-CC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ------SPQQRIDKMLDTVAISLKFT--CSTSKE-SA 165 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~------~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl 165 (545)
+++|+++||||+|+||+++++.|++.|. +|+++.|+.... ...+.+..... .+... ...++. |+
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Dv 80 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEAGA---DIAICDRCENSDVVGYPLATADDLAETVA----LVEKTGRRCISAKVDV 80 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSCCTTCSSCCCCHHHHHHHHH----HHHHTTCCEEEEECCT
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCccccccccccccHHHHHHHHH----HHHhcCCeEEEEeCCC
Confidence 5689999999999999999999999975 688888874321 11223332211 11111 223334 88
Q ss_pred CCCCCCCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEE
Q psy16252 166 QAPDLGLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFT 228 (545)
Q Consensus 166 ~~~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v 228 (545)
+ +.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+..++|
T Consensus 81 ~------~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv 154 (281)
T 3s55_A 81 K------DRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIV 154 (281)
T ss_dssp T------CHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred C------CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEE
Confidence 8 5666666665 7899999999753 23567888999999999999986431 2457999
Q ss_pred EEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCC
Q psy16252 229 YVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFP 303 (545)
Q Consensus 229 ~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~ 303 (545)
++||..+..... ....|+.||+..+.+.+.++ .+++
T Consensus 155 ~isS~~~~~~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~ 195 (281)
T 3s55_A 155 TVSSMLGHSANF---------------------------------------AQASYVSSKWGVIGLTKCAAHDLVGYGIT 195 (281)
T ss_dssp EECCGGGGSCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEE
T ss_pred EECChhhcCCCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 999987653311 12679999999999988765 5899
Q ss_pred EEEEccceeeccCCCCCC---CCccCccch-HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCC
Q psy16252 304 VCIFRPSIVISTWKEPIP---GWIDNLYGP-TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKD 379 (545)
Q Consensus 304 ~~i~Rp~~i~g~~~~~~~---g~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~ 379 (545)
+.+++||.|.++...... .+......+ ..-...... ........+.+++|+|++++.++.....
T Consensus 196 vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~p~dvA~~v~~L~s~~~~----- 263 (281)
T 3s55_A 196 VNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFA-------SLHLQYAPFLKPEEVTRAVLFLVDEASS----- 263 (281)
T ss_dssp EEEEEECSBCSTTTSSHHHHHC-------CCHHHHHHHHH-------HHCSSSCSCBCHHHHHHHHHHHHSGGGT-----
T ss_pred EEEEecCcccCccccchhhhccccccccccchhHHHHHHH-------hhhccCcCCCCHHHHHHHHHHHcCCccc-----
Confidence 999999999887432100 000000000 000000000 0112225688999999999998875432
Q ss_pred CCCCCEEEeecC
Q psy16252 380 PSCLPIYNYVNS 391 (545)
Q Consensus 380 ~~~~~vy~i~~~ 391 (545)
...++++++.++
T Consensus 264 ~itG~~i~vdgG 275 (281)
T 3s55_A 264 HITGTVLPIDAG 275 (281)
T ss_dssp TCCSCEEEESTT
T ss_pred CCCCCEEEECCC
Confidence 234789999887
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=159.46 Aligned_cols=219 Identities=13% Similarity=0.031 Sum_probs=148.7
Q ss_pred hcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+ |+||++++++|++.|+ +|+++.|+.. ..+.++++.. .. ....++. |++
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~~---~~~~~~~l~~----~~--~~~~~~~~D~~----- 68 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA---EVALSYQAER---LRPEAEKLAE----AL--GGALLFRADVT----- 68 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHTC---EEEEEESCGG---GHHHHHHHHH----HT--TCCEEEECCTT-----
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCCHH---HHHHHHHHHH----hc--CCcEEEECCCC-----
Confidence 457999999999 9999999999999975 6888888752 1222222111 11 1123334 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHcc-CCceEEEEec
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQCK-NLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~~-~~~~~v~vSS 232 (545)
+.++++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- +-.++|++||
T Consensus 69 -~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 147 (261)
T 2wyu_A 69 -QDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY 147 (261)
T ss_dssp -CHHHHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 5666666655 78999999997531 35567889999999999999997631 1258999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..+.... .....|+.||+..|.+.+.++ .+++++++
T Consensus 148 ~~~~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v 188 (261)
T 2wyu_A 148 YASEKVV---------------------------------------PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAI 188 (261)
T ss_dssp GGGTSBC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred ccccCCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEE
Confidence 8765321 111579999999999988765 48999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
+||.|.++..... .............. ....+.+++|+|++++.++..... ...+++++
T Consensus 189 ~Pg~v~t~~~~~~-------~~~~~~~~~~~~~~---------p~~~~~~~~dva~~v~~l~s~~~~-----~~tG~~~~ 247 (261)
T 2wyu_A 189 SAGPVRTVAARSI-------PGFTKMYDRVAQTA---------PLRRNITQEEVGNLGLFLLSPLAS-----GITGEVVY 247 (261)
T ss_dssp EECCCCCTGGGGC-------TTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred eeCCCcCchhhhc-------cccHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcChhhc-----CCCCCEEE
Confidence 9999988642211 11111222111110 112367899999999988764332 12478999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 248 vdgG 251 (261)
T 2wyu_A 248 VDAG 251 (261)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=160.19 Aligned_cols=226 Identities=11% Similarity=0.023 Sum_probs=149.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+... ..+.+..+.. .. .....++. |++ +
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~~~--~~~~~~~l~~----~~-~~~~~~~~~Dl~------~ 75 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA---NVAVIYRSAAD--AVEVTEKVGK----EF-GVKTKAYQCDVS------N 75 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCTT--HHHHHHHHHH----HH-TCCEEEEECCTT------C
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCcchh--hHHHHHHHHH----hc-CCeeEEEEeeCC------C
Confidence 4679999999999999999999999865 78889986432 1111111110 00 11233344 887 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v 235 (545)
.++++.+++ .+|+|||+||... ..+.++..+++|+.|+.++++++... +...+||++||..+
T Consensus 76 ~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~ 155 (265)
T 1h5q_A 76 TDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSS 155 (265)
T ss_dssp HHHHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchh
Confidence 566666554 4899999999753 23556788999999999999987652 22478999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
........ .+ ......|+.||+..|.+++.++ .+++++++|||
T Consensus 156 ~~~~~~~~-----~~---------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg 203 (265)
T 1h5q_A 156 QIINQSSL-----NG---------------------------SLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPG 203 (265)
T ss_dssp TSCCEEET-----TE---------------------------ECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred hccccccc-----cc---------------------------cccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 53221000 00 0112679999999999998765 48999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++..... . .......... .....+++++|+|++++.++..... ...+++|++.+
T Consensus 204 ~v~t~~~~~~-------~--~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v~g 260 (265)
T 1h5q_A 204 YVNTDQTAHM-------D--KKIRDHQASN---------IPLNRFAQPEEMTGQAILLLSDHAT-----YMTGGEYFIDG 260 (265)
T ss_dssp SBCCGGGGGS-------C--HHHHHHHHHT---------CTTSSCBCGGGGHHHHHHHHSGGGT-----TCCSCEEEECT
T ss_pred cccccccccc-------c--hhHHHHHHhc---------CcccCCCCHHHHHHHHHhhccCchh-----cCcCcEEEecC
Confidence 9988642211 0 1111111111 1112478999999999998765432 12478999887
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 261 G 261 (265)
T 1h5q_A 261 G 261 (265)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-17 Score=156.54 Aligned_cols=229 Identities=16% Similarity=0.112 Sum_probs=151.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC-------CHHHHHHhhHHHHHHhhhhcC--CCccc-C
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ-------SPQQRIDKMLDTVAISLKFTC--STSKE-S 164 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~-------~~~~rl~~~~~~~~~~~~~~~--~~~~~-D 164 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|..... ...+++++... .+.... ..++. |
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D 85 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEGA---DIIACDICAPVSASVTYAPASPEDLDETAR----LVEDQGRKALTRVLD 85 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECCSCCCTTCCSCCCCHHHHHHHHH----HHHTTTCCEEEEECC
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeccccccccccccccCHHHHHHHHH----HHHhcCCeEEEEEcC
Confidence 5789999999999999999999999975 688888853211 01233333222 122112 22333 8
Q ss_pred CCCCCCCCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH----ccCCce
Q psy16252 165 AQAPDLGLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ----CKNLKM 226 (545)
Q Consensus 165 l~~~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~ 226 (545)
++ +.++++++++ ++|++|||||... ..+.++..+++|+.|+.++++++.. .+.-.+
T Consensus 86 v~------~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~ 159 (280)
T 3pgx_A 86 VR------DDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGS 159 (280)
T ss_dssp TT------CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEE
T ss_pred CC------CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCE
Confidence 88 5667766654 7899999999753 2356788899999999999998754 222468
Q ss_pred EEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cC
Q psy16252 227 FTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QF 301 (545)
Q Consensus 227 ~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~ 301 (545)
+|++||..+..... ....|+.||+..+.+.+.++ .+
T Consensus 160 iv~isS~~~~~~~~---------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~g 200 (280)
T 3pgx_A 160 IVVVSSSAGLKATP---------------------------------------GNGHYSASKHGLTALTNTLAIELGEYG 200 (280)
T ss_dssp EEEECCGGGTSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEcchhhccCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999987653211 11679999999999888765 58
Q ss_pred CCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcC--ceeEEecCCCCcccceehHHHHHHHHhcccccccccCCC
Q psy16252 302 FPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAG--VVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKD 379 (545)
Q Consensus 302 l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~ 379 (545)
+++.+++||.|.++... ........... ....+.........++.++|+|++++.++.....
T Consensus 201 i~vn~v~PG~v~t~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~----- 264 (280)
T 3pgx_A 201 IRVNSIHPYSVETPMIE-----------PEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSG----- 264 (280)
T ss_dssp EEEEEEEECSBCSTTCC-----------HHHHHHHHHHCGGGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGGT-----
T ss_pred eEEEEEeeCcccCcccc-----------hhhhhhhhhcCchhhhhhhhcccCCCCCCCHHHHHHHHHHHhCcccc-----
Confidence 99999999999886321 11111111000 0000001111222488999999999988765432
Q ss_pred CCCCCEEEeecC
Q psy16252 380 PSCLPIYNYVNS 391 (545)
Q Consensus 380 ~~~~~vy~i~~~ 391 (545)
...++++++.++
T Consensus 265 ~itG~~i~vdGG 276 (280)
T 3pgx_A 265 TLTGTQIPVDKG 276 (280)
T ss_dssp TCSSCEEEESTT
T ss_pred CCCCCEEEECCC
Confidence 124789988776
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=158.54 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=147.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++.... ..+.. ...++. |++ +
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~----~~~~~-~~~~~~~D~~------d 69 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGA---TVAIADLDVM------AAQAVV----AGLEN-GGFAVEVDVT------K 69 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHH----HTCTT-CCEEEECCTT------C
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHH----HHHhc-CCeEEEEeCC------C
Confidence 4579999999999999999999999875 6888888631 222211 11111 223334 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cC-CceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KN-LKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~-~~~~v~vSS~~v 235 (545)
.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..++|++||..+
T Consensus 70 ~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 149 (263)
T 3ak4_A 70 RASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAA 149 (263)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 677777665 79999999996532 2457888999999999999887652 13 579999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..|.+.+.++ .+++++++|||
T Consensus 150 ~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg 190 (263)
T 3ak4_A 150 KVGA---------------------------------------PLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPG 190 (263)
T ss_dssp TSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEC
T ss_pred ccCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecc
Confidence 5321 112679999999999887764 58999999999
Q ss_pred eeeccCCCCCCCC---ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 311 IVISTWKEPIPGW---IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 311 ~i~g~~~~~~~g~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
.|.++.......+ ..+. ........... ......+++++|+|++++.++..... ...+++|+
T Consensus 191 ~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~p~~~~~~~~dvA~~v~~l~s~~~~-----~~tG~~~~ 255 (263)
T 3ak4_A 191 FVKTAMQEREIIWEAELRGM-TPEAVRAEYVS---------LTPLGRIEEPEDVADVVVFLASDAAR-----FMTGQGIN 255 (263)
T ss_dssp SBTTHHHHHHHHHHHHHHTS-CHHHHHHHHHH---------TCTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred cccChhhhhhcccccccccc-CcHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCcccc-----CCCCCEEE
Confidence 9987521100000 0000 00011111111 11123588999999999988865432 12478999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 256 vdgG 259 (263)
T 3ak4_A 256 VTGG 259 (263)
T ss_dssp ESSS
T ss_pred ECcC
Confidence 9876
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=159.77 Aligned_cols=216 Identities=12% Similarity=0.056 Sum_probs=146.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. .+.... +.. ....++. |++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~~----~~~~~~--------l~~~~~~~~~~~~D~~----- 61 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGA---NIVLNGFGDP----APALAE--------IARHGVKAVHHPADLS----- 61 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEECSSCC----HHHHHH--------HHTTSCCEEEECCCTT-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCch----HHHHHH--------HHhcCCceEEEeCCCC-----
Confidence 3579999999999999999999999875 6888888754 111111 111 1122333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~ 233 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+ ++. +..++|++||.
T Consensus 62 -~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~ 139 (255)
T 2q2v_A 62 -DVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR-NWGRIINIASV 139 (255)
T ss_dssp -SHHHHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcCc
Confidence 6677777766 89999999996531 3567888999999888777765 343 56899999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.++.... ....|+.||+..+.+.+.++ .+++++++|
T Consensus 140 ~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 180 (255)
T 2q2v_A 140 HGLVGST---------------------------------------GKAAYVAAKHGVVGLTKVVGLETATSNVTCNAIC 180 (255)
T ss_dssp GGTSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEE
T ss_pred hhccCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEe
Confidence 7653211 11579999999999988765 589999999
Q ss_pred cceeeccCCCCCCCCccCccc-hHHH---H----HHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCC
Q psy16252 309 PSIVISTWKEPIPGWIDNLYG-PTGL---V----TGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDP 380 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~-~~~~---~----~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~ 380 (545)
||.|.++.... ... .... . .... ........+++++|+|++++.++..... .
T Consensus 181 Pg~v~t~~~~~-------~~~~~~~~~~~~~~~~~~~~--------~~~~p~~~~~~~~dvA~~~~~l~s~~~~-----~ 240 (255)
T 2q2v_A 181 PGWVLTPLVQK-------QIDDRAANGGDPLQAQHDLL--------AEKQPSLAFVTPEHLGELVLFLCSEAGS-----Q 240 (255)
T ss_dssp ESSBCCHHHHH-------HHHHHHHHTCCHHHHHHHHH--------TTTCTTCCCBCHHHHHHHHHHHTSGGGT-----T
T ss_pred eCCCcCcchhh-------hcccccccccchHHHHHHHH--------hccCCCCCCcCHHHHHHHHHHHhCCccC-----C
Confidence 99998752110 000 0000 0 0110 1112234589999999999988765432 1
Q ss_pred CCCCEEEeecC
Q psy16252 381 SCLPIYNYVNS 391 (545)
Q Consensus 381 ~~~~vy~i~~~ 391 (545)
..+++|++.++
T Consensus 241 ~tG~~~~vdgG 251 (255)
T 2q2v_A 241 VRGAAWNVDGG 251 (255)
T ss_dssp CCSCEEEESTT
T ss_pred CCCCEEEECCC
Confidence 24789998876
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-17 Score=158.02 Aligned_cols=221 Identities=15% Similarity=0.129 Sum_probs=147.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++..... .+... ...++. |++
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~----- 68 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGA---SVYTCSRNQK------ELNDCLT----QWRSKGFKVEASVCDLS----- 68 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHHTTCEEEEEECCTT-----
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCcEEEEEcCCC-----
Confidence 4689999999999999999999999875 6888888632 2222111 11111 223333 887
Q ss_pred CCHHHHHHHh--------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVT--------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~--------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~ 233 (545)
+.++++.++ .++|+|||+||.... .+.++..+++|+.|+.++++++.. ..+..++|++||.
T Consensus 69 -~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~ 147 (260)
T 2ae2_A 69 -SRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSV 147 (260)
T ss_dssp -CHHHHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcch
Confidence 566666665 579999999996532 356778899999999999998853 1256899999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..|.+.+.++ .++++++++
T Consensus 148 ~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 188 (260)
T 2ae2_A 148 SGALAV---------------------------------------PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVG 188 (260)
T ss_dssp GGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEE
T ss_pred hhccCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEe
Confidence 765321 112679999999999998765 489999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++..... ... ......+...... .....+++++|+|++++.++..... ...++++++
T Consensus 189 Pg~v~t~~~~~~---~~~-~~~~~~~~~~~~~---------~~~~~~~~~~dvA~~v~~l~s~~~~-----~~tG~~~~v 250 (260)
T 2ae2_A 189 PGVIATSLVEMT---IQD-PEQKENLNKLIDR---------CALRRMGEPKELAAMVAFLCFPAAS-----YVTGQIIYV 250 (260)
T ss_dssp ECSBCSHHHHHH---TTS-HHHHHHHHHHHHT---------STTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred cCCCCCcchhhh---ccC-hhhHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccc-----CCCCCEEEE
Confidence 999876521100 000 0000100011111 1123478999999999988764322 124789998
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 251 dgG 253 (260)
T 2ae2_A 251 DGG 253 (260)
T ss_dssp STT
T ss_pred CCC
Confidence 876
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-17 Score=155.06 Aligned_cols=216 Identities=12% Similarity=0.091 Sum_probs=139.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+..... ....++. |++ +
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~~~~~------------------~~~~~~~~D~~------d 57 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGA---KVTGFDQAFTQEQ------------------YPFATEVMDVA------D 57 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCCCSSC------------------CSSEEEECCTT------C
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCchhhhc------------------CCceEEEcCCC------C
Confidence 4579999999999999999999999975 6888888754210 0112222 777 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v 235 (545)
.+++..+++ ++|+||||||.... .+.++..+++|+.|+.++++++. +. +..++|++||..+
T Consensus 58 ~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~ 136 (250)
T 2fwm_X 58 AAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQ-RGGAIVTVASDAA 136 (250)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhc-CCCEEEEECchhh
Confidence 667776665 78999999997532 35678899999999999999883 33 4679999999977
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..|.+.+.++ .+++++++|||
T Consensus 137 ~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg 177 (250)
T 2fwm_X 137 HTPR---------------------------------------IGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPG 177 (250)
T ss_dssp TSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEC
T ss_pred CCCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECC
Confidence 5321 112679999999999988765 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHH-HHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVT-GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
.|.++...... ....... .. ......+ ........+..++|+|++++.++..... ...++++++.
T Consensus 178 ~v~t~~~~~~~-------~~~~~~~~~~-~~~~~~~-~~~~p~~~~~~p~dvA~~v~~l~s~~~~-----~~tG~~i~vd 243 (250)
T 2fwm_X 178 STDTDMQRTLW-------VSDDAEEQRI-RGFGEQF-KLGIPLGKIARPQEIANTILFLASDLAS-----HITLQDIVVD 243 (250)
T ss_dssp CC---------------------------------------------CHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred cccCccccccc-------cChhHHHHHH-hhhhhcc-cccCCCCCCcCHHHHHHHHHHHhCcccc-----CCCCCEEEEC
Confidence 99886422110 0000000 00 0000000 0001112378899999999988865432 1247888887
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 244 GG 245 (250)
T 2fwm_X 244 GG 245 (250)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-17 Score=155.16 Aligned_cols=219 Identities=12% Similarity=0.029 Sum_probs=146.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|+||||||+||++++++|++.|+ +|+++.|+.. ++......+... ......++. |++ +.+
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~---~V~~~~r~~~------~~~~~~~~~~~~-~~~~~~~~~~D~~------~~~ 65 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD---RVAALDLSAE------TLEETARTHWHA-YADKVLRVRADVA------DEG 65 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHSTT-TGGGEEEEECCTT------CHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHHh-cCCcEEEEEecCC------CHH
Confidence 58999999999999999999999875 6888888632 222211111000 011223334 887 566
Q ss_pred HHHHHhc-------CccEEEEccccccc----------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 176 DKRLVTS-------KVNLVFHCAATLRF----------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 176 ~~~~l~~-------~vd~Vih~Aa~~~~----------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+.+++|++||..+
T Consensus 66 ~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 145 (250)
T 2cfc_A 66 DVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVAS 145 (250)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhh
Confidence 7776665 78999999996431 2456788999999998877766431 25689999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
+.... ....|+.||+..|.+++.++ .+++++++|||
T Consensus 146 ~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg 186 (250)
T 2cfc_A 146 LVAFP---------------------------------------GRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPG 186 (250)
T ss_dssp TSCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ccCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeC
Confidence 53211 12679999999999998765 48999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|+++.... .. ....+......+ .....+.+++|+|++++.++..... ...++++++.+
T Consensus 187 ~v~t~~~~~------~~-~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v~g 245 (250)
T 2cfc_A 187 MIETPMTQW------RL-DQPELRDQVLAR---------IPQKEIGTAAQVADAVMFLAGEDAT-----YVNGAALVMDG 245 (250)
T ss_dssp SBCSTTTHH------HH-TSHHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSTTCT-----TCCSCEEEEST
T ss_pred cCccCcccc------cc-CCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCchhh-----cccCCEEEECC
Confidence 998863211 00 001122222221 1123478999999999988765432 12478898877
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 246 G 246 (250)
T 2cfc_A 246 A 246 (250)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-17 Score=154.83 Aligned_cols=213 Identities=10% Similarity=0.055 Sum_probs=140.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCc-cc-CCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKFT--CSTS-KE-SAQAPDLG 171 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~-~~-Dl~~~~lg 171 (545)
+|+|+||||||+||++++++|++.|+ +|+++ .|+.. ++..... .+... .... +. |++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~---~v~~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~~D~~----- 62 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGF---ALAIHYGQNRE------KAEEVAE----EARRRGSPLVAVLGANLL----- 62 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESSCHH------HHHHHHH----HHHHTTCSCEEEEECCTT-----
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCHH------HHHHHHH----HHHhcCCceEEEEeccCC-----
Confidence 47899999999999999999999875 67776 56521 2221111 11111 2223 44 887
Q ss_pred CCHHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHH----HHHccCCceEEEEecc
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDL----AKQCKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~----a~~~~~~~~~v~vSS~ 233 (545)
+.++++.++ .++|+|||+||.... .+.++..+++|+.|+.++++. +++. +.++||++||.
T Consensus 63 -~~~~~~~~~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~sS~ 140 (245)
T 2ph3_A 63 -EAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKA-RFGRIVNITSV 140 (245)
T ss_dssp -SHHHHHHHHHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc-CCCEEEEEeCh
Confidence 556666654 379999999997532 345678899999996665554 4444 57899999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+..... ....|+.||+..|.+.+.++ .+++++++|
T Consensus 141 ~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 181 (245)
T 2ph3_A 141 VGILGNP---------------------------------------GQANYVASKAGLIGFTRAVAKEYAQRGITVNAVA 181 (245)
T ss_dssp HHHHCCS---------------------------------------SBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhccCCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEE
Confidence 6542210 11679999999888887764 489999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++..... . .........+. ....+++++|+|++++.++..... ...+++|++
T Consensus 182 Pg~v~t~~~~~~-------~--~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v 238 (245)
T 2ph3_A 182 PGFIETEMTERL-------P--QEVKEAYLKQI---------PAGRFGRPEEVAEAVAFLVSEKAG-----YITGQTLCV 238 (245)
T ss_dssp ECSBCCHHHHTS-------C--HHHHHHHHHTC---------TTCSCBCHHHHHHHHHHHTSGGGT-----TCCSCEEEE
T ss_pred EEeecCcchhhc-------C--HHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc-----cccCCEEEE
Confidence 999987632211 0 11111111111 123578999999999998865432 124789998
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 239 ~gg 241 (245)
T 2ph3_A 239 DGG 241 (245)
T ss_dssp STT
T ss_pred CCC
Confidence 876
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-17 Score=160.86 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=120.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+||||||+|+||+++++.|++.|+ +|++..|+..+.. .++++..... ... ......++. |++ +
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~---~V~~~~r~~~~r~-~~~~~~l~~~-~~~-~~~~~~~~~~Dvt------d 70 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGH---RVYASMRDIVGRN-ASNVEAIAGF-ARD-NDVDLRTLELDVQ------S 70 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCTTTTT-HHHHHHHHHH-HHH-HTCCEEEEECCTT------C
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEecCcccccC-HHHHHHHHHH-HHh-cCCcEEEEEeecC------C
Confidence 3578999999999999999999999976 7888888744332 2233222111 000 011233344 888 6
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v 235 (545)
.+++..+++ ++|+||||||... ..+.++..+++|+.|+.++++++ ++. +..++|++||..+
T Consensus 71 ~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV~isS~~~ 149 (324)
T 3u9l_A 71 QVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISSSSS 149 (324)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEecchh
Confidence 677777665 8999999999653 23556788999999999999988 443 5689999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... .....|+.||+..|.+.+.++ .|+++++++||
T Consensus 150 ~~~~~--------------------------------------~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG 191 (324)
T 3u9l_A 150 AGGTP--------------------------------------PYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPG 191 (324)
T ss_dssp TSCCC--------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEC
T ss_pred ccCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECC
Confidence 53210 112579999999999998775 58999999999
Q ss_pred eeecc
Q psy16252 311 IVIST 315 (545)
Q Consensus 311 ~i~g~ 315 (545)
.|.++
T Consensus 192 ~v~t~ 196 (324)
T 3u9l_A 192 AFTSG 196 (324)
T ss_dssp CC---
T ss_pred ccccC
Confidence 99765
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=155.73 Aligned_cols=215 Identities=13% Similarity=0.086 Sum_probs=143.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl 172 (545)
+|+|+||||||+||++++++|++.|+ +|+++ .|+.. ++..... .++. ....++. |++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~---~v~~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~------ 61 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGC---KVLVNYARSAK------AAEEVSK----QIEAYGGQAITFGGDVS------ 61 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHH------HHHHHHH----HHHHHTCEEEEEECCTT------
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCHH------HHHHHHH----HHHhcCCcEEEEeCCCC------
Confidence 48899999999999999999999875 57764 56521 1221111 1111 1222333 887
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+.++++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..+||++||..+
T Consensus 62 ~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~ 141 (244)
T 1edo_A 62 KEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVG 141 (244)
T ss_dssp SHHHHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhh
Confidence 5667777665 68999999997532 2557788999999999999888652 25689999999865
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..|.+.+.++ .+++++++|||
T Consensus 142 ~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg 182 (244)
T 1edo_A 142 LIGN---------------------------------------IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPG 182 (244)
T ss_dssp HHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEC
T ss_pred cCCC---------------------------------------CCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeC
Confidence 4221 011679999999988887664 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++.... .. ......... .. ....+++++|+|++++.++..+.. ....+++|++.+
T Consensus 183 ~v~t~~~~~-------~~--~~~~~~~~~-~~--------~~~~~~~~~dva~~~~~l~~~~~~----~~~~G~~~~v~g 240 (244)
T 1edo_A 183 FIASDMTAK-------LG--EDMEKKILG-TI--------PLGRTGQPENVAGLVEFLALSPAA----SYITGQAFTIDG 240 (244)
T ss_dssp SBCSHHHHT-------TC--HHHHHHHHT-SC--------TTCSCBCHHHHHHHHHHHHHCSGG----GGCCSCEEEEST
T ss_pred ccccchhhh-------cC--hHHHHHHhh-cC--------CCCCCCCHHHHHHHHHHHhCCCcc----CCcCCCEEEeCC
Confidence 998763211 00 111111111 11 113478999999999988743321 012478999887
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 241 G 241 (244)
T 1edo_A 241 G 241 (244)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-17 Score=154.78 Aligned_cols=219 Identities=12% Similarity=0.055 Sum_probs=146.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|... +++..... .+... ...++. |++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~~-----~~~~~~~~----~l~~~~~~~~~~~~D~~----- 67 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKA---KVVVNYRSKE-----DEANSVLE----EIKKVGGEAIAVKGDVT----- 67 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH-----HHHHHHHH----HHHHTTCEEEEEECCTT-----
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEcCCCh-----HHHHHHHH----HHHhcCCceEEEECCCC-----
Confidence 4679999999999999999999999875 6888888321 12222111 11111 222333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cC-CceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KN-LKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~-~~~~v~vSS~ 233 (545)
+.+++.++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..+||++||.
T Consensus 68 -~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~ 146 (261)
T 1gee_A 68 -VESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSV 146 (261)
T ss_dssp -SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCH
Confidence 5666666655 78999999997532 3556788999999999988877642 12 5799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..|.+.+.++ .+++++++|
T Consensus 147 ~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 187 (261)
T 1gee_A 147 HEKIPW---------------------------------------PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIG 187 (261)
T ss_dssp GGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred HhcCCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEe
Confidence 764321 111689999998888887654 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|+++.... .............. .....+++++|+|++++.++..... ...++++++
T Consensus 188 Pg~v~t~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~v 246 (261)
T 1gee_A 188 PGAINTPINAE-------KFADPEQRADVESM---------IPMGYIGEPEEIAAVAAWLASSEAS-----YVTGITLFA 246 (261)
T ss_dssp ECSBCSGGGHH-------HHHSHHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eCCcCCchhhh-------cccChhHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccc-----CCCCcEEEE
Confidence 99998863210 00001111111111 1123578999999999988764322 124789998
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 247 ~gg 249 (261)
T 1gee_A 247 DGG 249 (261)
T ss_dssp STT
T ss_pred cCC
Confidence 876
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-17 Score=154.56 Aligned_cols=214 Identities=10% Similarity=0.009 Sum_probs=143.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+. +++..... .+ .....++. |++ +
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~------~~~~~~~~----~~-~~~~~~~~~D~~------~ 62 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGA---RVVLADVLD------EEGAATAR----EL-GDAARYQHLDVT------I 62 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----TT-GGGEEEEECCTT------C
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHH----Hh-CCceeEEEecCC------C
Confidence 4579999999999999999999999875 688888863 22222111 11 11222333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v 235 (545)
.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+ ++. +..++|++||..+
T Consensus 63 ~~~~~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~ 141 (254)
T 1hdc_A 63 EEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAAG 141 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhh
Confidence 666766665 79999999997532 3567888999999998665544 443 5689999999976
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
+... .....|+.||+..+.+.+.++ .+++++++|||
T Consensus 142 ~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg 182 (254)
T 1hdc_A 142 LMGL---------------------------------------ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPG 182 (254)
T ss_dssp TSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ccCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecc
Confidence 5321 112679999999999887764 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccce-ehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIV-PADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v-~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
.|.++... .........+ ........+. +++|+|++++.++..... ...++++++.
T Consensus 183 ~v~t~~~~-----------------~~~~~~~~~~-~~~~p~~~~~~~~~dvA~~v~~l~s~~~~-----~~tG~~~~vd 239 (254)
T 1hdc_A 183 MTYTPMTA-----------------ETGIRQGEGN-YPNTPMGRVGNEPGEIAGAVVKLLSDTSS-----YVTGAELAVD 239 (254)
T ss_dssp SBCCHHHH-----------------HHTCCCSTTS-CTTSTTSSCB-CHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred cCcCcccc-----------------ccchhHHHHH-HhcCCCCCCCCCHHHHHHHHHHHhCchhc-----CCCCCEEEEC
Confidence 99775211 0000000000 0001112366 899999999988765432 1247889888
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 240 gG 241 (254)
T 1hdc_A 240 GG 241 (254)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.3e-17 Score=155.74 Aligned_cols=217 Identities=12% Similarity=0.065 Sum_probs=150.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh---cCCCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF---TCSTSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~---~~~~~~~-Dl~~~~l 170 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. +++.... .++. ....++. |++
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~~Dv~---- 70 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAGA---NVAVAGRSTA------DIDACVA----DLDQLGSGKVIGVQTDVS---- 70 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHTTSSSCEEEEECCTT----
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhhCCCcEEEEEcCCC----
Confidence 5689999999999999999999999975 6888888632 2222111 1211 1223344 888
Q ss_pred CCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+..++|++||.
T Consensus 71 --~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~ 148 (262)
T 3pk0_A 71 --DRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSI 148 (262)
T ss_dssp --SHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCS
T ss_pred --CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEech
Confidence 5666666654 7999999999753 23567888999999999999887653 245799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+..... .....|+.||+..+.+.+.++ .++++.+++
T Consensus 149 ~~~~~~~--------------------------------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~ 190 (262)
T 3pk0_A 149 TGPITGY--------------------------------------PGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIM 190 (262)
T ss_dssp BTTTBCC--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred hhccCCC--------------------------------------CCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEE
Confidence 7531100 112679999999999998765 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++..... ............ ....+..++|+|++++.++..... ...++++++
T Consensus 191 PG~v~t~~~~~~---------~~~~~~~~~~~~---------p~~r~~~p~dva~~v~~L~s~~~~-----~itG~~i~v 247 (262)
T 3pk0_A 191 PGNIMTEGLLEN---------GEEYIASMARSI---------PAGALGTPEDIGHLAAFLATKEAG-----YITGQAIAV 247 (262)
T ss_dssp ECSBCCHHHHTT---------CHHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eCcCcCcccccc---------CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc-----CCcCCEEEE
Confidence 999988632110 012222222211 112367899999999988765432 235889999
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 248 dGG 250 (262)
T 3pk0_A 248 DGG 250 (262)
T ss_dssp STT
T ss_pred CCC
Confidence 887
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-17 Score=162.67 Aligned_cols=239 Identities=13% Similarity=0.071 Sum_probs=156.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC----CCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK----NQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQA 167 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~----~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~ 167 (545)
+++|+||||||+|+||+++++.|++.|. +|+++.|+.. .....++++.... .+.... ..++. |++
T Consensus 25 l~gk~vlVTGas~GIG~aia~~la~~G~---~Vv~~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Dv~- 96 (322)
T 3qlj_A 25 VDGRVVIVTGAGGGIGRAHALAFAAEGA---RVVVNDIGVGLDGSPASGGSAAQSVVD----EITAAGGEAVADGSNVA- 96 (322)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECCCBCTTSSBTCTTSHHHHHHH----HHHHTTCEEEEECCCTT-
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCcccccccccccHHHHHHHHH----HHHhcCCcEEEEECCCC-
Confidence 6789999999999999999999999975 6888877511 0000112222111 111111 22333 887
Q ss_pred CCCCCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHcc----C-----C
Q psy16252 168 PDLGLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQCK----N-----L 224 (545)
Q Consensus 168 ~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~~----~-----~ 224 (545)
+.+++..+++ ++|++|||||... ..+.++..+++|+.|+.++++++...- . -
T Consensus 97 -----d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (322)
T 3qlj_A 97 -----DWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVD 171 (322)
T ss_dssp -----SHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -----CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCC
Confidence 5666666655 7899999999753 235678889999999999999875420 0 1
Q ss_pred ceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----
Q psy16252 225 KMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----- 299 (545)
Q Consensus 225 ~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----- 299 (545)
.++|++||..+.... .....|+.||+..+.+.+.++
T Consensus 172 g~IV~isS~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~e~~~ 212 (322)
T 3qlj_A 172 GRIINTSSGAGLQGS---------------------------------------VGQGNYSAAKAGIATLTLVGAAEMGR 212 (322)
T ss_dssp EEEEEECCHHHHHCB---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cEEEEEcCHHHccCC---------------------------------------CCCccHHHHHHHHHHHHHHHHHHhcc
Confidence 489999998765321 112679999999999987765
Q ss_pred cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCC
Q psy16252 300 QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKD 379 (545)
Q Consensus 300 ~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~ 379 (545)
.++++..++|| +..+.... +.... .........++.++|||++++.++.....
T Consensus 213 ~gI~vn~v~PG-~~t~~~~~---~~~~~------------------~~~~~~~~~~~~pedva~~v~~L~s~~~~----- 265 (322)
T 3qlj_A 213 YGVTVNAIAPS-ARTRMTET---VFAEM------------------MATQDQDFDAMAPENVSPLVVWLGSAEAR----- 265 (322)
T ss_dssp GTEEEEEEEEC-TTSCCSCC---SCCC--------------------------CCTTCGGGTHHHHHHHTSGGGG-----
T ss_pred cCcEEEEecCC-CCCccchh---hhhhh------------------hhccccccCCCCHHHHHHHHHHHhCcccc-----
Confidence 68999999999 54332111 00000 00112223567899999999988765432
Q ss_pred CCCCCEEEeecCCC---------------CcccHHHHHHHHHHhhccc
Q psy16252 380 PSCLPIYNYVNSKD---------------NPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 380 ~~~~~vy~i~~~~~---------------~~~t~~el~~~l~~~~~~~ 412 (545)
...+.++++.++.. ..++..|+++.+.+.++..
T Consensus 266 ~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~ 313 (322)
T 3qlj_A 266 DVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLGKA 313 (322)
T ss_dssp GCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHHHS
T ss_pred CCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhhcc
Confidence 12478888877621 1347799999999887753
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-17 Score=156.20 Aligned_cols=209 Identities=14% Similarity=0.077 Sum_probs=141.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+||||||+|+||+++++.|++.|+ +|+++.|+... ..+.+ ......++. |++ +
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~--~~~~~-----------~~~~~~~~~~Dv~------~ 82 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEHGH---RVIISYRTEHA--SVTEL-----------RQAGAVALYGDFS------C 82 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHTTC---CEEEEESSCCH--HHHHH-----------HHHTCEEEECCTT------S
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCChHH--HHHHH-----------HhcCCeEEECCCC------C
Confidence 5689999999999999999999999976 58888887532 11111 111233444 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~ 237 (545)
.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..+..
T Consensus 83 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~ 162 (260)
T 3gem_A 83 ETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK 162 (260)
T ss_dssp HHHHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC
Confidence 666666654 68999999996531 2456778999999999999987642 2457899999987653
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVI 313 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~ 313 (545)
... ....|+.||+..+.+.+.++ +++++.+++||.|.
T Consensus 163 ~~~---------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~ 203 (260)
T 3gem_A 163 GSS---------------------------------------KHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLM 203 (260)
T ss_dssp CCS---------------------------------------SCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTC
T ss_pred CCC---------------------------------------CcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccc
Confidence 211 12679999999999988765 56999999999986
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
++.... ......... .....-+..++|+|++++.++..... .++++++.++
T Consensus 204 t~~~~~-----------~~~~~~~~~---------~~p~~r~~~~edva~~v~~L~~~~~i-------tG~~i~vdGG 254 (260)
T 3gem_A 204 FQPKDD-----------AAYRANALA---------KSALGIEPGAEVIYQSLRYLLDSTYV-------TGTTLTVNGG 254 (260)
T ss_dssp C-----------------------------------CCSCCCCCTHHHHHHHHHHHHCSSC-------CSCEEEESTT
T ss_pred cCCCCC-----------HHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHhhCCCC-------CCCEEEECCC
Confidence 642110 011111111 01112355689999999988744333 5889999887
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=159.56 Aligned_cols=214 Identities=12% Similarity=0.089 Sum_probs=145.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.... +.+.. .+ .....++. |++ +
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~---~~~~~-------~~-~~~~~~~~~D~~------~ 69 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQGA---SAVLLDLPNSGG---EAQAK-------KL-GNNCVFAPADVT------S 69 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTSSH---HHHHH-------HH-CTTEEEEECCTT------C
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCcHhH---HHHHH-------Hh-CCceEEEEcCCC------C
Confidence 4679999999999999999999999875 688888875421 11111 11 11223334 887 6
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------------chHHHHHHHHHhHHHHHHHHHHHHHc---c------CC
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------------FDEELKEAIRTNMCATQTMLDLAKQC---K------NL 224 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~------~~ 224 (545)
.+++.++++ ++|+|||+||... ..+.++..+++|+.|+.++++++... . +.
T Consensus 70 ~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (265)
T 2o23_A 70 EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQR 149 (265)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCC
Confidence 667777665 7999999999752 23457788999999999999988763 1 45
Q ss_pred ceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----
Q psy16252 225 KMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----- 299 (545)
Q Consensus 225 ~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----- 299 (545)
.++|++||.+++... .....|+.||+..+.+.+.++
T Consensus 150 ~~iv~isS~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~ 190 (265)
T 2o23_A 150 GVIINTASVAAFEGQ---------------------------------------VGQAAYSASKGGIVGMTLPIARDLAP 190 (265)
T ss_dssp EEEEEECCTHHHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cEEEEeCChhhcCCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 789999999765321 112679999999888887654
Q ss_pred cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCC
Q psy16252 300 QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKD 379 (545)
Q Consensus 300 ~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~ 379 (545)
.++++++++||.|.++.....+ .......... . +. ...+++++|+|++++.++.....
T Consensus 191 ~gi~v~~v~Pg~v~t~~~~~~~---------~~~~~~~~~~-~---~~----~~~~~~~~dva~~~~~l~~~~~~----- 248 (265)
T 2o23_A 191 IGIRVMTIAPGLFGTPLLTSLP---------EKVCNFLASQ-V---PF----PSRLGDPAEYAHLVQAIIENPFL----- 248 (265)
T ss_dssp GTEEEEEEEECCBCCC-------------------CHHHHT-C---SS----SCSCBCHHHHHHHHHHHHHCTTC-----
T ss_pred cCcEEEEEEeccccCccccccC---------HHHHHHHHHc-C---CC----cCCCCCHHHHHHHHHHHhhcCcc-----
Confidence 5899999999999775321110 0000000010 0 00 12468899999999988764433
Q ss_pred CCCCCEEEeecC
Q psy16252 380 PSCLPIYNYVNS 391 (545)
Q Consensus 380 ~~~~~vy~i~~~ 391 (545)
.++++++.++
T Consensus 249 --~G~~i~vdgG 258 (265)
T 2o23_A 249 --NGEVIRLDGA 258 (265)
T ss_dssp --CSCEEEESTT
T ss_pred --CceEEEECCC
Confidence 5788988776
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-16 Score=153.33 Aligned_cols=215 Identities=16% Similarity=0.075 Sum_probs=150.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|+.... +.+.. .+ .....++. |++ +
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~---~~~~~-------~~-~~~~~~~~~Dv~------~ 68 (271)
T 3tzq_B 9 LENKVAIITGACGGIGLETSRVLARAGA---RVVLADLPETDL---AGAAA-------SV-GRGAVHHVVDLT------N 68 (271)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTSCH---HHHHH-------HH-CTTCEEEECCTT------C
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEcCCHHHH---HHHHH-------Hh-CCCeEEEECCCC------C
Confidence 5689999999999999999999999975 688888875421 11111 11 11223333 888 6
Q ss_pred HHHHHHHhc-------CccEEEEccccccc---------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF---------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTA 233 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~---------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~ 233 (545)
.+++..+++ ++|++||+||.... .+.++..+++|+.|+.++++++ ++. +..++|++||.
T Consensus 69 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~ 147 (271)
T 3tzq_B 69 EVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISSA 147 (271)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCH
Confidence 667776665 78999999997521 3556788999999999999988 443 56799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+..... ....|+.||+..+.+.+.++ .++++.+++
T Consensus 148 ~~~~~~~---------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~ 188 (271)
T 3tzq_B 148 TAHAAYD---------------------------------------MSTAYACTKAAIETLTRYVATQYGRHGVRCNAIA 188 (271)
T ss_dssp GGTSBCS---------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HHcCCCC---------------------------------------CChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEE
Confidence 7653311 12689999999999988765 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++.... .. ........... .....+..++|+|++++.++..... ...++++++
T Consensus 189 PG~v~t~~~~~------~~--~~~~~~~~~~~---------~~~~r~~~p~dvA~~v~~L~s~~~~-----~itG~~i~v 246 (271)
T 3tzq_B 189 PGLVRTPRLEV------GL--PQPIVDIFATH---------HLAGRIGEPHEIAELVCFLASDRAA-----FITGQVIAA 246 (271)
T ss_dssp ECCBCCTTTC-----------CHHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eCCCcCccccc------cC--CHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccC-----CcCCCEEEE
Confidence 99998864321 11 11222222221 1122367899999999988765432 235789998
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 247 dGG 249 (271)
T 3tzq_B 247 DSG 249 (271)
T ss_dssp STT
T ss_pred CCC
Confidence 876
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-17 Score=155.73 Aligned_cols=219 Identities=13% Similarity=0.016 Sum_probs=148.6
Q ss_pred hcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+ |+||+++++.|++.|+ +|+++.|+.. ..+.+.++.. .. ....++. |++
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~~---~~~~~~~l~~----~~--~~~~~~~~D~~----- 69 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGA---ELAFTYQNDK---LKGRVEEFAA----QL--GSDIVLQCDVA----- 69 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC---EEEEEESSTT---THHHHHHHHH----HT--TCCCEEECCTT-----
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEEcCcHH---HHHHHHHHHH----hc--CCcEEEEccCC-----
Confidence 467999999999 9999999999999875 6888888752 1222222111 11 1123344 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc------------chHHHHHHHHHhHHHHHHHHHHHHHcc-CCceEEEEe
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR------------FDEELKEAIRTNMCATQTMLDLAKQCK-NLKMFTYVS 231 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~------------~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~~~~~v~vS 231 (545)
+.+++..+++ ++|+|||+||... ..+.++..+++|+.|+.++++++...- +-.++|++|
T Consensus 70 -~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (265)
T 1qsg_A 70 -EDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 148 (265)
T ss_dssp -CHHHHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEc
Confidence 5666766665 6899999999653 124567789999999999999997631 124899999
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
|..+.... .....|+.||+..|.+.+.++ .++++++
T Consensus 149 S~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~ 189 (265)
T 1qsg_A 149 YLGAERAI---------------------------------------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNA 189 (265)
T ss_dssp CGGGTSBC---------------------------------------TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEE
T ss_pred chhhccCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEE
Confidence 98765321 011579999999999998765 4899999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
++||.|.++..... ............+. ....+.+++|+|++++.++..... ...++++
T Consensus 190 v~PG~v~t~~~~~~-------~~~~~~~~~~~~~~---------p~~~~~~~~dva~~v~~l~s~~~~-----~~tG~~~ 248 (265)
T 1qsg_A 190 ISAGPIRTLAASGI-------KDFRKMLAHCEAVT---------PIRRTVTIEDVGNSAAFLCSDLSA-----GISGEVV 248 (265)
T ss_dssp EEECCCCCTTGGGS-------TTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHTSGGGT-----TCCSCEE
T ss_pred EEeCCCccchhhcc-------cccHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCchhc-----CccCCEE
Confidence 99999988642211 11112222211111 012367899999999988765332 1247899
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
++.++
T Consensus 249 ~vdgG 253 (265)
T 1qsg_A 249 HVDGG 253 (265)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 98876
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=154.39 Aligned_cols=220 Identities=13% Similarity=0.102 Sum_probs=146.5
Q ss_pred hcCcEEEEecccc-ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATG-FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatG-flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+++|+|+||||+| .||++++++|++.|+ +|+++.|... ++......+ .........++. |++
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~---~V~~~~r~~~------~~~~~~~~l-~~~~~~~~~~~~~Dl~------ 83 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA---DVVISDYHER------RLGETRDQL-ADLGLGRVEAVVCDVT------ 83 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHH-HTTCSSCEEEEECCTT------
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC---EEEEecCCHH------HHHHHHHHH-HhcCCCceEEEEeCCC------
Confidence 5789999999998 599999999999975 6888888632 222211111 001111233444 888
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEeccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAF 234 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~ 234 (545)
+.++++.+++ .+|+|||+||... ..+.++..+++|+.|+.++++.+... ++..++|++||..
T Consensus 84 ~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~ 163 (266)
T 3o38_A 84 STEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVL 163 (266)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHH
Confidence 5666666654 6799999999743 23567888999999999999988753 2456899999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..+.+.+.++ .++++.+++|
T Consensus 164 ~~~~~---------------------------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~P 204 (266)
T 3o38_A 164 GWRAQ---------------------------------------HSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSP 204 (266)
T ss_dssp GTCCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred HcCCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeC
Confidence 65321 112679999999999988764 6899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++..... . ...... ..........+.+++|+|++++.++..... ...++++++.
T Consensus 205 G~v~t~~~~~~-------~-~~~~~~---------~~~~~~~~~r~~~~~dva~~i~~l~s~~~~-----~~tG~~i~vd 262 (266)
T 3o38_A 205 SIARHKFLEKT-------S-SSELLD---------RLASDEAFGRAAEPWEVAATIAFLASDYSS-----YMTGEVVSVS 262 (266)
T ss_dssp CCCCC----------------------------------CCTTSSCCCHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred Ccccchhhhcc-------C-cHHHHH---------HHHhcCCcCCCCCHHHHHHHHHHHcCcccc-----CccCCEEEEc
Confidence 99877532110 0 000000 011122334578999999999988765432 2357899987
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 263 gG 264 (266)
T 3o38_A 263 SQ 264 (266)
T ss_dssp SC
T ss_pred CC
Confidence 75
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-16 Score=153.99 Aligned_cols=222 Identities=11% Similarity=0.068 Sum_probs=145.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEec-CCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR-AKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R-~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
+++|+|+||||+|+||+++++.|++.|+ +|+++.| +. +++......+-. .......++. |++++.-
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~-- 76 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGF---RVVVHYRHSE------GAAQRLVAELNA-ARAGSAVLCKGDLSLSSS-- 76 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH------HHHHHHHHHHHH-HSTTCEEEEECCCSSSTT--
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCCh------HHHHHHHHHHHH-hcCCceEEEeccCCCccc--
Confidence 4679999999999999999999999875 6888888 42 222221111100 0011233344 8884310
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-------h-----------HHHHHHHHHhHHHHHHHHHHHHHc--cCC-
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-------D-----------EELKEAIRTNMCATQTMLDLAKQC--KNL- 224 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~-----------~~~~~~~~~Nv~gt~~ll~~a~~~--~~~- 224 (545)
..+++..+++ ++|+||||||.... . +.++..+++|+.|+.++++++... .+.
T Consensus 77 ~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~ 156 (276)
T 1mxh_A 77 LLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGA 156 (276)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-----
T ss_pred cHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCC
Confidence 0045555554 78999999996532 1 567788999999999999998873 133
Q ss_pred -----ceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc
Q psy16252 225 -----KMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA 299 (545)
Q Consensus 225 -----~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~ 299 (545)
.++|++||..++... .....|+.||+..+.+.+.++
T Consensus 157 ~~~~~g~iv~isS~~~~~~~---------------------------------------~~~~~Y~asK~a~~~l~~~la 197 (276)
T 1mxh_A 157 WRSRNLSVVNLCDAMTDLPL---------------------------------------PGFCVYTMAKHALGGLTRAAA 197 (276)
T ss_dssp --CCCEEEEEECCGGGGSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECchhhcCCC---------------------------------------CCCeehHHHHHHHHHHHHHHH
Confidence 799999998775321 111579999999999988765
Q ss_pred -----cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 300 -----QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 300 -----~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
.++++++++||.|.++ . . + . .......... .+ ...++.+++|+|++++.++.....
T Consensus 198 ~e~~~~gi~v~~v~PG~v~t~-~-~---~-----~-~~~~~~~~~~-~p-------~~r~~~~~~dva~~v~~l~s~~~~ 258 (276)
T 1mxh_A 198 LELAPRHIRVNAVAPGLSLLP-P-A---M-----P-QETQEEYRRK-VP-------LGQSEASAAQIADAIAFLVSKDAG 258 (276)
T ss_dssp HHHGGGTEEEEEEEESSBSCC-S-S---S-----C-HHHHHHHHTT-CT-------TTSCCBCHHHHHHHHHHHHSGGGT
T ss_pred HHHhhcCeEEEEEecCcccCC-c-c---C-----C-HHHHHHHHhc-CC-------CCCCCCCHHHHHHHHHHHhCcccc
Confidence 4899999999999886 1 1 1 0 1122222211 11 012278999999999988765332
Q ss_pred ccCCCCCCCCEEEeecC
Q psy16252 375 RFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 375 ~~~~~~~~~~vy~i~~~ 391 (545)
...+.++++.++
T Consensus 259 -----~~tG~~~~vdgG 270 (276)
T 1mxh_A 259 -----YITGTTLKVDGG 270 (276)
T ss_dssp -----TCCSCEEEESTT
T ss_pred -----CccCcEEEECCc
Confidence 124788988776
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=153.76 Aligned_cols=231 Identities=10% Similarity=0.072 Sum_probs=145.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+. +++......+-.........++. |++ +
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~------~ 69 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGA---RLLLFSRNR------EKLEAAASRIASLVSGAQVDIVAGDIR------E 69 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHHHHSTTCCEEEEECCTT------C
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHHHHHhcCCCCeEEEEEccCC------C
Confidence 4579999999999999999999999875 688888863 22222111110000011233344 888 6
Q ss_pred HHHHHHHhc------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccccc
Q psy16252 174 PDDKRLVTS------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~~------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~ 237 (545)
.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||..++.
T Consensus 70 ~~~v~~~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 149 (260)
T 2z1n_A 70 PGDIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLR 149 (260)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcC
Confidence 677777765 59999999996431 3567888999999997777766431 2568999999997764
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
... ....|+.||+..+.+.+.++ .+++++++|||.|
T Consensus 150 ~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v 190 (260)
T 2z1n_A 150 PWQ---------------------------------------DLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLI 190 (260)
T ss_dssp CCT---------------------------------------TBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHH
T ss_pred CCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCc
Confidence 311 11579999999999887764 5899999999999
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++...... .............. ...+ ........+.+++|+|++++.++..... ...++++++.++
T Consensus 191 ~t~~~~~~~---~~~~~~~~~~~~~~---~~~~-~~~~p~~r~~~~~dva~~v~~l~s~~~~-----~~tG~~i~vdGG 257 (260)
T 2z1n_A 191 LTDRVRSLA---EERARRSGITVEEA---LKSM-ASRIPMGRVGKPEELASVVAFLASEKAS-----FITGAVIPVDGG 257 (260)
T ss_dssp HHCCCC------------------------------CCTTSSCCCHHHHHHHHHHHTSGGGT-----TCCSCEEEESTT
T ss_pred ccchhhhhh---hhhhcccCCcHHHH---HHHH-HhcCCCCCccCHHHHHHHHHHHhCcccc-----CCCCCEEEeCCC
Confidence 886422100 00000000000000 0000 0011122477999999999998765432 124788888765
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-17 Score=156.74 Aligned_cols=217 Identities=13% Similarity=0.064 Sum_probs=145.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl 172 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++..... .+.. ....++. |++
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~D~~------ 64 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGA---KVMITGRHSD------VGEKAAK----SVGTPDQIQFFQHDSS------ 64 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHCCTTTEEEEECCTT------
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HhhccCceEEEECCCC------
Confidence 4679999999999999999999999875 6888888632 2222111 1111 1233344 887
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCC-ceEEEEeccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNL-KMFTYVSTAF 234 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~-~~~v~vSS~~ 234 (545)
+.+++..+++ .+|+|||+||... ..+.++..+++|+.|+.++++.+... .+. .+||++||..
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~ 144 (251)
T 1zk4_A 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIE 144 (251)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCch
Confidence 5666766665 4899999999753 13456788999999988877765431 244 7999999997
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEE
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIF 307 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~ 307 (545)
++.... ....|+.||+..|.+.+.++ .+++++++
T Consensus 145 ~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v 185 (251)
T 1zk4_A 145 GFVGDP---------------------------------------SLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTV 185 (251)
T ss_dssp GTSCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred hccCCC---------------------------------------CCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEE
Confidence 654311 12689999999999887643 47999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
|||.|+++.....+ ......... .......+++++|+|++++.++..... ...+++++
T Consensus 186 ~Pg~v~t~~~~~~~---------~~~~~~~~~--------~~~~~~~~~~~~dva~~~~~l~~~~~~-----~~~G~~~~ 243 (251)
T 1zk4_A 186 HPGYIKTPLVDDLP---------GAEEAMSQR--------TKTPMGHIGEPNDIAYICVYLASNESK-----FATGSEFV 243 (251)
T ss_dssp EECCBCCHHHHTST---------THHHHHTST--------TTCTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred eeCcCcchhhhhcC---------chhhhHHHh--------hcCCCCCCcCHHHHHHHHHHHcCcccc-----cccCcEEE
Confidence 99999886322110 011111011 111123478999999999998865432 12478999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 244 v~gG 247 (251)
T 1zk4_A 244 VDGG 247 (251)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8876
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=153.98 Aligned_cols=227 Identities=10% Similarity=0.006 Sum_probs=145.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||+++++.|++.|+ +|+++.|+.. ++......+-.........++. |++ +
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~------~ 75 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGA---KLSLVDVSSE------GLEASKAAVLETAPDAEVLTTVADVS------D 75 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHHHHCTTCCEEEEECCTT------S
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHhhcCCceEEEEEccCC------C
Confidence 5689999999999999999999999875 6888888632 2222111110000011223334 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEeccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAF 234 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~ 234 (545)
.++++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+. +. +..++|++||..
T Consensus 76 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~ 154 (267)
T 1iy8_A 76 EAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ-GSGMVVNTASVG 154 (267)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchh
Confidence 666766665 68999999996532 25678889999999887766553 33 567999999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+..... ....|+.||+..+.+.+.++ .++++++++|
T Consensus 155 ~~~~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~P 195 (267)
T 1iy8_A 155 GIRGIG---------------------------------------NQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAP 195 (267)
T ss_dssp GTSBCS---------------------------------------SBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred hccCCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEe
Confidence 653210 11679999999999887664 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++...... .................. .....+..++|+|++++.++..... ...+.++++.
T Consensus 196 G~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~---------~p~~r~~~~~dvA~~v~~l~s~~~~-----~~tG~~i~vd 260 (267)
T 1iy8_A 196 GAIWTPMVENSM-KQLDPENPRKAAEEFIQV---------NPSKRYGEAPEIAAVVAFLLSDDAS-----YVNATVVPID 260 (267)
T ss_dssp CSBCSHHHHHHH-HHHCTTCHHHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHTSGGGT-----TCCSCEEEES
T ss_pred CCCcCcchhccc-cccChhhhhhHHHHHhcc---------CCCCCCcCHHHHHHHHHHHcCcccc-----CCCCCEEEEC
Confidence 999775211000 000000000000011110 1112478999999999988765432 1247888888
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 261 GG 262 (267)
T 1iy8_A 261 GG 262 (267)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=157.09 Aligned_cols=214 Identities=12% Similarity=0.069 Sum_probs=144.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+||||||+|+||+++++.|++.|+ +|+++.|..... ....++. |++ +
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~-------------------~~~~~~~~Dl~------~ 57 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGS---KVIDLSIHDPGE-------------------AKYDHIECDVT------N 57 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESSCCCS-------------------CSSEEEECCTT------C
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEecCcccC-------------------CceEEEEecCC------C
Confidence 4689999999999999999999999975 688888875431 0122233 777 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 58 ~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 137 (264)
T 2dtx_A 58 PDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQAS 137 (264)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhc
Confidence 666666655 69999999997532 3567888999999999999888652 245799999999765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEcccee
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIV 312 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i 312 (545)
.... ....|+.||+..|.+.+.++ +.+++++++||.|
T Consensus 138 ~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v 178 (264)
T 2dtx_A 138 IITK---------------------------------------NASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATI 178 (264)
T ss_dssp SCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSB
T ss_pred cCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCC
Confidence 4211 11679999999999988765 2299999999998
Q ss_pred eccCCCCCCCCccCccchH----HHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 313 ISTWKEPIPGWIDNLYGPT----GLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
.++......... ..... ........ ......+++++|+|++++.++..... ...++++++
T Consensus 179 ~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~p~~~~~~p~dvA~~v~~l~s~~~~-----~~tG~~i~v 242 (264)
T 2dtx_A 179 DTPLVRKAAELE--VGSDPMRIEKKISEWGH---------EHPMQRIGKPQEVASAVAFLASREAS-----FITGTCLYV 242 (264)
T ss_dssp CSHHHHHHHHHH--HCSCHHHHHHHHHHHHH---------HSTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred cCcchhhhhhcc--cccCchhhHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCchhc-----CCCCcEEEE
Confidence 664210000000 00000 11111110 01123478999999999988765432 124788888
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 243 dGG 245 (264)
T 2dtx_A 243 DGG 245 (264)
T ss_dssp STT
T ss_pred CCC
Confidence 775
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=156.47 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=148.3
Q ss_pred hcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+ |+||+++++.|++.|+ +|+++.|+.. ..+.+..+.. .. ....++. |++
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~~---~~~~~~~l~~----~~--~~~~~~~~Dl~----- 81 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGA---QLAFTYATPK---LEKRVREIAK----GF--GSDLVVKCDVS----- 81 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTC---EEEEEESSGG---GHHHHHHHHH----HT--TCCCEEECCTT-----
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC---EEEEEeCCHH---HHHHHHHHHH----hc--CCeEEEEcCCC-----
Confidence 568999999999 9999999999999875 6888888752 2222222111 01 1233444 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHcc--CCceEEEEe
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQCK--NLKMFTYVS 231 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~~--~~~~~v~vS 231 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- +-.++|++|
T Consensus 82 -~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~is 160 (285)
T 2p91_A 82 -LDEDIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLS 160 (285)
T ss_dssp -CHHHHHHHHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEE
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 5666666654 68999999997532 24567889999999999999987641 226999999
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
|..+.... .....|+.||+..+.+.+.++ .++++++
T Consensus 161 S~~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~ 201 (285)
T 2p91_A 161 YYGAEKVV---------------------------------------PHYNVMGIAKAALESTVRYLAYDIAKHGHRINA 201 (285)
T ss_dssp CGGGTSBC---------------------------------------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred cchhccCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 98765321 111579999999999988765 5899999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
++||.|.++.....+ ............. ....+.+++|+|++++.++..... ...+.+|
T Consensus 202 v~PG~v~t~~~~~~~-------~~~~~~~~~~~~~---------p~~~~~~~~dva~~~~~l~s~~~~-----~~tG~~~ 260 (285)
T 2p91_A 202 ISAGPVKTLAAYSIT-------GFHLLMEHTTKVN---------PFGKPITIEDVGDTAVFLCSDWAR-----AITGEVV 260 (285)
T ss_dssp EEECCCCCSCC--CT-------THHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHTSGGGT-----TCCSCEE
T ss_pred EEeCcccCchhhccc-------chHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCCccc-----CCCCCEE
Confidence 999999886432111 1112221111110 012367899999999988764332 1247888
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
++.++
T Consensus 261 ~vdgg 265 (285)
T 2p91_A 261 HVDNG 265 (285)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 88876
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=158.71 Aligned_cols=218 Identities=11% Similarity=0.074 Sum_probs=147.4
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
.+++|+||||||+|+||+++++.|++.|. +|+++.|+...... ....+. |++
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~~~~~------------------~~~~~~~Dv~------ 63 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGA---KVVSVSLDEKSDVN------------------VSDHFKIDVT------ 63 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCC--CTT------------------SSEEEECCTT------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCchhccC------------------ceeEEEecCC------
Confidence 36789999999999999999999999975 68888887543210 112223 887
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+.+++..+++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..+
T Consensus 64 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~ 143 (269)
T 3vtz_A 64 NEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQS 143 (269)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhh
Confidence 5666666654 78999999997532 3556788999999999999887541 24579999999987
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccce
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSI 311 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~ 311 (545)
+.... ....|+.||+..|.+.+.++ +++++.+++||.
T Consensus 144 ~~~~~---------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~ 184 (269)
T 3vtz_A 144 YAATK---------------------------------------NAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGT 184 (269)
T ss_dssp TSBCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECS
T ss_pred ccCCC---------------------------------------CChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 64321 12689999999999998765 589999999999
Q ss_pred eeccCCCCCCCC--ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 312 VISTWKEPIPGW--IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 312 i~g~~~~~~~g~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.++........ ................ ......+..++|||++++.++..... ...++++++.
T Consensus 185 v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~-----~itG~~i~vd 250 (269)
T 3vtz_A 185 IMTPMVIKAAKMEVGEDENAVERKIEEWGR---------QHPMGRIGRPEEVAEVVAFLASDRSS-----FITGACLTVD 250 (269)
T ss_dssp BCCHHHHHHHHHHHCCSTTHHHHHHHHHHH---------HSTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred CcCcchhhhhhccccccchhhHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCCccC-----CCcCcEEEEC
Confidence 977521100000 0000000011111111 11223467899999999988765432 2358899998
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 251 GG 252 (269)
T 3vtz_A 251 GG 252 (269)
T ss_dssp TT
T ss_pred CC
Confidence 87
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=153.65 Aligned_cols=237 Identities=12% Similarity=0.071 Sum_probs=153.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC------CHHHHHHhhHHHHHHhhhhcCCCccc-CCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ------SPQQRIDKMLDTVAISLKFTCSTSKE-SAQA 167 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~------~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~ 167 (545)
+++|+||||||+|+||+++++.|++.|+ +|+++.|..... ...+++......+ ... .....++. |++
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~D~~- 84 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADGA---DIIAVDLCDQIASVPYPLATPEELAATVKLV-EDI-GSRIVARQADVR- 84 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECCSCCTTCSSCCCCHHHHHHHHHHH-HHH-TCCEEEEECCTT-
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEecccccccccccccchHHHHHHHHHH-Hhc-CCeEEEEeCCCC-
Confidence 5689999999999999999999999976 688888863211 1123333322211 000 11233344 888
Q ss_pred CCCCCCHHHHHHHhc-------CccEEEEccccccc---hHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecc
Q psy16252 168 PDLGLSPDDKRLVTS-------KVNLVFHCAATLRF---DEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTA 233 (545)
Q Consensus 168 ~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|++|||||.... .+.++..+++|+.|+.++++++... +.-.++|++||.
T Consensus 85 -----~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~ 159 (278)
T 3sx2_A 85 -----DRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSS 159 (278)
T ss_dssp -----CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred -----CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccH
Confidence 6667776665 78999999997642 4667889999999999999987542 124689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+...... +. + ....|+.||+..+.+.+.++ .++++..++
T Consensus 160 ~~~~~~~~--------~~-~--------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~ 204 (278)
T 3sx2_A 160 AGLAGVGS--------AD-P--------------------------GSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIH 204 (278)
T ss_dssp GGTSCCCC--------SS-H--------------------------HHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HhcCCCcc--------CC-C--------------------------CchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEe
Confidence 76533210 00 0 01579999999999888765 579999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHH-hcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGA-QAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
||.|.++.... .. ....+... .............. ..++.++|||++++.++..... ...+++++
T Consensus 205 PG~v~T~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~p-~~~~~p~dvA~~v~~l~s~~~~-----~itG~~i~ 270 (278)
T 3sx2_A 205 PSGVETPMINN-------EF-TREWLAKMAAATDTPGAMGNAMP-VEVLAPEDVANAVAWLVSDQAR-----YITGVTLP 270 (278)
T ss_dssp ESCBSSTTTSS-------HH-HHHHHHHHHHHCC--CTTSCSSS-CSSBCHHHHHHHHHHHTSGGGT-----TCCSCEEE
T ss_pred cCCccCccchh-------hh-HHHHHhhccchhhhhhhhhhhcC-cCcCCHHHHHHHHHHHhCcccc-----cccCCEEe
Confidence 99998763221 00 01111111 11100001111122 5788999999999988765432 23578999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 271 vdGG 274 (278)
T 3sx2_A 271 VDAG 274 (278)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8876
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-17 Score=154.34 Aligned_cols=215 Identities=13% Similarity=0.076 Sum_probs=142.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
.++|+||||||+|+||+++++.|++.|+ +|+++.|+. +++...... +. ....+.. |++ +
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~------~~~~~~~~~----~~-~~~~~~~~D~~------~ 71 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGS---KVIISGSNE------EKLKSLGNA----LK-DNYTIEVCNLA------N 71 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----HC-SSEEEEECCTT------S
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCH------HHHHHHHHH----hc-cCccEEEcCCC------C
Confidence 5689999999999999999999999875 688888853 222221111 11 1222223 777 5
Q ss_pred HHHHHHHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCC
Q psy16252 174 PDDKRLVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 174 ~~~~~~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~ 240 (545)
.+.+.++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..++....
T Consensus 72 ~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 151 (249)
T 3f9i_A 72 KEECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNP 151 (249)
T ss_dssp HHHHHHHHHTCSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCS
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCC
Confidence 677777766 68999999997532 2456788999999999998877531 2457999999987653211
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
....|+.||+..|.+.+.++ .++++.+++||.|.++
T Consensus 152 ---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~ 192 (249)
T 3f9i_A 152 ---------------------------------------GQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSD 192 (249)
T ss_dssp ---------------------------------------CSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC--
T ss_pred ---------------------------------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccC
Confidence 12679999999888887664 6899999999999776
Q ss_pred CCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
..... . ......... ......+.+++|+|++++.++..... ...++++++.++
T Consensus 193 ~~~~~-------~--~~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~s~~~~-----~~tG~~~~vdgG 245 (249)
T 3f9i_A 193 MTDKL-------N--EKQREAIVQ---------KIPLGTYGIPEDVAYAVAFLASNNAS-----YITGQTLHVNGG 245 (249)
T ss_dssp ----C-------C--HHHHHHHHH---------HCTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred ccccc-------C--HHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHcCCccC-----CccCcEEEECCC
Confidence 32211 1 111111111 11234578899999999988875432 124789999876
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=156.68 Aligned_cols=195 Identities=14% Similarity=0.115 Sum_probs=131.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+|+||||+|+||++++++|++.|. ..+|+++.|+.... +.+.. +......++. |++ +.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~-~~~V~~~~r~~~~~---~~l~~--------~~~~~~~~~~~D~~------~~ 63 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKN-IRHIIATARDVEKA---TELKS--------IKDSRVHVLPLTVT------CD 63 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTT-CCEEEEEESSGGGC---HHHHT--------CCCTTEEEEECCTT------CH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCC-CcEEEEEecCHHHH---HHHHh--------ccCCceEEEEeecC------CH
Confidence 468999999999999999999999861 13788999975432 11211 1111223334 887 56
Q ss_pred HHHHHHhc---------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc---c------C-----
Q psy16252 175 DDKRLVTS---------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC---K------N----- 223 (545)
Q Consensus 175 ~~~~~l~~---------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~------~----- 223 (545)
+++..+++ ++|+|||+||... ..+.++..+++|+.|+.++++++... . +
T Consensus 64 ~~~~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (250)
T 1yo6_A 64 KSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVS 143 (250)
T ss_dssp HHHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTT
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCC
Confidence 66666665 7999999999754 13556788999999999999887642 1 2
Q ss_pred CceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----
Q psy16252 224 LKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---- 299 (545)
Q Consensus 224 ~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---- 299 (545)
..+||++||..+...... +..++ .....|+.||+..|.+++.++
T Consensus 144 ~~~iv~isS~~~~~~~~~--~~~~~------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~ 191 (250)
T 1yo6_A 144 RAAVITISSGLGSITDNT--SGSAQ------------------------------FPVLAYRMSKAAINMFGRTLAVDLK 191 (250)
T ss_dssp TCEEEEECCGGGCSTTCC--STTSS------------------------------SCBHHHHHHHHHHHHHHHHHHHHTG
T ss_pred CcEEEEeccCccccCCcc--ccccc------------------------------CCccHHHHHHHHHHHHHHHHHHHhc
Confidence 579999999976543210 00000 112679999999999998765
Q ss_pred -cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 300 -QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 300 -~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
.+++++++|||.|.++... . ..+++++|+|++++.++....
T Consensus 192 ~~gi~v~~v~Pg~v~t~~~~---------------------~------------~~~~~~~~~a~~~~~~~~~~~ 233 (250)
T 1yo6_A 192 DDNVLVVNFCPGWVQTNLGG---------------------K------------NAALTVEQSTAELISSFNKLD 233 (250)
T ss_dssp GGTCEEEEEECCCC----------------------------------------------HHHHHHHHHHHTTCC
T ss_pred cCCeEEEEEcCCceecCCCC---------------------C------------CCCCCHHHHHHHHHHHHhccc
Confidence 4899999999998664110 0 135789999999999887654
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.6e-17 Score=160.11 Aligned_cols=217 Identities=15% Similarity=0.063 Sum_probs=132.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+||||||+|+||.+++++|++.|+ +|++..|+.. +++.....+-..-......++. |++ +
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~---~Vv~~~r~~~------~~~~~~~~l~~~~~~~~~~~~~~Dl~------~ 70 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC---KVAIADIRQD------SIDKALATLEAEGSGPEVMGVQLDVA------S 70 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHHHHTCGGGEEEEECCTT------C
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHHHHHhcCCCCeEEEEECCCC------C
Confidence 4579999999999999999999999976 6888888742 2222211110000001223344 888 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHcc---------CCceEEEE
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQCK---------NLKMFTYV 230 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~~---------~~~~~v~v 230 (545)
.+++..+++ .+|+|||+||... ..+.++..+++|+.|+.++++++...- +-.++|++
T Consensus 71 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~i 150 (319)
T 3ioy_A 71 REGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNT 150 (319)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEe
Confidence 666766664 6799999999642 235677889999999999999876531 23579999
Q ss_pred eccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHH----HHHHHHHHhc-cCCCEE
Q psy16252 231 STAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKA----AAEQLLCEEA-QFFPVC 305 (545)
Q Consensus 231 SS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~----~aE~~~~~~~-~~l~~~ 305 (545)
||..+.... .....|+.||+ ++|.+..++. .+++++
T Consensus 151 sS~a~~~~~---------------------------------------~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~ 191 (319)
T 3ioy_A 151 ASMAAFLAA---------------------------------------GSPGIYNTTKFAVRGLSESLHYSLLKYEIGVS 191 (319)
T ss_dssp CCGGGTCCC---------------------------------------SSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred cccccccCC---------------------------------------CCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEE
Confidence 999876432 11267999999 5555555544 689999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecC-CCCcccceehHHHHHHHHhccccc
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVD-PDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
+++||.|.++....... . ...+.............. .......+++++||++++.++...
T Consensus 192 ~v~PG~v~T~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~ 252 (319)
T 3ioy_A 192 VLCPGLVKSYIYASDDI------R-PDALKGEVKPVDKTAVERLAGVHEFGMEPDVIGARVIEAMKAN 252 (319)
T ss_dssp EECCCCBC------------------------------------CCGGGSSBCHHHHHHHHHHHHHTT
T ss_pred EEEcCeEccCccccccc------C-chhhcccccchhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHcC
Confidence 99999997753221100 0 000000000000000001 111112379999999999998654
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=153.45 Aligned_cols=219 Identities=14% Similarity=0.047 Sum_probs=144.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+. +++..... .+ .....++. |++ +
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~------~~~~~~~~----~~-~~~~~~~~~D~~------~ 63 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGA---KVAFSDINE------AAGQQLAA----EL-GERSMFVRHDVS------S 63 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECSCH------HHHHHHHH----HH-CTTEEEECCCTT------C
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHH----Hc-CCceEEEEccCC------C
Confidence 4689999999999999999999999875 688888863 22222111 11 11223344 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++++.+++ .+|+|||+||.... .+.++..+++|+.|+.++.+.+... .+ .++|++||..++
T Consensus 64 ~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~ 142 (253)
T 1hxh_A 64 EADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSW 142 (253)
T ss_dssp HHHHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhc
Confidence 666666654 47999999997532 3567888999999988877765431 24 799999999775
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----c--CCCEEEEcc
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----Q--FFPVCIFRP 309 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~--~l~~~i~Rp 309 (545)
.... ....|+.||+..|.+.+.++ . +++++++||
T Consensus 143 ~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~P 183 (253)
T 1hxh_A 143 LPIE---------------------------------------QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHP 183 (253)
T ss_dssp SCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CCCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEe
Confidence 4211 11579999999999988765 3 899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|+++..... ...... ........ .......+..++|+|++++.++..... ...++++++.
T Consensus 184 g~v~t~~~~~~--~~~~~~------~~~~~~~~-----~~~p~~~~~~~~dvA~~~~~l~s~~~~-----~~tG~~~~vd 245 (253)
T 1hxh_A 184 DGIYTPMMQAS--LPKGVS------KEMVLHDP-----KLNRAGRAYMPERIAQLVLFLASDESS-----VMSGSELHAD 245 (253)
T ss_dssp SEECCHHHHHH--SCTTCC------HHHHBCBT-----TTBTTCCEECHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred CCccCchhhhc--cchhhh------HHHHhhhh-----ccCccCCCCCHHHHHHHHHHHcCcccc-----CCCCcEEEEC
Confidence 99988631100 000000 00000000 001112478999999999998865432 1247888887
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 246 gG 247 (253)
T 1hxh_A 246 NS 247 (253)
T ss_dssp SS
T ss_pred CC
Confidence 76
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.9e-17 Score=157.25 Aligned_cols=220 Identities=10% Similarity=0.064 Sum_probs=149.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+||||||+|+||++++++|++.|. +|+++.|+... ..+.+...... ......++. |++ +
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~--~~~~~~~~~~~-----~~~~~~~~~~Dv~------d 108 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGA---NIAIAYLDEEG--DANETKQYVEK-----EGVKCVLLPGDLS------D 108 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCHH--HHHHHHHHHHT-----TTCCEEEEESCTT------S
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCchH--HHHHHHHHHHh-----cCCcEEEEECCCC------C
Confidence 5789999999999999999999999975 68888886421 11111111110 011223334 888 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEecccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~ 237 (545)
.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+-.++|++||..++.
T Consensus 109 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~ 188 (291)
T 3ijr_A 109 EQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYE 188 (291)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcC
Confidence 666666654 7899999999642 23567889999999999999999863 2335899999997653
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||+..|.+.+.++ .++++.+++||.|
T Consensus 189 ~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v 229 (291)
T 3ijr_A 189 GN---------------------------------------ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPI 229 (291)
T ss_dssp CC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSB
T ss_pred CC---------------------------------------CCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCC
Confidence 21 112679999999999988765 5899999999999
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++... .... ........ .......+..++|+|++++.++..... ...++++++.++
T Consensus 230 ~T~~~~-------~~~~-~~~~~~~~---------~~~p~~r~~~p~dvA~~v~~L~s~~~~-----~itG~~i~vdGG 286 (291)
T 3ijr_A 230 WTPLIP-------SSFD-EKKVSQFG---------SNVPMQRPGQPYELAPAYVYLASSDSS-----YVTGQMIHVNGG 286 (291)
T ss_dssp CSTHHH-------HHSC-HHHHHHTT---------TTSTTSSCBCGGGTHHHHHHHHSGGGT-----TCCSCEEEESSS
T ss_pred cCCccc-------ccCC-HHHHHHHH---------ccCCCCCCcCHHHHHHHHHHHhCCccC-----CCcCCEEEECCC
Confidence 775210 0000 11111111 112234577899999999988765432 235789998876
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-17 Score=157.59 Aligned_cols=222 Identities=13% Similarity=0.103 Sum_probs=147.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||+++++.|++.|+ +|+++.|+.. +++.... .++.. ...++. |++
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~Dv~----- 81 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGL---RVFVCARGEE------GLRTTLK----ELREAGVEADGRTCDVR----- 81 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCceEEEECCCC-----
Confidence 5689999999999999999999999875 6888888632 2222111 11111 223333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-----cCCceEEEEec
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-----KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-----~~~~~~v~vSS 232 (545)
+.++++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||
T Consensus 82 -~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS 160 (277)
T 2rhc_B 82 -SVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS 160 (277)
T ss_dssp -CHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECC
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECc
Confidence 5666666654 68999999997432 3456788999999999999987653 13579999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..+.... .....|+.||+..|.+.+.++ .+++++++
T Consensus 161 ~~~~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v 201 (277)
T 2rhc_B 161 TGGKQGV---------------------------------------VHAAPYSASKHGVVGFTKALGLELARTGITVNAV 201 (277)
T ss_dssp GGGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccCC---------------------------------------CCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEE
Confidence 8764321 111679999999999888764 57999999
Q ss_pred ccceeeccCCCCCCCCccCccc-----hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCC
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYG-----PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSC 382 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~ 382 (545)
+||.|.++..... ...... .......... ......+++++|+|++++.++..... ...
T Consensus 202 ~PG~v~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~~~dvA~~v~~l~s~~~~-----~~t 264 (277)
T 2rhc_B 202 CPGFVETPMAASV---REHYSDIWEVSTEEAFDRITA---------RVPIGRYVQPSEVAEMVAYLIGPGAA-----AVT 264 (277)
T ss_dssp EECSBCSHHHHHH---HHHHHHHHTCCHHHHHHHHHH---------HSTTSSCBCHHHHHHHHHHHHSGGGT-----TCC
T ss_pred ecCcCcCchhhhh---hhhcccccccchHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCchhc-----CCC
Confidence 9999977521100 000000 0000111100 01123578999999999988765432 124
Q ss_pred CCEEEeecC
Q psy16252 383 LPIYNYVNS 391 (545)
Q Consensus 383 ~~vy~i~~~ 391 (545)
++++++.++
T Consensus 265 G~~~~vdGG 273 (277)
T 2rhc_B 265 AQALNVCGG 273 (277)
T ss_dssp SCEEEESTT
T ss_pred CcEEEECCC
Confidence 789998876
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-16 Score=153.89 Aligned_cols=219 Identities=14% Similarity=0.082 Sum_probs=140.9
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPD 169 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~ 169 (545)
+.++|+|+||||+|+||++++++|++.|. +|+++ .|+. +.++.... .+... ...++. |++
T Consensus 23 m~~~k~vlITGas~gIG~a~a~~l~~~G~---~V~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~Dl~--- 86 (272)
T 4e3z_A 23 MSDTPVVLVTGGSRGIGAAVCRLAARQGW---RVGVNYAANR------EAADAVVA----AITESGGEAVAIPGDVG--- 86 (272)
T ss_dssp -CCSCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCH------HHHHHHHH----HHHHTTCEEEEEECCTT---
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCCh------hHHHHHHH----HHHhcCCcEEEEEcCCC---
Confidence 34578999999999999999999999976 56555 4432 12222111 11111 223334 887
Q ss_pred CCCCHHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc------cCCceEE
Q psy16252 170 LGLSPDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC------KNLKMFT 228 (545)
Q Consensus 170 lgl~~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~------~~~~~~v 228 (545)
+.+++..+++ ++|+||||||.... .+.++..+++|+.|+.++++++... ++..++|
T Consensus 87 ---~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv 163 (272)
T 4e3z_A 87 ---NAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIV 163 (272)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEE
T ss_pred ---CHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 5666666654 68999999997532 3556788999999999999988653 1346899
Q ss_pred EEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCC
Q psy16252 229 YVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFP 303 (545)
Q Consensus 229 ~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~ 303 (545)
++||..+..... .....|+.||+..|.+++.++ .+++
T Consensus 164 ~isS~~~~~~~~--------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~ 205 (272)
T 4e3z_A 164 NVSSMAAILGSA--------------------------------------TQYVDYAASKAAIDTFTIGLAREVAAEGIR 205 (272)
T ss_dssp EECCTHHHHCCT--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEcchHhccCCC--------------------------------------CCcchhHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 999987643210 011569999999999887765 5899
Q ss_pred EEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCC
Q psy16252 304 VCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCL 383 (545)
Q Consensus 304 ~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~ 383 (545)
+++++||.|.++..... ......... ........+..++|+|++++.++..... ...+
T Consensus 206 v~~v~PG~v~t~~~~~~--------~~~~~~~~~---------~~~~~~~~~~~~edvA~~i~~l~s~~~~-----~~tG 263 (272)
T 4e3z_A 206 VNAVRPGIIETDLHASG--------GLPDRAREM---------APSVPMQRAGMPEEVADAILYLLSPSAS-----YVTG 263 (272)
T ss_dssp EEEEEECSBC-----------------------------------CCTTSSCBCHHHHHHHHHHHHSGGGT-----TCCS
T ss_pred EEEEecCCCcCCccccc--------CChHHHHHH---------hhcCCcCCCcCHHHHHHHHHHHhCCccc-----cccC
Confidence 99999999987632210 000010000 1112223466799999999998765432 2347
Q ss_pred CEEEeecC
Q psy16252 384 PIYNYVNS 391 (545)
Q Consensus 384 ~vy~i~~~ 391 (545)
++|++.++
T Consensus 264 ~~i~vdgG 271 (272)
T 4e3z_A 264 SILNVSGG 271 (272)
T ss_dssp CEEEESTT
T ss_pred CEEeecCC
Confidence 89998775
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=155.64 Aligned_cols=229 Identities=11% Similarity=0.064 Sum_probs=146.7
Q ss_pred hhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCC
Q psy16252 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQA 167 (545)
Q Consensus 91 ~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~ 167 (545)
....+++|++|||||+|+||+++++.|++.|. +|+++.|+. +++..... .++.. ...++. |++
T Consensus 18 ~~~m~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~------~~~~~~~~----~l~~~~~~~~~~~~Dv~- 83 (279)
T 3sju_A 18 GSHMSRPQTAFVTGVSSGIGLAVARTLAARGI---AVYGCARDA------KNVSAAVD----GLRAAGHDVDGSSCDVT- 83 (279)
T ss_dssp -------CEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHTTTCCEEEEECCTT-
T ss_pred cccccCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHH----HHHhcCCcEEEEECCCC-
Confidence 33446789999999999999999999999975 688888863 22222211 12221 222333 888
Q ss_pred CCCCCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc-----cCCceEE
Q psy16252 168 PDLGLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC-----KNLKMFT 228 (545)
Q Consensus 168 ~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-----~~~~~~v 228 (545)
+.+++..+++ .+|+|||+||... ..+.++..+++|+.|+.++++++... .+..++|
T Consensus 84 -----d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV 158 (279)
T 3sju_A 84 -----STDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIV 158 (279)
T ss_dssp -----CHHHHHHHHHHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEE
T ss_pred -----CHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEE
Confidence 5666666554 6899999999753 23557788999999999999987651 2457999
Q ss_pred EEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCC
Q psy16252 229 YVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFP 303 (545)
Q Consensus 229 ~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~ 303 (545)
++||..+.... .....|+.||+..+.+.+.++ .+++
T Consensus 159 ~isS~~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~ 199 (279)
T 3sju_A 159 NIASTGGKQGV---------------------------------------MYAAPYTASKHGVVGFTKSVGFELAKTGIT 199 (279)
T ss_dssp EECCGGGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEE
T ss_pred EECChhhccCC---------------------------------------CCChhHHHHHHHHHHHHHHHHHHHHhhCcE
Confidence 99998765321 112679999998888887664 6899
Q ss_pred EEEEccceeeccCCCCCC-CCccCcc-chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCC
Q psy16252 304 VCIFRPSIVISTWKEPIP-GWIDNLY-GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPS 381 (545)
Q Consensus 304 ~~i~Rp~~i~g~~~~~~~-g~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~ 381 (545)
+.+++||.|.++...... .+..... ........... ......+..++|||++++.++..... ..
T Consensus 200 vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~a~-----~i 265 (279)
T 3sju_A 200 VNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNA---------KIPLGRYSTPEEVAGLVGYLVTDAAA-----SI 265 (279)
T ss_dssp EEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHT---------TCTTSSCBCHHHHHHHHHHHTSSGGG-----GC
T ss_pred EEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHhCcccc-----Cc
Confidence 999999999775211000 0000000 01112222111 11223568899999999988765432 12
Q ss_pred CCCEEEeecC
Q psy16252 382 CLPIYNYVNS 391 (545)
Q Consensus 382 ~~~vy~i~~~ 391 (545)
.++++++.++
T Consensus 266 tG~~i~vdGG 275 (279)
T 3sju_A 266 TAQALNVCGG 275 (279)
T ss_dssp CSCEEEESTT
T ss_pred CCcEEEECCC
Confidence 4789998876
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=156.22 Aligned_cols=218 Identities=11% Similarity=0.050 Sum_probs=144.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+... .+.+...+.. . .....++. |++ +
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~~~---~~~~~~~~~~----~-~~~~~~~~~Dl~------~ 94 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAGA---DVAIWYNSHPA---DEKAEHLQKT----Y-GVHSKAYKCNIS------D 94 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHTC---EEEEEESSSCC---HHHHHHHHHH----H-CSCEEEEECCTT------C
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHHHHHh----c-CCcceEEEeecC------C
Confidence 5689999999999999999999999975 68888887543 1222211110 0 11223344 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc---------hHHHHHHHHHhHHH----HHHHHHHHHHccCCceEEEEecc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF---------DEELKEAIRTNMCA----TQTMLDLAKQCKNLKMFTYVSTA 233 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~---------~~~~~~~~~~Nv~g----t~~ll~~a~~~~~~~~~v~vSS~ 233 (545)
.+++..+++ .+|+|||+||.... .+.++..+++|+.| ++++++.+++. +.++||++||.
T Consensus 95 ~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~isS~ 173 (279)
T 3ctm_A 95 PKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN-GKGSLIITSSI 173 (279)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEECch
Confidence 666666665 48999999996532 23456788999999 55666666664 67899999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+..... . .....|+.||+..|.+++.++ .+ ++++++
T Consensus 174 ~~~~~~~--------~-----------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~ 215 (279)
T 3ctm_A 174 SGKIVNI--------P-----------------------------QLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTIS 215 (279)
T ss_dssp TTSCC----------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEE
T ss_pred HhccCCC--------C-----------------------------CCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEe
Confidence 7643200 0 011579999999999998765 46 999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++.... .. .......... . ....+++++|+|++++.++..... ...+.++++
T Consensus 216 Pg~v~t~~~~~--------~~-~~~~~~~~~~-~--------p~~~~~~~~dvA~~~~~l~s~~~~-----~~tG~~i~v 272 (279)
T 3ctm_A 216 PGYIDTDITDF--------AS-KDMKAKWWQL-T--------PLGREGLTQELVGGYLYLASNAST-----FTTGSDVVI 272 (279)
T ss_dssp ECSBSSTTTSS--------CC-HHHHHHHHHH-S--------TTCSCBCGGGTHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred ccCCccccccc--------cC-hHHHHHHHHh-C--------CccCCcCHHHHHHHHHHHhCcccc-----CccCCEEEE
Confidence 99997653210 11 1111111110 0 112478999999999998865432 124789998
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 273 dgG 275 (279)
T 3ctm_A 273 DGG 275 (279)
T ss_dssp STT
T ss_pred CCC
Confidence 876
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-16 Score=152.75 Aligned_cols=222 Identities=12% Similarity=0.076 Sum_probs=147.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||+++++.|++.|. +|+++.|+.. ++..... .+ .....++. |++ +
T Consensus 27 l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~~------~~~~~~~----~~-~~~~~~~~~Dv~------d 86 (277)
T 3gvc_A 27 LAGKVAIVTGAGAGIGLAVARRLADEGC---HVLCADIDGD------AADAAAT----KI-GCGAAACRVDVS------D 86 (277)
T ss_dssp CTTCEEEETTTTSTHHHHHHHHHHHTTC---EEEEEESSHH------HHHHHHH----HH-CSSCEEEECCTT------C
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----Hc-CCcceEEEecCC------C
Confidence 5789999999999999999999999975 6888888632 2222111 11 12233444 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+++..+++ ++|++|||||.... .+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 87 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~ 166 (277)
T 3gvc_A 87 EQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQ 166 (277)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc
Confidence 666666554 78999999997532 3567888999999999999887642 245689999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..+.+.+..+ .++++.+++||.
T Consensus 167 ~~~~---------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~ 207 (277)
T 3gvc_A 167 VAVG---------------------------------------GTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAF 207 (277)
T ss_dssp SCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred cCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCC
Confidence 3211 11679999999999988654 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.++.......... ... ......... ......+..++|+|++++.++..... ...++++++.++
T Consensus 208 v~t~~~~~~~~~~~-----~~~----~~~~~~~~~--~~~~~r~~~pedvA~~v~~L~s~~a~-----~itG~~i~vdGG 271 (277)
T 3gvc_A 208 VDTPMQQTAMAMFD-----GAL----GAGGARSMI--ARLQGRMAAPEEMAGIVVFLLSDDAS-----MITGTTQIADGG 271 (277)
T ss_dssp BCCHHHHHHHTCC---------------CCHHHHH--HHHHSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred ccCchHHHhhhcch-----hhH----HHHhhhhhh--hccccCCCCHHHHHHHHHHHcCCccC-----CccCcEEEECCc
Confidence 98752110000000 000 000000000 00112467899999999998865432 235789999877
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=154.03 Aligned_cols=219 Identities=14% Similarity=0.072 Sum_probs=141.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. +++..... + .....++. |++ +
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G~---~V~~~~r~~~------~~~~~~~~----~-~~~~~~~~~D~~------~ 66 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGGA---KVVIVDRDKA------GAERVAGE----I-GDAALAVAADIS------K 66 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHH----H-CTTEEEEECCTT------S
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCHH------HHHHHHHH----h-CCceEEEEecCC------C
Confidence 4689999999999999999999999875 6888888632 22221111 1 11223333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHcc-------CCceEEEEe
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQCK-------NLKMFTYVS 231 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~~-------~~~~~v~vS 231 (545)
.++++++++ ++|+||||||... ..+.++..+++|+.|+.++++++...- +..++|++|
T Consensus 67 ~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~is 146 (261)
T 3n74_A 67 EADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVA 146 (261)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeC
Confidence 666666655 7899999999753 235677889999999999988775420 134699999
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
|..+.... .....|+.||+..+.+.+.++ .++++..
T Consensus 147 S~~~~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~ 187 (261)
T 3n74_A 147 STGAGRPR---------------------------------------PNLAWYNATKGWVVSVTKALAIELAPAKIRVVA 187 (261)
T ss_dssp CTTTTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred chhhcCCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 98765321 112579999999999987765 5899999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
++||.|.++......+ .. ...... ..........++.++|+|++++.++..... ...++++
T Consensus 188 v~PG~v~t~~~~~~~~---~~--~~~~~~---------~~~~~~~~~~~~~~~dva~~~~~l~s~~~~-----~itG~~i 248 (261)
T 3n74_A 188 LNPVAGETPLLTTFMG---ED--SEEIRK---------KFRDSIPMGRLLKPDDLAEAAAFLCSPQAS-----MITGVAL 248 (261)
T ss_dssp EEEC---------------------------------------CTTSSCCCHHHHHHHHHHHTSGGGT-----TCCSCEE
T ss_pred EecCcccChhhhhhcc---cC--cHHHHH---------HHhhcCCcCCCcCHHHHHHHHHHHcCCccc-----CcCCcEE
Confidence 9999998763221100 00 000000 011122234588999999999988754332 2358899
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
++.++
T Consensus 249 ~vdgG 253 (261)
T 3n74_A 249 DVDGG 253 (261)
T ss_dssp EESTT
T ss_pred EecCC
Confidence 99887
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-16 Score=154.36 Aligned_cols=216 Identities=15% Similarity=0.145 Sum_probs=144.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||||+||+++++.|++.|. +|+++.|+.. +++... ..++.. ...++. |++
T Consensus 42 l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~~------~~~~~~----~~l~~~~~~~~~~~~Dl~----- 103 (285)
T 2c07_A 42 GENKVALVTGAGRGIGREIAKMLAKSVS---HVICISRTQK------SCDSVV----DEIKSFGYESSGYAGDVS----- 103 (285)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSS---EEEEEESSHH------HHHHHH----HHHHTTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCC---EEEEEcCCHH------HHHHHH----HHHHhcCCceeEEECCCC-----
Confidence 4679999999999999999999999865 6777777531 222211 112111 222333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.++++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++.+... .+..+||++||..
T Consensus 104 -d~~~v~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~ 182 (285)
T 2c07_A 104 -KKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIV 182 (285)
T ss_dssp -CHHHHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChh
Confidence 5667766653 6899999999753 23567788999999988888777531 2568999999986
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..|.+.+.++ .+++++++||
T Consensus 183 ~~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~P 223 (285)
T 2c07_A 183 GLTGN---------------------------------------VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAP 223 (285)
T ss_dssp HHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hccCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEe
Confidence 54321 112679999999988887764 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++.... .. ........... ....+++++|+|++++.++..... ...++++++.
T Consensus 224 g~v~t~~~~~-------~~--~~~~~~~~~~~---------~~~~~~~~~dvA~~~~~l~~~~~~-----~~~G~~i~v~ 280 (285)
T 2c07_A 224 GFISSDMTDK-------IS--EQIKKNIISNI---------PAGRMGTPEEVANLACFLSSDKSG-----YINGRVFVID 280 (285)
T ss_dssp CSBCC------------CC--HHHHHHHHTTC---------TTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred CcEecCchhh-------cC--HHHHHHHHhhC---------CCCCCCCHHHHHHHHHHHhCCCcC-----CCCCCEEEeC
Confidence 9997763221 11 11222221111 112478999999999988765432 1247889887
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 281 gG 282 (285)
T 2c07_A 281 GG 282 (285)
T ss_dssp TT
T ss_pred CC
Confidence 75
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=152.68 Aligned_cols=216 Identities=12% Similarity=0.077 Sum_probs=148.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|+ +|+++.|+.. ++..... .++.. ...++. |++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~----- 64 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGA---TVVGTATSQA------SAEKFEN----SMKEKGFKARGLVLNIS----- 64 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSHH------HHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCceEEEEecCC-----
Confidence 4579999999999999999999999875 6888888632 2222111 11111 223344 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.++++.+++ .+|+||||||... ..+.++..+++|+.|+.++++.+... .+..++|++||..
T Consensus 65 -~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~ 143 (247)
T 3lyl_A 65 -DIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVV 143 (247)
T ss_dssp -CHHHHHHHHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchh
Confidence 5666666654 5799999999753 23567888999999999999887542 2446999999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..+.+.+.++ .++++.+++|
T Consensus 144 ~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~P 184 (247)
T 3lyl_A 144 GSAGN---------------------------------------PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAP 184 (247)
T ss_dssp HHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hccCC---------------------------------------CCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEee
Confidence 65321 112689999998888877654 6899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++..... . ......... ......+.+++|+|++++.++..... ...++++++.
T Consensus 185 G~v~t~~~~~~-------~--~~~~~~~~~---------~~~~~~~~~~~dva~~i~~l~s~~~~-----~~tG~~i~vd 241 (247)
T 3lyl_A 185 GFIATDMTDKL-------T--DEQKSFIAT---------KIPSGQIGEPKDIAAAVAFLASEEAK-----YITGQTLHVN 241 (247)
T ss_dssp CSBCCTTTTTS-------C--HHHHHHHHT---------TSTTCCCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred CcEecccchhc-------c--HHHHHHHhh---------cCCCCCCcCHHHHHHHHHHHhCCCcC-----CccCCEEEEC
Confidence 99977633221 1 111111111 12234578999999999988765432 2347899998
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 242 gG 243 (247)
T 3lyl_A 242 GG 243 (247)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-16 Score=150.56 Aligned_cols=217 Identities=15% Similarity=0.036 Sum_probs=147.1
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
++|+||||||+|+||++++++|++.|+ +|+++ .|+. ++++.... .+... ...++. |++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~---~vv~~~~r~~------~~~~~~~~----~~~~~~~~~~~~~~Dv~----- 64 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY---NIVINYARSK------KAALETAE----EIEKLGVKVLVVKANVG----- 64 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSCH------HHHHHHHH----HHHTTTCCEEEEECCTT-----
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC---EEEEEcCCCH------HHHHHHHH----HHHhcCCcEEEEEcCCC-----
Confidence 579999999999999999999999976 56665 5542 12222111 11111 223334 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+..++|++||..
T Consensus 65 -~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~ 143 (258)
T 3oid_A 65 -QPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLG 143 (258)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchh
Confidence 5666666654 5699999998642 13556788999999999999988541 2457999999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..+.+.+.++ .++++.+++|
T Consensus 144 ~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~P 184 (258)
T 3oid_A 144 SIRYL---------------------------------------ENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSG 184 (258)
T ss_dssp GTSBC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEE
T ss_pred hCCCC---------------------------------------CCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEee
Confidence 65321 112689999999999998765 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++..... ............. .....+..++|+|++++.++..... ...++++++.
T Consensus 185 G~v~T~~~~~~-------~~~~~~~~~~~~~---------~p~~r~~~~~dva~~v~~L~s~~~~-----~itG~~i~vd 243 (258)
T 3oid_A 185 GAIDTDALKHF-------PNREDLLEDARQN---------TPAGRMVEIKDMVDTVEFLVSSKAD-----MIRGQTIIVD 243 (258)
T ss_dssp CCBCSGGGGGC-------TTHHHHHHHHHHH---------CTTSSCBCHHHHHHHHHHHTSSTTT-----TCCSCEEEES
T ss_pred CCCcChhhhhc-------ccCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccC-----CccCCEEEEC
Confidence 99977632211 1111222222111 1123478899999999988865432 2358899998
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 244 GG 245 (258)
T 3oid_A 244 GG 245 (258)
T ss_dssp TT
T ss_pred CC
Confidence 87
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=150.96 Aligned_cols=195 Identities=13% Similarity=0.168 Sum_probs=137.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCc----CEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRV----KTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPD 169 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v----~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~ 169 (545)
+|+|+||||+|+||++++++|++.|+.. ..|+++.|+.. ++.... ..+.. ....++. |++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~------~~~~~~----~~~~~~~~~~~~~~~D~~--- 68 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAA------DLEKIS----LECRAEGALTDTITADIS--- 68 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHH------HHHHHH----HHHHTTTCEEEEEECCTT---
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHH------HHHHHH----HHHHccCCeeeEEEecCC---
Confidence 6899999999999999999999987510 06888888631 222211 11111 1223344 887
Q ss_pred CCCCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEec
Q psy16252 170 LGLSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVST 232 (545)
Q Consensus 170 lgl~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS 232 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..+||++||
T Consensus 69 ---~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 145 (244)
T 2bd0_A 69 ---DMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITS 145 (244)
T ss_dssp ---SHHHHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred ---CHHHHHHHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 5666766665 69999999997532 3567888999999999999987541 25689999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..++.... ....|+.||+..|.+++.++ .+++++++
T Consensus 146 ~~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v 186 (244)
T 2bd0_A 146 VAATKAFR---------------------------------------HSSIYCMSKFGQRGLVETMRLYARKCNVRITDV 186 (244)
T ss_dssp GGGTSCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred chhcCCCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHhhccCcEEEEE
Confidence 98764211 12679999999999986553 68999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
|||.|+++.....+. . . ...+++++|+|++++.++....
T Consensus 187 ~Pg~v~t~~~~~~~~-------------------------~-~-~~~~~~~~dva~~~~~l~~~~~ 225 (244)
T 2bd0_A 187 QPGAVYTPMWGKVDD-------------------------E-M-QALMMMPEDIAAPVVQAYLQPS 225 (244)
T ss_dssp EECCBCSTTTCCCCS-------------------------T-T-GGGSBCHHHHHHHHHHHHTSCT
T ss_pred ECCCccchhhhhccc-------------------------c-c-cccCCCHHHHHHHHHHHHhCCc
Confidence 999998864221100 0 0 2368899999999999887543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-16 Score=151.33 Aligned_cols=215 Identities=15% Similarity=0.114 Sum_probs=147.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||++++++|++.|. +|++..|+.. +++.... .+. .....+. |++ +
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~-~~~~~~~~Dv~------d 66 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERGA---KVIGTATSES------GAQAISD----YLG-DNGKGMALNVT------N 66 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSHH------HHHHHHH----HHG-GGEEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----Hhc-ccceEEEEeCC------C
Confidence 4689999999999999999999999976 6888888632 2222111 111 1122333 888 6
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 67 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~ 146 (248)
T 3op4_A 67 PESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGT 146 (248)
T ss_dssp HHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhc
Confidence 667766665 7899999999753 23567888999999999999987541 245799999998664
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+.++ .++++..++||.
T Consensus 147 ~~~---------------------------------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~ 187 (248)
T 3op4_A 147 MGN---------------------------------------AGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGF 187 (248)
T ss_dssp HCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred CCC---------------------------------------CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCC
Confidence 321 112679999998888887664 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|..+..... . .........+ .....+..++|+|++++.++..... ...++++++.++
T Consensus 188 v~T~~~~~~-------~--~~~~~~~~~~---------~p~~r~~~p~dva~~v~~L~s~~~~-----~itG~~i~vdgG 244 (248)
T 3op4_A 188 IETDMTKAL-------N--DEQRTATLAQ---------VPAGRLGDPREIASAVAFLASPEAA-----YITGETLHVNGG 244 (248)
T ss_dssp BSSTTTTTS-------C--HHHHHHHHHT---------CTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred CCCchhhhc-------C--HHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCCccC-----CccCcEEEECCC
Confidence 976532211 1 1111111111 1123478899999999988765432 234789998876
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=158.07 Aligned_cols=232 Identities=10% Similarity=-0.005 Sum_probs=139.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+||||+|+||++++++|++.|+ +|+++.|+...... . +. |++ +.++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~~~~~~--------------------~-~~~Dl~------~~~~ 51 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGH---QIVGIDIRDAEVIA--------------------D-LSTAEG------RKQA 51 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSSSEEC--------------------C-TTSHHH------HHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCchhhcc--------------------c-cccCCC------CHHH
Confidence 6899999999999999999999875 68888887543210 0 11 554 4556
Q ss_pred HHHHhc----CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCcccccccCC
Q psy16252 177 KRLVTS----KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKNIEEIIYKA 249 (545)
Q Consensus 177 ~~~l~~----~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~i~E~~~~~ 249 (545)
++.+++ ++|+||||||......+++..+++|+.|+.++++++... .+..++|++||..++.....
T Consensus 52 v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 123 (257)
T 1fjh_A 52 IADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFD-------- 123 (257)
T ss_dssp HHHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGG--------
T ss_pred HHHHHHHhCCCCCEEEECCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccc--------
Confidence 666664 459999999986534558889999999999999988641 24579999999987632110
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhh-hcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCCCCCC
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRER-LSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
+.+.+..+... +.+........ ........|+.||...|.+.+.++ .++++++++||.|.++.....
T Consensus 124 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--- 196 (257)
T 1fjh_A 124 KNPLALALEAG----EEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG--- 196 (257)
T ss_dssp GCTTHHHHHHT----CHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------------
T ss_pred cchhhhhhccc----chhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhh---
Confidence 00001110000 00000000000 000012689999999999998765 589999999999977632110
Q ss_pred ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 324 IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
. .......... .+ ......+++++|+|++++.++..... ...++++++.++
T Consensus 197 ----~-~~~~~~~~~~----~~---~~~~~~~~~~~dvA~~~~~l~~~~~~-----~~tG~~~~vdgG 247 (257)
T 1fjh_A 197 ----L-QDPRYGESIA----KF---VPPMGRRAEPSEMASVIAFLMSPAAS-----YVHGAQIVIDGG 247 (257)
T ss_dssp ---------------------C---CCSTTSCCCTHHHHHHHHHHTSGGGT-----TCCSCEEEESTT
T ss_pred ----c-cchhHHHHHH----hc---ccccCCCCCHHHHHHHHHHHhCchhc-----CCcCCEEEECCC
Confidence 0 0000000000 00 11112478999999999998865432 124788888776
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.2e-17 Score=155.27 Aligned_cols=230 Identities=12% Similarity=0.053 Sum_probs=144.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||+++++.|++.|+ +|+++.|+... .++.....+-. .......++. |++ +
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~-----~~~~~~~~~~~-~~~~~~~~~~~D~~------~ 66 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGA---DIVLNGFGDAA-----EIEKVRAGLAA-QHGVKVLYDGADLS------K 66 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEECCSCHH-----HHHHHHHHHHH-HHTSCEEEECCCTT------S
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCC---EEEEEeCCcch-----HHHHHHHHHHh-ccCCcEEEEECCCC------C
Confidence 3579999999999999999999999975 68888886421 02221111100 0011223344 887 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+++..+++ ++|+||||||... ..+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 67 ~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 146 (260)
T 1x1t_A 67 GEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGL 146 (260)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhC
Confidence 666666654 6899999999753 23567888999999999999887531 246799999999765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..|.+.+.++ .++++++++||.
T Consensus 147 ~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~ 187 (260)
T 1x1t_A 147 VAS---------------------------------------ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGW 187 (260)
T ss_dssp SCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECC
T ss_pred cCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecC
Confidence 321 112679999999999987764 589999999999
Q ss_pred eeccCCCCC-CCCccCc-cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 312 VISTWKEPI-PGWIDNL-YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 312 i~g~~~~~~-~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.++..... +...... ......... +.........+..++|+|++++.++..... ...+.++++.
T Consensus 188 v~t~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~~~~~~p~dva~~~~~l~s~~~~-----~~tG~~~~vd 254 (260)
T 1x1t_A 188 VRTPLVEKQISALAEKNGVDQETAARE--------LLSEKQPSLQFVTPEQLGGTAVFLASDAAA-----QITGTTVSVD 254 (260)
T ss_dssp BCC--------------------------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred ccCchHHHhhhhhccccCCchHHHHHH--------HhhccCCCCCCcCHHHHHHHHHHHhChhhc-----CCCCCEEEEC
Confidence 987632211 0000000 000000000 000001123578999999999988865432 1247889887
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 255 gG 256 (260)
T 1x1t_A 255 GG 256 (260)
T ss_dssp TT
T ss_pred CC
Confidence 75
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-16 Score=151.27 Aligned_cols=222 Identities=14% Similarity=0.124 Sum_probs=145.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|+ +|+++.|+. ++++.... .++.. ...++. |++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~------~~~~~~~~----~~~~~~~~~~~~~~D~~----- 80 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGA---RVYTCSRNE------KELDECLE----IWREKGLNVEGSVCDLL----- 80 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHH----HHHhcCCceEEEECCCC-----
Confidence 4689999999999999999999999875 688888863 22222111 11111 222333 887
Q ss_pred CCHHHHHHHh--------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVT--------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~--------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~ 233 (545)
+.++++.++ .++|++||+||.... .+.++..+++|+.|+.++++++.. ..+..++|++||.
T Consensus 81 -~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~ 159 (273)
T 1ae1_A 81 -SRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSI 159 (273)
T ss_dssp -CHHHHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCH
Confidence 566666655 579999999997532 356788899999999999998842 1245799999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.++.... ....|+.||+..+.+.+.++ .++++++++
T Consensus 160 ~~~~~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~ 200 (273)
T 1ae1_A 160 AGFSALP---------------------------------------SVSLYSASKGAINQMTKSLACEWAKDNIRVNSVA 200 (273)
T ss_dssp GGTSCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhcCCCC---------------------------------------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEE
Confidence 8764311 12679999999999988765 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++...... ................. ....+..++|+|++++.++..... ...++++++
T Consensus 201 Pg~v~t~~~~~~~---~~~~~~~~~~~~~~~~~---------p~~r~~~p~dvA~~v~~l~s~~~~-----~~tG~~i~v 263 (273)
T 1ae1_A 201 PGVILTPLVETAI---KKNPHQKEEIDNFIVKT---------PMGRAGKPQEVSALIAFLCFPAAS-----YITGQIIWA 263 (273)
T ss_dssp ECSBC----------------CHHHHHHHHHHS---------TTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eCCCcCchhhhhh---hcccCcHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc-----CcCCCEEEE
Confidence 9999886422110 00000011111111100 012367899999999988764322 124788988
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 264 dGG 266 (273)
T 1ae1_A 264 DGG 266 (273)
T ss_dssp STT
T ss_pred CCC
Confidence 876
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-17 Score=158.73 Aligned_cols=233 Identities=12% Similarity=0.063 Sum_probs=148.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++......+-.........++. |++ +
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~~l~~~~~~~~~~~~~~D~~------~ 69 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGA---KVALVDWNLE------AGVQCKAALHEQFEPQKTLFIQCDVA------D 69 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHTTTSCGGGEEEEECCTT------S
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHHHHHhhcCCCceEEEecCCC------C
Confidence 4679999999999999999999999875 6888888632 1211111110000011223334 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHH----Hcc--CCceEEEEeccccccCCC
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK----QCK--NLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~~~~v~vSS~~v~~~~~ 240 (545)
.+++..+++ .+|+|||+||... .+.++..+++|+.|+..+.+.+. +.+ +..++|++||.+++....
T Consensus 70 ~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 148 (267)
T 2gdz_A 70 QQQLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVA 148 (267)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCC-hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCC
Confidence 666766655 4799999999764 34577888999997766665543 321 157999999998764311
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHh------c-cCCCEEEEccceee
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEE------A-QFFPVCIFRPSIVI 313 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~------~-~~l~~~i~Rp~~i~ 313 (545)
....|+.||+..|.+.+.+ . .++++++++||.|.
T Consensus 149 ---------------------------------------~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~ 189 (267)
T 2gdz_A 149 ---------------------------------------QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVN 189 (267)
T ss_dssp ---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBS
T ss_pred ---------------------------------------CCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCc
Confidence 1157999999999988752 1 68999999999987
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKD 393 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~ 393 (545)
++.... ...... ..... .....+ ..+.....+++++|+|++++.++..... .++++++.++
T Consensus 190 t~~~~~-------~~~~~~-~~~~~-~~~~~~-~~~~~~~~~~~~~dvA~~v~~l~s~~~~-------~G~~~~v~gg-- 250 (267)
T 2gdz_A 190 TAILES-------IEKEEN-MGQYI-EYKDHI-KDMIKYYGILDPPLIANGLITLIEDDAL-------NGAIMKITTS-- 250 (267)
T ss_dssp SHHHHG-------GGCHHH-HGGGG-GGHHHH-HHHHHHHCCBCHHHHHHHHHHHHHCTTC-------SSCEEEEETT--
T ss_pred chhhhc-------cccccc-cchhh-hHHHHH-HHHhccccCCCHHHHHHHHHHHhcCcCC-------CCcEEEecCC--
Confidence 652110 000000 00000 000000 0001123478999999999998876433 5889999987
Q ss_pred CcccHHHH
Q psy16252 394 NPLTWGEF 401 (545)
Q Consensus 394 ~~~t~~el 401 (545)
..+++.|+
T Consensus 251 ~~~~~~~~ 258 (267)
T 2gdz_A 251 KGIHFQDY 258 (267)
T ss_dssp TEEEECCC
T ss_pred CcccccCc
Confidence 66666654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-17 Score=158.03 Aligned_cols=222 Identities=10% Similarity=0.029 Sum_probs=147.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|++|||||+|+||++++++|++.|+ +|++..|.... ...+.+..... .. .....++. |++ +
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~~~~~~-~~~~~~~~~~~----~~-~~~~~~~~~Dv~------d 111 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREGA---DVAINYLPAEE-EDAQQVKALIE----EC-GRKAVLLPGDLS------D 111 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECCGGGH-HHHHHHHHHHH----HT-TCCEEECCCCTT------S
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCcch-hHHHHHHHHHH----Hc-CCcEEEEEecCC------C
Confidence 5789999999999999999999999976 67777675321 11111111111 00 11233344 887 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHcc-CCceEEEEecccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQCK-NLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~~~~~v~vSS~~v~~ 237 (545)
.++++.+++ ++|++||+||... ..+.++..+++|+.|+.++++++...- +-.++|++||..++.
T Consensus 112 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~ 191 (294)
T 3r3s_A 112 ESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ 191 (294)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc
Confidence 566665553 7899999999742 135678889999999999999997641 124899999998764
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
... ....|+.||+..+.+.+.++ .|+++.+++||.|
T Consensus 192 ~~~---------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v 232 (294)
T 3r3s_A 192 PSP---------------------------------------HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPI 232 (294)
T ss_dssp CCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSB
T ss_pred CCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcC
Confidence 321 11679999999999987765 5899999999999
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++..... +... ..... .........+..++|+|++++.++..... ...++++++.++
T Consensus 233 ~t~~~~~~-~~~~------~~~~~---------~~~~~p~~r~~~p~dvA~~v~~L~s~~~~-----~itG~~i~vdGG 290 (294)
T 3r3s_A 233 WTALQISG-GQTQ------DKIPQ---------FGQQTPMKRAGQPAELAPVYVYLASQESS-----YVTAEVHGVCGG 290 (294)
T ss_dssp CSHHHHTT-TSCG------GGSTT---------TTTTSTTSSCBCGGGGHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred cccccccc-CCCH------HHHHH---------HHhcCCCCCCcCHHHHHHHHHHHhCcccc-----CCCCCEEEECCC
Confidence 87631100 0000 00000 01112223467889999999988765432 235789999887
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=158.64 Aligned_cols=217 Identities=12% Similarity=0.084 Sum_probs=146.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|... .+.+.. .+... ...++. |++
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~----~~~~~~-------~~~~~~~~~~~~~~Dv~----- 89 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAGA---HVLAWGRTDG----VKEVAD-------EIADGGGSAEAVVADLA----- 89 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTH----HHHHHH-------HHHTTTCEEEEEECCTT-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCHHH----HHHHHH-------HHHhcCCcEEEEEecCC-----
Confidence 5689999999999999999999999975 6777776521 111111 11111 122333 887
Q ss_pred CCHHHHHHHhc------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 172 LSPDDKRLVTS------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 172 l~~~~~~~l~~------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+.+++..+.+ ++|+||||||.... .+.++..+++|+.|+.++++++... .+..++|++||..+
T Consensus 90 -d~~~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~ 168 (273)
T 3uf0_A 90 -DLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLS 168 (273)
T ss_dssp -CHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred -CHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHh
Confidence 5555555433 79999999997532 3567888999999999999987431 25579999999976
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... ....|+.||+..+.+.+.++ .++++.+++||
T Consensus 169 ~~~~~---------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG 209 (273)
T 3uf0_A 169 FQGGR---------------------------------------NVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPG 209 (273)
T ss_dssp TSCCS---------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred cCCCC---------------------------------------CChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Confidence 53211 12679999999999988765 68999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++..... ............+ .....+..++|||++++.++..... ...++++++.+
T Consensus 210 ~v~T~~~~~~-------~~~~~~~~~~~~~---------~p~~r~~~pedva~~v~~L~s~~a~-----~itG~~i~vdG 268 (273)
T 3uf0_A 210 YVVTANTAAL-------RADDERAAEITAR---------IPAGRWATPEDMVGPAVFLASDAAS-----YVHGQVLAVDG 268 (273)
T ss_dssp SBCSGGGHHH-------HTSHHHHHHHHHH---------STTSSCBCGGGGHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred CCcCCchhhc-------ccCHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCchhc-----CCcCCEEEECc
Confidence 9987632110 0001111111111 1123467899999999988765432 23578999887
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 269 G 269 (273)
T 3uf0_A 269 G 269 (273)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-16 Score=150.27 Aligned_cols=214 Identities=13% Similarity=0.120 Sum_probs=145.4
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
.+++|+|+||||+|+||+++++.|++.|. +|+++.|+. +++......+- ........++. |+...
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~------~~~~~~~~~~~-~~~~~~~~~~~~D~~~~---- 74 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGA---TVILLGRNE------EKLRQVASHIN-EETGRQPQWFILDLLTC---- 74 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHH-HHHSCCCEEEECCTTTC----
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHHHHH-hhcCCCceEEEEecccC----
Confidence 46789999999999999999999999875 688888863 22222211110 00111233344 77211
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEeccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAF 234 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~ 234 (545)
+.+++..+++ .+|++|||||... ..+.++..+++|+.|+.++++++.. ..+..++|++||..
T Consensus 75 ~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~ 154 (252)
T 3f1l_A 75 TSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSV 154 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChh
Confidence 5566665554 7899999999742 1355678899999999999998843 12557999999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPS 310 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~ 310 (545)
+.... .....|+.||+..+.+.+.++ +.+++..+.||
T Consensus 155 ~~~~~---------------------------------------~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG 195 (252)
T 3f1l_A 155 GRQGR---------------------------------------ANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPG 195 (252)
T ss_dssp GTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECC
T ss_pred hccCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 65321 112679999999999988775 44899999998
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|..+ +...... ......+..++|+|++++.++..... ...+.++++.+
T Consensus 196 ~v~t~-----------------~~~~~~~---------~~~~~~~~~p~dva~~~~~L~s~~~~-----~itG~~i~vdg 244 (252)
T 3f1l_A 196 GTRTA-----------------MRASAFP---------TEDPQKLKTPADIMPLYLWLMGDDSR-----RKTGMTFDAQP 244 (252)
T ss_dssp SBSSH-----------------HHHHHCT---------TCCGGGSBCTGGGHHHHHHHHSGGGT-----TCCSCEEESSC
T ss_pred cccCc-----------------hhhhhCC---------ccchhccCCHHHHHHHHHHHcCcccc-----CCCCCEEEeCC
Confidence 87543 1111111 11223467899999999988765432 23578999988
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 245 G 245 (252)
T 3f1l_A 245 G 245 (252)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=155.02 Aligned_cols=197 Identities=14% Similarity=0.125 Sum_probs=136.4
Q ss_pred hhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC
Q psy16252 92 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL 170 (545)
Q Consensus 92 ~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l 170 (545)
...+++|+|+||||+|+||++++++|++.|....+|+++.|+..... .+...... .....++. |++
T Consensus 16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~---~~~~l~~~------~~~~~~~~~Dl~---- 82 (267)
T 1sny_A 16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK---ELEDLAKN------HSNIHILEIDLR---- 82 (267)
T ss_dssp ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH---HHHHHHHH------CTTEEEEECCTT----
T ss_pred ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH---HHHHhhcc------CCceEEEEecCC----
Confidence 34467899999999999999999999998722247999999865432 22211110 11233344 887
Q ss_pred CCCHHHHHHHhc---------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHcc---------C-
Q psy16252 171 GLSPDDKRLVTS---------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQCK---------N- 223 (545)
Q Consensus 171 gl~~~~~~~l~~---------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~~---------~- 223 (545)
+.+++..+++ ++|+|||+||... ..+.++..+++|+.|+.++++++...- +
T Consensus 83 --~~~~v~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~ 160 (267)
T 1sny_A 83 --NFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQP 160 (267)
T ss_dssp --CGGGHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred --ChHHHHHHHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhccccccccc
Confidence 4455665554 7999999999754 135677889999999999999886530 1
Q ss_pred ----CceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc
Q psy16252 224 ----LKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA 299 (545)
Q Consensus 224 ----~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~ 299 (545)
..+||++||..++..... ......|+.||+..|.+++.++
T Consensus 161 ~~~~~~~iv~isS~~~~~~~~~------------------------------------~~~~~~Y~~sK~a~~~~~~~la 204 (267)
T 1sny_A 161 MGVGRAAIINMSSILGSIQGNT------------------------------------DGGMYAYRTSKSALNAATKSLS 204 (267)
T ss_dssp SSTTTCEEEEECCGGGCSTTCC------------------------------------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCceEEEEecccccccCCC------------------------------------CCCchHHHHHHHHHHHHHHHHH
Confidence 468999999977543210 0012579999999999998764
Q ss_pred -----cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 300 -----QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 300 -----~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.+++++++|||.|..+.... ..++..+++|+.++.++...
T Consensus 205 ~e~~~~gi~v~~v~Pg~v~t~~~~~---------------------------------~~~~~~~~~a~~~~~~~~~~ 249 (267)
T 1sny_A 205 VDLYPQRIMCVSLHPGWVKTDMGGS---------------------------------SAPLDVPTSTGQIVQTISKL 249 (267)
T ss_dssp HHHGGGTCEEEEECCCSBCSTTTCT---------------------------------TCSBCHHHHHHHHHHHHHHC
T ss_pred HHhhcCCcEEEEeCCcceecCCCCC---------------------------------CCCCCHHHHHHHHHHHHHhc
Confidence 58999999999985541100 12467899999999988754
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-17 Score=155.53 Aligned_cols=219 Identities=14% Similarity=0.091 Sum_probs=145.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+|+|+||||+|+||++++++|++.|+ +|+++.|.... ..+.+.+... .. ..+..++. |++ +.
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~---~v~~~~~~~~~--~~~~~~~~~~----~~-~~~~~~~~~Dl~------~~ 69 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGY---SVTVTYHSDTT--AMETMKETYK----DV-EERLQFVQADVT------KK 69 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCHH--HHHHHHHHTG----GG-GGGEEEEECCTT------SH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCC---EEEEEcCCChH--HHHHHHHHHH----hc-CCceEEEEecCC------CH
Confidence 368999999999999999999999975 67777776421 1112211111 00 11233444 888 56
Q ss_pred HHHHHHhc-------CccEEEEcccc--cc-------chHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEeccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAAT--LR-------FDEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAF 234 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~--~~-------~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~ 234 (545)
+++..+++ ++|+|||+||. .. ..+.++..+++|+.|+.++++++ ++. +..++|++||..
T Consensus 70 ~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~iss~~ 148 (264)
T 3i4f_A 70 EDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYGFQG 148 (264)
T ss_dssp HHHHHHHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEeech
Confidence 67766665 78999999993 11 13557888999999999999988 443 567999999985
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+..... ......|+.||+..+.+.+.++ .++++.+++|
T Consensus 149 ~~~~~~-------------------------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~P 191 (264)
T 3i4f_A 149 ADSAPG-------------------------------------WIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCP 191 (264)
T ss_dssp GGGCCC-------------------------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hcccCC-------------------------------------CCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEcc
Confidence 442211 0112689999999999887665 6899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++..... ........ . .......+..++|||++++.++..... ...++++++.
T Consensus 192 G~v~t~~~~~~---------~~~~~~~~-~--------~~~p~~r~~~~~dva~~v~~l~s~~~~-----~itG~~i~vd 248 (264)
T 3i4f_A 192 GDIIGEMKEAT---------IQEARQLK-E--------HNTPIGRSGTGEDIARTISFLCEDDSD-----MITGTIIEVT 248 (264)
T ss_dssp CCCCGGGGSCC---------HHHHHHC-----------------CCCCHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred CCccCccchhc---------cHHHHHHH-h--------hcCCCCCCcCHHHHHHHHHHHcCcccC-----CCCCcEEEEc
Confidence 99988743221 01111100 0 111123467899999999998875432 1248899998
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 249 GG 250 (264)
T 3i4f_A 249 GA 250 (264)
T ss_dssp CS
T ss_pred Cc
Confidence 87
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=153.59 Aligned_cols=226 Identities=11% Similarity=0.078 Sum_probs=149.2
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~l 170 (545)
.+++|+++||||+|+||++++++|++.|+ +|++..|+. ++++.... .+... ...++. |++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~------~~~~~~~~----~~~~~~~~~~~~~~Dv~---- 70 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA---DLVLAARTV------ERLEDVAK----QVTDTGRRALSVGTDIT---- 70 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHHTTCCEEEEECCTT----
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCH------HHHHHHHH----HHHhcCCcEEEEEcCCC----
Confidence 36789999999999999999999999975 688888863 22222211 12211 223344 888
Q ss_pred CCCHHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEecc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTA 233 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+-.++|++||.
T Consensus 71 --~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~ 148 (264)
T 3ucx_A 71 --DDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSM 148 (264)
T ss_dssp --CHHHHHHHHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCG
T ss_pred --CHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcc
Confidence 5666666654 7899999998742 12567888999999999999887542 011699999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+..... ....|+.||+..+.+.+.++ .++++.+++
T Consensus 149 ~~~~~~~---------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~ 189 (264)
T 3ucx_A 149 VVRHSQA---------------------------------------KYGAYKMAKSALLAMSQTLATELGEKGIRVNSVL 189 (264)
T ss_dssp GGGCCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhccCCC---------------------------------------ccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEe
Confidence 7653211 11579999999999888765 689999999
Q ss_pred cceeeccCCCCCCCCcc-C-ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 309 PSIVISTWKEPIPGWID-N-LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~-~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
||.|.++.......... . ......+..... .......+..++|||++++.++..... ...++++
T Consensus 190 PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~p~~r~~~p~dvA~~v~~L~s~~~~-----~itG~~i 255 (264)
T 3ucx_A 190 PGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAA---------AGSDLKRLPTEDEVASAILFMASDLAS-----GITGQAL 255 (264)
T ss_dssp ESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHH---------TTSSSSSCCBHHHHHHHHHHHHSGGGT-----TCCSCEE
T ss_pred cCccccccHHHHHHhhhhhcCCCHHHHHHHHh---------ccCCcccCCCHHHHHHHHHHHcCcccc-----CCCCCEE
Confidence 99997752110000000 0 000011111111 122234578999999999988765432 2357899
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
++.++
T Consensus 256 ~vdGG 260 (264)
T 3ucx_A 256 DVNCG 260 (264)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 98876
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-16 Score=153.00 Aligned_cols=221 Identities=12% Similarity=0.083 Sum_probs=148.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||+++++.|++.|. +|+++.|+. +++...... + .....++. |++ +
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~------~~~~~~~~~----~-~~~~~~~~~Dv~------d 84 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNGA---YVVVADVNE------DAAVRVANE----I-GSKAFGVRVDVS------S 84 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSH------HHHHHHHHH----H-CTTEEEEECCTT------C
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHHH----h-CCceEEEEecCC------C
Confidence 4689999999999999999999999975 688888863 222221111 1 11222333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 85 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 164 (277)
T 4dqx_A 85 AKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTAT 164 (277)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhC
Confidence 666666665 7899999999642 23567888999999999999888542 244699999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..+.+.+.++ .++++.+++||.
T Consensus 165 ~~~~---------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~ 205 (277)
T 4dqx_A 165 SAIA---------------------------------------DRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGT 205 (277)
T ss_dssp SCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred cCCC---------------------------------------CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCc
Confidence 3211 11679999999999988765 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.++..... +. ............. .......+..++|+|++++.++..... ...++++++.++
T Consensus 206 v~T~~~~~~--~~-~~~~~~~~~~~~~---------~~~~~~r~~~pedvA~~v~~L~s~~~~-----~itG~~i~vdGG 268 (277)
T 4dqx_A 206 IDSPYFTKI--FA-EAKDPAKLRSDFN---------ARAVMDRMGTAEEIAEAMLFLASDRSR-----FATGSILTVDGG 268 (277)
T ss_dssp BCCHHHHHH--HH-TCSCHHHHHHHHH---------TTSTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESSS
T ss_pred CcCchhhhh--cc-cccchhHHHHHHH---------hcCcccCCcCHHHHHHHHHHHhCCccC-----CCcCCEEEECCc
Confidence 876520000 00 0000011111111 112233467899999999988765432 124889999887
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-16 Score=154.59 Aligned_cols=233 Identities=12% Similarity=0.078 Sum_probs=150.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC------CHHHHHHhhHHHHHHhhhhc--CCCccc-CC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ------SPQQRIDKMLDTVAISLKFT--CSTSKE-SA 165 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~------~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl 165 (545)
+++|+|+||||+|+||+++++.|++.|. +|+++.|..... ...+++..... .+... ...++. |+
T Consensus 44 l~gk~~lVTGas~GIG~aia~~la~~G~---~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Dv 116 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRTHAVRLAQDGA---DIVAIDLCRQQPNLDYAQGSPEELKETVR----LVEEQGRRIIARQADV 116 (317)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECCCCCTTCCSCCCCHHHHHHHHH----HHHHTTCCEEEEECCT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---eEEEEecccccccccccccCHHHHHHHHH----HHHhcCCeEEEEECCC
Confidence 5689999999999999999999999976 677777763221 11233333222 12222 223333 88
Q ss_pred CCCCCCCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc----cCCceE
Q psy16252 166 QAPDLGLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC----KNLKMF 227 (545)
Q Consensus 166 ~~~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~ 227 (545)
+ +.++++.+++ .+|++|||||... ..+.++..+++|+.|+.++++++... +.-.++
T Consensus 117 ~------d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~I 190 (317)
T 3oec_A 117 R------DLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSV 190 (317)
T ss_dssp T------CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEE
T ss_pred C------CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 8 5667766654 7899999999753 23567888999999999999987542 224679
Q ss_pred EEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCC
Q psy16252 228 TYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFF 302 (545)
Q Consensus 228 v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l 302 (545)
|++||..+..... ....|+.||+..+.+.+.++ .|+
T Consensus 191 v~isS~~~~~~~~---------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI 231 (317)
T 3oec_A 191 IFVSSTVGLRGAP---------------------------------------GQSHYAASKHGVQGLMLSLANEVGRHNI 231 (317)
T ss_dssp EEECCGGGSSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEECcHHhcCCCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHhhcCe
Confidence 9999987653211 11679999999999988765 589
Q ss_pred CEEEEccceeeccCCCCCC---CCccCccch-HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCC
Q psy16252 303 PVCIFRPSIVISTWKEPIP---GWIDNLYGP-TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHK 378 (545)
Q Consensus 303 ~~~i~Rp~~i~g~~~~~~~---g~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~ 378 (545)
++.+++||.|.++...... .+......+ ..-...... ........++.++|||++++.++.....
T Consensus 232 ~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~p~~~~~pedvA~av~fL~s~~a~---- 300 (317)
T 3oec_A 232 RVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFS-------QLTLLPIPWVEPEDVSNAVAWLASDEAR---- 300 (317)
T ss_dssp EEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHHHHHT-------TTCSSSSSSBCHHHHHHHHHHHTSGGGT----
T ss_pred EEEEEecCcccCccccchhhhhhhhhhccccchhHHHHHHh-------hhccCCCCCCCHHHHHHHHHHHcCCccc----
Confidence 9999999999775211000 000000000 000000000 0111125688999999999988765432
Q ss_pred CCCCCCEEEeecC
Q psy16252 379 DPSCLPIYNYVNS 391 (545)
Q Consensus 379 ~~~~~~vy~i~~~ 391 (545)
...++++++.++
T Consensus 301 -~itG~~i~vdGG 312 (317)
T 3oec_A 301 -YIHGAAIPVDGG 312 (317)
T ss_dssp -TCCSCEEEESTT
T ss_pred -CCCCCEEEECcc
Confidence 235789998876
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=150.36 Aligned_cols=201 Identities=13% Similarity=0.018 Sum_probs=143.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
+++|+++||||+|+||++++++|++.|+ +|++..|.... |++ +.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~~~---------------------------D~~------~~ 47 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHT---IVHVASRQTGL---------------------------DIS------DE 47 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTE---EEEEESGGGTC---------------------------CTT------CH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEecCCccc---------------------------CCC------CH
Confidence 4579999999999999999999999865 68888887531 777 55
Q ss_pred HHHHHHhc---CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCCcc
Q psy16252 175 DDKRLVTS---KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRKNI 242 (545)
Q Consensus 175 ~~~~~l~~---~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i 242 (545)
++++++++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+-.++|++||..+.....
T Consensus 48 ~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-- 125 (223)
T 3uce_A 48 KSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVA-- 125 (223)
T ss_dssp HHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCT--
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCC--
Confidence 66666654 7899999999751 23567788999999999999998763 1124899999987654311
Q ss_pred cccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeeccCCCC
Q psy16252 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVISTWKEP 319 (545)
Q Consensus 243 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~~~~~ 319 (545)
....|+.||+..|.+.+.++ ..+++..++||.|.++....
T Consensus 126 -------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~ 168 (223)
T 3uce_A 126 -------------------------------------NTYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKG 168 (223)
T ss_dssp -------------------------------------TCHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTT
T ss_pred -------------------------------------CchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhh
Confidence 12679999999999998776 34999999999998764322
Q ss_pred CCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 320 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.. . .....+......+ .....+..++|+|++++.++..... .++++++.++
T Consensus 169 ~~---~--~~~~~~~~~~~~~---------~~~~~~~~~~dvA~~~~~l~~~~~~-------tG~~i~vdgG 219 (223)
T 3uce_A 169 MN---A--DDRDAMYQRTQSH---------LPVGKVGEASDIAMAYLFAIQNSYM-------TGTVIDVDGG 219 (223)
T ss_dssp SC---H--HHHHHHHHHHHHH---------STTCSCBCHHHHHHHHHHHHHCTTC-------CSCEEEESTT
T ss_pred cc---h--hhHHHHHHHHhhc---------CCCCCccCHHHHHHHHHHHccCCCC-------CCcEEEecCC
Confidence 11 0 0001111111111 1123467899999999988865433 5889998876
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-16 Score=150.21 Aligned_cols=215 Identities=10% Similarity=0.043 Sum_probs=146.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||+++++.|++.|. +|+++.|... ++++.... .++.. ...++. |++
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G~---~V~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~D~~----- 88 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAGA---KVAVNYASSA-----GAADEVVA----AIAAAGGEAFAVKADVS----- 88 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH-----HHHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCCh-----HHHHHHHH----HHHhcCCcEEEEECCCC-----
Confidence 5689999999999999999999999975 6777777432 12222111 11111 223334 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.++++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..
T Consensus 89 -d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~ 167 (269)
T 4dmm_A 89 -QESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVV 167 (269)
T ss_dssp -SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHH
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchh
Confidence 5666666655 78999999997532 3567888999999999999987431 2456999999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..+.+.+.++ .++++.+++|
T Consensus 168 ~~~~~---------------------------------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~P 208 (269)
T 4dmm_A 168 GEMGN---------------------------------------PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAP 208 (269)
T ss_dssp HHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred hcCCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEE
Confidence 64321 112679999998888877654 6899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++.... ......... .....+..++|+|++++.++..+.. ....++++++.
T Consensus 209 G~v~T~~~~~------------~~~~~~~~~---------~p~~r~~~~~dvA~~v~~l~s~~~~----~~itG~~i~vd 263 (269)
T 4dmm_A 209 GFIATDMTSE------------LAAEKLLEV---------IPLGRYGEAAEVAGVVRFLAADPAA----AYITGQVINID 263 (269)
T ss_dssp CCBTTSCSCH------------HHHHHHGGG---------CTTSSCBCHHHHHHHHHHHHHCGGG----GGCCSCEEEES
T ss_pred CCCcCccccc------------ccHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCCccc----CCCcCCEEEEC
Confidence 9997752210 000111111 1123467899999999998876322 01247899998
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 264 GG 265 (269)
T 4dmm_A 264 GG 265 (269)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.8e-17 Score=157.11 Aligned_cols=241 Identities=11% Similarity=0.027 Sum_probs=152.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCC------HHHHHHhhHHHHHHhhhhc--CCCccc-CC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS------PQQRIDKMLDTVAISLKFT--CSTSKE-SA 165 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~------~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl 165 (545)
+++|+||||||+|+||++++++|++.|+ +|+++.|...... ..++++..... +... ...++. |+
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~ 80 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGA---DIILFDICHDIETNEYPLATSRDLEEAGLE----VEKTGRKAYTAEVDV 80 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSCCTTSCSCCCCHHHHHHHHHH----HHHTTSCEEEEECCT
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC---eEEEEcccccccccccchhhhHHHHHHHHH----HHhcCCceEEEEccC
Confidence 5689999999999999999999999975 6888888643221 12233322111 1111 223334 88
Q ss_pred CCCCCCCCHHHHHHHhc-------CccEEEEccccccc-----hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 166 QAPDLGLSPDDKRLVTS-------KVNLVFHCAATLRF-----DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 166 ~~~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~~-----~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
+ +.+++.++++ ++|++|||||.... .+.++..+++|+.|+.++++++... .+-.++|++||
T Consensus 81 ~------~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 154 (287)
T 3pxx_A 81 R------DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS 154 (287)
T ss_dssp T------CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred C------CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence 8 5666666655 78999999997542 3667889999999999999998763 23358999999
Q ss_pred cccccCCC--cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 233 AFSNSYRK--NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 233 ~~v~~~~~--~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
..+..... +..|.. .. .....|+.||+..+.+.+.++ .++++.
T Consensus 155 ~~~~~~~~~~~~~~~~---------------------~~---------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn 204 (287)
T 3pxx_A 155 VAGLIAAAQPPGAGGP---------------------QG---------PGGAGYSYAKQLVDSYTLQLAAQLAPQSIRAN 204 (287)
T ss_dssp HHHHHHHHCCC--------------------------CH---------HHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred chhccccccccccccc---------------------CC---------CccchHHHHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 87653211 000000 00 001579999999999988765 589999
Q ss_pred EEccceeeccCCCCCCC---CccCccc--hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCC
Q psy16252 306 IFRPSIVISTWKEPIPG---WIDNLYG--PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDP 380 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g---~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~ 380 (545)
.++||.|.++.....+. +...... ........ .........+..++|||++++.++..... .
T Consensus 205 ~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~p~dva~~v~fL~s~~a~-----~ 271 (287)
T 3pxx_A 205 VIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAF--------PAMQAMPTPYVEASDISNAVCFLASDESR-----Y 271 (287)
T ss_dssp EEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHG--------GGGCSSSCSCBCHHHHHHHHHHHHSGGGT-----T
T ss_pred EEecCccccccccccchhhhhccccccchhHHHHhhh--------hhhcccCCCCCCHHHHHhhHheecchhhc-----C
Confidence 99999998764321000 0000000 00000000 01111125688999999999988765432 2
Q ss_pred CCCCEEEeecC
Q psy16252 381 SCLPIYNYVNS 391 (545)
Q Consensus 381 ~~~~vy~i~~~ 391 (545)
..+.++++.++
T Consensus 272 itG~~i~vdGG 282 (287)
T 3pxx_A 272 VTGLQFKVDAG 282 (287)
T ss_dssp CCSCEEEESTT
T ss_pred CCCceEeECch
Confidence 35789999887
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-16 Score=150.50 Aligned_cols=216 Identities=12% Similarity=0.059 Sum_probs=141.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. +++...+.. . .....++. |++ +
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~-----~~~~~~~~~----~-~~~~~~~~~Dv~------~ 65 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGA---DIAIADLVPA-----PEAEAAIRN----L-GRRVLTVKCDVS------Q 65 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCC-----HHHHHHHHH----T-TCCEEEEECCTT------C
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCCch-----hHHHHHHHh----c-CCcEEEEEeecC------C
Confidence 4679999999999999999999999875 6888888752 111111110 0 11223333 887 5
Q ss_pred HHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEecccc
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v 235 (545)
.++++.++ .++|+|||+||.... .+.++..+++|+.|+.++++++ ++. +..++|++||..+
T Consensus 66 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~ 144 (249)
T 2ew8_A 66 PGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN-GWGRIINLTSTTY 144 (249)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhh
Confidence 56666654 378999999997532 3557788999999988888874 333 5689999999977
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
+.... ....|+.||+..|.+.+.++ .++++++++||
T Consensus 145 ~~~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg 185 (249)
T 2ew8_A 145 WLKIE---------------------------------------AYTHYISTKAANIGFTRALASDLGKDGITVNAIAPS 185 (249)
T ss_dssp GSCCS---------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ccCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 54311 12679999999999988765 58999999999
Q ss_pred eeeccCCC-CCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 311 IVISTWKE-PIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 311 ~i~g~~~~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
.|.++... ... ... ... ..... .....+.+++|+|++++.++..... ...++++++.
T Consensus 186 ~v~t~~~~~~~~---~~~---~~~----~~~~~-------~~~~~~~~p~dva~~~~~l~s~~~~-----~~tG~~~~vd 243 (249)
T 2ew8_A 186 LVRTATTEASAL---SAM---FDV----LPNML-------QAIPRLQVPLDLTGAAAFLASDDAS-----FITGQTLAVD 243 (249)
T ss_dssp CC----------------------------CTT-------SSSCSCCCTHHHHHHHHHHTSGGGT-----TCCSCEEEES
T ss_pred cCcCccchhccc---cch---hhH----HHHhh-------CccCCCCCHHHHHHHHHHHcCcccC-----CCCCcEEEEC
Confidence 99876321 100 000 000 00000 1112478999999999998865322 1247888887
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 244 GG 245 (249)
T 2ew8_A 244 GG 245 (249)
T ss_dssp SS
T ss_pred CC
Confidence 75
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=154.27 Aligned_cols=225 Identities=12% Similarity=0.131 Sum_probs=147.6
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
.-+++|+|+||||+|+||++++++|++.|....+|++..|+. ++++.....+-.........++. |++
T Consensus 29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~------~~~~~~~~~l~~~~~~~~~~~~~~Dv~----- 97 (287)
T 3rku_A 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRL------EKLEELKKTIDQEFPNAKVHVAQLDIT----- 97 (287)
T ss_dssp HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCH------HHHHHHHHHHHHHCTTCEEEEEECCTT-----
T ss_pred hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCH------HHHHHHHHHHHhhCCCCeEEEEECCCC-----
Confidence 346789999999999999999999999876545788888863 22222211111100011223344 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++.. ..+..++|++||.
T Consensus 98 -d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~ 176 (287)
T 3rku_A 98 -QAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSI 176 (287)
T ss_dssp -CGGGHHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCh
Confidence 5566666664 6899999999653 2356788999999999999998842 1255799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..+.+.+.++ .+++++.++
T Consensus 177 ~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~ 217 (287)
T 3rku_A 177 AGRDAY---------------------------------------PTGSIYCASKFAVGAFTDSLRKELINTKIRVILIA 217 (287)
T ss_dssp GGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEE
T ss_pred hhcCCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEe
Confidence 765321 112679999999999888765 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|..+.... ................ ..+.++|||++++.++..... ...++++.+
T Consensus 218 PG~v~T~~~~~------~~~~~~~~~~~~~~~~------------~p~~pedvA~~v~~l~s~~~~-----~i~g~~i~v 274 (287)
T 3rku_A 218 PGLVETEFSLV------RYRGNEEQAKNVYKDT------------TPLMADDVADLIVYATSRKQN-----TVIADTLIF 274 (287)
T ss_dssp ESCEESSHHHH------HTTTCHHHHHHHHTTS------------CCEEHHHHHHHHHHHHTSCTT-----EEEEEEEEE
T ss_pred CCcCcCccccc------cccCcHHHHHHhhccc------------CCCCHHHHHHHHHHHhCCCCC-----eEecceEEe
Confidence 99997652100 0000011111111111 123789999999998876542 112567777
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 275 ~~g 277 (287)
T 3rku_A 275 PTN 277 (287)
T ss_dssp ETT
T ss_pred eCC
Confidence 665
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=152.95 Aligned_cols=220 Identities=12% Similarity=0.055 Sum_probs=146.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++.... .+ ....++. |++ +
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~-----~~--~~~~~~~~D~~------~ 61 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGA---KVIATDINES------KLQELE-----KY--PGIQTRVLDVT------K 61 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHGGGG-----GS--TTEEEEECCTT------C
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHH-----hc--cCceEEEeeCC------C
Confidence 4579999999999999999999999875 6888888632 221110 01 0222333 887 5
Q ss_pred HHHHHHHh---cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCC
Q psy16252 174 PDDKRLVT---SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 174 ~~~~~~l~---~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~ 240 (545)
.++++++. .++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..+.....
T Consensus 62 ~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 141 (246)
T 2ag5_A 62 KKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGV 141 (246)
T ss_dssp HHHHHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCC
T ss_pred HHHHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCC
Confidence 55665553 478999999997532 3567788999999999999987531 2567999999987653210
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
.....|+.||+..|.+.+.++ .+++++++|||.|+++
T Consensus 142 --------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 183 (246)
T 2ag5_A 142 --------------------------------------VNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTP 183 (246)
T ss_dssp --------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECH
T ss_pred --------------------------------------CCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCc
Confidence 011579999999999988765 4899999999999886
Q ss_pred CCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
..... ................. .....++.++|+|++++.++..... ...++++++.++
T Consensus 184 ~~~~~---~~~~~~~~~~~~~~~~~---------~~~~~~~~~~dvA~~v~~l~s~~~~-----~~tG~~i~vdgG 242 (246)
T 2ag5_A 184 SLQER---IQARGNPEEARNDFLKR---------QKTGRFATAEEIAMLCVYLASDESA-----YVTGNPVIIDGG 242 (246)
T ss_dssp HHHHH---HHHSSSHHHHHHHHHHT---------CTTSSCEEHHHHHHHHHHHHSGGGT-----TCCSCEEEECTT
T ss_pred chhhh---hhcccCcHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCcccc-----CCCCCEEEECCC
Confidence 31100 00000001111111111 0112478999999999998765432 124788888775
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-16 Score=148.14 Aligned_cols=219 Identities=9% Similarity=0.036 Sum_probs=146.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|+.. +++... ..+... ...++. |++
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~------~~~~~~----~~~~~~~~~~~~~~~Dv~----- 65 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGA---RVVITGRTKE------KLEEAK----LEIEQFPGQILTVQMDVR----- 65 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHH----HHHCCSTTCEEEEECCTT-----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHH----HHHHhcCCcEEEEEccCC-----
Confidence 5689999999999999999999999975 6888888632 222211 112111 222333 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++.. .++..++|++||.
T Consensus 66 -~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 144 (257)
T 3imf_A 66 -NTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVAT 144 (257)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECch
Confidence 5666666654 7899999999642 1356788899999999999998743 2245789999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc------cCCCEEEE
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA------QFFPVCIF 307 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~------~~l~~~i~ 307 (545)
.+.... .....|+.||+..+.+.+.++ .++++.++
T Consensus 145 ~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v 185 (257)
T 3imf_A 145 YAWDAG---------------------------------------PGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAI 185 (257)
T ss_dssp GGGSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred hhccCC---------------------------------------CCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEE
Confidence 765321 112679999999988887654 38999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
+||.|.++..... .|... .+...... ......+..++|+|++++.++..... ...+++++
T Consensus 186 ~PG~v~t~~~~~~-~~~~~-----~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~-----~itG~~i~ 245 (257)
T 3imf_A 186 APGPIERTGGADK-LWISE-----EMAKRTIQ---------SVPLGRLGTPEEIAGLAYYLCSDEAA-----YINGTCMT 245 (257)
T ss_dssp EECCBSSCCCC-------------CCSHHHHT---------TSTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred EECCCcCCcchhh-cccCH-----HHHHHHHh---------cCCCCCCcCHHHHHHHHHHHcCchhc-----CccCCEEE
Confidence 9999987632210 00000 00011111 11123478899999999988865432 22478999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 246 vdGG 249 (257)
T 3imf_A 246 MDGG 249 (257)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8887
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=154.13 Aligned_cols=222 Identities=12% Similarity=0.048 Sum_probs=139.1
Q ss_pred cCcEEEEeccccccchHHHHHHHh-hCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLR-SFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~-~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
++|+|+||||+|+||++++++|++ .|+ +|+++.|+.. ++..... .+.. ....++. |++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~Dl~----- 64 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG---DVVLTARDVT------RGQAAVQ----QLQAEGLSPRFHQLDID----- 64 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS---EEEEEESSHH------HHHHHHH----HHHHTTCCCEEEECCTT-----
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC---eEEEEeCChH------HHHHHHH----HHHhcCCeeEEEECCCC-----
Confidence 479999999999999999999999 765 6888888632 2222111 1111 1233444 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHcc-CCceEEEEeccccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQCK-NLKMFTYVSTAFSN 236 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~~-~~~~~v~vSS~~v~ 236 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- ...+||++||..++
T Consensus 65 -~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~ 143 (276)
T 1wma_A 65 -DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSV 143 (276)
T ss_dssp -CHHHHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhh
Confidence 5667776665 79999999997532 35678889999999999999998741 12489999998765
Q ss_pred cCC-C--c-ccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCC-chHHHHHHHHHHHHHHhc----c-----CC
Q psy16252 237 SYR-K--N-IEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENM-NTYTLTKAAAEQLLCEEA----Q-----FF 302 (545)
Q Consensus 237 ~~~-~--~-i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~aE~~~~~~~----~-----~l 302 (545)
... . + ..+.....+...+++...... ..+....... ....+| ..|+.||+..|.+++.++ . ++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i 220 (276)
T 1wma_A 144 RALKSCSPELQQKFRSETITEEELVGLMNK-FVEDTKKGVH--QKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKI 220 (276)
T ss_dssp HHHHTSCHHHHHHHHCSSCCHHHHHHHHHH-HHHHHHTTCT--TTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred cccccCChhHHhhccccccchhhhhhhhhh-hhhhhccccc--ccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCce
Confidence 320 0 0 000111111111111100000 0000000000 001122 789999999999887764 2 89
Q ss_pred CEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 303 PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 303 ~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
++++++||.|.++... . ..+.+++|+|++++.++..+
T Consensus 221 ~v~~v~PG~v~t~~~~---------------------~------------~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 221 LLNACCPGWVRTDMAG---------------------P------------KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp EEEEEECCSBCSTTTC---------------------T------------TCSBCHHHHTHHHHHHHSCC
T ss_pred EEEEecCCccccCcCC---------------------c------------cccCChhHhhhhHhhhhcCc
Confidence 9999999998664210 0 13689999999999988754
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=149.89 Aligned_cols=217 Identities=14% Similarity=0.158 Sum_probs=144.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||||+||++++++|++.|+ +|+++.|... ++++.... .++. ....++. |++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~~-----~~~~~~~~----~~~~~~~~~~~~~~D~~----- 64 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGA---NVVVNYAGNE-----QKANEVVD----EIKKLGSDAIAVRADVA----- 64 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH-----HHHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCH-----HHHHHHHH----HHHhcCCcEEEEEcCCC-----
Confidence 3579999999999999999999999875 6888888321 22222111 1111 1223334 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.++++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||..
T Consensus 65 -~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~ 143 (246)
T 2uvd_A 65 -NAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVV 143 (246)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHH
Confidence 5667766665 79999999997532 3567888999999988777765431 2568999999986
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..+.+.+.++ .++++++++|
T Consensus 144 ~~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~P 184 (246)
T 2uvd_A 144 GVTGN---------------------------------------PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAP 184 (246)
T ss_dssp HHHCC---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hcCCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEe
Confidence 54221 011579999998888876654 6899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++.....+ . .......... ....+++++|+|++++.++..... ...++++++.
T Consensus 185 g~v~t~~~~~~~---~------~~~~~~~~~~---------p~~~~~~~~dvA~~~~~l~s~~~~-----~~tG~~~~vd 241 (246)
T 2uvd_A 185 GFIATDMTDVLD---E------NIKAEMLKLI---------PAAQFGEAQDIANAVTFFASDQSK-----YITGQTLNVD 241 (246)
T ss_dssp CSBGGGCSSCCC---T------THHHHHHHTC---------TTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred ccccCcchhhcC---H------HHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhc-----CCCCCEEEEC
Confidence 999776422110 0 0111111110 112478999999999988765332 1247888887
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 242 gG 243 (246)
T 2uvd_A 242 GG 243 (246)
T ss_dssp TT
T ss_pred cC
Confidence 75
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=153.51 Aligned_cols=217 Identities=11% Similarity=0.055 Sum_probs=147.7
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~l 170 (545)
.+++|+|+||||+|+||+++++.|++.|. +|+++.|... +++.... .+... ....+. |++
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~Dv~---- 87 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGA---MVIGTATTEA------GAEGIGA----AFKQAGLEGRGAVLNVN---- 87 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSHH------HHHHHHH----HHHHHTCCCEEEECCTT----
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCcEEEEEEeCC----
Confidence 36789999999999999999999999975 6888888632 2222111 11111 223333 887
Q ss_pred CCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.++++.+++ .+|++|||||... ..+.++..+++|+.|+.++++++... .+-.++|++||.
T Consensus 88 --d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~ 165 (270)
T 3ftp_A 88 --DATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSV 165 (270)
T ss_dssp --CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred --CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECch
Confidence 5666666655 7899999999753 23567888999999999999987531 244689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..+.+.+.++ .++++.+++
T Consensus 166 ~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~ 206 (270)
T 3ftp_A 166 VGSAGN---------------------------------------PGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVA 206 (270)
T ss_dssp HHHHCC---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhCCCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEE
Confidence 764321 111679999998888887664 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++.... .. ......... ......+..++|+|++++.++..... ...++++++
T Consensus 207 PG~v~T~~~~~-------~~--~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~-----~itG~~i~v 263 (270)
T 3ftp_A 207 PGFIDTDMTKG-------LP--QEQQTALKT---------QIPLGRLGSPEDIAHAVAFLASPQAG-----YITGTTLHV 263 (270)
T ss_dssp ECSBCSHHHHH-------SC--HHHHHHHHT---------TCTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eCCCcCcchhh-------cC--HHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHhCCCcC-----CccCcEEEE
Confidence 99987652111 00 111111111 11223578899999999988754332 225789999
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 264 dGG 266 (270)
T 3ftp_A 264 NGG 266 (270)
T ss_dssp STT
T ss_pred CCC
Confidence 876
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-16 Score=154.33 Aligned_cols=223 Identities=12% Similarity=0.103 Sum_probs=146.4
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhh---hhcCCCccc-CCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISL---KFTCSTSKE-SAQAPD 169 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~---~~~~~~~~~-Dl~~~~ 169 (545)
.+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++......+-... ......++. |++
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~D~~--- 82 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGS---NVVIASRKLE------RLKSAADELQANLPPTKQARVIPIQCNIR--- 82 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHHHTSCTTCCCCEEEEECCTT---
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHhhccccCCccEEEEecCCC---
Confidence 36789999999999999999999999875 6888888632 2222111110000 011223344 887
Q ss_pred CCCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEec
Q psy16252 170 LGLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVST 232 (545)
Q Consensus 170 lgl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS 232 (545)
+.+++..+++ ++|+||||||... ..+.++..+++|+.|+.++++++... .+..++|++||
T Consensus 83 ---~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS 159 (303)
T 1yxm_A 83 ---NEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIV 159 (303)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECC
T ss_pred ---CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 5667776665 5899999999542 13456788999999999999987652 13478999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
....+. .....|+.||...+.+.+.++ .+++++++
T Consensus 160 ~~~~~~----------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v 199 (303)
T 1yxm_A 160 PTKAGF----------------------------------------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCV 199 (303)
T ss_dssp CCTTCC----------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEE
T ss_pred ecccCC----------------------------------------CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEE
Confidence 872211 111579999999988887664 48999999
Q ss_pred ccceeeccCCC-CCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 308 RPSIVISTWKE-PIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 308 Rp~~i~g~~~~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
|||.|+++... ....+. .... ..... ......+++++|+|++++.++..... ...++++
T Consensus 200 ~Pg~v~t~~~~~~~~~~~------~~~~----~~~~~-----~~p~~~~~~~~dvA~~i~~l~~~~~~-----~~~G~~~ 259 (303)
T 1yxm_A 200 APGVIYSQTAVENYGSWG------QSFF----EGSFQ-----KIPAKRIGVPEEVSSVVCFLLSPAAS-----FITGQSV 259 (303)
T ss_dssp EECSBCCTGGGTTSGGGG------GGGG----TTGGG-----GSTTSSCBCTHHHHHHHHHHHSGGGT-----TCCSCEE
T ss_pred ecCCcccchhhhhccccc------hHHH----HHHHh-----cCcccCCCCHHHHHHHHHHHhCcccc-----cCCCcEE
Confidence 99999987311 000000 0000 01000 00112478999999999988865332 1247899
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
++.++
T Consensus 260 ~v~gG 264 (303)
T 1yxm_A 260 DVDGG 264 (303)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99887
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=157.03 Aligned_cols=224 Identities=14% Similarity=0.108 Sum_probs=145.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++..... .+ .....++. |++ +
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G~---~V~~~~r~~~------~~~~~~~----~~-~~~~~~~~~Dl~------d 73 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRGA---TVIMAVRDTR------KGEAAAR----TM-AGQVEVRELDLQ------D 73 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHT----TS-SSEEEEEECCTT------C
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHH----Hh-cCCeeEEEcCCC------C
Confidence 5689999999999999999999999875 7888888732 2221111 11 11223334 888 6
Q ss_pred HHHHHHHhc---CccEEEEccccccc-----hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCccccc
Q psy16252 174 PDDKRLVTS---KVNLVFHCAATLRF-----DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEI 245 (545)
Q Consensus 174 ~~~~~~l~~---~vd~Vih~Aa~~~~-----~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~ 245 (545)
.+++.++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... ..+++|++||..++.......+.
T Consensus 74 ~~~v~~~~~~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-~~~riv~isS~~~~~~~~~~~~~ 152 (291)
T 3rd5_A 74 LSSVRRFADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPR-LTDRVVTVSSMAHWPGRINLEDL 152 (291)
T ss_dssp HHHHHHHHHTCCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGG-EEEEEEEECCGGGTTCCCCSSCT
T ss_pred HHHHHHHHHhcCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhheeEeechhhccCCCCcccc
Confidence 778888776 67999999997531 3456778999999999999999886 55799999999876432111100
Q ss_pred ccC-CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cC--CCEEEEccceeeccCC
Q psy16252 246 IYK-AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QF--FPVCIFRPSIVISTWK 317 (545)
Q Consensus 246 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~--l~~~i~Rp~~i~g~~~ 317 (545)
... .+. .....|+.||+..+.+.+.++ .+ +++..++||.|..+..
T Consensus 153 ~~~~~~~---------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~ 205 (291)
T 3rd5_A 153 NWRSRRY---------------------------SPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQ 205 (291)
T ss_dssp TCSSSCC---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-
T ss_pred cccccCC---------------------------CCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccc
Confidence 000 000 011579999999999987765 35 9999999999966532
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
...+ ......... .-...-..+++++|++++.++..+.. .++.+++.++
T Consensus 206 ~~~~---------~~~~~~~~~---------~~~~~~~~~~~~~A~~~~~l~~~~~~-------~G~~~~vdgG 254 (291)
T 3rd5_A 206 GASG---------RKLGDALMS---------AATRVVATDADFGARQTLYAASQDLP-------GDSFVGPRFG 254 (291)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHHSCCC-------TTCEEEETTS
T ss_pred cccc---------hHHHHHHHH---------HHHHHHhCCHHHHHHHHHHHHcCCCC-------CCceeCCccc
Confidence 2110 000000000 00111234689999999998877543 4677776543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=150.64 Aligned_cols=220 Identities=12% Similarity=0.118 Sum_probs=148.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||++++++|++.|. +|++..|+. ++++..... + .....++. |++ +
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~------~~~~~~~~~----~-~~~~~~~~~Dv~------~ 65 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGA---EVLLTGRNE------SNIARIREE----F-GPRVHALRSDIA------D 65 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----H-GGGEEEEECCTT------C
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHHH----h-CCcceEEEccCC------C
Confidence 5689999999999999999999999975 688888863 222222111 1 11233344 887 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccC
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~ 238 (545)
.++++.+++ .+|++|||||... ..+.++..+++|+.|+.++++++... .+-.++|++||..+...
T Consensus 66 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 145 (255)
T 4eso_A 66 LNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGG 145 (255)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSB
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCC
Confidence 566655543 7899999999753 23567888999999999999998763 12258999999976543
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
.. ....|+.||+..+.+.+.++ .++++..++||.|.
T Consensus 146 ~~---------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~ 186 (255)
T 4eso_A 146 HP---------------------------------------GMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFID 186 (255)
T ss_dssp CT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBC
T ss_pred CC---------------------------------------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCccc
Confidence 21 11679999999999887765 58999999999998
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
++..... ++... ....+...... . .....+..++|+|++++.++.. .. ...+.++++.++
T Consensus 187 T~~~~~~-~~~~~--~~~~~~~~~~~-~--------~p~~r~~~pedvA~~v~~L~s~-~~-----~itG~~i~vdGG 246 (255)
T 4eso_A 187 TPTKGVA-GITEA--ERAEFKTLGDN-I--------TPMKRNGTADEVARAVLFLAFE-AT-----FTTGAKLAVDGG 246 (255)
T ss_dssp CSSTTCT-TSCHH--HHHHHHHHHHH-H--------STTSSCBCHHHHHHHHHHHHHT-CT-----TCCSCEEEESTT
T ss_pred Ccccccc-cCChh--hHHHHHHHHhc-c--------CCCCCCcCHHHHHHHHHHHcCc-Cc-----CccCCEEEECCC
Confidence 7643211 00000 00011111111 0 1123467899999999988764 21 135889999887
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=155.43 Aligned_cols=228 Identities=13% Similarity=0.019 Sum_probs=152.7
Q ss_pred hhcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l 170 (545)
..++|+|+||||+ |+||++++++|++.|. +|+++.|+.. ..+.+...... . ....++. |++
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~---~V~~~~r~~~---~~~~~~~~~~~----~--~~~~~~~~Dv~---- 74 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA---ELAFTYVGDR---FKDRITEFAAE----F--GSELVFPCDVA---- 74 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC---EEEEEESSGG---GHHHHHHHHHH----T--TCCCEEECCTT----
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC---CEEEEecchh---hHHHHHHHHHH----c--CCcEEEECCCC----
Confidence 3678999999999 9999999999999875 6888888732 22233222111 1 1233444 888
Q ss_pred CCCHHHHHHHhc-------CccEEEEcccccc------------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEE
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLR------------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYV 230 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~------------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~v 230 (545)
+.+++..+++ .+|++|||||... ..+.++..+++|+.|+.++++++... .+-.++|++
T Consensus 75 --~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 152 (271)
T 3ek2_A 75 --DDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTL 152 (271)
T ss_dssp --CHHHHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEE
Confidence 5667766665 6799999999753 23456788999999999999998763 123489999
Q ss_pred eccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 231 STAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 231 SS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
||..+.... .....|+.||+..+.+.+.++ .++++.
T Consensus 153 sS~~~~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~ 193 (271)
T 3ek2_A 153 SYLGAERAI---------------------------------------PNYNTMGLAKAALEASVRYLAVSLGAKGVRVN 193 (271)
T ss_dssp ECGGGTSBC---------------------------------------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred eccccccCC---------------------------------------CCccchhHHHHHHHHHHHHHHHHHHhcCcEEE
Confidence 998765321 112689999999999988765 589999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
+++||.|.++.... .............. .....+..++|+|++++.++..... ...+++
T Consensus 194 ~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~pedva~~i~~l~s~~~~-----~~tG~~ 252 (271)
T 3ek2_A 194 AISAGPIKTLAASG-------IKSFGKILDFVESN---------SPLKRNVTIEQVGNAGAFLLSDLAS-----GVTAEV 252 (271)
T ss_dssp EEEECCC-----CC-------CHHHHHHHHHHHHH---------STTSSCCCHHHHHHHHHHHHSGGGT-----TCCSEE
T ss_pred EEecCcccchhhhc-------ccchHHHHHHHHhc---------CCcCCCCCHHHHHHHHHHHcCcccC-----CeeeeE
Confidence 99999998753221 11111222221111 1122367899999999998875432 235789
Q ss_pred EEeecCCCCcccHHHH
Q psy16252 386 YNYVNSKDNPLTWGEF 401 (545)
Q Consensus 386 y~i~~~~~~~~t~~el 401 (545)
+++.++ ..++..++
T Consensus 253 i~vdgG--~~~~~~~~ 266 (271)
T 3ek2_A 253 MHVDSG--FNAVVGGM 266 (271)
T ss_dssp EEESTT--GGGBCCCC
T ss_pred EEECCC--eeeehhhh
Confidence 999887 55555444
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-16 Score=145.54 Aligned_cols=197 Identities=16% Similarity=0.127 Sum_probs=137.4
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|+||||+|+||++++++|++.|+ +|++..|+. ++++.....+-.. ......++. |++ +.+
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~---~V~~~~r~~------~~~~~~~~~~~~~-~~~~~~~~~~D~~------~~~ 65 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY---ALALGARSV------DRLEKIAHELMQE-QGVEVFYHHLDVS------KAE 65 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHHHH-HCCCEEEEECCTT------CHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHHHHHhh-cCCeEEEEEeccC------CHH
Confidence 68999999999999999999999975 688888863 2222222111000 011233344 888 667
Q ss_pred HHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccCC
Q psy16252 176 DKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 176 ~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~~ 239 (545)
++.++++ ++|++||+||... ..+.++..+++|+.|+.++++++... .+..++|++||.......
T Consensus 66 ~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~ 145 (235)
T 3l77_A 66 SVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLI 145 (235)
T ss_dssp HHHHHCC-HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccC
Confidence 7777776 7899999999753 23567888999999999999988642 123567777776544221
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeeccC
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVISTW 316 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~~ 316 (545)
.....|+.||+..+.+.+.+. .++++..++||.|-.+.
T Consensus 146 ---------------------------------------~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~ 186 (235)
T 3l77_A 146 ---------------------------------------PYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYF 186 (235)
T ss_dssp ---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSST
T ss_pred ---------------------------------------CCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccc
Confidence 112679999999999998764 68999999999986542
Q ss_pred CCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 317 KEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
....+ .......++.++|+|++++.++..+..
T Consensus 187 ~~~~~--------------------------~~~~~~~~~~p~dva~~v~~l~~~~~~ 218 (235)
T 3l77_A 187 GGSKP--------------------------GKPKEKGYLKPDEIAEAVRCLLKLPKD 218 (235)
T ss_dssp TTCCS--------------------------CCCGGGTCBCHHHHHHHHHHHHTSCTT
T ss_pred ccccC--------------------------CcccccCCCCHHHHHHHHHHHHcCCCC
Confidence 21110 011122578899999999999887654
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-16 Score=150.99 Aligned_cols=215 Identities=11% Similarity=0.074 Sum_probs=142.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||+++++.|++.|. +|++..|+. +++.+.... + .....++. |++ +
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~------~~~~~~~~~----~-~~~~~~~~~Dv~------d 84 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQGA---IVGLHGTRE------DKLKEIAAD----L-GKDVFVFSANLS------D 84 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----H-CSSEEEEECCTT------S
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHHH----h-CCceEEEEeecC------C
Confidence 5689999999999999999999999975 677777753 222222111 1 11223334 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||..+.
T Consensus 85 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~ 164 (266)
T 3grp_A 85 RKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGV 164 (266)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC---
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHc
Confidence 666666654 78999999997532 3567888999999977777665431 255799999998664
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..+.+.+.++ .++++.+++||.
T Consensus 165 ~~~~---------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~ 205 (266)
T 3grp_A 165 VGNP---------------------------------------GQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGF 205 (266)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred CCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCc
Confidence 3210 11579999998888887664 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.++..... . .........+ .....+..++|+|++++.++..... ...++++++.++
T Consensus 206 v~t~~~~~~-------~--~~~~~~~~~~---------~p~~r~~~~edvA~~v~~L~s~~~~-----~itG~~i~vdGG 262 (266)
T 3grp_A 206 IKSAMTDKL-------N--EKQKEAIMAM---------IPMKRMGIGEEIAFATVYLASDEAA-----YLTGQTLHINGG 262 (266)
T ss_dssp BCSHHHHTC-------C--HHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred CCCchhhcc-------C--HHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccc-----CccCCEEEECCC
Confidence 977532111 0 1122222211 1223467899999999988765432 224789998876
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=153.90 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=147.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc---CCCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT---CSTSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~---~~~~~~-Dl~~~~l 170 (545)
+++|+|+||||+|+||+++++.|++.|. +|+++.|+.... +.+. ..+... ...++. |++
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~---~~~~-------~~l~~~~~~~~~~~~~Dv~---- 101 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAGA---NVAVAARSPREL---SSVT-------AELGELGAGNVIGVRLDVS---- 101 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSGGGG---HHHH-------HHHTTSSSSCEEEEECCTT----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHH---HHHH-------HHHHhhCCCcEEEEEEeCC----
Confidence 5689999999999999999999999975 688888875321 1111 112211 223334 888
Q ss_pred CCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEec
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVST 232 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS 232 (545)
+.++++.+++ .+|++||+||... ..+.++..+++|+.|+.++++++. +. +..++|++||
T Consensus 102 --d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iV~isS 178 (293)
T 3rih_A 102 --DPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS-GRGRVILTSS 178 (293)
T ss_dssp --CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH-SSCEEEEECC
T ss_pred --CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEeC
Confidence 5666665554 6799999999753 235678889999999999999874 33 5679999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..+..... .....|+.||+..+.+.+.++ .|+++.++
T Consensus 179 ~~~~~~~~--------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v 220 (293)
T 3rih_A 179 ITGPVTGY--------------------------------------PGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAI 220 (293)
T ss_dssp SBTTTBBC--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred hhhccCCC--------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEE
Confidence 87531100 112689999999999988765 68999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
+||.|.++.... .. ........... ....+..++|+|++++.++..... ...+++++
T Consensus 221 ~PG~v~t~~~~~-------~~--~~~~~~~~~~~---------p~~r~~~p~dvA~~v~fL~s~~a~-----~itG~~i~ 277 (293)
T 3rih_A 221 LPGNILTEGLVD-------MG--EEYISGMARSI---------PMGMLGSPVDIGHLAAFLATDEAG-----YITGQAIV 277 (293)
T ss_dssp EECSBCCHHHHH-------TC--HHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred ecCCCcCcchhh-------cc--HHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCcccc-----CCCCCEEE
Confidence 999998863211 00 12222222211 112356789999999988765432 23578999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 278 vdGG 281 (293)
T 3rih_A 278 VDGG 281 (293)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9877
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=156.82 Aligned_cols=232 Identities=12% Similarity=0.084 Sum_probs=150.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc-----CCCccc-CCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT-----CSTSKE-SAQAP 168 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~-----~~~~~~-Dl~~~ 168 (545)
+++|+|+||||+|+||+++++.|++.|+ +|+++.|+.. +++..... +... ...++. |++
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~---~V~~~~r~~~------~~~~~~~~----l~~~~~~~~~~~~~~~Dv~-- 88 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGA---QVTITGRNED------RLEETKQQ----ILKAGVPAEKINAVVADVT-- 88 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHH----HHHTTCCGGGEEEEECCTT--
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHH----HHhcCCCCceEEEEecCCC--
Confidence 4689999999999999999999999875 6888888632 22221111 1111 223344 888
Q ss_pred CCCCCHHHHHHHhc-------CccEEEEcccccc-----c----hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEE
Q psy16252 169 DLGLSPDDKRLVTS-------KVNLVFHCAATLR-----F----DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTY 229 (545)
Q Consensus 169 ~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~-----~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~ 229 (545)
+.+++..+++ ++|+||||||... + .+.++..+++|+.|+.++++++... .+ .++|+
T Consensus 89 ----d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~ 163 (297)
T 1xhl_A 89 ----EASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVN 163 (297)
T ss_dssp ----SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEE
T ss_pred ----CHHHHHHHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEE
Confidence 5666666654 7899999999642 1 2457788999999999999887652 23 69999
Q ss_pred EeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCE
Q psy16252 230 VSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPV 304 (545)
Q Consensus 230 vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~ 304 (545)
+||..+..... .....|+.||+..+.+.+.++ .++++
T Consensus 164 isS~~~~~~~~--------------------------------------~~~~~Y~asKaa~~~l~~~la~el~~~gI~v 205 (297)
T 1xhl_A 164 VSSIVAGPQAH--------------------------------------SGYPYYACAKAALDQYTRCTAIDLIQHGVRV 205 (297)
T ss_dssp ECCGGGSSSCC--------------------------------------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EcCchhccCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 99987653210 011579999999999887764 68999
Q ss_pred EEEccceeeccCCCCCCCCccCcc-chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc-ccccCCCCCC
Q psy16252 305 CIFRPSIVISTWKEPIPGWIDNLY-GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG-HERFHKDPSC 382 (545)
Q Consensus 305 ~i~Rp~~i~g~~~~~~~g~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~-~~~~~~~~~~ 382 (545)
++++||.|.++....... ..... ........... ......+..++|+|++++.++... .. ...
T Consensus 206 ~~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~l~s~~~~~-----~it 270 (297)
T 1xhl_A 206 NSVSPGAVATGFMGAMGL-PETASDKLYSFIGSRKE---------CIPVGHCGKPEEIANIIVFLADRNLSS-----YII 270 (297)
T ss_dssp EEEEECCBCSSHHHHTTC-CHHHHHHHHHHHHHCTT---------TCTTSSCBCHHHHHHHHHHHHCHHHHT-----TCC
T ss_pred EEEeeCCCcCcccccccc-ccccccchHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCCcccC-----Ccc
Confidence 999999997752110000 00000 00011111111 011224789999999999888654 21 124
Q ss_pred CCEEEeecCCCCcccHHHH
Q psy16252 383 LPIYNYVNSKDNPLTWGEF 401 (545)
Q Consensus 383 ~~vy~i~~~~~~~~t~~el 401 (545)
+.++++.++ ..+.+.+.
T Consensus 271 G~~i~vdGG--~~~~~~~~ 287 (297)
T 1xhl_A 271 GQSIVADGG--STLVMGMQ 287 (297)
T ss_dssp SCEEEESTT--GGGCCGGG
T ss_pred CcEEEECCC--cccccccc
Confidence 789998887 44544443
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-16 Score=151.36 Aligned_cols=219 Identities=13% Similarity=0.087 Sum_probs=146.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|. +|+++.|.... ..+.+...+.. . .....++. |++ +
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~~~--~~~~~~~~~~~----~-~~~~~~~~~D~~------~ 90 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMGL---KVWINYRSNAE--VADALKNELEE----K-GYKAAVIKFDAA------S 90 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHH--HHHHHHHHHHH----T-TCCEEEEECCTT------C
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCHH--HHHHHHHHHHh----c-CCceEEEECCCC------C
Confidence 5689999999999999999999999875 68888885321 11112111110 0 11223344 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+++.++++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||..+.
T Consensus 91 ~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 170 (271)
T 4iin_A 91 ESDFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGE 170 (271)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhc
Confidence 666666654 78999999997532 3567888999999999988877542 245799999998764
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+.++ .++++.+++||.
T Consensus 171 ~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~ 211 (271)
T 4iin_A 171 RGN---------------------------------------MGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGF 211 (271)
T ss_dssp HCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECS
T ss_pred CCC---------------------------------------CCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCc
Confidence 321 112689999999999987765 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.++.....+ ..... ..........+.+++|+|++++.++..... ...++++++.++
T Consensus 212 v~T~~~~~~~---------~~~~~---------~~~~~~~~~~~~~p~dvA~~i~~l~s~~~~-----~itG~~i~vdGG 268 (271)
T 4iin_A 212 IETDMNANLK---------DELKA---------DYVKNIPLNRLGSAKEVAEAVAFLLSDHSS-----YITGETLKVNGG 268 (271)
T ss_dssp BCCC------------------------------CGGGCTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred ccCCchhhhc---------HHHHH---------HHHhcCCcCCCcCHHHHHHHHHHHhCCCcC-----CCcCCEEEeCCC
Confidence 8765322110 00000 011112233578899999999988865432 235789988876
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=153.15 Aligned_cols=218 Identities=11% Similarity=0.029 Sum_probs=137.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+.+|+++||||+|+||+++++.|++.|. +|+++.|... ++++.... .+... ...++. |++
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~Dv~----- 89 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGF---DIAITGIGDA-----EGVAPVIA----ELSGLGARVIFLRADLA----- 89 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCCH-----HHHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCC---eEEEEeCCCH-----HHHHHHHH----HHHhcCCcEEEEEecCC-----
Confidence 4689999999999999999999999875 6777776431 22222211 11111 233444 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc---------chHHHHHHHHHhHHHHHHHHHHHHHc---cC---CceEEE
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR---------FDEELKEAIRTNMCATQTMLDLAKQC---KN---LKMFTY 229 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~---------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~---~~~~v~ 229 (545)
+.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+ ..++|+
T Consensus 90 -d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~ 168 (280)
T 4da9_A 90 -DLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIIN 168 (280)
T ss_dssp -SGGGHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 4455555554 7899999999731 23567888899999999998887652 01 458999
Q ss_pred EeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCE
Q psy16252 230 VSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPV 304 (545)
Q Consensus 230 vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~ 304 (545)
+||..+.... .....|+.||+..+.+.+.++ .++++
T Consensus 169 isS~~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~v 209 (280)
T 4da9_A 169 ITSVSAVMTS---------------------------------------PERLDYCMSKAGLAAFSQGLALRLAETGIAV 209 (280)
T ss_dssp ECCC----------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEE
T ss_pred EcchhhccCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHHHHhCcEE
Confidence 9998765321 112579999999999988765 67999
Q ss_pred EEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC
Q psy16252 305 CIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP 384 (545)
Q Consensus 305 ~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~ 384 (545)
..++||.|.++....... ........+ ......+..++|||++++.++..... ...++
T Consensus 210 n~v~PG~v~T~~~~~~~~---------~~~~~~~~~--------~~p~~r~~~pedvA~~v~~L~s~~~~-----~itG~ 267 (280)
T 4da9_A 210 FEVRPGIIRSDMTAAVSG---------KYDGLIESG--------LVPMRRWGEPEDIGNIVAGLAGGQFG-----FATGS 267 (280)
T ss_dssp EEEEECCBCC---------------------------------------CCBCHHHHHHHHHHHHTSTTG-----GGTTC
T ss_pred EEEeecCCcCCchhhcch---------hHHHHHhhc--------CCCcCCcCCHHHHHHHHHHHhCcccc-----CCCCC
Confidence 999999997753221100 000000000 11123467899999999988765432 12478
Q ss_pred EEEeecC
Q psy16252 385 IYNYVNS 391 (545)
Q Consensus 385 vy~i~~~ 391 (545)
++++.++
T Consensus 268 ~i~vdGG 274 (280)
T 4da9_A 268 VIQADGG 274 (280)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9998876
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-16 Score=150.87 Aligned_cols=222 Identities=13% Similarity=0.044 Sum_probs=145.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl~ 173 (545)
+|+++||||+|+||++++++|++.|+ +|+++.|+... ..+..... .++. ....++. |++ +
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~----~~~~~~~~----~~~~~~~~~~~~~~Dv~------~ 64 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGF---DIAVADLPQQE----EQAAETIK----LIEAADQKAVFVGLDVT------D 64 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEECGGGH----HHHHHHHH----HHHTTTCCEEEEECCTT------C
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCcch----HHHHHHHH----HHHhcCCcEEEEEccCC------C
Confidence 58999999999999999999999975 68888886431 00222111 1111 1223334 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCC-ceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNL-KMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~-~~~v~vSS~~v 235 (545)
.++++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+. .++|++||..+
T Consensus 65 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 144 (258)
T 3a28_C 65 KANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAA 144 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchh
Confidence 666666654 78999999997532 3567888999999999999888652 244 79999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..|.+.+.++ .++++++++||
T Consensus 145 ~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG 185 (258)
T 3a28_C 145 IQGF---------------------------------------PILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPG 185 (258)
T ss_dssp TSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEC
T ss_pred ccCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECC
Confidence 5321 112679999999999888764 58999999999
Q ss_pred eeeccCCCCCCCCccCcc---ch--HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 311 IVISTWKEPIPGWIDNLY---GP--TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~---~~--~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
.|.++.... +..... +. ......... ......+..++|+|++++.++..... ...+.+
T Consensus 186 ~v~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~p~dvA~~v~~l~s~~~~-----~~tG~~ 248 (258)
T 3a28_C 186 IVGTGMWEQ---IDAELSKINGKPIGENFKEYSS---------SIALGRPSVPEDVAGLVSFLASENSN-----YVTGQV 248 (258)
T ss_dssp CBCSHHHHH---HHHHHHHHHCCCTTHHHHHHHT---------TCTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCE
T ss_pred ccCChhhhh---hhhhhccccCCchHHHHHHHHh---------cCCCCCccCHHHHHHHHHHHhCcccC-----CCCCCE
Confidence 986642100 000000 00 001111111 01112478999999999998865432 124788
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
+++.++
T Consensus 249 i~vdGG 254 (258)
T 3a28_C 249 MLVDGG 254 (258)
T ss_dssp EEESSS
T ss_pred EEECCC
Confidence 888776
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-16 Score=150.15 Aligned_cols=211 Identities=12% Similarity=0.068 Sum_probs=142.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||++++++|++.|+ +|+++.|... +.... + .....++. |++ +
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~-----~~~~~--------~-~~~~~~~~~D~~------~ 63 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAGA---QVVVLDIRGE-----DVVAD--------L-GDRARFAAADVT------D 63 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESSCH-----HHHHH--------T-CTTEEEEECCTT------C
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCchH-----HHHHh--------c-CCceEEEECCCC------C
Confidence 4689999999999999999999999976 6888888421 11111 1 11223334 887 5
Q ss_pred HHHHHHHhc------CccEEEEcccccc-----------chHHHHHHHHHhHHHHHHHHHHHHHc-----------cCCc
Q psy16252 174 PDDKRLVTS------KVNLVFHCAATLR-----------FDEELKEAIRTNMCATQTMLDLAKQC-----------KNLK 225 (545)
Q Consensus 174 ~~~~~~l~~------~vd~Vih~Aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~~a~~~-----------~~~~ 225 (545)
.+++..+++ .+|++|||||... ..+.++..+++|+.|+.++++++... .+-.
T Consensus 64 ~~~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g 143 (257)
T 3tl3_A 64 EAAVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERG 143 (257)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSE
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 666666665 8999999999742 23456888999999999999988753 1235
Q ss_pred eEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----c
Q psy16252 226 MFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----Q 300 (545)
Q Consensus 226 ~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~ 300 (545)
++|++||..+..... ....|+.||+..+.+.+.++ .
T Consensus 144 ~iv~isS~~~~~~~~---------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~ 184 (257)
T 3tl3_A 144 VIINTASVAAFDGQI---------------------------------------GQAAYSASKGGVVGMTLPIARDLASH 184 (257)
T ss_dssp EEEEECCCC--CCHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEEEEcchhhcCCCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHhccc
Confidence 899999987653210 01579999998888887664 6
Q ss_pred CCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCC
Q psy16252 301 FFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDP 380 (545)
Q Consensus 301 ~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~ 380 (545)
++++..++||.|.++.... .. ........... + ....+..++|+|++++.++.....
T Consensus 185 gI~vn~v~PG~v~T~~~~~-------~~--~~~~~~~~~~~-~-------~~~r~~~p~dva~~v~~l~s~~~i------ 241 (257)
T 3tl3_A 185 RIRVMTIAPGLFDTPLLAS-------LP--EEARASLGKQV-P-------HPSRLGNPDEYGALAVHIIENPML------ 241 (257)
T ss_dssp TEEEEEEEECSBCCTTC----------C--HHHHHHHHHTS-S-------SSCSCBCHHHHHHHHHHHHHCTTC------
T ss_pred CcEEEEEEecCccChhhhh-------cc--HHHHHHHHhcC-C-------CCCCccCHHHHHHHHHHHhcCCCC------
Confidence 8999999999997753221 11 11222221111 0 013478899999999998876433
Q ss_pred CCCCEEEeecC
Q psy16252 381 SCLPIYNYVNS 391 (545)
Q Consensus 381 ~~~~vy~i~~~ 391 (545)
.++++++.++
T Consensus 242 -tG~~i~vdGG 251 (257)
T 3tl3_A 242 -NGEVIRLDGA 251 (257)
T ss_dssp -CSCEEEESTT
T ss_pred -CCCEEEECCC
Confidence 5889998876
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-16 Score=149.75 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=149.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+||||||+|+||+++++.|++.|. +|+++.|+. +++..... .+... ...++. |++
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~------~~~~~~~~----~~~~~~~~~~~~~~Dv~----- 67 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREGA---KVVVTARNG------NALAELTD----EIAGGGGEAAALAGDVG----- 67 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEECCSCH------HHHHHHHH----HHTTTTCCEEECCCCTT-----
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HHHhcCCcEEEEECCCC-----
Confidence 4689999999999999999999999975 688888863 22222211 12211 223334 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.+++..+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+-.++|++||.
T Consensus 68 -~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~ 146 (280)
T 3tox_A 68 -DEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSF 146 (280)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 5666666654 7899999999652 13567888999999999999987642 234699999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.++.... .....|+.||+..+.+.+.++ .++++.+++
T Consensus 147 ~~~~~~~--------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~ 188 (280)
T 3tox_A 147 VGHTAGF--------------------------------------AGVAPYAASKAGLIGLVQALAVELGARGIRVNALL 188 (280)
T ss_dssp BTTTBCC--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred hhCcCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEE
Confidence 7652110 112679999999999988765 589999999
Q ss_pred cceeeccCCCC-CCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 309 PSIVISTWKEP-IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 309 p~~i~g~~~~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
||.|.++.... .++ .. ......... ......+..++|+|++++.++..... ...+++++
T Consensus 189 PG~v~T~~~~~~~~~-----~~-~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~a~-----~itG~~i~ 248 (280)
T 3tox_A 189 PGGTDTPANFANLPG-----AA-PETRGFVEG---------LHALKRIARPEEIAEAALYLASDGAS-----FVTGAALL 248 (280)
T ss_dssp ECSBSSTTSGGGSTT-----CC-THHHHHHHT---------TSTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred ECCCCCchhhhhccc-----cC-HHHHHHHhc---------cCccCCCcCHHHHHHHHHHHhCcccc-----CCcCcEEE
Confidence 99998864221 110 00 111111111 11123478899999999998875432 23588999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 249 vdGG 252 (280)
T 3tox_A 249 ADGG 252 (280)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-16 Score=147.11 Aligned_cols=212 Identities=13% Similarity=0.056 Sum_probs=144.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||||+||++++++|++.|+ +|+++.|+. +++..... .+ ...++. |++ +
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~------~~~~~~~~----~~---~~~~~~~D~~------~ 60 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGA---RLVACDIEE------GPLREAAE----AV---GAHPVVMDVA------D 60 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----TT---TCEEEECCTT------C
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHH----Hc---CCEEEEecCC------C
Confidence 4579999999999999999999999875 688888863 22222111 11 123333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++++.+++ ++|+||||||.... .+.++..+++|+.|+.++++++... .+..++|++||....
T Consensus 61 ~~~~~~~~~~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~ 140 (245)
T 1uls_A 61 PASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYL 140 (245)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhc
Confidence 666666654 58999999997532 3567888999999999999888652 246799999998732
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
+.. ....|+.||+..+.+.+..+ .++++++++||.
T Consensus 141 ~~~----------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~ 180 (245)
T 1uls_A 141 GNL----------------------------------------GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGF 180 (245)
T ss_dssp CCT----------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred CCC----------------------------------------CchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCc
Confidence 211 11579999999888887664 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.++.... +. ........... + ...++.++|+|++++.++..... ...++++++.++
T Consensus 181 v~t~~~~~-------~~--~~~~~~~~~~~----p-----~~~~~~~~dvA~~v~~l~s~~~~-----~~tG~~~~vdgG 237 (245)
T 1uls_A 181 IETRMTAK-------VP--EKVREKAIAAT----P-----LGRAGKPLEVAYAALFLLSDESS-----FITGQVLFVDGG 237 (245)
T ss_dssp BCCTTTSS-------SC--HHHHHHHHHTC----T-----TCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred CcCcchhh-------cC--HHHHHHHHhhC----C-----CCCCcCHHHHHHHHHHHhCchhc-----CCcCCEEEECCC
Confidence 97653211 11 11111111110 0 11378899999999988765432 124788888776
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=154.28 Aligned_cols=218 Identities=13% Similarity=0.105 Sum_probs=148.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|+. +++..... .++.. ...++. |++
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G~---~V~~~~r~~------~~~~~~~~----~l~~~~~~~~~~~~Dv~----- 85 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAGA---RILINGTDP------SRVAQTVQ----EFRNVGHDAEAVAFDVT----- 85 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEECCSCH------HHHHHHHH----HHHHTTCCEEECCCCTT-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHH----HHHhcCCceEEEEcCCC-----
Confidence 5689999999999999999999999975 688877753 22222211 12111 223344 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+++.++++ ++|+||||||... ..+.++..+++|+.|+.++++++... .+..++|++||..
T Consensus 86 -d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~ 164 (271)
T 4ibo_A 86 -SESEIIEAFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLT 164 (271)
T ss_dssp -CHHHHHHHHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred -CHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHH
Confidence 6667766665 7899999999752 23567888999999999998877552 2446999999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... .....|+.||+..+.+.+.++ .++++..++|
T Consensus 165 ~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~P 205 (271)
T 4ibo_A 165 SELAR---------------------------------------ATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGP 205 (271)
T ss_dssp GTSBC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hCCCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEe
Confidence 64321 112679999999999988765 6899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++.... .............+ .....+..++|+|++++.++..... ...++++++.
T Consensus 206 G~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~r~~~pedva~~v~~L~s~~~~-----~itG~~i~vd 264 (271)
T 4ibo_A 206 GYMLTDMNQA-------LIDNPEFDAWVKAR---------TPAKRWGKPQELVGTAVFLSASASD-----YVNGQIIYVD 264 (271)
T ss_dssp CSBCSGGGHH-------HHHCHHHHHHHHHH---------STTCSCBCGGGGHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred ccEeCcchhh-------cccCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccc-----CCCCcEEEEC
Confidence 9997753210 00001111111111 1122467899999999988765432 2357899998
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 265 GG 266 (271)
T 4ibo_A 265 GG 266 (271)
T ss_dssp TT
T ss_pred CC
Confidence 87
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-16 Score=151.16 Aligned_cols=197 Identities=16% Similarity=0.132 Sum_probs=142.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|+||||+|+||++++++|++.|+ +|+++.|+...... ..+. |++ +.+
T Consensus 22 ~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~~~~~~--------------------~~~~~d~~------d~~ 72 (251)
T 3orf_A 22 SKNILVLGGSGALGAEVVKFFKSKSW---NTISIDFRENPNAD--------------------HSFTIKDS------GEE 72 (251)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCTTSS--------------------EEEECSCS------SHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCcccccc--------------------cceEEEeC------CHH
Confidence 68999999999999999999999875 68899998654221 0011 655 556
Q ss_pred HHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCC
Q psy16252 176 DKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 176 ~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~ 239 (545)
+++.+++ .+|+||||||... ..+.++..+++|+.|+.++++++... ..-.++|++||..+....
T Consensus 73 ~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~ 152 (251)
T 3orf_A 73 EIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRT 152 (251)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCC
Confidence 6666654 5699999999632 13556788899999999999998863 112489999998765321
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEEcccee
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIFRPSIV 312 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~Rp~~i 312 (545)
. ....|+.||+..|.+.+.++ .++++.+++||.|
T Consensus 153 ~---------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v 193 (251)
T 3orf_A 153 S---------------------------------------GMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTL 193 (251)
T ss_dssp T---------------------------------------TBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCB
T ss_pred C---------------------------------------CCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcC
Confidence 1 11679999999999998765 3689999999988
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++ +..... .......+++++|+|++++.++..+.. ....++++++.++
T Consensus 194 ~t~-----------------~~~~~~---------~~~~~~~~~~~~dva~~i~~l~~~~~~----~~~tG~~i~v~~g 242 (251)
T 3orf_A 194 DTP-----------------TNRKYM---------SDANFDDWTPLSEVAEKLFEWSTNSDS----RPTNGSLVKFETK 242 (251)
T ss_dssp CCH-----------------HHHHHC---------TTSCGGGSBCHHHHHHHHHHHHHCGGG----CCCTTCEEEEEEE
T ss_pred cCc-----------------chhhhc---------ccccccccCCHHHHHHHHHHHhcCccc----cCCcceEEEEecC
Confidence 654 111111 112345678999999999999877221 1235789998876
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-16 Score=149.53 Aligned_cols=218 Identities=11% Similarity=0.063 Sum_probs=143.6
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~l 170 (545)
..++|+||||||+|+||++++++|++.|+ +|+++.|..... ..+.+.. +... ...++. |++
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~---~v~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~Dv~---- 73 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF---RVVAGCGPNSPR-RVKWLED--------QKALGFDFYASEGNVG---- 73 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTE---EEEEEECTTCSS-HHHHHHH--------HHHTTCCCEEEECCTT----
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCCHHH-HHHHHHH--------HHhcCCeeEEEecCCC----
Confidence 35689999999999999999999999875 577766433221 1111111 1111 223333 887
Q ss_pred CCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++.+... .+..++|++||.
T Consensus 74 --~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~ 151 (256)
T 3ezl_A 74 --DWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSV 151 (256)
T ss_dssp --CHHHHHHHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred --CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcch
Confidence 5566666654 7899999999753 23567889999999988887776431 255799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..+.+.+.++ .++++.+++
T Consensus 152 ~~~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~ 192 (256)
T 3ezl_A 152 NGQKGQ---------------------------------------FGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVS 192 (256)
T ss_dssp CGGGSC---------------------------------------SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhccCC---------------------------------------CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 765321 112689999998888887654 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++.... .. .......... .....+..++|+|++++.++..... ...++++++
T Consensus 193 PG~v~t~~~~~-------~~--~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~-----~~tG~~i~v 249 (256)
T 3ezl_A 193 PGYIGTDMVKA-------IR--PDVLEKIVAT---------IPVRRLGSPDEIGSIVAWLASEESG-----FSTGADFSL 249 (256)
T ss_dssp ECSBCCHHHHT-------SC--HHHHHHHHHH---------STTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred ECcccCccccc-------cC--HHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCCccc-----CCcCcEEEE
Confidence 99997753211 10 1122222111 1123467899999999988754332 235789999
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 250 dgG 252 (256)
T 3ezl_A 250 NGG 252 (256)
T ss_dssp STT
T ss_pred CCC
Confidence 876
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-16 Score=148.64 Aligned_cols=220 Identities=10% Similarity=-0.001 Sum_probs=143.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lgl~ 173 (545)
+|+|+||||+|+||++++++|++.|+ +|+++.|+.. +++.... .+.. ....++. |++ +
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~------~ 62 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGF---AVAIADYNDA------TAKAVAS----EINQAGGHAVAVKVDVS------D 62 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHHTTCCEEEEECCTT------S
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCcEEEEEecCC------C
Confidence 58999999999999999999999975 6888888632 2222111 1111 1223334 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cC-CceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KN-LKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~-~~~~v~vSS~~v 235 (545)
.+++.++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..++|++||..+
T Consensus 63 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 142 (256)
T 1geg_A 63 RDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAG 142 (256)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhh
Confidence 667776665 79999999996431 3556788999999999988877642 13 579999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... ....|+.||+..+.+.+.++ .++++++++||
T Consensus 143 ~~~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG 183 (256)
T 1geg_A 143 HVGNP---------------------------------------ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPG 183 (256)
T ss_dssp TSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred cCCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEC
Confidence 43210 11579999999999887764 58999999999
Q ss_pred eeeccCCCCCCCCccCccc-----hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 311 IVISTWKEPIPGWIDNLYG-----PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
.|.++..... ...+.. .......... ......+..++|+|++++.++..... ...+++
T Consensus 184 ~v~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~p~dvA~~v~~l~s~~~~-----~~tG~~ 246 (256)
T 1geg_A 184 IVKTPMWAEI---DRQVSEAAGKPLGYGTAEFAK---------RITLGRLSEPEDVAACVSYLASPDSD-----YMTGQS 246 (256)
T ss_dssp SBSSHHHHHH---HHHHHHHHTCCTTHHHHHHHT---------TCTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCE
T ss_pred CCccchhhhh---hhhccccccCChHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCcccc-----CCCCCE
Confidence 9977521000 000000 0000011111 01112478999999999988765432 124788
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
+++.++
T Consensus 247 i~vdGG 252 (256)
T 1geg_A 247 LLIDGG 252 (256)
T ss_dssp EEESSS
T ss_pred EEeCCC
Confidence 888776
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-17 Score=154.16 Aligned_cols=207 Identities=12% Similarity=0.091 Sum_probs=142.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+....... ..+. |++ +
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~-------------------~~~~~D~~------~ 64 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADGH---KVAVTHRGSGAPKGL-------------------FGVEVDVT------D 64 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSSCCCTTS-------------------EEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChHHHHHh-------------------cCeeccCC------C
Confidence 5689999999999999999999999875 688888875432110 0022 777 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 65 ~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 144 (247)
T 1uzm_A 65 SDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGL 144 (247)
T ss_dssp HHHHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhc
Confidence 566665554 67999999997532 3567888999999999999987641 256899999998654
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+.++ .++++++++||.
T Consensus 145 ~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~ 185 (247)
T 1uzm_A 145 WGI---------------------------------------GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGY 185 (247)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred cCC---------------------------------------CCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCC
Confidence 221 011579999998888887654 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.++... .+. ......... . .....+++++|+|++++.++..... ...++++++.++
T Consensus 186 v~t~~~~-------~~~--~~~~~~~~~-~--------~p~~~~~~~~dvA~~~~~l~s~~~~-----~~~G~~i~vdgG 242 (247)
T 1uzm_A 186 IDTDMTR-------ALD--ERIQQGALQ-F--------IPAKRVGTPAEVAGVVSFLASEDAS-----YISGAVIPVDGG 242 (247)
T ss_dssp BCCHHHH-------HSC--HHHHHHHGG-G--------CTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred Ccccchh-------hcC--HHHHHHHHh-c--------CCCCCCcCHHHHHHHHHHHcCcccc-----CCcCCEEEECCC
Confidence 8664211 000 111111111 0 0112478999999999988765322 124788988876
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-16 Score=148.38 Aligned_cols=218 Identities=9% Similarity=0.055 Sum_probs=141.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|.... ...... ..++.. ...++. |++
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~Dv~----- 68 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEGA---NVVLTYNGAAE-----GAATAV----AEIEKLGRSALAIKADLT----- 68 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECSSCH-----HHHHHH----HHHHTTTSCCEEEECCTT-----
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCCHH-----HHHHHH----HHHHhcCCceEEEEcCCC-----
Confidence 4689999999999999999999999976 57766454321 111111 111111 223344 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHcc-CCceEEEEecccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQCK-NLKMFTYVSTAFS 235 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~~~~~v~vSS~~v 235 (545)
+.++++.+++ ++|++||+||... ..+.++..+++|+.|+.++++++...- .-.++|++||..+
T Consensus 69 -~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~ 147 (259)
T 3edm_A 69 -NAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAG 147 (259)
T ss_dssp -CHHHHHHHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHh
Confidence 5666666665 7899999998641 135568889999999999999997641 1248999999876
Q ss_pred c-cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccc
Q psy16252 236 N-SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~-~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~ 310 (545)
. ... .....|+.||+..+.+.+.++ +++++..+.||
T Consensus 148 ~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG 188 (259)
T 3edm_A 148 RDGGG---------------------------------------PGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPG 188 (259)
T ss_dssp HHCCS---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred ccCCC---------------------------------------CCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
Confidence 5 211 112679999999999988765 45999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++..... .. ...... .........+..++|+|++++.++..... ...++++++.+
T Consensus 189 ~v~T~~~~~~-------~~-~~~~~~---------~~~~~p~~r~~~pedva~~v~~L~s~~~~-----~itG~~i~vdG 246 (259)
T 3edm_A 189 MISTTFHDTF-------TK-PEVRER---------VAGATSLKREGSSEDVAGLVAFLASDDAA-----YVTGACYDING 246 (259)
T ss_dssp CBCC---------------------------------------CCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESB
T ss_pred CCcCcccccc-------cC-hHHHHH---------HHhcCCCCCCcCHHHHHHHHHHHcCcccc-----CccCCEEEECC
Confidence 9876532211 00 000000 01112223467899999999988765432 23588999988
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 247 g 247 (259)
T 3edm_A 247 G 247 (259)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-16 Score=148.00 Aligned_cols=200 Identities=16% Similarity=0.166 Sum_probs=138.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+|+||||+|+||++++++|++.|+ +|+++.|+...... ...++. |++ +.
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~---~V~~~~r~~~~~~~------------------~~~~~~~D~~------~~ 54 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGY---TVLNIDLSANDQAD------------------SNILVDGNKN------WT 54 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCCTTSS------------------EEEECCTTSC------HH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEecCcccccc------------------ccEEEeCCCC------CH
Confidence 478999999999999999999999875 78888997643210 011122 776 45
Q ss_pred HHHHHHhc---------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccc
Q psy16252 175 DDKRLVTS---------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSN 236 (545)
Q Consensus 175 ~~~~~l~~---------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~ 236 (545)
+++..+++ ++|+|||+||... ..+.++..+++|+.|+.++++++... ..-.++|++||..+.
T Consensus 55 ~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~ 134 (236)
T 1ooe_A 55 EQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM 134 (236)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhc
Confidence 55555543 7999999999642 13456788999999999999998763 112589999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEEcc
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIFRP 309 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~Rp 309 (545)
.... ....|+.||+..+.+.+.++ .++++++++|
T Consensus 135 ~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~P 175 (236)
T 1ooe_A 135 GPTP---------------------------------------SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMP 175 (236)
T ss_dssp SCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEE
T ss_pred cCCC---------------------------------------CcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEec
Confidence 3210 11579999999999998765 2489999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|.++. ...... ......+++.+|+|++++..+..+.. ....+..+++.
T Consensus 176 g~v~t~~-----------------~~~~~~---------~~~~~~~~~~~dvA~~i~~~l~s~~~----~~~~G~~~~v~ 225 (236)
T 1ooe_A 176 VTLDTPM-----------------NRKWMP---------NADHSSWTPLSFISEHLLKWTTETSS----RPSSGALLKIT 225 (236)
T ss_dssp SCBCCHH-----------------HHHHST---------TCCGGGCBCHHHHHHHHHHHHHCGGG----CCCTTCEEEEE
T ss_pred CcccCcc-----------------hhhcCC---------CccccccCCHHHHHHHHHHHHcCCCc----ccccccEEEEe
Confidence 9986641 111100 01123567889999999866533322 11247788887
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 226 gg 227 (236)
T 1ooe_A 226 TE 227 (236)
T ss_dssp EE
T ss_pred cC
Confidence 65
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=155.69 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=148.5
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
.+++|+++||||+|+||+++++.|++.|. +|++..|+.. ++......+.. .......++. |++
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~------~~~~~~~~~~~-~~~~~~~~~~~Dv~------ 87 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC---HTVIASRSLP------RVLTAARKLAG-ATGRRCLPLSMDVR------ 87 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESCHH------HHHHHHHHHHH-HHSSCEEEEECCTT------
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHH-hcCCcEEEEEcCCC------
Confidence 36789999999999999999999999875 6888888632 22221111100 0011233344 888
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+..++|++||..+
T Consensus 88 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~ 167 (277)
T 4fc7_A 88 APPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLG 167 (277)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhh
Confidence 5666666654 7899999999542 23567888999999999999987531 13469999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..+.+.+.++ .++++..++||
T Consensus 168 ~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG 208 (277)
T 4fc7_A 168 NRGQ---------------------------------------ALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPG 208 (277)
T ss_dssp HHTC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred CCCC---------------------------------------CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEEC
Confidence 5321 112679999999999988765 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++... ................ .....+..++|+|++++.++..... ...++++++.+
T Consensus 209 ~v~t~~~~------~~~~~~~~~~~~~~~~---------~p~~r~~~p~dvA~~v~fL~s~~~~-----~itG~~i~vdG 268 (277)
T 4fc7_A 209 PISGTEGL------RRLGGPQASLSTKVTA---------SPLQRLGNKTEIAHSVLYLASPLAS-----YVTGAVLVADG 268 (277)
T ss_dssp CBSSSHHH------HHHSCCHHHHHHHHHT---------STTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred CEecchhh------hhccCCHHHHHHHhcc---------CCCCCCcCHHHHHHHHHHHcCCccC-----CcCCCEEEECC
Confidence 99764110 0000011111111111 1122467899999999998865432 23588999887
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 269 G 269 (277)
T 4fc7_A 269 G 269 (277)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=152.57 Aligned_cols=217 Identities=13% Similarity=0.071 Sum_probs=148.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|. +|++..|+... .+.+.. .+... ...++. |++
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~---~~~~~~-------~~~~~~~~~~~~~~Dl~----- 91 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGA---QVAVAARHSDA---LQVVAD-------EIAGVGGKALPIRCDVT----- 91 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSGGG---GHHHHH-------HHHHTTCCCEEEECCTT-----
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHHH---HHHHHH-------HHHhcCCeEEEEEcCCC-----
Confidence 5689999999999999999999999875 68888886432 122211 11111 233344 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|++|||||.... .+.++..+++|+.|+.++++++... +.-.++|++||.
T Consensus 92 -d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~ 170 (276)
T 3r1i_A 92 -QPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASM 170 (276)
T ss_dssp -CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECch
Confidence 6667776665 78999999997542 3567788899999999999887652 123689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
+......+ .....|+.||+..+.+.+.++ .++++..++
T Consensus 171 ~~~~~~~~-------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~ 213 (276)
T 3r1i_A 171 SGHIINIP-------------------------------------QQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVS 213 (276)
T ss_dssp GGTSCCCS-------------------------------------SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HhcccCCC-------------------------------------CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEe
Confidence 76532100 011579999999999988765 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++.....+ ......... .....+..++|+|++++.++..... ...++++++
T Consensus 214 PG~v~T~~~~~~~----------~~~~~~~~~---------~p~~r~~~pedvA~~v~fL~s~~~~-----~itG~~i~v 269 (276)
T 3r1i_A 214 PGYIRTELVEPLA----------DYHALWEPK---------IPLGRMGRPEELTGLYLYLASAASS-----YMTGSDIVI 269 (276)
T ss_dssp ECCBCSTTTGGGG----------GGHHHHGGG---------STTSSCBCGGGSHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eCCCcCCccccch----------HHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCcccc-----CccCcEEEE
Confidence 9999775322110 111111111 1112367899999999988765432 235789988
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 270 dGG 272 (276)
T 3r1i_A 270 DGG 272 (276)
T ss_dssp STT
T ss_pred CcC
Confidence 776
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-16 Score=147.45 Aligned_cols=188 Identities=15% Similarity=0.068 Sum_probs=125.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++..... .+. ...++. |++ +.+
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~--~~~~~~~D~~------~~~ 63 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGY---RVGLMARDEK------RLQALAA----ELE--GALPLPGDVR------EEG 63 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HST--TCEEEECCTT------CHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHH----Hhh--hceEEEecCC------CHH
Confidence 58899999999999999999999875 6888888631 2222111 111 233333 887 556
Q ss_pred HHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEeccccccC
Q psy16252 176 DKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 176 ~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~v~~~ 238 (545)
++.++++ ++|+|||+||... ..+.++..+++|+.|+.++++.+.. ..+.++||++||..++..
T Consensus 64 ~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~ 143 (234)
T 2ehd_A 64 DWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNP 143 (234)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCC
Confidence 6665554 7899999999643 2355778899999999877665532 125789999999876532
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.||+..|.+.+.++ .+++++++|||.|.
T Consensus 144 ~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~ 184 (234)
T 2ehd_A 144 F---------------------------------------KGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVD 184 (234)
T ss_dssp C---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC---
T ss_pred C---------------------------------------CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCc
Confidence 1 111679999998888876654 68999999999886
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
++.... . . .. ..++.++|+|++++.++..+.
T Consensus 185 t~~~~~-------~-----------~---~~--------~~~~~~~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 185 TGFAGN-------T-----------P---GQ--------AWKLKPEDVAQAVLFALEMPG 215 (234)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHSCC
T ss_pred CCcccc-------c-----------c---cc--------cCCCCHHHHHHHHHHHhCCCc
Confidence 542100 0 0 00 015789999999999887654
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=148.91 Aligned_cols=219 Identities=13% Similarity=0.050 Sum_probs=147.6
Q ss_pred hcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+ |+||+++++.|++.|+ +|+++.|+.. ..+.++++.. .. ....++. |++
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~---~V~~~~r~~~---~~~~~~~l~~----~~--~~~~~~~~D~~----- 66 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA---TLAFTYLNES---LEKRVRPIAQ----EL--NSPYVYELDVS----- 66 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTC---EEEEEESSTT---THHHHHHHHH----HT--TCCCEEECCTT-----
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH---HHHHHHHHHH----hc--CCcEEEEcCCC-----
Confidence 457999999999 9999999999999875 6888888753 1222222111 11 1233444 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|++||
T Consensus 67 -~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 145 (275)
T 2pd4_A 67 -KEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY 145 (275)
T ss_dssp -CHHHHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 5666666654 68999999997532 2456788999999999999999764 11258999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..+.... .....|+.||+..+.+.+.++ .+++++++
T Consensus 146 ~~~~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v 186 (275)
T 2pd4_A 146 LGSTKYM---------------------------------------AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNAL 186 (275)
T ss_dssp GGGTSBC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred chhcCCC---------------------------------------CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEE
Confidence 8664321 111579999999999988765 58999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
+||.|.++..... .............. ....+..++|+|++++.++..... ...+.+++
T Consensus 187 ~PG~v~T~~~~~~-------~~~~~~~~~~~~~~---------p~~~~~~p~dva~~~~~l~s~~~~-----~~tG~~~~ 245 (275)
T 2pd4_A 187 SAGPIRTLASSGI-------ADFRMILKWNEINA---------PLRKNVSLEEVGNAGMYLLSSLSS-----GVSGEVHF 245 (275)
T ss_dssp EECCCCCTTGGGS-------TTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred eeCccccchhhhc-------cccHHHHHHHHhcC---------CcCCCCCHHHHHHHHHHHhCcccc-----CCCCCEEE
Confidence 9999987632211 11111211111100 011356889999999988864332 12477888
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 246 vdgg 249 (275)
T 2pd4_A 246 VDAG 249 (275)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8775
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=152.45 Aligned_cols=233 Identities=10% Similarity=0.075 Sum_probs=147.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||++++++|++.|+ +|++..|+.. ++.+....+-..........+. |++ +
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~------~~~~~~~~l~~~~~~~~~~~~~~D~~------~ 72 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGA---NVLINGRREE------NVNETIKEIRAQYPDAILQPVVADLG------T 72 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSHH------HHHHHHHHHHHHCTTCEEEEEECCTT------S
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHhhCCCceEEEEecCCC------C
Confidence 4689999999999999999999999975 6888888632 2222211111100011122233 887 5
Q ss_pred HHHHHHHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCC
Q psy16252 174 PDDKRLVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 174 ~~~~~~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~ 240 (545)
.+.+.++++ ++|++|||||.... .+.++..+++|+.|+.++++.+... .+..++|++||..+....
T Consensus 73 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 151 (267)
T 3t4x_A 73 EQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPS- 151 (267)
T ss_dssp HHHHHHHHHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCC-
Confidence 566666655 78999999997532 3567788999999988887766441 245799999999765321
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
.....|+.||+..+.+.+.++ .++++..++||.|.++
T Consensus 152 --------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (267)
T 3t4x_A 152 --------------------------------------QEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTE 193 (267)
T ss_dssp --------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCH
T ss_pred --------------------------------------CcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCc
Confidence 112689999999999998765 5799999999998765
Q ss_pred CCCCCC-CCc-cCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 316 WKEPIP-GWI-DNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 316 ~~~~~~-g~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
...... ... .................. .......+..++|||++++.++..... ...++++++.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~r~~~pedvA~~v~fL~s~~~~-----~itG~~i~vdGG 261 (267)
T 3t4x_A 194 GVETMLNSLYPNEQLTIEEAEKRFMKENR-----PTSIIQRLIRPEEIAHLVTFLSSPLSS-----AINGSALRIDGG 261 (267)
T ss_dssp HHHHHHHHSSTTSCCCHHHHHHHHHHHHC-----TTCSSCSCBCTHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred cHHHHHhhcCcccCCCHHHHHHHHhhccC-----CcccccCccCHHHHHHHHHHHcCcccc-----CccCCeEEECCC
Confidence 210000 000 000000111111111000 011234578999999999988765332 235889999887
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-16 Score=149.44 Aligned_cols=218 Identities=11% Similarity=0.006 Sum_probs=149.3
Q ss_pred hcCcEEEEeccccc--cchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGF--LGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGf--lG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+ ||.+++++|++.|+ +|+++.|.. ..+.++.+... . ....++. |++
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~---~V~~~~r~~----~~~~~~~l~~~----~--~~~~~~~~Dl~----- 85 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREGA---ELAFTYVGQ----FKDRVEKLCAE----F--NPAAVLPCDVI----- 85 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTTC---EEEEEECTT----CHHHHHHHHGG----G--CCSEEEECCTT-----
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcCC---EEEEeeCch----HHHHHHHHHHh----c--CCceEEEeecC-----
Confidence 56899999999977 99999999999875 688888875 12222222111 0 1233344 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc------------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEE
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR------------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYV 230 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~------------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~v 230 (545)
+.+++..+++ .+|+||||||... ..+.++..+++|+.++.++++++... .+..++|++
T Consensus 86 -~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~i 164 (280)
T 3nrc_A 86 -SDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVAL 164 (280)
T ss_dssp -CHHHHHHHHHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEE
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 5666666654 5799999999753 23456778999999999999988763 134689999
Q ss_pred eccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 231 STAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 231 SS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
||..+.... .....|+.||+..+.+.+.++ .++++.
T Consensus 165 sS~~~~~~~---------------------------------------~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~ 205 (280)
T 3nrc_A 165 TYIGAEKAM---------------------------------------PSYNTMGVAKASLEATVRYTALALGEDGIKVN 205 (280)
T ss_dssp ECGGGTSCC---------------------------------------TTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred eccccccCC---------------------------------------CCchhhHHHHHHHHHHHHHHHHHHHHcCcEEE
Confidence 998765321 112689999999999987664 689999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
+++||.|.++..... ............. .....+..++|+|++++.++..... ...+++
T Consensus 206 ~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~---------~p~~~~~~pedvA~~v~~l~s~~~~-----~~tG~~ 264 (280)
T 3nrc_A 206 AVSAGPIKTLAASGI-------SNFKKMLDYNAMV---------SPLKKNVDIMEVGNTVAFLCSDMAT-----GITGEV 264 (280)
T ss_dssp EEEECCCCCSGGGGC-------TTHHHHHHHHHHH---------STTCSCCCHHHHHHHHHHTTSGGGT-----TCCSCE
T ss_pred EEeeccccchhhhcC-------cchHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCcccC-----CcCCcE
Confidence 999999987643221 1111222221111 1112367889999999998875432 135789
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
+++.++
T Consensus 265 i~vdgG 270 (280)
T 3nrc_A 265 VHVDAG 270 (280)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999876
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=8.4e-16 Score=148.68 Aligned_cols=221 Identities=12% Similarity=0.061 Sum_probs=145.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||+++++.|++.|+ +|+++.|+.. ++......+.... .....++. |++ +
T Consensus 19 l~~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~~l~~~~-~~~~~~~~~Dl~------~ 82 (267)
T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQGLAEAGC---SVVVASRNLE------EASEAAQKLTEKY-GVETMAFRCDVS------N 82 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHHHHH-CCCEEEEECCTT------C
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHHhc-CCeEEEEEcCCC------C
Confidence 5689999999999999999999999875 6888888632 2222111110000 11222333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEeccc-c
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAF-S 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~-v 235 (545)
.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++.. ..+..++|++||.. .
T Consensus 83 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~ 162 (267)
T 1vl8_A 83 YEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVE 162 (267)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchh
Confidence 666666654 78999999997532 245678899999999999988754 12467999999987 3
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..|.+.+.++ .++++++++||
T Consensus 163 ~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG 203 (267)
T 1vl8_A 163 EVTM---------------------------------------PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPG 203 (267)
T ss_dssp CCCS---------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEC
T ss_pred ccCC---------------------------------------CCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEec
Confidence 2110 011679999999999988764 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++.... ............... ....++.++|+|++++.++..... ...++++.+.+
T Consensus 204 ~v~T~~~~~-------~~~~~~~~~~~~~~~---------p~~~~~~p~dvA~~v~~l~s~~~~-----~itG~~i~vdG 262 (267)
T 1vl8_A 204 WYRTKMTEA-------VFSDPEKLDYMLKRI---------PLGRTGVPEDLKGVAVFLASEEAK-----YVTGQIIFVDG 262 (267)
T ss_dssp CBCSTTTHH-------HHTCHHHHHHHHHTC---------TTSSCBCGGGGHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred cCccccccc-------cccChHHHHHHHhhC---------CCCCCcCHHHHHHHHHHHcCcccc-----CCcCCeEEECC
Confidence 986642110 000011111111110 112478899999999988765432 12478888876
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 263 G 263 (267)
T 1vl8_A 263 G 263 (267)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=150.50 Aligned_cols=216 Identities=13% Similarity=0.103 Sum_probs=145.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||+++++.|++.|. +|++..|+. ++++..... + .....++. |++ +
T Consensus 4 l~gk~vlVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~------~~~~~~~~~----~-~~~~~~~~~Dv~------~ 63 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAARLAADGA---TVIVSDINA------EGAKAAAAS----I-GKKARAIAADIS------D 63 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCH------HHHHHHHHH----H-CTTEEECCCCTT------C
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHHH----h-CCceEEEEcCCC------C
Confidence 5689999999999999999999999975 688887763 222221111 1 11233344 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v 235 (545)
.++++.+++ ++|++|||||.... .+.++..+++|+.|+.++++++. +.+...++|++||...
T Consensus 64 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 143 (247)
T 3rwb_A 64 PGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTF 143 (247)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHH
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhh
Confidence 666766665 78999999997532 35678889999999999988743 3323579999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..+.+.+.++ .++++..++||
T Consensus 144 ~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG 184 (247)
T 3rwb_A 144 FAGT---------------------------------------PNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPG 184 (247)
T ss_dssp HHTC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ccCC---------------------------------------CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeC
Confidence 4321 112689999998888887665 68999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++.....+ ... ...+... . .....+...+|+|++++.++..... ...++++++.+
T Consensus 185 ~v~t~~~~~~~---~~~--~~~~~~~-~-----------~~~~r~~~pedva~~v~~L~s~~~~-----~itG~~i~vdG 242 (247)
T 3rwb_A 185 LIESDGVKASP---HNE--AFGFVEM-L-----------QAMKGKGQPEHIADVVSFLASDDAR-----WITGQTLNVDA 242 (247)
T ss_dssp SBCCHHHHTSG---GGG--GHHHHHH-H-----------SSSCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred cCcCccccccC---hhH--HHHHHhc-c-----------cccCCCcCHHHHHHHHHHHhCcccc-----CCCCCEEEECC
Confidence 99775321110 000 0111111 0 0112356789999999988765432 23478888877
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 243 G 243 (247)
T 3rwb_A 243 G 243 (247)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=151.42 Aligned_cols=211 Identities=10% Similarity=0.002 Sum_probs=140.8
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLS 173 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~ 173 (545)
-+++|+|+||||+|+||++++++|++.|+ +|+++.|+. +.+... . ...++.|+ .. +
T Consensus 16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~------~~~~~~-~---------~~~~~~D~-~~----~ 71 (249)
T 1o5i_A 16 GIRDKGVLVLAASRGIGRAVADVLSQEGA---EVTICARNE------ELLKRS-G---------HRYVVCDL-RK----D 71 (249)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHT-C---------SEEEECCT-TT----C
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCH------HHHHhh-C---------CeEEEeeH-HH----H
Confidence 36789999999999999999999999875 688888864 111110 0 00000166 11 3
Q ss_pred HHHHHHHhcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHH----HHccCCceEEEEeccccccCCCcc
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLA----KQCKNLKMFTYVSTAFSNSYRKNI 242 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~~~~v~vSS~~v~~~~~~i 242 (545)
.+.+.+.+.++|+|||+||.... .+.++..+++|+.|+.++++.+ ++. +..++|++||..++....
T Consensus 72 ~~~~~~~~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~-- 148 (249)
T 1o5i_A 72 LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAITSFSVISPIE-- 148 (249)
T ss_dssp HHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCT--
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcchHhcCCCC--
Confidence 34444444489999999996432 3557788999999987776554 343 568999999998764311
Q ss_pred cccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCC
Q psy16252 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 243 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~ 317 (545)
....|+.||+..+.+.+..+ .+++++++|||.|.++..
T Consensus 149 -------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 191 (249)
T 1o5i_A 149 -------------------------------------NLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERV 191 (249)
T ss_dssp -------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTH
T ss_pred -------------------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcc
Confidence 11579999999998887764 589999999999987631
Q ss_pred CCCCCCccCccchHHHHH-HHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 318 EPIPGWIDNLYGPTGLVT-GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.. .. ..... ..... .....+++++|+|++++.++..... ...+++|++.++
T Consensus 192 ~~-------~~--~~~~~~~~~~~---------~p~~~~~~~~dvA~~i~~l~s~~~~-----~~tG~~~~vdgG 243 (249)
T 1o5i_A 192 KE-------LL--SEEKKKQVESQ---------IPMRRMAKPEEIASVVAFLCSEKAS-----YLTGQTIVVDGG 243 (249)
T ss_dssp HH-------HS--CHHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred cc-------cc--hhhHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCcccc-----CCCCCEEEECCC
Confidence 10 00 01111 11111 1123478999999999988765432 124789998876
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-16 Score=151.71 Aligned_cols=218 Identities=12% Similarity=0.060 Sum_probs=144.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc-CCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT-CSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~-Dl~~~~lgl 172 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++..... .+... ...++. |++
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~Dv~------ 87 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGA---RVFICARDAE------ACADTAT----RLSAYGDCQAIPADLS------ 87 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCHH------HHHHHHH----HHTTSSCEEECCCCTT------
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCceEEEEeeCC------
Confidence 4689999999999999999999999875 6888888632 2222111 11111 223334 887
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCC----ceEEEEe
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNL----KMFTYVS 231 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~----~~~v~vS 231 (545)
+.++++.+++ ++|+||||||.... .+.++..+++|+.|+.++++++... .+. .++|++|
T Consensus 88 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~is 167 (276)
T 2b4q_A 88 SEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIG 167 (276)
T ss_dssp SHHHHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 5666666654 78999999996532 3567889999999998888876531 133 7999999
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCc-hHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMN-TYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
|..++.... ... .|+.||+..|.+.+.++ .+++++
T Consensus 168 S~~~~~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn 208 (276)
T 2b4q_A 168 SVAGISAMG---------------------------------------EQAYAYGPSKAALHQLSRMLAKELVGEHINVN 208 (276)
T ss_dssp CGGGTCCCC---------------------------------------CSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred CHHHcCCCC---------------------------------------CCccccHHHHHHHHHHHHHHHHHhcccCeEEE
Confidence 997653211 113 79999999999988765 589999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
+++||.|.++.... .. .......... . ......+..++|+|++++.++..... ...+++
T Consensus 209 ~v~PG~v~T~~~~~-------~~--~~~~~~~~~~--~-----~~p~~r~~~p~dvA~~v~~l~s~~~~-----~~tG~~ 267 (276)
T 2b4q_A 209 VIAPGRFPSRMTRH-------IA--NDPQALEADS--A-----SIPMGRWGRPEEMAALAISLAGTAGA-----YMTGNV 267 (276)
T ss_dssp EEEECCCCSTTTHH-------HH--HCHHHHHHHH--H-----TSTTSSCCCHHHHHHHHHHHHSGGGT-----TCCSCE
T ss_pred EEEeccCcCcchhh-------cc--hhHHHHHHhh--c-----CCCCCCcCCHHHHHHHHHHHhCcccc-----CCCCCE
Confidence 99999987652110 00 0000111100 0 00112478999999999998865432 124788
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
+++.++
T Consensus 268 i~vdGG 273 (276)
T 2b4q_A 268 IPIDGG 273 (276)
T ss_dssp EEESTT
T ss_pred EEeCCC
Confidence 888765
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=152.12 Aligned_cols=221 Identities=13% Similarity=0.048 Sum_probs=146.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+||||||+|+||+++++.|++.|. +|++..|+.. +++.....+-. .......++. |++++
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~------~~~~~~~~l~~-~~~~~~~~~~~Dv~~~----- 82 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGA---RLVLSGRDVS------ELDAARRALGE-QFGTDVHTVAIDLAEP----- 82 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHHH-HHCCCEEEEECCTTST-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHHHHH-hcCCcEEEEEecCCCH-----
Confidence 5689999999999999999999999975 6888888632 22221111100 0112233444 88854
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v 235 (545)
++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... +.-.++|++||..+
T Consensus 83 -~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~ 161 (266)
T 4egf_A 83 -DAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAA 161 (266)
T ss_dssp -THHHHHHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred -HHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhh
Confidence 34444443 7999999999753 13557888999999999999887542 12468999999976
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..+.+.+.++ .++++..++||
T Consensus 162 ~~~~---------------------------------------~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG 202 (266)
T 4egf_A 162 LAPL---------------------------------------PDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPT 202 (266)
T ss_dssp TSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEES
T ss_pred ccCC---------------------------------------CCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeC
Confidence 5321 112679999999999887765 58999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|.++.... .............. .....+..++|+|++++.++..... ...++++++.+
T Consensus 203 ~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~r~~~p~dva~~v~~L~s~~~~-----~itG~~i~vdG 261 (266)
T 4egf_A 203 VVLTEMGQR-------VWGDEAKSAPMIAR---------IPLGRFAVPHEVSDAVVWLASDAAS-----MINGVDIPVDG 261 (266)
T ss_dssp CBCSHHHHH-------HTCSHHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred CCcCchhhh-------hccChHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhc-----CccCcEEEECC
Confidence 997752111 00001111111111 1123467899999999988765432 23578999887
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 262 G 262 (266)
T 4egf_A 262 G 262 (266)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=152.09 Aligned_cols=202 Identities=14% Similarity=0.122 Sum_probs=138.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|+|+||||+|+||+++++.|++.|+ +|+++.|+. ++++. +......++. |++ +
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~------~~~~~--------~~~~~~~~~~~Dv~------d 70 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGH---PLLLLARRV------ERLKA--------LNLPNTLCAQVDVT------D 70 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCH------HHHHT--------TCCTTEEEEECCTT------C
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHH--------hhcCCceEEEecCC------C
Confidence 4579999999999999999999999976 578888862 22221 1111222333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~v~ 236 (545)
.+++..+++ ++|++|||||... ..+.++..+++|+.|+.++++++.. ..+..++|++||..+.
T Consensus 71 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~ 150 (266)
T 3p19_A 71 KYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGK 150 (266)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhC
Confidence 666666655 7899999999753 2356778899999999998877652 1255799999999765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+.++ .++++.+++||.
T Consensus 151 ~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~ 191 (266)
T 3p19_A 151 KTF---------------------------------------PDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSA 191 (266)
T ss_dssp SCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECS
T ss_pred CCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCc
Confidence 321 112679999999998887765 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
|.++..... .. ............ ....++.++|||++++.++..+..
T Consensus 192 v~T~~~~~~-------~~-~~~~~~~~~~~~--------~~~r~~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 192 VKTELLSHT-------TS-QQIKDGYDAWRV--------DMGGVLAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp BSSSGGGGC-------SC-HHHHHHHHHHHH--------HTTCCBCHHHHHHHHHHHHHSCTT
T ss_pred cccchhhcc-------cc-hhhhHHHHhhcc--------cccCCCCHHHHHHHHHHHHcCCCC
Confidence 977532211 10 111111100000 112378899999999999877654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-16 Score=151.90 Aligned_cols=209 Identities=13% Similarity=0.121 Sum_probs=136.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++..... .+... ...++. |++
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~Dv~----- 90 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA---RLVLSDVDQP------ALEQAVN----GLRGQGFDAHGVVCDVR----- 90 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHH----HHHhcCCceEEEEccCC-----
Confidence 5689999999999999999999999975 6888888632 2222211 12211 223334 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~ 233 (545)
+.+++.++++ ++|+||||||... ..+.++..+++|+.|+.++++++.. .+...++|++||.
T Consensus 91 -d~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~ 169 (301)
T 3tjr_A 91 -HLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASF 169 (301)
T ss_dssp -CHHHHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCch
Confidence 5666666654 7899999999752 2355778899999999999998754 2224689999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+..... ....|+.||+..+.+.+.++ .|+++++++
T Consensus 170 ~~~~~~~---------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~ 210 (301)
T 3tjr_A 170 AGLVPNA---------------------------------------GLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLC 210 (301)
T ss_dssp GGTSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEC
T ss_pred hhcCCCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEE
Confidence 7653211 11679999998888887664 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHH---hcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGA---QAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
||.|.++... ........ .........+.......+++++|||++++.++...
T Consensus 211 PG~v~T~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~ 266 (301)
T 3tjr_A 211 PMVVETKLVS-----------NSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLTADAILAN 266 (301)
T ss_dssp CSCCCSSHHH-----------HHHHHC----------------------CCCHHHHHHHHHHHHHHT
T ss_pred CCcccccccc-----------ccccccchhhccccChhhhccccccccCCCCHHHHHHHHHHHHhcC
Confidence 9998664110 00000000 00000001122233456899999999999998754
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=150.62 Aligned_cols=214 Identities=13% Similarity=0.088 Sum_probs=146.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||||+||++++++|++.|+ +|+++.|+. +++++... .+. ....++. |++ +
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~---~V~~~~r~~------~~~~~~~~----~~~-~~~~~~~~D~~------~ 63 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGA---SLVAVDREE------RLLAEAVA----ALE-AEAIAVVADVS------D 63 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----TCC-SSEEEEECCTT------S
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHH----Hhc-CceEEEEcCCC------C
Confidence 4579999999999999999999999875 688888863 22222111 111 1222333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHcc-CCceEEEEeccccccC
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQCK-NLKMFTYVSTAFSNSY 238 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~~-~~~~~v~vSS~~v~~~ 238 (545)
.++++.+++ .+|+||||||.... .+.++..+++|+.|+.++++++...- +..++|++||..+++.
T Consensus 64 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~ 143 (263)
T 2a4k_A 64 PKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA 143 (263)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCC
Confidence 666666654 57999999997532 24567789999999999999987641 1358999999977621
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
.. ...|+.||+..+.+.+..+ .++++++++||.|.
T Consensus 144 ~~----------------------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~ 183 (263)
T 2a4k_A 144 FG----------------------------------------LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQ 183 (263)
T ss_dssp HH----------------------------------------HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBC
T ss_pred CC----------------------------------------cHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCc
Confidence 00 1579999998888776654 68999999999998
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
++.... . . ........... ....+.+++|+|++++.++..... ...++++++.++
T Consensus 184 t~~~~~-------~-~-~~~~~~~~~~~---------p~~~~~~p~dvA~~v~~l~s~~~~-----~~tG~~i~vdgG 238 (263)
T 2a4k_A 184 TPMTAG-------L-P-PWAWEQEVGAS---------PLGRAGRPEEVAQAALFLLSEESA-----YITGQALYVDGG 238 (263)
T ss_dssp CGGGTT-------S-C-HHHHHHHHHTS---------TTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred Cchhhh-------c-C-HHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc-----CCcCCEEEECCC
Confidence 864221 1 1 11111111111 012368899999999988765432 124788888876
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=148.68 Aligned_cols=231 Identities=13% Similarity=0.091 Sum_probs=149.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC-------CHHHHHHhhHHHHHHhhhhcC--CCccc-C
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ-------SPQQRIDKMLDTVAISLKFTC--STSKE-S 164 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~-------~~~~rl~~~~~~~~~~~~~~~--~~~~~-D 164 (545)
+++|+++||||+|+||+++++.|++.|. +|+++.|..... ...+++...... +.... ..++. |
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D 81 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEGA---DIIAVDIAGKLPSCVPYDPASPDDLSETVRL----VEAANRRIVAAVVD 81 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECCSCCCTTCCSCCCCHHHHHHHHHH----HHHTTCCEEEEECC
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcCC---EEEEEeccccccccccccccCHHHHHHHHHH----HHhcCCeEEEEECC
Confidence 5689999999999999999999999976 688888853211 112333332221 11112 22333 8
Q ss_pred CCCCCCCCCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc----cCCce
Q psy16252 165 AQAPDLGLSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC----KNLKM 226 (545)
Q Consensus 165 l~~~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~ 226 (545)
++ +.+++..+++ .+|++|||||.... .+.++..+++|+.|+.++++++... +.-.+
T Consensus 82 ~~------~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~ 155 (277)
T 3tsc_A 82 TR------DFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGS 155 (277)
T ss_dssp TT------CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEE
T ss_pred CC------CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCE
Confidence 87 5666666654 58999999997532 3567888999999999999886542 12468
Q ss_pred EEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cC
Q psy16252 227 FTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QF 301 (545)
Q Consensus 227 ~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~ 301 (545)
+|++||..+.... .....|+.||+..+.+.+.++ .+
T Consensus 156 iv~isS~~~~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~g 196 (277)
T 3tsc_A 156 IILISSAAGMKMQ---------------------------------------PFMIHYTASKHAVTGLARAFAAELGKHS 196 (277)
T ss_dssp EEEECCGGGTSCC---------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEccHhhCCCC---------------------------------------CCchhhHHHHHHHHHHHHHHHHHhCccC
Confidence 9999999765321 112679999999999988765 58
Q ss_pred CCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcC-ceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCC
Q psy16252 302 FPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAG-VVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDP 380 (545)
Q Consensus 302 l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~ 380 (545)
+++..++||.|.++.... ............. ....... .....-+..++|+|++++.++..... .
T Consensus 197 i~vn~v~PG~v~T~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~p~r~~~pedvA~~v~~L~s~~~~-----~ 262 (277)
T 3tsc_A 197 IRVNSVHPGPVNTPMGSG--------DMVTAVGQAMETNPQLSHVLT-PFLPDWVAEPEDIADTVCWLASDESR-----K 262 (277)
T ss_dssp EEEEEEEESSBSSGGGSH--------HHHHHHHHHHHTCGGGTTTTC-CSSSCSCBCHHHHHHHHHHHHSGGGT-----T
T ss_pred eEEEEEEeCCCcCCcccc--------hhhhhhhhcccccHHHHHHhh-hccCCCCCCHHHHHHHHHHHhCcccc-----C
Confidence 999999999997753110 0000111110000 0000000 11112478999999999998865432 2
Q ss_pred CCCCEEEeecC
Q psy16252 381 SCLPIYNYVNS 391 (545)
Q Consensus 381 ~~~~vy~i~~~ 391 (545)
..+.++++.++
T Consensus 263 itG~~i~vdGG 273 (277)
T 3tsc_A 263 VTAAQIPVDQG 273 (277)
T ss_dssp CCSCEEEESTT
T ss_pred CcCCEEeeCCC
Confidence 35789988876
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=148.83 Aligned_cols=224 Identities=14% Similarity=0.040 Sum_probs=146.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|. +|+++.|+. +++++.. ..+.... ..++. |++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~------~~~~~~~----~~l~~~~~~~~~~~~Dv~----- 87 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGV---TVGALGRTR------TEVEEVA----DEIVGAGGQAIALEADVS----- 87 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESSH------HHHHHHH----HHHTTTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHH----HHHHhcCCcEEEEEccCC-----
Confidence 4579999999999999999999999975 688888863 2222211 1122222 22333 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEec
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS 232 (545)
+.+++..+++ ++|++||+||.... .+.++..+++|+.|+.++++++. +. +..++|++||
T Consensus 88 -d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS 165 (283)
T 3v8b_A 88 -DELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVSS 165 (283)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCceEEEEcC
Confidence 5666666654 78999999997421 35678889999999999999883 33 5579999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..+..... ......|+.||+..+.+.+.++ .++++.++
T Consensus 166 ~~~~~~~~-------------------------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v 208 (283)
T 3v8b_A 166 INGTRTFT-------------------------------------TPGATAYTATKAAQVAIVQQLALELGKHHIRVNAV 208 (283)
T ss_dssp SBTTTBCC-------------------------------------STTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred hhhccCCC-------------------------------------CCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEE
Confidence 87643110 0112679999999999988765 57999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCc--ccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVK--ADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
+||.|..+...... ...... .............. -.+..++|||++++.++..... ...+++
T Consensus 209 ~PG~v~T~~~~~~~------~~~~~~-----~~~~~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~~a~-----~itG~~ 272 (283)
T 3v8b_A 209 CPGAIETNISDNTK------LRHEEE-----TAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERAR-----HVTGSP 272 (283)
T ss_dssp EECSBSSCTTCCTT------BCCHHH-----HSCCCBCTTCSCGGGTTCCBCHHHHHHHHHHHTSGGGT-----TCCSCE
T ss_pred EeCCCcCCcccccc------cccchh-----hhhhhhhhhhcCccccCCCCCHHHHHHHHHHHcCcccc-----CCcCCE
Confidence 99999775332110 000000 00000000010111 2457789999999988765432 234788
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
+++.++
T Consensus 273 i~vdGG 278 (283)
T 3v8b_A 273 VWIDGG 278 (283)
T ss_dssp EEESTT
T ss_pred EEECcC
Confidence 888775
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=150.80 Aligned_cols=203 Identities=10% Similarity=0.057 Sum_probs=131.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|+.... +.+.. .++.. ...++. |++
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~~~---~~~~~-------~~~~~~~~~~~~~~Dv~----- 66 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF---TVFAGRRNGEKL---APLVA-------EIEAAGGRIVARSLDAR----- 66 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC---EEEEEESSGGGG---HHHHH-------HHHHTTCEEEEEECCTT-----
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHH---HHHHH-------HHHhcCCeEEEEECcCC-----
Confidence 4579999999999999999999999975 688888864321 11111 11111 223344 888
Q ss_pred CCHHHHHHHhc------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 172 LSPDDKRLVTS------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 172 l~~~~~~~l~~------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+.+++..+++ ++|++|||||.... .+.++..+++|+.|+.++++++... .+..++|++||..+
T Consensus 67 -~~~~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~ 145 (252)
T 3h7a_A 67 -NEDEVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATAS 145 (252)
T ss_dssp -CHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGG
T ss_pred -CHHHHHHHHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 6677777665 68999999997532 3567888999999999998877431 24569999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCE-EEEcc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPV-CIFRP 309 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~-~i~Rp 309 (545)
.... .....|+.||+..+.+.+.++ .++++ .++.|
T Consensus 146 ~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~P 186 (252)
T 3h7a_A 146 LRGG---------------------------------------SGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIID 186 (252)
T ss_dssp TCCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred cCCC---------------------------------------CCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecC
Confidence 5321 112679999999998887765 57999 89999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
|.|..+..... . ...... ..... ...+..++|+|++++.++..+..
T Consensus 187 G~v~T~~~~~~-------~--~~~~~~---------~~~~~-~~~~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 187 SGVDTAWVRER-------R--EQMFGK---------DALAN-PDLLMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHCCGG
T ss_pred CccCChhhhcc-------c--hhhhhh---------hhhcC-CccCCCHHHHHHHHHHHHhCchh
Confidence 99866522110 0 000000 00111 12288999999999999876554
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-16 Score=150.55 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=145.2
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~l 170 (545)
.+++|+++||||+|+||++++++|++.|. +|+++.|... +.+..... .+.. ....++. |++
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~Dl~---- 85 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGM---AVAVSHSERN-----DHVSTWLM----HERDAGRDFKAYAVDVA---- 85 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEECSCH-----HHHHHHHH----HHHTTTCCCEEEECCTT----
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCch-----HHHHHHHH----HHHhcCCceEEEEecCC----
Confidence 46789999999999999999999999875 6777765431 11221111 1111 2233444 888
Q ss_pred CCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++.+... .+..++|++||.
T Consensus 86 --~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~ 163 (269)
T 3gk3_A 86 --DFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSV 163 (269)
T ss_dssp --CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred --CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 5666666654 7899999999753 23567888999999999999887541 245799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..+.+.+.++ .++++.+++
T Consensus 164 ~~~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~ 204 (269)
T 3gk3_A 164 NGSRGA---------------------------------------FGQANYASAKAGIHGFTKTLALETAKRGITVNTVS 204 (269)
T ss_dssp HHHHCC---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhccCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEe
Confidence 664321 111679999998888887654 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++.....+. ... ... .........+..++|+|++++.++..... ...++++++
T Consensus 205 PG~v~T~~~~~~~~---------~~~----~~~----~~~~~~~~~~~~p~dvA~~v~~L~s~~~~-----~itG~~i~v 262 (269)
T 3gk3_A 205 PGYLATAMVEAVPQ---------DVL----EAK----ILPQIPVGRLGRPDEVAALIAFLCSDDAG-----FVTGADLAI 262 (269)
T ss_dssp ECSBCCTTTTC--------------------CC----SGGGCTTSSCBCHHHHHHHHHHHTSTTCT-----TCCSCEEEE
T ss_pred cCcccchhhhhhch---------hHH----HHH----hhhcCCcCCccCHHHHHHHHHHHhCCCcC-----CeeCcEEEE
Confidence 99997753221110 000 000 01111223467899999999988765432 235889999
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 263 dgG 265 (269)
T 3gk3_A 263 NGG 265 (269)
T ss_dssp STT
T ss_pred CCC
Confidence 887
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=146.77 Aligned_cols=217 Identities=9% Similarity=0.069 Sum_probs=146.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|... ++++.... .++.. ...++. |++
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~~~-----~~~~~~~~----~l~~~~~~~~~~~~Dv~----- 91 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGA---AVALTYVNAA-----ERAQAVVS----EIEQAGGRAVAIRADNR----- 91 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCH-----HHHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCCH-----HHHHHHHH----HHHhcCCcEEEEECCCC-----
Confidence 4689999999999999999999999975 5777656431 22222111 12211 222333 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSN 236 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~ 236 (545)
+.++++.+++ ++|++||+||... ..+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 92 -d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~ 170 (271)
T 3v2g_A 92 -DAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAE 170 (271)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGT
T ss_pred -CHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhc
Confidence 6666766665 7899999999753 23567888999999999999998763 234689999997543
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... .....|+.||+..+.+.+.++ .++++.+++||.
T Consensus 171 ~~~~--------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~ 212 (271)
T 3v2g_A 171 LVPW--------------------------------------PGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGS 212 (271)
T ss_dssp CCCS--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECS
T ss_pred cCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCC
Confidence 2100 112679999999999887765 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.++.....+. . .... .... ....+..++|+|++++.++..... ...++++++.++
T Consensus 213 v~T~~~~~~~~----~--~~~~----~~~~---------~~~r~~~pedvA~~v~fL~s~~~~-----~itG~~i~vdGG 268 (271)
T 3v2g_A 213 TDTDMNPADGD----H--AEAQ----RERI---------ATGSYGEPQDIAGLVAWLAGPQGK-----FVTGASLTIDGG 268 (271)
T ss_dssp BCSSSSCSSCS----S--HHHH----HHTC---------TTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred CcCCcccccch----h--HHHH----HhcC---------CCCCCCCHHHHHHHHHHHhCcccC-----CccCCEEEeCcC
Confidence 98764322110 0 0111 1111 112357899999999988764332 235788888775
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-16 Score=150.42 Aligned_cols=229 Identities=14% Similarity=0.050 Sum_probs=147.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||+++++.|++.|+ +|+++.|+... ..+.... .+... ...++. |++
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~-----~~~~~~~----~~~~~~~~~~~~~~D~~----- 89 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRGC---KVIVNYANSTE-----SAEEVVA----AIKKNGSDAACVKANVG----- 89 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCHH-----HHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCchH-----HHHHHHH----HHHHhCCCeEEEEcCCC-----
Confidence 5689999999999999999999999875 68888886421 1111111 11111 222333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSN 236 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~ 236 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 90 -~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~ 168 (283)
T 1g0o_A 90 -VVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ 168 (283)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhc
Confidence 5555555543 68999999997532 3567888999999999999998874 245799999998764
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... .....|+.||+..|.+.+.++ .++++++++||.
T Consensus 169 ~~~~--------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~ 210 (283)
T 1g0o_A 169 AKAV--------------------------------------PKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGG 210 (283)
T ss_dssp CSSC--------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECC
T ss_pred cCCC--------------------------------------CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCc
Confidence 3210 012679999999999987764 589999999999
Q ss_pred eeccCCCCC-CCCccCc-cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 312 VISTWKEPI-PGWIDNL-YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 312 i~g~~~~~~-~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.++..... ..+.... .............. ......+..++|+|++++.++..... ...+.++++.
T Consensus 211 v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~p~~r~~~p~dvA~~v~~l~s~~~~-----~itG~~i~vd 278 (283)
T 1g0o_A 211 IKTDMYHAVCREYIPNGENLSNEEVDEYAAVQ-------WSPLRRVGLPIDIARVVCFLASNDGG-----WVTGKVIGID 278 (283)
T ss_dssp BSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHH-------SCTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred ccchhhhhhhhhccccccccCHHHHHHHHhhc-------CCCCCCCcCHHHHHHHHHHHhCcccc-----CcCCCEEEeC
Confidence 977521100 0000000 00011111111100 01112367899999999998865432 1247888887
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 279 gG 280 (283)
T 1g0o_A 279 GG 280 (283)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-16 Score=149.39 Aligned_cols=221 Identities=9% Similarity=0.017 Sum_probs=149.3
Q ss_pred hcCcEEEEeccccc--cchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGF--LGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGf--lG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+ ||.+++++|++.|. +|+++.|+... .+.+.+... ........++. |++
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~---~V~~~~r~~~~---~~~~~~~~~----~~~~~~~~~~~~D~~----- 69 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA---RLIFTYAGERL---EKSVHELAG----TLDRNDSIILPCDVT----- 69 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC---EEEEEESSGGG---HHHHHHHHH----TSSSCCCEEEECCCS-----
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC---EEEEecCchHH---HHHHHHHHH----hcCCCCceEEeCCCC-----
Confidence 46899999999998 99999999999975 68888886421 222222111 11111334444 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-----------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-----------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
+.++++++++ .+|++||+||... ..+.+...+++|+.|+.++++++... .+-.++|++||
T Consensus 70 -~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 70 -NDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp -SSHHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred -CHHHHHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 4455555544 6899999999753 12456778899999999999998763 12358999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..+.... .....|+.||+..+.+.+.++ .++++.++
T Consensus 149 ~~~~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v 189 (266)
T 3oig_A 149 LGGELVM---------------------------------------PNYNVMGVAKASLDASVKYLAADLGKENIRVNSI 189 (266)
T ss_dssp GGGTSCC---------------------------------------TTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred ccccccC---------------------------------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEE
Confidence 8765321 112679999999999887765 58999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
+||.|.++.....+ ............. ....+..++|+|++++.++..... ...+++++
T Consensus 190 ~PG~v~T~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~p~dva~~v~~l~s~~~~-----~~tG~~i~ 248 (266)
T 3oig_A 190 SAGPIRTLSAKGIS-------DFNSILKDIEERA---------PLRRTTTPEEVGDTAAFLFSDMSR-----GITGENLH 248 (266)
T ss_dssp EECCCCSGGGTTCT-------THHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred ecCccccccccccc-------chHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCCchh-----cCcCCEEE
Confidence 99999876433211 1112222221111 112367899999999998875432 23578999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 249 vdGG 252 (266)
T 3oig_A 249 VDSG 252 (266)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8876
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-16 Score=152.33 Aligned_cols=204 Identities=15% Similarity=0.116 Sum_probs=134.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc----CCCccc-CCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT----CSTSKE-SAQAPD 169 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~----~~~~~~-Dl~~~~ 169 (545)
+++|+||||||+|+||++++++|++.|+ +|+++.|+.. ++..... .++.. ...++. |++
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~~~Dl~--- 93 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGL---KVVGCARTVG------NIEELAA----ECKSAGYPGTLIPYRCDLS--- 93 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHHTTCSSEEEEEECCTT---
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEECChH------HHHHHHH----HHHhcCCCceEEEEEecCC---
Confidence 5789999999999999999999999875 6888888632 2222111 11111 122333 887
Q ss_pred CCCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHH----HHHHHHHHHHccCC--ceEEE
Q psy16252 170 LGLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCA----TQTMLDLAKQCKNL--KMFTY 229 (545)
Q Consensus 170 lgl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~g----t~~ll~~a~~~~~~--~~~v~ 229 (545)
+.+++..+++ ++|+|||+||... ..+.++..+++|+.| ++++++.+++. +. .++|+
T Consensus 94 ---~~~~v~~~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~-~~~~g~iv~ 169 (279)
T 1xg5_A 94 ---NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKER-NVDDGHIIN 169 (279)
T ss_dssp ---CHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCSCEEEE
T ss_pred ---CHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCceEEE
Confidence 5666666654 7999999999653 235678889999999 66667777665 44 79999
Q ss_pred EeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCC
Q psy16252 230 VSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFF 302 (545)
Q Consensus 230 vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l 302 (545)
+||..++.... . .....|+.||+..|.+.+.++ .++
T Consensus 170 isS~~~~~~~~--------~-----------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i 212 (279)
T 1xg5_A 170 INSMSGHRVLP--------L-----------------------------SVTHFYSATKYAVTALTEGLRQELREAQTHI 212 (279)
T ss_dssp ECCGGGTSCCS--------C-----------------------------GGGHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred EcChhhcccCC--------C-----------------------------CCCchhHHHHHHHHHHHHHHHHHHhhcCCCe
Confidence 99997753210 0 001579999999988877543 479
Q ss_pred CEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 303 PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 303 ~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
++++++||.|.++.... ............ .....+++++|+|++++.++..+.
T Consensus 213 ~v~~v~Pg~v~t~~~~~------~~~~~~~~~~~~------------~~~~~~~~~~dvA~~i~~l~~~~~ 265 (279)
T 1xg5_A 213 RATCISPGVVETQFAFK------LHDKDPEKAAAT------------YEQMKCLKPEDVAEAVIYVLSTPA 265 (279)
T ss_dssp EEEEEEESCBCSSHHHH------HTTTCHHHHHHH------------HC---CBCHHHHHHHHHHHHHSCT
T ss_pred EEEEEecCcccchhhhh------hcccChhHHhhh------------cccccCCCHHHHHHHHHHHhcCCc
Confidence 99999999987652100 000000000000 011246889999999999887543
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=146.23 Aligned_cols=222 Identities=15% Similarity=0.149 Sum_probs=144.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+++||||+|+||++++++|++.|.+ ..|++..|+. ++++..... + .....++. |++ +.+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~-~~v~~~~r~~------~~~~~~~~~----~-~~~~~~~~~Dv~------~~~ 63 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKD-TVVYGVARSE------APLKKLKEK----Y-GDRFFYVVGDIT------EDS 63 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSS-CEEEEEESCH------HHHHHHHHH----H-GGGEEEEESCTT------SHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCC-eEEEEecCCH------HHHHHHHHH----h-CCceEEEECCCC------CHH
Confidence 589999999999999999999998643 3677777763 222221111 1 11223334 888 566
Q ss_pred HHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEeccccc
Q psy16252 176 DKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 176 ~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~v~ 236 (545)
+++.+++ ++|++|||||.... .+.++..+++|+.|+.++++++. +. + .++|++||..+.
T Consensus 64 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~-g~iv~isS~~~~ 141 (254)
T 3kzv_A 64 VLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKT-N-GNVVFVSSDACN 141 (254)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T-CEEEEECCSCCC
T ss_pred HHHHHHHHHHHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-C-CeEEEEcCchhc
Confidence 6666654 78999999997421 35678889999999999999883 33 3 699999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceee
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVI 313 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~ 313 (545)
.... ....|+.||+..+.+.+.++ .++++..++||.|.
T Consensus 142 ~~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~ 182 (254)
T 3kzv_A 142 MYFS---------------------------------------SWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVD 182 (254)
T ss_dssp CSSC---------------------------------------CSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCC
T ss_pred cCCC---------------------------------------CcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccc
Confidence 3211 11689999999999998876 68999999999998
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc-cccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH-ERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~-~~~~~~~~~~~vy~i~~~ 391 (545)
++......................... .....+..++|+|++++.++.... . ...++.+++.++
T Consensus 183 t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~r~~~p~dva~~v~~L~s~~~~~-----~itG~~i~vdg~ 247 (254)
T 3kzv_A 183 TDMQVNIRENVGPSSMSAEQLKMFRGL---------KENNQLLDSSVPATVYAKLALHGIPD-----GVNGQYLSYNDP 247 (254)
T ss_dssp CCCSCCCCCCCCTTTSCHHHHHHHHHH---------HTTC----CHHHHHHHHHHHHHCCCG-----GGTTCEEETTCG
T ss_pred chhHHHhhcccCccccCHHHHHHHHHH---------HhcCCcCCcccHHHHHHHHHhhcccC-----CCCccEEEecCc
Confidence 875433211110000001111111110 012246789999999998876552 1 124788887765
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=149.13 Aligned_cols=214 Identities=14% Similarity=0.085 Sum_probs=141.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+++||||||+||++++++|++.|+ +|+++.|+... +.+ .+ ....+. |+++ + +.+
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~---~V~~~~r~~~~------~~~-------~~---~~~~~~~D~~~-~---~~~ 58 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGY---RVAIASRNPEE------AAQ-------SL---GAVPLPTDLEK-D---DPK 58 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCHH------HHH-------HH---TCEEEECCTTT-S---CHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHH------HHH-------hh---CcEEEecCCch-H---HHH
Confidence 58999999999999999999999875 68888887531 111 01 122233 8775 2 222
Q ss_pred -HHHH---HhcCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCc
Q psy16252 176 -DKRL---VTSKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKN 241 (545)
Q Consensus 176 -~~~~---l~~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~ 241 (545)
.+++ .+.++|++||+||... ..+.++..+++|+.|+.++++++... .+..++|++||..++.....
T Consensus 59 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~ 138 (239)
T 2ekp_A 59 GLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGP 138 (239)
T ss_dssp HHHHHHHHHHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCCC
Confidence 1222 2347999999999643 23567888999999999999887431 25689999999977643200
Q ss_pred ccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccC
Q psy16252 242 IEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTW 316 (545)
Q Consensus 242 i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~ 316 (545)
.....|+.||+..|.+.+.++ .+++++++|||.|.++.
T Consensus 139 -------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 181 (239)
T 2ekp_A 139 -------------------------------------VPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEF 181 (239)
T ss_dssp -------------------------------------SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred -------------------------------------CCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCch
Confidence 111679999999999887765 58999999999997753
Q ss_pred CCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 317 KEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
... ............. . .....+..++|+|++++.++..... ...++++++.++
T Consensus 182 ~~~-------~~~~~~~~~~~~~-~--------~p~~~~~~~~dvA~~~~~l~s~~~~-----~~tG~~~~vdgG 235 (239)
T 2ekp_A 182 TLP-------LRQNPELYEPITA-R--------IPMGRWARPEEIARVAAVLCGDEAE-----YLTGQAVAVDGG 235 (239)
T ss_dssp GHH-------HHTCHHHHHHHHT-T--------CTTSSCBCHHHHHHHHHHHTSGGGT-----TCCSCEEEESTT
T ss_pred hhc-------cccCHHHHHHHHh-c--------CCCCCCcCHHHHHHHHHHHcCchhc-----CCCCCEEEECCC
Confidence 110 0000111111111 1 1112478999999999988765332 124778888765
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=150.08 Aligned_cols=213 Identities=15% Similarity=0.058 Sum_probs=144.4
Q ss_pred cCcEEEEeccccccchHHHHHHHh-hCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLR-SFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~-~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++|+||||||+|+||+++++.|++ .| ..|++..|....... ...++. |++ +
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g---~~v~~~~~~~~~~~~------------------~~~~~~~Dv~------~ 55 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN---HTVINIDIQQSFSAE------------------NLKFIKADLT------K 55 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT---EEEEEEESSCCCCCT------------------TEEEEECCTT------C
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC---cEEEEeccccccccc------------------cceEEecCcC------C
Confidence 478999999999999999999998 44 367777776542110 112233 887 6
Q ss_pred HHHHHHHhc-----CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHcc-CCceEEEEeccccccCCC
Q psy16252 174 PDDKRLVTS-----KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQCK-NLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 174 ~~~~~~l~~-----~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~~~~~v~vSS~~v~~~~~ 240 (545)
.+++..+++ ++|++|||||... ..+.++..+++|+.|+.++++++...- .-.++|++||..+.....
T Consensus 56 ~~~v~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~ 135 (244)
T 4e4y_A 56 QQDITNVLDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKP 135 (244)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCC
Confidence 667777665 7899999999752 235678889999999999999987631 114899999987653211
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
....|+.||+..+.+.+.++ .++++.+++||.|.++
T Consensus 136 ---------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~ 176 (244)
T 4e4y_A 136 ---------------------------------------NSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTD 176 (244)
T ss_dssp ---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCH
T ss_pred ---------------------------------------CCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCch
Confidence 11579999999999988765 5899999999999765
Q ss_pred CCCCCCCCccCc-----cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 316 WKEPIPGWIDNL-----YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 316 ~~~~~~g~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
..... .... .......... ........+..++|+|++++.++..... ...++++++.+
T Consensus 177 ~~~~~---~~~~~~~~~~~~~~~~~~~---------~~~~p~~r~~~p~dvA~~v~~l~s~~~~-----~itG~~i~vdG 239 (244)
T 4e4y_A 177 LYRNL---IQKYANNVGISFDEAQKQE---------EKEFPLNRIAQPQEIAELVIFLLSDKSK-----FMTGGLIPIDG 239 (244)
T ss_dssp HHHHH---HHHHHHHHTCCHHHHHHHH---------HTTSTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred hhHHH---HHhhhhhcCCCHHHHHHHH---------hhcCCCCCCcCHHHHHHHHHHHhcCccc-----cccCCeEeECC
Confidence 21100 0000 0000011111 1112234578899999999998865432 22478998877
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 240 G 240 (244)
T 4e4y_A 240 G 240 (244)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-15 Score=147.17 Aligned_cols=232 Identities=14% Similarity=0.072 Sum_probs=150.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC----------CHHHHHHhhHHHHHHhhhhc--CCCcc
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ----------SPQQRIDKMLDTVAISLKFT--CSTSK 162 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~----------~~~~rl~~~~~~~~~~~~~~--~~~~~ 162 (545)
+++|+++||||+|+||+++++.|++.|. +|+++.|+.... ...+++..... .+... ...++
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 81 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEGA---DIIAVDICKPIRAGVVDTAIPASTPEDLAETAD----LVKGHNRRIVTA 81 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHH----HHHTTTCCEEEE
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeccccccccccccccccCCHHHHHHHHH----HHhhcCCceEEE
Confidence 5789999999999999999999999975 688888863211 11233333222 12222 22233
Q ss_pred c-CCCCCCCCCCHHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc----c
Q psy16252 163 E-SAQAPDLGLSPDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC----K 222 (545)
Q Consensus 163 ~-Dl~~~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~----~ 222 (545)
. |++ +.+++..+++ ++|++|||||.... .+.++..+++|+.|+.++++++... +
T Consensus 82 ~~Dv~------~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~ 155 (286)
T 3uve_A 82 EVDVR------DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGG 155 (286)
T ss_dssp ECCTT------CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred EcCCC------CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence 3 888 5666766654 78999999997431 3567888999999999999987642 1
Q ss_pred CCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---
Q psy16252 223 NLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--- 299 (545)
Q Consensus 223 ~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--- 299 (545)
.-.++|++||..+.... .....|+.||+..+.+.+.++
T Consensus 156 ~~g~iv~isS~~~~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~ 196 (286)
T 3uve_A 156 RGGSIILTSSVGGLKAY---------------------------------------PHTGHYVAAKHGVVGLMRAFGVEL 196 (286)
T ss_dssp SCEEEEEECCGGGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECchhhccCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHh
Confidence 24689999998765321 112679999999998887765
Q ss_pred --cCCCEEEEccceeeccCCCCCCC---CccC--ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 300 --QFFPVCIFRPSIVISTWKEPIPG---WIDN--LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 300 --~~l~~~i~Rp~~i~g~~~~~~~g---~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.++++..++||.|.++....... +... ...+......... .. .....+..++|+|++++.++...
T Consensus 197 ~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~p~r~~~p~dvA~~v~fL~s~~ 268 (286)
T 3uve_A 197 GQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQM-------FH-TLPIPWVEPIDISNAVLFFASDE 268 (286)
T ss_dssp GGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHT-------TC-SSSCSCBCHHHHHHHHHHHHSGG
T ss_pred cccCeEEEEEecCcccCCcccccchhhhccccccccchhhHHHHHHh-------hh-ccCCCcCCHHHHHHHHHHHcCcc
Confidence 68999999999997763221000 0000 0000000000000 00 11145789999999999887654
Q ss_pred ccccCCCCCCCCEEEeecC
Q psy16252 373 HERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 373 ~~~~~~~~~~~~vy~i~~~ 391 (545)
.. ...++++++.++
T Consensus 269 a~-----~itG~~i~vdGG 282 (286)
T 3uve_A 269 AR-----YITGVTLPIDAG 282 (286)
T ss_dssp GT-----TCCSCEEEESTT
T ss_pred cc-----CCcCCEEeECCc
Confidence 32 235789998876
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=151.98 Aligned_cols=225 Identities=11% Similarity=0.071 Sum_probs=146.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc-----CCCccc-CCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT-----CSTSKE-SAQAP 168 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~-----~~~~~~-Dl~~~ 168 (545)
+++|+++||||+|+||++++++|++.|+ +|+++.|+.. +++.... .+... ...++. |++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~~~~Dv~-- 68 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGA---NVTITGRSSE------RLEETRQ----IILKSGVSEKQVNSVVADVT-- 68 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHTTTCCGGGEEEEECCTT--
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHHcCCCCcceEEEEecCC--
Confidence 4679999999999999999999999875 6888888632 2222111 11111 223334 888
Q ss_pred CCCCCHHHHHHHhc-------CccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceE
Q psy16252 169 DLGLSPDDKRLVTS-------KVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMF 227 (545)
Q Consensus 169 ~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~ 227 (545)
+.++++.+++ ++|+||||||.... .+.++..+++|+.|+.++++++... .+ .++
T Consensus 69 ----~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~i 143 (280)
T 1xkq_A 69 ----TEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEI 143 (280)
T ss_dssp ----SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEE
T ss_pred ----CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcE
Confidence 5666666654 68999999996421 2456788999999999999987652 13 799
Q ss_pred EEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCC
Q psy16252 228 TYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFF 302 (545)
Q Consensus 228 v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l 302 (545)
|++||..+..... .....|+.||+..+.+.+.++ .++
T Consensus 144 v~isS~~~~~~~~--------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi 185 (280)
T 1xkq_A 144 VNVSSIVAGPQAQ--------------------------------------PDFLYYAIAKAALDQYTRSTAIDLAKFGI 185 (280)
T ss_dssp EEECCGGGSSSCC--------------------------------------CSSHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEecCccccCCCC--------------------------------------CcccHHHHHHHHHHHHHHHHHHHhccCCe
Confidence 9999987653210 011579999999999988764 589
Q ss_pred CEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc-ccccCCCCC
Q psy16252 303 PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG-HERFHKDPS 381 (545)
Q Consensus 303 ~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~-~~~~~~~~~ 381 (545)
++++++||.|.++........................ ......+..++|+|++++.++... .. ..
T Consensus 186 ~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~~~~~pedvA~~v~~l~s~~~~~-----~~ 251 (280)
T 1xkq_A 186 RVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKE---------CIPIGAAGKPEHIANIILFLADRNLSF-----YI 251 (280)
T ss_dssp EEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT---------TCTTSSCBCHHHHHHHHHHHHCHHHHT-----TC
T ss_pred EEEEEeeCcCcCCcccccccccccccchHHHHHHHHc---------CCCCCCCCCHHHHHHHHHHhcCccccc-----Cc
Confidence 9999999999876311100000000000011111111 011234789999999999887654 21 12
Q ss_pred CCCEEEeecC
Q psy16252 382 CLPIYNYVNS 391 (545)
Q Consensus 382 ~~~vy~i~~~ 391 (545)
.++++++.++
T Consensus 252 tG~~i~vdgG 261 (280)
T 1xkq_A 252 LGQSIVADGG 261 (280)
T ss_dssp CSCEEEESTT
T ss_pred cCCeEEECCC
Confidence 4789998876
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-16 Score=152.37 Aligned_cols=220 Identities=10% Similarity=0.018 Sum_probs=148.2
Q ss_pred hhcCcEEEEeccccc--cchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGATGF--LGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGatGf--lG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l 170 (545)
.+++|+|+||||+|+ ||+++++.|++.|. +|++..|+.. ..+.+...... . ....++. |++
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~---~V~~~~r~~~---~~~~~~~~~~~----~--~~~~~~~~Dv~---- 91 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGA---ELAFTYQGDA---LKKRVEPLAEE----L--GAFVAGHCDVA---- 91 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTC---EEEEEECSHH---HHHHHHHHHHH----H--TCEEEEECCTT----
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC---EEEEEcCCHH---HHHHHHHHHHh----c--CCceEEECCCC----
Confidence 367899999999998 99999999999975 6888888631 12222221111 1 1223334 888
Q ss_pred CCCHHHHHHHhc-------CccEEEEcccccc-----------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEe
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLR-----------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVS 231 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vS 231 (545)
+.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+-.++|++|
T Consensus 92 --d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 92 --DAASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp --CHHHHHHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred --CHHHHHHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 5666666654 7899999999753 13567788999999999999998763 2345899999
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
|..+.... .....|+.||+..+.+.+.++ .++++.+
T Consensus 170 S~~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~ 210 (293)
T 3grk_A 170 YYGAEKVM---------------------------------------PNYNVMGVAKAALEASVKYLAVDLGPQNIRVNA 210 (293)
T ss_dssp CGGGTSBC---------------------------------------TTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred ehhhccCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEE
Confidence 98765421 112679999999999988765 5899999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
++||.|.++..... ............. .....+..++|+|++++.++..... ...++++
T Consensus 211 v~PG~v~T~~~~~~-------~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~~~~-----~itG~~i 269 (293)
T 3grk_A 211 ISAGPIKTLAASGI-------GDFRYILKWNEYN---------APLRRTVTIDEVGDVGLYFLSDLSR-----SVTGEVH 269 (293)
T ss_dssp EEECCCCC-------------CCHHHHHHHHHHH---------STTSSCCCHHHHHHHHHHHHSGGGT-----TCCSCEE
T ss_pred EecCCCcchhhhcc-------cchHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccc-----CCcceEE
Confidence 99999987633221 1111122211111 1112367789999999988765432 2357899
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
++.++
T Consensus 270 ~vdGG 274 (293)
T 3grk_A 270 HADSG 274 (293)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 98877
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-15 Score=144.75 Aligned_cols=216 Identities=13% Similarity=0.034 Sum_probs=144.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+.+|+|+||||+|+||++++++|++.|+ +|+++.+... ++...... .+... ...++. |++
T Consensus 24 l~~k~vlVTGas~gIG~~la~~l~~~G~---~v~i~~~r~~-----~~~~~~~~----~l~~~~~~~~~~~~Dl~----- 86 (267)
T 4iiu_A 24 AMSRSVLVTGASKGIGRAIARQLAADGF---NIGVHYHRDA-----AGAQETLN----AIVANGGNGRLLSFDVA----- 86 (267)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCH-----HHHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCch-----HHHHHHHH----HHHhcCCceEEEEecCC-----
Confidence 4579999999999999999999999976 5655554321 12222111 11111 233444 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~ 233 (545)
+.+++.++++ .+|+|||+||... ..+.++..+++|+.|+.++++.+.. ..+..++|++||.
T Consensus 87 -~~~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~ 165 (267)
T 4iiu_A 87 -NREQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSV 165 (267)
T ss_dssp -CHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCH
T ss_pred -CHHHHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcch
Confidence 5666666654 7899999999753 2356788899999999999998741 1256799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..+.+.+.++ .++++.+++
T Consensus 166 ~~~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~ 206 (267)
T 4iiu_A 166 SGVMGN---------------------------------------RGQVNYSAAKAGIIGATKALAIELAKRKITVNCIA 206 (267)
T ss_dssp HHHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HhccCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEE
Confidence 664321 112679999997777776554 589999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++.... . ........... ....+..++|+|++++.++..... ...++++++
T Consensus 207 PG~v~t~~~~~-------~---~~~~~~~~~~~---------p~~~~~~~edva~~~~~L~s~~~~-----~itG~~i~v 262 (267)
T 4iiu_A 207 PGLIDTGMIEM-------E---ESALKEAMSMI---------PMKRMGQAEEVAGLASYLMSDIAG-----YVTRQVISI 262 (267)
T ss_dssp ECSBCSTTCCC-------C---HHHHHHHHHTC---------TTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred EeeecCCcccc-------c---HHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCCccc-----CccCCEEEe
Confidence 99997753221 1 12222222211 123467899999999988765432 235788988
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 263 dGG 265 (267)
T 4iiu_A 263 NGG 265 (267)
T ss_dssp STT
T ss_pred CCC
Confidence 765
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=147.52 Aligned_cols=196 Identities=13% Similarity=0.132 Sum_probs=133.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+||||||+|+||++++++|++.|. +|+++.|+. ++++.... .+... ...++. |++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~------~~~~~~~~----~~~~~~~~~~~~~~D~~----- 88 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLGA---RVVLTARDV------EKLRAVER----EIVAAGGEAESHACDLS----- 88 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHHTTCEEEEEECCTT-----
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HHHHhCCceeEEEecCC-----
Confidence 5689999999999999999999999875 688888863 22222111 11111 223334 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.+++..+++ .+|+|||+||... ..+.++..+++|+.|+.++++.+... .+..+||++||.
T Consensus 89 -~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~ 167 (262)
T 3rkr_A 89 -HSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSL 167 (262)
T ss_dssp -CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred -CHHHHHHHHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEech
Confidence 5666666554 5899999999721 23557788999999999999887541 255799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..+.+++.++ .++++.+++
T Consensus 168 ~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~ 208 (262)
T 3rkr_A 168 AGKNPV---------------------------------------ADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVA 208 (262)
T ss_dssp CSSCCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred hhcCCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEe
Confidence 765321 112679999999999887765 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
||.|..+..... . .......++..+|||++++.++.....
T Consensus 209 PG~v~t~~~~~~-----------------~---------~~~~~~~~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 209 PGSVRTEFGVGL-----------------S---------AKKSALGAIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp ECCC------------------------------------------CCCHHHHHHHHHHHHTCCTT
T ss_pred cCCCcCCccccc-----------------c---------cccccccCCCHHHHHHHHHHHhcCccc
Confidence 999866421100 0 001123467899999999998876543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-15 Score=145.43 Aligned_cols=232 Identities=16% Similarity=0.096 Sum_probs=151.6
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC------CHHHHHHhhHHHHHHhhhhc--CCCccc-
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ------SPQQRIDKMLDTVAISLKFT--CSTSKE- 163 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~------~~~~rl~~~~~~~~~~~~~~--~~~~~~- 163 (545)
..+++|+++||||+|+||.++++.|++.|. +|+++.|++... ...+++...... +... ...++.
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 96 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGA---DIIAIDVCKQLDGVKLPMSTPDDLAETVRQ----VEALGRRIIASQV 96 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECCSCCTTCCSCCCCHHHHHHHHHH----HHHTTCCEEEEEC
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEecccccccccccccCHHHHHHHHHH----HHhcCCceEEEEC
Confidence 346789999999999999999999999975 688888864321 112333332221 2221 223334
Q ss_pred CCCCCCCCCCHHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc----cCC
Q psy16252 164 SAQAPDLGLSPDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC----KNL 224 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~ 224 (545)
|++ +.+++..+++ .+|++|||||.... .+.++..+++|+.|+.++++++... ++.
T Consensus 97 Dv~------~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~ 170 (299)
T 3t7c_A 97 DVR------DFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRG 170 (299)
T ss_dssp CTT------CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSC
T ss_pred CCC------CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC
Confidence 888 5666666654 78999999996531 3567889999999999999987542 235
Q ss_pred ceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----
Q psy16252 225 KMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----- 299 (545)
Q Consensus 225 ~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----- 299 (545)
.++|++||..+.... .....|+.||+..+.+.+.++
T Consensus 171 g~Iv~isS~~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~ 211 (299)
T 3t7c_A 171 GSIVFTSSIGGLRGA---------------------------------------ENIGNYIASKHGLHGLMRTMALELGP 211 (299)
T ss_dssp EEEEEECCGGGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cEEEEECChhhccCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 799999998765321 112679999999999887765
Q ss_pred cCCCEEEEccceeeccCCCCCC-------CCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 300 QFFPVCIFRPSIVISTWKEPIP-------GWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 300 ~~l~~~i~Rp~~i~g~~~~~~~-------g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
.|+++..++||.|.++.....+ .+.... .......... .. .....+..++|||++++.++...
T Consensus 212 ~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~-~~p~r~~~pedvA~~v~fL~s~~ 281 (299)
T 3t7c_A 212 RNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPT--VEDFQVASRQ-------MH-VLPIPYVEPADISNAILFLVSDD 281 (299)
T ss_dssp GTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCC--HHHHHHHHHH-------HS-SSSCSCBCHHHHHHHHHHHHSGG
T ss_pred cCcEEEEEecCCccCccccccchhhhhhhhhccch--hhHHHHHhhh-------hc-ccCcCCCCHHHHHHHHHHHhCcc
Confidence 5899999999999876322100 000000 0000000000 00 00134778999999999988654
Q ss_pred ccccCCCCCCCCEEEeecC
Q psy16252 373 HERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 373 ~~~~~~~~~~~~vy~i~~~ 391 (545)
.. ...+.++++.++
T Consensus 282 a~-----~itG~~i~vdGG 295 (299)
T 3t7c_A 282 AR-----YITGVSLPVDGG 295 (299)
T ss_dssp GT-----TCCSCEEEESTT
T ss_pred cc-----cCcCCEEeeCCC
Confidence 32 235789998876
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-16 Score=149.42 Aligned_cols=207 Identities=10% Similarity=0.065 Sum_probs=140.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|+|+||||+|+||++++++|++.|+ +|+++.|+..... ...++. |++ +
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~-------------------~~~~~~~Dl~------d 70 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAGD---KVAITYRSGEPPE-------------------GFLAVKCDIT------D 70 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSCCCT-------------------TSEEEECCTT------S
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChHhhc-------------------cceEEEecCC------C
Confidence 5679999999999999999999999975 6888888754321 112222 777 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 71 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~ 150 (253)
T 2nm0_A 71 TEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGL 150 (253)
T ss_dssp HHHHHHHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhC
Confidence 666666654 47999999997532 2456788999999999999877542 246799999998664
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..+.+.+.++ .++++++++||.
T Consensus 151 ~~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~ 191 (253)
T 2nm0_A 151 LGSA---------------------------------------GQANYAASKAGLVGFARSLARELGSRNITFNVVAPGF 191 (253)
T ss_dssp CCHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECS
T ss_pred CCCC---------------------------------------CcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCc
Confidence 3210 01579999999998887654 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.++.... +.. ......... .....++..+|+|++++.++..... ...++++.+.++
T Consensus 192 v~T~~~~~---~~~------~~~~~~~~~---------~p~~~~~~p~dvA~~i~~l~s~~~~-----~~tG~~i~vdGG 248 (253)
T 2nm0_A 192 VDTDMTKV---LTD------EQRANIVSQ---------VPLGRYARPEEIAATVRFLASDDAS-----YITGAVIPVDGG 248 (253)
T ss_dssp BCC------------------CHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred CcCcchhh---cCH------HHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccc-----CCcCcEEEECCc
Confidence 86642111 000 000111110 1112478999999999988765432 124788888776
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-15 Score=145.23 Aligned_cols=231 Identities=10% Similarity=-0.010 Sum_probs=147.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||++++++|++.|. +|++..|+. ++++.....+-.........++. |++ +
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~------~~~~~~~~~l~~~~~~~~~~~~~~Dv~------~ 70 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA---AVAFCARDG------ERLRAAESALRQRFPGARLFASVCDVL------D 70 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHHHHSTTCCEEEEECCTT------C
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHHHHHHhcCCceEEEEeCCCC------C
Confidence 4689999999999999999999999975 688888863 22222211111101111123333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.+++..+++ ++|++|||||.... .+.++..+++|+.|+.++++++... .+-.++|++||..+.
T Consensus 71 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 150 (265)
T 3lf2_A 71 ALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLAS 150 (265)
T ss_dssp HHHHHHHHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccC
Confidence 566665554 68999999997532 3567888999999999999988652 235689999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..+.+.+.++ .++++..++||.
T Consensus 151 ~~~~---------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~ 191 (265)
T 3lf2_A 151 QPEP---------------------------------------HMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGL 191 (265)
T ss_dssp SCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred CCCC---------------------------------------CchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCc
Confidence 3211 11689999999999887765 589999999999
Q ss_pred eeccCCCCCCCC-ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 312 VISTWKEPIPGW-IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 312 i~g~~~~~~~g~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
|.++........ .........+....... .....-.+..++|+|++++.++..... ...+.++++.+
T Consensus 192 v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~~r~~~pedvA~~v~fL~s~~~~-----~itG~~i~vdG 259 (265)
T 3lf2_A 192 VESGQWRRRFEAREERELDWAQWTAQLARN-------KQIPLGRLGKPIEAARAILFLASPLSA-----YTTGSHIDVSG 259 (265)
T ss_dssp BCCHHHHHHHTC------CHHHHHHHHHHH-------TTCTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSEEEEESS
T ss_pred CcCchhhhhhhhhhhhccCHHHHHHHHhhc-------cCCCcCCCcCHHHHHHHHHHHhCchhc-----CcCCCEEEECC
Confidence 876521100000 00000001111111100 001122467899999999988765432 22477888877
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 260 G 260 (265)
T 3lf2_A 260 G 260 (265)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-16 Score=147.00 Aligned_cols=200 Identities=15% Similarity=0.116 Sum_probs=140.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
.++|+|+||||+|+||++++++|++.|+ +|+++.|+...... ...++. |++ +
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~------------------~~~~~~~D~~------~ 57 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW---WVASIDVVENEEAS------------------ASVIVKMTDS------F 57 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSCCTTSS------------------EEEECCCCSC------H
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCChhhccC------------------CcEEEEcCCC------C
Confidence 3579999999999999999999999875 68888997643210 011222 776 4
Q ss_pred HHHHHHHhc---------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEecccc
Q psy16252 174 PDDKRLVTS---------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~---------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v 235 (545)
.++++.+++ ++|+||||||... ..+.++..+++|+.|+.++++++... .+-.++|++||..+
T Consensus 58 ~~~v~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 137 (241)
T 1dhr_A 58 TEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAA 137 (241)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHH
Confidence 555555543 7999999999642 12456778899999999999998763 11258999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEEc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIFR 308 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~R 308 (545)
..... ....|+.||+..+.+.+.++ .++++++++
T Consensus 138 ~~~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~ 178 (241)
T 1dhr_A 138 LDGTP---------------------------------------GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVL 178 (241)
T ss_dssp GSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEE
T ss_pred ccCCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEe
Confidence 53211 11579999999999998765 258999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|-.+ +...... ......+++.+|+|++++.++..... ...++.+++
T Consensus 179 PG~v~T~-----------------~~~~~~~---------~~~~~~~~~~~~vA~~v~~l~~~~~~-----~~~G~~~~v 227 (241)
T 1dhr_A 179 PVTLDTP-----------------MNRKSMP---------EADFSSWTPLEFLVETFHDWITGNKR-----PNSGSLIQV 227 (241)
T ss_dssp ESCEECH-----------------HHHHHST---------TSCGGGSEEHHHHHHHHHHHHTTTTC-----CCTTCEEEE
T ss_pred cCcccCc-----------------cccccCc---------chhhccCCCHHHHHHHHHHHhcCCCc-----CccceEEEE
Confidence 9988553 1111100 11224568899999999988765432 234788888
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 228 ~g~ 230 (241)
T 1dhr_A 228 VTT 230 (241)
T ss_dssp EEE
T ss_pred eCC
Confidence 765
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=152.72 Aligned_cols=219 Identities=11% Similarity=0.066 Sum_probs=141.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|.... .++++.... .++.. ...++. |++
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~---~~~~~~~~~----~~~~~~~~~~~~~~Dv~----- 73 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALESV---NLVLHYHQAKD---SDTANKLKD----ELEDQGAKVALYQSDLS----- 73 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSSC---EEEEEESCGGG---HHHHHHHHH----HHHTTTCEEEEEECCCC-----
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecCccC---HHHHHHHHH----HHHhcCCcEEEEECCCC-----
Confidence 4689999999999999999999999875 68887775432 222322221 12221 223334 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSN 236 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~ 236 (545)
+.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+-.++|++||..+.
T Consensus 74 -d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~ 152 (262)
T 3ksu_A 74 -NEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLA 152 (262)
T ss_dssp -SHHHHHHHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHH
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhc
Confidence 6667766665 7899999999652 23567788999999999999999863 233689999998664
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+.++ .++++..+.||.
T Consensus 153 ~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~ 193 (262)
T 3ksu_A 153 AYT---------------------------------------GFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGP 193 (262)
T ss_dssp HHH---------------------------------------CCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECC
T ss_pred cCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCC
Confidence 321 112579999999999988765 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|..+..... .. .... ...........+..++|+|++++.++.. .. ...++++++.++
T Consensus 194 v~T~~~~~~-------~~-~~~~---------~~~~~~~~~~r~~~pedvA~~v~~L~s~-~~-----~itG~~i~vdGg 250 (262)
T 3ksu_A 194 MDTSFFYGQ-------ET-KEST---------AFHKSQAMGNQLTKIEDIAPIIKFLTTD-GW-----WINGQTIFANGG 250 (262)
T ss_dssp CCTHHHHTC-------C----------------------CCCCSCCGGGTHHHHHHHHTT-TT-----TCCSCEEEESTT
T ss_pred CcCcccccc-------Cc-hHHH---------HHHHhcCcccCCCCHHHHHHHHHHHcCC-CC-----CccCCEEEECCC
Confidence 865421100 00 0000 0001111223467889999999988765 22 135788988876
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=148.37 Aligned_cols=202 Identities=15% Similarity=0.071 Sum_probs=133.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+.+|+++||||+|+||++++++|++.|. +|+++.|+. ++++..... +. ....++. |++ +
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~------~~~~~~~~~----~~-~~~~~~~~Dv~------d 85 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAGY---GVALAGRRL------DALQETAAE----IG-DDALCVPTDVT------D 85 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----HT-SCCEEEECCTT------S
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----hC-CCeEEEEecCC------C
Confidence 4579999999999999999999999975 688888863 222222111 11 2333444 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc---cC--CceEEEEecc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC---KN--LKMFTYVSTA 233 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~--~~~~v~vSS~ 233 (545)
.+++..+++ ++|++|||||.... .+.++..+++|+.|+.++++++... .+ -.++|++||.
T Consensus 86 ~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~ 165 (272)
T 4dyv_A 86 PDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSI 165 (272)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECch
Confidence 667776665 79999999997421 3567888999999999988877542 11 3689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..+.+.+.++ .++++.+++
T Consensus 166 ~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~ 206 (272)
T 4dyv_A 166 SATSPR---------------------------------------PYSAPYTATKHAITGLTKSTSLDGRVHDIACGQID 206 (272)
T ss_dssp STTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhcCCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEE
Confidence 765321 112679999999999988765 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
||.|..+...... .+..... .......+..++|+|++++.++..+..
T Consensus 207 PG~v~T~~~~~~~-----------------~~~~~~~--~~~~~~~~~~pedvA~~v~fL~s~~~~ 253 (272)
T 4dyv_A 207 IGNADTPMAQKMK-----------------AGVPQAD--LSIKVEPVMDVAHVASAVVYMASLPLD 253 (272)
T ss_dssp EEECC-------------------------------------------CHHHHHHHHHHHHHSCTT
T ss_pred ECcccChhhhhhc-----------------ccchhhh--hcccccCCCCHHHHHHHHHHHhCCCCc
Confidence 9999775321110 0000000 011123478999999999999887654
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-16 Score=151.11 Aligned_cols=214 Identities=14% Similarity=0.092 Sum_probs=146.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+. +++..... .+ .....++. |++ +
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~---~Vi~~~r~~------~~~~~~~~----~~-~~~~~~~~~Dl~------~ 87 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGL---GVVIADLAA------EKGKALAD----EL-GNRAEFVSTNVT------S 87 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HH-CTTEEEEECCTT------C
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCh------HHHHHHHH----Hh-CCceEEEEcCCC------C
Confidence 5789999999999999999999999875 688888863 22222211 11 11233444 888 5
Q ss_pred HHHHHHHhc------CccEEEEccccc-c------------chHHHHHHHHHhHHHHHHHHHHHHHc---------cCCc
Q psy16252 174 PDDKRLVTS------KVNLVFHCAATL-R------------FDEELKEAIRTNMCATQTMLDLAKQC---------KNLK 225 (545)
Q Consensus 174 ~~~~~~l~~------~vd~Vih~Aa~~-~------------~~~~~~~~~~~Nv~gt~~ll~~a~~~---------~~~~ 225 (545)
.+++..+++ ++|++||+||.. . ..+.++..+++|+.|+.++++++... .+-.
T Consensus 88 ~~~v~~~~~~~~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g 167 (281)
T 3ppi_A 88 EDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERG 167 (281)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCE
T ss_pred HHHHHHHHHHHHHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCe
Confidence 666666664 689999995432 1 12446888999999999999987642 1345
Q ss_pred eEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----c
Q psy16252 226 MFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----Q 300 (545)
Q Consensus 226 ~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~ 300 (545)
++|++||..+..... ....|+.||+..+.+.+.++ .
T Consensus 168 ~iv~isS~~~~~~~~---------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~ 208 (281)
T 3ppi_A 168 ALVLTASIAGYEGQI---------------------------------------GQTAYAAAKAGVIGLTIAAARDLSSA 208 (281)
T ss_dssp EEEEECCGGGTSCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEEEEecccccCCCC---------------------------------------CCcccHHHHHHHHHHHHHHHHHHhhc
Confidence 899999997753311 12679999998888877654 5
Q ss_pred CCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCC
Q psy16252 301 FFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDP 380 (545)
Q Consensus 301 ~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~ 380 (545)
++++.+++||.|..+.... .. ........... .....+..++|+|++++.++.....
T Consensus 209 gi~v~~v~PG~v~T~~~~~-------~~--~~~~~~~~~~~--------~~~~~~~~pedvA~~v~~l~s~~~~------ 265 (281)
T 3ppi_A 209 GIRVNTIAPGTMKTPIMES-------VG--EEALAKFAANI--------PFPKRLGTPDEFADAAAFLLTNGYI------ 265 (281)
T ss_dssp TEEEEEEEECSBCCHHHHT-------TC--HHHHHHHHHTC--------CSSSSCBCHHHHHHHHHHHHHCSSC------
T ss_pred CeEEEEEecCcCCchhhhc-------cc--HHHHHHHHhcC--------CCCCCCCCHHHHHHHHHHHHcCCCc------
Confidence 8999999999987652211 10 11222222211 1113578999999999998875443
Q ss_pred CCCCEEEeecC
Q psy16252 381 SCLPIYNYVNS 391 (545)
Q Consensus 381 ~~~~vy~i~~~ 391 (545)
.++++++.++
T Consensus 266 -tG~~i~vdGG 275 (281)
T 3ppi_A 266 -NGEVMRLDGA 275 (281)
T ss_dssp -CSCEEEESTT
T ss_pred -CCcEEEECCC
Confidence 5889999877
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-16 Score=149.34 Aligned_cols=228 Identities=12% Similarity=0.053 Sum_probs=147.0
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~l 170 (545)
-+++|+++||||+|+||++++++|++.|+ +|+++.|... +.++.... .++.. ...++. |++
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~Dv~---- 78 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGA---KVVVNYANST-----KDAEKVVS----EIKALGSDAIAIKADIR---- 78 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTC---EEEEEESSCH-----HHHHHHHH----HHHHTTCCEEEEECCTT----
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCCH-----HHHHHHHH----HHHhcCCcEEEEEcCCC----
Confidence 36789999999999999999999999975 6777666432 12222111 11111 223334 888
Q ss_pred CCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEecccc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFS 235 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v 235 (545)
+.+++.++++ .+|++|||||... ..+.++..+++|+.|+.++++++... ..-.++|++||...
T Consensus 79 --~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~ 156 (270)
T 3is3_A 79 --QVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTS 156 (270)
T ss_dssp --SHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTT
T ss_pred --CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchh
Confidence 5666666654 6899999999753 23567888999999999999998874 12248999999863
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
..... .....|+.||+..+.+.+.++ .++++..++||
T Consensus 157 ~~~~~--------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG 198 (270)
T 3is3_A 157 KDFSV--------------------------------------PKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPG 198 (270)
T ss_dssp TTCCC--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEC
T ss_pred ccCCC--------------------------------------CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeC
Confidence 21100 112679999999999988765 58999999999
Q ss_pred eeeccCCCCCC-CCccC--ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 311 IVISTWKEPIP-GWIDN--LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 311 ~i~g~~~~~~~-g~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
.|.++...... .+... .............. .....+..++|+|++++.++..... ...+++++
T Consensus 199 ~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~r~~~p~dvA~~v~~L~s~~~~-----~itG~~i~ 264 (270)
T 3is3_A 199 GTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHA---------SPLHRNGWPQDVANVVGFLVSKEGE-----WVNGKVLT 264 (270)
T ss_dssp SBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHH---------STTCSCBCHHHHHHHHHHHTSGGGT-----TCCSCEEE
T ss_pred CccChhhhhhhhhccccccccchHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCCccC-----CccCcEEE
Confidence 99775321000 00000 00111111111110 1122457799999999988765432 22478888
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 265 vdGG 268 (270)
T 3is3_A 265 LDGG 268 (270)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 8775
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-16 Score=150.72 Aligned_cols=219 Identities=12% Similarity=-0.001 Sum_probs=150.4
Q ss_pred hcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+| +||+++++.|++.|. +|++..|+.. ..+.+...... . ....++. |++
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~---~V~~~~r~~~---~~~~~~~~~~~----~--~~~~~~~~Dv~----- 90 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA---EVALTYLSET---FKKRVDPLAES----L--GVKLTVPCDVS----- 90 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTTC---EEEEEESSGG---GHHHHHHHHHH----H--TCCEEEECCTT-----
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC---EEEEEeCChH---HHHHHHHHHHh----c--CCeEEEEcCCC-----
Confidence 5789999999998 999999999999975 6888888742 12223222111 1 1223334 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
+.++++.+++ ++|++|||||.... .+.++..+++|+.|+.++++++... ..-.++|++||
T Consensus 91 -d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 91 -DAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp -CHHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 6667766664 67999999997531 2467788999999999999998763 12358999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..+.... .....|+.||+..+.+.+.++ .++++..+
T Consensus 170 ~~~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v 210 (296)
T 3k31_A 170 YGAEKVV---------------------------------------PHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAI 210 (296)
T ss_dssp GGGTSCC---------------------------------------TTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEE
T ss_pred hhhccCC---------------------------------------CCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEE
Confidence 8765321 112679999999999988765 58999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
+||.|.++.... ............... ....+..++|||++++.++..... ...+++++
T Consensus 211 ~PG~v~T~~~~~-------~~~~~~~~~~~~~~~---------p~~r~~~pedvA~~v~fL~s~~a~-----~itG~~i~ 269 (296)
T 3k31_A 211 SAGPVRTLASSG-------ISDFHYILTWNKYNS---------PLRRNTTLDDVGGAALYLLSDLGR-----GTTGETVH 269 (296)
T ss_dssp EECCCCCSSCCS-------CHHHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred EECCCcCchhhc-------ccchHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCCccC-----CccCCEEE
Confidence 999998764321 111111122111111 112356789999999998875432 23588999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 270 vdGG 273 (296)
T 3k31_A 270 VDCG 273 (296)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-16 Score=150.68 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=135.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. ++..... .++. ....++. |++
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~Dl~----- 90 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLKS---KLVLWDINKH------GLEETAA----KCKGLGAKVHTFVVDCS----- 90 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEEcCHH------HHHHHHH----HHHhcCCeEEEEEeeCC-----
Confidence 5689999999999999999999999875 6888888632 2222111 1111 1233344 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..+||++||..
T Consensus 91 -~~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~ 169 (272)
T 1yb1_A 91 -NREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAA 169 (272)
T ss_dssp -CHHHHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred -CHHHHHHHHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechh
Confidence 5566666554 78999999997532 2456778999999988887776531 2568999999997
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--------cCCCEEE
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--------QFFPVCI 306 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--------~~l~~~i 306 (545)
++.... ....|+.||+..|.+++.++ .++++++
T Consensus 170 ~~~~~~---------------------------------------~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~ 210 (272)
T 1yb1_A 170 GHVSVP---------------------------------------FLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTC 210 (272)
T ss_dssp -CCCHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred hcCCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 653210 01579999999999987664 2799999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
+|||.|.++... . .. .....+++++|+|++++.++....
T Consensus 211 v~Pg~v~t~~~~-------~-----~~----------------~~~~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 211 LCPNFVNTGFIK-------N-----PS----------------TSLGPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp EEETHHHHCSTT-------C-----TH----------------HHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred EeCCcccCCccc-------c-----cc----------------ccccCCCCHHHHHHHHHHHHHcCC
Confidence 999998775311 0 00 001246889999999999886543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=146.91 Aligned_cols=218 Identities=12% Similarity=0.065 Sum_probs=140.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
.++|+++||||+|+||++++++|++.|. +|++..+... ...+.+... ++.. ...++. |++
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~---~Vv~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~Dl~----- 87 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGF---TVVINYAGKA--AAAEEVAGK-------IEAAGGKALTAQADVS----- 87 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTC---EEEEEESSCS--HHHHHHHHH-------HHHTTCCEEEEECCTT-----
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEcCCCH--HHHHHHHHH-------HHhcCCeEEEEEcCCC-----
Confidence 4589999999999999999999999976 5666544432 111222111 1111 222333 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSN 236 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~ 236 (545)
+.++++.+++ ++|++|||||.... .+.++..+++|+.|+.++++++... ..-.++|++||..+.
T Consensus 88 -~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~ 166 (267)
T 3u5t_A 88 -DPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVG 166 (267)
T ss_dssp -CHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHH
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhc
Confidence 5666666654 78999999997531 3457788899999999999988763 122589999998664
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+.++ .++++..+.||.
T Consensus 167 ~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~ 207 (267)
T 3u5t_A 167 LLH---------------------------------------PSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGP 207 (267)
T ss_dssp HCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECC
T ss_pred cCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECC
Confidence 321 112679999999999998775 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|..+.... .. .......... ......+..++|+|++++.++..... ...++++++.++
T Consensus 208 v~T~~~~~------~~--~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~-----~itG~~i~vdGG 265 (267)
T 3u5t_A 208 TATDLFLE------GK--SDEVRDRFAK---------LAPLERLGTPQDIAGAVAFLAGPDGA-----WVNGQVLRANGG 265 (267)
T ss_dssp BC-------------------CHHHHHT---------SSTTCSCBCHHHHHHHHHHHHSTTTT-----TCCSEEEEESSS
T ss_pred CcCccccc------cC--CHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCcccc-----CccCCEEEeCCC
Confidence 87652110 00 0001111111 11223467899999999988765432 124678887665
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=145.97 Aligned_cols=199 Identities=16% Similarity=0.142 Sum_probs=134.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl 172 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|+.. +++.....+-..... ....++. |++
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~Dv~------ 69 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY---RVVLIARSKQ------NLEKVHDEIMRSNKHVQEPIVLPLDIT------ 69 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC---EEEEEESCHH------HHHHHHHHHHHHCTTSCCCEEEECCTT------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHHHHHHhccccCcceEEeccCC------
Confidence 4579999999999999999999999975 6888888632 222221111110001 2233444 888
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
+.+++..+++ .+|++|||||.... .+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 70 ~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 149 (250)
T 3nyw_A 70 DCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAK 149 (250)
T ss_dssp CHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC----
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhc
Confidence 5566666554 68999999997432 2556788999999999999887431 245799999998754
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..+.+.+.++ .++++..++||.
T Consensus 150 ~~~~---------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~ 190 (250)
T 3nyw_A 150 YGFA---------------------------------------DGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGW 190 (250)
T ss_dssp ---C---------------------------------------CTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred CCCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCc
Confidence 3110 02679999999998887765 589999999998
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
|..+ +...... ......++.++|+|++++.++..+.
T Consensus 191 v~T~-----------------~~~~~~~---------~~~~~~~~~p~dva~~v~~l~s~~~ 226 (250)
T 3nyw_A 191 VNTD-----------------MAKKAGT---------PFKDEEMIQPDDLLNTIRCLLNLSE 226 (250)
T ss_dssp BCSH-----------------HHHHTTC---------CSCGGGSBCHHHHHHHHHHHHTSCT
T ss_pred ccCc-----------------hhhhcCC---------CcccccCCCHHHHHHHHHHHHcCCC
Confidence 8553 1111111 1122457899999999999887654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-15 Score=143.37 Aligned_cols=193 Identities=16% Similarity=0.134 Sum_probs=133.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+|+||||+|+||++++++|++.|. +|+++.|+. ++++..... +. ....++. |++ +.
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~---~V~~~~r~~------~~~~~~~~~----~~-~~~~~~~~D~~------~~ 61 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGH---QVSMMGRRY------QRLQQQELL----LG-NAVIGIVADLA------HH 61 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----HG-GGEEEEECCTT------SH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----hc-CCceEEECCCC------CH
Confidence 468999999999999999999999875 688888863 222222111 11 1233344 888 56
Q ss_pred HHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccC
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~ 238 (545)
++++.+++ .+|++||+||... ..+.++..+++|+.|+.++++++... .+-.++|++||..+...
T Consensus 62 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~ 141 (235)
T 3l6e_A 62 EDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVG 141 (235)
T ss_dssp HHHHHHHHHHHHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSS
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCC
Confidence 66666554 6799999999753 23567888999999999999988642 11238999999876532
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
.. ....|+.||+..+.+.+.++ .++++..++||.|-
T Consensus 142 ~~---------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~ 182 (235)
T 3l6e_A 142 KA---------------------------------------NESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIR 182 (235)
T ss_dssp CS---------------------------------------SHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEEC
T ss_pred CC---------------------------------------CCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCcc
Confidence 11 11579999999999988765 57999999999986
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
.+.... .. . .....+..++|+|++++.++..+..
T Consensus 183 T~~~~~-------~~----------~----------~~~~~~~~pedvA~~v~~l~~~~~~ 216 (235)
T 3l6e_A 183 SEFWDN-------TD----------H----------VDPSGFMTPEDAAAYMLDALEARSS 216 (235)
T ss_dssp CCC--------------------------------------CBCHHHHHHHHHHHTCCCSS
T ss_pred Ccchhc-------cC----------C----------CCCcCCCCHHHHHHHHHHHHhCCCC
Confidence 542110 00 0 0012578999999999999875543
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-15 Score=146.57 Aligned_cols=200 Identities=12% Similarity=0.126 Sum_probs=135.6
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
..+++++|+||||+|+||++++++|++.|+ +|+++.|+.. ++......+- ........++. |++
T Consensus 24 ~~~~~k~vlITGasggIG~~la~~l~~~G~---~V~~~~r~~~------~~~~~~~~~~-~~~~~~~~~~~~Dl~----- 88 (286)
T 1xu9_A 24 EMLQGKKVIVTGASKGIGREMAYHLAKMGA---HVVVTARSKE------TLQKVVSHCL-ELGAASAHYIAGTME----- 88 (286)
T ss_dssp GGGTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHH-HHTCSEEEEEECCTT-----
T ss_pred hhcCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHHHHH-HhCCCceEEEeCCCC-----
Confidence 346789999999999999999999999875 6888888632 2222111110 00011223344 887
Q ss_pred CCHHHHHHHhc-------CccEEEEc-ccccc------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEecccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHC-AATLR------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFS 235 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~-Aa~~~------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v 235 (545)
+.+++..+++ ++|+|||+ |+... ..+.++..+++|+.|+.++++++... .+..++|++||..+
T Consensus 89 -d~~~v~~~~~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~ 167 (286)
T 1xu9_A 89 -DMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAG 167 (286)
T ss_dssp -CHHHHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccc
Confidence 5566665554 78999999 55432 13556788999999999999887642 12369999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEEc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIFR 308 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~R 308 (545)
.... .....|+.||+..|.+++.++ .++++++++
T Consensus 168 ~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~ 208 (286)
T 1xu9_A 168 KVAY---------------------------------------PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCV 208 (286)
T ss_dssp TSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred ccCC---------------------------------------CCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEee
Confidence 5321 112679999999998886643 489999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
||.|.++ +......+ .....+++++|+|++++.++....
T Consensus 209 Pg~v~t~-----------------~~~~~~~~---------~~~~~~~~~~~vA~~i~~~~~~~~ 247 (286)
T 1xu9_A 209 LGLIDTE-----------------TAMKAVSG---------IVHMQAAPKEECALEIIKGGALRQ 247 (286)
T ss_dssp ECCBCCH-----------------HHHHHSCG---------GGGGGCBCHHHHHHHHHHHHHTTC
T ss_pred cCccCCh-----------------hHHHhccc---------cccCCCCCHHHHHHHHHHHHhcCC
Confidence 9987553 11111111 123457899999999999876543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=143.19 Aligned_cols=201 Identities=14% Similarity=0.162 Sum_probs=135.1
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+.+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. +++.....+ .........++. |+...
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~~~-~~~~~~~~~~~~~d~d~~--- 76 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGA---SVVLLGRTEA------SLAEVSDQI-KSAGQPQPLIIALNLENA--- 76 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHH-HHTTSCCCEEEECCTTTC---
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEecCHH------HHHHHHHHH-HhcCCCCceEEEeccccC---
Confidence 346789999999999999999999999975 6888888732 222221111 111111222333 44211
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~ 233 (545)
+.+++..+++ ++|+|||+||... ..+.++..+++|+.|+.++++.+.. ..+..++|++||.
T Consensus 77 -~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~ 155 (247)
T 3i1j_A 77 -TAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSS 155 (247)
T ss_dssp -CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcch
Confidence 4555555543 7899999999742 1356788899999999999998853 1245799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc------cCCCEEEE
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA------QFFPVCIF 307 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~------~~l~~~i~ 307 (545)
.+.... .....|+.||+..+.+.+.++ .++++..+
T Consensus 156 ~~~~~~---------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v 196 (247)
T 3i1j_A 156 VGRKGR---------------------------------------ANWGAYGVSKFATEGLMQTLADELEGVTAVRANSI 196 (247)
T ss_dssp GGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEE
T ss_pred hhcCCC---------------------------------------CCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 765321 112679999999999887654 46889999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
+||.|..+ +...... ......+...+|+|++++.++...
T Consensus 197 ~PG~v~t~-----------------~~~~~~~---------~~~~~~~~~p~dva~~~~~l~s~~ 235 (247)
T 3i1j_A 197 NPGATRTG-----------------MRAQAYP---------DENPLNNPAPEDIMPVYLYLMGPD 235 (247)
T ss_dssp ECCCCSSH-----------------HHHHHST---------TSCGGGSCCGGGGTHHHHHHHSGG
T ss_pred ecCcccCc-----------------cchhccc---------ccCccCCCCHHHHHHHHHHHhCch
Confidence 99987443 1111111 122335677899999999887654
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-15 Score=141.22 Aligned_cols=210 Identities=14% Similarity=0.118 Sum_probs=137.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+++||||+|+||+++++.|++.|+ +|+++.|+. +++..... .+. ....++. |++ +.++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~------~~~~~~~~----~~~-~~~~~~~~Dv~------~~~~ 60 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH---KVIATGRRQ------ERLQELKD----ELG-DNLYIAQLDVR------NRAA 60 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHC-TTEEEEECCTT------CHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHH----Hhc-CceEEEEcCCC------CHHH
Confidence 5799999999999999999999875 688888863 22222111 111 1223333 887 6677
Q ss_pred HHHHhc-------CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccC
Q psy16252 177 KRLVTS-------KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 177 ~~~l~~-------~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~ 238 (545)
++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+..++|++||..+...
T Consensus 61 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~ 140 (248)
T 3asu_A 61 IEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWP 140 (248)
T ss_dssp HHHHHHTSCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccC
Confidence 777765 6899999999642 13567888999999999999887631 24579999999876532
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.||+..+.+.+.++ .++++++++||.|.
T Consensus 141 ~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~ 181 (248)
T 3asu_A 141 Y---------------------------------------AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVG 181 (248)
T ss_dssp C---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBC
T ss_pred C---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccc
Confidence 1 111689999999999987764 58999999999998
Q ss_pred c-cCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 314 S-TWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 314 g-~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
| +.... .+....... .... .....+.++|+|++++.++..... ..+....+.+
T Consensus 182 gT~~~~~------~~~~~~~~~--------~~~~----~~~~~~~p~dvA~~v~~l~s~~~~------~~g~~i~v~~ 235 (248)
T 3asu_A 182 GTEFSNV------RFKGDDGKA--------EKTY----QNTVALTPEDVSEAVWWVSTLPAH------VNINTLEMMP 235 (248)
T ss_dssp C----------------------------------------CCBCHHHHHHHHHHHHHSCTT------CCCCEEEECC
T ss_pred cCcchhh------cccCchHHH--------HHHH----hccCCCCHHHHHHHHHHHhcCCcc------ceeeEEEEcc
Confidence 4 32110 000000000 0000 011236899999999988875432 2355666554
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=144.41 Aligned_cols=203 Identities=14% Similarity=0.103 Sum_probs=133.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lg 171 (545)
+.+|+++||||+|+||+++++.|++.|. +|+++.|+. ++++.... .++... ..++. |++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~------~~~~~~~~----~l~~~~~~~~~~~~Dv~----- 63 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGA---KILLGARRQ------ARIEAIAT----EIRDAGGTALAQVLDVT----- 63 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH------HHHHHHHH----HHHHTTCEEEEEECCTT-----
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HHHhcCCcEEEEEcCCC-----
Confidence 3579999999999999999999999875 688888863 22222211 111111 22333 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.+++..+++ .+|++|||||.... .+.++..+++|+.|+.++++++... .+..++|++||..
T Consensus 64 -d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~ 142 (264)
T 3tfo_A 64 -DRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIG 142 (264)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHH
Confidence 5666666654 78999999997532 3567888999999999988877541 2457999999997
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccce
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSI 311 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~ 311 (545)
+.... .....|+.||+..+.+.+.++ +++++..++||.
T Consensus 143 ~~~~~---------------------------------------~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~ 183 (264)
T 3tfo_A 143 ALSVV---------------------------------------PTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGV 183 (264)
T ss_dssp GTCCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECC
T ss_pred HcccC---------------------------------------CCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 65321 112579999999999988776 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
|.++..... .. ... ..... .....+...+|||++++.++..+..
T Consensus 184 v~T~~~~~~-------~~-~~~-----~~~~~------~~~~~~~~pedvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 184 VESELAGTI-------TH-EET-----MAAMD------TYRAIALQPADIARAVRQVIEAPQS 227 (264)
T ss_dssp C------------------------------------------CCCHHHHHHHHHHHHHSCTT
T ss_pred CcCcccccc-------cc-hhH-----HHHHH------hhhccCCCHHHHHHHHHHHhcCCcc
Confidence 876522110 00 000 00000 0011146899999999999877653
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=147.92 Aligned_cols=226 Identities=14% Similarity=0.109 Sum_probs=146.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++.|+ +|+++.|+.. +++.... .+. ...++. |++ +
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~--~~~~~~~Dv~------d 65 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGA---RVVICDKDES------GGRALEQ----ELP--GAVFILCDVT------Q 65 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HCT--TEEEEECCTT------S
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----Hhc--CCeEEEcCCC------C
Confidence 4689999999999999999999999975 6888888632 2221111 111 122333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~ 236 (545)
.++++.+++ ++|+||||||.... .+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 66 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~ 145 (270)
T 1yde_A 66 EDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGA 145 (270)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcccc
Confidence 666666654 78999999997431 2456888999999999999988641 124799999998653
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..|.+.+.++ .+++++++|||.
T Consensus 146 ~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~ 186 (270)
T 1yde_A 146 IGQ---------------------------------------AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGN 186 (270)
T ss_dssp HCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECS
T ss_pred CCC---------------------------------------CCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCc
Confidence 211 111579999999999988765 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|+++....... ........+...... .....+...+|+|++++.++..... ..++++++.++
T Consensus 187 v~t~~~~~~~~---~~~~~~~~~~~~~~~---------~p~~r~~~p~dva~~v~~L~s~~~~------itG~~i~vdGG 248 (270)
T 1yde_A 187 IWTPLWEELAA---LMPDPRASIREGMLA---------QPLGRMGQPAEVGAAAVFLASEANF------CTGIELLVTGG 248 (270)
T ss_dssp BCCHHHHHHHT---TSSSHHHHHHHHHHT---------STTSSCBCHHHHHHHHHHHHHHCTT------CCSCEEEESTT
T ss_pred cccchhhhhhh---cccchHHHHHHHhhc---------CCCCCCcCHHHHHHHHHHHcccCCC------cCCCEEEECCC
Confidence 98863110000 000001111110000 0112357899999999887764211 24789998887
Q ss_pred CCCcccHHH
Q psy16252 392 KDNPLTWGE 400 (545)
Q Consensus 392 ~~~~~t~~e 400 (545)
..+.+..
T Consensus 249 --~~~~~~~ 255 (270)
T 1yde_A 249 --AELGYGC 255 (270)
T ss_dssp --TTSCC--
T ss_pred --eecccCc
Confidence 4444433
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=158.11 Aligned_cols=204 Identities=18% Similarity=0.192 Sum_probs=142.9
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPD 169 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~ 169 (545)
.+..+++||||||||+||.++++.|++.|. .+|+++.|+.......+.+.. .+... .+.++. |++
T Consensus 222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~--~~vvl~~R~~~~~~~~~~l~~-------~l~~~g~~v~~~~~Dv~--- 289 (486)
T 2fr1_A 222 EWKPTGTVLVTGGTGGVGGQIARWLARRGA--PHLLLVSRSGPDADGAGELVA-------ELEALGARTTVAACDVT--- 289 (486)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTC--SEEEEEESSGGGSTTHHHHHH-------HHHHTTCEEEEEECCTT---
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcCCCCCcHHHHHHHH-------HHHhcCCEEEEEEeCCC---
Confidence 355689999999999999999999999865 368889997643222222221 11111 233444 888
Q ss_pred CCCCHHHHHHHhcCc------cEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccc
Q psy16252 170 LGLSPDDKRLVTSKV------NLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 170 lgl~~~~~~~l~~~v------d~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~ 236 (545)
+.+++..+++++ |+|||+||.... .+.++..+++|+.|+.++++++... ++++||++||..+.
T Consensus 290 ---d~~~v~~~~~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~SS~a~~ 365 (486)
T 2fr1_A 290 ---DRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFSSFASA 365 (486)
T ss_dssp ---CHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEEHHHH
T ss_pred ---CHHHHHHHHHHHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEEEcChHhc
Confidence 677888887754 999999997532 3456778899999999999999886 78999999998653
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeecc
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVIST 315 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~ 315 (545)
... .....|+.+|...+.+..+.. .|+++++++||.+.+.
T Consensus 366 ~g~---------------------------------------~g~~~Yaaaka~l~~la~~~~~~gi~v~~i~pG~~~~~ 406 (486)
T 2fr1_A 366 FGA---------------------------------------PGLGGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGS 406 (486)
T ss_dssp TCC---------------------------------------TTCTTTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC--
T ss_pred CCC---------------------------------------CCCHHHHHHHHHHHHHHHHHHhcCCeEEEEECCeeCCC
Confidence 221 111579999999999887766 7999999999988664
Q ss_pred CCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
. +........ -....+..++.+++++++..++....
T Consensus 407 g----------------m~~~~~~~~------~~~~g~~~i~~e~~a~~l~~~l~~~~ 442 (486)
T 2fr1_A 407 G----------------MAEGPVADR------FRRHGVIEMPPETACRALQNALDRAE 442 (486)
T ss_dssp --------------------------------CTTTTEECBCHHHHHHHHHHHHHTTC
T ss_pred c----------------ccchhHHHH------HHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence 1 000000000 01223567999999999999987554
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=148.39 Aligned_cols=222 Identities=12% Similarity=0.044 Sum_probs=143.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||+++++.|++.|. +|++..|+..... .+...+.. ......++. |++++
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~---~~~~~~~~-----~~~~~~~~~~Dv~~~----- 94 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGA---HVILHGVKPGSTA---AVQQRIIA-----SGGTAQELAGDLSEA----- 94 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSTTTTH---HHHHHHHH-----TTCCEEEEECCTTST-----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCHHHHH---HHHHHHHh-----cCCeEEEEEecCCCH-----
Confidence 5689999999999999999999999975 6888888754321 11111100 011223333 88844
Q ss_pred HHHHHHHhc------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccccc
Q psy16252 174 PDDKRLVTS------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~~------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~ 237 (545)
++...+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+..++|++||..+..
T Consensus 95 -~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~ 173 (275)
T 4imr_A 95 -GAGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR 173 (275)
T ss_dssp -THHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred -HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC
Confidence 34444443 7899999999642 23567888999999999999987431 2457999999987654
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||+..+.+.+.++ .++++..++||.|
T Consensus 174 ~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v 214 (275)
T 4imr_A 174 PK---------------------------------------SVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLV 214 (275)
T ss_dssp CC---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred CC---------------------------------------CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccc
Confidence 21 011569999999999988765 5899999999998
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++..... ............... .....+..++|+|++++.++..... ...++++++.++
T Consensus 215 ~T~~~~~~------~~~~~~~~~~~~~~~--------~p~~r~~~pedvA~~v~fL~s~~a~-----~itG~~i~vdGG 274 (275)
T 4imr_A 215 DTDRNADR------RAQDPEGWDEYVRTL--------NWMGRAGRPEEMVGAALFLASEACS-----FMTGETIFLTGG 274 (275)
T ss_dssp CSHHHHHH------HHHCHHHHHHHHHHH--------STTCSCBCGGGGHHHHHHHHSGGGT-----TCCSCEEEESSC
T ss_pred cCcccccc------cccChHHHHHHHhhc--------CccCCCcCHHHHHHHHHHHcCcccC-----CCCCCEEEeCCC
Confidence 66421100 000001111111100 0112356789999999988765432 224788888764
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=141.54 Aligned_cols=191 Identities=15% Similarity=0.117 Sum_probs=131.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+||||+|+||++++++|++.|. +|+++.|+. ++++.... .+ .....++. |++ +.++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~------~~~~~~~~----~~-~~~~~~~~~D~~------~~~~ 61 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGK---ATYLTGRSE------SKLSTVTN----CL-SNNVGYRARDLA------SHQE 61 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCH------HHHHHHHH----TC-SSCCCEEECCTT------CHHH
T ss_pred CEEEEecCCchHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHH----HH-hhccCeEeecCC------CHHH
Confidence 6799999999999999999999975 588888863 22222111 11 12333444 887 6778
Q ss_pred HHHHhcCc----cEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccCCCccc
Q psy16252 177 KRLVTSKV----NLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSYRKNIE 243 (545)
Q Consensus 177 ~~~l~~~v----d~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~~~~i~ 243 (545)
+..+++.+ |+|||+||... ..+.++..+++|+.|+.++++.+... .+-.++|++||..+....
T Consensus 62 v~~~~~~~~~~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~---- 137 (230)
T 3guy_A 62 VEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPK---- 137 (230)
T ss_dssp HHHHHHSCSSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCC----
T ss_pred HHHHHHHHhhcCCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCC----
Confidence 88887755 89999999652 23557788999999999999988763 112389999998765321
Q ss_pred ccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCC
Q psy16252 244 EIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKE 318 (545)
Q Consensus 244 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~ 318 (545)
.....|+.||+..+.+.+.++ .++++..++||.|..+...
T Consensus 138 -----------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~ 182 (230)
T 3guy_A 138 -----------------------------------AQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWE 182 (230)
T ss_dssp -----------------------------------TTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC------
T ss_pred -----------------------------------CCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHH
Confidence 112689999999999988765 5899999999998654211
Q ss_pred CCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 319 PIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 319 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
. ... ......+.+++|+|++++.++..+.
T Consensus 183 ~-----------------~~~---------~~~~~~~~~~~dvA~~i~~l~~~~~ 211 (230)
T 3guy_A 183 T-----------------SGK---------SLDTSSFMSAEDAALMIHGALANIG 211 (230)
T ss_dssp ------------------------------------CCCHHHHHHHHHHHCCEET
T ss_pred h-----------------cCC---------CCCcccCCCHHHHHHHHHHHHhCcC
Confidence 0 000 0113357899999999999876544
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-16 Score=152.88 Aligned_cols=210 Identities=16% Similarity=0.108 Sum_probs=121.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|+||||+|+||++++++|++ |. .|+++.|+.. ++..... .....++. |+++...--.
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~---~v~~~~r~~~------~~~~~~~-------~~~~~~~~~D~~~~~~~~~ 65 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DH---IVYALGRNPE------HLAALAE-------IEGVEPIESDIVKEVLEEG 65 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TS---EEEEEESCHH------HHHHHHT-------STTEEEEECCHHHHHHTSS
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CC---eEEEEeCCHH------HHHHHHh-------hcCCcceecccchHHHHHH
Confidence 4579999999999999999999987 54 6888888632 2211100 01112222 4432100000
Q ss_pred HHHHHHHhcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccCCCcccc
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSYRKNIEE 244 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~~~~i~E 244 (545)
.....+-+.++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|++||..++....
T Consensus 66 ~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~---- 141 (245)
T 3e9n_A 66 GVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNGPHP---- 141 (245)
T ss_dssp SCGGGTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC-------------
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccccCCC----
Confidence 00001112478999999997532 2446778899999988888876531 0126899999987654311
Q ss_pred cccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCC
Q psy16252 245 IIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEP 319 (545)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~ 319 (545)
....|+.||+..|.+.+.++ .++++.+++||.|.++....
T Consensus 142 -----------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~ 186 (245)
T 3e9n_A 142 -----------------------------------GNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQG 186 (245)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------
T ss_pred -----------------------------------CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhh
Confidence 12679999999999988765 58999999999997753211
Q ss_pred CCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 320 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
. .... ........++.++|+|++++.++..+.. +.+|++.-
T Consensus 187 ~-------------~~~~---------~~~~~~~~~~~p~dvA~~i~~l~~~~~~--------~~~~~i~~ 227 (245)
T 3e9n_A 187 L-------------MDSQ---------GTNFRPEIYIEPKEIANAIRFVIDAGET--------TQITNVDV 227 (245)
T ss_dssp -------------------------------CCGGGSCHHHHHHHHHHHHTSCTT--------EEEEEEEE
T ss_pred h-------------hhhh---------hcccccccCCCHHHHHHHHHHHHcCCCc--------cceeeeEE
Confidence 0 0000 0111123578999999999999877655 67888763
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.4e-15 Score=140.29 Aligned_cols=219 Identities=12% Similarity=0.094 Sum_probs=143.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+|+||.+++++|++.|+ +|+++.+.... ++..... .+.... ..++. |++
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~D~~----- 67 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGA---LVAIHYGNRKE-----EAEETVY----EIQSNGGSAFSIGANLE----- 67 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCSH-----HHHHHHH----HHHHTTCEEEEEECCTT-----
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCchH-----HHHHHHH----HHHhcCCceEEEecCcC-----
Confidence 5689999999999999999999999875 56665444321 1111111 111111 22233 777
Q ss_pred CCHHHHHHHhc-------------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEE
Q psy16252 172 LSPDDKRLVTS-------------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYV 230 (545)
Q Consensus 172 l~~~~~~~l~~-------------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~v 230 (545)
+.++++.+++ .+|++||+||... ..+.++..+++|+.|+.++++.+... .+..++|++
T Consensus 68 -~~~~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~i 146 (255)
T 3icc_A 68 -SLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINI 146 (255)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEe
Confidence 4555555443 2999999999742 13456788999999999999998763 123589999
Q ss_pred eccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 231 STAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 231 SS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
||..+..... ....|+.||+..+.+.+..+ .++++.
T Consensus 147 sS~~~~~~~~---------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~ 187 (255)
T 3icc_A 147 SSAATRISLP---------------------------------------DFIAYSMTKGAINTMTFTLAKQLGARGITVN 187 (255)
T ss_dssp CCGGGTSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred CChhhccCCC---------------------------------------CcchhHHhHHHHHHHHHHHHHHHHhcCeEEE
Confidence 9987653211 11679999999999887765 589999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
.++||.|..+...... ............ .....+..++|+|++++.++..... ...+++
T Consensus 188 ~v~PG~v~t~~~~~~~-------~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~-----~~tG~~ 246 (255)
T 3icc_A 188 AILPGFVKTDMNAELL-------SDPMMKQYATTI---------SAFNRLGEVEDIADTAAFLASPDSR-----WVTGQL 246 (255)
T ss_dssp EEEECCBCCSSSTTTT-------TSHHHHHHHHHT---------STTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCE
T ss_pred EEEEeeecccchhhhc-------ccHHHHHhhhcc---------CCcCCCCCHHHHHHHHHHHhCcccC-----CccCCE
Confidence 9999999776433211 111111111111 1123467899999999888764432 235789
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
+++.++
T Consensus 247 i~vdgG 252 (255)
T 3icc_A 247 IDVSGG 252 (255)
T ss_dssp EEESSS
T ss_pred EEecCC
Confidence 998876
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=146.80 Aligned_cols=206 Identities=14% Similarity=0.085 Sum_probs=134.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|++|||||+|+||++++++|++.|. +|+++.|+.. +++.....+-. .......++. |++ +
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~------~~~~~~~~~~~-~~~~~~~~~~~Dv~------d 94 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGY---SVVITGRRPD------VLDAAAGEIGG-RTGNIVRAVVCDVG------D 94 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHHH-HHSSCEEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHHHHHh-cCCCeEEEEEcCCC------C
Confidence 5689999999999999999999999875 6888888632 22222111100 0011113344 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc----c-CCceEEEEecc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC----K-NLKMFTYVSTA 233 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~~~~v~vSS~ 233 (545)
.+++..+++ .+|++|||||.... .+.++..+++|+.|+.++++++... + +-.++|++||.
T Consensus 95 ~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~ 174 (281)
T 4dry_A 95 PDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSI 174 (281)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 666666654 67999999997421 3567889999999998888876542 1 14689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..+.+.+.++ .++++..++
T Consensus 175 ~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~ 215 (281)
T 4dry_A 175 SAQTPR---------------------------------------PNSAPYTATKHAITGLTKSTALDGRMHDIACGQID 215 (281)
T ss_dssp GGTCCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HhCCCC---------------------------------------CCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEE
Confidence 765321 112679999999999887765 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
||.|..+..... ..+... .........++.++|+|++++.++..+..
T Consensus 216 PG~v~T~~~~~~-----------------~~~~~~--~~~~~~~~~~~~pedvA~~v~fL~s~~~~ 262 (281)
T 4dry_A 216 IGNAATDMTARM-----------------STGVLQ--ANGEVAAEPTIPIEHIAEAVVYMASLPLS 262 (281)
T ss_dssp EECBCC------------------------CEEEC--TTSCEEECCCBCHHHHHHHHHHHHHSCTT
T ss_pred ECcCcChhhhhh-----------------cchhhh--hhhcccccCCCCHHHHHHHHHHHhCCCcc
Confidence 999866422110 000000 00001112367899999999999887654
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-15 Score=148.76 Aligned_cols=223 Identities=13% Similarity=0.033 Sum_probs=144.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe-cCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC--
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV-RAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL-- 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~-R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l-- 170 (545)
+++|+||||||+|+||+++++.|++.|+ +|+++. |+. +++......+-... .....++. |+++++-
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~---~Vv~~~~r~~------~~~~~~~~~l~~~~-~~~~~~~~~Dl~d~~~~~ 113 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGY---AVCLHYHRSA------AEANALSATLNARR-PNSAITVQADLSNVATAP 113 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH------HHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCCH------HHHHHHHHHHHhhc-CCeEEEEEeeCCCchhcc
Confidence 5689999999999999999999999875 688888 753 22222111110000 11233344 8885430
Q ss_pred ---------CCCHHHHHHHhc-------CccEEEEccccccc---------------------hHHHHHHHHHhHHHHHH
Q psy16252 171 ---------GLSPDDKRLVTS-------KVNLVFHCAATLRF---------------------DEELKEAIRTNMCATQT 213 (545)
Q Consensus 171 ---------gl~~~~~~~l~~-------~vd~Vih~Aa~~~~---------------------~~~~~~~~~~Nv~gt~~ 213 (545)
.-+..++..+++ .+|+||||||.... .+.++..+++|+.|+.+
T Consensus 114 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~ 193 (328)
T 2qhx_A 114 VSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYF 193 (328)
T ss_dssp -------CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 000014444443 78999999997531 44567789999999999
Q ss_pred HHHHHHHc---cC------CceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchH
Q psy16252 214 MLDLAKQC---KN------LKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTY 284 (545)
Q Consensus 214 ll~~a~~~---~~------~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 284 (545)
+++++... .+ ..++|++||..+.... .....|
T Consensus 194 l~~~~~~~m~~~~~~~~~~~g~IV~isS~~~~~~~---------------------------------------~~~~~Y 234 (328)
T 2qhx_A 194 LIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL---------------------------------------LGYTIY 234 (328)
T ss_dssp HHHHHHHHHHHSCGGGSCSCEEEEEECCTTTTSCC---------------------------------------TTCHHH
T ss_pred HHHHHHHHHHhcCCcCCCCCcEEEEECchhhccCC---------------------------------------CCcHHH
Confidence 99887641 13 5799999998765321 112679
Q ss_pred HHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcc-cceeh
Q psy16252 285 TLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKA-DIVPA 358 (545)
Q Consensus 285 ~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~v~v 358 (545)
+.||+..+.+.+.++ .++++++++||.|.++. . .. ........... + .. .+..+
T Consensus 235 ~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~-~-------~~---~~~~~~~~~~~-p--------~~~r~~~p 294 (328)
T 2qhx_A 235 TMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-D-------MP---PAVWEGHRSKV-P--------LYQRDSSA 294 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCC-C-------SC---HHHHHHHHTTC-T--------TTTSCBCH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCCc-c-------cc---HHHHHHHHhhC-C--------CCCCCCCH
Confidence 999999999988765 58999999999997753 1 11 11222221111 0 11 36789
Q ss_pred HHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 359 DLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 359 ddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+|+|++++.++..... ...+.++++.++
T Consensus 295 edvA~~v~~l~s~~~~-----~itG~~i~vdGG 322 (328)
T 2qhx_A 295 AEVSDVVIFLCSSKAK-----YITGTCVKVDGG 322 (328)
T ss_dssp HHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred HHHHHHHHHHhCcccc-----CccCcEEEECCC
Confidence 9999999998864322 224788888776
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=8.2e-15 Score=143.41 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=143.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||+++++.|++.|. +|+++.|+.. ++++.....+-.. ......++. |+++++. .
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G~---~V~~~~r~~~-----~~~~~~~~~l~~~-~~~~~~~~~~Dv~~~~~--~ 89 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTGY---RVVIHYHNSA-----EAAVSLADELNKE-RSNTAVVCQADLTNSNV--L 89 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHTC---EEEEEESSCH-----HHHHHHHHHHHHH-STTCEEEEECCCSCSTT--H
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---eEEEEeCCch-----HHHHHHHHHHHhh-cCCceEEEEeecCCccC--C
Confidence 5689999999999999999999999975 6888888741 1222211111000 011223334 8884210 0
Q ss_pred HHHHHHHhc-------CccEEEEcccccc---c--------------hHHHHHHHHHhHHHHHHHHHHHHHcc---C---
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR---F--------------DEELKEAIRTNMCATQTMLDLAKQCK---N--- 223 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~---~--------------~~~~~~~~~~Nv~gt~~ll~~a~~~~---~--- 223 (545)
.+++..+++ ++|+||||||... + .+.++..+++|+.|+.++++.+...- +
T Consensus 90 ~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~ 169 (288)
T 2x9g_A 90 PASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNC 169 (288)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCC
Confidence 556665554 7899999999642 1 13456788999999999998886531 2
Q ss_pred ---CceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-
Q psy16252 224 ---LKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA- 299 (545)
Q Consensus 224 ---~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~- 299 (545)
..++|++||..+.... .....|+.||+..+.+.+.++
T Consensus 170 ~~~~g~iv~isS~~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~ 210 (288)
T 2x9g_A 170 TSSNLSIVNLCDAMVDQPC---------------------------------------MAFSLYNMGKHALVGLTQSAAL 210 (288)
T ss_dssp -CCCEEEEEECCTTTTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEecccccCCC---------------------------------------CCCchHHHHHHHHHHHHHHHHH
Confidence 4689999998765321 111679999998888887664
Q ss_pred ----cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccc-eehHHHHHHHHhccccccc
Q psy16252 300 ----QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADI-VPADLVVNALICAPWNGHE 374 (545)
Q Consensus 300 ----~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-v~vddva~ai~~~~~~~~~ 374 (545)
.++++++++||.|.++. . . ... ......... + ...+ ..++|+|++++.++.....
T Consensus 211 e~~~~gI~vn~v~PG~v~t~~-~----~-----~~~-~~~~~~~~~----p-----~~r~~~~pedvA~~v~~l~s~~~~ 270 (288)
T 2x9g_A 211 ELAPYGIRVNGVAPGVSLLPV-A----M-----GEE-EKDKWRRKV----P-----LGRREASAEQIADAVIFLVSGSAQ 270 (288)
T ss_dssp HHGGGTEEEEEEEESSCSCCT-T----S-----CHH-HHHHHHHTC----T-----TTSSCCCHHHHHHHHHHHHSGGGT
T ss_pred HhhccCeEEEEEEeccccCcc-c----c-----ChH-HHHHHHhhC----C-----CCCCCCCHHHHHHHHHHHhCcccc
Confidence 58999999999998763 1 0 011 111111111 0 1124 6889999999998865332
Q ss_pred ccCCCCCCCCEEEeecC
Q psy16252 375 RFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 375 ~~~~~~~~~~vy~i~~~ 391 (545)
...+.++++.++
T Consensus 271 -----~itG~~i~vdGG 282 (288)
T 2x9g_A 271 -----YITGSIIKVDGG 282 (288)
T ss_dssp -----TCCSCEEEESTT
T ss_pred -----CccCCEEEECcc
Confidence 234778887765
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-15 Score=143.41 Aligned_cols=222 Identities=9% Similarity=0.036 Sum_probs=147.5
Q ss_pred hcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+||||+ |+||.+++++|++.|. +|+++.|..... ..+.+.++... . ..+..++. |++
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G~---~v~~~~~~~~~~-~~~~~~~l~~~----~-~~~~~~~~~Dl~----- 83 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGA---AVAITYASRAQG-AEENVKELEKT----Y-GIKAKAYKCQVD----- 83 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTSC---EEEECBSSSSSH-HHHHHHHHHHH----H-CCCEECCBCCTT-----
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCC---eEEEEeCCcchh-HHHHHHHHHHh----c-CCceeEEecCCC-----
Confidence 468999999999 9999999999999875 677777765431 12222221110 0 12333444 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.++++.+++ .+|+|||+||... ..+.++..+++|+.|+.++++++... .+..++|++||..
T Consensus 84 -~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~ 162 (267)
T 3gdg_A 84 -SYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMS 162 (267)
T ss_dssp -CHHHHHHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEcccc
Confidence 5666666654 5799999999753 23567888999999999999987331 2456999999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPS 310 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~ 310 (545)
+..... + .....|+.||+..+.+.+.++ ..+++..+.||
T Consensus 163 ~~~~~~-------~------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG 205 (267)
T 3gdg_A 163 GHIANF-------P------------------------------QEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPG 205 (267)
T ss_dssp GTSCCS-------S------------------------------SCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEC
T ss_pred ccccCC-------C------------------------------CCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECC
Confidence 643210 0 011679999999999998765 34899999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|..+.... . .......... ......+..++|+|++++.++..... ...+.++++.+
T Consensus 206 ~v~t~~~~~-------~--~~~~~~~~~~---------~~~~~r~~~~~dva~~~~~l~s~~~~-----~itG~~i~vdg 262 (267)
T 3gdg_A 206 YIDTGLSDF-------V--PKETQQLWHS---------MIPMGRDGLAKELKGAYVYFASDAST-----YTTGADLLIDG 262 (267)
T ss_dssp CEECSCGGG-------S--CHHHHHHHHT---------TSTTSSCEETHHHHHHHHHHHSTTCT-----TCCSCEEEEST
T ss_pred ccccchhhh-------C--CHHHHHHHHh---------cCCCCCCcCHHHHHhHhheeecCccc-----cccCCEEEECC
Confidence 987642211 1 1112111111 12233567899999999988765332 23578998887
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 263 G 263 (267)
T 3gdg_A 263 G 263 (267)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=142.97 Aligned_cols=198 Identities=14% Similarity=0.108 Sum_probs=118.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh---cCCCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF---TCSTSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~---~~~~~~~-Dl~~~~l 170 (545)
.++|+|+||||+|+||.+++++|++.|+ +|++..|+.. ++..... .+.. ....++. |++++
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~---~V~~~~r~~~------~~~~~~~----~l~~~~~~~~~~~~~Dl~~~-- 74 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI---MVVLTCRDVT------KGHEAVE----KLKNSNHENVVFHQLDVTDP-- 74 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHTTTCCSEEEEECCTTSC--
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCCceEEEEccCCCc--
Confidence 5689999999999999999999999875 7888888742 2222111 1211 1233444 88843
Q ss_pred CCCHHHHHHHh-------cCccEEEEccccccc-------------------------------------hHHHHHHHHH
Q psy16252 171 GLSPDDKRLVT-------SKVNLVFHCAATLRF-------------------------------------DEELKEAIRT 206 (545)
Q Consensus 171 gl~~~~~~~l~-------~~vd~Vih~Aa~~~~-------------------------------------~~~~~~~~~~ 206 (545)
.+.+..++ .++|+||||||.... .+.++..+++
T Consensus 75 ---~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (311)
T 3o26_A 75 ---IATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKI 151 (311)
T ss_dssp ---HHHHHHHHHHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheee
Confidence 13444333 379999999997531 2345677899
Q ss_pred hHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCc---cccccc-CCCCCHHHHHHhhhccCCchhHHHhhh--hhc
Q psy16252 207 NMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKN---IEEIIY-KAHTHYSELLKISKLDVDDPKYQETRE--RLS 277 (545)
Q Consensus 207 Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~---i~E~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 277 (545)
|+.|+.++++++... .+..++|++||..+...... ..+... .........-.... ........ ...
T Consensus 152 N~~g~~~l~~~~~~~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 226 (311)
T 3o26_A 152 NYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVN-----MLLKDFKENLIET 226 (311)
T ss_dssp HTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHH-----HHHHHHHTTCTTT
T ss_pred eeehHHHHHHHhhHhhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHH-----HHHhhhhcccccc
Confidence 999999999887641 24579999999876532110 000000 00000000000000 00000000 001
Q ss_pred CCC---CchHHHHHHHHHHHHHHhc---cCCCEEEEccceeecc
Q psy16252 278 HEN---MNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVIST 315 (545)
Q Consensus 278 ~~~---~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~ 315 (545)
..+ ...|+.||+..+.+.+.++ .++++..+.||.|..+
T Consensus 227 ~~~~~~~~~Y~~SK~a~~~~~~~la~e~~~i~v~~v~PG~v~T~ 270 (311)
T 3o26_A 227 NGWPSFGAAYTTSKACLNAYTRVLANKIPKFQVNCVCPGLVKTE 270 (311)
T ss_dssp TTCCSSCHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCSBCSG
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhhcCCceEEEecCCceecC
Confidence 122 2679999999999998876 5799999999998654
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.2e-15 Score=140.64 Aligned_cols=220 Identities=11% Similarity=0.070 Sum_probs=137.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH-
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD- 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~- 176 (545)
|+|+||||+|+||+++++.|++.|+ +|+++.|+.... +.+.. +.. ...+.. -+ +++ +.+.
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~---~~~~~-l~~-------~~~~~~-~~-d~~---~v~~~ 62 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGH---TVACHDESFKQK---DELEA-FAE-------TYPQLK-PM-SEQ---EPAEL 62 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGSH---HHHHH-HHH-------HCTTSE-EC-CCC---SHHHH
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHH---HHHHH-HHh-------cCCcEE-EE-CHH---HHHHH
Confidence 6899999999999999999999875 688888875321 11211 110 011110 01 110 1111
Q ss_pred HH---HHhcCccEEEEccccc-c-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCcc
Q psy16252 177 KR---LVTSKVNLVFHCAATL-R-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKNI 242 (545)
Q Consensus 177 ~~---~l~~~vd~Vih~Aa~~-~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~i 242 (545)
++ +.+.++|+||||||.. . ..+.++..+++|+.|+.++++++... .+..++|++||..+....
T Consensus 63 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--- 139 (254)
T 1zmt_A 63 IEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW--- 139 (254)
T ss_dssp HHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC---
T ss_pred HHHHHHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCC---
Confidence 12 2234799999999975 2 12457888999999999999887531 245799999998765321
Q ss_pred cccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCC
Q psy16252 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 243 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~ 317 (545)
.....|+.||+..+.+.+.++ .++++++++||.|+|+..
T Consensus 140 ------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~ 183 (254)
T 1zmt_A 140 ------------------------------------KELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDS 183 (254)
T ss_dssp ------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTC
T ss_pred ------------------------------------CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccc
Confidence 112679999999999988765 589999999999987642
Q ss_pred CCCCCCccCccc-hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 318 EPIPGWIDNLYG-PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 318 ~~~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.... ...+.. ........... .....+..++|+|++++.++..... ...+.++++.++
T Consensus 184 ~~~~--~T~~~~~~~~~~~~~~~~---------~p~~~~~~p~dvA~~v~~l~s~~~~-----~~tG~~~~vdgG 242 (254)
T 1zmt_A 184 PYFY--PTEPWKTNPEHVAHVKKV---------TALQRLGTQKELGELVAFLASGSCD-----YLTGQVFWLAGG 242 (254)
T ss_dssp CSSC--BHHHHTTCHHHHHHHHHH---------SSSSSCBCHHHHHHHHHHHHTTSCG-----GGTTCEEEESTT
T ss_pred cccC--CCcccccChHHHHHHhcc---------CCCCCCcCHHHHHHHHHHHhCcccC-----CccCCEEEECCC
Confidence 2110 000000 00111111110 0112367899999999988765432 124788888776
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-15 Score=139.65 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=137.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||+++++.|++.|+ +|+++.|+. ++++.... .++. ....++. |++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~------~~~~~~~~----~l~~~~~~~~~~~~Dv~----- 66 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGA---AVAIAARRV------EKLRALGD----ELTAAGAKVHVLELDVA----- 66 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HHHhcCCcEEEEECCCC-----
Confidence 5689999999999999999999999975 688888863 22222211 1111 1223334 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... .+ .++|++||..
T Consensus 67 -~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~ 144 (247)
T 2jah_A 67 -DRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIA 144 (247)
T ss_dssp -CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHH
Confidence 5666666554 7899999999753 13557788999999999999987642 23 6999999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..+.+.+.++ .|+++++++|
T Consensus 145 ~~~~~---------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~P 185 (247)
T 2jah_A 145 GRVNV---------------------------------------RNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEP 185 (247)
T ss_dssp GTCCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred hcCCC---------------------------------------CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEC
Confidence 65321 112579999999888887654 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
|.|.++.... ... ... ...... .+ ..+.++..+|+|++++.++....
T Consensus 186 G~v~T~~~~~-------~~~-~~~-~~~~~~----~~----~~~~~~~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 186 GTTDTELRGH-------ITH-TAT-KEMYEQ----RI----SQIRKLQAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp CSBSSSGGGG-------CCC-HHH-HHHHHH----HT----TTSCCBCHHHHHHHHHHHHHSCT
T ss_pred CCCCCcchhc-------ccc-hhh-HHHHHh----cc----cccCCCCHHHHHHHHHHHhCCCc
Confidence 9997653211 000 111 110000 01 11225899999999998876543
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=140.33 Aligned_cols=214 Identities=8% Similarity=0.047 Sum_probs=143.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCH-HHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP-QQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~l 170 (545)
+++|+++||||+|+||++++++|++.|+ +|+++.|+...... .+.+++... .+... ...++. |++
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Dv~---- 75 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGA---NVALVAKSAEPHPKLPGTIYTAAK----EIEEAGGQALPIVGDIR---- 75 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTC---EEEEEESCCSCCSSSCCCHHHHHH----HHHHHTSEEEEEECCTT----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECChhhhhhhhHHHHHHHH----HHHhcCCcEEEEECCCC----
Confidence 4689999999999999999999999875 78889998653211 111221111 11111 223344 888
Q ss_pred CCCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|++|||||.... .+.++..+++|+.|+.++++++... .+..++|++||.
T Consensus 76 --~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~ 153 (285)
T 3sc4_A 76 --DGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPP 153 (285)
T ss_dssp --SHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCC
T ss_pred --CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCh
Confidence 5666666655 78999999997531 3567788899999999999988753 134699999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+..... .....|+.||+..+.+.+.++ .++++..++
T Consensus 154 ~~~~~~~--------------------------------------~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~ 195 (285)
T 3sc4_A 154 IRLEPKW--------------------------------------LRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLW 195 (285)
T ss_dssp CCCSGGG--------------------------------------SCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEE
T ss_pred hhccCCC--------------------------------------CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEe
Confidence 6543210 112679999999999887765 689999999
Q ss_pred cce-eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 309 PSI-VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 309 p~~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
||. +-. .+........ .....+...+|+|++++.++..... ..++.+.
T Consensus 196 PG~~v~t-----------------~~~~~~~~~~--------~~~~r~~~pedvA~~~~~l~s~~~~------~tG~~i~ 244 (285)
T 3sc4_A 196 PRTTVAT-----------------AAVQNLLGGD--------EAMARSRKPEVYADAAYVVLNKPSS------YTGNTLL 244 (285)
T ss_dssp CSSCBCC-----------------HHHHHHHTSC--------CCCTTCBCTHHHHHHHHHHHTSCTT------CCSCEEE
T ss_pred CCCcccc-----------------HHHHhhcccc--------ccccCCCCHHHHHHHHHHHhCCccc------ccceEEE
Confidence 984 422 1222221111 1123467889999999998865432 1355555
Q ss_pred eec
Q psy16252 388 YVN 390 (545)
Q Consensus 388 i~~ 390 (545)
+.+
T Consensus 245 ~dg 247 (285)
T 3sc4_A 245 CED 247 (285)
T ss_dssp HHH
T ss_pred EcC
Confidence 443
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-14 Score=138.63 Aligned_cols=223 Identities=13% Similarity=0.040 Sum_probs=143.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe-cCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC--
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV-RAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL-- 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~-R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l-- 170 (545)
+++|+++||||+|+||+++++.|++.|+ +|+++. |+. +++......+-... .....++. |+++++-
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~~r~~------~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~ 76 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGY---AVCLHYHRSA------AEANALSATLNARR-PNSAITVQADLSNVATAP 76 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH------HHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEcCCCH------HHHHHHHHHHhhhc-CCeeEEEEeecCCccccc
Confidence 4689999999999999999999999875 688888 753 22222111110000 11223344 8885430
Q ss_pred ---------CCCHHHHHHHhc-------CccEEEEccccccc---------------------hHHHHHHHHHhHHHHHH
Q psy16252 171 ---------GLSPDDKRLVTS-------KVNLVFHCAATLRF---------------------DEELKEAIRTNMCATQT 213 (545)
Q Consensus 171 ---------gl~~~~~~~l~~-------~vd~Vih~Aa~~~~---------------------~~~~~~~~~~Nv~gt~~ 213 (545)
+-..+++..+++ .+|++|||||.... .+.++..+++|+.|+.+
T Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~ 156 (291)
T 1e7w_A 77 VSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYF 156 (291)
T ss_dssp CC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHH
Confidence 000014444443 78999999997531 44567889999999999
Q ss_pred HHHHHHHc---cC------CceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchH
Q psy16252 214 MLDLAKQC---KN------LKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTY 284 (545)
Q Consensus 214 ll~~a~~~---~~------~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 284 (545)
+++++... .+ ..++|++||..+.... .....|
T Consensus 157 l~~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~~~---------------------------------------~~~~~Y 197 (291)
T 1e7w_A 157 LIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL---------------------------------------LGYTIY 197 (291)
T ss_dssp HHHHHHHHHHTSCGGGSCSCEEEEEECCTTTTSCC---------------------------------------TTCHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEechhhcCCC---------------------------------------CCCchh
Confidence 99987642 13 4789999998765321 112679
Q ss_pred HHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcc-cceeh
Q psy16252 285 TLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKA-DIVPA 358 (545)
Q Consensus 285 ~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~v~v 358 (545)
+.||+..+.+.+.++ .+++++.++||.|..+. . . . .......... . ... -+...
T Consensus 198 ~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~-~-~--------~-~~~~~~~~~~-~--------p~~~r~~~p 257 (291)
T 1e7w_A 198 TMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-D-M--------P-PAVWEGHRSK-V--------PLYQRDSSA 257 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG-G-S--------C-HHHHHHHHTT-C--------TTTTSCBCH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCCc-c-C--------C-HHHHHHHHhh-C--------CCCCCCCCH
Confidence 999999999887765 58999999999986542 1 1 0 1121211111 0 011 36789
Q ss_pred HHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 359 DLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 359 ddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+|+|++++.++..... ...+.++++.++
T Consensus 258 edvA~~v~~l~s~~~~-----~itG~~i~vdGG 285 (291)
T 1e7w_A 258 AEVSDVVIFLCSSKAK-----YITGTCVKVDGG 285 (291)
T ss_dssp HHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred HHHHHHHHHHhCCccc-----CccCcEEEECCC
Confidence 9999999998864332 224778888765
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-15 Score=142.24 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=143.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+++||||+|+||++++++|++.|. +|+++.|+. +++.+.... + .....++. |++ +
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~------~~~~~~~~~----~-~~~~~~~~~Dv~------~ 62 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGA---RVAVLDKSA------ERLRELEVA----H-GGNAVGVVGDVR------S 62 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----T-BTTEEEEECCTT------C
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCH------HHHHHHHHH----c-CCcEEEEEcCCC------C
Confidence 4689999999999999999999999975 688888863 222221111 1 11223333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc------------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEec
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF------------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVST 232 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~------------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS 232 (545)
.+++..+++ .+|++|||||.... .+.++..+++|+.|+.++++++... .+-.++|++||
T Consensus 63 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS 142 (281)
T 3zv4_A 63 LQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTIS 142 (281)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 566655554 67999999997421 1346778899999999999987652 11258999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEc
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFR 308 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~R 308 (545)
..+.... .....|+.||+..+.+.+.++ +++++..+.
T Consensus 143 ~~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~ 183 (281)
T 3zv4_A 143 NAGFYPN---------------------------------------GGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVA 183 (281)
T ss_dssp GGGTSSS---------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred chhccCC---------------------------------------CCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 8765321 111579999999999998775 459999999
Q ss_pred cceeeccCCCCCCC-CccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 309 PSIVISTWKEPIPG-WIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 309 p~~i~g~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
||.|..+...+... ................. ......+..++|+|++++.++..+.. ....+++++
T Consensus 184 PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~fL~s~~~~----~~itG~~i~ 250 (281)
T 3zv4_A 184 PGGMNTDLRGPSSLGLSEQSISSVPLADMLKS---------VLPIGRMPALEEYTGAYVFFATRGDS----LPATGALLN 250 (281)
T ss_dssp ECSSCC--CCCTTCC--------CCHHHHHHH---------TCTTSSCCCGGGGSHHHHHHHSTTTS----TTCSSCEEE
T ss_pred CCcCcCCcccccccccccccccchhHHHHHHh---------cCCCCCCCCHHHHHHHHHHhhccccc----ccccCcEEE
Confidence 99997763321100 00000000001111111 11123467889999999988873322 123578999
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 251 vdGG 254 (281)
T 3zv4_A 251 YDGG 254 (281)
T ss_dssp ESSS
T ss_pred ECCC
Confidence 8876
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=140.03 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=117.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||++++++|++.|+ +|+++.|+.. ++..... .++.. ...++. |++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~------~~~~~~~----~~~~~~~~~~~~~~D~~----- 66 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGT---AIALLDMNRE------ALEKAEA----SVREKGVEARSYVCDVT----- 66 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHH----HHHTTTSCEEEEECCTT-----
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHH----HHHhcCCcEEEEEecCC-----
Confidence 4689999999999999999999999975 6888888632 2222111 11111 222333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEccccc-c-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATL-R-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~-~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.+++..+++ ++|+||||||.. . ..+.++..+++|+.|+.++++++... .+..++|++||.
T Consensus 67 -~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~ 145 (262)
T 1zem_A 67 -SEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASM 145 (262)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcch
Confidence 5566665554 789999999965 2 13557888999999999999887652 245799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+..... ....|+.||+..+.+.+.++ .++++++++
T Consensus 146 ~~~~~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~ 186 (262)
T 1zem_A 146 AGVKGPP---------------------------------------NMAAYGTSKGAIIALTETAALDLAPYNIRVNAIS 186 (262)
T ss_dssp HHHSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhccCCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEe
Confidence 7653211 11579999998888877654 689999999
Q ss_pred cceeecc
Q psy16252 309 PSIVIST 315 (545)
Q Consensus 309 p~~i~g~ 315 (545)
||.|..+
T Consensus 187 PG~v~t~ 193 (262)
T 1zem_A 187 PGYMGPG 193 (262)
T ss_dssp ECSBCSS
T ss_pred cCCcCcc
Confidence 9988654
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=139.65 Aligned_cols=201 Identities=12% Similarity=0.056 Sum_probs=131.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl 172 (545)
++ |+++||||+|+||++++++|++.|+ +|+++.|+. ++++.... .+.. ....++. |++
T Consensus 20 ~~-k~vlVTGas~gIG~aia~~La~~G~---~V~~~~r~~------~~~~~~~~----~~~~~~~~~~~~~Dv~------ 79 (272)
T 2nwq_A 20 MS-STLFITGATSGFGEACARRFAEAGW---SLVLTGRRE------ERLQALAG----ELSAKTRVLPLTLDVR------ 79 (272)
T ss_dssp -C-CEEEESSTTTSSHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHTTTSCEEEEECCTT------
T ss_pred cC-cEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HhhcCCcEEEEEcCCC------
Confidence 45 8999999999999999999999875 688888863 22222111 1111 1223334 888
Q ss_pred CHHHHHHHhcC-------ccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCc-eEEEEecc
Q psy16252 173 SPDDKRLVTSK-------VNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQC---KNLK-MFTYVSTA 233 (545)
Q Consensus 173 ~~~~~~~l~~~-------vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~-~~v~vSS~ 233 (545)
+.+++..+++. +|+|||+||.... .+.++..+++|+.|+.++++.+... .+.. ++|++||.
T Consensus 80 d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~ 159 (272)
T 2nwq_A 80 DRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSV 159 (272)
T ss_dssp CHHHHHHHHHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence 66777777754 5999999997532 3567888999999988887776531 1446 99999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..|.+.+.++ .++++++++
T Consensus 160 ~~~~~~---------------------------------------~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~ 200 (272)
T 2nwq_A 160 AGKWPY---------------------------------------PGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLE 200 (272)
T ss_dssp GGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEE
T ss_pred hhccCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEE
Confidence 765321 111579999999999998765 579999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~ 372 (545)
||.|.++..... ........ ..... ...++..+|+|++++.++...
T Consensus 201 PG~v~T~~~~~~------~~~~~~~~--------~~~~~----~~~~~~pedvA~~v~~l~s~~ 246 (272)
T 2nwq_A 201 PGLCESEFSLVR------FGGDQARY--------DKTYA----GAHPIQPEDIAETIFWIMNQP 246 (272)
T ss_dssp ECSBC--------------------------------------CCCCBCHHHHHHHHHHHHTSC
T ss_pred cCCCcCcchhcc------cccchHHH--------HHhhc----cCCCCCHHHHHHHHHHHhCCC
Confidence 999976521100 00000000 00000 112478999999999888654
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-15 Score=146.79 Aligned_cols=168 Identities=13% Similarity=0.072 Sum_probs=117.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh--hcCCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK--FTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~--~~~~~~~~-Dl~~~~lgl~ 173 (545)
+|+|+||||+|+||++++++|++.|+. |+++.|............... .... .....++. |++ +
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~---v~~v~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Dv~------d 68 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQ---SFKVYATLRDLKTQGRLWEAA----RALACPPGSLETLQLDVR------D 68 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTC---CEEEEEEESCGGGTHHHHHHH----HHTTCCTTSEEEEECCTT------C
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCc---eEEEEeecCcHHHHHHHHHHh----hhccCCCCceEEEEecCC------C
Confidence 689999999999999999999999763 555666533221111111000 0000 01223344 888 6
Q ss_pred HHHHHHHhcC-----ccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEeccccccC
Q psy16252 174 PDDKRLVTSK-----VNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 174 ~~~~~~l~~~-----vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~v~~~ 238 (545)
.+++..+++. +|+||||||... ..+.++..+++|+.|+.++++++.. ..+..++|++||..+...
T Consensus 69 ~~~v~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~ 148 (327)
T 1jtv_A 69 SKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMG 148 (327)
T ss_dssp HHHHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccC
Confidence 7788887764 899999999642 1345788899999999999998632 125689999999876532
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.||+..|.+.+.++ .++++++++||.|.
T Consensus 149 ~---------------------------------------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~ 189 (327)
T 1jtv_A 149 L---------------------------------------PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVH 189 (327)
T ss_dssp C---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC
T ss_pred C---------------------------------------CCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccc
Confidence 1 112579999999999988765 58999999999997
Q ss_pred ccC
Q psy16252 314 STW 316 (545)
Q Consensus 314 g~~ 316 (545)
++.
T Consensus 190 T~~ 192 (327)
T 1jtv_A 190 TAF 192 (327)
T ss_dssp C--
T ss_pred ChH
Confidence 653
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=142.77 Aligned_cols=202 Identities=13% Similarity=0.151 Sum_probs=137.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCH-HHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP-QQRIDKMLDTVAISLKFTC--STSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~l 170 (545)
+++|+||||||+|+||.+++++|++.|. +|+++.|+...... ...+.... ..++... ..++. |++
T Consensus 43 l~gk~vlVTGas~GIG~aia~~La~~Ga---~Vvl~~r~~~~~~~l~~~l~~~~----~~~~~~g~~~~~~~~Dv~---- 111 (346)
T 3kvo_A 43 LAGCTVFITGASRGIGKAIALKAAKDGA---NIVIAAKTAQPHPKLLGTIYTAA----EEIEAVGGKALPCIVDVR---- 111 (346)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESCCSCCSSSCCCHHHHH----HHHHHTTCEEEEEECCTT----
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHHCCC---EEEEEECChhhhhhhHHHHHHHH----HHHHhcCCeEEEEEccCC----
Confidence 6789999999999999999999999875 78888888654211 11111111 1111111 22333 888
Q ss_pred CCCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.++++.+++ ++|+||||||.... .+.++..+++|+.|+.++++++... .+..++|++||.
T Consensus 112 --d~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~ 189 (346)
T 3kvo_A 112 --DEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPP 189 (346)
T ss_dssp --CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCC
T ss_pred --CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCH
Confidence 5666666655 78999999997532 3567888999999999999998542 245799999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEcc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRP 309 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp 309 (545)
....... ......|+.||+..+.+.+.++ .++++..+.|
T Consensus 190 ~~~~~~~-------------------------------------~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~P 232 (346)
T 3kvo_A 190 LNLNPVW-------------------------------------FKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWP 232 (346)
T ss_dssp CCCCGGG-------------------------------------TSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred HHcCCCC-------------------------------------CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeC
Confidence 7653210 0112679999999999988765 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccc
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 371 (545)
|.+... .+.... .+ ......+..++|+|++++.++..
T Consensus 233 G~~i~T----------------~~~~~~-~~--------~~~~~r~~~pedvA~~v~~L~s~ 269 (346)
T 3kvo_A 233 KTAIHT----------------AAMDML-GG--------PGIESQCRKVDIIADAAYSIFQK 269 (346)
T ss_dssp SBCBCC----------------HHHHHH-CC----------CGGGCBCTHHHHHHHHHHHTS
T ss_pred CCcccc----------------HHHHhh-cc--------ccccccCCCHHHHHHHHHHHHhc
Confidence 953221 111111 11 11233467899999999999876
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-14 Score=130.48 Aligned_cols=216 Identities=13% Similarity=0.102 Sum_probs=144.9
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+.++||+++||||++.||+++++.|.+.|. +|++..|+....... .......+. |++
T Consensus 7 dlf~GK~alVTGas~GIG~aia~~la~~Ga---~Vv~~~~~~~~~~~~--------------~~~~~~~~~~Dv~----- 64 (242)
T 4b79_A 7 DIYAGQQVLVTGGSSGIGAAIAMQFAELGA---EVVALGLDADGVHAP--------------RHPRIRREELDIT----- 64 (242)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTTSTTSC--------------CCTTEEEEECCTT-----
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHhhh--------------hcCCeEEEEecCC-----
Confidence 447899999999999999999999999975 688888875432210 001112222 888
Q ss_pred CCHHHHHHHhc---CccEEEEccccccc-----hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccCCCc
Q psy16252 172 LSPDDKRLVTS---KVNLVFHCAATLRF-----DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSYRKN 241 (545)
Q Consensus 172 l~~~~~~~l~~---~vd~Vih~Aa~~~~-----~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~~~~ 241 (545)
++++++++++ ++|++|||||.... .+.++..+++|+.|+..+.+++... .+-.++|++||.+.....
T Consensus 65 -~~~~v~~~~~~~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~-- 141 (242)
T 4b79_A 65 -DSQRLQRLFEALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGS-- 141 (242)
T ss_dssp -CHHHHHHHHHHCSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCC--
T ss_pred -CHHHHHHHHHhcCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCC--
Confidence 5566666654 78999999997532 3567889999999999888877542 112689999999765321
Q ss_pred ccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccC
Q psy16252 242 IEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTW 316 (545)
Q Consensus 242 i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~ 316 (545)
.....|+.||+....+.+..+ .|+++..+-||.|-.+.
T Consensus 142 -------------------------------------~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m 184 (242)
T 4b79_A 142 -------------------------------------ADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPL 184 (242)
T ss_dssp -------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-
T ss_pred -------------------------------------CCCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChh
Confidence 112579999999988887765 78999999999996653
Q ss_pred CCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 317 KEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.... .............. + .--+...+|+|++++.++..... --.+.++.+.++
T Consensus 185 ~~~~-------~~~~~~~~~~~~~~-P--------lgR~g~peeiA~~v~fLaSd~a~-----~iTG~~l~VDGG 238 (242)
T 4b79_A 185 GAGL-------KADVEATRRIMQRT-P--------LARWGEAPEVASAAAFLCGPGAS-----FVTGAVLAVDGG 238 (242)
T ss_dssp -----------CCCHHHHHHHHHTC-T--------TCSCBCHHHHHHHHHHHTSGGGT-----TCCSCEEEESTT
T ss_pred hhcc-------cCCHHHHHHHHhcC-C--------CCCCcCHHHHHHHHHHHhCchhc-----CccCceEEECcc
Confidence 2211 11112222222211 0 11255689999999988765432 234778877665
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=137.67 Aligned_cols=203 Identities=12% Similarity=0.072 Sum_probs=135.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCC-HHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS-PQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~-~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~l 170 (545)
+++|+++||||+|+||++++++|++.|. +|++..|+..... ..+.+..... .+... ...++. |++
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Dv~---- 72 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGA---NVAIAAKSAVANPKLPGTIHSAAA----AVNAAGGQGLALKCDIR---- 72 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCCSCCTTSCCCHHHHHH----HHHHHTSEEEEEECCTT----
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeccchhhhhhHHHHHHHHH----HHHhcCCeEEEEeCCCC----
Confidence 4689999999999999999999999975 7888899865321 1111221111 11111 223334 888
Q ss_pred CCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.+++..+++ .+|++|||||... ..+.++..+++|+.|+.++++++... .+..++|++||.
T Consensus 73 --~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~ 150 (274)
T 3e03_A 73 --EEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPP 150 (274)
T ss_dssp --CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCC
T ss_pred --CHHHHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECCh
Confidence 5666666654 7899999999752 13567888999999999999987652 244689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+..... . .....|+.||+..+.+.+.++ .++++..+.
T Consensus 151 ~~~~~~~--------------------------------~-----~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~ 193 (274)
T 3e03_A 151 PSLNPAW--------------------------------W-----GAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALW 193 (274)
T ss_dssp CCCCHHH--------------------------------H-----HHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred HhcCCCC--------------------------------C-----CCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEE
Confidence 6543200 0 001579999999999887765 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
||.+... + +.. .. .......+...+|+|++++.++....
T Consensus 194 PG~~v~T---~-------------~~~-~~---------~~~~~~~~~~pedvA~~v~~l~s~~~ 232 (274)
T 3e03_A 194 PRTVIAT---D-------------AIN-ML---------PGVDAAACRRPEIMADAAHAVLTREA 232 (274)
T ss_dssp CSBCBCC---------------------------------CCCGGGSBCTHHHHHHHHHHHTSCC
T ss_pred CCccccc---c-------------hhh-hc---------ccccccccCCHHHHHHHHHHHhCccc
Confidence 9943221 0 000 00 01112336789999999999886543
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.3e-15 Score=153.52 Aligned_cols=224 Identities=17% Similarity=0.203 Sum_probs=152.6
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPD 169 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~ 169 (545)
.+..+++||||||||+||.+++++|++.|. .+|+++.|+.......+.+.. .+... .+.++. |++
T Consensus 255 ~~~~~~~vLITGgtGgIG~~lA~~La~~G~--~~vvl~~R~~~~~~~~~~l~~-------~l~~~g~~v~~~~~Dvt--- 322 (511)
T 2z5l_A 255 SWQPSGTVLITGGMGAIGRRLARRLAAEGA--ERLVLTSRRGPEAPGAAELAE-------ELRGHGCEVVHAACDVA--- 322 (511)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHTTC--SEEEEEESSGGGSTTHHHHHH-------HHHTTTCEEEEEECCSS---
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHhCCC--cEEEEEecCCcccHHHHHHHH-------HHHhcCCEEEEEEeCCC---
Confidence 355689999999999999999999998864 368888887543221222211 12211 233344 888
Q ss_pred CCCCHHHHHHHhcC--ccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC
Q psy16252 170 LGLSPDDKRLVTSK--VNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 170 lgl~~~~~~~l~~~--vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~ 240 (545)
+.+.+..++++ +|+|||+||.... .+.++..+++|+.|+.++.+++....++++||++||..+....
T Consensus 323 ---d~~~v~~~~~~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~- 398 (511)
T 2z5l_A 323 ---ERDALAALVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGN- 398 (511)
T ss_dssp ---CHHHHHHHHHHSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCC-
T ss_pred ---CHHHHHHHHhcCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCC-
Confidence 67888888875 9999999997642 2456778899999999999988764367899999998653211
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCCCC
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWKEP 319 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~~~ 319 (545)
.....|+.+|...|.+.+... .|+++++++||.+.+.
T Consensus 399 --------------------------------------~g~~~YaaaKa~ld~la~~~~~~gi~v~sv~pG~~~~t---- 436 (511)
T 2z5l_A 399 --------------------------------------AGQGAYAAANAALDALAERRRAAGLPATSVAWGLWGGG---- 436 (511)
T ss_dssp --------------------------------------TTBHHHHHHHHHHHHHHHHHHTTTCCCEEEEECCBCST----
T ss_pred --------------------------------------CCCHHHHHHHHHHHHHHHHHHHcCCcEEEEECCcccCC----
Confidence 111679999999999998766 8999999999987321
Q ss_pred CCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHH
Q psy16252 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWG 399 (545)
Q Consensus 320 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~ 399 (545)
+..... .. .... ...+..++.+++++++..++..... .+.+. .+.|.
T Consensus 437 --gm~~~~---~~--~~~~-----------~~g~~~l~~e~~a~~l~~al~~~~~----------~v~v~-----~~d~~ 483 (511)
T 2z5l_A 437 --GMAAGA---GE--ESLS-----------RRGLRAMDPDAAVDALLGAMGRNDV----------CVTVV-----DVDWE 483 (511)
T ss_dssp --TCCCCH---HH--HHHH-----------HHTBCCBCHHHHHHHHHHHHHHTCS----------EEEEC-----CBCHH
T ss_pred --cccccc---cH--HHHH-----------hcCCCCCCHHHHHHHHHHHHhCCCC----------EEEEE-----eCCHH
Confidence 111110 00 1110 1123468899999999999875543 22222 36787
Q ss_pred HHHHHHHH
Q psy16252 400 EFITKSLK 407 (545)
Q Consensus 400 el~~~l~~ 407 (545)
.+...+..
T Consensus 484 ~~~~~~~~ 491 (511)
T 2z5l_A 484 RFAPATNA 491 (511)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhcc
Confidence 77665543
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=140.83 Aligned_cols=211 Identities=14% Similarity=0.133 Sum_probs=134.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC---CHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ---SPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~---~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lg 171 (545)
+++|+|+||||+|+||+++++.|++.|+ +|++..|..... ...++++.... .++........|+++
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~Ga---~Vv~~~~~~~~~~~~R~~~~~~~~~~----~l~~~~~~~~~D~~~---- 75 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERGA---LVVVNDLGGDFKGVGKGSSAADKVVE----EIRRRGGKAVANYDS---- 75 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECCCBCTTSCBCCSHHHHHHHH----HHHHTTCEEEEECCC----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCCcccccccCCHHHHHHHHH----HHHhhCCeEEEeCCC----
Confidence 4689999999999999999999999975 677765532100 00112222111 111111111126663
Q ss_pred CCHHHHHHH-------hcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLV-------TSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l-------~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
.+++..+ +.++|+||||||.... .+.++..+++|+.|+.++++++... .+..++|++||..
T Consensus 76 --~~~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~ 153 (319)
T 1gz6_A 76 --VEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASAS 153 (319)
T ss_dssp --GGGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHH
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChh
Confidence 3333333 3479999999997532 2567888999999999998887431 2457999999975
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... .....|+.||+..+.+.+.++ .++++++++|
T Consensus 154 ~~~~~---------------------------------------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~P 194 (319)
T 1gz6_A 154 GIYGN---------------------------------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAP 194 (319)
T ss_dssp HHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEE
T ss_pred hccCC---------------------------------------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeC
Confidence 43211 011679999999999887764 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.+ .+. ..... + .....++.++|+|.+++.++..... ..+++|++.
T Consensus 195 G~~-t~~-------~~~~~-~-------------------~~~~~~~~p~dvA~~~~~l~s~~~~------~tG~~~~v~ 240 (319)
T 1gz6_A 195 NAG-SRM-------TETVM-P-------------------EDLVEALKPEYVAPLVLWLCHESCE------ENGGLFEVG 240 (319)
T ss_dssp ECC-STT-------TGGGS-C-------------------HHHHHHSCGGGTHHHHHHHTSTTCC------CCSCEEEEE
T ss_pred CCc-ccc-------ccccC-C-------------------hhhhccCCHHHHHHHHHHHhCchhh------cCCCEEEEC
Confidence 986 211 00000 0 0112346889999999988765322 247788887
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 241 GG 242 (319)
T 1gz6_A 241 AG 242 (319)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=136.73 Aligned_cols=216 Identities=11% Similarity=0.048 Sum_probs=134.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEE-e--cCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-V--RAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~--R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~ 173 (545)
+|+++||||+|+||++++++|++.|+ +|+++ . |+. +++..... .+ ... |+.+++ +
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~~~~r~~------~~~~~~~~----~~--~~~----~~~~~~---~ 58 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGY---TVVCHDASFADA------AERQRFES----EN--PGT----IALAEQ---K 58 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGSH------HHHHHHHH----HS--TTE----EECCCC---C
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCCcCCH------HHHHHHHH----Hh--CCC----cccCHH---H
Confidence 47899999999999999999999975 68877 5 753 22222111 11 001 222111 1
Q ss_pred H-HHHHHHh---cCccEEEEccccccc----------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 P-DDKRLVT---SKVNLVFHCAATLRF----------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~-~~~~~l~---~~vd~Vih~Aa~~~~----------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
. ..++.+. .++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..+.
T Consensus 59 v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~ 138 (244)
T 1zmo_A 59 PERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGK 138 (244)
T ss_dssp GGGHHHHHGGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhC
Confidence 1 2233332 378999999996543 2567888999999999999887631 245799999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..+.+.+.++ .++++++++||.
T Consensus 139 ~~~~---------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~ 179 (244)
T 1zmo_A 139 KPLA---------------------------------------YNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNF 179 (244)
T ss_dssp SCCT---------------------------------------TCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred CCCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCC
Confidence 3211 11579999999999987764 589999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|-.+.... | ..... ........... . + ...+...+|+|++++.++..... ...+.++.+.++
T Consensus 180 v~T~~~~~---~-~~~~~-~~~~~~~~~~~---~---p--~~r~~~pe~vA~~v~~l~s~~~~-----~~tG~~i~vdgG 241 (244)
T 1zmo_A 180 FNNPTYFP---T-SDWEN-NPELRERVDRD---V---P--LGRLGRPDEMGALITFLASRRAA-----PIVGQFFAFTGG 241 (244)
T ss_dssp BCBTTTBC---H-HHHHH-CHHHHHHHHHH---C---T--TCSCBCHHHHHHHHHHHHTTTTG-----GGTTCEEEESTT
T ss_pred CcCCcccc---c-ccccc-hHHHHHHHhcC---C---C--CCCCcCHHHHHHHHHHHcCcccc-----CccCCEEEeCCC
Confidence 86542100 0 00000 01111111000 0 0 11367899999999988765332 124677777664
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-13 Score=127.07 Aligned_cols=220 Identities=10% Similarity=0.043 Sum_probs=145.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lg 171 (545)
++||+++||||++.||+++++.|.+.|. +|++..|+. +++++... .++....+ .+. |++
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga---~Vv~~~~~~------~~~~~~~~----~i~~~g~~~~~~~~Dvt----- 66 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS---IVVAVELLE------DRLNQIVQ----ELRGMGKEVLGVKADVS----- 66 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCH------HHHHHHHH----HHHhcCCcEEEEEccCC-----
Confidence 5799999999999999999999999865 678887763 23333222 22222333 233 998
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc----c----hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR----F----DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~----~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
++++++.+++ ++|++|||||... + .+.++..+++|+.|+..+.+++... .+-.++|++||.
T Consensus 67 -~~~~v~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ 145 (254)
T 4fn4_A 67 -KKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASI 145 (254)
T ss_dssp -SHHHHHHHHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEech
Confidence 5666666553 6899999999642 2 3567889999999999988877542 234689999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
+..... .....|+.||+....+.+..+ .|+++..+-
T Consensus 146 ~g~~~~---------------------------------------~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~ 186 (254)
T 4fn4_A 146 AGIRGG---------------------------------------FAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVL 186 (254)
T ss_dssp GGTCSS---------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhcCCC---------------------------------------CCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEE
Confidence 765321 112579999998888887765 789999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|-.+.... ................. +- --+...+|+|++++.++..... --.++++.+
T Consensus 187 PG~i~T~~~~~------~~~~~~~~~~~~~~~~~------~~--~R~g~pediA~~v~fLaSd~a~-----~iTG~~i~V 247 (254)
T 4fn4_A 187 PGTVKTNIGLG------SSKPSELGMRTLTKLMS------LS--SRLAEPEDIANVIVFLASDEAS-----FVNGDAVVV 247 (254)
T ss_dssp ECSBCSSCTTS------CSSCCHHHHHHHHHHHT------TC--CCCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eCCCCCccccc------ccCCcHHHHHHHHhcCC------CC--CCCcCHHHHHHHHHHHhCchhc-----CCcCCEEEe
Confidence 99986542211 01111111111111000 00 1245689999999988765432 234778887
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 248 DGG 250 (254)
T 4fn4_A 248 DGG 250 (254)
T ss_dssp STT
T ss_pred CCC
Confidence 765
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-14 Score=145.86 Aligned_cols=217 Identities=15% Similarity=0.085 Sum_probs=141.5
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
..+++++++||||+|.||.++++.|++.|. +|+++.|+.. .+.+...... ....++. |++++
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga---~Vvl~~r~~~----~~~l~~~~~~-------~~~~~~~~Dvtd~--- 271 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGA---TVVAIDVDGA----AEDLKRVADK-------VGGTALTLDVTAD--- 271 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECGGG----HHHHHHHHHH-------HTCEEEECCTTST---
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCC---EEEEEeCCcc----HHHHHHHHHH-------cCCeEEEEecCCH---
Confidence 345789999999999999999999999865 6888887632 2222222111 1233444 88844
Q ss_pred CCHHHHHHHhc-------C-ccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------K-VNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~-vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
++++.+++ + +|+||||||.... .+.++..+++|+.|+.++.+++... .+..+||++||.
T Consensus 272 ---~~v~~~~~~~~~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~ 348 (454)
T 3u0b_A 272 ---DAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSM 348 (454)
T ss_dssp ---THHHHHHHHHHHHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCH
T ss_pred ---HHHHHHHHHHHHHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeCh
Confidence 34444432 3 9999999998632 3567888999999999999998863 145699999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
...... .....|+.||...+.+.+..+ .+++++.+.
T Consensus 349 a~~~g~---------------------------------------~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~ 389 (454)
T 3u0b_A 349 AGIAGN---------------------------------------RGQTNYATTKAGMIGLAEALAPVLADKGITINAVA 389 (454)
T ss_dssp HHHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HhCCCC---------------------------------------CCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEE
Confidence 764321 112679999996666665543 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|.++.....+.. . ...... . .....+...+|+|++++.++..... ...+.++++
T Consensus 390 PG~v~T~~~~~~~~~---~---~~~~~~----~--------~~l~r~g~pedvA~~v~fL~s~~a~-----~itG~~i~v 446 (454)
T 3u0b_A 390 PGFIETKMTEAIPLA---T---REVGRR----L--------NSLFQGGQPVDVAELIAYFASPASN-----AVTGNTIRV 446 (454)
T ss_dssp ECSBCC----------------CHHHHH----S--------BTTSSCBCHHHHHHHHHHHHCGGGT-----TCCSCEEEE
T ss_pred cCcccChhhhhcchh---h---HHHHHh----h--------ccccCCCCHHHHHHHHHHHhCCccC-----CCCCcEEEE
Confidence 999876532211100 0 000000 0 0112245789999999988764432 235788888
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 447 dGG 449 (454)
T 3u0b_A 447 CGQ 449 (454)
T ss_dssp SSS
T ss_pred CCc
Confidence 765
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.4e-14 Score=133.65 Aligned_cols=166 Identities=17% Similarity=0.104 Sum_probs=115.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHh---hCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLR---SFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~---~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l 170 (545)
+++|+++||||+|+||++++++|++ .|+ +|+++.|+. +++......+-.........++. |++
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~---~V~~~~r~~------~~~~~~~~~l~~~~~~~~~~~~~~Dv~---- 70 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS---VMLVSARSE------SMLRQLKEELGAQQPDLKVVLAAADLG---- 70 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC---EEEEEESCH------HHHHHHHHHHHHHCTTSEEEEEECCTT----
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC---eEEEEeCCH------HHHHHHHHHHHhhCCCCeEEEEecCCC----
Confidence 4689999999999999999999998 665 788888863 22222211110000011223344 888
Q ss_pred CCCHHHHHHHhc---------Ccc--EEEEcccccc----------chHHHHHHHHHhHHHHHHHHHHHHHcc-----CC
Q psy16252 171 GLSPDDKRLVTS---------KVN--LVFHCAATLR----------FDEELKEAIRTNMCATQTMLDLAKQCK-----NL 224 (545)
Q Consensus 171 gl~~~~~~~l~~---------~vd--~Vih~Aa~~~----------~~~~~~~~~~~Nv~gt~~ll~~a~~~~-----~~ 224 (545)
+.+++..+++ .+| ++|||||... ..+.++..+++|+.|+.++++++...- +.
T Consensus 71 --~~~~v~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~ 148 (259)
T 1oaa_A 71 --TEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLS 148 (259)
T ss_dssp --SHHHHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCE
T ss_pred --CHHHHHHHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 5556555543 457 9999999642 135678889999999999999987631 23
Q ss_pred ceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cC
Q psy16252 225 KMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QF 301 (545)
Q Consensus 225 ~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~ 301 (545)
.++|++||..+.... .....|+.||+..+.+.+.++ .+
T Consensus 149 g~iv~isS~~~~~~~---------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~ 189 (259)
T 1oaa_A 149 KTVVNISSLCALQPY---------------------------------------KGWGLYCAGKAARDMLYQVLAAEEPS 189 (259)
T ss_dssp EEEEEECCGGGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ceEEEEcCchhcCCC---------------------------------------CCccHHHHHHHHHHHHHHHHHhhCCC
Confidence 579999999775321 112679999999999998876 45
Q ss_pred CCEEEEccceeec
Q psy16252 302 FPVCIFRPSIVIS 314 (545)
Q Consensus 302 l~~~i~Rp~~i~g 314 (545)
+++..+.||.|-.
T Consensus 190 i~vn~v~PG~v~T 202 (259)
T 1oaa_A 190 VRVLSYAPGPLDN 202 (259)
T ss_dssp EEEEEEECCSBSS
T ss_pred ceEEEecCCCcCc
Confidence 8889999988744
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-14 Score=134.40 Aligned_cols=162 Identities=14% Similarity=0.135 Sum_probs=114.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~lg 171 (545)
+++|+++||||+|+||+++++.|++.|+ +|+++.|+. +++..... .++. ....++. |++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~------~~~~~~~~----~~~~~~~~~~~~~~Dv~----- 64 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGA---TVYITGRHL------DTLRVVAQ----EAQSLGGQCVPVVCDSS----- 64 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHHHSSEEEEEECCTT-----
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHH----HHHHcCCceEEEECCCC-----
Confidence 4579999999999999999999999975 688888863 22222111 1111 1223334 887
Q ss_pred CCHHHHHHHh--------cCccEEEEccc--cc--------c----chHHHHHHHHHhHHHHHHHHHHHHH---ccCCce
Q psy16252 172 LSPDDKRLVT--------SKVNLVFHCAA--TL--------R----FDEELKEAIRTNMCATQTMLDLAKQ---CKNLKM 226 (545)
Q Consensus 172 l~~~~~~~l~--------~~vd~Vih~Aa--~~--------~----~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~ 226 (545)
+.+++..++ ..+|++||||| .. . ..+.++..+++|+.++.++.+.+.. ..+..+
T Consensus 65 -~~~~v~~~~~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ 143 (260)
T 2qq5_A 65 -QESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGL 143 (260)
T ss_dssp -SHHHHHHHHHHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCE
T ss_pred -CHHHHHHHHHHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcE
Confidence 455555443 35799999994 21 1 1245678889999999888877653 124579
Q ss_pred EEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cC
Q psy16252 227 FTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QF 301 (545)
Q Consensus 227 ~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~ 301 (545)
+|++||..+.... ....|+.||+..+.+.+.++ .+
T Consensus 144 iv~isS~~~~~~~----------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~g 183 (260)
T 2qq5_A 144 IVVISSPGSLQYM----------------------------------------FNVPYGVGKAACDKLAADCAHELRRHG 183 (260)
T ss_dssp EEEECCGGGTSCC----------------------------------------SSHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEcChhhcCCC----------------------------------------CCCchHHHHHHHHHHHHHHHHHhccCC
Confidence 9999998765321 01579999999999987764 58
Q ss_pred CCEEEEccceeecc
Q psy16252 302 FPVCIFRPSIVIST 315 (545)
Q Consensus 302 l~~~i~Rp~~i~g~ 315 (545)
+++++++||.|..+
T Consensus 184 i~v~~v~PG~v~T~ 197 (260)
T 2qq5_A 184 VSCVSLWPGIVQTE 197 (260)
T ss_dssp CEEEEEECCCSCTT
T ss_pred eEEEEEecCccccH
Confidence 99999999998765
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=7.3e-14 Score=135.21 Aligned_cols=162 Identities=12% Similarity=0.040 Sum_probs=117.0
Q ss_pred hcCcEEEEecc--ccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGA--TGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGa--tGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+++|+|+|||| +|+||+++++.|++.|+ +|+++.|+... .++... ..+ .....++. |++
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~---~V~~~~r~~~~-----~~~~~~----~~~-~~~~~~~~~Dv~----- 66 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGA---QLVLTGFDRLR-----LIQRIT----DRL-PAKAPLLELDVQ----- 66 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTC---EEEEEECSCHH-----HHHHHH----TTS-SSCCCEEECCTT-----
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCC---EEEEEecChHH-----HHHHHH----Hhc-CCCceEEEccCC-----
Confidence 46899999999 99999999999999875 68888886421 111111 111 11233444 887
Q ss_pred CCHHHHHHHhc----------CccEEEEcccccc------------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEE
Q psy16252 172 LSPDDKRLVTS----------KVNLVFHCAATLR------------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFT 228 (545)
Q Consensus 172 l~~~~~~~l~~----------~vd~Vih~Aa~~~------------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v 228 (545)
+.++++.+++ ++|++|||||... ..+.++..+++|+.|+.++++++... ..-.++|
T Consensus 67 -~~~~v~~~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv 145 (269)
T 2h7i_A 67 -NEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIV 145 (269)
T ss_dssp -CHHHHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred -CHHHHHHHHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEE
Confidence 5666666655 7999999999653 13456778999999999999998753 1125899
Q ss_pred EEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCC
Q psy16252 229 YVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFP 303 (545)
Q Consensus 229 ~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~ 303 (545)
++||....+.. ....|+.||+..+.+.+.++ .+++
T Consensus 146 ~iss~~~~~~~----------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~ 185 (269)
T 2h7i_A 146 GMDFDPSRAMP----------------------------------------AYNWMTVAKSALESVNRFVAREAGKYGVR 185 (269)
T ss_dssp EEECCCSSCCT----------------------------------------TTHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred EEcCccccccC----------------------------------------chHHHHHHHHHHHHHHHHHHHHhcccCcE
Confidence 99987643211 11679999999999888765 5899
Q ss_pred EEEEccceeecc
Q psy16252 304 VCIFRPSIVIST 315 (545)
Q Consensus 304 ~~i~Rp~~i~g~ 315 (545)
+.+++||.|..+
T Consensus 186 vn~v~PG~v~T~ 197 (269)
T 2h7i_A 186 SNLVAAGPIRTL 197 (269)
T ss_dssp EEEEEECCCCCH
T ss_pred EEEEecCcccch
Confidence 999999998654
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=130.26 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=144.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|.+.|. +|++..|..... +.++..... ..+..++. |++ +
T Consensus 5 L~gKvalVTGas~GIG~aia~~la~~Ga---~Vv~~~r~~~~~---~~~~~~~~~------~~~~~~~~~Dv~------~ 66 (258)
T 4gkb_A 5 LQDKVVIVTGGASGIGGAISMRLAEERA---IPVVFARHAPDG---AFLDALAQR------QPRATYLPVELQ------D 66 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCCH---HHHHHHHHH------CTTCEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCcccH---HHHHHHHhc------CCCEEEEEeecC------C
Confidence 5789999999999999999999999865 688888876532 222221111 11223333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccC
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~ 238 (545)
+++.+.+++ ++|++|||||... ..+.++..+++|+.|+..+.+++... .+-.++|++||.+....
T Consensus 67 ~~~v~~~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~ 146 (258)
T 4gkb_A 67 DAQCRDAVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTG 146 (258)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccC
Confidence 555555543 7899999999642 23667888999999999988877542 11258999999976432
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.||+..+.+.+..+ .|+++..+-||.|-
T Consensus 147 ~---------------------------------------~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~ 187 (258)
T 4gkb_A 147 Q---------------------------------------GNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVM 187 (258)
T ss_dssp C---------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBC
T ss_pred C---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCC
Confidence 1 112679999999988887765 78999999999986
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.+.... +......+........... + ...-+...+|||++++.++..... .-.++++.+.++
T Consensus 188 T~~~~~---~~~~~~~~~~~~~~~~~~~-p-------lg~R~g~peeiA~~v~fLaS~~a~-----~iTG~~i~VDGG 249 (258)
T 4gkb_A 188 TPLYRN---WIATFEDPEAKLAEIAAKV-P-------LGRRFTTPDEIADTAVFLLSPRAS-----HTTGEWLFVDGG 249 (258)
T ss_dssp CSCC--------------CHHHHHHTTC-T-------TTTSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred ChhHhh---hhhcccChHHHHHHHHhcC-C-------CCCCCcCHHHHHHHHHHHhCchhc-----CccCCeEEECCC
Confidence 653211 1111100111111111110 0 001356789999999988765432 235788888776
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-13 Score=127.95 Aligned_cols=218 Identities=14% Similarity=0.092 Sum_probs=144.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lg 171 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. +++++... .+.....+ .+. |++
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga---~Vvi~~~~~------~~~~~~~~----~l~~~g~~~~~~~~Dv~----- 68 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGA---RVILNDIRA------TLLAESVD----TLTRKGYDAHGVAFDVT----- 68 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEECCSCH------HHHHHHHH----HHHHTTCCEEECCCCTT-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HHHhcCCcEEEEEeeCC-----
Confidence 5799999999999999999999999975 677777753 23333222 12222222 333 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~ 233 (545)
++++++.+++ ++|++|||||.... .+.++..+++|+.|+..+.+.+.. ..+-.++|++||.
T Consensus 69 -~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~ 147 (255)
T 4g81_D 69 -DELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSL 147 (255)
T ss_dssp -CHHHHHHHHHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeeh
Confidence 5666665553 68999999997532 367889999999999999887643 1234689999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
+..... .....|+.||+....+.+..+ .|+++..+-
T Consensus 148 ~~~~~~---------------------------------------~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~ 188 (255)
T 4g81_D 148 TSQAAR---------------------------------------PTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIG 188 (255)
T ss_dssp GGTSBC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhcCCC---------------------------------------CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEe
Confidence 765321 112579999998888887765 789999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|..+.... .............. .+ .--+...+|+|++++.++..... .-.++++.+
T Consensus 189 PG~i~T~~~~~-------~~~~~~~~~~~~~~-~P--------l~R~g~pediA~~v~fL~S~~a~-----~iTG~~i~V 247 (255)
T 4g81_D 189 PGYILTDMNTA-------LIEDKQFDSWVKSS-TP--------SQRWGRPEELIGTAIFLSSKASD-----YINGQIIYV 247 (255)
T ss_dssp ECSBCCGGGHH-------HHTCHHHHHHHHHH-ST--------TCSCBCGGGGHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eCCCCCchhhc-------ccCCHHHHHHHHhC-CC--------CCCCcCHHHHHHHHHHHhCchhC-----CCcCCEEEE
Confidence 99986652111 00001111111111 00 11245678999999888754432 234778887
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 248 DGG 250 (255)
T 4g81_D 248 DGG 250 (255)
T ss_dssp STT
T ss_pred CCC
Confidence 665
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.2e-13 Score=124.50 Aligned_cols=206 Identities=12% Similarity=0.058 Sum_probs=139.4
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|+||||++.||+++++.|++.|. +|++..|+. +++.+.... ......+. |++ +++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga---~V~~~~~~~------~~~~~~~~~------~~~~~~~~~Dv~------~~~ 60 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGD---KVCFIDIDE------KRSADFAKE------RPNLFYFHGDVA------DPL 60 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHTT------CTTEEEEECCTT------SHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHHHHHh------cCCEEEEEecCC------CHH
Confidence 38999999999999999999999975 677777763 222221111 01112233 888 556
Q ss_pred HHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccCC
Q psy16252 176 DKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 176 ~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~~ 239 (545)
+.+.+++ ++|++|||||.... .+.++..+++|+.|+..+.+++... .+-.++|++||..+....
T Consensus 61 ~v~~~v~~~~~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~ 140 (247)
T 3ged_A 61 TLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSE 140 (247)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCC
Confidence 6665543 78999999987532 3668889999999999988877542 122689999998765321
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceeecc
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~g~ 315 (545)
.....|+.||+....+.+..+ +++++..+-||.|-.+
T Consensus 141 ---------------------------------------~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~ 181 (247)
T 3ged_A 141 ---------------------------------------PDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVT 181 (247)
T ss_dssp ---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCC
T ss_pred ---------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCC
Confidence 112579999999888887765 7899999999988543
Q ss_pred CCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
... .+. .... ... | .--+...+|||++++.++.... -.++++.+.++
T Consensus 182 ~~~-------~~~--~~~~----~~~----P-----l~R~g~pediA~~v~fL~s~~~-------iTG~~i~VDGG 228 (247)
T 3ged_A 182 EQQ-------EFT--QEDC----AAI----P-----AGKVGTPKDISNMVLFLCQQDF-------ITGETIIVDGG 228 (247)
T ss_dssp C----------CC--HHHH----HTS----T-----TSSCBCHHHHHHHHHHHHHCSS-------CCSCEEEESTT
T ss_pred CcH-------HHH--HHHH----hcC----C-----CCCCcCHHHHHHHHHHHHhCCC-------CCCCeEEECcC
Confidence 211 111 1111 111 1 1124568999999998876433 25888888776
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-13 Score=126.89 Aligned_cols=223 Identities=12% Similarity=0.099 Sum_probs=144.6
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
.++||+++||||++.||+++++.|++.|. +|++..|+. +++++.... +. .....+. |++
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga---~V~i~~r~~------~~l~~~~~~----~g-~~~~~~~~Dv~------ 85 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGA---RVFITGRRK------DVLDAAIAE----IG-GGAVGIQADSA------ 85 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----HC-TTCEEEECCTT------
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----cC-CCeEEEEecCC------
Confidence 36799999999999999999999999975 688888863 333332221 11 1222333 888
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEecccccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~ 237 (545)
++++++.+++ ++|++|||||... ..+.|+..+++|+.|+..+++++... .+-.++|++||.....
T Consensus 86 ~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~ 165 (273)
T 4fgs_A 86 NLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST 165 (273)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc
Confidence 5566665543 6899999999753 23678899999999999999988752 2225799999987643
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||+....+.+..+ .|+++..+-||.|
T Consensus 166 ~~---------------------------------------~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i 206 (273)
T 4fgs_A 166 GT---------------------------------------PAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPT 206 (273)
T ss_dssp CC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSB
T ss_pred CC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCC
Confidence 21 112579999999988887765 7899999999998
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
-.+......+ ........+........ | .--+...+|+|++++.++..... --.+.++.+.++
T Consensus 207 ~T~~~~~~~~--~~~~~~~~~~~~~~~~~----P-----lgR~g~peeiA~~v~FLaSd~a~-----~iTG~~i~VDGG 269 (273)
T 4fgs_A 207 ETTGLVELAG--KDPVQQQGLLNALAAQV----P-----MGRVGRAEEVAAAALFLASDDSS-----FVTGAELFVDGG 269 (273)
T ss_dssp CC-----------CHHHHHHHHHHHHHHS----T-----TSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred CChhHHHhhc--cCchhhHHHHHHHHhcC----C-----CCCCcCHHHHHHHHHHHhCchhc-----CccCCeEeECcC
Confidence 6542211100 00000011122111110 0 11245679999999988765432 234778877665
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=142.29 Aligned_cols=164 Identities=15% Similarity=0.141 Sum_probs=123.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lgl~ 173 (545)
++++|||||+|+||.++++.|++.|. .+|+++.|+.......+.+... +... .+.++. |++ +
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga--~~vvl~~R~~~~~~~~~~l~~~-------l~~~g~~v~~~~~Dvt------d 303 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGA--AHLVLTSRRGADAPGAAELRAE-------LEQLGVRVTIAACDAA------D 303 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTC--SEEEEEESSGGGSTTHHHHHHH-------HHHTTCEEEEEECCTT------C
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCC--cEEEEEeCCCCChHHHHHHHHH-------HHhcCCeEEEEEccCC------C
Confidence 38999999999999999999999864 4788888875433222222221 1111 223344 888 6
Q ss_pred HHHHHHHhc------CccEEEEccccc-c-------chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC
Q psy16252 174 PDDKRLVTS------KVNLVFHCAATL-R-------FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 174 ~~~~~~l~~------~vd~Vih~Aa~~-~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~ 239 (545)
.+++..+++ .+|+|||+||.. . ..+.++..+++|+.|+.++.+++... ...+||++||.......
T Consensus 304 ~~~v~~~~~~i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~-~~~~iV~~SS~a~~~g~ 382 (496)
T 3mje_A 304 REALAALLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL-DLDAFVLFSSGAAVWGS 382 (496)
T ss_dssp HHHHHHHHHTCCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc-CCCEEEEEeChHhcCCC
Confidence 778887775 489999999976 2 13557888999999999999999886 67899999998654321
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeecc
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVIST 315 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~ 315 (545)
.....|+.+|...+.+.++.. .|++++.+.||.+.+.
T Consensus 383 ---------------------------------------~g~~~YaAaKa~ldala~~~~~~Gi~v~sV~pG~w~~~ 420 (496)
T 3mje_A 383 ---------------------------------------GGQPGYAAANAYLDALAEHRRSLGLTASSVAWGTWGEV 420 (496)
T ss_dssp ---------------------------------------TTCHHHHHHHHHHHHHHHHHHHTTCCCEEEEECEESSS
T ss_pred ---------------------------------------CCcHHHHHHHHHHHHHHHHHHhcCCeEEEEECCcccCC
Confidence 112679999999999988776 8999999999988653
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-15 Score=146.51 Aligned_cols=178 Identities=12% Similarity=0.046 Sum_probs=113.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCC----CcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFP----RVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGL 172 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~----~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl 172 (545)
.++|+||||+||||++++..|++.|+ ...+|+++.|... ..+...... .+......++.|+.
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~----~~~~~g~~~----dl~~~~~~~~~di~------ 69 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA----MKALEGVVM----ELEDCAFPLLAGLE------ 69 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG----HHHHHHHHH----HHHTTTCTTEEEEE------
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCc----hhhccchhh----hhhcccccccCCeE------
Confidence 47899999999999999999998763 1136888776531 111111000 01100011111333
Q ss_pred CHHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCc-eEEEEeccccccCCCcccccccCCC
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLK-MFTYVSTAFSNSYRKNIEEIIYKAH 250 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~-~~v~vSS~~v~~~~~~i~E~~~~~~ 250 (545)
+.+++.+.++++|+|||+||..+. ..+..+++++|+.+|.++++++++..+++ +++++|+.... ..++.++..+ +
T Consensus 70 ~~~~~~~a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~--~~~~~~~~~~-~ 146 (327)
T 1y7t_A 70 ATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT--NALIAYKNAP-G 146 (327)
T ss_dssp EESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH--HHHHHHHTCT-T
T ss_pred eccChHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhh--hHHHHHHHcC-C
Confidence 123466777899999999998653 34456788999999999999999862144 67776654210 0011111000 0
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCC
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKE 318 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~ 318 (545)
. ...+.|+.||..+|++...++ .+++++++||++|||++..
T Consensus 147 ~---------------------------~p~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 147 L---------------------------NPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp S---------------------------CGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred C---------------------------ChhheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 0 001569999999999987765 6899999999999998643
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=123.21 Aligned_cols=216 Identities=14% Similarity=0.078 Sum_probs=141.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lg 171 (545)
++||+++||||++.||+++++.|.+.|. +|++..|... .+..+. ++....+ .+. |++++.
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~Ga---~Vvi~~r~~~----~~~~~~--------~~~~g~~~~~~~~Dv~d~~-- 69 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAGA---EVVCAARRAP----DETLDI--------IAKDGGNASALLIDFADPL-- 69 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCC----HHHHHH--------HHHTTCCEEEEECCTTSTT--
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcCC---EEEEEeCCcH----HHHHHH--------HHHhCCcEEEEEccCCCHH--
Confidence 5799999999999999999999999975 6777888642 111111 1112222 233 887543
Q ss_pred CCHHHHHHHh--cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEeccccccC
Q psy16252 172 LSPDDKRLVT--SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 172 l~~~~~~~l~--~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~~v~~~ 238 (545)
..+.++ .++|++|||||.... .+.|+..+++|+.|+..+.+++.. .++-.++|++||......
T Consensus 70 ----~v~~~~~~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g 145 (247)
T 4hp8_A 70 ----AAKDSFTDAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQG 145 (247)
T ss_dssp ----TTTTSSTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC
T ss_pred ----HHHHHHHhCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCC
Confidence 233333 368999999997532 367889999999999999887543 122468999999876532
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.||.....+.+..+ .|+++..+-||.|-
T Consensus 146 ~---------------------------------------~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~ 186 (247)
T 4hp8_A 146 G---------------------------------------IRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIE 186 (247)
T ss_dssp C---------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC
T ss_pred C---------------------------------------CCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCC
Confidence 1 112579999999988887765 78999999999986
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.+.... ............... + .--+-..+|+|++++.++..... -..+.++.+.++
T Consensus 187 T~~~~~-------~~~~~~~~~~~~~~~-P--------lgR~g~peeiA~~v~fLaSd~a~-----~iTG~~i~VDGG 243 (247)
T 4hp8_A 187 TNNTEA-------LRADAARNKAILERI-P--------AGRWGHSEDIAGAAVFLSSAAAD-----YVHGAILNVDGG 243 (247)
T ss_dssp SGGGHH-------HHTSHHHHHHHHTTC-T--------TSSCBCTHHHHHHHHHHTSGGGT-----TCCSCEEEESTT
T ss_pred Ccchhh-------cccCHHHHHHHHhCC-C--------CCCCcCHHHHHHHHHHHhCchhc-----CCcCCeEEECcc
Confidence 542110 000011111111111 1 11245679999999988765432 234778877665
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-12 Score=122.32 Aligned_cols=221 Identities=12% Similarity=0.008 Sum_probs=144.2
Q ss_pred hcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
++||+++||||+| .||.++++.|.+.|. +|++..|+... .+.+.+.+. .........+. |++
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga---~Vvi~~r~~~~---~~~~~~~~~----~~~~~~~~~~~~Dv~----- 68 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA---KLVFTYRKERS---RKELEKLLE----QLNQPEAHLYQIDVQ----- 68 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTTC---EEEEEESSGGG---HHHHHHHHG----GGTCSSCEEEECCTT-----
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCC---EEEEEECCHHH---HHHHHHHHH----hcCCCcEEEEEccCC-----
Confidence 5689999999987 899999999999975 68888887432 222222111 11112233444 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
++++...+++ .+|++|||||.... .+.+...+++|+.++..+.+.+... ++-.++|++||
T Consensus 69 -~~~~v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS 147 (256)
T 4fs3_A 69 -SDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY 147 (256)
T ss_dssp -CHHHHHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence 5566655543 78999999996421 2345667789999999888887653 22358999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
....... .....|+.||+..+.+.+..+ .|+++..+
T Consensus 148 ~~~~~~~---------------------------------------~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V 188 (256)
T 4fs3_A 148 LGGEFAV---------------------------------------QNYNVMGVAKASLEANVKYLALDLGPDNIRVNAI 188 (256)
T ss_dssp GGGTSCC---------------------------------------TTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred cccccCc---------------------------------------ccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEE
Confidence 8764321 112679999999888887765 68999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
.||.|-.+..... .............. + .--+...+|||++++.++..... .-.++++.
T Consensus 189 ~PG~i~T~~~~~~-------~~~~~~~~~~~~~~-P--------l~R~g~peevA~~v~fL~Sd~a~-----~iTG~~i~ 247 (256)
T 4fs3_A 189 SAGPIRTLSAKGV-------GGFNTILKEIKERA-P--------LKRNVDQVEVGKTAAYLLSDLSS-----GVTGENIH 247 (256)
T ss_dssp EECCCCSGGGTTC-------TTHHHHHHHHHHHS-T--------TSSCCCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred ecCCCCChhhhhc-------cCCHHHHHHHHhcC-C--------CCCCcCHHHHHHHHHHHhCchhc-----CccCCEEE
Confidence 9999866533221 11222222222211 0 11245689999999988765432 23477887
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 248 VDGG 251 (256)
T 4fs3_A 248 VDSG 251 (256)
T ss_dssp ESTT
T ss_pred ECcC
Confidence 7665
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.3e-13 Score=139.71 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=148.5
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCCCCCC-------HHHHHHhhHHHHHHhhhhc--CCCcc
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAKKNQS-------PQQRIDKMLDTVAISLKFT--CSTSK 162 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~-------~~~rl~~~~~~~~~~~~~~--~~~~~ 162 (545)
.+..++++|||||+|.||.++++.|.+.|. ..|+++ .|+..... ..+.+.+ +...+... .+.++
T Consensus 247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~--~~vvl~~~R~~~~~~~~~~~~~~~~~~~~----~~~~l~~~g~~v~~~ 320 (525)
T 3qp9_A 247 WWQADGTVLVTGAEEPAAAEAARRLARDGA--GHLLLHTTPSGSEGAEGTSGAAEDSGLAG----LVAELADLGATATVV 320 (525)
T ss_dssp SSCTTSEEEESSTTSHHHHHHHHHHHHHTC--CEEEEEECCCC---------------CHH----HHHHHHHHTCEEEEE
T ss_pred eecCCCEEEEECCCCcHHHHHHHHHHHcCC--CEEEEEeCCCCCCccccccccccCHHHHH----HHHHHHhcCCEEEEE
Confidence 456789999999999999999999999965 346666 77743200 0011111 11112222 23344
Q ss_pred c-CCCCCCCCCCHHHHHHHhcC------ccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHccC----C
Q psy16252 163 E-SAQAPDLGLSPDDKRLVTSK------VNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQCKN----L 224 (545)
Q Consensus 163 ~-Dl~~~~lgl~~~~~~~l~~~------vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~~~----~ 224 (545)
. |++ +.+++..+++. +|+|||+||.... .+.++..+++|+.|+.++.+++..... .
T Consensus 321 ~~Dvt------d~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~ 394 (525)
T 3qp9_A 321 TCDLT------DAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRP 394 (525)
T ss_dssp ECCTT------SHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CC
T ss_pred ECCCC------CHHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 4 988 67788887764 6999999997532 356788899999999999999987521 6
Q ss_pred ceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCC
Q psy16252 225 KMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFP 303 (545)
Q Consensus 225 ~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~ 303 (545)
.+||++||+.+.... .....|+.+|...+.+..+.. .|++
T Consensus 395 ~~iV~~SS~a~~~g~---------------------------------------~g~~~YaaaKa~l~~lA~~~~~~gi~ 435 (525)
T 3qp9_A 395 PVLVLFSSVAAIWGG---------------------------------------AGQGAYAAGTAFLDALAGQHRADGPT 435 (525)
T ss_dssp CEEEEEEEGGGTTCC---------------------------------------TTCHHHHHHHHHHHHHHTSCCSSCCE
T ss_pred CEEEEECCHHHcCCC---------------------------------------CCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 899999998765321 112679999999999977666 8999
Q ss_pred EEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCC
Q psy16252 304 VCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCL 383 (545)
Q Consensus 304 ~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~ 383 (545)
++.+.||.+ .. +.... ......+.. ..+..++.+++++++..++.....
T Consensus 436 v~sI~pG~~-~t------gm~~~----~~~~~~~~~-----------~g~~~l~pee~a~~l~~~l~~~~~--------- 484 (525)
T 3qp9_A 436 VTSVAWSPW-EG------SRVTE----GATGERLRR-----------LGLRPLAPATALTALDTALGHGDT--------- 484 (525)
T ss_dssp EEEEEECCB-TT------SGGGS----SHHHHHHHH-----------TTBCCBCHHHHHHHHHHHHHHTCS---------
T ss_pred EEEEECCcc-cc------ccccc----hhhHHHHHh-----------cCCCCCCHHHHHHHHHHHHhCCCC---------
Confidence 999999988 21 11100 011111111 112357899999999998876543
Q ss_pred CEEEeecCCCCcccHHHHHHHHH
Q psy16252 384 PIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 384 ~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
.+ +.. .+.|..+...+.
T Consensus 485 ~v--~v~----~~dw~~~~~~~~ 501 (525)
T 3qp9_A 485 AV--TIA----DVDWSSFAPGFT 501 (525)
T ss_dssp EE--EEC----CBCHHHHHHHHH
T ss_pred eE--EEE----eCCHHHHHhhcc
Confidence 12 222 467777766544
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-12 Score=124.40 Aligned_cols=231 Identities=13% Similarity=-0.035 Sum_probs=135.7
Q ss_pred hcCcEEEEeccc--cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH-hhHHHHHHhhhhcC----CCc------
Q psy16252 95 YEGAEILMTGAT--GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID-KMLDTVAISLKFTC----STS------ 161 (545)
Q Consensus 95 ~~~~~VlITGat--GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-~~~~~~~~~~~~~~----~~~------ 161 (545)
+++|+++||||+ |+||+++++.|++.|. +|+++.|.+.......... ..+... ..+.... ...
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGA---EILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEEEECTT
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCC---eEEEeeccccchhhhhhhhhhHhhhh-hhhcccccccccccccccee
Confidence 468999999999 9999999999999875 6777776420000000000 000000 0010000 000
Q ss_pred ------cc-CCCC--------CCCCCCH-HHHHHH---hcCccEEEEcccccc---------chHHHHHHHHHhHHHHHH
Q psy16252 162 ------KE-SAQA--------PDLGLSP-DDKRLV---TSKVNLVFHCAATLR---------FDEELKEAIRTNMCATQT 213 (545)
Q Consensus 162 ------~~-Dl~~--------~~lgl~~-~~~~~l---~~~vd~Vih~Aa~~~---------~~~~~~~~~~~Nv~gt~~ 213 (545)
+. |+++ ++ +. +.++++ +.++|++|||||... ..+.++..+++|+.|+.+
T Consensus 82 ~~~~~dv~~Dv~~~~~~~~~~~~---~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~ 158 (297)
T 1d7o_A 82 FDNPEDVPEDVKANKRYAGSSNW---TVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVS 158 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCC---SHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred ccchhhhhhhhhccccccccCHH---HHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHH
Confidence 00 2221 11 11 112222 237999999998531 135577889999999999
Q ss_pred HHHHHHHc-cCCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHH
Q psy16252 214 MLDLAKQC-KNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAE 292 (545)
Q Consensus 214 ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE 292 (545)
+++++... ..-.++|++||..+..... .+...|+.||+..+
T Consensus 159 l~~~~~~~m~~~g~iv~isS~~~~~~~~--------------------------------------~~~~~Y~asKaa~~ 200 (297)
T 1d7o_A 159 LLSHFLPIMNPGGASISLTYIASERIIP--------------------------------------GYGGGMSSAKAALE 200 (297)
T ss_dssp HHHHHGGGEEEEEEEEEEECGGGTSCCT--------------------------------------TCTTTHHHHHHHHH
T ss_pred HHHHHHHHhccCceEEEEeccccccCCC--------------------------------------CcchHHHHHHHHHH
Confidence 99999763 1125899999987643210 01136999999999
Q ss_pred HHHHHhc------cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHH
Q psy16252 293 QLLCEEA------QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALI 366 (545)
Q Consensus 293 ~~~~~~~------~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~ 366 (545)
.+.+.++ .+++++.++||.|.++..... .....+........ + ...+..++|+|++++
T Consensus 201 ~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~~-p--------~~r~~~pedvA~~v~ 264 (297)
T 1d7o_A 201 SDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAI-------GFIDTMIEYSYNNA-P--------IQKTLTADEVGNAAA 264 (297)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCC-------SHHHHHHHHHHHHS-S--------SCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHhCcccCcEEEEEeccccccchhhhc-------cccHHHHHHhhccC-C--------CCCCCCHHHHHHHHH
Confidence 8887654 389999999999988643211 00111211111110 0 113568999999999
Q ss_pred hcccccccccCCCCCCCCEEEeecC
Q psy16252 367 CAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++..... ...+.++++.++
T Consensus 265 ~l~s~~~~-----~itG~~i~vdgG 284 (297)
T 1d7o_A 265 FLVSPLAS-----AITGATIYVDNG 284 (297)
T ss_dssp HHTSGGGT-----TCCSCEEEESTT
T ss_pred HHhCcccc-----CCCCCEEEECCC
Confidence 88764322 124788888776
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=141.03 Aligned_cols=211 Identities=14% Similarity=0.086 Sum_probs=129.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC---CHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ---SPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~---~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lg 171 (545)
+++|+++||||+|+||+++++.|++.|. +|+++.|..... ...++++.. ...++........|++
T Consensus 17 l~gk~~lVTGas~GIG~aiA~~La~~Ga---~Vv~~~r~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~D~~----- 84 (613)
T 3oml_A 17 YDGRVAVVTGAGAGLGREYALLFAERGA---KVVVNDLGGTHSGDGASQRAADIV----VDEIRKAGGEAVADYN----- 84 (613)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEC--------------CHHHH----HHHHHHTTCCEEECCC-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCcccccccCCHHHHHHH----HHHHHHhCCeEEEEeC-----
Confidence 6789999999999999999999999975 678777732110 001111111 1112222222222665
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH---ccCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ---CKNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~~~v~vSS~~ 234 (545)
+.++...+++ .+|++|||||.... .+.++..+++|+.|+.++++++.. ..+..++|++||.+
T Consensus 85 -d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a 163 (613)
T 3oml_A 85 -SVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNS 163 (613)
T ss_dssp -CGGGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHH
T ss_pred -CHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHH
Confidence 3344555444 68999999997532 356788999999999999998843 12457999999986
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..+.+.+.++ .++++..+.|
T Consensus 164 ~~~~~---------------------------------------~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~P 204 (613)
T 3oml_A 164 GIYGN---------------------------------------FGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVP 204 (613)
T ss_dssp HHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred HcCCC---------------------------------------CCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEEC
Confidence 54221 112579999999999887765 5899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.+..-.. ... +......+..+|+|.+++.++..... ..+.++++.
T Consensus 205 g~~t~~~~--------~~~--------------------~~~~~~~~~pedvA~~v~~L~s~~~~------~tG~~i~vd 250 (613)
T 3oml_A 205 TAASRMTE--------GIL--------------------PDILFNELKPKLIAPVVAYLCHESCE------DNGSYIESA 250 (613)
T ss_dssp C------C--------CCC--------------------CHHHHTTCCGGGTHHHHHHTTSTTCC------CCSCEEEEE
T ss_pred CCCChhhh--------hcc--------------------chhhhhcCCHHHHHHHHHHhcCCCcC------CCceEEEEC
Confidence 86522100 000 01112345789999999988765421 246677766
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 251 GG 252 (613)
T 3oml_A 251 AG 252 (613)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=124.56 Aligned_cols=218 Identities=14% Similarity=0.112 Sum_probs=139.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|++.|. +|++..|+...... ....+. |++ +
T Consensus 9 L~GK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~~~~~~------------------~~~~~~~Dv~------~ 61 (261)
T 4h15_A 9 LRGKRALITAGTKGAGAATVSLFLELGA---QVLTTARARPEGLP------------------EELFVEADLT------T 61 (261)
T ss_dssp CTTCEEEESCCSSHHHHHHHHHHHHTTC---EEEEEESSCCTTSC------------------TTTEEECCTT------S
T ss_pred CCCCEEEEeccCcHHHHHHHHHHHHcCC---EEEEEECCchhCCC------------------cEEEEEcCCC------C
Confidence 5799999999999999999999999975 68888887542211 011222 887 4
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-----c----hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-----F----DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-----~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
.++.+.+++ ++|++|||||... + .+.++..+++|+.|+..+.+.+... .+-.++|++||..
T Consensus 62 ~~~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~ 141 (261)
T 4h15_A 62 KEGCAIVAEATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQ 141 (261)
T ss_dssp HHHHHHHHHHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehh
Confidence 555555443 6899999998532 1 3567888999999999988876541 2346899999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
...... .....|+.||+..+.+.+..+ .|+++..+.|
T Consensus 142 ~~~~~~--------------------------------------~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~P 183 (261)
T 4h15_A 142 RVLPLP--------------------------------------ESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSP 183 (261)
T ss_dssp GTSCCT--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hccCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeC
Confidence 543210 112579999999888887765 7899999999
Q ss_pred ceeeccCCCCCCCC-c----cCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC
Q psy16252 310 SIVISTWKEPIPGW-I----DNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP 384 (545)
Q Consensus 310 ~~i~g~~~~~~~g~-~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~ 384 (545)
|.|-.+........ . ................ ...--+...+|||++++.++..... .-.+.
T Consensus 184 G~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~PlgR~g~peevA~~v~fLaS~~a~-----~itG~ 249 (261)
T 4h15_A 184 GWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGG---------IPLGRPAKPEEVANLIAFLASDRAA-----SITGA 249 (261)
T ss_dssp CCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTC---------CTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSC
T ss_pred CCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcC---------CCCCCCcCHHHHHHHHHHHhCchhc-----CccCc
Confidence 98855311000000 0 0000000011111110 0011256789999999987754332 23578
Q ss_pred EEEeecC
Q psy16252 385 IYNYVNS 391 (545)
Q Consensus 385 vy~i~~~ 391 (545)
++++.++
T Consensus 250 ~i~VDGG 256 (261)
T 4h15_A 250 EYTIDGG 256 (261)
T ss_dssp EEEESTT
T ss_pred EEEECCc
Confidence 8888765
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=121.49 Aligned_cols=157 Identities=13% Similarity=-0.049 Sum_probs=83.1
Q ss_pred cCccEEEEcccccc---------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCCcccccccCCCC
Q psy16252 182 SKVNLVFHCAATLR---------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRKNIEEIIYKAHT 251 (545)
Q Consensus 182 ~~vd~Vih~Aa~~~---------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~ 251 (545)
..+|++|||||... ..+.++..+++|+.|+.++++++... ..-.++|++||..+.....
T Consensus 132 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~----------- 200 (319)
T 2ptg_A 132 GQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVIP----------- 200 (319)
T ss_dssp SCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC-----------------
T ss_pred CCCCEEEECCccCCCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCceEEEEeccccccccC-----------
Confidence 37899999998531 12457788999999999999998763 1115899999987542210
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc------cCCCEEEEccceeeccCCCCCCCCcc
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA------QFFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~------~~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
.+...|+.||+..+.+.+.++ .+++++.++||.|..+.....+.
T Consensus 201 ---------------------------~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~--- 250 (319)
T 2ptg_A 201 ---------------------------GYGGGMSSAKAALESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGK--- 250 (319)
T ss_dssp ---------------------------------------THHHHHHHHHHHHHHHCCEEEEEEECCCC------------
T ss_pred ---------------------------ccchhhHHHHHHHHHHHHHHHHHhccccCeeEEEEeeCCccChhhhhccc---
Confidence 011369999998888876553 38999999999986652211000
Q ss_pred CccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 326 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
. ....+...... . + ........+..++|+|++++.++..... ...+.++.+.++
T Consensus 251 ~--~~~~~~~~~~~-~---~-~~~~p~~r~~~peevA~~v~~L~s~~~~-----~itG~~i~vdGG 304 (319)
T 2ptg_A 251 A--GDKTFIDLAID-Y---S-EANAPLQKELESDDVGRAALFLLSPLAR-----AVTGATLYVDNG 304 (319)
T ss_dssp -----------------------------CCCHHHHHHHHHHHTSGGGT-----TCCSCEEEESTT
T ss_pred c--cchhhHHHHHH-H---H-hccCCCCCCCCHHHHHHHHHHHhCcccC-----CccCCEEEECCC
Confidence 0 00000000000 0 0 0000112356889999999988765332 234778888766
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=113.87 Aligned_cols=240 Identities=12% Similarity=-0.052 Sum_probs=134.1
Q ss_pred hcCcEEEEecc--ccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHH-hhHHHHHHhhhhcC----CCccc-CC-
Q psy16252 95 YEGAEILMTGA--TGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID-KMLDTVAISLKFTC----STSKE-SA- 165 (545)
Q Consensus 95 ~~~~~VlITGa--tGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-~~~~~~~~~~~~~~----~~~~~-Dl- 165 (545)
+++|+++|||| +|+||+++++.|++.|. +|+++.|++......+... ..+... ..+.... ..++. |+
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~---~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~ 82 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGA---RVALGTWPPVLGLFQKSLQSGRLDED-RKLPDGSLIEFAGVYPLDAA 82 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTTC---EEEEEECHHHHHHHHHHHHHTTTHHH-HBCTTSCBCCCSCEEECCTT
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCCC---EEEEEecccccchhhhhhhhhhhhhh-hhhhcccccccccccccccc
Confidence 46899999999 89999999999999875 6777776421000000000 000000 0111000 11111 21
Q ss_pred -CCCC-CCC-----------CHHHHHHHh-------cCccEEEEcccccc---------chHHHHHHHHHhHHHHHHHHH
Q psy16252 166 -QAPD-LGL-----------SPDDKRLVT-------SKVNLVFHCAATLR---------FDEELKEAIRTNMCATQTMLD 216 (545)
Q Consensus 166 -~~~~-lgl-----------~~~~~~~l~-------~~vd~Vih~Aa~~~---------~~~~~~~~~~~Nv~gt~~ll~ 216 (545)
+++. +.. +.++++.++ .++|++|||||... ..+.++..+++|+.|+.++++
T Consensus 83 ~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 162 (315)
T 2o2s_A 83 FDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQ 162 (315)
T ss_dssp CSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHH
Confidence 1111 000 112233332 37999999998531 125577889999999999999
Q ss_pred HHHHc-cCCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHH
Q psy16252 217 LAKQC-KNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLL 295 (545)
Q Consensus 217 ~a~~~-~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~ 295 (545)
++... ..-.++|++||..+..... .+...|+.||+..+.+.
T Consensus 163 ~~~~~m~~~g~Iv~isS~~~~~~~~--------------------------------------~~~~~Y~asKaal~~l~ 204 (315)
T 2o2s_A 163 HFGPIMNEGGSAVTLSYLAAERVVP--------------------------------------GYGGGMSSAKAALESDT 204 (315)
T ss_dssp HHSTTEEEEEEEEEEEEGGGTSCCT--------------------------------------TCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEecccccccCC--------------------------------------CccHHHHHHHHHHHHHH
Confidence 98753 1115899999987643210 11136999999888888
Q ss_pred HHhc------cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcc
Q psy16252 296 CEEA------QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAP 369 (545)
Q Consensus 296 ~~~~------~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~ 369 (545)
+.++ .++++..++||.|..+............. ...+...... .. + ...+...+|+|++++.++
T Consensus 205 ~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~-~~~~~~~~~~-~~---p-----~~r~~~pedvA~~v~~L~ 274 (315)
T 2o2s_A 205 RTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSGEKSF-IDYAIDYSYN-NA---P-----LRRDLHSDDVGGAALFLL 274 (315)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCCCCHHHHHTTCSSSSCH-HHHHHHHHHH-HS---S-----SCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHhCcccCeEEEEEecccccchhhhhccccccchh-HHHHHHHHhc-cC---C-----CCCCCCHHHHHHHHHHHh
Confidence 6653 48999999999986542110000000000 0011110000 00 0 112568899999999887
Q ss_pred cccccccCCCCCCCCEEEeecC
Q psy16252 370 WNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 370 ~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
..... ...+.++.+.++
T Consensus 275 s~~~~-----~itG~~i~vdGG 291 (315)
T 2o2s_A 275 SPLAR-----AVSGVTLYVDNG 291 (315)
T ss_dssp SGGGT-----TCCSCEEEESTT
T ss_pred Cchhc-----cCcCCEEEECCC
Confidence 64332 224678877765
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=126.26 Aligned_cols=163 Identities=15% Similarity=0.177 Sum_probs=119.4
Q ss_pred hcCcEEEEeccccccchHHHHHHH-hhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLL-RSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll-~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~l 170 (545)
-.+++++||||+|.||..+++.|. +.|. +.|+++.|+.......+.+.+ .++... ..++. |++
T Consensus 528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga--~~vvl~~R~~~~~~~~~~~~~-------~l~~~G~~v~~~~~Dvs---- 594 (795)
T 3slk_A 528 DAAGTVLVTGGTGALGAEVARHLVIERGV--RNLVLVSRRGPAASGAAELVA-------QLTAYGAEVSLQACDVA---- 594 (795)
T ss_dssp CTTSEEEEETTTSHHHHHHHHHHHHTSSC--CEEEEEESSGGGSTTHHHHHH-------HHHHTTCEEEEEECCTT----
T ss_pred ccccceeeccCCCCcHHHHHHHHHHHcCC--cEEEEeccCccchHHHHHHHH-------HHHhcCCcEEEEEeecC----
Confidence 457899999999999999999999 6653 468888997543222222211 122222 23333 888
Q ss_pred CCCHHHHHHHhc------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccccc
Q psy16252 171 GLSPDDKRLVTS------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 171 gl~~~~~~~l~~------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~ 237 (545)
+.++++.+++ .+|+|||||+.... .+.++..+++|+.|+.++.+++. +.. +||++||.+...
T Consensus 595 --d~~~v~~~~~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~--~~l-~iV~~SS~ag~~ 669 (795)
T 3slk_A 595 --DRETLAKVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELID--PDV-ALVLFSSVSGVL 669 (795)
T ss_dssp --CHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSC--TTS-EEEEEEETHHHH
T ss_pred --CHHHHHHHHHHHHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHh--hCC-EEEEEccHHhcC
Confidence 6777877765 47999999998531 35678889999999999999983 355 899999986542
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeec
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVIS 314 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g 314 (545)
.. .....|+.+|...+.+.++.. .|++++.+-||.+-.
T Consensus 670 g~---------------------------------------~g~~~YaAaka~~~alA~~~~~~Gi~v~sI~pG~v~t 708 (795)
T 3slk_A 670 GS---------------------------------------GGQGNYAAANSFLDALAQQRQSRGLPTRSLAWGPWAE 708 (795)
T ss_dssp TC---------------------------------------SSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSC
T ss_pred CC---------------------------------------CCCHHHHHHHHHHHHHHHHHHHcCCeEEEEECCeECc
Confidence 21 112679999999998888777 899999999998754
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=115.93 Aligned_cols=175 Identities=11% Similarity=-0.024 Sum_probs=108.1
Q ss_pred CcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh--cC---CCccc-CCCCC
Q psy16252 97 GAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF--TC---STSKE-SAQAP 168 (545)
Q Consensus 97 ~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~--~~---~~~~~-Dl~~~ 168 (545)
+|+++||||++ .||.+++++|++.|. +|++..|.+... ...|-.+.....-..... .. ..++. |++..
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~---~Vv~~~~~~~~~-l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 77 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNV---KIIFGIWPPVYN-IFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFD 77 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEECHHHHH-HHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCS
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCC---EEEEEecCcccc-ccccchHHHHHHHHHHHhhccccccccccccccccc
Confidence 68999999875 999999999999975 677665542000 000000000000000000 00 11122 55543
Q ss_pred --CCCCCHH-------------HHHHHh-------cCccEEEEcccccc---------chHHHHHHHHHhHHHHHHHHHH
Q psy16252 169 --DLGLSPD-------------DKRLVT-------SKVNLVFHCAATLR---------FDEELKEAIRTNMCATQTMLDL 217 (545)
Q Consensus 169 --~lgl~~~-------------~~~~l~-------~~vd~Vih~Aa~~~---------~~~~~~~~~~~Nv~gt~~ll~~ 217 (545)
+. ++.+ ++..++ ..+|++|||||... ..+.++..+++|+.|+..++++
T Consensus 78 ~~~~-~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ 156 (329)
T 3lt0_A 78 TAND-IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKY 156 (329)
T ss_dssp SGGG-CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred chhh-hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHH
Confidence 20 1111 333332 36899999999531 1355788899999999999998
Q ss_pred HHHc-cCCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCc-hHHHHHHHHHHHH
Q psy16252 218 AKQC-KNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMN-TYTLTKAAAEQLL 295 (545)
Q Consensus 218 a~~~-~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~~aE~~~ 295 (545)
+... ..-.++|++||....... .... .|+.||+..+.+.
T Consensus 157 ~~p~m~~~g~Iv~isS~~~~~~~---------------------------------------~~~~~~Y~asKaal~~~~ 197 (329)
T 3lt0_A 157 FVNIMKPQSSIISLTYHASQKVV---------------------------------------PGYGGGMSSAKAALESDT 197 (329)
T ss_dssp HGGGEEEEEEEEEEECGGGTSCC---------------------------------------TTCTTTHHHHHHHHHHHH
T ss_pred HHHHHhhCCeEEEEeCccccCCC---------------------------------------CcchHHHHHHHHHHHHHH
Confidence 8753 111589999998765321 1113 7999999988888
Q ss_pred HHhc----c--CCCEEEEccceeecc
Q psy16252 296 CEEA----Q--FFPVCIFRPSIVIST 315 (545)
Q Consensus 296 ~~~~----~--~l~~~i~Rp~~i~g~ 315 (545)
+..+ + ++++..+.||.|-.+
T Consensus 198 ~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 198 RVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp HHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HHHHHHhCCccCeEEEEEecceeech
Confidence 7654 4 899999999998665
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8.8e-10 Score=127.95 Aligned_cols=164 Identities=16% Similarity=0.147 Sum_probs=110.8
Q ss_pred hcCcEEEEeccccc-cchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGF-LGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGf-lG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~l 170 (545)
+++|+||||||+|. ||.++++.|++.|. +|+++.|... +++......+...+... ...++. |++
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA---~VVl~~~R~~-----~~l~~~a~eL~~el~~~G~~v~~v~~DVs---- 717 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGA---KVIVTTSRFS-----RQVTEYYQGIYARCGARGSQLVVVPFNQG---- 717 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTTC---EEEEEESSCC-----HHHHHHHHHHHHHHCCTTCEEEEEECCTT----
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCC---EEEEEecCCh-----HHHHHHHHHHHHHhhccCCeEEEEEcCCC----
Confidence 56799999999999 99999999999875 5777644321 11111111111222111 223334 888
Q ss_pred CCCHHHHHHHhc-----------CccEEEEccccccc----------hHHHHHHHHHhHHHHHHHHHHHHHccC-----C
Q psy16252 171 GLSPDDKRLVTS-----------KVNLVFHCAATLRF----------DEELKEAIRTNMCATQTMLDLAKQCKN-----L 224 (545)
Q Consensus 171 gl~~~~~~~l~~-----------~vd~Vih~Aa~~~~----------~~~~~~~~~~Nv~gt~~ll~~a~~~~~-----~ 224 (545)
+.+++..+++ .+|+||||||.... .+.++..+++|+.|+.+++++++..+. .
T Consensus 718 --d~esV~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~ 795 (1878)
T 2uv9_A 718 --SKQDVEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPA 795 (1878)
T ss_dssp --CHHHHHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCE
T ss_pred --CHHHHHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCC
Confidence 5666665542 58999999997532 256788899999999999887443222 2
Q ss_pred ceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----
Q psy16252 225 KMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----- 299 (545)
Q Consensus 225 ~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----- 299 (545)
.+||++||..+.... ...|+.||+..+.+.....
T Consensus 796 G~IVnISS~ag~~gg-----------------------------------------~~aYaASKAAL~aLt~~laAeEla 834 (1878)
T 2uv9_A 796 QVILPLSPNHGTFGN-----------------------------------------DGLYSESKLALETLFNRWYSESWG 834 (1878)
T ss_dssp EECCEECSCSSSSSC-----------------------------------------CSSHHHHHHHHTTHHHHHHHSTTT
T ss_pred CEEEEEcchhhccCC-----------------------------------------chHHHHHHHHHHHHHHHHHHHHcC
Confidence 589999998654211 1579999999998865432
Q ss_pred cCCCEEEEccceee
Q psy16252 300 QFFPVCIFRPSIVI 313 (545)
Q Consensus 300 ~~l~~~i~Rp~~i~ 313 (545)
.+++++.+.||.|-
T Consensus 835 ~~IrVNaVaPG~V~ 848 (1878)
T 2uv9_A 835 NYLTICGAVIGWTR 848 (1878)
T ss_dssp TTEEEEEEEECCBC
T ss_pred CCeEEEEEEeccee
Confidence 34899999999876
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-09 Score=126.60 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=111.8
Q ss_pred hcCcEEEEeccccc-cchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCC
Q psy16252 95 YEGAEILMTGATGF-LGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPD 169 (545)
Q Consensus 95 ~~~~~VlITGatGf-lG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~ 169 (545)
+++|+++||||+|. ||.++++.|++.|. +|+++ .|+.. ++......+...+.. ....++. |++
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~GA---~Vvl~~~R~~~------~l~~~~~eL~~~~~~~g~~v~~v~~DVs--- 740 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGGA---KVVVTTSRFSK------QVTDYYQSIYAKYGAKGSTLIVVPFNQG--- 740 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTTC---EEEEEESSCCH------HHHHHHHHHHHHHCCTTCEEEEEECCTT---
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCC---EEEEEecCCHH------HHHHHHHHHHHHhhcCCCeEEEEEecCC---
Confidence 56899999999998 99999999999875 67766 35431 121111111111211 1123334 888
Q ss_pred CCCCHHHHHHHhc-------------CccEEEEccccccc----------hHHHHHHHHHhHHHHHHHHHHHHHccC---
Q psy16252 170 LGLSPDDKRLVTS-------------KVNLVFHCAATLRF----------DEELKEAIRTNMCATQTMLDLAKQCKN--- 223 (545)
Q Consensus 170 lgl~~~~~~~l~~-------------~vd~Vih~Aa~~~~----------~~~~~~~~~~Nv~gt~~ll~~a~~~~~--- 223 (545)
+.+++..+++ .+|++|||||.... .+.++..+++|+.|+..++++++..+.
T Consensus 741 ---d~~sV~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~ 817 (1887)
T 2uv8_A 741 ---SKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIET 817 (1887)
T ss_dssp ---CHHHHHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCS
T ss_pred ---CHHHHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5566665542 58999999997522 245678899999999999998854332
Q ss_pred --CceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHH-HHHhc-
Q psy16252 224 --LKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQL-LCEEA- 299 (545)
Q Consensus 224 --~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~-~~~~~- 299 (545)
-.+||++||....... ...|+.||+..+.+ .+.++
T Consensus 818 ~~~G~IVnISS~ag~~gg-----------------------------------------~~aYaASKAAL~~Lttr~lA~ 856 (1887)
T 2uv8_A 818 RPAQVILPMSPNHGTFGG-----------------------------------------DGMYSESKLSLETLFNRWHSE 856 (1887)
T ss_dssp CCEEEEEEECSCTTCSSC-----------------------------------------BTTHHHHHHHGGGHHHHHHHS
T ss_pred CCCCEEEEEcChHhccCC-----------------------------------------CchHHHHHHHHHHHHHHHHHH
Confidence 2589999998654220 15799999999998 44332
Q ss_pred ---cCCCEEEEccceeec
Q psy16252 300 ---QFFPVCIFRPSIVIS 314 (545)
Q Consensus 300 ---~~l~~~i~Rp~~i~g 314 (545)
..++++.+.||.|-+
T Consensus 857 ela~~IrVNaV~PG~V~t 874 (1887)
T 2uv8_A 857 SWANQLTVCGAIIGWTRG 874 (1887)
T ss_dssp SCTTTEEEEEEEECCEEC
T ss_pred HhCCCeEEEEEEeccccc
Confidence 338899999999874
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-10 Score=127.57 Aligned_cols=164 Identities=15% Similarity=0.136 Sum_probs=108.1
Q ss_pred hcCcEEEEeccccc-cchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhh--cCCCccc-CCCCCC
Q psy16252 95 YEGAEILMTGATGF-LGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKF--TCSTSKE-SAQAPD 169 (545)
Q Consensus 95 ~~~~~VlITGatGf-lG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~--~~~~~~~-Dl~~~~ 169 (545)
+++|+++||||+|+ ||.++++.|++.|. +|+++ .|+...... ...+ +...+.. ....++. |++++
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~GA---~VVL~~~R~~e~lee--~a~e----L~ael~a~Ga~V~vV~~DVTD~- 543 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGA---KVVVTTSRFSKQVTD--YYQS----IYAKYGAKGSTLIVVPFNQGSK- 543 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHTC---EEEEEESSCSTTTTT--HHHH----TTTTTCCTTCEEEEEECCSSST-
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCcC---EEEEEeCCCHHHHHH--HHHH----HHHHhhcCCCeEEEEEeCCCCH-
Confidence 56899999999998 99999999999975 57766 454432211 1111 1011110 1122333 88844
Q ss_pred CCCCHHHHHHHhc-------------CccEEEEccccccc----------hHHHHHHHHHhHHHHHHHHHHHHHccC---
Q psy16252 170 LGLSPDDKRLVTS-------------KVNLVFHCAATLRF----------DEELKEAIRTNMCATQTMLDLAKQCKN--- 223 (545)
Q Consensus 170 lgl~~~~~~~l~~-------------~vd~Vih~Aa~~~~----------~~~~~~~~~~Nv~gt~~ll~~a~~~~~--- 223 (545)
+++..+++ .+|+|||+||.... .+.++..+++|+.|+.+++++++..+.
T Consensus 544 -----esVeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~k 618 (1688)
T 2pff_A 544 -----QDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIET 618 (1688)
T ss_dssp -----THHHHHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTT
T ss_pred -----HHHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHh
Confidence 34444432 58999999996422 345678889999999999998843222
Q ss_pred --CceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHH-hc-
Q psy16252 224 --LKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCE-EA- 299 (545)
Q Consensus 224 --~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~-~~- 299 (545)
-.+||++||.++... ....|+.||+..+.+..+ ++
T Consensus 619 rggGrIVnISSiAG~~G-----------------------------------------g~saYaASKAAL~aLttrsLAe 657 (1688)
T 2pff_A 619 RPAQVILPMSPNHGTFG-----------------------------------------GDGMYSESKLSLETLFNRWHSE 657 (1688)
T ss_dssp SCEEECCCCCSCTTTSS-----------------------------------------CBTTHHHHHHHHTHHHHHTTTS
T ss_pred CCCCEEEEEEChHhccC-----------------------------------------CchHHHHHHHHHHHHHHHHHHH
Confidence 158999999865421 015799999999998433 32
Q ss_pred ---cCCCEEEEccceeec
Q psy16252 300 ---QFFPVCIFRPSIVIS 314 (545)
Q Consensus 300 ---~~l~~~i~Rp~~i~g 314 (545)
..++++.+.||.|-+
T Consensus 658 Ela~~IRVNaVaPG~V~T 675 (1688)
T 2pff_A 658 SWANQLTVCGAIIGWTRG 675 (1688)
T ss_dssp SCTTTEECCCCCCCCCCC
T ss_pred HcCCCeEEEEEEECcCcC
Confidence 337788889988864
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-08 Score=100.27 Aligned_cols=168 Identities=12% Similarity=-0.051 Sum_probs=110.7
Q ss_pred cCcEEEEeccccccchHHHHHHHh-hCCCcCEEEEEecCCCCCCH---------HHHHHhhHHHHHHhhhhcCCC--ccc
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLR-SFPRVKTIYVIVRAKKNQSP---------QQRIDKMLDTVAISLKFTCST--SKE 163 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~-~g~~v~~V~~l~R~~~~~~~---------~~rl~~~~~~~~~~~~~~~~~--~~~ 163 (545)
.+|++|||||++.||.++++.|.+ .|. +|++..|....... .+.+... ++..... .+.
T Consensus 46 ~gKvaLVTGas~GIG~AiA~~LA~g~GA---~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~-------~~~~G~~a~~i~ 115 (405)
T 3zu3_A 46 GPKRVLVIGASTGYGLAARITAAFGCGA---DTLGVFFERPGEEGKPGTSGWYNSAAFHKF-------AAQKGLYAKSIN 115 (405)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHHHCC---EEEEEECCCCCBTTBCCCHHHHHHHHHHHH-------HHHTTCCEEEEE
T ss_pred CCCEEEEeCcchHHHHHHHHHHHHhcCC---EEEEEeCCchhhhhhcccccchhHHHHHHH-------HHhcCCceEEEE
Confidence 379999999999999999999999 875 67777776543211 0111111 1111222 223
Q ss_pred -CCCCCCCCCCHHHHHHHhc-------CccEEEEccccc----------------c------------------------
Q psy16252 164 -SAQAPDLGLSPDDKRLVTS-------KVNLVFHCAATL----------------R------------------------ 195 (545)
Q Consensus 164 -Dl~~~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~----------------~------------------------ 195 (545)
|++ +.++.+.+++ .+|++|||||.. .
T Consensus 116 ~Dvt------d~~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~ 189 (405)
T 3zu3_A 116 GDAF------SDEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQP 189 (405)
T ss_dssp SCTT------SHHHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECC
T ss_pred CCCC------CHHHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCC
Confidence 888 5556555543 689999999863 0
Q ss_pred -chHHHHHHHHHhHHHHH-HHHHHHHHcc---CCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHH
Q psy16252 196 -FDEELKEAIRTNMCATQ-TMLDLAKQCK---NLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQ 270 (545)
Q Consensus 196 -~~~~~~~~~~~Nv~gt~-~ll~~a~~~~---~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (545)
..+.++..+++|..++. .+++.+.... +-.++|.+||+.......
T Consensus 190 ~t~ee~~~~v~Vn~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p------------------------------ 239 (405)
T 3zu3_A 190 ATQSEIDSTVAVMGGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHD------------------------------ 239 (405)
T ss_dssp CCHHHHHHHHHHHSSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTT------------------------------
T ss_pred CCHHHHHHHHHhhchhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCC------------------------------
Confidence 12456777888888776 5666554321 114799999986532110
Q ss_pred HhhhhhcCCCCchHHHHHHHHHHHHHHhc-----c-CCCEEEEccceeeccC
Q psy16252 271 ETRERLSHENMNTYTLTKAAAEQLLCEEA-----Q-FFPVCIFRPSIVISTW 316 (545)
Q Consensus 271 ~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~-~l~~~i~Rp~~i~g~~ 316 (545)
..+...|+.||...+.+.+..+ . |+++.++-||.|-.+.
T Consensus 240 -------~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVNaVaPG~i~T~~ 284 (405)
T 3zu3_A 240 -------IYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARVSVLKAVVSQA 284 (405)
T ss_dssp -------TTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEECCCCCCHH
T ss_pred -------CccchHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEEeCCCcCch
Confidence 0112579999999999888765 5 8999999999987653
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.4e-09 Score=112.76 Aligned_cols=167 Identities=14% Similarity=0.092 Sum_probs=106.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC---CHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ---SPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~---~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lg 171 (545)
+++|+++||||++.||+++++.|++.|. +|++..|..... ...++++.... .++......+.|+.+..
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~Ga---~Vv~~~~~~~~~~~gr~~~~~~~~~~----~i~~~g~~~~~d~~d~~-- 76 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKLGA---KVVVNDLGGALNGQGGNSKAADVVVD----EIVKNGGVAVADYNNVL-- 76 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECC-----------CHHHHHHH----HHHHTTCEEEEECCCTT--
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCC---EEEEEeCCccccccccchHHHHHHHH----HHHhcCCeEEEEcCCHH--
Confidence 4689999999999999999999999975 677766653100 00011221111 11111111112444321
Q ss_pred CCHHH-HHHH---hcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccccc
Q psy16252 172 LSPDD-KRLV---TSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 172 l~~~~-~~~l---~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~ 237 (545)
+.+. ++.+ +..+|++|||||.... .+.++..+++|+.|+..+.+++... .+-.++|++||.....
T Consensus 77 -~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~ 155 (604)
T 2et6_A 77 -DGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLY 155 (604)
T ss_dssp -CHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred -HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC
Confidence 2222 2222 3479999999997431 3567889999999999998877541 1336899999986532
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.. .....|+.||+..+.+.+..+ .|+++..+.|+
T Consensus 156 ~~---------------------------------------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg 194 (604)
T 2et6_A 156 GN---------------------------------------FGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL 194 (604)
T ss_dssp CC---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred CC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC
Confidence 11 111579999998888887765 68999999996
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-08 Score=101.54 Aligned_cols=167 Identities=13% Similarity=-0.043 Sum_probs=108.1
Q ss_pred CcEEEEeccccccchHHHHHHHh-hCCCcCEEEEEecCCCCCCH---------HHHHHhhHHHHHHhhhhcCCC--ccc-
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLR-SFPRVKTIYVIVRAKKNQSP---------QQRIDKMLDTVAISLKFTCST--SKE- 163 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~-~g~~v~~V~~l~R~~~~~~~---------~~rl~~~~~~~~~~~~~~~~~--~~~- 163 (545)
+|++|||||++.||.++++.|.+ .|. +|++..|....... ...+.+ .++..... .+.
T Consensus 61 gKvaLVTGASsGIG~AiA~~LA~~~GA---~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~-------~~~~~G~~a~~i~~ 130 (422)
T 3s8m_A 61 PKKVLVIGASSGYGLASRITAAFGFGA---DTLGVFFEKPGTASKAGTAGWYNSAAFDK-------HAKAAGLYSKSING 130 (422)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHHHCC---EEEEEECCCCCCSSSCCCHHHHHHHHHHH-------HHHHTTCCEEEEES
T ss_pred CCEEEEECCChHHHHHHHHHHHHhCCC---EEEEEeCCchhhhhhhcccccchhHHHHH-------HHHhcCCcEEEEEe
Confidence 79999999999999999999999 875 67777776543221 011111 11112222 223
Q ss_pred CCCCCCCCCCHHHHHHHh--------cCccEEEEccccc----------------c------------------------
Q psy16252 164 SAQAPDLGLSPDDKRLVT--------SKVNLVFHCAATL----------------R------------------------ 195 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~--------~~vd~Vih~Aa~~----------------~------------------------ 195 (545)
|++ +++..+.++ ..+|++|||||.. .
T Consensus 131 Dvt------d~~~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~ 204 (422)
T 3s8m_A 131 DAF------SDAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEP 204 (422)
T ss_dssp CTT------SHHHHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECC
T ss_pred cCC------CHHHHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCC
Confidence 888 455544433 4689999999861 0
Q ss_pred -chHHHHHHHHHhHHHHH-HHHHHHHHcc---CCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHH
Q psy16252 196 -FDEELKEAIRTNMCATQ-TMLDLAKQCK---NLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQ 270 (545)
Q Consensus 196 -~~~~~~~~~~~Nv~gt~-~ll~~a~~~~---~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (545)
..+.++..+++|..++. .+++.+.... +-.++|++||........
T Consensus 205 ~t~e~~~~~v~Vn~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p------------------------------ 254 (422)
T 3s8m_A 205 ASAQEIEDTITVMGGQDWELWIDALEGAGVLADGARSVAFSYIGTEITWP------------------------------ 254 (422)
T ss_dssp CCHHHHHHHHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHH------------------------------
T ss_pred CCHHHHHHHHHhhchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCC------------------------------
Confidence 12445666677776664 6666654321 114799999986532100
Q ss_pred HhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccC
Q psy16252 271 ETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTW 316 (545)
Q Consensus 271 ~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~ 316 (545)
..+...|+.||...+.+.+..+ .|+++..+-||.|-.+.
T Consensus 255 -------~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVNaVaPG~i~T~~ 298 (422)
T 3s8m_A 255 -------IYWHGALGKAKVDLDRTAQRLNARLAKHGGGANVAVLKSVVTQA 298 (422)
T ss_dssp -------HHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTT
T ss_pred -------CccchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEcCCCcChh
Confidence 0011579999999988887765 68999999999986653
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-08 Score=109.95 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=105.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCc--cc-CC-CCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTS--KE-SA-QAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~--~~-Dl-~~~~l 170 (545)
+++|+++||||++.||+++++.|.+.|. +|++..|.. . +.+.+. ++....+. +. |+ .
T Consensus 320 l~gkvalVTGas~GIG~a~A~~la~~Ga---~Vv~~~~~~----~-~~~~~~-------i~~~g~~~~~~~~Dv~~---- 380 (604)
T 2et6_A 320 LKDKVVLITGAGAGLGKEYAKWFAKYGA---KVVVNDFKD----A-TKTVDE-------IKAAGGEAWPDQHDVAK---- 380 (604)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEECSSC----C-HHHHHH-------HHHTTCEEEEECCCHHH----
T ss_pred cCCCeEEEECcchHHHHHHHHHHHHCCC---EEEEEeCcc----H-HHHHHH-------HHhcCCeEEEEEcChHH----
Confidence 5789999999999999999999999976 577666532 1 111111 11111111 11 55 2
Q ss_pred CCCHHH-HHHH---hcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 171 GLSPDD-KRLV---TSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 171 gl~~~~-~~~l---~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
+.+. ++.+ +..+|++|||||.... .+.++..+++|+.|+.++.+++... .+-.++|++||.+..
T Consensus 381 --~~~~~~~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~ 458 (604)
T 2et6_A 381 --DSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGI 458 (604)
T ss_dssp --HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred --HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhc
Confidence 1111 2222 3479999999997531 3567889999999999998877541 234689999998654
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+....+.+..+ .|+++..+.||.
T Consensus 459 ~~~---------------------------------------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~ 499 (604)
T 2et6_A 459 YGN---------------------------------------FGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA 499 (604)
T ss_dssp SCC---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC
T ss_pred cCC---------------------------------------CCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC
Confidence 211 011579999998888877664 689999999983
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.8e-08 Score=99.11 Aligned_cols=171 Identities=12% Similarity=-0.065 Sum_probs=108.3
Q ss_pred hcCcEEEEeccccccchH--HHHHHHhhCCCcCEEEEEecCCCCCCH---------HHHHHhhHHHHHHhhhhcCCCccc
Q psy16252 95 YEGAEILMTGATGFLGKL--LIEKLLRSFPRVKTIYVIVRAKKNQSP---------QQRIDKMLDTVAISLKFTCSTSKE 163 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~--l~~~Ll~~g~~v~~V~~l~R~~~~~~~---------~~rl~~~~~~~~~~~~~~~~~~~~ 163 (545)
..+|+++||||++.||.+ ++..|.+.|. +|+++.|....... .+.+.+.... . ......+.
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga---~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~-g~~~~~~~ 129 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEA---HTIGVSYETGATDRRIGTAGWYNNIFFKEFAKK----K-GLVAKNFI 129 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCC---EEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHH----T-TCCEEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCC---EEEEEecCcchhhhcccccccchHHHHHHHHHH----c-CCcEEEEE
Confidence 358999999999999999 9999988764 68888886543210 1222221111 0 01122333
Q ss_pred -CCCCCCCCCCHHHHHHHhc-------CccEEEEccccc----------------c------------------------
Q psy16252 164 -SAQAPDLGLSPDDKRLVTS-------KVNLVFHCAATL----------------R------------------------ 195 (545)
Q Consensus 164 -Dl~~~~lgl~~~~~~~l~~-------~vd~Vih~Aa~~----------------~------------------------ 195 (545)
|++ +.++.+.+++ .+|++|||||.. .
T Consensus 130 ~Dvt------d~~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~ 203 (418)
T 4eue_A 130 EDAF------SNETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSS 203 (418)
T ss_dssp SCTT------CHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECB
T ss_pred eeCC------CHHHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccC
Confidence 888 5555555543 689999999863 0
Q ss_pred -chHHHHHHHHHhHHHHH-HHHHHHHHcc---CCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHH
Q psy16252 196 -FDEELKEAIRTNMCATQ-TMLDLAKQCK---NLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQ 270 (545)
Q Consensus 196 -~~~~~~~~~~~Nv~gt~-~ll~~a~~~~---~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (545)
..+.++..+++|..+.. .+++.+.... +-.++|.+||........
T Consensus 204 ~t~e~~~~~~~vn~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~p------------------------------ 253 (418)
T 4eue_A 204 ASIEEIEETRKVMGGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTYK------------------------------ 253 (418)
T ss_dssp CCHHHHHHHHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGTT------------------------------
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCCC------------------------------
Confidence 12445566677766555 5555554421 114789999875432110
Q ss_pred HhhhhhcCCCCchHHHHHHHHHHHHHHhc----c--CCCEEEEccceeeccC
Q psy16252 271 ETRERLSHENMNTYTLTKAAAEQLLCEEA----Q--FFPVCIFRPSIVISTW 316 (545)
Q Consensus 271 ~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~--~l~~~i~Rp~~i~g~~ 316 (545)
..+...|+.||+..+.+.+..+ + |+++.++-||.|-.+.
T Consensus 254 -------~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN~V~PG~v~T~~ 298 (418)
T 4eue_A 254 -------IYREGTIGIAKKDLEDKAKLINEKLNRVIGGRAFVSVNKALVTKA 298 (418)
T ss_dssp -------TTTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEEEEECCCCCCHH
T ss_pred -------ccccHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEECCcCcChh
Confidence 0112679999999888887765 4 7999999999986653
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=8e-08 Score=117.87 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=112.7
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~l 170 (545)
|..+|+++||||+|.||.++++.|+++|. +.|+++.|+............ .++... +.++. |++
T Consensus 1881 ~~~~k~~lITGgs~GIG~aia~~la~~Ga--~~vvl~~R~~~~~~~~~~~~~-------~l~~~g~~v~~~~~Dvs---- 1947 (2512)
T 2vz8_A 1881 CPPHKSYVITGGLGGFGLQLAQWLRLRGA--QKLVLTSRSGIRTGYQARQVR-------EWRRQGVQVLVSTSNAS---- 1947 (2512)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCSHHHHHHHH-------HHHHTTCEEEEECCCSS----
T ss_pred cCCCCEEEEECCCCCHHHHHHHHHHHCCC--CEEEEEeCCCcchHHHHHHHH-------HHHhCCCEEEEEecCCC----
Confidence 34689999999999999999999999864 357788887544321111111 111112 22333 888
Q ss_pred CCCHHHHHHHhc------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH-ccCCceEEEEeccccc
Q psy16252 171 GLSPDDKRLVTS------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ-CKNLKMFTYVSTAFSN 236 (545)
Q Consensus 171 gl~~~~~~~l~~------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~~~v~vSS~~v~ 236 (545)
+.++++.+++ .+|+|||+||.... .+.++..+++|+.|+.++.+++.. ++...+||++||..+.
T Consensus 1948 --d~~~v~~~~~~~~~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~ 2025 (2512)
T 2vz8_A 1948 --SLDGARSLITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCG 2025 (2512)
T ss_dssp --SHHHHHHHHHHHHHHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHH
T ss_pred --CHHHHHHHHHHHHhcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhc
Confidence 5556655543 68999999997531 234566789999999999988765 3345799999998654
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeec
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVIS 314 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g 314 (545)
... .....|+.+|...+.+.+... .|+|...+-.|.+.+
T Consensus 2026 ~g~---------------------------------------~g~~~Y~aaKaal~~l~~~rr~~Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A 2026 RGN---------------------------------------AGQANYGFANSAMERICEKRRHDGLPGLAVQWGAIGD 2065 (2512)
T ss_dssp TTC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCBCT
T ss_pred CCC---------------------------------------CCcHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 221 112579999999999998665 789988888876644
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=92.92 Aligned_cols=115 Identities=12% Similarity=0.148 Sum_probs=79.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCC-CC-CC-C
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAP-DL-GL-S 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~-~l-gl-~ 173 (545)
.++|+||||+||+|..++..|+..|. +.+|.++.+.+. .....+ +. |...+ .+ ++ +
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~-~~ev~l~Di~~~----~~~~~d-L~---------------~~~~~~~v~~~~~ 66 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPL-VSVLHLYDVVNA----PGVTAD-IS---------------HMDTGAVVRGFLG 66 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTT-EEEEEEEESSSH----HHHHHH-HH---------------TSCSSCEEEEEES
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEeCCCc----HhHHHH-hh---------------cccccceEEEEeC
Confidence 47999999999999999999988753 457887776542 111100 00 11100 00 00 2
Q ss_pred HHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecc
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA 233 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~ 233 (545)
..++.++++++|+|||+|+...- ..+...+...|+.+++++++.+.+. +++.+++++|-
T Consensus 67 t~d~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~SN 126 (326)
T 1smk_A 67 QQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISN 126 (326)
T ss_dssp HHHHHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCS
T ss_pred CCCHHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECC
Confidence 45778888999999999997542 2233566899999999999999997 67888888874
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-07 Score=91.42 Aligned_cols=124 Identities=10% Similarity=0.051 Sum_probs=78.4
Q ss_pred CcEEEEeccccccchHHHHHHHhhCC----CcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFP----RVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGL 172 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~----~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl 172 (545)
.++|+||||+||+|.+++..|+..+. .+..|.++.+... ...+++...... +......+..|+.
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~--~~~~~~~g~~~d----l~~~~~~~~~~i~------ 72 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNE--KAQKALQGVMME----IDDCAFPLLAGMT------ 72 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCH--HHHHHHHHHHHH----HHTTTCTTEEEEE------
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCc--cccccchhhHHH----HhhhcccccCcEE------
Confidence 47999999999999999999988742 1136777655410 001222211110 1000000111222
Q ss_pred CHHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCc-eEEEEec
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLK-MFTYVST 232 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~-~~v~vSS 232 (545)
...++.+.++++|+|||+||...- ..+..++...|+.+++++++.+.+..+++ +|+++|.
T Consensus 73 ~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 73 AHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp EESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 113467778999999999997642 33446778999999999999999862244 7888875
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.3e-07 Score=88.52 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=76.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcc--c-CCCCCCCCCCH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSK--E-SAQAPDLGLSP 174 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~--~-Dl~~~~lgl~~ 174 (545)
++|+||||+||+|.+++..|+..+. ...+.++.++.. .++++.....+-+.. .+. . ++.. ..
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~-~~el~L~Di~~~----~~~~~~~~~dl~~~~-----~~~~~~~~i~~-----~~ 65 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREHS----INKLEGLREDIYDAL-----AGTRSDANIYV-----ES 65 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGGG----HHHHHHHHHHHHHHH-----TTSCCCCEEEE-----EE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCC-CCEEEEEcCCCc----hhhhHHHHHHHHHhH-----HhcCCCeEEEe-----CC
Confidence 4799999999999999999998754 345666665211 122221111111000 000 0 2221 01
Q ss_pred HHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA 233 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~ 233 (545)
+++.+.++++|+|||+||..+- ......+...|+.+++++++.+.+. + +++++++|-
T Consensus 66 d~l~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~-~~~vlv~SN 123 (313)
T 1hye_A 66 DENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-C-DTKIFVITN 123 (313)
T ss_dssp TTCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEECSS
T ss_pred cchHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecC
Confidence 1245567899999999997642 3344567899999999999999997 5 888888874
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.37 E-value=8.2e-07 Score=73.41 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=66.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++|+|+|+ |++|+.+++.|++.| ..+|+++.|++. ++... .......+. |+. +.+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g--~~~v~~~~r~~~------~~~~~--------~~~~~~~~~~d~~------~~~ 61 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSS--NYSVTVADHDLA------ALAVL--------NRMGVATKQVDAK------DEA 61 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCS--SEEEEEEESCHH------HHHHH--------HTTTCEEEECCTT------CHH
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCC--CceEEEEeCCHH------HHHHH--------HhCCCcEEEecCC------CHH
Confidence 589999999 999999999999986 237888888632 22211 111222222 665 567
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEe
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVS 231 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vS 231 (545)
.+.++++++|+|||+++... +.++++.|.+. +++.|...+
T Consensus 62 ~~~~~~~~~d~vi~~~~~~~---------------~~~~~~~~~~~-g~~~~~~~~ 101 (118)
T 3ic5_A 62 GLAKALGGFDAVISAAPFFL---------------TPIIAKAAKAA-GAHYFDLTE 101 (118)
T ss_dssp HHHHHTTTCSEEEECSCGGG---------------HHHHHHHHHHT-TCEEECCCS
T ss_pred HHHHHHcCCCEEEECCCchh---------------hHHHHHHHHHh-CCCEEEecC
Confidence 88888999999999986321 35778888886 776655433
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.36 E-value=6.7e-07 Score=87.31 Aligned_cols=118 Identities=9% Similarity=0.032 Sum_probs=76.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh-hcCCCcccCCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK-FTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~-~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
++|+||||+||+|.+++..|+..+. ..++.++.++.. .++++.....+-+... .... .+.. .+
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~-~~el~L~Di~~~----~~~~~~~~~dl~~~~~~~~~~----~v~~-------~~ 64 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIPDK----EDDTVGQAADTNHGIAYDSNT----RVRQ-------GG 64 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCGGG----HHHHHHHHHHHHHHHTTTCCC----EEEE-------CC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEcCCCC----hhhHHHHHHHHHHHHhhCCCc----EEEe-------CC
Confidence 5799999999999999999988754 446776666211 1223221111111100 0000 1110 11
Q ss_pred HHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecc
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA 233 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~ 233 (545)
.+.++++|+|||+|+...- ......+...|+.+++++++.+.+. +++.+++++|-
T Consensus 65 -~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SN 120 (303)
T 1o6z_A 65 -YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSN 120 (303)
T ss_dssp -GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCS
T ss_pred -HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 3447899999999997642 2334567899999999999999997 77888888765
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-05 Score=97.72 Aligned_cols=166 Identities=10% Similarity=0.039 Sum_probs=102.3
Q ss_pred hcCcEEEEeccccc-cchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCC
Q psy16252 95 YEGAEILMTGATGF-LGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGf-lG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~l 170 (545)
++||+++||||++. ||.++++.|++.|. +|++..|+.... ..+.+++ +...+...... .+. |++
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA---~Vvi~~r~~~~~-~~~~~~~----l~~~l~~~G~~~~~v~~Dvt---- 2201 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGGA---TVIATTSRLDDD-RLAFYKQ----LYRDHARFDATLWVVPANMA---- 2201 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTTC---EEEEEESCCSHH-HHHHHHH----HHHHHCCTTCEEEEEECCTT----
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCCC---EEEEEeCChhhh-hhHHHHH----HHHHHhhcCCeEEEEEecCC----
Confidence 67899999999999 99999999999975 677777764320 0111221 12222222222 233 888
Q ss_pred CCCHHHHHHHh----c-------CccEEEEcccc----cc------------chHHHHHHHHHhHHHHHHHHHHHHHc--
Q psy16252 171 GLSPDDKRLVT----S-------KVNLVFHCAAT----LR------------FDEELKEAIRTNMCATQTMLDLAKQC-- 221 (545)
Q Consensus 171 gl~~~~~~~l~----~-------~vd~Vih~Aa~----~~------------~~~~~~~~~~~Nv~gt~~ll~~a~~~-- 221 (545)
+.++++.++ + .+|++|||||. .. +...++..+++|+.++..+++.+...
T Consensus 2202 --d~~~v~~lv~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~ 2279 (3089)
T 3zen_D 2202 --SYSDIDKLVEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGA 2279 (3089)
T ss_dssp --CHHHHHHHHHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556665553 2 58999999997 21 12234556899999998888876542
Q ss_pred -cCCc---eEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHH
Q psy16252 222 -KNLK---MFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCE 297 (545)
Q Consensus 222 -~~~~---~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~ 297 (545)
.+.. .++..+|.. .+.. .....|+.||+..+.+.+.
T Consensus 2280 ~~~~g~~~~ii~~~ss~-~g~~---------------------------------------g~~~aYsASKaAl~~Ltrs 2319 (3089)
T 3zen_D 2280 ERDIASRLHVVLPGSPN-RGMF---------------------------------------GGDGAYGEAKSALDALENR 2319 (3089)
T ss_dssp HTTCCCCEEEEEEECSS-TTSC---------------------------------------SSCSSHHHHGGGHHHHHHH
T ss_pred HcCCCceeEEEEECCcc-cccC---------------------------------------CCchHHHHHHHHHHHHHHH
Confidence 1111 122111111 1100 0114699999988888776
Q ss_pred hc------cCCCEEEEccceeec
Q psy16252 298 EA------QFFPVCIFRPSIVIS 314 (545)
Q Consensus 298 ~~------~~l~~~i~Rp~~i~g 314 (545)
.+ .+++++.+-||.|-+
T Consensus 2320 lA~E~~~a~~IrVn~v~PG~v~t 2342 (3089)
T 3zen_D 2320 WSAEKSWAERVSLAHALIGWTKG 2342 (3089)
T ss_dssp HHHCSTTTTTEEEEEEECCCEEC
T ss_pred HHhccccCCCeEEEEEeecccCC
Confidence 55 357788888988864
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.4e-05 Score=74.64 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=57.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++++++||||+|++|++++..|++.|. +|++..|+. ++.++....+-.. ....++. |++ +
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~---~V~i~~R~~------~~~~~l~~~~~~~---~~~~~~~~D~~------~ 178 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGA---EVVLCGRKL------DKAQAAADSVNKR---FKVNVTAAETA------D 178 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSH------HHHHHHHHHHHHH---HTCCCEEEECC------S
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEECCH------HHHHHHHHHHHhc---CCcEEEEecCC------C
Confidence 3579999999999999999999999864 588888863 2222221111000 1223333 776 6
Q ss_pred HHHHHHHhcCccEEEEcccc
Q psy16252 174 PDDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~ 193 (545)
.+++.++++++|+|||+|+.
T Consensus 179 ~~~~~~~~~~~DvlVn~ag~ 198 (287)
T 1lu9_A 179 DASRAEAVKGAHFVFTAGAI 198 (287)
T ss_dssp HHHHHHHTTTCSEEEECCCT
T ss_pred HHHHHHHHHhCCEEEECCCc
Confidence 67888888999999999985
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=71.51 Aligned_cols=110 Identities=18% Similarity=0.137 Sum_probs=73.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCC----
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLS---- 173 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~---- 173 (545)
++|.|+||+|++|..++..|+..+. +..|.++.+.+ . +....-+. |...+ .-+.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~-~~ev~L~Di~~----~-~~~a~dL~---------------~~~~~-~~l~~~~~ 58 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAH----T-PGVAADLS---------------HIETR-ATVKGYLG 58 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSS----H-HHHHHHHT---------------TSSSS-CEEEEEES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CcEEEEEeCCc----c-HHHHHHHh---------------ccCcC-ceEEEecC
Confidence 5799999999999999999987753 45788888865 1 11111000 11110 0011
Q ss_pred HHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCc-eEEEE
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLK-MFTYV 230 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~-~~v~v 230 (545)
..+++++++++|+||++|+...- .....+....|+..++.+++.+.+. ... .++++
T Consensus 59 t~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~ 116 (314)
T 1mld_A 59 PEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICII 116 (314)
T ss_dssp GGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred CCCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEE
Confidence 14678888999999999997642 2223456789999999999988875 333 45554
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=1.4e-05 Score=78.65 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=72.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCE-----EEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKT-----IYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLG 171 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~-----V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lg 171 (545)
.++|.||||+|++|.+++..|+..+. ..+ ++++.+.+. .+.++....++.+ ....+..++.
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~-~~e~~~~~l~L~Di~~~----~~~~~g~a~DL~~----~~~~~~~~~~----- 68 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSV-FGKDQPIILVLLDITPM----MGVLDGVLMELQD----CALPLLKDVI----- 68 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTT-TCTTCCEEEEEECCGGG----HHHHHHHHHHHHH----TCCTTEEEEE-----
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCC-ccccCCCEEEEEeCCCc----cccchhhHhhhHh----hhhcccCCEE-----
Confidence 37899999999999999999987642 223 677766421 1112111110100 0000001111
Q ss_pred CCHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCc--eEEEEe
Q psy16252 172 LSPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLK--MFTYVS 231 (545)
Q Consensus 172 l~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~--~~v~vS 231 (545)
......+.++++|+|||+||..+ ...+..++++.|+..++++++.+.+. +.+ .++.+|
T Consensus 69 -~~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~-~~~~~~vivvs 129 (333)
T 5mdh_A 69 -ATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY-AKKSVKVIVVG 129 (333)
T ss_dssp -EESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH-SCTTCEEEECS
T ss_pred -EcCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcC
Confidence 01234556789999999999753 23344567899999999999999986 444 355555
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00014 Score=74.87 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=66.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++++|+|+| +|++|+++++.|++.|. +|++..|.. ++.+..... +. ....+. |+. +.
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~---~V~v~~R~~------~~a~~la~~----~~--~~~~~~~Dv~------d~ 59 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGI---KVTVACRTL------ESAKKLSAG----VQ--HSTPISLDVN------DD 59 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTC---EEEEEESSH------HHHHHTTTT----CT--TEEEEECCTT------CH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcC---EEEEEECCH------HHHHHHHHh----cC--CceEEEeecC------CH
Confidence 368999998 79999999999998753 688888863 122211100 00 011122 555 56
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHH--HhH-------HHHHHHHHHHHHccCCc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIR--TNM-------CATQTMLDLAKQCKNLK 225 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~--~Nv-------~gt~~ll~~a~~~~~~~ 225 (545)
+++.++++++|+|||+++......-....++ .|+ .++.+++++|++. +++
T Consensus 60 ~~l~~~l~~~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~a-Gv~ 118 (450)
T 1ff9_A 60 AALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDA-GIT 118 (450)
T ss_dssp HHHHHHHTTSSEEEECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHT-TCE
T ss_pred HHHHHHHcCCcEEEECCccccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHC-CCe
Confidence 7788888999999999986432211122222 232 3678999999987 654
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0014 Score=64.75 Aligned_cols=89 Identities=16% Similarity=0.006 Sum_probs=52.9
Q ss_pred cCcEEEEeccccccchHHHHHHH-hhCCCcCEEEEEecCCCCCCH---HHHHHhhHHHHHHhhhhcCCCcc--c-CCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLL-RSFPRVKTIYVIVRAKKNQSP---QQRIDKMLDTVAISLKFTCSTSK--E-SAQAP 168 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll-~~g~~v~~V~~l~R~~~~~~~---~~rl~~~~~~~~~~~~~~~~~~~--~-Dl~~~ 168 (545)
.+|++|||||+..+|.+....|. +.|. .|+++.|....... ......... .-..++......+ . |++
T Consensus 49 ~pK~vLVtGaSsGiGlA~AialAf~~GA---~vi~v~~~~~~~~~~~atag~~~~~a-~~~~i~~~G~~a~~i~~Dv~-- 122 (401)
T 4ggo_A 49 APKNVLVLGCSNGYGLASRITAAFGYGA---ATIGVSFEKAGSETKYGTPGWYNNLA-FDEAAKREGLYSVTIDGDAF-- 122 (401)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHHCC---EEEEEECCCCCCSSSCCCHHHHHHHH-HHHHHHHHTCCEEEEESCTT--
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhhCCC---CEEEEecCCcccccccccccchhHHH-HHHHHHHcCCCceeEeCCCC--
Confidence 36999999999999999988887 5543 56667665433211 000000000 1112222333322 2 887
Q ss_pred CCCCCHHHHHHHhc-------CccEEEEccccc
Q psy16252 169 DLGLSPDDKRLVTS-------KVNLVFHCAATL 194 (545)
Q Consensus 169 ~lgl~~~~~~~l~~-------~vd~Vih~Aa~~ 194 (545)
+++..+++++ ++|++||++|..
T Consensus 123 ----d~e~i~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 123 ----SDEIKAQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp ----SHHHHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred ----CHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 5666666554 789999999964
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.48 E-value=7.6e-05 Score=68.76 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=32.0
Q ss_pred cCcEEEEecc----------------ccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 96 EGAEILMTGA----------------TGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 96 ~~~~VlITGa----------------tGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
+||+|||||| ||.+|.++++.+++.|. .|+.+.|+..
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga---~V~lv~~~~~ 54 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGY---EVCLITTKRA 54 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTC---EEEEEECTTS
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence 4899999999 99999999999999976 6888888643
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00042 Score=58.90 Aligned_cols=100 Identities=10% Similarity=0.126 Sum_probs=60.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
.+++|+|+|+ |.+|..+++.|.+.|+ .|+++.|.. +++.. +.......+. |.. +.
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~---~v~~~d~~~------~~~~~--------~~~~~~~~~~~d~~------~~ 60 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGH---EVLAVDINE------EKVNA--------YASYATHAVIANAT------EE 60 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTC---CCEEEESCH------HHHHT--------TTTTCSEEEECCTT------CH
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCH------HHHHH--------HHHhCCEEEEeCCC------CH
Confidence 3578999998 9999999999999875 466666642 12211 1111111122 444 45
Q ss_pred HHHHHH-hcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecc
Q psy16252 175 DDKRLV-TSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA 233 (545)
Q Consensus 175 ~~~~~l-~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~ 233 (545)
+.+.++ .+++|+||++++.. .+.|. .++..+++. ++++++..++.
T Consensus 61 ~~l~~~~~~~~d~vi~~~~~~---------~~~~~----~~~~~~~~~-~~~~ii~~~~~ 106 (144)
T 2hmt_A 61 NELLSLGIRNFEYVIVAIGAN---------IQAST----LTTLLLKEL-DIPNIWVKAQN 106 (144)
T ss_dssp HHHHTTTGGGCSEEEECCCSC---------HHHHH----HHHHHHHHT-TCSEEEEECCS
T ss_pred HHHHhcCCCCCCEEEECCCCc---------hHHHH----HHHHHHHHc-CCCeEEEEeCC
Confidence 566655 67899999998752 01222 355667776 56666655544
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00014 Score=66.81 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=31.7
Q ss_pred hcCcEEEEecc----------------ccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGA----------------TGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGa----------------tGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
++||+|||||| ||.+|.++++.|.+.|. .|+++.|+.
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga---~V~l~~~~~ 58 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA---NVTLVSGPV 58 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC---EEEEEECSC
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCC---EEEEEECCc
Confidence 56899999999 79999999999999976 577666654
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00044 Score=68.09 Aligned_cols=115 Identities=8% Similarity=0.082 Sum_probs=71.9
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGL 172 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl 172 (545)
+|+++++|.|+||+|++|..++..|+..|. ..+|+++.+.. ++++....++-+.. .... ++.
T Consensus 4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~~------~k~~g~a~DL~~~~-~~~~----~i~------ 65 (343)
T 3fi9_A 4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPFA------VGLEGVAEEIRHCG-FEGL----NLT------ 65 (343)
T ss_dssp CCSCSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSCH------HHHHHHHHHHHHHC-CTTC----CCE------
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCCc------hhHHHHHHhhhhCc-CCCC----ceE------
Confidence 567789999999999999999999988863 33688776642 22222111111100 0000 111
Q ss_pred CHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCce
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKM 226 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~ 226 (545)
-..++.+.++++|+||++||..+ ...+..+....|+...+.+++.+.+. ..+.
T Consensus 66 ~t~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~-~p~a 119 (343)
T 3fi9_A 66 FTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSY-CPDC 119 (343)
T ss_dssp EESCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHH-CTTC
T ss_pred EcCCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCc
Confidence 01246667789999999999753 23334667899999999999998875 3444
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0024 Score=65.79 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=65.0
Q ss_pred hhhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCC
Q psy16252 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPD 169 (545)
Q Consensus 91 ~~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~ 169 (545)
+..-+++++|+|+|| |++|+.++..|++.+ + .+|++..|+.. +.+.... . .....+. |+.
T Consensus 17 ~~~~l~~k~VlIiGA-GgiG~aia~~L~~~~-g-~~V~v~~R~~~------ka~~la~----~---~~~~~~~~D~~--- 77 (467)
T 2axq_A 17 IEGRHMGKNVLLLGS-GFVAQPVIDTLAAND-D-INVTVACRTLA------NAQALAK----P---SGSKAISLDVT--- 77 (467)
T ss_dssp ------CEEEEEECC-STTHHHHHHHHHTST-T-EEEEEEESSHH------HHHHHHG----G---GTCEEEECCTT---
T ss_pred cccCCCCCEEEEECC-hHHHHHHHHHHHhCC-C-CeEEEEECCHH------HHHHHHH----h---cCCcEEEEecC---
Confidence 334456789999998 999999999999873 2 26888888632 2221111 0 0111222 554
Q ss_pred CCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHH-------h--HHHHHHHHHHHHHccCC
Q psy16252 170 LGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRT-------N--MCATQTMLDLAKQCKNL 224 (545)
Q Consensus 170 lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~-------N--v~gt~~ll~~a~~~~~~ 224 (545)
+.+++.++++++|+|||+++......-.....+. + ...+.++++.|++. ++
T Consensus 78 ---d~~~l~~~l~~~DvVIn~tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~a-Gv 137 (467)
T 2axq_A 78 ---DDSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKA-GI 137 (467)
T ss_dssp ---CHHHHHHHHHTSSEEEECSCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHH-TC
T ss_pred ---CHHHHHHHHcCCCEEEECCchhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHc-CC
Confidence 5567888888999999998864221111112221 1 13457788888876 54
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.002 Score=54.32 Aligned_cols=96 Identities=16% Similarity=0.092 Sum_probs=56.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|+|+|+|+ |++|..+++.|.+.|+ .|.++.|++ +++...... .....+. |.. +.+
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~---~v~~~d~~~------~~~~~~~~~-------~~~~~~~~d~~------~~~ 60 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGH---DIVLIDIDK------DICKKASAE-------IDALVINGDCT------KIK 60 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH-------CSSEEEESCTT------SHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCH------HHHHHHHHh-------cCcEEEEcCCC------CHH
Confidence 578999997 9999999999999864 677777753 122211110 0111122 443 444
Q ss_pred HHHHH-hcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 176 DKRLV-TSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 176 ~~~~l-~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
.+.+. ++++|+||++.... ..|. .+.+.++.. +.++++..
T Consensus 61 ~l~~~~~~~~d~vi~~~~~~----------~~~~----~~~~~~~~~-~~~~ii~~ 101 (140)
T 1lss_A 61 TLEDAGIEDADMYIAVTGKE----------EVNL----MSSLLAKSY-GINKTIAR 101 (140)
T ss_dssp HHHHTTTTTCSEEEECCSCH----------HHHH----HHHHHHHHT-TCCCEEEE
T ss_pred HHHHcCcccCCEEEEeeCCc----------hHHH----HHHHHHHHc-CCCEEEEE
Confidence 55443 56899999997531 1222 455566665 55666643
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0019 Score=65.49 Aligned_cols=97 Identities=15% Similarity=0.235 Sum_probs=62.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCc-CEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRV-KTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v-~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
++|+|+|| |++|+.+++.|++.+ ++ ..|.+..|+. ++.+..... +..........+. |++ +.+
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g-~~~~~V~v~~r~~------~~~~~la~~-l~~~~~~~~~~~~~D~~------d~~ 66 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNR-EVFSHITLASRTL------SKCQEIAQS-IKAKGYGEIDITTVDAD------SIE 66 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCT-TTCCEEEEEESCH------HHHHHHHHH-HHHTTCCCCEEEECCTT------CHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCceEEEEEECCH------HHHHHHHHH-hhhhcCCceEEEEecCC------CHH
Confidence 58999999 999999999999875 23 4788888863 222222111 1000001222333 776 667
Q ss_pred HHHHHhcC--ccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCc
Q psy16252 176 DKRLVTSK--VNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLK 225 (545)
Q Consensus 176 ~~~~l~~~--vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~ 225 (545)
++.+++++ +|+|||+|+... . ..++++|.+. ++.
T Consensus 67 ~l~~~l~~~~~DvVin~ag~~~---~------------~~v~~a~l~~-g~~ 102 (405)
T 4ina_A 67 ELVALINEVKPQIVLNIALPYQ---D------------LTIMEACLRT-GVP 102 (405)
T ss_dssp HHHHHHHHHCCSEEEECSCGGG---H------------HHHHHHHHHH-TCC
T ss_pred HHHHHHHhhCCCEEEECCCccc---C------------hHHHHHHHHh-CCC
Confidence 88888887 899999998531 0 3567777776 543
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0016 Score=62.08 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=25.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEec
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R 132 (545)
.++|.|+|+||.+|+.+++.+.+. ++. ++++.++
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~-~~~-elva~~d 38 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALAL-EGV-QLGAALE 38 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHS-TTE-ECCCEEC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-CCC-EEEEEEe
Confidence 479999999999999999998865 232 4554433
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.003 Score=53.50 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=48.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++|+|+|+ |.+|+++++.|.+.|+ .|+++.|++ ++++.. ......++. |.+ +++
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~---~V~~id~~~------~~~~~~--------~~~~~~~~~gd~~------~~~ 61 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGK---KVLAVDKSK------EKIELL--------EDEGFDAVIADPT------DES 61 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC---CEEEEESCH------HHHHHH--------HHTTCEEEECCTT------CHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEECCH------HHHHHH--------HHCCCcEEECCCC------CHH
Confidence 578999998 9999999999999876 577777753 222221 111222233 666 556
Q ss_pred HHHHH-hcCccEEEEccc
Q psy16252 176 DKRLV-TSKVNLVFHCAA 192 (545)
Q Consensus 176 ~~~~l-~~~vd~Vih~Aa 192 (545)
.+.++ .+++|+||.+.+
T Consensus 62 ~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 62 FYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp HHHHSCCTTCSEEEECCS
T ss_pred HHHhCCcccCCEEEEecC
Confidence 66655 458899998776
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0051 Score=59.70 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=66.5
Q ss_pred cEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
|+|.|+||+|.+|..++..|... +. +..++++.+.+ . ...+.++ +.. . .. .. .+.. .....
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~-~~el~L~Di~~-~-~~G~a~D--l~~----~--~~--~~-~v~~----~~~~~ 62 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIAP-V-TPGVAVD--LSH----I--PT--AV-KIKG----FSGED 62 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCT-TEEEEEECSST-T-HHHHHHH--HHT----S--CS--SE-EEEE----ECSSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC-CceEEEEecCC-C-chhHHHH--hhC----C--CC--Cc-eEEE----ecCCC
Confidence 57999999999999999888775 32 45788887764 1 1111110 000 0 00 00 1100 00011
Q ss_pred HHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 177 KRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
..+.++++|+||-+||..+ ...+..++++.|+.-.+.+.+.+.+.
T Consensus 63 ~~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~ 108 (312)
T 3hhp_A 63 ATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT 108 (312)
T ss_dssp CHHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455689999999999764 33445778899999999999988875
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0013 Score=65.90 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=57.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|+|.|| |++|+.+++.|.+. + .|.+..|+. ++++.... ....+. |+. +.+
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~~-~---~v~~~~~~~------~~~~~~~~---------~~~~~~~d~~------d~~ 69 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKDE-F---DVYIGDVNN------ENLEKVKE---------FATPLKVDAS------NFD 69 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTT-S---EEEEEESCH------HHHHHHTT---------TSEEEECCTT------CHH
T ss_pred ccEEEEECC-CHHHHHHHHHHhcC-C---CeEEEEcCH------HHHHHHhc---------cCCcEEEecC------CHH
Confidence 578999999 99999999988764 3 566666652 22222110 111122 665 678
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
.+.++++++|+||++++.. +. ..++++|.++
T Consensus 70 ~l~~~~~~~DvVi~~~p~~-~~--------------~~v~~~~~~~ 100 (365)
T 3abi_A 70 KLVEVMKEFELVIGALPGF-LG--------------FKSIKAAIKS 100 (365)
T ss_dssp HHHHHHTTCSEEEECCCGG-GH--------------HHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEecCCc-cc--------------chHHHHHHhc
Confidence 8999999999999998753 11 2577888887
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.014 Score=50.21 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=48.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh-hcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK-FTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~-~~~~~~~~-Dl~~~~lgl 172 (545)
..+++|+|.|+ |.+|..+++.|.+.|+ .|+++.|++... . .++ ......+. |..
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~---~V~vid~~~~~~------~--------~~~~~~g~~~~~~d~~------ 72 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSGH---SVVVVDKNEYAF------H--------RLNSEFSGFTVVGDAA------ 72 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCGGGG------G--------GSCTTCCSEEEESCTT------
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHHHH------H--------HHHhcCCCcEEEecCC------
Confidence 45789999996 9999999999999864 688888764321 1 011 01111111 332
Q ss_pred CHHHHHHH-hcCccEEEEcccc
Q psy16252 173 SPDDKRLV-TSKVNLVFHCAAT 193 (545)
Q Consensus 173 ~~~~~~~l-~~~vd~Vih~Aa~ 193 (545)
+.+.+.++ ++++|+||.+.+.
T Consensus 73 ~~~~l~~~~~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 73 EFETLKECGMEKADMVFAFTND 94 (155)
T ss_dssp SHHHHHTTTGGGCSEEEECSSC
T ss_pred CHHHHHHcCcccCCEEEEEeCC
Confidence 34455554 5789999998764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0056 Score=55.15 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+++|+||||+|.+|..+++.+...|. +|++..|+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~---~V~~~~~~ 72 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGA---RIYTTAGS 72 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC---EEEEEESS
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCC---EEEEEeCC
Confidence 479999999999999999999988864 68888775
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.065 Score=47.35 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=47.8
Q ss_pred cCcEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
.+++|+|.| .|.+|..+++.|.+. |+ .|+++.|++ +++... +......+. |.+ +
T Consensus 38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g~---~V~vid~~~------~~~~~~--------~~~g~~~~~gd~~------~ 93 (183)
T 3c85_A 38 GHAQVLILG-MGRIGTGAYDELRARYGK---ISLGIEIRE------EAAQQH--------RSEGRNVISGDAT------D 93 (183)
T ss_dssp TTCSEEEEC-CSHHHHHHHHHHHHHHCS---CEEEEESCH------HHHHHH--------HHTTCCEEECCTT------C
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhccCC---eEEEEECCH------HHHHHH--------HHCCCCEEEcCCC------C
Confidence 367899998 599999999999998 86 477777753 222221 111222222 444 4
Q ss_pred HHHHHHH--hcCccEEEEccc
Q psy16252 174 PDDKRLV--TSKVNLVFHCAA 192 (545)
Q Consensus 174 ~~~~~~l--~~~vd~Vih~Aa 192 (545)
.+.+.++ .+++|+||.+.+
T Consensus 94 ~~~l~~~~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 94 PDFWERILDTGHVKLVLLAMP 114 (183)
T ss_dssp HHHHHTBCSCCCCCEEEECCS
T ss_pred HHHHHhccCCCCCCEEEEeCC
Confidence 5566666 678999998765
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.012 Score=53.66 Aligned_cols=34 Identities=32% Similarity=0.285 Sum_probs=29.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
|+|+|+||+|++|+.++..|++.|+ +|++..|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~---~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH---EIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 4799999999999999999999865 677888863
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.026 Score=48.38 Aligned_cols=77 Identities=9% Similarity=0.100 Sum_probs=49.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++|+|+|+ |.+|+.+++.|.+.|+ .|.++.|.+. ...+++.... .....++. |.+ +++
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~---~V~vid~~~~--~~~~~~~~~~--------~~~~~~i~gd~~------~~~ 62 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQ---NVTVISNLPE--DDIKQLEQRL--------GDNADVIPGDSN------DSS 62 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTC---CEEEEECCCH--HHHHHHHHHH--------CTTCEEEESCTT------SHH
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC---CEEEEECCCh--HHHHHHHHhh--------cCCCeEEEcCCC------CHH
Confidence 578999996 9999999999999875 4777777421 0011121110 11222333 665 667
Q ss_pred HHHHH-hcCccEEEEcccc
Q psy16252 176 DKRLV-TSKVNLVFHCAAT 193 (545)
Q Consensus 176 ~~~~l-~~~vd~Vih~Aa~ 193 (545)
.+.++ ++++|+||-+.+.
T Consensus 63 ~l~~a~i~~ad~vi~~~~~ 81 (153)
T 1id1_A 63 VLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp HHHHHTTTTCSEEEECSSC
T ss_pred HHHHcChhhCCEEEEecCC
Confidence 77776 7899999987653
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.014 Score=57.65 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=58.4
Q ss_pred CcEEEEeccccccchHHHHHHHhhCC----CcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFP----RVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGL 172 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~----~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl 172 (545)
.++|+|.||||.+|+.|++.|+++++ .+ +|.++.+..+... .+... +..+.. ..|+...++
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~s~~~agk---~~~~~----~~~l~~-----~~~~~~~~~-- 73 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALTAATSAGS---TLGEH----HPHLTP-----LAHRVVEPT-- 73 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEEESSCTTS---BGGGT----CTTCGG-----GTTCBCEEC--
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEECCCcCCC---chhhh----cccccc-----cceeeeccC--
Confidence 47899999999999999999997630 33 5677764432111 01000 000000 002221111
Q ss_pred CHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccc
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSN 236 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~ 236 (545)
+.+ . +.++|+||-|++... +..++..+ +. + .++|-+|+.+-.
T Consensus 74 ~~~---~-~~~~DvVf~alg~~~---------------s~~~~~~~-~~-G-~~vIDlSa~~R~ 115 (352)
T 2nqt_A 74 EAA---V-LGGHDAVFLALPHGH---------------SAVLAQQL-SP-E-TLIIDCGADFRL 115 (352)
T ss_dssp CHH---H-HTTCSEEEECCTTSC---------------CHHHHHHS-CT-T-SEEEECSSTTTC
T ss_pred CHH---H-hcCCCEEEECCCCcc---------------hHHHHHHH-hC-C-CEEEEECCCccC
Confidence 322 2 358999999987532 23455555 54 5 468888988754
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.037 Score=53.90 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=59.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCcccCCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~Dl~~~~lgl~~ 174 (545)
++++|.|+|| |.+|..++..|+..+. +..|+++.+.. ++++.....+-+.... ... .+..
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~-~~el~l~D~~~------~k~~g~a~DL~~~~~~~~~~----~i~~------- 68 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGI-AQEIGIVDIFK------DKTKGDAIDLEDALPFTSPK----KIYS------- 68 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSCH------HHHHHHHHHHHTTGGGSCCC----EEEE-------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEeCCh------HHHHHHHhhHhhhhhhcCCc----EEEE-------
Confidence 4689999996 9999999999998854 45788877642 2222111111000000 000 1110
Q ss_pred HHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
.+ .+.++++|+||++||..+ ...+...+++.|+.-.+.+++.+.+. ....++.+
T Consensus 69 ~~-~~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilv 123 (326)
T 3vku_A 69 AE-YSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLV 123 (326)
T ss_dssp CC-GGGGTTCSEEEECCCCC----------------CHHHHHHHHHTT-TCCSEEEE
T ss_pred Cc-HHHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEE
Confidence 01 234689999999999754 23345667788999999999988875 34444433
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.049 Score=52.77 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=50.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCC-Cccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS-TSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~-~~~~-Dl~~~~lgl 172 (545)
.++++++|+|| |.+|+.++..|.+.| +.+|++..|.++. .++.++.... +..... .+.. ++.
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~G--a~~V~i~nR~~~~---~~~a~~la~~----~~~~~~~~~~~~~~~------ 215 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDG--VKEISIFNRKDDF---YANAEKTVEK----INSKTDCKAQLFDIE------ 215 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEECSSTT---HHHHHHHHHH----HHHHSSCEEEEEETT------
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCC--CCEEEEEECCCch---HHHHHHHHHH----hhhhcCCceEEeccc------
Confidence 35799999997 899999999999985 4578888887432 1222222111 110000 0000 222
Q ss_pred CHHHHHHHhcCccEEEEcccc
Q psy16252 173 SPDDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~ 193 (545)
+.+++.+.+.++|+||++...
T Consensus 216 ~~~~l~~~l~~aDiIINaTp~ 236 (315)
T 3tnl_A 216 DHEQLRKEIAESVIFTNATGV 236 (315)
T ss_dssp CHHHHHHHHHTCSEEEECSST
T ss_pred hHHHHHhhhcCCCEEEECccC
Confidence 335566777789999987653
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0099 Score=58.45 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=30.8
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.+++|+||||+|.+|..+++.+...|. +|++..|++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~---~Vi~~~~~~ 180 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGA---TVIGTVSTE 180 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTC---EEEEEESSH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 478999999999999999998888764 788888863
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.098 Score=50.93 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=69.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.++|.|+|+ |.+|..++..|+..|. +..|.++.+.. ++++....++-+.. .+.. ++. +...
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~-~~~l~l~D~~~------~k~~g~a~DL~~~~-----~~~~~~v~-----i~~~ 66 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGI-TDELVVIDVNK------EKAMGDVMDLNHGK-----AFAPQPVK-----TSYG 66 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSCH------HHHHHHHHHHHHTG-----GGSSSCCE-----EEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CceEEEEecch------HHHHHHHHHHHhcc-----ccccCCeE-----EEeC
Confidence 578999996 9999999999998864 35788887642 22222111110000 0000 110 0001
Q ss_pred HHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
++ +.++++|+||.+||..+- ..+...+...|+.-.+.+++.+.+. ....++.+
T Consensus 67 ~~-~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlv 120 (326)
T 3pqe_A 67 TY-EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLV 120 (326)
T ss_dssp CG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred cH-HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEE
Confidence 12 356799999999997542 3345667899999999999998885 34444433
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.063 Score=52.23 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=68.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.++|.|+|| |.+|..++..|+..+. +.+|.++.+........ ...+.. ...+..++. +...+
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~-~~ev~L~Di~~~~~~g~---~~dl~~--------~~~~~~~~~-----i~~~~ 68 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEKAIGE---AMDINH--------GLPFMGQMS-----LYAGD 68 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---CCHH---HHHHTT--------SCCCTTCEE-----EC--C
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChHHHHHH---HHHHHH--------hHHhcCCeE-----EEECC
Confidence 478999998 9999999999988754 56788888765433211 000000 000000110 01112
Q ss_pred HHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 177 KRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
.+.++++|+||.+++... ......+....|+.....+++.+.+. ....++.+.|
T Consensus 69 -~~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t 123 (318)
T 1y6j_A 69 -YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVS 123 (318)
T ss_dssp -GGGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECS
T ss_pred -HHHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 334689999999998753 22233566788999999999988875 4455555544
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.013 Score=57.57 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=27.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
++|+|.||||.+|+.+++.|+++++....++.+.
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~ 40 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA 40 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 6899999999999999999986655555666664
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.011 Score=58.07 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=30.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+++|+||||+|.+|..+++.+...|. +|++..|+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~---~V~~~~~~ 174 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGA---KLIGTVGT 174 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTC---EEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCC
Confidence 479999999999999999999988864 68888876
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.027 Score=55.05 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=27.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
++|+|.||||++|..|++.|.++ +++ ++..+.+..
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~-p~~-el~~l~s~~ 39 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRH-PHM-NITALTVSA 39 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHC-TTE-EEEEEEEET
T ss_pred eEEEEECCCChHHHHHHHHHHhC-CCC-cEEEEEecC
Confidence 68999999999999999988875 554 566665443
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.038 Score=54.15 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=30.2
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+++|+||||+|.+|..+++.+...|. +|++..|+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~---~V~~~~~~ 179 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGC---KVVGAAGS 179 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCC---EEEEEeCC
Confidence 479999999999999999998888764 68888775
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.067 Score=50.60 Aligned_cols=38 Identities=29% Similarity=0.552 Sum_probs=29.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+.++|.|.||+|.+|+.+++.+.+. ++..-|-++.|+.
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~-~~~eLv~~~d~~~ 43 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAA-PDATLVGALDRTG 43 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHC-TTEEEEEEBCCTT
T ss_pred cccEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEEecC
Confidence 3478999999999999999999876 4553344456654
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.073 Score=52.19 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=67.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhC---CCc-CEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSF---PRV-KTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDL 170 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g---~~v-~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~l 170 (545)
++.-+|.|+||+|.||..|+-.|.... .+. ..+.++...+. ...++...-+ +..-.......+.
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~----~~~~~Gva~D----L~~~~~~~~~~~~---- 89 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPA----LKALAGVEAE----LEDCAFPLLDKVV---- 89 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG----HHHHHHHHHH----HHHTTCTTEEEEE----
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCc----cccchhhhhh----hhhcCccCCCcEE----
Confidence 345699999999999999998776541 111 25666654321 1222211100 0000000000010
Q ss_pred CCCHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 171 GLSPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 171 gl~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
...+..+.++++|+||-+||..+ ...+..++++.|..-.+.+.+...+.
T Consensus 90 --~~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~ 139 (345)
T 4h7p_A 90 --VTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAV 139 (345)
T ss_dssp --EESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --EcCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhh
Confidence 01224566899999999999764 34556778899999999999988774
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.048 Score=53.83 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=30.7
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.+++|||+||+|.+|..+++.+...|. +|++..|++
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga---~V~~~~~~~ 204 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGY---RVLGIDGGE 204 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECST
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC---cEEEEcCCH
Confidence 479999999999999999988887754 788888864
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.045 Score=54.11 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=30.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.+++|+|+||+|.+|..++..+...|. +|++..|++
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga---~Vi~~~~~~ 205 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGL---KILGTAGTE 205 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCh
Confidence 478999999999999999998888764 688888763
|
| >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.0042 Score=49.81 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.8
Q ss_pred hcCCCeEEEEcchhhhHHHHHHHHHhhCC
Q psy16252 12 FYEGAEILMTGATGFLGKLLIEKLLRSFP 40 (545)
Q Consensus 12 ~~~~~~~f~~Ggts~l~~~Ll~~l~~~~~ 40 (545)
.-.+++||.+||+|+++.+|+.+|++.++
T Consensus 44 i~~~ddFF~lGG~SLla~rLv~~ir~~~g 72 (110)
T 2cq8_A 44 VEDSTDFFKSGAASVDVVRLVEEVKELCD 72 (110)
T ss_dssp CCTTCBHHHHHCCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHhcCChHHHHHHHHHHHHHHcC
Confidence 34578999999999999999999999876
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.088 Score=52.03 Aligned_cols=114 Identities=15% Similarity=0.055 Sum_probs=65.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCE---EEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKT---IYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~---V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lg 171 (545)
.+..+|.|+||+|.+|.+++-.|+..+. +.. |....-..+ ...+.++...-+ +......+..++. .
T Consensus 30 ~~~~KV~ViGAaG~VG~~la~~l~~~~l-~~e~~~l~L~d~d~~--~~~~~~~G~amD----L~h~~~p~~~~v~---i- 98 (375)
T 7mdh_A 30 KKLVNIAVSGAAGMISNHLLFKLASGEV-FGQDQPIALKLLGSE--RSFQALEGVAME----LEDSLYPLLREVS---I- 98 (375)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTTT-TCTTCCEEEEEECCG--GGHHHHHHHHHH----HHTTTCTTEEEEE---E-
T ss_pred CCCCEEEEECCCChHHHHHHHHHHcCCc-CCCCceeEEEecCcc--chhhhhHHHHHh----HHhhhhhhcCCcE---E-
Confidence 3468999999999999999999987632 222 433221111 112222221110 0000000000000 0
Q ss_pred CCHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 172 LSPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 172 l~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
. ..-.+.++++|+||-+||..+ ...+..++++.|+.-.+.+.+.+.+.
T Consensus 99 -~-~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~ 147 (375)
T 7mdh_A 99 -G-IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 147 (375)
T ss_dssp -E-SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -e-cCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 123455689999999999754 34456778899999999999888763
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.018 Score=57.04 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=30.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.+++|+|+||+|.+|..++..+...|. +|++..|++
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga---~Vi~~~~~~ 197 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGA---IPLVTAGSQ 197 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 479999999999999999998888754 788888763
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.041 Score=54.85 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=50.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
..+++|+|+|+ |.+|..+++.|...|. +|++..|+. ++++..... + ... +. |.. +
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga---~V~~~d~~~------~~~~~~~~~----~---g~~-~~~~~~------~ 219 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGA---QVTILDVNH------KRLQYLDDV----F---GGR-VITLTA------T 219 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----T---TTS-EEEEEC------C
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECCH------HHHHHHHHh----c---Cce-EEEecC------C
Confidence 56799999999 9999999999998864 688887763 222211110 0 000 11 322 4
Q ss_pred HHHHHHHhcCccEEEEccccc
Q psy16252 174 PDDKRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~ 194 (545)
.+++.++++++|+||++++..
T Consensus 220 ~~~l~~~~~~~DvVi~~~g~~ 240 (369)
T 2eez_A 220 EANIKKSVQHADLLIGAVLVP 240 (369)
T ss_dssp HHHHHHHHHHCSEEEECCC--
T ss_pred HHHHHHHHhCCCEEEECCCCC
Confidence 567788888999999998853
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.056 Score=53.22 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=28.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.++|.|.||||.+|+.+++.|.++ +++ +++.+.+.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-p~~-elv~v~s~ 38 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH-PYL-EVKQVTSR 38 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-TTE-EEEEEBCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-CCc-EEEEEECc
Confidence 478999999999999999999876 443 56666654
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.39 Score=45.83 Aligned_cols=115 Identities=13% Similarity=0.001 Sum_probs=70.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh--hcCCCcccCCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK--FTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~--~~~~~~~~Dl~~~~lgl~~~ 175 (545)
|+|.|+|| |.+|+.++..|+.++ -+.++.++...+. +.+....++.+... .....+.. ..
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~-~~~el~L~Di~~~------~~~G~a~DL~h~~~~~~~~~~i~~----------~~ 62 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAED------LAVGEAMDLAHAAAGIDKYPKIVG----------GA 62 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHH------HHHHHHHHHHHHHGGGTCCCEEEE----------ES
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCCEEEEEeCCCC------cchhhhhhhhcccccCCCCCeEec----------CC
Confidence 57999996 999999999998875 3567888766421 11110000111000 00000000 01
Q ss_pred HHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 176 DKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
++ +.++++|+||-.||..+ ...+..++++.|..-.+.+.+.+.+. ..+.++.+=|
T Consensus 63 d~-~~~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvs 118 (294)
T 2x0j_A 63 DY-SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT 118 (294)
T ss_dssp CG-GGGTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred CH-HHhCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 12 23579999999999764 34556778899999999999998886 4555554443
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.16 Score=47.49 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=31.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+++++|+|.|+ |.+|+.++..|.+.| +.+|.++.+..
T Consensus 29 l~~~~VlVvG~-Gg~G~~va~~La~~G--v~~i~lvD~d~ 65 (249)
T 1jw9_B 29 LKDSRVLIVGL-GGLGCAASQYLASAG--VGNLTLLDFDT 65 (249)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCB
T ss_pred HhCCeEEEEee-CHHHHHHHHHHHHcC--CCeEEEEcCCC
Confidence 55789999996 789999999999985 56888887765
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.061 Score=52.10 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=66.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
++|.|+|| |.+|..++..|+..|+ . .|.++.++.. ..+....-+.. ..... ... .+.. ..+
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~-~-~v~L~Di~~~---~~~g~~~dl~~~~~~~~--~~~----~i~~------t~d 64 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKEL-G-DIVLLDIVEG---VPQGKALDLYEASPIEG--FDV----RVTG------TNN 64 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-S-EEEEECSSSS---HHHHHHHHHHTTHHHHT--CCC----CEEE------ESC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-C-eEEEEeCCcc---HHHHHHHhHHHhHhhcC--CCe----EEEE------CCC
Confidence 68999998 9999999999988764 2 4777766532 11111111111 10000 000 0110 012
Q ss_pred HHHHhcCccEEEEccccccch-HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecc
Q psy16252 177 KRLVTSKVNLVFHCAATLRFD-EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA 233 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~-~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~ 233 (545)
+ +.++++|+||.+++...-. .........|+...+.+.+.+.+. ....++.+.|-
T Consensus 65 ~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~tN 120 (309)
T 1ur5_A 65 Y-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNN 120 (309)
T ss_dssp G-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECCS
T ss_pred H-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcCC
Confidence 3 4568999999999875422 222345677888888899888876 45666655543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.053 Score=53.20 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=30.2
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.+++|||+||+|.+|..+++.+...|. +|++..|++
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~ 184 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGC---RVVGIAGGA 184 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 479999999999999999988877754 788888763
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.24 Score=46.28 Aligned_cols=123 Identities=16% Similarity=0.117 Sum_probs=66.0
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHH--------HhhHHH-HHHhhhhcCCCcccC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRI--------DKMLDT-VAISLKFTCSTSKES 164 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl--------~~~~~~-~~~~~~~~~~~~~~D 164 (545)
.+++++|+|.|+ |.+|+.++..|.+.| +.++.++.+..-..+...|- -..... ....++.-++..--.
T Consensus 25 ~l~~~~VlvvG~-GglG~~va~~La~~G--vg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~ 101 (251)
T 1zud_1 25 KLLDSQVLIIGL-GGLGTPAALYLAGAG--VGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLT 101 (251)
T ss_dssp HHHTCEEEEECC-STTHHHHHHHHHHTT--CSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEE
T ss_pred HHhcCcEEEEcc-CHHHHHHHHHHHHcC--CCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEE
Confidence 356799999998 559999999999985 66888775543211110000 000000 112222212211000
Q ss_pred CCCCCCCCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccccc
Q psy16252 165 AQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNS 237 (545)
Q Consensus 165 l~~~~lgl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~ 237 (545)
.... .++.+.+.++++++|+||.+.... . .-..+.++|.+. + +.+|+.++....|
T Consensus 102 ~~~~--~~~~~~~~~~~~~~DvVi~~~d~~--~------------~r~~l~~~~~~~-~-~p~i~~~~~g~~G 156 (251)
T 1zud_1 102 ALQQ--RLTGEALKDAVARADVVLDCTDNM--A------------TRQEINAACVAL-N-TPLITASAVGFGG 156 (251)
T ss_dssp EECS--CCCHHHHHHHHHHCSEEEECCSSH--H------------HHHHHHHHHHHT-T-CCEEEEEEEBTEE
T ss_pred EEec--cCCHHHHHHHHhcCCEEEECCCCH--H------------HHHHHHHHHHHh-C-CCEEEEeccccce
Confidence 0111 135667788888999999875421 1 112445566664 4 4678777654443
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.097 Score=50.16 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=69.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHh---hHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK---MLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~---~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
|+|.|+|| |.+|..++..|...++ +..|.++.+.+. +++. .+......+. ... .+.- .
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~-~~~v~L~D~~~~------~~~g~~~dl~~~~~~~~-~~~----~i~~------t 61 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLD-VDEIALVDIAED------LAVGEAMDLAHAAAGID-KYP----KIVG------G 61 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSC-CSEEEEECSSHH------HHHHHHHHHHHHHHTTT-CCC----EEEE------E
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEECChH------HHHHHHHHHHhhhhhcC-CCC----EEEE------e
Confidence 57999999 9999999999988864 447888877632 2221 0111000000 000 1110 0
Q ss_pred HHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
.+ .+.++++|+||.+|+..+ ......++...|+.-.+.+++.+.+. ....++.+
T Consensus 62 ~d-~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iiv 116 (294)
T 1oju_A 62 AD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILV 116 (294)
T ss_dssp SC-GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEE
T ss_pred CC-HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEE
Confidence 12 346689999999999763 22345667889999999999988886 44444433
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.042 Score=52.24 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=47.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
.++++|+|+|+ |..|+.++..|.+.|. .+|++..|...... .+...--....
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~--~~v~v~~R~~~~a~-------------------------~la~~~~~~~~ 166 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVR--PTLTVANRTMSRFN-------------------------NWSLNINKINL 166 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCC--SCCEEECSCGGGGT-------------------------TCCSCCEEECH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEeCCHHHHH-------------------------HHHHhcccccH
Confidence 45789999997 8899999999999864 46777788743211 11110000133
Q ss_pred HHHHHHhcCccEEEEcccc
Q psy16252 175 DDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~ 193 (545)
+++.++++++|+||++...
T Consensus 167 ~~~~~~~~~aDiVInaTp~ 185 (277)
T 3don_A 167 SHAESHLDEFDIIINTTPA 185 (277)
T ss_dssp HHHHHTGGGCSEEEECCC-
T ss_pred hhHHHHhcCCCEEEECccC
Confidence 5566667889999998543
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.044 Score=54.24 Aligned_cols=166 Identities=17% Similarity=0.154 Sum_probs=80.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
++.++|.|.||||.+|+.+++.|.++ +++ +|+++.+..+.. .++... +..++.. ...|+..
T Consensus 14 M~~~kV~IiGAtG~iG~~llr~L~~~-p~~-elvai~~~~~~g---~~~~~~----~~~~~~~---v~~dl~~------- 74 (359)
T 1xyg_A 14 EKDIRIGLLGASGYTGAEIVRLLANH-PHF-QVTLMTADRKAG---QSMESV----FPHLRAQ---KLPTLVS------- 74 (359)
T ss_dssp -CCEEEEEECCSSHHHHHHHHHHHTC-SSE-EEEEEBCSTTTT---SCHHHH----CGGGTTS---CCCCCBC-------
T ss_pred ccCcEEEEECcCCHHHHHHHHHHHcC-CCc-EEEEEeCchhcC---CCHHHh----CchhcCc---cccccee-------
Confidence 44578999999999999999999886 444 566666543211 122111 1111100 0002221
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHH
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYS 254 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~ 254 (545)
++ ++.++++|+||-|++.... ...+..+ +. ++ ++|-.|+.+-..+ ...-|+.|..+....
T Consensus 75 ~~-~~~~~~vDvVf~atp~~~s---------------~~~a~~~-~a-G~-~VId~sa~~R~~~-~~~y~~~y~~~~~~~ 134 (359)
T 1xyg_A 75 VK-DADFSTVDAVFCCLPHGTT---------------QEIIKEL-PT-AL-KIVDLSADFRLRN-IAEYEEWYGQPHKAV 134 (359)
T ss_dssp GG-GCCGGGCSEEEECCCTTTH---------------HHHHHTS-CT-TC-EEEECSSTTTCSC-HHHHHHHHSSCCSCH
T ss_pred cc-hhHhcCCCEEEEcCCchhH---------------HHHHHHH-hC-CC-EEEECCccccCCc-hhhhhhhhcCCcCCh
Confidence 11 3344689999999865321 2334445 44 54 5787887754321 011233333333322
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA 299 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~ 299 (545)
+++...---+.+-..+.+.....-..|+.|+-.=..+=.-+.+..
T Consensus 135 ~~l~~~vygvpE~n~~~i~~~~iIanpgC~tt~~~~~l~pL~~~~ 179 (359)
T 1xyg_A 135 ELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKAN 179 (359)
T ss_dssp HHHTTCEECCHHHHHHHHHTCSEEECCCHHHHHHHHHHHHHHHTT
T ss_pred hhcCCceEECCccCHHHhccCCEEECCCcHHHHHHHHHHHHHHcC
Confidence 222210000111111111111223446788877777666666543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.12 Score=50.92 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=30.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+++|||+||+|.+|..++..+...|. +|++..|+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~---~Vi~~~~~ 200 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGA---RVIATAGS 200 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCC
Confidence 478999999999999999988887754 78888876
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.06 Score=52.93 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=31.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
.|++|+|+||+|.+|...+..+...|. +|++..|++.
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~ 180 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNF---RLIAVTRNNK 180 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESSST
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 479999999999999999887777754 7888888754
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.24 Score=47.88 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=67.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
|+|.|+|| |.+|..++..|+..+. +..|+++.+.+.. .+.....+.+ .+... ... .+... .
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~-~~el~l~D~~~~k---~~g~a~DL~~~~~~~~--~~~----~v~~~-------~ 62 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDV-AKEVVMVDIKDGM---PQGKALDMRESSPIHG--FDT----RVTGT-------N 62 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-SSEEEEECSSTTH---HHHHHHHHHHHHHHHT--CCC----EEEEE-------S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCchHH---HHHHHHHHhccccccC--CCc----EEEEC-------C
Confidence 57999997 9999999999998864 4578888776532 1111111111 11000 001 11100 0
Q ss_pred HHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 177 KRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
..+.++++|+||-+|+..+ ...+..+++..|+.-.+.+++.+.+. ....++.+
T Consensus 63 ~~~a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~viv 116 (314)
T 3nep_X 63 DYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIV 116 (314)
T ss_dssp SSGGGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEE
T ss_pred CHHHhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEe
Confidence 1235678999999999753 22334667899999999999988875 44444433
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.17 Score=49.06 Aligned_cols=107 Identities=17% Similarity=0.046 Sum_probs=66.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
+.++|.|+|| |.+|..++..|+..+. . .|+++.+.+.. .+.....+.+ .+. . .... .+.- .
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~-~-~v~l~Di~~~~---~~g~a~dL~~~~~~-~-~~~~----~v~~------t 65 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQL-G-DVVLFDIAQGM---PNGKALDLLQTCPI-E-GVDF----KVRG------T 65 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSSSH---HHHHHHHHHTTHHH-H-TCCC----CEEE------E
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-c-eEEEEeCChHH---HHHHHHHHHhhhhh-c-CCCc----EEEE------c
Confidence 3578999995 9999999999988754 2 78888776432 1111111111 100 0 0001 1110 0
Q ss_pred HHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
.++ +.++++|+||.+|+..+ ...+..+.+..|+.-.+.+++.+.+.
T Consensus 66 ~d~-~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~ 112 (321)
T 3p7m_A 66 NDY-KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN 112 (321)
T ss_dssp SCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCH-HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 112 46689999999998753 22334567788999999999988875
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.079 Score=50.23 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=29.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
+++++|+|+|+ |.+|+.++..|.+.| .+|++..|+
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G---~~V~v~~R~ 151 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLD---CAVTITNRT 151 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcC---CEEEEEECC
Confidence 35799999998 679999999999986 378888776
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.11 Score=51.41 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=30.0
Q ss_pred cC--cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EG--AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~--~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+ ++|+||||+|.+|..++..+...|. .+|++..|+
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga--~~Vi~~~~~ 195 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGC--SRVVGICGT 195 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTC--SEEEEEESC
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCC--CeEEEEeCC
Confidence 36 8999999999999999988887753 378888775
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.12 Score=50.27 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=30.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+++|+|+||+|.+|...+..+...|. +|++..|+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~ 174 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGA---KLIGTVSS 174 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESS
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEeCC
Confidence 479999999999999999988887764 78888875
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.39 Score=46.51 Aligned_cols=117 Identities=13% Similarity=0.195 Sum_probs=70.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
+.++|.|+|| |.+|..++..|+..+. +..|.++.+.+ ++++.....+-+.. .++. ++. +..
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~-~~ei~L~Di~~------~~~~g~~~dl~~~~-----~~~~~~~~-----v~~ 66 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSI-VDELVIIDLDT------EKVRGDVMDLKHAT-----PYSPTTVR-----VKA 66 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCS-CSEEEEECSCH------HHHHHHHHHHHHHG-----GGSSSCCE-----EEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh------hHhhhhhhhHHhhh-----hhcCCCeE-----EEe
Confidence 3579999999 9999999999988753 45777776542 23332111111110 0110 111 000
Q ss_pred HHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
+..+.++++|+||-+|+...- ..........|+.-.+.+++.+.+. ....++.+.|
T Consensus 67 -~~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t 123 (317)
T 3d0o_A 67 -GEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVAT 123 (317)
T ss_dssp -CCGGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred -CCHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 113446899999999987532 2334456788998889999888876 4555555544
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.16 Score=49.95 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=30.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+++|||+||+|.+|..+++.+...|. +|++..|+
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~---~V~~~~~~ 189 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGC---YVVGSAGS 189 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCC
Confidence 479999999999999999988887753 68888875
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.19 Score=49.15 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=68.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.++|.|.|| |.+|..++..|...|+ + .|.+..+++. ..+.....+......+. ... .+. ...+
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~-~-~V~L~D~~~~---~~~~~~~~l~~~~~~~~-~~~----~i~------~t~d 71 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALREL-A-DVVLYDVVKG---MPEGKALDLSHVTSVVD-TNV----SVR------AEYS 71 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-C-EEEEECSSSS---HHHHHHHHHHHHHHHTT-CCC----CEE------EECS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEECChh---HHHHHHHHHHhhhhccC-CCC----EEE------EeCC
Confidence 478999998 9999999999998865 2 4777777642 12221111111111010 000 111 0124
Q ss_pred HHHHhcCccEEEEccccccc-hH-----HHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-DE-----ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-~~-----~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
+++.++++|+||-+++...- .. ........|+.-.+.+++.+.+. ....++.+.|
T Consensus 72 ~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~t 132 (331)
T 1pzg_A 72 YEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVT 132 (331)
T ss_dssp HHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred HHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEc
Confidence 56577899999999976431 11 12334577888888888887775 3444544444
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.18 Score=48.44 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=49.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCC--CCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAP--DLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~--~lgl 172 (545)
..+++|+|+|+ |.+|+.++..|++.| ..+|++..|.. ++.+.... .+... .. .
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G--~~~V~v~nR~~------~ka~~la~---------------~~~~~~~~~-~ 193 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTA--AERIDMANRTV------EKAERLVR---------------EGDERRSAY-F 193 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTT--CSEEEEECSSH------HHHHHHHH---------------HSCSSSCCE-E
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCC--CCEEEEEeCCH------HHHHHHHH---------------HhhhccCce-e
Confidence 35789999997 779999999999985 34788888863 22222111 11100 00 1
Q ss_pred CHHHHHHHhcCccEEEEccccc
Q psy16252 173 SPDDKRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~~ 194 (545)
+.+++.+.+.++|+||++.+..
T Consensus 194 ~~~~~~~~~~~aDivIn~t~~~ 215 (297)
T 2egg_A 194 SLAEAETRLAEYDIIINTTSVG 215 (297)
T ss_dssp CHHHHHHTGGGCSEEEECSCTT
T ss_pred eHHHHHhhhccCCEEEECCCCC
Confidence 2345667778999999998754
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=92.99 E-value=0.04 Score=52.59 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=31.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.++++++|+|| |.+|+.++..|.+.| +.+|++..|..
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G--~~~v~i~~R~~ 161 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHG--VQKLQVADLDT 161 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTT--CSEEEEECSSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEECCH
Confidence 45799999998 889999999999985 45788888863
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.074 Score=52.33 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=30.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.|++|||+||+|.+|...+..+...|. +|++..|++
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga---~Vi~~~~~~ 194 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGA---KVIAVVNRT 194 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 479999999999999999988877754 788888864
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.21 Score=45.43 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=46.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+|+|+ |.+|+++++.|.+.|+ .|.++.|++ +++...... ....++. |.+ +.+.
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~---~v~vid~~~------~~~~~l~~~-------~~~~~i~gd~~------~~~~ 57 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKY---GVVIINKDR------ELCEEFAKK-------LKATIIHGDGS------HKEI 57 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTC---CEEEEESCH------HHHHHHHHH-------SSSEEEESCTT------SHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCH------HHHHHHHHH-------cCCeEEEcCCC------CHHH
Confidence 57999996 9999999999999876 466776653 222221110 1122232 665 5666
Q ss_pred HHHH-hcCccEEEEccc
Q psy16252 177 KRLV-TSKVNLVFHCAA 192 (545)
Q Consensus 177 ~~~l-~~~vd~Vih~Aa 192 (545)
+.++ ++++|+||-+.+
T Consensus 58 l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 58 LRDAEVSKNDVVVILTP 74 (218)
T ss_dssp HHHHTCCTTCEEEECCS
T ss_pred HHhcCcccCCEEEEecC
Confidence 7765 678999996654
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.049 Score=52.66 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=31.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.++++++|+|| |..|+.++..|.+.| +.+|++..|..
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G--~~~v~v~nRt~ 182 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEG--IKEIKLFNRKD 182 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEECSS
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcC--CCEEEEEECCC
Confidence 35799999997 889999999999984 45888888874
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.15 Score=50.30 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=30.5
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.+++|+|+||+|.+|...+..+...|. +|++..|++
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga---~Vi~~~~~~ 202 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGA---EVYATAGST 202 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 478999999999999999988887754 688888763
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.27 Score=48.60 Aligned_cols=34 Identities=12% Similarity=0.300 Sum_probs=24.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCC-CcCEEEEEe
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFP-RVKTIYVIV 131 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~-~v~~V~~l~ 131 (545)
++|.|.||||++|..|++.||...+ ...++..+.
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s 35 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFS 35 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEe
Confidence 4789999999999999995554422 134565553
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.046 Score=53.93 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=48.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
.+++|+|+||+|.+|..++..+... |. +|++..|++ ++++.... + ....+-|..+.+ ..
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga---~Vi~~~~~~------~~~~~~~~-----~---g~~~~~~~~~~~---~~ 229 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGA---TIIGVDVRE------EAVEAAKR-----A---GADYVINASMQD---PL 229 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCC---EEEEEESSH------HHHHHHHH-----H---TCSEEEETTTSC---HH
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCC---eEEEEcCCH------HHHHHHHH-----h---CCCEEecCCCcc---HH
Confidence 4789999999999999999888887 64 688887753 22221110 0 111110333221 12
Q ss_pred HHHHHHh--cCccEEEEcccc
Q psy16252 175 DDKRLVT--SKVNLVFHCAAT 193 (545)
Q Consensus 175 ~~~~~l~--~~vd~Vih~Aa~ 193 (545)
+.+.++. .++|+||++++.
T Consensus 230 ~~~~~~~~~~~~d~vi~~~g~ 250 (347)
T 1jvb_A 230 AEIRRITESKGVDAVIDLNNS 250 (347)
T ss_dssp HHHHHHTTTSCEEEEEESCCC
T ss_pred HHHHHHhcCCCceEEEECCCC
Confidence 3355555 379999999985
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=92.79 E-value=0.23 Score=48.00 Aligned_cols=112 Identities=10% Similarity=0.022 Sum_probs=68.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCcccCCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~Dl~~~~lgl~~~~ 176 (545)
++|.|+|| |.+|..++..|+..+. +.+|.++.+.. ++++.....+-+.... ... .+.. .+
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~-~~el~L~Di~~------~k~~g~a~dl~~~~~~~~~~----~v~~-------~~ 61 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGV-AREVVLVDLDR------KLAQAHAEDILHATPFAHPV----WVWA-------GS 61 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH------HHHHHHHHHHHTTGGGSCCC----EEEE-------CC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh------hHHHHHHHHHHHhHhhcCCe----EEEE-------CC
Confidence 57999998 9999999999988753 56788887752 3333211111110000 000 1110 11
Q ss_pred HHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 177 KRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
.+.++++|+||.+|+... ...........|+.-.+.+++.+.+. ....++.+
T Consensus 62 -~~a~~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 114 (310)
T 2xxj_A 62 -YGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLV 114 (310)
T ss_dssp -GGGGTTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred -HHHhCCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEE
Confidence 334689999999998753 22334456788999999999888875 34444433
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.11 Score=50.32 Aligned_cols=108 Identities=12% Similarity=0.036 Sum_probs=66.5
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhh--hhcCCCcccCCCCCCCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISL--KFTCSTSKESAQAPDLGLS 173 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~--~~~~~~~~~Dl~~~~lgl~ 173 (545)
+.++|.|.|+ |.+|..++..|...|. ..|.++.+.+. .++.+.....+.+.. ..... .+.-
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~--~~v~l~D~~~~----~~~~~g~a~dl~~~~~~~~~~~----~i~~------ 69 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKEL--ADVVLVDIPQL----ENPTKGKALDMLEASPVQGFDA----NIIG------ 69 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCGGG----HHHHHHHHHHHHHHHHHHTCCC----CEEE------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEeccch----HHHHHHhhhhHHHhhhhccCCC----EEEE------
Confidence 3578999997 9999999999998865 47888877521 111111111111110 00001 1110
Q ss_pred HHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
..+ .+.++++|+||-+||..+ ...+..+++..|+.-.+.+++.+.+.
T Consensus 70 t~d-~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~ 117 (315)
T 3tl2_A 70 TSD-YADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH 117 (315)
T ss_dssp ESC-GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC-HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 001 134689999999998754 23345667899999999999888875
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.22 Score=49.14 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=26.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEec
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R 132 (545)
..+|.|.||||++|..|++.|.++ +.+ ++..+..
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~h-P~~-el~~l~S 40 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNH-PYI-KPAYLAG 40 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTC-SSE-EEEEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEEC
Confidence 468999999999999999977664 544 5655543
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.22 Score=49.14 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=26.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEec
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R 132 (545)
..+|.|.||||++|..|++.|.++ +.+ ++..+..
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~h-P~~-el~~l~S 40 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNH-PYI-KPAYLAG 40 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTC-SSE-EEEEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEEC
Confidence 468999999999999999977664 544 5655543
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.45 Score=46.15 Aligned_cols=109 Identities=12% Similarity=0.011 Sum_probs=65.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
++.++|.|+|| |.+|..++..|...+. . .|.++.+.+.. .+.....+.+..... .... .+.- .
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~-~-~v~L~Di~~~~---~~g~~~dl~~~~~~~-~~~~----~v~~------t 67 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKEL-G-DVVLFDIAEGT---PQGKGLDIAESSPVD-GFDA----KFTG------A 67 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSSSH---HHHHHHHHHHHHHHH-TCCC----CEEE------E
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEeCCchh---HHHHHHHHhchhhhc-CCCC----EEEE------e
Confidence 34679999998 9999999999988865 2 78888776532 111111111100000 0011 1110 0
Q ss_pred HHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
.++ +.++++|+||.+|+..+ ...+..+++..|+.-.+.+++.+.+.
T Consensus 68 ~d~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~ 114 (324)
T 3gvi_A 68 NDY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY 114 (324)
T ss_dssp SSG-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCH-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH
Confidence 123 46689999999998753 22334456788999999999888875
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=92.60 E-value=0.1 Score=50.18 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=30.2
Q ss_pred hcCcE-EEEec-cc-----------------cccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 95 YEGAE-ILMTG-AT-----------------GFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 95 ~~~~~-VlITG-at-----------------GflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
..|++ ||||+ +| |-.|.++++.+++.|+ .|+.+.|+..
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga---~V~lv~g~~s 90 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGY---GVLFLYRARS 90 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTC---EEEEEEETTS
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCC---EEEEEecCCC
Confidence 34677 99985 56 8899999999999986 6777777644
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.21 Score=48.78 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=29.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+++|||+||+|.+|...+..+...|. +|++..|+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~ 182 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGA---HTIAVAST 182 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCC
Confidence 479999999999999999988777653 78888875
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.36 Score=47.54 Aligned_cols=33 Identities=18% Similarity=0.492 Sum_probs=27.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
..+|.|.||||.+|+.+++.|.++ +++ +|.++.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-p~~-elvai~ 36 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKH-PYL-ELVKVS 36 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTC-SSE-EEEEEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhC-CCc-EEEEEe
Confidence 478999999999999999988876 444 677775
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.14 Score=50.75 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=29.7
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+++|||+||+|.+|...+..+...|. +|++..|+
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga---~Vi~~~~~ 197 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKC---HVIGTCSS 197 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEECC
Confidence 478999999999999999988877754 68888876
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.38 Score=46.80 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=67.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.++|.|+|| |.+|..++..|+..+. +..|.++.+.. ++++.....+-+.. .+..++.- ...
T Consensus 9 ~~KI~IiGa-G~vG~~la~~l~~~~~-~~el~L~Di~~------~~~~g~~~dl~~~~-----~~~~~~~i-----~~~- 69 (326)
T 2zqz_A 9 HQKVILVGD-GAVGSSYAYAMVLQGI-AQEIGIVDIFK------DKTKGDAIDLSNAL-----PFTSPKKI-----YSA- 69 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSCH------HHHHHHHHHHHTTG-----GGSCCCEE-----EEC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCC-CCEEEEEeCCc------hHhHHHHHHHHHHH-----HhcCCeEE-----EEC-
Confidence 478999999 9999999999988753 56788887642 33332111111100 00001100 001
Q ss_pred HHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
..+.++++|+||.+|+...- ......+...|+.-.+.+++.+.+. ....++.+
T Consensus 70 ~~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 123 (326)
T 2zqz_A 70 EYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLV 123 (326)
T ss_dssp CGGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEE
T ss_pred CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence 13346899999999987532 2233456788999999999888775 33443333
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.19 Score=42.20 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=47.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.++|+|.|+ |.+|..+++.|.+.|+ .|+++.|++ ++++.. +.....++. |.+ +++
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~---~v~vid~~~------~~~~~~--------~~~g~~~i~gd~~------~~~ 62 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDI---PLVVIETSR------TRVDEL--------RERGVRAVLGNAA------NEE 62 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTC---CEEEEESCH------HHHHHH--------HHTTCEEEESCTT------SHH
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCC---CEEEEECCH------HHHHHH--------HHcCCCEEECCCC------CHH
Confidence 367999996 9999999999999876 577777753 222221 111222222 555 455
Q ss_pred HHHHH-hcCccEEEEcccc
Q psy16252 176 DKRLV-TSKVNLVFHCAAT 193 (545)
Q Consensus 176 ~~~~l-~~~vd~Vih~Aa~ 193 (545)
.+.++ .+++|+||-+...
T Consensus 63 ~l~~a~i~~ad~vi~~~~~ 81 (140)
T 3fwz_A 63 IMQLAHLECAKWLILTIPN 81 (140)
T ss_dssp HHHHTTGGGCSEEEECCSC
T ss_pred HHHhcCcccCCEEEEECCC
Confidence 56554 4688999877553
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=92.33 E-value=0.14 Score=50.29 Aligned_cols=49 Identities=35% Similarity=0.571 Sum_probs=35.3
Q ss_pred CCCCCCChhhhcCCCeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecc
Q psy16252 2 GTSSPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 51 (545)
Q Consensus 2 ~~~~~~~~~~~~~~~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~ 51 (545)
|.-+++++.++++++.+++|||||++|..|+..|++.. ...+|..+.|.
T Consensus 8 ~~~~~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~-g~~~V~~~~r~ 56 (344)
T 2gn4_A 8 GSMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSRD 56 (344)
T ss_dssp --------CCTTTTCEEEEETTTSHHHHHHHHHHHHHC-CCSEEEEEESC
T ss_pred CCCCCccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhC-CCCEEEEEECC
Confidence 45578899999999999999999999999999999872 33477777773
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=92.30 E-value=0.82 Score=44.43 Aligned_cols=117 Identities=12% Similarity=0.101 Sum_probs=69.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
...++|.|+|| |.+|..++..|+..|. +..|+++.+.. ++++.....+-+........ .+.. .
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~-~~el~L~Di~~------~~~~g~a~DL~~~~~~~~~~---~i~~------~ 79 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDL-ADELALVDVIE------DKLKGEMMDLQHGSLFLKTP---KIVS------S 79 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSCH------HHHHHHHHHHHHTGGGCSCC---EEEE------C
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-CceEEEEeCCh------HHHHHHHHhhhhhhhccCCC---eEEE------c
Confidence 34689999998 9999999999998753 45788877642 22222111111000000000 1100 0
Q ss_pred HHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
.+++ .++++|+||.+||..+ ...+..++++.|+.-.+.+.+.+.+. ....++.+
T Consensus 80 ~d~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlv 134 (331)
T 4aj2_A 80 KDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLI 134 (331)
T ss_dssp SSGG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred CCHH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence 1233 4689999999999754 22334567799999999999888875 44444433
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.04 E-value=0.32 Score=47.20 Aligned_cols=113 Identities=11% Similarity=0.092 Sum_probs=65.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCcccCCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~Dl~~~~lgl~~~ 175 (545)
.++|.|+|| |.+|..++..|+..+. +.+|.++.+.. ++++.....+-+.... ... .+.. .
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~-~~el~L~Di~~------~~~~g~~~dl~~~~~~~~~~----~v~~-------~ 65 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVK------DRTKGDALDLEDAQAFTAPK----KIYS-------G 65 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH------HHHHHHHHHHHGGGGGSCCC----EEEE-------C
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCC-CCEEEEEeCCc------hHHHHHHHHHHHHHHhcCCe----EEEE-------C
Confidence 378999998 9999999999988753 56788887742 3333211111111000 000 1110 1
Q ss_pred HHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
..+.++++|+||.+|+...- .....+....|+.-.+.+++.+.+. ....++.+
T Consensus 66 -~~~a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 119 (318)
T 1ez4_A 66 -EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLV 119 (318)
T ss_dssp -CGGGGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred -CHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 13346899999999987532 2233456688999999999888886 44444433
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.44 Score=47.12 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=27.3
Q ss_pred cEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~ 133 (545)
++|.|.||||++|+.|++.|+.. .+.+..|+.+...
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~ 38 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS 38 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC
Confidence 57999999999999999965554 2235577777654
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=91.79 E-value=0.13 Score=50.40 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=26.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
-+|.|.||||++|..|++.|.++ +.+ ++..+.
T Consensus 14 ~~V~IvGAtG~vG~ellrlL~~h-P~~-el~~l~ 45 (351)
T 1vkn_A 14 IRAGIIGATGYTGLELVRLLKNH-PEA-KITYLS 45 (351)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHC-TTE-EEEEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHcC-CCc-EEEEEe
Confidence 58999999999999999999987 544 666654
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.028 Score=43.73 Aligned_cols=29 Identities=3% Similarity=0.029 Sum_probs=25.5
Q ss_pred hcCCCeEEEEcchhhhHHHHHHHHHhhCC
Q psy16252 12 FYEGAEILMTGATGFLGKLLIEKLLRSFP 40 (545)
Q Consensus 12 ~~~~~~~f~~Ggts~l~~~Ll~~l~~~~~ 40 (545)
.-.+++||.+||+|+++.+|+.+|.+.++
T Consensus 34 i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g 62 (93)
T 4i4d_A 34 VGPHEDFAALGGNSIHAIXITNRVEELVD 62 (93)
T ss_dssp CCTTCCTTTTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHcCCcHHHHHHHHHHHHHHhC
Confidence 44578999999999999999999999864
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=91.55 E-value=0.11 Score=49.97 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=30.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
.|++|+|+||+|.+|...+..+...|. +|++..|++.
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga---~Vi~~~~~~~ 161 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGL---RVLAAASRPE 161 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 478999999999999999987777653 7888888643
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A | Back alignment and structure |
|---|
Probab=91.28 E-value=0.048 Score=42.15 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=25.6
Q ss_pred cCCCeEEEEcchhhhHHHHHHHHHhhCCC
Q psy16252 13 YEGAEILMTGATGFLGKLLIEKLLRSFPR 41 (545)
Q Consensus 13 ~~~~~~f~~Ggts~l~~~Ll~~l~~~~~~ 41 (545)
-.+++||.+||+|+.+.+|+.+|.+.++.
T Consensus 33 ~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~ 61 (91)
T 1dny_A 33 GILDNFFQIGGHSLKAMAVAAQVHREYQV 61 (91)
T ss_dssp CSSCCTTSSCCSSHHHHHHHHHHHHHCCC
T ss_pred CCCCCHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 35789999999999999999999998743
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=91.27 E-value=1.2 Score=43.08 Aligned_cols=112 Identities=10% Similarity=0.059 Sum_probs=67.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc-CCCcccCCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT-CSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~Dl~~~~lgl~~~ 175 (545)
.++|.|+|+ |.+|..++..|+..|. +..|.++.+.. ++++.....+.+..... ...+.. ..
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~g~-~~ev~L~Di~~------~~~~g~a~DL~~~~~~~~~~~i~~----------t~ 82 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMKDL-ADEVALVDVME------DKLKGEMMDLEHGSLFLHTAKIVS----------GK 82 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHHCC-CSEEEEECSCH------HHHHHHHHHHHHHGGGSCCSEEEE----------ES
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEECCH------HHHHHHHHHhhhhhhcccCCeEEE----------cC
Confidence 589999999 9999999999998864 45788877642 22222111111111000 001110 01
Q ss_pred HHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEE
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFT 228 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v 228 (545)
+++. ++++|+||-+||..+- ..+..++...|+.-.+.+++.+.+. ....++
T Consensus 83 d~~~-~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~i 134 (330)
T 3ldh_A 83 DYSV-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLK 134 (330)
T ss_dssp SSCS-CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEE
T ss_pred CHHH-hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceE
Confidence 1222 5799999999997542 2333456788888888888888775 444433
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=91.14 E-value=0.43 Score=47.25 Aligned_cols=35 Identities=11% Similarity=0.248 Sum_probs=25.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCC-CcCEEEEEe
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFP-RVKTIYVIV 131 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~-~v~~V~~l~ 131 (545)
+++|.|.||||++|..|++.||...+ ...++..+.
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s 39 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFS 39 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEe
Confidence 47899999999999999995554422 134565553
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.53 Score=47.81 Aligned_cols=99 Identities=12% Similarity=0.199 Sum_probs=59.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCc--CEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRV--KTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v--~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
.++|+|.| .|.+|+.+++.|.++. ++ ..|......+......+.+ ...+.. +++.. +
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~-dv~~~~I~vaD~~~~~~~~~~~~--------------g~~~~~~~Vdad----n 72 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKF-DIKPSQVTIIAAEGTKVDVAQQY--------------GVSFKLQQITPQ----N 72 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHB-CCCGGGEEEEESSCCSCCHHHHH--------------TCEEEECCCCTT----T
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCC-CCceeEEEEeccchhhhhHHhhc--------------CCceeEEeccch----h
Confidence 47799999 7999999999999973 33 3676665554433221111 111111 44322 2
Q ss_pred H-HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccc
Q psy16252 174 P-DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAF 234 (545)
Q Consensus 174 ~-~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~ 234 (545)
. +.+..++++.|+|||++-.. . ...++++|.++ + +.|++|+-
T Consensus 73 v~~~l~aLl~~~DvVIN~s~~~-~--------------~l~Im~aclea-G---v~YlDTa~ 115 (480)
T 2ph5_A 73 YLEVIGSTLEENDFLIDVSIGI-S--------------SLALIILCNQK-G---ALYINAAT 115 (480)
T ss_dssp HHHHTGGGCCTTCEEEECCSSS-C--------------HHHHHHHHHHH-T---CEEEESSC
T ss_pred HHHHHHHHhcCCCEEEECCccc-c--------------CHHHHHHHHHc-C---CCEEECCC
Confidence 2 23445666669999865332 1 13678899987 4 47788874
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.15 Score=53.38 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=26.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
+++++++|||| |.+|++++..|.+.|. +|++..|.
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~---~V~i~~R~ 396 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGA---KVVIANRT 396 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC----CEEEESS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEECC
Confidence 45789999999 7999999999999974 57777886
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.52 Score=44.43 Aligned_cols=58 Identities=24% Similarity=0.377 Sum_probs=44.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..|++++|.|++|.+|+.++..|++.|. .|....|..
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gA---tVtv~h~~t---------------------------------------- 194 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAGA---TVSVCHIKT---------------------------------------- 194 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTTC----------------------------------------
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCc----------------------------------------
Confidence 4689999999999999999999999854 455543321
Q ss_pred HHHHHHhcCccEEEEcccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
.++.+.++..|+||...+...
T Consensus 195 ~~L~~~~~~ADIVI~Avg~p~ 215 (285)
T 3p2o_A 195 KDLSLYTRQADLIIVAAGCVN 215 (285)
T ss_dssp SCHHHHHTTCSEEEECSSCTT
T ss_pred hhHHHHhhcCCEEEECCCCCC
Confidence 125566788999999887643
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=90.96 E-value=0.29 Score=48.48 Aligned_cols=77 Identities=6% Similarity=0.069 Sum_probs=49.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
.++++|+|+|+ |-+|..++..+...|. +|++..|+. ++++..... +. . .+... ..+.
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga---~V~v~dr~~------~r~~~~~~~-~~----~------~~~~~--~~~~ 221 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGA---QVQIFDINV------ERLSYLETL-FG----S------RVELL--YSNS 221 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH-HG----G------GSEEE--ECCH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCH------HHHHHHHHh-hC----c------eeEee--eCCH
Confidence 45689999999 9999999999998864 788888863 222221110 00 0 10000 0134
Q ss_pred HHHHHHhcCccEEEEccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~ 194 (545)
+++.+.+.++|+||++++..
T Consensus 222 ~~~~~~~~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 222 AEIETAVAEADLLIGAVLVP 241 (361)
T ss_dssp HHHHHHHHTCSEEEECCCCT
T ss_pred HHHHHHHcCCCEEEECCCcC
Confidence 56666777999999998753
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=90.90 E-value=0.068 Score=45.20 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=45.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
+++|+|.|+ |.+|+.++..|.+.| . +|++..|... +.+..... +. . +.. ..++
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g--~-~v~v~~r~~~------~~~~~a~~----~~---~----~~~------~~~~ 73 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQ--Y-KVTVAGRNID------HVRAFAEK----YE---Y----EYV------LIND 73 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTT--C-EEEEEESCHH------HHHHHHHH----HT---C----EEE------ECSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC--C-EEEEEcCCHH------HHHHHHHH----hC---C----ceE------eecC
Confidence 799999996 999999999998865 3 3777777632 22221111 00 0 111 1123
Q ss_pred HHHHhcCccEEEEccccc
Q psy16252 177 KRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~ 194 (545)
+.++++++|+||.+.+..
T Consensus 74 ~~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 74 IDSLIKNNDVIITATSSK 91 (144)
T ss_dssp HHHHHHTCSEEEECSCCS
T ss_pred HHHHhcCCCEEEEeCCCC
Confidence 566678899999987754
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=1.5 Score=41.59 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=31.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQR 142 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~r 142 (545)
+++++|+|.|+ |.+|+.++..|.+.| |.++.++.+..-..+...|
T Consensus 34 L~~~~VlVvGa-GGlGs~va~~La~aG--VG~i~lvD~D~Ve~sNL~R 78 (292)
T 3h8v_A 34 IRTFAVAIVGV-GGVGSVTAEMLTRCG--IGKLLLFDYDKVELANMNR 78 (292)
T ss_dssp GGGCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCBC-------
T ss_pred HhCCeEEEECc-CHHHHHHHHHHHHcC--CCEEEEECCCccChhhccc
Confidence 56789999996 789999999999995 6788888776543333333
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.80 E-value=0.43 Score=46.70 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=46.2
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
.+++|||+|| |.+|..++..+...|. +|+++.|++ ++++.... + ....+-|..+.++ .+
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga---~Vi~~~~~~------~~~~~~~~-----l---Ga~~~~d~~~~~~---~~ 222 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGL---NVVAVDIGD------EKLELAKE-----L---GADLVVNPLKEDA---AK 222 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC---EEEEECSCH------HHHHHHHH-----T---TCSEEECTTTSCH---HH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC---EEEEEeCCH------HHHHHHHH-----C---CCCEEecCCCccH---HH
Confidence 4789999999 6799999888777653 788887753 22221110 0 1110014443221 23
Q ss_pred HHHHHhcCccEEEEcccc
Q psy16252 176 DKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~ 193 (545)
.+.++..++|+||++++.
T Consensus 223 ~~~~~~~~~d~vid~~g~ 240 (339)
T 1rjw_A 223 FMKEKVGGVHAAVVTAVS 240 (339)
T ss_dssp HHHHHHSSEEEEEESSCC
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 344444689999999884
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=90.50 E-value=0.24 Score=47.30 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=28.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
+++++++||||+ .+|+.++..|++.| +|++..|.
T Consensus 126 l~~k~vlV~GaG-giG~aia~~L~~~G----~V~v~~r~ 159 (287)
T 1nvt_A 126 VKDKNIVIYGAG-GAARAVAFELAKDN----NIIIANRT 159 (287)
T ss_dssp CCSCEEEEECCS-HHHHHHHHHHTSSS----EEEEECSS
T ss_pred cCCCEEEEECch-HHHHHHHHHHHHCC----CEEEEECC
Confidence 357899999985 99999999999985 67777775
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=90.32 E-value=0.52 Score=45.34 Aligned_cols=111 Identities=10% Similarity=0.123 Sum_probs=60.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
++|.|.|| |.+|..++..|...|+ ...|.++.+++ ++++..... +.... .+..+.. +...+.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~-~~eV~L~D~~~------~~~~~~~~~----l~~~~-~~~~~~~-----i~~~~~ 62 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGS-CSELVLVDRDE------DRAQAEAED----IAHAA-PVSHGTR-----VWHGGH 62 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH------HHHHHHHHH----HTTSC-CTTSCCE-----EEEECG
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCH------HHHHHHHHh----hhhhh-hhcCCeE-----EEECCH
Confidence 47999998 9999999999988865 45788887753 222221110 10000 0000110 000122
Q ss_pred HHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEE
Q psy16252 178 RLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFT 228 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v 228 (545)
+.++++|+||-+++... ......+....|+...+.+++.+.+. .....+
T Consensus 63 -~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~v 112 (304)
T 2v6b_A 63 -SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVL 112 (304)
T ss_dssp -GGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEE
T ss_pred -HHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEE
Confidence 34679999999997643 22333455678888888888887775 334333
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=90.17 E-value=0.26 Score=46.82 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=28.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
..+|.|.||+|-+|+.+++.+.+. ++..-|-++.|+.
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~-~~~eLvg~vd~~~ 57 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRR-KDVELCAVLVRKG 57 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTC-SSEEEEEEBCCTT
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 468999999999999999998876 4554444556653
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=90.08 E-value=0.17 Score=49.86 Aligned_cols=35 Identities=26% Similarity=0.159 Sum_probs=29.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+++|+|+||+|.+|...+..+...|. +|++..|++
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga---~Vi~~~~~~ 199 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGF---RPIVTVRRD 199 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESCG
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 48999999999999999988877753 788888764
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=89.91 E-value=0.069 Score=48.69 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=43.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.++|.|.| +|.+|+.++..|.+.|+ +|++..|+.. +.+... + . |+...+
T Consensus 28 ~~~I~iiG-~G~~G~~la~~l~~~g~---~V~~~~r~~~------~~~~~~----------------~---~--g~~~~~ 76 (215)
T 2vns_A 28 APKVGILG-SGDFARSLATRLVGSGF---KVVVGSRNPK------RTARLF----------------P---S--AAQVTF 76 (215)
T ss_dssp -CCEEEEC-CSHHHHHHHHHHHHTTC---CEEEEESSHH------HHHHHS----------------B---T--TSEEEE
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHH----------------H---c--CCceec
Confidence 47899999 89999999999999876 4677777531 221110 0 0 111124
Q ss_pred HHHHhcCccEEEEcccc
Q psy16252 177 KRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~ 193 (545)
+.++++++|+||.+...
T Consensus 77 ~~~~~~~~DvVi~av~~ 93 (215)
T 2vns_A 77 QEEAVSSPEVIFVAVFR 93 (215)
T ss_dssp HHHHTTSCSEEEECSCG
T ss_pred HHHHHhCCCEEEECCCh
Confidence 56677899999988764
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=89.61 E-value=0.53 Score=46.57 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=29.8
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
++++|+|+|| |.+|..++..+...|. +|++..|++
T Consensus 180 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga---~Vi~~~~~~ 214 (366)
T 2cdc_A 180 NCRKVLVVGT-GPIGVLFTLLFRTYGL---EVWMANRRE 214 (366)
T ss_dssp TTCEEEEESC-HHHHHHHHHHHHHHTC---EEEEEESSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCc
Confidence 4899999999 9999999988877754 788888875
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=89.42 E-value=0.77 Score=44.06 Aligned_cols=102 Identities=10% Similarity=0.152 Sum_probs=61.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.++|.|.|| |.+|..++..|+..|. +..|.++.+..........+.. +.. . .+.- . .+
T Consensus 14 ~~kV~ViGa-G~vG~~~a~~l~~~g~-~~ev~L~Di~~~~~g~a~dl~~--------~~~--~----~i~~-----t-~d 71 (303)
T 2i6t_A 14 VNKITVVGG-GELGIACTLAISAKGI-ADRLVLLDLSEGTKGATMDLEI--------FNL--P----NVEI-----S-KD 71 (303)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECCC-----CHHHHHH--------HTC--T----TEEE-----E-SC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEcCCcchHHHHHHHhh--------hcC--C----CeEE-----e-CC
Confidence 478999996 9999999999998875 5578888776431100011110 000 0 1110 0 12
Q ss_pred HHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
+ +.++++|+||-+|+..........+...|+.-.+.+++.+.+.
T Consensus 72 ~-~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~ 115 (303)
T 2i6t_A 72 L-SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHY 115 (303)
T ss_dssp G-GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3468999999999874322233456677888888888887774
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.86 Score=42.93 Aligned_cols=58 Identities=24% Similarity=0.309 Sum_probs=43.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..|++++|.|++|.+|+.++..|+..|. .|....|..
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA---tVtv~hs~t---------------------------------------- 195 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAKA---TVTTCHRFT---------------------------------------- 195 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTTC----------------------------------------
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC---eEEEEeCCc----------------------------------------
Confidence 4689999999999999999999999854 455543321
Q ss_pred HHHHHHhcCccEEEEcccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
.++.+.++..|+||.+.+...
T Consensus 196 ~~L~~~~~~ADIVI~Avg~p~ 216 (285)
T 3l07_A 196 TDLKSHTTKADILIVAVGKPN 216 (285)
T ss_dssp SSHHHHHTTCSEEEECCCCTT
T ss_pred hhHHHhcccCCEEEECCCCCC
Confidence 125566788999999887543
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=89.24 E-value=0.55 Score=46.72 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=49.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..+++|+|+|+ |-+|..+++.+...|. +|++..|.. ++++..... + ...+..+.. +.
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga---~V~~~d~~~------~~l~~~~~~----~---g~~~~~~~~------~~ 222 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGA---TVTVLDINI------DKLRQLDAE----F---CGRIHTRYS------SA 222 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----T---TTSSEEEEC------CH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCH------HHHHHHHHh----c---CCeeEeccC------CH
Confidence 56899999998 9999999999988764 688887753 222211110 0 000000111 34
Q ss_pred HHHHHHhcCccEEEEccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~ 194 (545)
+++.+++.++|+||.+++..
T Consensus 223 ~~l~~~l~~aDvVi~~~~~p 242 (377)
T 2vhw_A 223 YELEGAVKRADLVIGAVLVP 242 (377)
T ss_dssp HHHHHHHHHCSEEEECCCCT
T ss_pred HHHHHHHcCCCEEEECCCcC
Confidence 56777788999999987643
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=89.02 E-value=0.72 Score=44.45 Aligned_cols=106 Identities=13% Similarity=0.056 Sum_probs=62.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
|+|.|.|| |.+|..++..|...+. ...|.++.|++.. .+.+...+.. ... .. ... .+.. ..+
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~-g~~V~l~D~~~~~---~~~~~~~l~~~~~~-~~-~~~----~i~~------t~d 63 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEGI---PQGKALDMYESGPV-GL-FDT----KVTG------SND 63 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSSH---HHHHHHHHHTTHHH-HT-CCC----EEEE------ESC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChhH---HHHHHHhHHhhhhc-cc-CCc----EEEE------CCC
Confidence 47999998 9999999999887532 3478888887431 2222111111 100 00 000 1110 012
Q ss_pred HHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
++. ++++|+||-+++.... ......+...|+.-...+++.+.+.
T Consensus 64 ~~~-l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~ 108 (310)
T 1guz_A 64 YAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH 108 (310)
T ss_dssp GGG-GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 333 6789999999986432 2223456688888888888887765
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=88.92 E-value=0.87 Score=42.88 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=28.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
..|++++|.|++|.+|+.++..|+..|. .|....
T Consensus 159 l~Gk~vvVvGrs~iVG~plA~lL~~~gA---tVtv~h 192 (286)
T 4a5o_A 159 LYGMDAVVVGASNIVGRPMALELLLGGC---TVTVTH 192 (286)
T ss_dssp CTTCEEEEECTTSTTHHHHHHHHHHTTC---EEEEEC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC---eEEEEe
Confidence 4689999999999999999999998854 455543
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=88.79 E-value=0.48 Score=39.96 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=30.3
Q ss_pred chhhhhc-CcEEEEeccc---cccchHHHHHHHhhCCCcCEEEEE
Q psy16252 90 SLDDFYE-GAEILMTGAT---GFLGKLLIEKLLRSFPRVKTIYVI 130 (545)
Q Consensus 90 ~~~~~~~-~~~VlITGat---GflG~~l~~~Ll~~g~~v~~V~~l 130 (545)
.+..+++ .++|.|.|++ |.+|..+++.|++.|+ +|+.+
T Consensus 14 ~l~~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~---~v~~V 55 (144)
T 2d59_A 14 DIREILTRYKKIALVGASPKPERDANIVMKYLLEHGY---DVYPV 55 (144)
T ss_dssp HHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEE
T ss_pred HHHHHHcCCCEEEEEccCCCCCchHHHHHHHHHHCCC---EEEEE
Confidence 3555664 7899999999 8899999999999876 46654
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=88.78 E-value=0.78 Score=38.31 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=28.5
Q ss_pred hhcCcEEEEeccc---cccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 94 FYEGAEILMTGAT---GFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 94 ~~~~~~VlITGat---GflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
+++.++|.|.|+| |-+|..+++.|++.|+ +|+.+.+.
T Consensus 11 l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~---~V~~vnp~ 50 (138)
T 1y81_A 11 SKEFRKIALVGASKNPAKYGNIILKDLLSKGF---EVLPVNPN 50 (138)
T ss_dssp ---CCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECTT
T ss_pred ccCCCeEEEEeecCCCCCHHHHHHHHHHHCCC---EEEEeCCC
Confidence 3567899999998 8899999999999876 47766554
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=88.53 E-value=0.94 Score=43.01 Aligned_cols=35 Identities=14% Similarity=0.342 Sum_probs=29.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEec
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R 132 (545)
..|++++|.|++|.+|+.++..|++.|. .|....|
T Consensus 163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA---tVtv~~~ 197 (300)
T 4a26_A 163 MAGKRAVVLGRSNIVGAPVAALLMKENA---TVTIVHS 197 (300)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeC
Confidence 4689999999999999999999999854 5665544
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=88.42 E-value=0.85 Score=42.71 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=29.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEec
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R 132 (545)
..|++++|.|++|.+|+.++..|++.|. .|....|
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA---tVtv~~~ 182 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNY---TVSVCHS 182 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCC---eEEEEeC
Confidence 6799999999999999999999999854 4555433
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=88.25 E-value=1.7 Score=42.69 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=33.3
Q ss_pred hhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 92 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 92 ~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
++.+++++|+|.|+ |.+|+.++..|.+.| |.++.++.+..
T Consensus 113 q~~L~~~~VlvvG~-GglGs~va~~La~aG--vg~i~lvD~D~ 152 (353)
T 3h5n_A 113 QDKLKNAKVVILGC-GGIGNHVSVILATSG--IGEIILIDNDQ 152 (353)
T ss_dssp HHHHHTCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEEECCB
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHhCC--CCeEEEECCCc
Confidence 45567899999997 779999999999995 67888887764
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=88.24 E-value=0.69 Score=45.25 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=27.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI 130 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l 130 (545)
.+.+|||+||+|.+|...+..+...|. +|++.
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga---~Vi~~ 181 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGA---RVFAT 181 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 479999999999999999888877754 67776
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=88.19 E-value=0.39 Score=44.12 Aligned_cols=70 Identities=10% Similarity=-0.007 Sum_probs=45.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.++|+|.|+ |.+|+.+++.|.+.| . |+++.|++. ++.. +. ....++. |.+ +++
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g---~-v~vid~~~~------~~~~--------~~-~~~~~i~gd~~------~~~ 62 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSE---V-FVLAEDENV------RKKV--------LR-SGANFVHGDPT------RVS 62 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSE---E-EEEESCGGG------HHHH--------HH-TTCEEEESCTT------CHH
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCC---e-EEEEECCHH------HHHH--------Hh-cCCeEEEcCCC------CHH
Confidence 478999997 999999999998874 2 566655432 1111 11 1222333 665 667
Q ss_pred HHHHH-hcCccEEEEccc
Q psy16252 176 DKRLV-TSKVNLVFHCAA 192 (545)
Q Consensus 176 ~~~~l-~~~vd~Vih~Aa 192 (545)
.+.++ ++++|.||-+.+
T Consensus 63 ~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 63 DLEKANVRGARAVIVDLE 80 (234)
T ss_dssp HHHHTTCTTCSEEEECCS
T ss_pred HHHhcCcchhcEEEEcCC
Confidence 77766 779999998754
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=0.93 Score=41.95 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=25.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
++|.|.|++|-+|+.+++.+.+. ++. ++.+.+..
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-~~~-elva~~d~ 34 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-DDL-TLSAELDA 34 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-TTC-EEEEEECT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCC-EEEEEEcc
Confidence 47999999999999999998765 232 55555443
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=1.3 Score=42.68 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=65.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.++|.|+|| |.+|..++..|+..+. +.+|+++.++. ++++.....+.+........ . .+. ...
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~-~~ev~l~Di~~------~~~~~~~~dl~~~~~~~~~~-~-~i~-------~~~ 68 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGI-ADEIVLIDANE------SKAIGDAMDFNHGKVFAPKP-V-DIW-------HGD 68 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH------HHHHHHHHHHHHHTTSSSSC-C-EEE-------ECC
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEeCCc------chHHHHHhhHHHHhhhcCCC-e-EEE-------cCc
Confidence 378999998 9999999999988753 45788887753 22222111111111000000 0 111 001
Q ss_pred HHHHhcCccEEEEccccccch-HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 177 KRLVTSKVNLVFHCAATLRFD-EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~-~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
.+.++++|+||-+++...-. .........|..-.+.+++.+.+. ....++.+
T Consensus 69 -~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv 121 (316)
T 1ldn_A 69 -YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLV 121 (316)
T ss_dssp -GGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEE
T ss_pred -HHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEE
Confidence 23468999999998875321 112334567777778888877775 33433333
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=87.95 E-value=1.7 Score=43.69 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=48.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+++|+|.|. |-+|+.+++.|.+.|. .|+++.+++ +++.. ++.....++. |.+ +++
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~---~vvvId~d~------~~v~~--------~~~~g~~vi~GDat------~~~ 59 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGV---KMVVLDHDP------DHIET--------LRKFGMKVFYGDAT------RMD 59 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC---CEEEEECCH------HHHHH--------HHHTTCCCEESCTT------CHH
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCC---CEEEEECCH------HHHHH--------HHhCCCeEEEcCCC------CHH
Confidence 467999996 9999999999999865 466776653 23322 1122333333 776 566
Q ss_pred HHHHH-hcCccEEEEccc
Q psy16252 176 DKRLV-TSKVNLVFHCAA 192 (545)
Q Consensus 176 ~~~~l-~~~vd~Vih~Aa 192 (545)
.+..+ ++++++||-+..
T Consensus 60 ~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 60 LLESAGAAKAEVLINAID 77 (413)
T ss_dssp HHHHTTTTTCSEEEECCS
T ss_pred HHHhcCCCccCEEEECCC
Confidence 67766 678899987654
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=87.86 E-value=0.47 Score=48.41 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=28.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
..|++|+|+||+|.+|...+..+...|. +|++.+++
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga---~vi~~~~~ 254 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGG---IPVAVVSS 254 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCC
Confidence 3579999999999999998877777653 67777764
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=87.78 E-value=0.63 Score=46.74 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=49.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..+++|+|.|+ |-+|..++..|...| ..+|++..|... +....... + .. +. .+.
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G--~~~V~v~~r~~~------ra~~la~~----~---g~----~~------~~~ 218 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRG--VRAVLVANRTYE------RAVELARD----L---GG----EA------VRF 218 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHC--CSEEEEECSSHH------HHHHHHHH----H---TC----EE------CCG
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCC--CCEEEEEeCCHH------HHHHHHHH----c---CC----ce------ecH
Confidence 46899999998 999999999999885 347888887632 22111110 0 00 11 122
Q ss_pred HHHHHHhcCccEEEEcccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
+++.+++.++|+||.+.+...
T Consensus 219 ~~l~~~l~~aDvVi~at~~~~ 239 (404)
T 1gpj_A 219 DELVDHLARSDVVVSATAAPH 239 (404)
T ss_dssp GGHHHHHHTCSEEEECCSSSS
T ss_pred HhHHHHhcCCCEEEEccCCCC
Confidence 356667789999999977543
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.61 E-value=0.56 Score=48.31 Aligned_cols=54 Identities=37% Similarity=0.637 Sum_probs=41.0
Q ss_pred cCCCeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecccCCCChHHHHHHhhh
Q psy16252 13 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLD 66 (545)
Q Consensus 13 ~~~~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~~~~~~~~~r~~~~~~ 66 (545)
..++.+|+|||||++|..|+..|++..+.-.+|+++.|........+++...+.
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~ 124 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFD 124 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHH
Confidence 357899999999999999999999975423689999997554444555555443
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=87.58 E-value=1 Score=44.57 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=47.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
.+.+|||+|+ |.+|...+..+...|. +|++..|++. ++...... + ....+-|.. +.+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga---~Vi~~~~~~~------~~~~~~~~----l---Ga~~v~~~~------~~~ 243 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGS---KVTVISTSPS------KKEEALKN----F---GADSFLVSR------DQE 243 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCGG------GHHHHHHT----S---CCSEEEETT------CHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHH------HHHHHHHh----c---CCceEEecc------CHH
Confidence 4789999996 9999999987777653 6888877642 11111100 0 010000322 334
Q ss_pred HHHHHhcCccEEEEccccc
Q psy16252 176 DKRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~ 194 (545)
.+.++..++|+||++++..
T Consensus 244 ~~~~~~~~~D~vid~~g~~ 262 (366)
T 1yqd_A 244 QMQAAAGTLDGIIDTVSAV 262 (366)
T ss_dssp HHHHTTTCEEEEEECCSSC
T ss_pred HHHHhhCCCCEEEECCCcH
Confidence 5666667899999999854
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=87.44 E-value=0.31 Score=47.83 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=29.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+.+|+|+||+|.+|...+..+...|. +|++..++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga---~Vi~~~~~ 184 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL---RVITTASR 184 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEECCS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC---EEEEEeCC
Confidence 589999999999999998887776653 78888775
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=87.20 E-value=1.9 Score=41.43 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=59.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
++|.|.| +|.+|..++..|.+.|. ...|++..|.. ++++.....+-+........ . .+. ..++
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~-~~~V~l~d~~~------~~~~~~~~~l~~~~~~~~~~-~-~~~-------~~d~ 64 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGV-ADDYVFIDANE------AKVKADQIDFQDAMANLEAH-G-NIV-------INDW 64 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTC-CSEEEEECSSH------HHHHHHHHHHHHHGGGSSSC-C-EEE-------ESCG
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-CCEEEEEcCCH------HHHHHHHHHHHhhhhhcCCC-e-EEE-------eCCH
Confidence 5799999 79999999999999863 34788887753 22222111100000000000 0 110 0123
Q ss_pred HHHhcCccEEEEcccccc-----chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 178 RLVTSKVNLVFHCAATLR-----FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
+.++++|+||-+++... .......+...|+.-...+++.+.+.
T Consensus 65 -~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~ 112 (309)
T 1hyh_A 65 -AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES 112 (309)
T ss_dssp -GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT
T ss_pred -HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999987643 22222234567777778888877764
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.19 E-value=0.79 Score=45.48 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=27.5
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEec
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R 132 (545)
.|.+|+|+||+|.+|...+..+...|. +|++..+
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga---~Vi~~~~ 216 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDA---HVTAVCS 216 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeC
Confidence 479999999999999998877776653 6777764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=86.72 E-value=0.31 Score=49.89 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=28.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
..|.+|+|+||+|-+|...+..+...|. +|++++++
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga---~vi~~~~~ 262 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGA---NPICVVSS 262 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC---eEEEEECC
Confidence 3478999999999999988877776653 67777764
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=2.6 Score=40.87 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=32.1
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
..++++|+|.|+ |.+|+.++..|.+.| |.++..+.+..
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aG--Vg~ItlvD~D~ 68 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWG--VRKITFVDNGT 68 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECCCB
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcC--CCEEEEecCCE
Confidence 467899999996 889999999999984 67888877754
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.49 E-value=0.76 Score=42.85 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=45.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCC-CCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLG-LSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lg-l~~ 174 (545)
++ +|+|.|+ |..|++++..|++.|. .+|++..|.. ++.+. +.+. ++ ...
T Consensus 108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~--~~I~v~nR~~------~ka~~-------------------la~~-~~~~~~ 157 (253)
T 3u62_A 108 KE-PVVVVGA-GGAARAVIYALLQMGV--KDIWVVNRTI------ERAKA-------------------LDFP-VKIFSL 157 (253)
T ss_dssp CS-SEEEECC-SHHHHHHHHHHHHTTC--CCEEEEESCH------HHHHT-------------------CCSS-CEEEEG
T ss_pred CC-eEEEECc-HHHHHHHHHHHHHcCC--CEEEEEeCCH------HHHHH-------------------HHHH-cccCCH
Confidence 56 8999997 8899999999999864 4788888863 22221 1110 00 123
Q ss_pred HHHHHHhcCccEEEEccc
Q psy16252 175 DDKRLVTSKVNLVFHCAA 192 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa 192 (545)
+++.++++++|+||++..
T Consensus 158 ~~~~~~~~~aDiVInatp 175 (253)
T 3u62_A 158 DQLDEVVKKAKSLFNTTS 175 (253)
T ss_dssp GGHHHHHHTCSEEEECSS
T ss_pred HHHHhhhcCCCEEEECCC
Confidence 456667788999999754
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.30 E-value=0.36 Score=46.83 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=28.2
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.|.+|+|+||+|.+|...+..+...|. +|++..++
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga---~vi~~~~~ 186 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGT---TVITTASK 186 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEECH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCC---EEEEEecc
Confidence 479999999999999999887777653 67777653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=86.13 E-value=0.85 Score=44.67 Aligned_cols=35 Identities=34% Similarity=0.331 Sum_probs=28.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+.+|||+|| |.+|...+..+...|. .+|++..|+
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga--~~Vi~~~~~ 201 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGA--YPVIVSEPS 201 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTC--CSEEEECSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEECCC
Confidence 4789999999 9999999887777653 268888775
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=86.02 E-value=0.47 Score=43.89 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=26.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEE-EecCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYV-IVRAK 134 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~-l~R~~ 134 (545)
.++|.|.|+ |.+|+.+++.+.+.+ + ++.+ +.|..
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~-~--eLva~~d~~~ 37 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKG-H--EIVGVIENTP 37 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-C--EEEEEECSSC
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCC-C--EEEEEEecCc
Confidence 378999999 999999999998874 3 4444 55543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=85.97 E-value=3.4 Score=39.81 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=62.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCcccCCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~Dl~~~~lgl~~~~ 176 (545)
|+|.|.|+ |.+|..++..|+..|+ ...|+++.|++ ++++.....+-+.... ... .+.. + +
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~-~~~V~l~D~~~------~~~~~~~~~l~~~~~~~~~~----~i~~---~-d--- 61 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDK------KRAEGDALDLIHGTPFTRRA----NIYA---G-D--- 61 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH------HHHHHHHHHHHHHGGGSCCC----EEEE---C-C---
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEeCCh------HHHHHHHHHHHhhhhhcCCc----EEEe---C-C---
Confidence 47899998 9999999999999876 45788887753 2222211110000000 000 1110 0 1
Q ss_pred HHHHhcCccEEEEccccccch-HHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 177 KRLVTSKVNLVFHCAATLRFD-EELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~-~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
. +.++++|+||-+++..... .....+...|+...+.+++.+.+.
T Consensus 62 ~-~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~ 106 (319)
T 1a5z_A 62 Y-ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY 106 (319)
T ss_dssp G-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 2357899999998865421 112345677888888888887764
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=85.84 E-value=0.83 Score=44.30 Aligned_cols=107 Identities=9% Similarity=0.063 Sum_probs=60.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.++|.|.|| |.+|..++..|...|. + .|.++.+++. ..+.....+........ ... .+.. ..+
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~-~-~v~L~Di~~~---~l~~~~~~l~~~~~~~~-~~~----~i~~------t~d 66 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNL-G-DVVLFDIVKN---MPHGKALDTSHTNVMAY-SNC----KVSG------SNT 66 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSSS---HHHHHHHHHHTHHHHHT-CCC----CEEE------ECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEeCCHH---HHHHHHHHHHhhhhhcC-CCc----EEEE------CCC
Confidence 368999998 9999999999988754 2 4777766532 12222111111100000 000 1110 012
Q ss_pred HHHHhcCccEEEEccccccc-hHH-----HHHHHHHhHHHHHHHHHHHHHc
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-DEE-----LKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-~~~-----~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
+ +.++++|+||-+++...- ... .......|+.-.+.+++.+.+.
T Consensus 67 ~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~ 116 (322)
T 1t2d_A 67 Y-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116 (322)
T ss_dssp G-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred H-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 457899999999976421 111 1234566777777787777664
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=85.29 E-value=0.68 Score=45.64 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=27.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
+.+|.|.||||++|..|++.|.++++....+..+.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~a 36 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA 36 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEE
Confidence 36899999999999999998887644444566554
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=85.24 E-value=6.1 Score=38.09 Aligned_cols=98 Identities=12% Similarity=0.158 Sum_probs=56.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEE-ecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCC--
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI-VRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLS-- 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~-- 173 (545)
..+|.|.|+ |.+|...++.|.+. +++ +|+++ .|+...... +. ..+|..
T Consensus 5 ~~rigiiG~-G~ig~~~~~~l~~~-~~~-~~~av~d~~~~~~~~-------------------------~a-~~~~~~~~ 55 (329)
T 3evn_A 5 KVRYGVVST-AKVAPRFIEGVRLA-GNG-EVVAVSSRTLESAQA-------------------------FA-NKYHLPKA 55 (329)
T ss_dssp CEEEEEEBC-CTTHHHHHHHHHHH-CSE-EEEEEECSCSSTTCC-----------------------------CCCCSCE
T ss_pred ceEEEEEec-hHHHHHHHHHHHhC-CCc-EEEEEEcCCHHHHHH-------------------------HH-HHcCCCcc
Confidence 478999997 89999999988876 333 44443 454332110 00 011111
Q ss_pred HHHHHHHhc--CccEEEEccccccchHHHHHH------------HHHhHHHHHHHHHHHHHccCC
Q psy16252 174 PDDKRLVTS--KVNLVFHCAATLRFDEELKEA------------IRTNMCATQTMLDLAKQCKNL 224 (545)
Q Consensus 174 ~~~~~~l~~--~vd~Vih~Aa~~~~~~~~~~~------------~~~Nv~gt~~ll~~a~~~~~~ 224 (545)
..+++++++ ++|+|+-+.......+....+ ...|+.....|+++|++. ++
T Consensus 56 ~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~-~~ 119 (329)
T 3evn_A 56 YDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESC-NL 119 (329)
T ss_dssp ESCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHT-TC
T ss_pred cCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHc-CC
Confidence 235677776 789998765543222211222 123677778888888886 54
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=85.14 E-value=3.4 Score=43.29 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=33.1
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
+..++.+|+|.|+ |.+|+.++..|.+.| |.++..+.+..-
T Consensus 322 ekL~~arVLIVGa-GGLGs~vA~~La~aG--VG~ItLvD~D~V 361 (615)
T 4gsl_A 322 DIIKNTKVLLLGA-GTLGCYVSRALIAWG--VRKITFVDNGTV 361 (615)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECCCBC
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCCC
Confidence 3567899999997 789999999999984 678888877653
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=84.31 E-value=0.49 Score=46.68 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=29.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
.+.+|||+|| |.+|...+..+...|. +|++..|++.
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga---~Vi~~~~~~~ 214 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGA---ETYVISRSSR 214 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEESSST
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence 4789999999 9999998887776653 6888888754
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=84.02 E-value=2.4 Score=40.16 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=44.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..|++|+|.|+++.+|+.++..|+..|. .|....+..
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~gA---tVtv~hs~t---------------------------------------- 199 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNNA---TVTTCHSKT---------------------------------------- 199 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTTC----------------------------------------
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCC---eEEEEECCc----------------------------------------
Confidence 4689999999999999999999998753 565543221
Q ss_pred HHHHHHhcCccEEEEcccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
.++.+.++++|+||-+.+..+
T Consensus 200 ~~L~~~~~~ADIVI~Avg~p~ 220 (301)
T 1a4i_A 200 AHLDEEVNKGDILVVATGQPE 220 (301)
T ss_dssp SSHHHHHTTCSEEEECCCCTT
T ss_pred ccHHHHhccCCEEEECCCCcc
Confidence 135667788999999887654
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=83.96 E-value=1.1 Score=43.56 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=59.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
++|.|.|| |.+|..++..|...|+ + .|.+..++.. ..+.....+........ ... .+.. ..++
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~-~-~V~L~Di~~~---~l~~~~~~l~~~~~~~~-~~~----~i~~------t~d~ 77 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDL-G-DVYMFDIIEG---VPQGKALDLNHCMALIG-SPA----KIFG------ENNY 77 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSTT---HHHHHHHHHHHHHHHHT-CCC----CEEE------ESCG
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEECCHH---HHHHHHHHHHhHhhccC-CCC----EEEE------CCCH
Confidence 68999998 9999999988888765 2 4888877642 12221111111110000 000 1110 0123
Q ss_pred HHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 178 RLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
+.++++|+||-+++... ...........|+.-.+.+++.+.+.
T Consensus 78 -~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~ 121 (328)
T 2hjr_A 78 -EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY 121 (328)
T ss_dssp -GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHH
T ss_pred -HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHH
Confidence 45689999999987543 11111234466777777787777664
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=83.90 E-value=0.88 Score=44.38 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=27.4
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
.++|.|.||||.+|+.+++.|+++++...+|+++.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~ 37 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLA 37 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 47899999999999999999988642223566665
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=83.76 E-value=1.5 Score=42.36 Aligned_cols=67 Identities=10% Similarity=0.173 Sum_probs=47.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..|++|.|.| .|-+|+.+++.|...|. +|++..|...... .+.. +...
T Consensus 138 l~g~tvGIIG-lG~IG~~vA~~l~~~G~---~V~~~dr~~~~~~-------------------------~~~~---~~~~ 185 (324)
T 3hg7_A 138 LKGRTLLILG-TGSIGQHIAHTGKHFGM---KVLGVSRSGRERA-------------------------GFDQ---VYQL 185 (324)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSCCCCT-------------------------TCSE---EECG
T ss_pred cccceEEEEE-ECHHHHHHHHHHHhCCC---EEEEEcCChHHhh-------------------------hhhc---cccc
Confidence 5689999999 69999999999988765 6888877653221 0000 0123
Q ss_pred HHHHHHhcCccEEEEcccc
Q psy16252 175 DDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~ 193 (545)
.+++++++++|+|+-+...
T Consensus 186 ~~l~ell~~aDvV~l~lPl 204 (324)
T 3hg7_A 186 PALNKMLAQADVIVSVLPA 204 (324)
T ss_dssp GGHHHHHHTCSEEEECCCC
T ss_pred CCHHHHHhhCCEEEEeCCC
Confidence 4678888899988876654
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=83.70 E-value=1.8 Score=41.30 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=28.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.++|.|.||+|.+|..++..|.+.|+ .|++..|+
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~---~V~~~~~~ 54 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGY---PISILDRE 54 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTC---CEEEECTT
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCC---eEEEEECC
Confidence 36899999999999999999999876 46666554
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=83.62 E-value=2.1 Score=40.39 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=28.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
..|++|+|.|+++-+|+.++..|+..|. .|....
T Consensus 157 l~gk~vvVIG~s~iVG~p~A~lL~~~gA---tVtv~h 190 (288)
T 1b0a_A 157 TFGLNAVVIGASNIVGRPMSMELLLAGC---TTTVTH 190 (288)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTC---EEEEEC
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHCCC---eEEEEe
Confidence 4689999999999999999999998753 566553
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=83.54 E-value=1.7 Score=41.71 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=62.2
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH-HHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT-VAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
+|.|+|| |.+|..++..|+..+. .+|.++.+.... .+....-+.. .+. .. ... .+.. ..++
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l--~el~L~Di~~~~---~~g~~~dl~~~~~~-~~-~~~----~i~~------t~d~ 62 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGY--DDLLLIARTPGK---PQGEALDLAHAAAE-LG-VDI----RISG------SNSY 62 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTC--SCEEEECSSTTH---HHHHHHHHHHHHHH-HT-CCC----CEEE------ESCG
T ss_pred CEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCChhh---HHHHHHHHHHhhhh-cC-CCe----EEEE------CCCH
Confidence 4789998 9999999999888754 468888776321 1111111111 100 00 000 1110 0123
Q ss_pred HHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 178 RLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
+.++++|+||-+|+... ...........|+.-.+.+++.+.+.
T Consensus 63 -~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~ 106 (308)
T 2d4a_B 63 -EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY 106 (308)
T ss_dssp -GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999988753 22233456788888888998888774
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=83.39 E-value=0.75 Score=45.28 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=28.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
++|.|.||||.+|+.+++.|.++ +++ +|.++.|+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-p~~-ev~~i~~s 42 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-PMF-ELTALAAS 42 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-SSE-EEEEEEEC
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-CCC-EEEEEEcc
Confidence 68999999999999999998876 433 67777764
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=83.21 E-value=2.8 Score=41.13 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=46.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
.|.+|+|+|+ |-+|...+..+...|. +|++..+++.. .+.+.+.+ ..+.+-|.. +.+
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga---~Vi~~~~~~~~---~~~~~~~l----------Ga~~vi~~~------~~~ 236 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGH---HVTVISSSNKK---REEALQDL----------GADDYVIGS------DQA 236 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEESSTTH---HHHHHTTS----------CCSCEEETT------CHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEeCChHH---HHHHHHHc----------CCceeeccc------cHH
Confidence 4789999996 8899999877776653 68888876431 11111000 010000222 234
Q ss_pred HHHHHhcCccEEEEccccc
Q psy16252 176 DKRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~ 194 (545)
.+.++..++|+||.+++..
T Consensus 237 ~~~~~~~g~D~vid~~g~~ 255 (357)
T 2cf5_A 237 KMSELADSLDYVIDTVPVH 255 (357)
T ss_dssp HHHHSTTTEEEEEECCCSC
T ss_pred HHHHhcCCCCEEEECCCCh
Confidence 5556666899999999853
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.16 E-value=0.59 Score=45.37 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=28.7
Q ss_pred Cc-EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 97 GA-EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 97 ~~-~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
+. +|||+||+|.+|...+..+...|. +|++..+++.
T Consensus 149 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga---~vi~~~~~~~ 185 (328)
T 1xa0_A 149 ERGPVLVTGATGGVGSLAVSMLAKRGY---TVEASTGKAA 185 (328)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCTT
T ss_pred CCceEEEecCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 44 799999999999999887777653 5888888643
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=82.90 E-value=2.5 Score=39.64 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=45.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..|++++|.|+++.+|+.++..|++.|. ...|+...|..
T Consensus 156 l~gk~vvVvG~s~iVG~p~A~lL~~~g~-~atVtv~h~~t---------------------------------------- 194 (281)
T 2c2x_A 156 IAGAHVVVIGRGVTVGRPLGLLLTRRSE-NATVTLCHTGT---------------------------------------- 194 (281)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHTSTTT-CCEEEEECTTC----------------------------------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHhcCCC-CCEEEEEECch----------------------------------------
Confidence 5689999999999999999999988721 24666554332
Q ss_pred HHHHHHhcCccEEEEccccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF 196 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~ 196 (545)
.++.+.++++|+||-+.+..++
T Consensus 195 ~~L~~~~~~ADIVI~Avg~p~~ 216 (281)
T 2c2x_A 195 RDLPALTRQADIVVAAVGVAHL 216 (281)
T ss_dssp SCHHHHHTTCSEEEECSCCTTC
T ss_pred hHHHHHHhhCCEEEECCCCCcc
Confidence 1356677889999998886543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.67 E-value=0.71 Score=45.73 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=27.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.|.+|||+|+ |-+|...+..+...|. +|+++.+++
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga---~Vi~~~~~~ 228 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGA---HVVAFTTSE 228 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 4789999998 7799998876666653 588888764
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=82.45 E-value=1.1 Score=43.80 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=26.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
+.+|.|.||||++|..|++.|.++.+...++..+.
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~ 35 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFA 35 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEE
Confidence 46899999999999999997777533344566654
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.16 E-value=0.65 Score=45.23 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=27.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEE
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI 130 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l 130 (545)
++|.|-||||.+|+.|++.|.++++.+..++.+
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~ 33 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLY 33 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEe
Confidence 468999999999999999998766666666554
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=81.44 E-value=2.1 Score=42.28 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=26.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
.|.+|+|+||+|.+|...+..+...|. +|++.+
T Consensus 164 ~g~~VlV~Ga~G~vG~~a~qla~~~Ga---~Vi~~~ 196 (371)
T 3gqv_A 164 KPVYVLVYGGSTATATVTMQMLRLSGY---IPIATC 196 (371)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCC---EEEEEe
Confidence 478999999999999998877776654 677765
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=81.37 E-value=1.6 Score=45.71 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=31.3
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
+..++++|+|.|+ |.+|+.++..|.+.| |.+|..+...
T Consensus 323 ~kL~~~kVLIVGa-GGLGs~va~~La~aG--VG~ItLvD~D 360 (598)
T 3vh1_A 323 DIIKNTKVLLLGA-GTLGCYVSRALIAWG--VRKITFVDNG 360 (598)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHTTT--CCEEEEECCS
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEECCC
Confidence 4466799999996 779999999999984 6788887554
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=81.29 E-value=4 Score=41.44 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=28.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
|+|.|.|+ |++|..++..|.+.|+ .|++..|++
T Consensus 3 mkI~VIG~-G~vG~~lA~~La~~G~---~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGI-GYVGLVSATCFAELGA---NVRCIDTDR 35 (450)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCC---EEEEEECCH
Confidence 68999985 9999999999999876 688888763
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=80.68 E-value=0.66 Score=44.50 Aligned_cols=71 Identities=10% Similarity=0.208 Sum_probs=47.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..+++|+|.|+ |-+|+.+++.|...|. +|++..|... +...... . .. +.. +.
T Consensus 155 l~g~~v~IiG~-G~iG~~~a~~l~~~G~---~V~~~d~~~~------~~~~~~~-----~---g~----~~~------~~ 206 (300)
T 2rir_A 155 IHGSQVAVLGL-GRTGMTIARTFAALGA---NVKVGARSSA------HLARITE-----M---GL----VPF------HT 206 (300)
T ss_dssp STTSEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSHH------HHHHHHH-----T---TC----EEE------EG
T ss_pred CCCCEEEEEcc-cHHHHHHHHHHHHCCC---EEEEEECCHH------HHHHHHH-----C---CC----eEE------ch
Confidence 45899999996 9999999999998764 6888877631 1111000 0 00 000 12
Q ss_pred HHHHHHhcCccEEEEcccc
Q psy16252 175 DDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~ 193 (545)
+++.++++++|+||.+...
T Consensus 207 ~~l~~~l~~aDvVi~~~p~ 225 (300)
T 2rir_A 207 DELKEHVKDIDICINTIPS 225 (300)
T ss_dssp GGHHHHSTTCSEEEECCSS
T ss_pred hhHHHHhhCCCEEEECCCh
Confidence 4577888899999998765
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=80.60 E-value=1.8 Score=41.71 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=46.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
..|++|.|.| .|-+|+.+++.|...|. +|++..|...... .+.. . ...
T Consensus 137 l~g~tvGIiG-~G~IG~~vA~~l~~~G~---~V~~~dr~~~~~~-------------------------~~~~-~--~~~ 184 (315)
T 3pp8_A 137 REEFSVGIMG-AGVLGAKVAESLQAWGF---PLRCWSRSRKSWP-------------------------GVES-Y--VGR 184 (315)
T ss_dssp STTCCEEEEC-CSHHHHHHHHHHHTTTC---CEEEEESSCCCCT-------------------------TCEE-E--ESH
T ss_pred cCCCEEEEEe-eCHHHHHHHHHHHHCCC---EEEEEcCCchhhh-------------------------hhhh-h--ccc
Confidence 5689999999 59999999999988765 5777777654321 1100 0 023
Q ss_pred HHHHHHhcCccEEEEcccc
Q psy16252 175 DDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~ 193 (545)
.+++++++++|+|+-+...
T Consensus 185 ~~l~ell~~aDiV~l~~Pl 203 (315)
T 3pp8_A 185 EELRAFLNQTRVLINLLPN 203 (315)
T ss_dssp HHHHHHHHTCSEEEECCCC
T ss_pred CCHHHHHhhCCEEEEecCC
Confidence 5678888889988776553
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=80.52 E-value=12 Score=35.68 Aligned_cols=31 Identities=10% Similarity=0.255 Sum_probs=24.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
.+|.|.|+.|++|...+..|.+. ++ +++++.
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~--~~-~lvav~ 34 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEV--GG-VLVASL 34 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHT--TC-EEEEEE
T ss_pred eEEEEECCChHHHHHHHHHHHhC--CC-EEEEEE
Confidence 68999999999999999999886 33 455544
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=80.43 E-value=3 Score=40.06 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=49.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCC-C--
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDL-G-- 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~l-g-- 171 (545)
..+++|+|.|++..+|+.++..|+..|. .|+...|+..... . +.. .+..... +
T Consensus 175 l~gk~vvVIG~G~iVG~~~A~~L~~~gA---tVtv~nR~~~~l~-------------~-----ra~---~la~~~~~~t~ 230 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRPLAALLANDGA---TVYSVDVNNIQKF-------------T-----RGE---SLKLNKHHVED 230 (320)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTSC---EEEEECSSEEEEE-------------E-----SCC---CSSCCCCEEEE
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHCCC---EEEEEeCchHHHH-------------h-----HHH---HHhhhcccccc
Confidence 5689999999999999999999998753 5776655411000 0 000 1111000 0
Q ss_pred ---CCHHHHHHHhcCccEEEEcccccc
Q psy16252 172 ---LSPDDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 172 ---l~~~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
.+.+++.+.++++|+||-+.+...
T Consensus 231 ~~~t~~~~L~e~l~~ADIVIsAtg~p~ 257 (320)
T 1edz_A 231 LGEYSEDLLKKCSLDSDVVITGVPSEN 257 (320)
T ss_dssp EEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred cccccHhHHHHHhccCCEEEECCCCCc
Confidence 133678888899999999887643
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=80.42 E-value=1.5 Score=42.44 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=31.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
..|++|.|.| .|-+|+.+++.|...|. +|++..|...
T Consensus 135 l~gktvGIiG-lG~IG~~vA~~l~~~G~---~V~~~dr~~~ 171 (324)
T 3evt_A 135 LTGQQLLIYG-TGQIGQSLAAKASALGM---HVIGVNTTGH 171 (324)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred ccCCeEEEEC-cCHHHHHHHHHHHhCCC---EEEEECCCcc
Confidence 5689999998 69999999999998865 6888888754
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=80.32 E-value=3.4 Score=35.15 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=18.0
Q ss_pred ccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 106 TGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 106 tGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+|.++...++.|.+.|. +|++..|+.
T Consensus 25 s~~p~~a~a~~La~~Ga---~vvi~~r~~ 50 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQAGV---DVVINLMPD 50 (157)
T ss_dssp EBCCCHHHHHHHHHTTC---CEEEECSCT
T ss_pred cCCCCHHHHHHHHHcCC---CEEEECCCc
Confidence 35789999999999865 344444543
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=80.26 E-value=2.4 Score=40.87 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=59.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.++|.|.|| |.+|..++..|++.|+ ..|++..|++. ..+.....+........ ... .+.. ..+
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~--~~V~l~D~~~~---~~~~~~~~l~~~~~~~~-~~~----~i~~------t~d 66 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNL--ADVVLFDIAEG---IPQGKALDITHSMVMFG-STS----KVIG------TDD 66 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSSS---HHHHHHHHHHHHHHHHT-CCC----CEEE------ESC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--ceEEEEeCCch---HHHHHHHHHHhhhhhcC-CCc----EEEE------CCC
Confidence 478999998 9999999999999864 25887777642 12221100111000000 000 1110 012
Q ss_pred HHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
+ +.++++|+||-+++...- .....+....|....+.+++...+.
T Consensus 67 ~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~ 111 (317)
T 2ewd_A 67 Y-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY 111 (317)
T ss_dssp G-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred H-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHH
Confidence 3 356799999999975431 1111233455666667777766654
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=80.20 E-value=3.7 Score=38.93 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFP 122 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~ 122 (545)
.++|+|.|+||-.|+.+++.+++.|+
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~ 32 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGT 32 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCC
Confidence 57899999999999999999998764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=80.04 E-value=3.2 Score=40.55 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=26.5
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+.+|||+|+ |.+|...+..+...|. +|++..++
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga---~Vi~~~~~ 201 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGA---FVVCTARS 201 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC---EEEEEcCC
Confidence 4789999997 8999988877666653 57777765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 545 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-11 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 5e-11 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 6e-08 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 6e-08 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 2e-06 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 0.004 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 1e-05 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-05 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 2e-05 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 4e-05 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-04 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 3e-04 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 3e-04 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 4e-04 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 6e-04 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 7e-04 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 7e-04 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 7e-04 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 7e-04 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 7e-04 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 0.001 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 0.002 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 0.002 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 0.002 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 0.003 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 0.003 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 0.003 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 0.004 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 63.2 bits (153), Expect = 2e-11
Identities = 41/281 (14%), Positives = 85/281 (30%), Gaps = 41/281 (14%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
IL+TG GF+G ++ ++++ V + + + + ++ + +
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDT---VVNIDKLTYAGNLESLSDISESNRYNFEHADI 59
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELK---EAIRTNMCATQTMLD 216
+ + + V H AA D + I TN+ T +L+
Sbjct: 60 CDSAEI----------TRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLE 109
Query: 217 LAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERL 276
+A++ + +KN + + L + E
Sbjct: 110 VARKYWSAL----------GEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT 159
Query: 277 SHENMNTYTLTKAAAEQLLCE--EAQFFPVCIFRPSIVISTWKEP---IPGWIDNLYGPT 331
++ + Y+ +KA+++ L+ P + S + P IP I N
Sbjct: 160 AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILN----- 214
Query: 332 GLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNG 372
A G D D + + AL G
Sbjct: 215 -----ALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEG 250
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.6 bits (149), Expect = 5e-11
Identities = 48/324 (14%), Positives = 89/324 (27%), Gaps = 77/324 (23%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
IL+TG GF+G L +KL+ V V ++ ++ + L
Sbjct: 4 ILITGGAGFVGSHLTDKLMM-----DGHEVTVVDNFFTGRKRNVEHWIGHENFEL----- 53
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAA---TLRFDEELKEAIRTNMCATQTMLD 216
++ D + +V+ ++H A+ + + ++TN T ML
Sbjct: 54 ------------INHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLG 101
Query: 217 LAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERL 276
LAK+ ST+ E+ H ++ P+
Sbjct: 102 LAKRVG--ARLLLASTS----------EVYGDPEVHPQSEDYWGHVNPIGPR-------- 141
Query: 277 SHENMNTYTLTKAAAEQLLCEEAQF--FPVCIFRPSIVISTWKEP-----IPGWIDNLYG 329
Y K AE + + V + R + +I
Sbjct: 142 -----ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQ--- 193
Query: 330 PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389
A G T +VN L+ + N
Sbjct: 194 -------ALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSS---------PVNLG 237
Query: 390 NSKDNPLTWGEF-ITKSLKEGVKI 412
N +++ + I + G +I
Sbjct: 238 NPEEHTILEFAQLIKNLVGSGSEI 261
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 52.5 bits (125), Expect = 6e-08
Identities = 32/223 (14%), Positives = 60/223 (26%), Gaps = 46/223 (20%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
L+TG TG G L E LL V + I R + + ++ D + KF
Sbjct: 4 ALITGVTGQDGSYLAEFLLEKGYEV---HGIKRRASSFNTERVDHIYQDPHTCNPKFHLH 60
Query: 160 ----TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTML 215
+ + + PD +V + + E + + T +L
Sbjct: 61 YGDLSDTSNLTRILREVQPD-------EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLL 113
Query: 216 DLAKQ--CKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETR 273
+ + + F ST+ +Y + +
Sbjct: 114 EAIRFLGLEKKTRFYQASTSE-----------LY-----------------GLVQEIPQK 145
Query: 274 ERLSHENMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVIS 314
E + Y + K A + + + C S
Sbjct: 146 ETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHES 188
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 52.1 bits (124), Expect = 6e-08
Identities = 38/319 (11%), Positives = 80/319 (25%), Gaps = 54/319 (16%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TG GF+G + +LL ++ R + L+F
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
+++ D + + R TN+ TQT+L A
Sbjct: 63 DIRDAGLLARELRGVDA-------IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAV 115
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
+ +++ + + P E
Sbjct: 116 DAGVGR-------------------VVHVSTNQVYGSIDSGSWTESSP----------LE 146
Query: 280 NMNTYTLTKAAAEQLL--CEEAQFFPVCIFRPSIVISTWKEP---IPGWIDNLYGPTGLV 334
+ Y +KA ++ + V I R ++ P IP ++ N
Sbjct: 147 PNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTN-------- 198
Query: 335 TGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDN 394
G D + V D + G + + + +++
Sbjct: 199 --LLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRA---GEIYHIGGGLELTNREL 253
Query: 395 PLTWGEFITKSLKEGVKIP 413
+ + K+
Sbjct: 254 TGILLDSLGADWSSVRKVA 272
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 47.9 bits (112), Expect = 2e-06
Identities = 51/307 (16%), Positives = 91/307 (29%), Gaps = 33/307 (10%)
Query: 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK 155
EG+ +L+TGA GF+ ++E+LL +V+ R+ L +
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVR---GTARSASK----------LANLQKRWD 56
Query: 156 FTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTML 215
E+A D+ L V V H A+ + F + E + + T L
Sbjct: 57 AKYPGRFETAVVEDM-LKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNAL 115
Query: 216 DLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRER 275
A ++K F S+ S K E IY ++ K + E
Sbjct: 116 RAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWN--------LESIDKAKTLPES 167
Query: 276 LSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVT 335
+++ Y +K AE + +++ + I +G +
Sbjct: 168 DPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMM 227
Query: 336 GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNP 395
G V L + + D+ H P Y +
Sbjct: 228 SLFNGEVSPALALMPPQYYVSAVDIG---------LLHLGCLVLPQIERRRVYGTA--GT 276
Query: 396 LTWGEFI 402
W +
Sbjct: 277 FDWNTVL 283
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 37.1 bits (84), Expect = 0.004
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 14 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTI 45
EG+ +L+TGA GF+ ++E+LL +V+
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGT 41
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 1e-05
Identities = 33/226 (14%), Positives = 60/226 (26%), Gaps = 41/226 (18%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
L+TG TG G L E LL V + IVR + + RI+ + ++
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGYEV---HGIVRRSSSFNT-GRIEHLYKNPQAHIEGNMK 59
Query: 160 TSKESAQAPDLGLSPDDKRLVTSK----VNLVFHCAATLRFDEELKEAIRTNMCATQTML 215
DL S +++ + + + + + + T +L
Sbjct: 60 LHYG-----DLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLL 114
Query: 216 DLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRER 275
D K C + + + S Y + +E
Sbjct: 115 DAVKTCGLINSVKFYQASTSELY--------------------------GKVQEIPQKET 148
Query: 276 LSHENMNTYTLTKAAAEQLLCE--EAQFFPVCIFRPSIVISTWKEP 319
+ Y K A ++ EA S +
Sbjct: 149 TPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGA 194
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 44.6 bits (104), Expect = 2e-05
Identities = 41/277 (14%), Positives = 82/277 (29%), Gaps = 45/277 (16%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
I++TG GF+G + + + P V ++ + ++ +L +
Sbjct: 5 IIVTGGAGFIGSNFVHYVYNNHPDVHVT--VLDKLTYAGNKANLEAILGDRVELVVG--- 59
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELK---EAIRTNMCATQTMLD 216
D+ + + +K + + H AA D L I TN T T+L+
Sbjct: 60 ---------DI-ADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLE 109
Query: 217 LAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERL 276
K F +VST E++ + + + P
Sbjct: 110 --AARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSP--------- 158
Query: 277 SHENMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLV 334
Y+ TKAA++ ++ + F I S ++ +
Sbjct: 159 -------YSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQ-------I 204
Query: 335 TGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371
T AG+ + D + + +
Sbjct: 205 TNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTK 241
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 44.5 bits (104), Expect = 2e-05
Identities = 26/228 (11%), Positives = 66/228 (28%), Gaps = 64/228 (28%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+ + G G +G + +L + +++R + ++ +LD+ A+
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQRGDVE----LVLRTRDE------LN-LLDSRAV------- 46
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATL----RFDEELKEAIRTNMCATQTML 215
+ +++ V+ AA + + + I NM ++
Sbjct: 47 ----------------HDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNII 90
Query: 216 DLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRER 275
A Q ++ ++ + S Y K ++ + ++ L +
Sbjct: 91 HAAHQN-DVNKLLFLGS--SCIYPKLAKQPMAESELLQGTLEPTN--------------- 132
Query: 276 LSHENMNTYTLTKAAAEQLL--CEEAQFFPVCIFRPSIVISTWKEPIP 321
Y + K A +L P+ + P
Sbjct: 133 ------EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHP 174
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.5 bits (101), Expect = 4e-05
Identities = 29/227 (12%), Positives = 61/227 (26%), Gaps = 39/227 (17%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TG G++G + +L+ + + + + + + +
Sbjct: 4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 63
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
E K++ V H A E + +R + L +
Sbjct: 64 KGLEKVFK-------------EYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLE 110
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
+ + +V ++ + Y P E
Sbjct: 111 LMQQYNVSKFVFSSSATVYGDATR----------------------FPNMIPIPEECPLG 148
Query: 280 NMNTYTLTKAAAEQLLCE----EAQFFPVCIFRPSIVISTWKEPIPG 322
N Y TK A E +L + + + + I R I + G
Sbjct: 149 PTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIG 195
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 17/154 (11%), Positives = 47/154 (30%), Gaps = 13/154 (8%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TG +G++G +LL++ V + + +K++ P +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
++ V H A E +++ + L L
Sbjct: 63 ALMTEILH-------------DHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS 109
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHY 253
+ + ++ ++ + Y + ++
Sbjct: 110 AMRAANVKNFIFSSSATVYGDQPKIPYVESFPTG 143
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKM 64
+L+ GATG G+ L++++L K + R + P+
Sbjct: 5 VLLAGATGLTGEHLLDRILSEPTLAK-VIAPARKALAEHPRLDNPVG 50
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKM 146
+L+ GATG G+ L++++L K + R + P+
Sbjct: 5 VLLAGATGLTGEHLLDRILSEPTLAK-VIAPARKALAEHPRLDNPVG 50
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 40.3 bits (93), Expect = 4e-04
Identities = 34/231 (14%), Positives = 58/231 (25%), Gaps = 42/231 (18%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
I +TGA GF+ + +L + K + V + + C
Sbjct: 18 ISITGAGGFIASHIARRLKH---EGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCL 74
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
E V NL + N + M++ A+
Sbjct: 75 KVTEG---------------VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR 119
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
+K F Y S+A K +E + + E
Sbjct: 120 IN-GIKRFFYASSACIYPEFKQLE---------------------TTNVSLKESDAWPAE 157
Query: 280 NMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGWIDNLY 328
+ + L K A E+L + F I R + + G
Sbjct: 158 PQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPA 208
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 39.7 bits (91), Expect = 6e-04
Identities = 31/224 (13%), Positives = 58/224 (25%), Gaps = 13/224 (5%)
Query: 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT 157
A++L+TG GFLG L L + ++ + + +
Sbjct: 1 AKLLITGGCGFLGSNLASFALSQGIDL----IVFDNLSRKGATDNLHWLSSLGNFEFVHG 56
Query: 158 CSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDL 217
+K PD + A + N+ T +L+
Sbjct: 57 DIRNKNDVTRLITKYMPD-------SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEA 109
Query: 218 AKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLS 277
+Q + Y S + Y + + T Y+ + K + D + S
Sbjct: 110 VRQYNSNCNIIYSS--TNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCS 167
Query: 278 HENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIP 321
+ Y L A L + + R
Sbjct: 168 KGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWF 211
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 7e-04
Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLD 66
+ + GA+G G++L++++L + +I R K + + +
Sbjct: 17 VFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEAYKNVNQE 64
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 7e-04
Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLD 148
+ + GA+G G++L++++L + +I R K + + +
Sbjct: 17 VFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEAYKNVNQE 64
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 39.4 bits (90), Expect = 7e-04
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS 56
+L+TGA+G G+++ +KL + +VR+ + +
Sbjct: 6 VLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKE 43
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 39.4 bits (90), Expect = 7e-04
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS 138
+L+TGA+G G+++ +KL + +VR+ + +
Sbjct: 6 VLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKE 43
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.6 bits (91), Expect = 7e-04
Identities = 39/237 (16%), Positives = 70/237 (29%), Gaps = 46/237 (19%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
L+TG GF+G L+E LL+ +V + + + R + + + KF
Sbjct: 19 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVR-SLVSEKQWSNFKFIQG 77
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
+ + D V + R + + TN+ ML A+
Sbjct: 78 DIRNLDDCNNACAGVDY-------VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAAR 130
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
K + FTY +++ + D E +
Sbjct: 131 DAKV-QSFTYAASSST----------------------------YGDHPGLPKVEDTIGK 161
Query: 280 NMNTYTLTKAAAEQLL--CEEAQFFPVCIFRPSIVISTWKEP-------IPGWIDNL 327
++ Y +TK E F R V ++P IP W ++
Sbjct: 162 PLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSM 218
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.001
Identities = 18/162 (11%), Positives = 41/162 (25%), Gaps = 27/162 (16%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
I + GATG G + + +++ V V+VR +
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVT---VLVRDSSRLPSEGPRPAH------------- 49
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
L D + + V T + ++ A
Sbjct: 50 ------VVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIVA-AM 98
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISK 261
+ + ++AF + + + + K+ +
Sbjct: 99 KAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLR 140
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.1 bits (87), Expect = 0.002
Identities = 39/321 (12%), Positives = 80/321 (24%), Gaps = 48/321 (14%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
L+TG TG G L + LL RV + +V +++ + R+ ++ I +
Sbjct: 3 ALVTGITGQDGAYLAKLLLEKGYRV---HGLVA-RRSSDTRWRLRELGIEGDIQYEDGDM 58
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
S + + +V + + + + +L+ +
Sbjct: 59 ADACS-------VQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIR 111
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
Q F ST+ + + E
Sbjct: 112 QFSPETRFYQASTSEMFGL----------------------------IQAERQDENTPFY 143
Query: 280 NMNTYTLTKAAAEQLLCE--EAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGA 337
+ Y + K + E+ S + + +
Sbjct: 144 PRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGI-EFVTRKV--TDAVARIK 200
Query: 338 QAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLT 397
L + D K D A V A+ D + +D
Sbjct: 201 LGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQD----KADDYVVATGVTTTVRDMCQI 256
Query: 398 WGEFITKSLKEGVKIPSSQTR 418
E + ++ +KI + R
Sbjct: 257 AFEHVGLDYRDFLKIDPAFFR 277
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 38.3 bits (87), Expect = 0.002
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 11 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK 63
F++G + +TG TGF G L L VK + + R+
Sbjct: 4 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVAD 56
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 38.3 bits (87), Expect = 0.002
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK 145
F++G + +TG TGF G L L VK + + R+
Sbjct: 4 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVAD 56
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 37.8 bits (86), Expect = 0.003
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIR 75
+L+ G TG++GK ++ + YV+ R + + + + +LI
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPT---YVLFRPEVVSNIDKVQMLLYFKQLGAKLIE 60
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 37.4 bits (85), Expect = 0.003
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQ 141
+L+ G TG++GK ++ + YV+ R + + +
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPT---YVLFRPEVVSNIDK 44
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 37.5 bits (85), Expect = 0.003
Identities = 16/154 (10%), Positives = 44/154 (28%), Gaps = 26/154 (16%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
IL+ GATG++G+ + + L +++VR S ++ +
Sbjct: 6 ILLIGATGYIGRHVAKASLDLGHPT---FLLVRESTASSNSEKAQLLES----------- 51
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
+V ++ ++ + + + + +Q + A
Sbjct: 52 ------------FKASGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAI 99
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHY 253
+ + S ++ + E
Sbjct: 100 KEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVK 133
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 37.1 bits (84), Expect = 0.004
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK 63
IL+ GATG++G+ + + L +++VR S ++
Sbjct: 6 ILLIGATGYIGRHVAKASLDLGHPT---FLLVRESTASSNSEKAQL 48
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 545 | |||
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.98 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.97 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.97 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.97 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.97 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.97 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.96 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.96 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.96 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.96 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.96 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.96 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.96 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.95 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.95 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.94 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.94 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.94 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.93 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.92 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.9 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.89 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.88 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.88 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.88 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.88 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.86 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.76 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.61 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.6 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.59 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.59 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.59 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.59 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.58 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.57 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.57 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.57 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.56 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.56 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.56 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.56 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.56 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.55 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.55 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.55 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.54 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.54 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.54 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.53 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.53 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.53 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.53 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.53 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.52 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.52 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.52 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.51 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.51 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.49 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.48 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.48 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.47 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.46 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.46 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.46 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.46 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.45 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.44 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.44 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.43 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.43 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.42 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.42 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.41 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.39 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.38 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.38 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.37 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.36 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.36 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.34 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.32 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.3 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.27 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.21 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.19 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.14 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.07 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.0 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 98.99 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 98.99 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 98.93 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 98.9 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.53 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.46 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.12 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.07 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.9 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.86 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.71 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.47 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.39 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.38 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.15 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.15 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.07 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.94 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.92 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.9 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 95.66 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.56 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 95.56 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.47 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.45 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.44 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 95.35 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.2 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 95.2 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 95.05 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 94.82 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 94.79 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 94.61 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.48 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.37 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 94.36 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.3 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.22 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.1 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 93.92 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 93.84 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 93.81 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.71 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 93.68 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.6 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 92.57 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 92.53 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 92.28 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.02 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 91.31 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 91.28 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 91.16 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 90.59 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 90.08 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 89.97 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 89.2 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 88.46 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 87.9 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 87.79 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 87.36 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 87.05 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 86.99 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 86.74 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 86.71 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 86.68 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 86.42 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 86.33 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 86.09 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 86.03 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 85.57 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 85.46 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 85.37 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 85.37 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 84.8 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 84.62 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 84.26 | |
| d2jq4a1 | 83 | Hypothetical protein Atu2571 {Agrobacterium tumefa | 83.81 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 83.81 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 83.65 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 83.47 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 83.12 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 83.02 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 83.01 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 82.9 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 82.27 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 82.24 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 81.87 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 81.83 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 81.62 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 81.57 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 81.34 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 81.19 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 81.07 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 80.72 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 80.4 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 80.14 |
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=4.9e-31 Score=261.41 Aligned_cols=253 Identities=18% Similarity=0.078 Sum_probs=195.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcC---EEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVK---TIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~---~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
|+|||||||||||++|+++|++.|+.+. +|+.+.+....... ..+.. .......+++. |+. +
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~-~~~~~-------~~~~~~~~~~~~d~~------~ 66 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-ANLAP-------VDADPRLRFVHGDIR------D 66 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-GGGGG-------GTTCTTEEEEECCTT------C
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH-hHhhh-------hhcCCCeEEEEeccc------c
Confidence 6899999999999999999999987654 46666554322211 11100 00111233344 665 5
Q ss_pred HHHHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
..........+|+|+|+|+..... ......+++|+.||.+++++|.+. ++++|||+||.++++... +++|+...
T Consensus 67 ~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~I~~Ss~~~yg~~~~~~~~E~~~~ 145 (322)
T d1r6da_ 67 AGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQVYGSIDSGSWTESSPL 145 (322)
T ss_dssp HHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGCCCSSSCBCTTSCC
T ss_pred chhhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHc-CCceEEEeecceeecCCCCCCCCCCCCC
Confidence 667777888999999999876433 334677899999999999999997 789999999999998754 45665433
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
.|. +.|+.||..+|.+++.+. .+++++++||+.|||+...+ +
T Consensus 146 ~p~------------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~-----~- 189 (322)
T d1r6da_ 146 EPN------------------------------SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP-----E- 189 (322)
T ss_dssp CCC------------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT-----T-
T ss_pred CCC------------------------------CHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCc-----C-
Confidence 332 689999999999999876 78999999999999986432 1
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
.....++..+..|....+++++++.+|++||+|+|++++.++.+... +++||++++ +++++.|+++.+.
T Consensus 190 -~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~~~~--------~~~~ni~~~--~~~s~~e~~~~i~ 258 (322)
T d1r6da_ 190 -KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRA--------GEIYHIGGG--LELTNRELTGILL 258 (322)
T ss_dssp -SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCCT--------TCEEEECCC--CEEEHHHHHHHHH
T ss_pred -cHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHhCCCC--------CCeeEEeec--ccchhHHHHHHHH
Confidence 12355677777777666789999999999999999999999987765 789999998 8999999999999
Q ss_pred Hhhccc
Q psy16252 407 KEGVKI 412 (545)
Q Consensus 407 ~~~~~~ 412 (545)
+.++..
T Consensus 259 ~~~~~~ 264 (322)
T d1r6da_ 259 DSLGAD 264 (322)
T ss_dssp HHHTCC
T ss_pred HHhCCC
Confidence 998763
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-32 Score=272.37 Aligned_cols=258 Identities=14% Similarity=0.029 Sum_probs=186.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.|+ +|++++|..... ...++...... ......+.+++. |++ +.+.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~---~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~Dl~------d~~~ 69 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY---EVHGIKRRASSF-NTERVDHIYQD--PHTCNPKFHLHYGDLS------DTSN 69 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEECC------------------------CCEEECCCCSS------CHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC---EEEEEECCCccc-chhhHHHHHhh--hhhcCCCeEEEEeecC------CHHH
Confidence 7899999999999999999999976 688999865432 12222221111 001112334444 777 7788
Q ss_pred HHHHhcCc--cEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccccCCC--ccccccc
Q psy16252 177 KRLVTSKV--NLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNSYRK--NIEEIIY 247 (545)
Q Consensus 177 ~~~l~~~v--d~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~~~~--~i~E~~~ 247 (545)
+.++++++ |+|||+||..+.. .++..++++|+.||.+|+++|++. .+.++|||+||+++||... +++|+..
T Consensus 70 ~~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~ 149 (357)
T d1db3a_ 70 LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTP 149 (357)
T ss_dssp HHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSC
T ss_pred HHHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCC
Confidence 99888855 9999999986532 445678899999999999999986 2445899999999997643 5666643
Q ss_pred CCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCcc
Q psy16252 248 KAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
..|. +.|+.||+.+|.+++.++ .+++++++||++|||++..+. ..
T Consensus 150 ~~P~------------------------------~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~--~~- 196 (357)
T d1db3a_ 150 FYPR------------------------------SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGET--FV- 196 (357)
T ss_dssp CCCC------------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTT--SH-
T ss_pred CCCC------------------------------ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcC--CC-
Confidence 3332 789999999999999887 689999999999999854321 00
Q ss_pred CccchHHHHHHHhcCce-eEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHH
Q psy16252 326 NLYGPTGLVTGAQAGVV-RTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITK 404 (545)
Q Consensus 326 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~ 404 (545)
.......+.....|.. ....++++..+|+++|+|+|++++.++.... +++||++++ +++|+.|+++.
T Consensus 197 -~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~~~~~---------~~~yni~sg--~~~s~~~~~~~ 264 (357)
T d1db3a_ 197 -TRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQ---------PEDFVIATG--VQYSVRQFVEM 264 (357)
T ss_dssp -HHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSSS---------CCCEEECCC--CCEEHHHHHHH
T ss_pred -chHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHHHHhCCC---------CCeEEECCC--CceehHHHHHH
Confidence 1112334444444443 4456888999999999999999999886543 579999999 89999999999
Q ss_pred HHHhhccc
Q psy16252 405 SLKEGVKI 412 (545)
Q Consensus 405 l~~~~~~~ 412 (545)
+.+.++..
T Consensus 265 ~~~~~g~~ 272 (357)
T d1db3a_ 265 AAAQLGIK 272 (357)
T ss_dssp HHHTTTEE
T ss_pred HHHHhCCc
Confidence 99998754
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.4e-31 Score=263.89 Aligned_cols=250 Identities=17% Similarity=0.072 Sum_probs=183.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|||||||||||++|+++|++.|+ +|+++.|...... +.+.. ...... |+.+.+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~---~V~~~d~~~~~~~--~~~~~------------~~~~~~~d~~~~~------ 57 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGH---EVTVVDNFFTGRK--RNVEH------------WIGHENFELINHD------ 57 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCG--GGTGG------------GTTCTTEEEEECC------
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCCcCCH--HHHHH------------hcCCCceEEEehH------
Confidence 38899999999999999999999976 6788877433211 11110 011111 333222
Q ss_pred HHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
.++.++.++|+|||+||.+... .+....+++|+.||.+|+++|++. ++ +|||+||.++++... ++.|+.....
T Consensus 58 ~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~-~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~ 135 (312)
T d2b69a1 58 VVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSEVYGDPEVHPQSEDYWGHV 135 (312)
T ss_dssp TTSCCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGGGGBSCSSSSBCTTCCCBC
T ss_pred HHHHHHcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEChheecCCCCCCCCccccCCC
Confidence 1233446899999999986532 345677899999999999999997 55 799999999998643 4555432110
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCcc
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLY 328 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~ 328 (545)
+| ....+.|+.||..+|.++..++ .+++++++||+.|||++..+.. ..
T Consensus 136 ----------------------~~---~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~-----~~ 185 (312)
T d2b69a1 136 ----------------------NP---IGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMND-----GR 185 (312)
T ss_dssp ----------------------CS---SSTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTC-----CC
T ss_pred ----------------------CC---CCCccHHHHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCC-----cc
Confidence 00 0011689999999999998876 6999999999999998654321 11
Q ss_pred chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 329 GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 329 ~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
....++..+..|....+++++...++++||+|+|++++.++.... +++||++++ .++++.++++.+.+.
T Consensus 186 ~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~~---------~~~~n~~~~--~~~~~~~~~~~i~~~ 254 (312)
T d2b69a1 186 VVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV---------SSPVNLGNP--EEHTILEFAQLIKNL 254 (312)
T ss_dssp HHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSC---------CSCEEESCC--CEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhcc---------CCceEecCC--cccchhhHHHHHHHH
Confidence 234567777778777788999999999999999999999886543 578999999 899999999999999
Q ss_pred hccc
Q psy16252 409 GVKI 412 (545)
Q Consensus 409 ~~~~ 412 (545)
++..
T Consensus 255 ~~~~ 258 (312)
T d2b69a1 255 VGSG 258 (312)
T ss_dssp HTCC
T ss_pred hCCC
Confidence 8764
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.97 E-value=1.4e-30 Score=262.04 Aligned_cols=262 Identities=17% Similarity=0.131 Sum_probs=192.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|++.|++ .|+++.+...... .+++... ....+.+++. |++ +.+.
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~--vv~~~d~~~~~~~-~~~~~~~-------~~~~~~~~~~~Dl~------d~~~ 64 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGN-LESLSDI-------SESNRYNFEHADIC------DSAE 64 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCC-GGGGTTT-------TTCTTEEEEECCTT------CHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCC--EEEEEeCCCcccc-HHHHHhh-------hhcCCcEEEEccCC------CHHH
Confidence 68999999999999999999999874 4666655433222 1122111 1112334444 887 6778
Q ss_pred HHHHhc--CccEEEEccccccchH---HHHHHHHHhHHHHHHHHHHHHHcc--------CCceEEEEeccccccCCC--c
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFDE---ELKEAIRTNMCATQTMLDLAKQCK--------NLKMFTYVSTAFSNSYRK--N 241 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~~---~~~~~~~~Nv~gt~~ll~~a~~~~--------~~~~~v~vSS~~v~~~~~--~ 241 (545)
+..+++ ++|+|||+||...... .+...+++|+.||.+++++|++.. ++++|||+||..+++... .
T Consensus 65 l~~~~~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~ 144 (361)
T d1kewa_ 65 ITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPD 144 (361)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGG
T ss_pred HHHHHHhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCC
Confidence 888776 5899999999865433 235688999999999999998752 346999999999998754 2
Q ss_pred ccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCC
Q psy16252 242 IEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEP 319 (545)
Q Consensus 242 i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~ 319 (545)
..|.....|... + .+ .....+.|+.||.++|.++..+. .+++++++||+.|||++..+
T Consensus 145 ~~~~~~~~~~~~------------e-----~~---~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~ 204 (361)
T d1kewa_ 145 EVENSVTLPLFT------------E-----TT---AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP 204 (361)
T ss_dssp GSCTTSCCCCBC------------T-----TS---CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT
T ss_pred ccccccCCCCcc------------c-----CC---CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCc
Confidence 222222222100 0 00 01112789999999999999876 78999999999999985432
Q ss_pred CCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHH
Q psy16252 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWG 399 (545)
Q Consensus 320 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~ 399 (545)
+. ....++..+..|....+++++++.++|+||+|+|++++.++.+... +++||++++ +++++.
T Consensus 205 -----~~--~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a~ai~~~~~~~~~--------~~~~Ni~s~--~~~s~~ 267 (361)
T d1kewa_ 205 -----EK--LIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKA--------GETYNIGGH--NEKKNL 267 (361)
T ss_dssp -----TS--HHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCCT--------TCEEEECCC--CEEEHH
T ss_pred -----Cc--HHHHHHHHHHcCCCcEEeCCCCeEEeCEEHHHHHHHHHHHHhcCCC--------CCeEEECCC--CCcchH
Confidence 22 2245677777887777789999999999999999999999987665 789999998 899999
Q ss_pred HHHHHHHHhhccc
Q psy16252 400 EFITKSLKEGVKI 412 (545)
Q Consensus 400 el~~~l~~~~~~~ 412 (545)
|+++.+.+.++..
T Consensus 268 ~~~~~i~~~~~~~ 280 (361)
T d1kewa_ 268 DVVFTICDLLDEI 280 (361)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHhhhhcccc
Confidence 9999999886653
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=7.4e-30 Score=254.94 Aligned_cols=264 Identities=17% Similarity=0.120 Sum_probs=198.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|||||||||||++|+++|++.|+ +|++++|...+.. .++...... .........+++. |+. +..
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~---~V~~~d~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~d~~------d~~ 83 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQ---KVVGLDNFATGHQ--RNLDEVRSL-VSEKQWSNFKFIQGDIR------NLD 83 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCH--HHHHHHHHH-SCHHHHTTEEEEECCTT------SHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC---EEEEEECCCCcch--hhHHHHHHh-hhhcccCCeeEEeeccc------ccc
Confidence 48999999999999999999999987 6888887554321 222221111 0011112233333 665 667
Q ss_pred HHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
.........++|+|+|+..... ......+++|+.||.+++++|.++ ++++|||+||.++++... +++|+....|
T Consensus 84 ~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p 162 (341)
T d1sb8a_ 84 DCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDHPGLPKVEDTIGKP 162 (341)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCCSSBCTTCCCCC
T ss_pred ccccccccccccccccccccccccccCccchhheeehhHHHHHHHHHhc-CCceEEEcccceeeCCCCCCCccCCCCCCC
Confidence 7788888999999999876533 444668899999999999999997 789999999999998753 4666554433
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCcc
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLY 328 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~ 328 (545)
. +.|+.||..+|+++..+. .+++++|+||+.|||+...+...+. .
T Consensus 163 ~------------------------------~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~-~-- 209 (341)
T d1sb8a_ 163 L------------------------------SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYA-A-- 209 (341)
T ss_dssp C------------------------------SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTC-C--
T ss_pred C------------------------------CcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchh-h--
Confidence 2 789999999999998876 7899999999999998766532211 1
Q ss_pred chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 329 GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 329 ~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
....++..+..|....+.+++.+.++++||+|+|.++..++..... ..+++||++++ +++|+.|+++.+.+.
T Consensus 210 ~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~------~~~~~~~~~~~--~~~si~~i~~~i~~~ 281 (341)
T d1sb8a_ 210 VIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLD------ARNQVYNIAVG--GRTSLNQLFFALRDG 281 (341)
T ss_dssp HHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGG------GCSEEEEESCS--CCEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhhhhcccc------ccceeeeeccc--ccchHHHHHHHHHHH
Confidence 1234556667777667788999999999999999999888766543 24679999998 899999999999998
Q ss_pred hcccCC
Q psy16252 409 GVKIPS 414 (545)
Q Consensus 409 ~~~~~~ 414 (545)
.+....
T Consensus 282 ~~~~~~ 287 (341)
T d1sb8a_ 282 LAENGV 287 (341)
T ss_dssp HHHTTC
T ss_pred hccccc
Confidence 876543
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.97 E-value=1e-29 Score=256.17 Aligned_cols=257 Identities=17% Similarity=0.100 Sum_probs=188.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
++|+|||||||||||++|+++|+++|+ .|+++.|.+....... . ...++.. |+. +.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~---~V~~~d~~~~~~~~~~------------~--~~~~~~~~D~~------~~ 70 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGH---YVIASDWKKNEHMTED------------M--FCDEFHLVDLR------VM 70 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCSSSCGG------------G--TCSEEEECCTT------SH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEeCCCccchhhh------------c--ccCcEEEeech------hH
Confidence 579999999999999999999999976 6788877654321100 0 0112222 665 66
Q ss_pred HHHHHHhcCccEEEEccccccc----hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF----DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
+.+..+++++|+|||+|+.... .........+|+.||.+++++|++. ++++|||+||..+++... +.+|....
T Consensus 71 ~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~-~vk~~i~~SS~~~~~~~~~~~~~~~~~~ 149 (363)
T d2c5aa1 71 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQLETTNVSLK 149 (363)
T ss_dssp HHHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEGGGSCGGGSSSSSSCEEC
T ss_pred HHHHHHhhcCCeEeecccccccccccccccccccccccchhhHHHHhHHhh-Cccccccccccccccccccccccccccc
Confidence 7788888999999999987654 3445678899999999999999997 899999999999988643 22221100
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccC
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDN 326 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~ 326 (545)
. .+.. .....+.|+.||..+|++++.+. .+++++++||+.|||+.......+ .
T Consensus 150 ~--------------------~e~~---~~~p~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~--~ 204 (363)
T d2c5aa1 150 E--------------------SDAW---PAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGR--E 204 (363)
T ss_dssp G--------------------GGGS---SBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSC--C
T ss_pred c--------------------ccCC---cCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccc--c
Confidence 0 0000 01112789999999999998876 699999999999999865433221 1
Q ss_pred ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 327 LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
.............+.....++++.+.++|+|++|+|++++.++.... +++||++++ .++++.|+++.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~~~~---------~~~~ni~~~--~~~s~~~l~~~i~ 273 (363)
T d2c5aa1 205 KAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDF---------REPVNIGSD--EMVSMNEMAEMVL 273 (363)
T ss_dssp CHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSSC---------CSCEEECCC--CCEEHHHHHHHHH
T ss_pred ccccccccccccccccccccCCCCeEEEEeehhHHHHHHHHHHhCCC---------CCeEEEecC--CcccHHHHHHHHH
Confidence 11222333344445555677889999999999999999998876543 579999999 8999999999999
Q ss_pred Hhhccc
Q psy16252 407 KEGVKI 412 (545)
Q Consensus 407 ~~~~~~ 412 (545)
+..++.
T Consensus 274 ~~~g~~ 279 (363)
T d2c5aa1 274 SFEEKK 279 (363)
T ss_dssp HTTTCC
T ss_pred HHhCCC
Confidence 987764
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.6e-29 Score=249.51 Aligned_cols=261 Identities=15% Similarity=0.080 Sum_probs=186.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCC-HHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS-PQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~-~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|+|||||||||||++|++.|++.|+ .|++++|...+.. .... .......++++++ |++ +.+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~---~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~Dl~------d~~ 63 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVIILDNLCNSKRSVLPV--------IERLGGKHPTFVEGDIR------NEA 63 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCTTHHHH--------HHHHHTSCCEEEECCTT------CHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCCCcchhhHHH--------HHhhcCCCCEEEEeecC------CHH
Confidence 6799999999999999999999976 6788877544322 1111 1223334566666 887 778
Q ss_pred HHHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 176 DKRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 176 ~~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
.+.++++ ++|+|||+||..... ......+++|+.||.+++++|++. ++++|||+||..+++... ...|...+
T Consensus 64 ~l~~~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~-~v~~~i~~Ss~~vy~~~~~~~~~e~~~~ 142 (338)
T d1udca_ 64 LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSATVYGDQPKIPYVESFPT 142 (338)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCCSSSBCTTSCC
T ss_pred HHHHHHhccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHh-CCCEEEecCcceEEcccccccccccccc
Confidence 8888887 789999999976543 234678999999999999999997 899999999999987643 22222100
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeeccCCCCCCCCcc
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
....+.|+.+|..+|.++.+.. .+++++++||+.|||+...+.-|...
T Consensus 143 -----------------------------~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~ 193 (338)
T d1udca_ 143 -----------------------------GTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDP 193 (338)
T ss_dssp -----------------------------CCCSSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCC
T ss_pred -----------------------------CCCcchHHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCc
Confidence 0112789999999999998654 68999999999999987654322211
Q ss_pred C--ccchHHHHHH-Hhc-CceeEEec------CCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCc
Q psy16252 326 N--LYGPTGLVTG-AQA-GVVRTFLV------DPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNP 395 (545)
Q Consensus 326 ~--~~~~~~~~~~-~~~-g~~~~~~~------~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~ 395 (545)
. .......+.. +.. +....+.+ ++....||++|+|++.++..+...... ...+++||++++ ++
T Consensus 194 ~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~D~~~~~~~~~~~~~~-----~~~~~i~Ni~~~--~~ 266 (338)
T d1udca_ 194 QGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLAN-----KPGVHIYNLGAG--VG 266 (338)
T ss_dssp CSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHTT-----CCEEEEEEESCS--SC
T ss_pred cccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEeehhhhcccccccccc-----ccCcceeeecCC--CC
Confidence 1 0111222222 222 22233333 367788999999999988877664433 123579999998 89
Q ss_pred ccHHHHHHHHHHhhccc
Q psy16252 396 LTWGEFITKSLKEGVKI 412 (545)
Q Consensus 396 ~t~~el~~~l~~~~~~~ 412 (545)
+|+.|+++.+.+..|..
T Consensus 267 ~si~e~~~~i~~~~g~~ 283 (338)
T d1udca_ 267 NSVLDVVNAFSKACGKP 283 (338)
T ss_dssp EEHHHHHHHHHHHHTSC
T ss_pred CcHHHHHHHHHHHHCCC
Confidence 99999999999998753
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.97 E-value=9.9e-29 Score=247.18 Aligned_cols=265 Identities=16% Similarity=0.107 Sum_probs=191.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|||||||||||++|+++|++.|+++ .|+++.+...... ..++ ..+...+++++. |+. +.+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v-~v~~~d~~~~~~~-~~~~--------~~~~~~~i~~~~~Di~------d~~ 65 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLDKLTYAGN-KANL--------EAILGDRVELVVGDIA------DAE 65 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTC-EEEEEECCCTTCC-GGGT--------GGGCSSSEEEEECCTT------CHH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCe-EEEEEeCCCcccc-HHHH--------HHhhcCCeEEEEccCC------CHH
Confidence 4899999999999999999999998865 4555544322211 1111 112223344444 876 778
Q ss_pred HHHHHhcCccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCC
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTH 252 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~ 252 (545)
.+..++..++.|+|+|+..... .+....+++|+.||.++++.|... + .++|++||..+++... ..|.....+..
T Consensus 66 ~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~-~-~k~i~~ss~~vyg~~~-~~~~~~~~~~~ 142 (346)
T d1oc2a_ 66 LVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-D-IRFHHVSTDEVYGDLP-LREDLPGHGEG 142 (346)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-T-CEEEEEEEGGGGCCBC-CGGGSTTTTCS
T ss_pred HHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccc-c-ccccccccceEecccC-ccccccccccC
Confidence 8999999999999999987543 234577899999999999999987 4 5799999999987532 12221111000
Q ss_pred HHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 253 YSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
..+...+.+ .....+.|+.||..+|.+++.+. .+++++|+||++|||++.... ...
T Consensus 143 ------------~~~~~~e~~---~~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~-------~~~ 200 (346)
T d1oc2a_ 143 ------------PGEKFTAET---NYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-------KFI 200 (346)
T ss_dssp ------------TTSSBCTTS---CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-------SHH
T ss_pred ------------cccccccCC---CCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCcc-------chh
Confidence 000000000 01122789999999999998876 789999999999999754321 122
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhc
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~ 410 (545)
..++.....|....++++++..++++|++|+|++++.++.+... ++.||++++ ++.++.++++.+.+.++
T Consensus 201 ~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~~i~~~~~ 270 (346)
T d1oc2a_ 201 PRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRM--------GETYLIGAD--GEKNNKEVLELILEKMG 270 (346)
T ss_dssp HHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCCT--------TCEEEECCS--CEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCceeEeCCCCccccccchhhHHHHHHHHHhhccc--------Ccccccccc--ccccchHHHHHHHHHhC
Confidence 44555566677677889999999999999999999998887765 789999998 89999999999999877
Q ss_pred cc
Q psy16252 411 KI 412 (545)
Q Consensus 411 ~~ 412 (545)
..
T Consensus 271 ~~ 272 (346)
T d1oc2a_ 271 QP 272 (346)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.4e-28 Score=245.79 Aligned_cols=265 Identities=16% Similarity=0.082 Sum_probs=191.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|+++|+++|+ .+|+++.+...... + .....+.+++. |++. ..+.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~--~~V~~ld~~~~~~~---~----------~~~~~~~~~i~~Di~~-----~~~~ 60 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH--YEVYGLDIGSDAIS---R----------FLNHPHFHFVEGDISI-----HSEW 60 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT--CEEEEEESCCGGGG---G----------GTTCTTEEEEECCTTT-----CSHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--CEEEEEeCCCcchh---h----------hccCCCeEEEECccCC-----hHHH
Confidence 6899999999999999999999864 26888877543211 0 11112334455 8773 2234
Q ss_pred HHHHhcCccEEEEccccccchHH---HHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCCC
Q psy16252 177 KRLVTSKVNLVFHCAATLRFDEE---LKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAHT 251 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~~~---~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~~ 251 (545)
.+.+.+++|+|||+||....... ....+.+|+.||.+++++|.+. ++ +++++||..+++... ...|.....+.
T Consensus 61 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~-~~-~~~~~ss~~~~~~~~~~~~~~~~~~~~~ 138 (342)
T d2blla1 61 IEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-RK-RIIFPSTSEVYGMCSDKYFDEDHSNLIV 138 (342)
T ss_dssp HHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEECCGGGGBTCCCSSBCTTTCCCBC
T ss_pred HHHHHhCCCccccccccccccccccCCccccccccccccccccccccc-cc-cccccccccccccccccccccccccccc
Confidence 45567789999999998764333 3567899999999999999986 54 567889998887643 22222111110
Q ss_pred CHHHHHHhhhccCCchhHHHhhhhhcCCCC-chHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCcc
Q psy16252 252 HYSELLKISKLDVDDPKYQETRERLSHENM-NTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLY 328 (545)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~ 328 (545)
+ ....| +.|+.||.++|+++..+. .+++++|+||+.++|+...+..+-.....
T Consensus 139 ~------------------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~ 194 (342)
T d2blla1 139 G------------------------PVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSS 194 (342)
T ss_dssp C------------------------CTTCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBC
T ss_pred c------------------------ccCCCcchhhhcccchhhhhhhhhcccCceeEEeecccccccccccccccccccc
Confidence 0 00111 679999999999999887 68999999999999987655432222222
Q ss_pred -chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHH
Q psy16252 329 -GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLK 407 (545)
Q Consensus 329 -~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~ 407 (545)
....++..+..|....++++++..++++||+|+|+++..++.+... ...+++||++++. +++|+.|+++.+.+
T Consensus 195 ~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~~-----~~~g~~~Nig~~~-~~~t~~~l~~~i~~ 268 (342)
T d2blla1 195 RAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGN-----RCDGEIINIGNPE-NEASIEELGEMLLA 268 (342)
T ss_dssp HHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGG-----TTTTEEEEECCTT-SEEEHHHHHHHHHH
T ss_pred ccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeehhhccc-----cCCCeEEEEeccc-chhHHHHHHHHHHH
Confidence 2356677777888777889999999999999999999999887543 1246899998752 46899999999999
Q ss_pred hhcccCC
Q psy16252 408 EGVKIPS 414 (545)
Q Consensus 408 ~~~~~~~ 414 (545)
.++..+.
T Consensus 269 ~~~~~~~ 275 (342)
T d2blla1 269 SFEKHPL 275 (342)
T ss_dssp HHHTCTT
T ss_pred HhCCCcc
Confidence 9876544
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=1.7e-28 Score=242.85 Aligned_cols=253 Identities=14% Similarity=-0.011 Sum_probs=187.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|||||||||||++|++.|+++|+ +|++++|...... ..++..... ..+++++. |+. +.+.
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~---~V~~~~r~~~~~~-~~~l~~~~~-------~~~~~~~~~Dl~------d~~~ 63 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY---RVHGLVARRSSDT-RWRLRELGI-------EGDIQYEDGDMA------DACS 63 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSSCC-CHHHHHTTC-------GGGEEEEECCTT------CHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCCCccc-HHHHHHhcc-------cCCcEEEEcccc------ChHH
Confidence 6899999999999999999999976 7899998765432 234433111 12233444 887 5667
Q ss_pred HHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCC
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKA 249 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~ 249 (545)
+..... ..++++|+|+..... .....++.+|+.||.+++++|++.+..++|+++||+.+++... ..+|+.+..
T Consensus 64 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~ 143 (321)
T d1rpna_ 64 VQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFY 143 (321)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCC
T ss_pred hhhhhccccccccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCcc
Confidence 776665 457889988876543 3356778999999999999999985567899999998887643 344543332
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCc
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNL 327 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~ 327 (545)
|. +.|+.||..+|+++..+. .+++++++||+++||+...+ .+..
T Consensus 144 p~------------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~--~~~~-- 189 (321)
T d1rpna_ 144 PR------------------------------SPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGI--EFVT-- 189 (321)
T ss_dssp CC------------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCT--TSHH--
T ss_pred cc------------------------------ChhHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccc--cccH--
Confidence 22 789999999999999877 78999999999999985432 1111
Q ss_pred cchHHHHHHHhcCc-eeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHH
Q psy16252 328 YGPTGLVTGAQAGV-VRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSL 406 (545)
Q Consensus 328 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~ 406 (545)
.....++.....|. .....+++++.++|+||+|+|++++.++.++. ++.||++++ ++.++.++++.+.
T Consensus 190 ~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~~---------~~~~ni~~~--~~~s~~~~~~~~~ 258 (321)
T d1rpna_ 190 RKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK---------ADDYVVATG--VTTTVRDMCQIAF 258 (321)
T ss_dssp HHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS---------CCCEEECCS--CEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcCC---------cCCceeccc--ccceehhhhHHHH
Confidence 11233444444443 44457889999999999999999999987654 478999998 8999999999999
Q ss_pred Hhhccc
Q psy16252 407 KEGVKI 412 (545)
Q Consensus 407 ~~~~~~ 412 (545)
+..+..
T Consensus 259 ~~~~~~ 264 (321)
T d1rpna_ 259 EHVGLD 264 (321)
T ss_dssp HTTTCC
T ss_pred HHhCCC
Confidence 987753
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.9e-27 Score=237.78 Aligned_cols=265 Identities=17% Similarity=0.063 Sum_probs=184.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|.|||||||||||++|+++|++.|+ +|+++.|...+...... ....+...+++++. |+. +.+.
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~---~V~~~d~~~~~~~~~~~-------~~~~~~~~~v~~~~~Dl~------d~~~ 65 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGY---DCVVADNLSNSTYDSVA-------RLEVLTKHHIPFYEVDLC------DRKG 65 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSCCTHHHH-------HHHHHHTSCCCEEECCTT------CHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC---eEEEEECCCCcchhHHH-------hHHhhcccCCeEEEeecC------CHHH
Confidence 6799999999999999999999976 67888765443321110 11122234555566 887 6788
Q ss_pred HHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCc------cccc
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKN------IEEI 245 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~------i~E~ 245 (545)
++.++. ++|+|||+||..... +....+..+|+.||.+++++|++. ++++|||+||..+++.... ++|.
T Consensus 66 l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~-~i~~~i~~SS~~vyg~~~~~~~~~~~~e~ 144 (347)
T d1z45a2 66 LEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSATVYGDATRFPNMIPIPEE 144 (347)
T ss_dssp HHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCCGGGSTTCCSBCTT
T ss_pred HHHHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhc-ccceEEeecceeeecCcccCCCCCccccc
Confidence 888776 789999999986533 334677899999999999999997 8999999999999986532 2222
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceeeccCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVISTWKEPIP 321 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~g~~~~~~~ 321 (545)
... ...+.|+.||..+|++++.+. .+++++++||+.|||+...+.-
T Consensus 145 ~~~------------------------------~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~ 194 (347)
T d1z45a2 145 CPL------------------------------GPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLI 194 (347)
T ss_dssp SCC------------------------------CCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSC
T ss_pred cCC------------------------------CCCChhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCcc
Confidence 111 112789999999999998764 6799999999999998655433
Q ss_pred CCccC--ccchHHHHHHHhcC--ceeEEecC------CCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 322 GWIDN--LYGPTGLVTGAQAG--VVRTFLVD------PDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 322 g~~~~--~~~~~~~~~~~~~g--~~~~~~~~------~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|.... .......+.....+ ....+.++ +....|++++.+++.+++.++...... ......+++||++++
T Consensus 195 g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ni~~~ 273 (347)
T d1z45a2 195 GEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAY-NENEGLCREWNLGSG 273 (347)
T ss_dssp CCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHS-CTTCCEEEEEEESCS
T ss_pred CCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeeeeeeeecccccccccccccccc-cccccccccceecCC
Confidence 22111 11122233333222 22222333 345678888888999988877653320 011123579999998
Q ss_pred CCCcccHHHHHHHHHHhhccc
Q psy16252 392 KDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 392 ~~~~~t~~el~~~l~~~~~~~ 412 (545)
+++|+.|+++.+.+..+..
T Consensus 274 --~~~s~~e~~~~i~~~~~~~ 292 (347)
T d1z45a2 274 --KGSTVFEVYHAFCKASGID 292 (347)
T ss_dssp --CCEEHHHHHHHHHHHHTCC
T ss_pred --CcccHHHHHHHHHHHHCCC
Confidence 8999999999999998764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.7e-28 Score=243.02 Aligned_cols=260 Identities=17% Similarity=0.031 Sum_probs=183.8
Q ss_pred cEE-EEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 98 AEI-LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~V-lITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
|+| ||||||||||++|+++|++.|+ +|++++|..+.... .++...... .......+++++. |++ +.+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~---~V~~i~r~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~Dl~------d~~ 69 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY---EVHGIVRRSSSFNT-GRIEHLYKN-PQAHIEGNMKLHYGDLT------DST 69 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSSCCC-TTTGGGC----------CEEEEECCTT------CHH
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC---EEEEEECCCcccch-hhHHHHhhc-hhhhccCCcEEEEeecC------Cch
Confidence 456 9999999999999999999987 68999986543211 112111110 0000011233444 887 677
Q ss_pred HHHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHcc--CCceEEEEeccccccCCC--cccccc
Q psy16252 176 DKRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCK--NLKMFTYVSTAFSNSYRK--NIEEII 246 (545)
Q Consensus 176 ~~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~--~~~~~v~vSS~~v~~~~~--~i~E~~ 246 (545)
.+..++. ++++|+|+||..... .....++++|+.||.+++++|++++ +.++|||+||+.+||... ++.|+.
T Consensus 70 ~~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~ 149 (347)
T d1t2aa_ 70 CLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETT 149 (347)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTS
T ss_pred hhHHHHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCC
Confidence 8888876 567999999876543 3345677999999999999999862 345899999999998643 456654
Q ss_pred cCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCc
Q psy16252 247 YKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
...|. +.|+.||..+|++++.+. .+++++++||+.|||+...+.. .
T Consensus 150 ~~~P~------------------------------~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~--~ 197 (347)
T d1t2aa_ 150 PFYPR------------------------------SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANF--V 197 (347)
T ss_dssp CCCCC------------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTS--H
T ss_pred CCCCC------------------------------CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCc--c
Confidence 33332 789999999999998875 7899999999999998543211 0
Q ss_pred cCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHH
Q psy16252 325 DNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITK 404 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~ 404 (545)
.. .....+......+......+++++.+++++|+|+|++++.++.+... +.|++... ...++.+....
T Consensus 198 ~~-~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~ 265 (347)
T d1t2aa_ 198 TR-KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEP---------EDFVIATG--EVHSVREFVEK 265 (347)
T ss_dssp HH-HHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSSC---------CCEEECCS--CCEEHHHHHHH
T ss_pred cc-ccceeeehhhcCCcceeecCCCcceeeeeEecHHHHHHHHHhhcCCC---------ccceeccc--cccccchhhhh
Confidence 00 01112233333344455678899999999999999999999877543 57888877 78999999998
Q ss_pred HHHhhccc
Q psy16252 405 SLKEGVKI 412 (545)
Q Consensus 405 l~~~~~~~ 412 (545)
+....++.
T Consensus 266 ~~~~~~~~ 273 (347)
T d1t2aa_ 266 SFLHIGKT 273 (347)
T ss_dssp HHHHTTCC
T ss_pred hhhhhcce
Confidence 88877663
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.96 E-value=3.3e-28 Score=242.93 Aligned_cols=278 Identities=18% Similarity=0.144 Sum_probs=187.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
+||+|||||||||||++|+++|+++|+ .|++++|+... ...+...... .........+. |+. +.
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~---~V~~~vR~~~~---~~~~~~~~~~---~~~~~~~~~~~~Dl~------~~ 74 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGY---KVRGTARSASK---LANLQKRWDA---KYPGRFETAVVEDML------KQ 74 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSHHH---HHHHHHHHHH---HSTTTEEEEECSCTT------ST
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEeCCchh---HHHHHHhhhc---cccccccEEEecccc------ch
Confidence 389999999999999999999999976 68889996421 2222221111 00000111122 666 44
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCC--CCC
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKA--HTH 252 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~--~~~ 252 (545)
+.+..++.++|+|+|+|+...+..+....+..|+.||.+++++|.+.+++++|||+||..+.....+..+..+.. ..+
T Consensus 75 ~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~ 154 (342)
T d1y1pa1 75 GAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWN 154 (342)
T ss_dssp TTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCC
T ss_pred hhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccc
Confidence 567778899999999999988877778888999999999999999987899999999987654322211111111 111
Q ss_pred HHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEccceeeccCCCCCCCCccCcc
Q psy16252 253 YSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFRPSIVISTWKEPIPGWIDNLY 328 (545)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~ 328 (545)
.+.+..... ..++ ......+.|+.||..+|++++.+. .+++++++||+.|+|+...+.. ...
T Consensus 155 ~~~~~~~~~--~~e~--------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~----~~~ 220 (342)
T d1y1pa1 155 LESIDKAKT--LPES--------DPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPET----QSG 220 (342)
T ss_dssp HHHHHHHHH--SCTT--------STTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTT----CCC
T ss_pred ccccccccc--cccc--------CCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccc----ccc
Confidence 111110000 0000 001112679999999999887764 5688999999999998544321 122
Q ss_pred chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHh
Q psy16252 329 GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKE 408 (545)
Q Consensus 329 ~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~ 408 (545)
....++..+..|..... ..+....+++||+|+|++++.++.+... ++.|+++++ +++++.|+++.+.+.
T Consensus 221 ~~~~~~~~l~~g~~~~~-~~~~~~~~~v~v~Dva~~~i~~l~~~~~--------~g~~~~~~~--~~~t~~eia~~i~k~ 289 (342)
T d1y1pa1 221 STSGWMMSLFNGEVSPA-LALMPPQYYVSAVDIGLLHLGCLVLPQI--------ERRRVYGTA--GTFDWNTVLATFRKL 289 (342)
T ss_dssp HHHHHHHHHHTTCCCHH-HHTCCSEEEEEHHHHHHHHHHHHHCTTC--------CSCEEEECC--EEECHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCcCcc-cCCccceeeeeHHHHHHHHHHhhcCccc--------cceEEEEcC--CceEHHHHHHHHHHH
Confidence 33556666666654422 3455667999999999999998887665 455667777 789999999999988
Q ss_pred hcccC
Q psy16252 409 GVKIP 413 (545)
Q Consensus 409 ~~~~~ 413 (545)
++...
T Consensus 290 ~p~~~ 294 (342)
T d1y1pa1 290 YPSKT 294 (342)
T ss_dssp CTTSC
T ss_pred cCCCc
Confidence 74433
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.96 E-value=5.5e-28 Score=246.07 Aligned_cols=278 Identities=13% Similarity=0.048 Sum_probs=186.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe---cC-----------CCCCCHHHHHHhhHHHHHHhhhhcCCCcc
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV---RA-----------KKNQSPQQRIDKMLDTVAISLKFTCSTSK 162 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~---R~-----------~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 162 (545)
||+|||||||||||++|+++|++.|+ .|+++. |. .......+++.. +..+...+.+++
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~---~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~ 72 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNY---EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR-----WKALTGKSIELY 72 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHH-----HHHHHCCCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEecCCcccccccccccccccccchHHHHHH-----HHhhcCCCcEEE
Confidence 68999999999999999999999987 466653 21 111122222221 222223345566
Q ss_pred c-CCCCCCCCCCHHHHHHHhcC--ccEEEEccccccch------HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecc
Q psy16252 163 E-SAQAPDLGLSPDDKRLVTSK--VNLVFHCAATLRFD------EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA 233 (545)
Q Consensus 163 ~-Dl~~~~lgl~~~~~~~l~~~--vd~Vih~Aa~~~~~------~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~ 233 (545)
. |++ |.+.+..++++ +|+|||+||..... .....++.+|+.||.+++++|++.+..+.|+++||.
T Consensus 73 ~~Dl~------d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~ 146 (393)
T d1i24a_ 73 VGDIC------DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTM 146 (393)
T ss_dssp ESCTT------SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCG
T ss_pred EccCC------CHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccc
Confidence 6 887 77888888874 59999999975432 234567899999999999999998555678888888
Q ss_pred ccccCCC-cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccc
Q psy16252 234 FSNSYRK-NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPS 310 (545)
Q Consensus 234 ~v~~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~ 310 (545)
.+++... ...|....... ..... +........+.|+.||+.+|.++..+. .+++++++||+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~ 210 (393)
T d1i24a_ 147 GEYGTPNIDIEEGYITITH---------------NGRTD-TLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQG 210 (393)
T ss_dssp GGGCCCSSCBCSSEEEEEE---------------TTEEE-EEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ccccccccccccccccccc---------------ccccc-ccccccccccHHHHHhhhhcccccccccccceeeeecccc
Confidence 8876543 22222111000 00000 000011122789999999999998776 79999999999
Q ss_pred eeeccCCCCCCC--C------ccCcc--chHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCC
Q psy16252 311 IVISTWKEPIPG--W------IDNLY--GPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDP 380 (545)
Q Consensus 311 ~i~g~~~~~~~g--~------~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~ 380 (545)
+|||+...+... . .+... ....++.....|....+++++.+.+||+||+|+|++++.++.+...
T Consensus 211 ~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~------ 284 (393)
T d1i24a_ 211 VVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAK------ 284 (393)
T ss_dssp EEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCC------
T ss_pred cccCCCccccccccccccccccccccccchhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcc------
Confidence 999986543210 0 00011 1234566667777777889999999999999999999999987665
Q ss_pred CCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 381 SCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 381 ~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
.+.|++.+...+++++.++++.+.+..+..
T Consensus 285 --~g~~~~~~~~~~~~si~el~~~i~~~~~~~ 314 (393)
T d1i24a_ 285 --AGEFRVFNQFTEQFSVNELASLVTKAGSKL 314 (393)
T ss_dssp --TTCEEEEEECSEEEEHHHHHHHHHHHHHTT
T ss_pred --cceeeeecCCCCeeEHHHHHHHHHHHHHhh
Confidence 334443221126799999999998876543
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.3e-27 Score=236.06 Aligned_cols=266 Identities=15% Similarity=0.089 Sum_probs=183.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCC----CHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ----SPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~----~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
|+|||||||||||++|+++|++.|+ .|++++|..... ....++.. .......+..++. |++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~---~V~~ld~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~Dl~------ 68 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY---LPVVIDNFHNAFRGGGSLPESLRR-----VQELTGRSVEFEEMDIL------ 68 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC---CEEEEECSSSSCBCSSSSBHHHHH-----HHHHHTCCCEEEECCTT------
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC---EEEEEECCCccccccccchHHHHH-----HHHhcCCCcEEEEeecc------
Confidence 7899999999999999999999987 567776532221 11112211 1122234455565 887
Q ss_pred CHHHHHHHhc--CccEEEEccccccchH---HHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCccccccc
Q psy16252 173 SPDDKRLVTS--KVNLVFHCAATLRFDE---ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIY 247 (545)
Q Consensus 173 ~~~~~~~l~~--~vd~Vih~Aa~~~~~~---~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~ 247 (545)
+.+.+..+.. .+++|+|+||...... .+...+++|+.||.+++++|++. ++++|+|+||..+++..........
T Consensus 69 d~~~l~~~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~-~v~~~i~~ss~~~~~~~~~~~~~~~ 147 (346)
T d1ek6a_ 69 DQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSATVYGNPQYLPLDEA 147 (346)
T ss_dssp CHHHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGGCSCSSSSBCTT
T ss_pred ccccccccccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhc-Ccccccccccceeeecccccccccc
Confidence 6777877765 4568999999865432 34567899999999999999997 8999999999999887542111100
Q ss_pred CCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCEEEEccceeeccCCCCCCCCc
Q psy16252 248 KAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPVCIFRPSIVISTWKEPIPGWI 324 (545)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~~i~Rp~~i~g~~~~~~~g~~ 324 (545)
. ......+.|+.+|..+|+.+.++. .+++.+++||+.+||+.....-|..
T Consensus 148 ~---------------------------~~~~~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~ 200 (346)
T d1ek6a_ 148 H---------------------------PTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGED 200 (346)
T ss_dssp S---------------------------CCCCCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCC
T ss_pred c---------------------------cccccCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCcc
Confidence 0 001122789999999999998764 6899999999999998755432211
Q ss_pred cC--ccchHHHHHH--HhcCceeEEe------cCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCC
Q psy16252 325 DN--LYGPTGLVTG--AQAGVVRTFL------VDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDN 394 (545)
Q Consensus 325 ~~--~~~~~~~~~~--~~~g~~~~~~------~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~ 394 (545)
.. .......+.. ...+....+. .++.+.+|++|++|+|.++..++..... ...+++||++++ +
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~-----~~~~~i~Ni~~~--~ 273 (346)
T d1ek6a_ 201 PQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKE-----QCGCRIYNLGTG--T 273 (346)
T ss_dssp CSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTT-----TCCEEEEEECCS--C
T ss_pred ccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeEEEEEeccchhhhhcccccc-----ccCceEEEeCCC--C
Confidence 11 1111222222 2233333333 2456678999999999999887655433 123579999998 8
Q ss_pred cccHHHHHHHHHHhhccc
Q psy16252 395 PLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 395 ~~t~~el~~~l~~~~~~~ 412 (545)
++++.|+++.+.+.++..
T Consensus 274 ~~s~~dl~~~i~~~~~~~ 291 (346)
T d1ek6a_ 274 GYSVLQMVQAMEKASGKK 291 (346)
T ss_dssp CEEHHHHHHHHHHHHCSC
T ss_pred cccHHHHHHHHHHHhCCC
Confidence 999999999999998864
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.95 E-value=2.9e-27 Score=235.64 Aligned_cols=260 Identities=16% Similarity=0.030 Sum_probs=181.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|++||||||||||++|++.|++.|+ .|++++|..+... .+++...... .........++.. |+. +.+
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~---~V~~~~r~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~Di~------~~~ 69 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGY---EVHGLIRRSSNFN-TQRINHIYID-PHNVNKALMKLHYADLT------DAS 69 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSSCC-CTTTTTTC---------CCEEEEECCTT------CHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcC---EEEEEECCCcccc-hhhhhhhhhh-hhhccccceEEEEcccc------CHH
Confidence 38999999999999999999999987 7899999654211 1111111000 0001111122333 776 566
Q ss_pred HHHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHc----cCCceEEEEeccccccCCC-ccccc
Q psy16252 176 DKRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQC----KNLKMFTYVSTAFSNSYRK-NIEEI 245 (545)
Q Consensus 176 ~~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~----~~~~~~v~vSS~~v~~~~~-~i~E~ 245 (545)
.+...++ ++|+|||+||..... +.+...+..|+.|+.+++++++.+ ....++++.||.++++... .++|.
T Consensus 70 ~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E~ 149 (339)
T d1n7ha_ 70 SLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSET 149 (339)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTT
T ss_pred HHHHHHhhhccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCCCC
Confidence 7777664 679999999987654 344577899999999999998763 1345788888888877654 45565
Q ss_pred ccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCC
Q psy16252 246 IYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
....|. +.|+.||..+|+++..+. .+++++++||+.|||++..+ .+
T Consensus 150 ~~~~p~------------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~--~~ 197 (339)
T d1n7ha_ 150 TPFHPR------------------------------SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGE--NF 197 (339)
T ss_dssp SCCCCC------------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCT--TS
T ss_pred CCCCCc------------------------------chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCC--CC
Confidence 433332 789999999999998877 68999999999999985432 11
Q ss_pred ccCccchHHHHHHHhc-CceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHH
Q psy16252 324 IDNLYGPTGLVTGAQA-GVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFI 402 (545)
Q Consensus 324 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~ 402 (545)
... .....+..... +....+.+++.+.+|++||+|+|+++..++.+... ..+++..+ .+.++.+++
T Consensus 198 ~~~--~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a~~~~~~~~~~~~---------~~~~~~~~--~~~s~~~~~ 264 (339)
T d1n7ha_ 198 VTR--KITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKP---------DDYVVATE--EGHTVEEFL 264 (339)
T ss_dssp HHH--HHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSSC---------CEEEECCS--CEEEHHHHH
T ss_pred Ccc--hhhHHHHHHhcCCCCeEEeCCCCccccceeeehHHHHHHHHHhcCCC---------Cccccccc--cccccchhh
Confidence 111 11122222222 33345668889999999999999999999887654 56666666 789999999
Q ss_pred HHHHHhhccc
Q psy16252 403 TKSLKEGVKI 412 (545)
Q Consensus 403 ~~l~~~~~~~ 412 (545)
+.+.+..+..
T Consensus 265 ~~~~~~~~~~ 274 (339)
T d1n7ha_ 265 DVSFGYLGLN 274 (339)
T ss_dssp HHHHHHTTCC
T ss_pred hhhhhhhhcc
Confidence 9999987763
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=7e-27 Score=230.42 Aligned_cols=251 Identities=14% Similarity=0.032 Sum_probs=179.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.|+|||||||||||++|+++|++.|+ .|+++.+... . |+. +.+.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~---~vi~~~~~~~-~--------------------------~~~------~~~~ 45 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD---VELVLRTRDE-L--------------------------NLL------DSRA 45 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT---EEEECCCTTT-C--------------------------CTT------CHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcC---EEEEecCchh-c--------------------------ccc------CHHH
Confidence 58999999999999999999999876 3444332211 1 444 5566
Q ss_pred HHHHhc--CccEEEEccccccch----HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccC
Q psy16252 177 KRLVTS--KVNLVFHCAATLRFD----EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYK 248 (545)
Q Consensus 177 ~~~l~~--~vd~Vih~Aa~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~ 248 (545)
+..+++ .+|.|||+|+.+... .....++++|+.||.+++++|.+. ++++|||+||.++++... +++|+...
T Consensus 46 ~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~v~~~i~~SS~~vyg~~~~~~~~E~~~~ 124 (315)
T d1e6ua_ 46 VHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSCIYPKLAKQPMAESELL 124 (315)
T ss_dssp HHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGSCTTCCSSBCGGGTT
T ss_pred HHHHHhhcCCCEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECCceEcCCCCCCCccCCccc
Confidence 666655 589999999876432 334667899999999999999997 899999999999998643 45554321
Q ss_pred CCCCHHHHHHhhhccCCchhHHHhhhhhcCCCC-chHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCcc
Q psy16252 249 AHTHYSELLKISKLDVDDPKYQETRERLSHENM-NTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWID 325 (545)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~ 325 (545)
... ...+ +.|+.||..+|++++.+. .+++++|+||+.|||++.........
T Consensus 125 ~~~--------------------------~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~ 178 (315)
T d1e6ua_ 125 QGT--------------------------LEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSH 178 (315)
T ss_dssp SSC--------------------------CCGGGHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSS
T ss_pred cCC--------------------------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccc
Confidence 100 0111 469999999999999876 69999999999999986543211100
Q ss_pred --CccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccC-CCCCCCCEEEeecCCCCcccHHHHH
Q psy16252 326 --NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFH-KDPSCLPIYNYVNSKDNPLTWGEFI 402 (545)
Q Consensus 326 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~-~~~~~~~vy~i~~~~~~~~t~~el~ 402 (545)
..............+......+++...+++++++|++.++..++........ ........++++.+ .+.+..+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~ 256 (315)
T d1e6ua_ 179 VIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTG--VDCTIRELA 256 (315)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCS--CCEEHHHHH
T ss_pred cceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHHHhhhhccccccccccccccccccCCC--cchHHHHHH
Confidence 0011112233344455556778888999999999999999998766432100 01224578999888 889999999
Q ss_pred HHHHHhhccc
Q psy16252 403 TKSLKEGVKI 412 (545)
Q Consensus 403 ~~l~~~~~~~ 412 (545)
+.+.+..+..
T Consensus 257 ~~i~~~~~~~ 266 (315)
T d1e6ua_ 257 QTIAKVVGYK 266 (315)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHhCCC
Confidence 9999887753
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.94 E-value=5.7e-26 Score=230.19 Aligned_cols=284 Identities=13% Similarity=0.061 Sum_probs=179.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEec---CCCCCCH---HHHHHhhHHH---HHHhhhhcCCCccc-CCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR---AKKNQSP---QQRIDKMLDT---VAISLKFTCSTSKE-SAQ 166 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R---~~~~~~~---~~rl~~~~~~---~~~~~~~~~~~~~~-Dl~ 166 (545)
+|+|||||||||||++|+++|++.+ ...|+++.+ +...... .+.....+.. ...........++. |++
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~--~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~ 79 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDT--NHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR 79 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHC--CCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhC--CCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence 5899999999999999999999752 236888764 2211111 1111111111 00001111122333 777
Q ss_pred CCCCCCCHHHHHHHhc---CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC
Q psy16252 167 APDLGLSPDDKRLVTS---KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 167 ~~~lgl~~~~~~~l~~---~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~ 240 (545)
|.+.+.++++ ++|+|||+||..... ......+++|+.+|.+++++|++. ++++++++||..+++...
T Consensus 80 ------d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~-~~~~~~~~~s~~~~~~~~ 152 (383)
T d1gy8a_ 80 ------NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFSSSAAIFGNPT 152 (383)
T ss_dssp ------CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGTBSCC
T ss_pred ------CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhcc-CCcccccccccccccccc
Confidence 6677777765 679999999987543 234567899999999999999997 889999999998887643
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCC
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKE 318 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~ 318 (545)
.........|. .++ ......+.|+.||+.+|++++.+. .+++++++||+.|||+...
T Consensus 153 ~~~~~~~~~~~-------------~e~--------~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~ 211 (383)
T d1gy8a_ 153 MGSVSTNAEPI-------------DIN--------AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHED 211 (383)
T ss_dssp C-----CCCCB-------------CTT--------SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTT
T ss_pred ccccccccccc-------------ccc--------cCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCcc
Confidence 21100000000 000 000112789999999999999876 7999999999999998765
Q ss_pred CCC-CCccCccchHH-HHHHH----------------hcCceeEEe------cCCCCcccceehHHHHHHHHhccccccc
Q psy16252 319 PIP-GWIDNLYGPTG-LVTGA----------------QAGVVRTFL------VDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 319 ~~~-g~~~~~~~~~~-~~~~~----------------~~g~~~~~~------~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
+.. .+......... ++..+ ..+....+. +++.+.+||+||+|+|++++.++.....
T Consensus 212 ~~~~~~~~~~~~~ip~ii~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~ 291 (383)
T d1gy8a_ 212 GDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEK 291 (383)
T ss_dssp SSCSCCSTTCCSHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccchhHHHHHHHHHhhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhcc
Confidence 421 12111111111 11111 111111222 2467778999999999999998765332
Q ss_pred cc-CCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 375 RF-HKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 375 ~~-~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
.- .......++||++++ +++++.|+++.+.+..+..
T Consensus 292 ~~~~~~~~~~~i~Ni~s~--~~~s~~el~~~i~~~~~~~ 328 (383)
T d1gy8a_ 292 LGPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTGHP 328 (383)
T ss_dssp CCTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHCCC
T ss_pred ccccccccCccEEEeCCC--CceeHHHHHHHHHHHhCCC
Confidence 00 001123579999998 8999999999999987754
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.5e-26 Score=213.53 Aligned_cols=210 Identities=20% Similarity=0.195 Sum_probs=155.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
+++|+|||||||||+|++|+++|+++| .+.+|++++|++...... .. ...+... |+. +
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g-~~~~v~~~~R~~~~~~~~-~~-------------~~i~~~~~D~~------~ 70 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRRKLTFDEE-AY-------------KNVNQEVVDFE------K 70 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESSCCCCCSG-GG-------------GGCEEEECCGG------G
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCC-CCCEEEEEecChhhhccc-cc-------------ceeeeeeeccc------c
Confidence 456899999999999999999999996 356899999976543211 00 0111111 544 4
Q ss_pred HHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCH
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHY 253 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~ 253 (545)
.+++...++++|+|||+|+......+...+.++|+.++.+++++|.+. ++++|||+||..++...
T Consensus 71 ~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~v~~fi~~Ss~~~~~~~-------------- 135 (232)
T d2bkaa1 71 LDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAG-GCKHFNLLSSKGADKSS-------------- 135 (232)
T ss_dssp GGGGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTTC--------------
T ss_pred cccccccccccccccccccccccccchhhhhhhcccccceeeeccccc-CccccccCCccccccCc--------------
Confidence 567788889999999999988777777888999999999999999997 89999999999876432
Q ss_pred HHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCC-EEEEccceeeccCCCCCCCCccCccchHH
Q psy16252 254 SELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFP-VCIFRPSIVISTWKEPIPGWIDNLYGPTG 332 (545)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~-~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~ 332 (545)
.+.|+.+|+.+|+.+.+. +++ ++|+|||.|+|+.... .....
T Consensus 136 ---------------------------~~~Y~~~K~~~E~~l~~~--~~~~~~IlRP~~i~G~~~~~--------~~~~~ 178 (232)
T d2bkaa1 136 ---------------------------NFLYLQVKGEVEAKVEEL--KFDRYSVFRPGVLLCDRQES--------RPGEW 178 (232)
T ss_dssp ---------------------------SSHHHHHHHHHHHHHHTT--CCSEEEEEECCEEECTTGGG--------SHHHH
T ss_pred ---------------------------cchhHHHHHHhhhccccc--cccceEEecCceeecCCCcC--------cHHHH
Confidence 267999999999999885 454 8999999999975432 11111
Q ss_pred HHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 333 LVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 333 ~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
+...... . ..........|+++|+|++++.++..+.. ++++.+.+
T Consensus 179 ~~~~~~~-~----~~~~~~~~~~I~~~dvA~a~i~~~~~~~~--------~~~~i~~~ 223 (232)
T d2bkaa1 179 LVRKFFG-S----LPDSWASGHSVPVVTVVRAMLNNVVRPRD--------KQMELLEN 223 (232)
T ss_dssp HHHHHHC-S----CCTTGGGGTEEEHHHHHHHHHHHHTSCCC--------SSEEEEEH
T ss_pred HHHHHhh-c----cCCcccCCCeEEHHHHHHHHHHHHhcCcc--------CCeEEEcH
Confidence 2222222 1 12333445679999999999998877665 56777655
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.94 E-value=5.6e-25 Score=218.58 Aligned_cols=272 Identities=16% Similarity=0.076 Sum_probs=180.7
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDDK 177 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~~ 177 (545)
+|||||||||||++|+++|+++|+ +|+++.|-... ....++... ....+.+++. |++ +.+.+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~---~V~~id~~~~~-~~~~~~~~~-------~~~~~~~~i~~Di~------~~~~l 64 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI---DLIVFDNLSRK-GATDNLHWL-------SSLGNFEFVHGDIR------NKNDV 64 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCST-THHHHHHHH-------HTTCCCEEEECCTT------CHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC---EEEEEECCCcc-cchhHHHHh-------hccCCcEEEEcccC------CHHHH
Confidence 699999999999999999999976 67787654332 222222211 1123445555 887 67888
Q ss_pred HHHhcC--ccEEEEccccccchH---HHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC-CCc--ccccccCC
Q psy16252 178 RLVTSK--VNLVFHCAATLRFDE---ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY-RKN--IEEIIYKA 249 (545)
Q Consensus 178 ~~l~~~--vd~Vih~Aa~~~~~~---~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~-~~~--i~E~~~~~ 249 (545)
.+++++ +|+|||+||.+.... +.....++|+.||.+|+++|.+. +++++++.||..++.. ... ..+.....
T Consensus 65 ~~~~~~~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~ 143 (338)
T d1orra_ 65 TRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLEQYKYNETETRY 143 (338)
T ss_dssp HHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCTTSCEEECSSCE
T ss_pred HHHHHhcCCceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhcc-cccccccccccccccccccccccccccccc
Confidence 888875 499999999876543 34678899999999999999998 6666666666554433 221 11110000
Q ss_pred CCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCc
Q psy16252 250 HTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNL 327 (545)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~ 327 (545)
+.. ...... .........+.|+.+|..+|.++.... .+....++|+..+|++...+... .
T Consensus 144 ~~~-----------~~~~~~---~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-- 205 (338)
T d1orra_ 144 TCV-----------DKPNGY---DESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYD--Q-- 205 (338)
T ss_dssp EET-----------TCTTCB---CTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTT--B--
T ss_pred ccc-----------ccccCc---ccCCccccccccccccchhhhhhhhhhhccCcccccccccceeecccccccc--c--
Confidence 000 000000 000001123789999999999998776 78999999999999875433211 0
Q ss_pred cchHHHHHHH-----hcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHH
Q psy16252 328 YGPTGLVTGA-----QAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFI 402 (545)
Q Consensus 328 ~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~ 402 (545)
.....++..+ ..+....+++++...++++||+|+|++++.++.+... ..+++||+..+..+++++.|++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~v~D~~~~~~~~l~~~~~------~~~~~~~i~~~~~~~~s~~e~~ 279 (338)
T d1orra_ 206 GWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSK------IRGNAFNIGGTIVNSLSLLELF 279 (338)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHH------HTTCEEEESSCGGGEEEHHHHH
T ss_pred cccchhhHHHHHHHhccCCceEEeCCCceeEeeecccchhhHHHHHHhcccc------ccCccccccccccccccHHHHH
Confidence 1112222222 2244456778999999999999999999999876432 1478999966544789999999
Q ss_pred HHHHHhhccc
Q psy16252 403 TKSLKEGVKI 412 (545)
Q Consensus 403 ~~l~~~~~~~ 412 (545)
+.+.+..+..
T Consensus 280 ~~i~~~~~~~ 289 (338)
T d1orra_ 280 KLLEDYCNID 289 (338)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHCCC
Confidence 9999987754
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.93 E-value=1.5e-24 Score=217.22 Aligned_cols=262 Identities=14% Similarity=0.090 Sum_probs=183.7
Q ss_pred hhhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhh-hcCCCccc-CCCCCC
Q psy16252 92 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK-FTCSTSKE-SAQAPD 169 (545)
Q Consensus 92 ~~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~-~~~~~~~~-Dl~~~~ 169 (545)
.+|+++|+|||||||||||++|+++|++.|+ .|+++.|........ +...+ ...++++. |++
T Consensus 3 ~~~~~~KkILVTG~tGfIGs~lv~~Ll~~g~---~V~~~~r~~~~~~~~----------~~~~~~~~~i~~~~~Dl~--- 66 (356)
T d1rkxa_ 3 NSFWQGKRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYSLTAPTVPSL----------FETARVADGMQSEIGDIR--- 66 (356)
T ss_dssp HHHHTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCSSSSCH----------HHHTTTTTTSEEEECCTT---
T ss_pred hhhhCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCccHHH----------HhhhhcccCCeEEEeecc---
Confidence 4689999999999999999999999999986 688899976543321 11111 11334444 887
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC---c
Q psy16252 170 LGLSPDDKRLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK---N 241 (545)
Q Consensus 170 lgl~~~~~~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~---~ 241 (545)
+.+.+.++.+ .+|+|+|+||..... ..+...+.+|+.|+.+++++|.+.+..+.+++.||..++.... .
T Consensus 67 ---d~~~l~~~~~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 143 (356)
T d1rkxa_ 67 ---DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWG 143 (356)
T ss_dssp ---CHHHHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSC
T ss_pred ---ChHhhhhhhhhchhhhhhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccc
Confidence 6677777766 569999999986432 3456788999999999999999976666777777766655432 2
Q ss_pred ccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----------cCCCEEEEccc
Q psy16252 242 IEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----------QFFPVCIFRPS 310 (545)
Q Consensus 242 i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----------~~l~~~i~Rp~ 310 (545)
.+|.....| .+.|+.+|..+|..+..+. .++.++++||+
T Consensus 144 ~~~~~~~~p------------------------------~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (356)
T d1rkxa_ 144 YRENEAMGG------------------------------YDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAG 193 (356)
T ss_dssp BCTTSCBCC------------------------------SSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECC
T ss_pred cccccccCC------------------------------CCccccccccchhhhhHHhhhcccchhccccCceEEeccCC
Confidence 222221111 1689999999998887543 46889999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.+||+...+.. ..+..++.... +......+.+....++++|+|+|.+++.++..... .....+...+...
T Consensus 194 ~vyGp~~~~~~------~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~v~D~~~a~~~~~~~~~~---~~~~~~~~~~~~~ 263 (356)
T d1rkxa_ 194 NVIGGGDWALD------RIVPDILRAFE-QSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYT---DGAEYAEGWNFGP 263 (356)
T ss_dssp CEECTTCCCSS------CHHHHHHHHHH-TTCCEECSCTTCEECCEETHHHHHHHHHHHHHHHH---TCGGGCSEEECCC
T ss_pred CeeCCCcchhh------HHHHHHHHHHh-CCCceEEeeccccccccccccccchhhhhhhhhcc---ccccccccccccc
Confidence 99998643221 11233444443 44445678889999999999999999988876543 1111234455543
Q ss_pred CCCCcccHHHHHHHHHHhhccc
Q psy16252 391 SKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 391 ~~~~~~t~~el~~~l~~~~~~~ 412 (545)
.....+++.++++.+.+..+..
T Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~ 285 (356)
T d1rkxa_ 264 NDADATPVKNIVEQMVKYWGEG 285 (356)
T ss_dssp CGGGCEEHHHHHHHHHHHHCTT
T ss_pred ccccccccchhhhhhHHHhCCC
Confidence 3336789999999999998764
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.92 E-value=3.9e-24 Score=206.77 Aligned_cols=221 Identities=15% Similarity=0.089 Sum_probs=171.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|||||||||||++|+++|.+.|+ .|+++.|.+- |+. +.+.+
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~---~Vi~~~r~~~----------------------------D~~------d~~~~ 44 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNV---EVIPTDVQDL----------------------------DIT------NVLAV 44 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSE---EEEEECTTTC----------------------------CTT------CHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---EEEEeechhc----------------------------cCC------CHHHH
Confidence 7899999999999999999999876 6888877642 565 66677
Q ss_pred HHHhc--CccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 178 RLVTS--KVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 178 ~~l~~--~vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
+++++ ++|+|||+|+..... .........|+..+.++.+.+... ...++++||..+++... +..|...+.|
T Consensus 45 ~~~l~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--~~~~~~~ss~~v~~~~~~~~~~e~~~~~~ 122 (281)
T d1vl0a_ 45 NKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV--GAEIVQISTDYVFDGEAKEPITEFDEVNP 122 (281)
T ss_dssp HHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH--TCEEEEEEEGGGSCSCCSSCBCTTSCCCC
T ss_pred HHHHHHcCCCEEEeeccccccccccccchhhcccccccccccccccccc--cccccccccceeeeccccccccccccccc
Confidence 77776 569999999986533 334667788999999999988874 35788888888877643 3444433322
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
.+.|+.+|..+|+++.+. +.+.+|+||+.|||+... ..
T Consensus 123 ------------------------------~~~~~~~k~~~e~~~~~~--~~~~~i~R~~~vyG~~~~----------~~ 160 (281)
T d1vl0a_ 123 ------------------------------QSAYGKTKLEGENFVKAL--NPKYYIVRTAWLYGDGNN----------FV 160 (281)
T ss_dssp ------------------------------CSHHHHHHHHHHHHHHHH--CSSEEEEEECSEESSSSC----------HH
T ss_pred ------------------------------hhhhhhhhhHHHHHHHHh--CCCccccceeEEeCCCcc----------cc
Confidence 268999999999999885 689999999999997432 12
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhc
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~ 410 (545)
..++..+..+....+. ++...++++++|+|+++..++.+... ++||++++ +++|+.|+++.+.+.+|
T Consensus 161 ~~~~~~~~~~~~~~~~--~~~~~~~i~v~D~~~~~~~~~~~~~~---------g~~~~~~~--~~~s~~e~~~~i~~~~g 227 (281)
T d1vl0a_ 161 KTMINLGKTHDELKVV--HDQVGTPTSTVDLARVVLKVIDEKNY---------GTFHCTCK--GICSWYDFAVEIFRLTG 227 (281)
T ss_dssp HHHHHHHHHCSEEEEE--SSCEECCEEHHHHHHHHHHHHHHTCC---------EEEECCCB--SCEEHHHHHHHHHHHHC
T ss_pred cchhhhhccCCceeec--CCceeccchhhhhhhhhhhhhhhccc---------CceeEeCC--CccchHHHHHHHHHHhC
Confidence 3455555555544443 46889999999999999999877654 69999998 89999999999999988
Q ss_pred cc
Q psy16252 411 KI 412 (545)
Q Consensus 411 ~~ 412 (545)
..
T Consensus 228 ~~ 229 (281)
T d1vl0a_ 228 ID 229 (281)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.90 E-value=1.4e-22 Score=197.10 Aligned_cols=232 Identities=20% Similarity=0.161 Sum_probs=161.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|||||||||||++|++.|.+.|+ ++++.+....... |+. +.+.+
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~----~v~~~~~~~~~~~------------------------Dl~------~~~~~ 46 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN----LIALDVHSKEFCG------------------------DFS------NPKGV 46 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE----EEEECTTCSSSCC------------------------CTT------CHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC----EEEEECCCccccC------------------------cCC------CHHHH
Confidence 6799999999999999999998753 4455544322110 665 66778
Q ss_pred HHHhcC--ccEEEEccccccch---HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC--cccccccCCC
Q psy16252 178 RLVTSK--VNLVFHCAATLRFD---EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK--NIEEIIYKAH 250 (545)
Q Consensus 178 ~~l~~~--vd~Vih~Aa~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~--~i~E~~~~~~ 250 (545)
++++++ +|+|||+||.+... ......+.+|+.++.+++++|++. + .+++++||..++.... +.+|...+.|
T Consensus 47 ~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~~~ss~~~~~~~~~~~~~E~~~~~p 124 (298)
T d1n2sa_ 47 AETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-G-AWVVHYSTDYVFPGTGDIPWQETDATSP 124 (298)
T ss_dssp HHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-T-CEEEEEEEGGGSCCCTTCCBCTTSCCCC
T ss_pred HHHHHHcCCCEEEEecccccccccccCccccccccccccccchhhhhcc-c-cccccccccccccCCCCCCCccccccCC
Confidence 887764 59999999976543 344667899999999999999886 4 5688889988776543 4555543333
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccch
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~ 330 (545)
. +.|+.+|..+|..+.+.. ....++|++.+++.... ...
T Consensus 125 ~------------------------------~~y~~~k~~~e~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~ 163 (298)
T d1n2sa_ 125 L------------------------------NVYGKTKLAGEKALQDNC--PKHLIFRTSWVYAGKGN---------NFA 163 (298)
T ss_dssp S------------------------------SHHHHHHHHHHHHHHHHC--SSEEEEEECSEECSSSC---------CHH
T ss_pred C------------------------------chHhhhhhhhhhhHHhhh--cccccccccceeeccCC---------ccc
Confidence 2 789999999999998864 34566666666654211 111
Q ss_pred HHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhc
Q psy16252 331 TGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGV 410 (545)
Q Consensus 331 ~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~ 410 (545)
..+...+..+.... ..+....++++++|+++++..++..... .....++||++++ +.+++.++++.+.+..+
T Consensus 164 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~i~~~~~----~~~~~~~~n~~~~--~~~~~~~~~~~i~~~~~ 235 (298)
T d1n2sa_ 164 KTMLRLAKERQTLS--VINDQYGAPTGAELLADCTAHAIRVALN----KPEVAGLYHLVAG--GTTTWHDYAALVFDEAR 235 (298)
T ss_dssp HHHHHHHHHCSEEE--EECSCEECCEEHHHHHHHHHHHHHHHHH----CGGGCEEEECCCB--SCEEHHHHHHHHHHHHH
T ss_pred hhhhhhhcccceee--cccceeecccccchHHHHHHHHHhhhhc----cccccccccccCC--CceecHHHHHHHHhhhh
Confidence 22333333333322 2346688999999999998877653221 0113689999998 88999999999988766
Q ss_pred ccCC
Q psy16252 411 KIPS 414 (545)
Q Consensus 411 ~~~~ 414 (545)
....
T Consensus 236 ~~~~ 239 (298)
T d1n2sa_ 236 KAGI 239 (298)
T ss_dssp HHTC
T ss_pred ccCc
Confidence 5433
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.5e-22 Score=186.01 Aligned_cols=201 Identities=11% Similarity=-0.002 Sum_probs=150.2
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
..|+|+||||||++|++++++|+++|+ +|.+++|+...... ......+++. |+. +.
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~---~V~~~~R~~~~~~~--------------~~~~~~~~~~gD~~------d~ 58 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDSSRLPS--------------EGPRPAHVVVGDVL------QA 58 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCGGGSCS--------------SSCCCSEEEESCTT------SH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEEcChhhccc--------------cccccccccccccc------ch
Confidence 358899999999999999999999976 78999997543211 1112334444 777 77
Q ss_pred HHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHH
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYS 254 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~ 254 (545)
+++.++++++|+|||++|......+ ..++..++.++++++++. ++++||++||.+++.+......
T Consensus 59 ~~l~~al~~~d~vi~~~g~~~~~~~----~~~~~~~~~~l~~aa~~~-~v~r~i~~ss~~~~~~~~~~~~---------- 123 (205)
T d1hdoa_ 59 ADVDKTVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKAH-GVDKVVACTSAFLLWDPTKVPP---------- 123 (205)
T ss_dssp HHHHHHHTTCSEEEECCCCTTCCSC----CCHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCTTCSCG----------
T ss_pred hhHHHHhcCCCEEEEEeccCCchhh----hhhhHHHHHHHHHHHHhc-CCCeEEEEeeeeccCCCccccc----------
Confidence 8899999999999999987532221 245778999999999997 8999999999987754321100
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHH
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLV 334 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~ 334 (545)
....|...|..+|+++++ .+++++|+||+.+++....
T Consensus 124 -------------------------~~~~~~~~~~~~e~~l~~--~~~~~tiirp~~~~~~~~~---------------- 160 (205)
T d1hdoa_ 124 -------------------------RLQAVTDDHIRMHKVLRE--SGLKYVAVMPPHIGDQPLT---------------- 160 (205)
T ss_dssp -------------------------GGHHHHHHHHHHHHHHHH--TCSEEEEECCSEEECCCCC----------------
T ss_pred -------------------------cccccchHHHHHHHHHHh--cCCceEEEecceecCCCCc----------------
Confidence 014688999999999987 6899999999999874211
Q ss_pred HHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 335 TGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 335 ~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
|.. .+..++.....+|+++|+|++++.++.++.. .++.+.++.
T Consensus 161 -----~~~-~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~-------~g~~~~~s~ 203 (205)
T d1hdoa_ 161 -----GAY-TVTLDGRGPSRVISKHDLGHFMLRCLTTDEY-------DGHSTYPSH 203 (205)
T ss_dssp -----SCC-EEESSSCSSCSEEEHHHHHHHHHHTTSCSTT-------TTCEEEEEC
T ss_pred -----ccE-EEeeCCCCCCCcCCHHHHHHHHHHHhCCCCC-------CCEEEecCC
Confidence 111 2345667788899999999999999987764 466666553
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.88 E-value=5.1e-23 Score=190.35 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=133.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
.|+|||||||||||++|+++|+++|+ ..+|+++.|.+..... ++. .+.. +..+
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~-~~~v~~~~r~~~~~~~--~~~------------------~~~~------d~~~ 54 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPT-LAKVIAPARKALAEHP--RLD------------------NPVG------PLAE 54 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTT-CCEEECCBSSCCCCCT--TEE------------------CCBS------CHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEEEeCCchhhcc--ccc------------------cccc------chhh
Confidence 48999999999999999999999975 4478888887543221 000 0111 2222
Q ss_pred -HHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHH
Q psy16252 177 -KRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYS 254 (545)
Q Consensus 177 -~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~ 254 (545)
...+...+|+||||+|.... ......+.++|+.++.+++++|++. ++++|+|+||..+++..
T Consensus 55 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~v~~~i~~Ss~~~~~~~--------------- 118 (212)
T d2a35a1 55 LLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM-GARHYLVVSALGADAKS--------------- 118 (212)
T ss_dssp HGGGCCSCCSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTTC---------------
T ss_pred hhhccccchheeeeeeeeeccccccccccccchhhhhhhcccccccc-ccccccccccccccccc---------------
Confidence 22334468999999987532 2234677899999999999999997 89999999999876432
Q ss_pred HHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCC-CEEEEccceeeccCCCCCCCCccCccchHHH
Q psy16252 255 ELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFF-PVCIFRPSIVISTWKEPIPGWIDNLYGPTGL 333 (545)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l-~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~ 333 (545)
.+.|+.+|+.+|+.+.+. ++ +++|+||+.|||+....... ..
T Consensus 119 --------------------------~~~y~~~K~~~E~~l~~~--~~~~~~I~Rp~~v~G~~~~~~~~---------~~ 161 (212)
T d2a35a1 119 --------------------------SIFYNRVKGELEQALQEQ--GWPQLTIARPSLLFGPREEFRLA---------EI 161 (212)
T ss_dssp --------------------------SSHHHHHHHHHHHHHTTS--CCSEEEEEECCSEESTTSCEEGG---------GG
T ss_pred --------------------------ccchhHHHHHHhhhcccc--ccccceeeCCcceeCCcccccHH---------HH
Confidence 167999999999999774 45 48999999999985432110 00
Q ss_pred HHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 334 VTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 334 ~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
+.....+.+ ......|+++|+|++++.++.++..
T Consensus 162 ---~~~~~~~~~----~~~~~~i~v~DvA~ai~~~~~~~~~ 195 (212)
T d2a35a1 162 ---LAAPIARIL----PGKYHGIEACDLARALWRLALEEGK 195 (212)
T ss_dssp ---TTCCCC--------CHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred ---HHHHHhhcc----CCCCcEEEHHHHHHHHHHHHcCCCC
Confidence 011111111 2345679999999999999877654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.88 E-value=2.8e-22 Score=195.37 Aligned_cols=233 Identities=15% Similarity=0.107 Sum_probs=166.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|||||||||||++|+++|++.|+ +|++++|........++... ...+.....+++. |+. +..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~---~V~~l~R~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~------~~~ 68 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGH---PTFLLVRESTASSNSEKAQL-----LESFKASGANIVHGSID------DHA 68 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCCCCTTTTHHHHHH-----HHHHHTTTCEEECCCTT------CHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEECCCccccchhHHHH-----HHhhccCCcEEEEeecc------cch
Confidence 58899999999999999999999986 68999998765443333221 1222233444444 665 667
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSE 255 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~ 255 (545)
.+...+++++.|+|+++.... .++.++++++..+ +++++++.||...........
T Consensus 69 ~~~~~~~~~~~vi~~~~~~~~------------~~~~~~~~a~~~~-~~~~~~~~s~~~~~~~~~~~~------------ 123 (307)
T d1qyca_ 69 SLVEAVKNVDVVISTVGSLQI------------ESQVNIIKAIKEV-GTVKRFFPSEFGNDVDNVHAV------------ 123 (307)
T ss_dssp HHHHHHHTCSEEEECCCGGGS------------GGGHHHHHHHHHH-CCCSEEECSCCSSCTTSCCCC------------
T ss_pred hhhhhhhhceeeeeccccccc------------chhhHHHHHHHHh-ccccceeeecccccccccccc------------
Confidence 788888999999999986433 3455777888887 778888888865443221100
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHH
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVT 335 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~ 335 (545)
.....|...+...|..+.+ .+++++|+||+.++|+....+..+..
T Consensus 124 -----------------------~~~~~~~~~~~~~~~~~~~--~~~~~~i~r~~~v~g~~~~~~~~~~~---------- 168 (307)
T d1qyca_ 124 -----------------------EPAKSVFEVKAKVRRAIEA--EGIPYTYVSSNCFAGYFLRSLAQAGL---------- 168 (307)
T ss_dssp -----------------------TTHHHHHHHHHHHHHHHHH--HTCCBEEEECCEEHHHHTTTTTCTTC----------
T ss_pred -----------------------ccccccccccccccchhhc--cCCCceecccceecCCCccchhhhhh----------
Confidence 0014566777777877776 47999999999999986543322211
Q ss_pred HHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC-EEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 336 GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP-IYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 336 ~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~-vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
....+....+++.++..+++|+++|+|++++.++..+.. .++ +|+++++ +.+|+.|+++.+.+..|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~-------~~~~~~~~~~~--~~~s~~ei~~~~~~~~G~~ 237 (307)
T d1qyca_ 169 TAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRT-------LNKTLYLRLPA--NTLSLNELVALWEKKIDKT 237 (307)
T ss_dssp SSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGG-------TTEEEECCCGG--GEEEHHHHHHHHHHHTTSC
T ss_pred hhhhcccceeeecccccccCCcHHHHHHHHHHHhcChhh-------cCceeEEeCCC--CccCHHHHHHHHHHHHCCC
Confidence 123344455678899999999999999999999987765 344 5666777 8899999999999998874
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.88 E-value=3.2e-22 Score=195.89 Aligned_cols=238 Identities=13% Similarity=0.065 Sum_probs=171.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.++|||||||||||++|+++|+++|+ .|++++|+........ .. ....+....++++. |+. +.+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~~~~~~~~-~~-----~~~~~~~~~v~~v~~d~~------d~~ 67 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGH---PTYVLFRPEVVSNIDK-VQ-----MLLYFKQLGAKLIEASLD------DHQ 67 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCSCCSSCHHH-HH-----HHHHHHTTTCEEECCCSS------CHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCCcccchhH-HH-----HHhhhccCCcEEEEeecc------cch
Confidence 46799999999999999999999986 5889999876554321 11 11223334455555 776 778
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSE 255 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~ 255 (545)
.+..++++++++||+++.... ..|..++.+++++|.+. +..++++.||.++...... .+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~a~~~-~~~~~v~~Ss~g~~~~~~~-------~~----- 126 (312)
T d1qyda_ 68 RLVDALKQVDVVISALAGGVL--------SHHILEQLKLVEAIKEA-GNIKRFLPSEFGMDPDIME-------HA----- 126 (312)
T ss_dssp HHHHHHTTCSEEEECCCCSSS--------STTTTTHHHHHHHHHHS-CCCSEEECSCCSSCTTSCC-------CC-----
T ss_pred hhhhhccCcchhhhhhhhccc--------ccchhhhhHHHHHHHHh-cCCcEEEEeeccccCCCcc-------cc-----
Confidence 899999999999999886432 34667788899999987 5567788888765543211 00
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHH
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVT 335 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~ 335 (545)
......|..+|..++..... .+++++++||+.++|+.......+.....
T Consensus 127 ----------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~i~r~~~~~g~~~~~~~~~~~~~~------- 175 (312)
T d1qyda_ 127 ----------------------LQPGSITFIDKRKVRRAIEA--ASIPYTYVSSNMFAGYFAGSLAQLDGHMM------- 175 (312)
T ss_dssp ----------------------CSSTTHHHHHHHHHHHHHHH--TTCCBCEEECCEEHHHHTTTSSCTTCCSS-------
T ss_pred ----------------------cchhhhhhHHHHHHHHhhcc--cccceEEeccceeecCCccchhhHHHHhh-------
Confidence 01125677888888877665 58999999999999976544333222111
Q ss_pred HHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC-EEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 336 GAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP-IYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 336 ~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~-vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
..+....++++++..+++|+++|+|++++.++.++.. .++ +|+++++ +.+|++|+++.+.+..|+.
T Consensus 176 --~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-------~~~~~~~~~~~--~~~s~~e~~~~~~~~~g~~ 242 (312)
T d1qyda_ 176 --PPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT-------LNKTMYIRPPM--NILSQKEVIQIWERLSEQN 242 (312)
T ss_dssp --CCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG-------SSSEEECCCGG--GEEEHHHHHHHHHHHHTCC
T ss_pred --hcccccccccccccccceeeHHHHHHHHHHHhcCccc-------cCceEEEeCCC--cCCCHHHHHHHHHHHHCCC
Confidence 1233344678889999999999999999999987765 345 4666666 7899999999999998774
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=3.4e-22 Score=195.21 Aligned_cols=243 Identities=19% Similarity=0.179 Sum_probs=153.0
Q ss_pred EEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH-HH
Q psy16252 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD-KR 178 (545)
Q Consensus 100 VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~-~~ 178 (545)
|||||||||||++|+++|+++|+ ..|+++.+-..+.. ..++... ++.+. ++.++ ..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~--~~V~~~d~~~~~~~-~~~~~~~-----------------~~~~~---~~~~~~~~ 58 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGI--TDILVVDNLKDGTK-FVNLVDL-----------------NIADY---MDKEDFLI 58 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTC--CCEEEEECCSSGGG-GHHHHTS-----------------CCSEE---EEHHHHHH
T ss_pred EEEecCccHHHHHHHHHHHhCCC--CeEEEEECCCCcch-hhccccc-----------------chhhh---ccchHHHH
Confidence 89999999999999999999974 25677654332211 1111100 11100 01122 22
Q ss_pred HH-----hcCccEEEEccccccch-HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCC-c-ccccccCCC
Q psy16252 179 LV-----TSKVNLVFHCAATLRFD-EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK-N-IEEIIYKAH 250 (545)
Q Consensus 179 ~l-----~~~vd~Vih~Aa~~~~~-~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~-~-i~E~~~~~~ 250 (545)
.. ...+++|+|+||..... .+.......|+.++.+++++++.. +++ +++.||..++.... . .+|....
T Consensus 59 ~~~~~~~~~~~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~i~-~v~~ss~~~~~~~~~~~~~~~~~~-- 134 (307)
T d1eq2a_ 59 QIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EIP-FLYASSAATYGGRTSDFIESREYE-- 134 (307)
T ss_dssp HHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TCC-EEEEEEGGGGTTCCSCBCSSGGGC--
T ss_pred HHhhhhcccchhhhhhhcccccccccccccccccccccccccccccccc-ccc-cccccccccccccccccccccccc--
Confidence 22 24679999999875432 344667788999999999999986 665 66666666554432 2 2222111
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--cCCCEEEEccceeeccCCCCCCCCccCcc
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--QFFPVCIFRPSIVISTWKEPIPGWIDNLY 328 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~ 328 (545)
...+.|+.+|..+|.++..+. .+++++++||+.|||+...... ... .
T Consensus 135 ----------------------------~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~-~~~--~ 183 (307)
T d1eq2a_ 135 ----------------------------KPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKG-SMA--S 183 (307)
T ss_dssp ----------------------------CCSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGG-GGS--C
T ss_pred ----------------------------ccccccccccchhhhhccccccccccccccccceeEeeccccccc-ccc--c
Confidence 222789999999999999886 7899999999999998654211 110 1
Q ss_pred chHHHHHHHhcCceeE-EecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHH
Q psy16252 329 GPTGLVTGAQAGVVRT-FLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLK 407 (545)
Q Consensus 329 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~ 407 (545)
....++..+..|.... +.+++...++++|++|++.++..++.+.. .++||++++ ++.++.|+++.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~---------~~~~~~~~~--~~~si~~i~~~i~~ 252 (307)
T d1eq2a_ 184 VAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV---------SGIFNLGTG--RAESFQAVADATLA 252 (307)
T ss_dssp HHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC---------CEEEEESCS--CCBCHHHHHHHC--
T ss_pred cccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhcc---------ccccccccc--cchhHHHHHHHHHH
Confidence 1123444555554333 34677888999999999999998887654 479999998 89999999999887
Q ss_pred hhcc
Q psy16252 408 EGVK 411 (545)
Q Consensus 408 ~~~~ 411 (545)
..++
T Consensus 253 ~~~~ 256 (307)
T d1eq2a_ 253 YHKK 256 (307)
T ss_dssp ----
T ss_pred hcCC
Confidence 7554
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.86 E-value=1.6e-21 Score=183.85 Aligned_cols=228 Identities=14% Similarity=0.069 Sum_probs=156.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
-++|||||||||||+++++.|+++|+++ .|+++.|++.. ... + ....+++. |+. +.+
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v-~v~~~~R~~~~------~~~--------~-~~~~~~~~~d~~------~~~ 60 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQG------KEK--------I-GGEADVFIGDIT------DAD 60 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTC-EEEEEESCHHH------HHH--------T-TCCTTEEECCTT------SHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcE-EEEEEcCCHHH------HHh--------c-cCCcEEEEeeec------ccc
Confidence 3799999999999999999999998765 68888886421 110 0 11333444 776 778
Q ss_pred HHHHHhcCccEEEEccccccch----------------HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCC
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFD----------------EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~----------------~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~ 239 (545)
.+.++++++|+|||+|+..... ........+|+.|+.+++..+... ..+.+.+.|+.......
T Consensus 61 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~ 139 (252)
T d2q46a1 61 SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSMGGTNPD 139 (252)
T ss_dssp HHHHHHTTCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEEETTTTCTT
T ss_pred ccccccccceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc-cccccccccccccCCCC
Confidence 8999999999999999864211 122345688999999999999886 77889999887665432
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCC
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEP 319 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~ 319 (545)
.+.. ......|...+...+.+..+ .+++++++||+.|+|+....
T Consensus 140 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~ilRp~~v~g~~~~~ 183 (252)
T d2q46a1 140 HPLN----------------------------------KLGNGNILVWKRKAEQYLAD--SGTPYTIIRAGGLLDKEGGV 183 (252)
T ss_dssp CGGG----------------------------------GGGGCCHHHHHHHHHHHHHH--SSSCEEEEEECEEECSCTTS
T ss_pred cccc----------------------------------cccccchhhhhhhhhhhhhc--ccccceeecceEEECCCcch
Confidence 2100 00114567777777766655 68999999999999985432
Q ss_pred CCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCC-CCcccH
Q psy16252 320 IPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSK-DNPLTW 398 (545)
Q Consensus 320 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~-~~~~t~ 398 (545)
...... .. ........++||++|||++++.++.++.. .+++||++++. ....++
T Consensus 184 ~~~~~~---------------~~---~~~~~~~~~~i~~~Dva~a~~~~l~~~~~-------~g~~~~i~~~~~~~~~~~ 238 (252)
T d2q46a1 184 RELLVG---------------KD---DELLQTDTKTVPRADVAEVCIQALLFEEA-------KNKAFDLGSKPEGTSTPT 238 (252)
T ss_dssp SCEEEE---------------ST---TGGGGSSCCEEEHHHHHHHHHHHTTCGGG-------TTEEEEEEECCTTTSCCC
T ss_pred hhhhhc---------------cC---cccccCCCCeEEHHHHHHHHHHHhCCccc-------cCcEEEEeeCCCCCChhH
Confidence 211000 00 00123345789999999999999988765 57899998752 134566
Q ss_pred HHHHHHHHHh
Q psy16252 399 GEFITKSLKE 408 (545)
Q Consensus 399 ~el~~~l~~~ 408 (545)
.++.+.+.+.
T Consensus 239 ~~~~~lf~~i 248 (252)
T d2q46a1 239 KDFKALFSQV 248 (252)
T ss_dssp CCHHHHHTTC
T ss_pred HHHHHHHHHH
Confidence 7776655544
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.76 E-value=4.9e-18 Score=168.97 Aligned_cols=232 Identities=14% Similarity=0.009 Sum_probs=159.8
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|+|||||||+|++|+++|++.|+ +|++++|+.++... ..+. ...+++++. |+.+ ..+
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~---~V~~l~R~~~~~~~-~~~~----------~~~~v~~~~gD~~d-----~~~ 63 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGH---HVRAQVHSLKGLIA-EELQ----------AIPNVTLFQGPLLN-----NVP 63 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCSCSHHH-HHHH----------TSTTEEEEESCCTT-----CHH
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCC---eEEEEECCcchhhh-hhhc----------ccCCCEEEEeeCCC-----cHH
Confidence 58999999999999999999999987 58899998654211 1111 112334444 7763 345
Q ss_pred HHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccCCCcccccccCCCCCHHH
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSE 255 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~ 255 (545)
.+..++.++++++++..... ..|+..+.+++++|.++ +++++++.||.........
T Consensus 64 ~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~aa~~a-gv~~~v~~Ss~~~~~~~~~-------------- 119 (350)
T d1xgka_ 64 LMDTLFEGAHLAFINTTSQA---------GDEIAIGKDLADAAKRA-GTIQHYIYSSMPDHSLYGP-------------- 119 (350)
T ss_dssp HHHHHHTTCSEEEECCCSTT---------SCHHHHHHHHHHHHHHH-SCCSEEEEEECCCGGGTSS--------------
T ss_pred HHHHHhcCCceEEeeccccc---------chhhhhhhHHHHHHHHh-CCCceEEEeeccccccCCc--------------
Confidence 67888899999988765422 24567788999999998 7888888888754432110
Q ss_pred HHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEccceeeccCCCCCCCCccCccchHHHHH
Q psy16252 256 LLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVT 335 (545)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~ 335 (545)
.....|..+|...|..+.+ .+++++++||+.+++....+........
T Consensus 120 -----------------------~~~~~~~~~k~~~~~~~~~--~~~~~~~vr~~~~~~~~~~~~~~~~~~~-------- 166 (350)
T d1xgka_ 120 -----------------------WPAVPMWAPKFTVENYVRQ--LGLPSTFVYAGIYNNNFTSLPYPLFQME-------- 166 (350)
T ss_dssp -----------------------CCCCTTTHHHHHHHHHHHT--SSSCEEEEEECEEGGGCBSSSCSSCBEE--------
T ss_pred -----------------------ccchhhhhhHHHHHHHHHh--hccCceeeeeceeecccccccccccccc--------
Confidence 1125678899999988877 4689999999998876432211111000
Q ss_pred HHhcCcee-EEecCCCCcccceeh-HHHHHHHHhcccccccccCCCCCCCCEEEeecCCCCcccHHHHHHHHHHhhccc
Q psy16252 336 GAQAGVVR-TFLVDPDVKADIVPA-DLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKI 412 (545)
Q Consensus 336 ~~~~g~~~-~~~~~~~~~~~~v~v-ddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~~~t~~el~~~l~~~~~~~ 412 (545)
....|... ..+.+++..+.++++ +|+++++..++..... ...+++|+++++ .+|+.|+++.+.+..|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~-----~~~G~~~~~~g~---~~T~~eia~~l~~~~G~~ 237 (350)
T d1xgka_ 167 LMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQ-----KWNGHRIALTFE---TLSPVQVCAAFSRALNRR 237 (350)
T ss_dssp ECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHH-----HHTTCEEEECSE---EECHHHHHHHHHHHHTSC
T ss_pred ccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChh-----hcCCeEEEEeCC---cCCHHHHHHHHHHHHCCc
Confidence 01112222 234567788888876 8999999988865321 014789999874 699999999999999874
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=1e-14 Score=136.51 Aligned_cols=218 Identities=12% Similarity=0.066 Sum_probs=142.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||++|||||++.||+++++.|++.|. +|++..|++.. .+..+. ....++. |++ +
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~---~V~~~~~~~~~---~~~~~~-----------~~~~~~~~Dv~------~ 59 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGA---LVALCDLRPEG---KEVAEA-----------IGGAFFQVDLE------D 59 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTTH---HHHHHH-----------HTCEEEECCTT------C
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHH---HHHHHH-----------cCCeEEEEeCC------C
Confidence 6799999999999999999999999975 68888887431 111111 1223344 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++.+++++ ++|++|||||.... .+.++..+++|+.|+.++.+++... .+-.++|++||..+.
T Consensus 60 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~ 139 (248)
T d2d1ya1 60 ERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL 139 (248)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccc
Confidence 556555543 68999999997532 3567889999999999999887642 234689999999765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+..+ .|+++..+.||.
T Consensus 140 ~~~---------------------------------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~ 180 (248)
T d2d1ya1 140 FAE---------------------------------------QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGA 180 (248)
T ss_dssp SBC---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred ccc---------------------------------------cccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCC
Confidence 321 112679999999998887765 689999999998
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|-.+..... +. ....+........ +....--+...+|+|++++.++..... .-.++++++.++
T Consensus 181 v~T~~~~~~--~~-~~~~~~~~~~~~~---------~~~pl~R~~~pedia~~v~fL~S~~s~-----~itG~~i~vDGG 243 (248)
T d2d1ya1 181 IATEAVLEA--IA-LSPDPERTRRDWE---------DLHALRRLGKPEEVAEAVLFLASEKAS-----FITGAILPVDGG 243 (248)
T ss_dssp BCCHHHHHH--HC---------CHHHH---------TTSTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred CCCchHHHH--hh-cCCCHHHHHHHHH---------hcCCCCCCcCHHHHHHHHHHHhCchhc-----CCCCcEEEcCcC
Confidence 854310000 00 0000000000000 001112256789999999988754332 235788888776
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.60 E-value=3.5e-14 Score=132.31 Aligned_cols=210 Identities=12% Similarity=0.066 Sum_probs=144.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|++.|. +|++..|++ ++++....+ +. ....++. |++ +
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~---~V~~~~r~~------~~~~~~~~~----~~-~~~~~~~~Dv~------~ 63 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGA---KVVFGDILD------EEGKAMAAE----LA-DAARYVHLDVT------Q 63 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----TG-GGEEEEECCTT------C
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----hh-CcceEEEeecC------C
Confidence 5789999999999999999999999975 688888863 233332221 11 1222333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
+++++++++ .+|++|||||.... .+.++..+++|+.|+..+.+.+... .+-.++|++||....
T Consensus 64 ~~~v~~~~~~~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~ 143 (244)
T d1nffa_ 64 PAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGL 143 (244)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccc
Confidence 566655543 68999999997532 3668889999999999998866431 234689999999765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... ....|+.||+..+.+.+..+ .|+++..+-||.
T Consensus 144 ~~~~---------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~ 184 (244)
T d1nffa_ 144 AGTV---------------------------------------ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGL 184 (244)
T ss_dssp SCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC
T ss_pred cccc---------------------------------------cccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCC
Confidence 3211 11579999999999988765 789999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|-.+..+..+. . .. ....--+...+|+|++++.++..... ...++++.+.++
T Consensus 185 i~T~~~~~~~~----~--------------~~-----~~pl~R~~~p~diA~~v~fL~s~~s~-----~itG~~i~vDGG 236 (244)
T d1nffa_ 185 VKTPMTDWVPE----D--------------IF-----QTALGRAAEPVEVSNLVVYLASDESS-----YSTGAEFVVDGG 236 (244)
T ss_dssp BCSGGGTTSCT----T--------------CS-----CCSSSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred ccChhHhhhhH----H--------------HH-----hccccCCCCHHHHHHHHHHHhChhhC-----CCcCCEEEECCC
Confidence 86653221110 0 00 01112267889999999988754332 234788888765
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=1.7e-14 Score=134.11 Aligned_cols=207 Identities=12% Similarity=0.109 Sum_probs=140.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||++++++|++.|. +|++..|+..... ....+. |++ +
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~Ga---~V~~~~r~~~~~~-------------------~~~~~~~Dv~------~ 56 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADGH---KVAVTHRGSGAPK-------------------GLFGVEVDVT------D 56 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSSCCCT-------------------TSEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCcchhc-------------------CceEEEEecC------C
Confidence 6789999999999999999999999975 7888888765422 111122 887 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
+++++++++ .+|++|||||... ..+.++..+++|+.++..+.+.+... .+-.++|++||.++.
T Consensus 57 ~~~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~ 136 (237)
T d1uzma1 57 SDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGL 136 (237)
T ss_dssp HHHHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-
T ss_pred HHHHHHHHHHHHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhc
Confidence 555555543 6899999999753 23667889999999998888765431 245689999998765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+..+ .|+++..+.||.
T Consensus 137 ~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~ 177 (237)
T d1uzma1 137 WGI---------------------------------------GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGY 177 (237)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred cCC---------------------------------------cccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCc
Confidence 321 112679999999988887765 789999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|..+.... + .......... .. ..--+...+|||++++.++..... --.|+++.+.++
T Consensus 178 v~T~~~~~-------~--~~~~~~~~~~-~~--------pl~R~~~pedvA~~v~fL~S~~s~-----~itG~~i~vdGG 234 (237)
T d1uzma1 178 IDTDMTRA-------L--DERIQQGALQ-FI--------PAKRVGTPAEVAGVVSFLASEDAS-----YISGAVIPVDGG 234 (237)
T ss_dssp BCCHHHHH-------S--CHHHHHHHGG-GC--------TTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred CCChhhhc-------c--CHHHHHHHHh-cC--------CCCCCcCHHHHHHHHHHHhCchhc-----CCcCCeEEECCC
Confidence 86542110 0 0111111111 11 111256789999999988754332 224788887765
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.59 E-value=6.3e-14 Score=131.42 Aligned_cols=214 Identities=10% Similarity=0.031 Sum_probs=143.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. +++.+.... +. ....++. |++ +
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~------~~~~~~~~~----~~-~~~~~~~~Dv~------~ 62 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGA---RVVLADVLD------EEGAATARE----LG-DAARYQHLDVT------I 62 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHT----TG-GGEEEEECCTT------C
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----hC-CceEEEEcccC------C
Confidence 5799999999999999999999999975 688888863 233332221 11 1222333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
+++++++++ .+|++|||||.... .+.++..+++|+.|+..+++.+... .+-.++|++||.+..
T Consensus 63 ~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~ 142 (254)
T d1hdca_ 63 EEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGL 142 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhc
Confidence 666666553 68999999997532 3567889999999999998877541 245799999999765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+..+ .++++..+-||.
T Consensus 143 ~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~ 183 (254)
T d1hdca_ 143 MGL---------------------------------------ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGM 183 (254)
T ss_dssp SCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred ccc---------------------------------------cchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCc
Confidence 321 112689999999998888765 689999999998
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCccc-c-eehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKAD-I-VPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~-v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|-.+ +............ .....+. + ...+|||++++.++..... .-.++++.+.
T Consensus 184 v~T~-----------------~~~~~~~~~~~~~--~~~~pl~R~g~~PedvA~~v~fL~S~~a~-----~itG~~i~vD 239 (254)
T d1hdca_ 184 TYTP-----------------MTAETGIRQGEGN--YPNTPMGRVGNEPGEIAGAVVKLLSDTSS-----YVTGAELAVD 239 (254)
T ss_dssp BCCH-----------------HHHHHTCCCSTTS--CTTSTTSSCB-CHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred ccCc-----------------cchhcCHHHHHHH--HhCCCCCCCCCCHHHHHHHHHHHhchhhC-----CCCCceEEeC
Confidence 8543 1111111000000 0011111 1 2469999999988754332 2357899988
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 240 GG 241 (254)
T d1hdca_ 240 GG 241 (254)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.59 E-value=3.8e-14 Score=132.70 Aligned_cols=218 Identities=12% Similarity=0.036 Sum_probs=140.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|++.|. +|++..|.+.. ........ . ..+...+. |++ +
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga---~V~~~~~~~~~-----~~~~~~~~----~-g~~~~~~~~Dvs------~ 63 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEGA---DIAIADLVPAP-----EAEAAIRN----L-GRRVLTVKCDVS------Q 63 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCH-----HHHHHHHH----T-TCCEEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCchH-----HHHHHHHH----c-CCcEEEEEeeCC------C
Confidence 5789999999999999999999999975 67777876431 11111111 1 01222333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
+++++.+++ ++|++|||||.... .+.++..+++|+.|+..+.+++... .+-.++|++||.++.
T Consensus 64 ~~~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~ 143 (247)
T d2ew8a1 64 PGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYW 143 (247)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhc
Confidence 666665543 78999999997532 3678889999999999998876541 244689999999765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+..+ .|+++..+.||.
T Consensus 144 ~~~---------------------------------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~ 184 (247)
T d2ew8a1 144 LKI---------------------------------------EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSL 184 (247)
T ss_dssp SCC---------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC
T ss_pred ccC---------------------------------------cccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCC
Confidence 321 112679999999988887765 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|-.+...... . ...... ........--+...+|||++++.++..... .-.|++..+.++
T Consensus 185 i~T~~~~~~~------~--~~~~~~--------~~~~~~~l~r~~~pedvA~~v~fL~S~~s~-----~itG~~i~vDGG 243 (247)
T d2ew8a1 185 VRTATTEASA------L--SAMFDV--------LPNMLQAIPRLQVPLDLTGAAAFLASDDAS-----FITGQTLAVDGG 243 (247)
T ss_dssp C----------------------------------CTTSSSCSCCCTHHHHHHHHHHTSGGGT-----TCCSCEEEESSS
T ss_pred CCCccccccc------c--chhHHH--------HHHHhccCCCCCCHHHHHHHHHHHhCchhc-----CCcCCeEEECCC
Confidence 8654221100 0 000000 000001111255689999999988754332 224788887765
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.59 E-value=8.5e-15 Score=137.72 Aligned_cols=218 Identities=12% Similarity=0.113 Sum_probs=142.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+||||||++.||..++++|++.|. +|+++.|..... +.+.+.... ....+..++. |++. +
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~---~vii~~r~~~~~---~~~~~~~~~----~~~~~~~~~~~d~~~-----~ 67 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNL---KNFVILDRVENP---TALAELKAI----NPKVNITFHTYDVTV-----P 67 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCC---SEEEEEESSCCH---HHHHHHHHH----CTTSEEEEEECCTTS-----C
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEECCcccH---HHHHHHHhh----CCCCCEEEEEeecCC-----C
Confidence 5689999999999999999999999975 577777775432 222221110 0111222333 7763 2
Q ss_pred HHHHHHHh-------cCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc------cCCceEEEEeccccccCCC
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC------KNLKMFTYVSTAFSNSYRK 240 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~------~~~~~~v~vSS~~v~~~~~ 240 (545)
.+++++++ ..+|++|||||... .+.++..+++|+.|+.++.+++... +...++|++||..+....
T Consensus 68 ~~~~~~~~~~~~~~~g~iDilvnnAG~~~-~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~- 145 (254)
T d1sbya1 68 VAESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI- 145 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEeCCCCCC-HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCC-
Confidence 23333333 47899999999765 5668899999999999998877652 123679999998775321
Q ss_pred cccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeecc
Q psy16252 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIST 315 (545)
Q Consensus 241 ~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~ 315 (545)
.....|+.||+....+.+.++ .++++..+.||.|..+
T Consensus 146 --------------------------------------~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~ 187 (254)
T d1sbya1 146 --------------------------------------HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTP 187 (254)
T ss_dssp --------------------------------------TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESH
T ss_pred --------------------------------------CCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCc
Confidence 112579999999988887765 6899999999999765
Q ss_pred CCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.......+.+.. ..+..... .....+.++||++++.++..... +.++.+.++
T Consensus 188 ~~~~~~~~~~~~----~~~~~~~~------------~~~~~~~e~va~~~~~~~~~~~t--------G~vi~vdgG 239 (254)
T d1sbya1 188 LVHTFNSWLDVE----PRVAELLL------------SHPTQTSEQCGQNFVKAIEANKN--------GAIWKLDLG 239 (254)
T ss_dssp HHHSCCCGGGSC----TTHHHHHT------------TSCCEEHHHHHHHHHHHHHHCCT--------TCEEEEETT
T ss_pred cccccccchhHH----HHHHhccc------------cCCCCCHHHHHHHHHHhhhCCCC--------CCEEEECCC
Confidence 211111111100 11111111 12345899999999888765444 788888776
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.58 E-value=1.8e-13 Score=127.53 Aligned_cols=212 Identities=13% Similarity=0.072 Sum_probs=143.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. +++++..+. + +...+. |++ +
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~---~V~~~~r~~------~~l~~~~~~----~---~~~~~~~Dv~------~ 60 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGA---RLVACDIEE------GPLREAAEA----V---GAHPVVMDVA------D 60 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHT----T---TCEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----c---CCeEEEEecC------C
Confidence 5689999999999999999999999975 688888863 333332221 1 223344 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
+++++++++ .+|++|||||.... .+.++..+++|+.|+..+.+.+... .+-..++.+||.+..
T Consensus 61 ~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~ 140 (242)
T d1ulsa_ 61 PASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYL 140 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecccccc
Confidence 566665543 68999999997531 3567889999999999999887652 234567777775433
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
+.. ....|+.||+..+.+.+..+ .|+++..+.||.
T Consensus 141 ~~~----------------------------------------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~ 180 (242)
T d1ulsa_ 141 GNL----------------------------------------GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGF 180 (242)
T ss_dssp CCT----------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred CCC----------------------------------------CCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCc
Confidence 221 12679999999999888765 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|-.+.... . +........... ..--+...+|+|++++.++..... .-.|+++.+.++
T Consensus 181 v~T~~~~~-------~--~~~~~~~~~~~~---------pl~R~~~pedia~~v~fL~S~~s~-----~itG~~i~vDGG 237 (242)
T d1ulsa_ 181 IETRMTAK-------V--PEKVREKAIAAT---------PLGRAGKPLEVAYAALFLLSDESS-----FITGQVLFVDGG 237 (242)
T ss_dssp BCCTTTSS-------S--CHHHHHHHHHTC---------TTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred ccChhhhc-------C--CHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhchhhC-----CCCCcEEEECCC
Confidence 96543221 1 112222222111 011255789999999988754332 224788888765
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.57 E-value=4.7e-14 Score=133.25 Aligned_cols=232 Identities=13% Similarity=0.073 Sum_probs=142.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||++|||||++.||+++++.|++.|. +|++..|+.. +++++....+... ...+..++. |++ +
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga---~V~~~~r~~~-----~~~~~~~~~~~~~-~g~~~~~~~~Dv~------~ 66 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA---DIVLNGFGDA-----AEIEKVRAGLAAQ-HGVKVLYDGADLS------K 66 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEECCSCH-----HHHHHHHHHHHHH-HTSCEEEECCCTT------S
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCcH-----HHHHHHHHHHHHh-cCCcEEEEECCCC------C
Confidence 5689999999999999999999999975 6888777642 2222221111000 011222334 888 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
+++++++++ ++|++|||||... ..+.++..+++|+.|+..+++.+... .+-.++|++||.++.
T Consensus 67 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~ 146 (260)
T d1x1ta1 67 GEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGL 146 (260)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccce
Confidence 666666654 6899999999753 23667889999999999888776542 234689999999765
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+..+ .|+++..+.||.
T Consensus 147 ~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~ 187 (260)
T d1x1ta1 147 VAS---------------------------------------ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGW 187 (260)
T ss_dssp SCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECC
T ss_pred ecc---------------------------------------CCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCC
Confidence 321 112579999999998887765 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|-.+...... .........-. ..............--+...+|+|++++.++..... .-.|+++++.++
T Consensus 188 i~T~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~-----~itG~~i~vDGG 256 (260)
T d1x1ta1 188 VRTPLVEKQI---SALAEKNGVDQ---ETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAA-----QITGTTVSVDGG 256 (260)
T ss_dssp BCC------------------------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred CCChhhhhhh---hhhhhhcCCCh---HHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhC-----CCcCCEEEECcc
Confidence 8654211100 00000000000 000000000000111256789999999987754332 235778887765
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=4.3e-14 Score=131.92 Aligned_cols=215 Identities=17% Similarity=0.155 Sum_probs=144.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|++.|. +|++..|++ +++++..+. +. .+...+. |++ +
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~---~Vv~~~r~~------~~l~~~~~~----~~-~~~~~~~~Dv~------~ 61 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGA---KVIGTATSE------NGAQAISDY----LG-ANGKGLMLNVT------D 61 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSH------HHHHHHHHH----HG-GGEEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCH------HHHHHHHHH----hC-CCCcEEEEEec------C
Confidence 4689999999999999999999999976 677788863 233332211 11 1122233 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
.++.+++++ .+|++||+|+.... .+.++..+++|+.|+..+++.+... .+-.++|++||..+.
T Consensus 62 ~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~ 141 (243)
T d1q7ba_ 62 PASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGT 141 (243)
T ss_dssp HHHHHHHHHHHHHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HHHhhhhhhhhhcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhc
Confidence 556655543 68999999987532 3667889999999999998877542 234689999998764
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+..+ .|+++..+.||.
T Consensus 142 ~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~ 182 (243)
T d1q7ba_ 142 MGN---------------------------------------GGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGF 182 (243)
T ss_dssp HCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred CCC---------------------------------------CCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecce
Confidence 321 112689999999999988765 789999999998
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|-.+... ... .......... . ..--+...+|+|+++..++..... ...|+++++.++
T Consensus 183 i~T~~~~-------~~~--~~~~~~~~~~-~--------pl~R~~~pedvA~~v~fL~S~~s~-----~itGq~i~vdGG 239 (243)
T d1q7ba_ 183 IETDMTR-------ALS--DDQRAGILAQ-V--------PAGRLGGAQEIANAVAFLASDEAA-----YITGETLHVNGG 239 (243)
T ss_dssp BCCHHHH-------TSC--HHHHHHHHTT-C--------TTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred Eechhhh-------hhh--hhHHHHHHhc-C--------CCCCCCCHHHHHHHHHHHhCchhc-----CCcCCeEEECCC
Confidence 8554211 111 1111122111 1 112356789999999888754332 234788888765
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.57 E-value=8e-14 Score=131.33 Aligned_cols=217 Identities=14% Similarity=0.121 Sum_probs=132.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lg 171 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. +++++.... +.....+ .+. |++
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga---~V~~~~r~~------~~l~~~~~~----~~~~~~~~~~~~~Dv~----- 67 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA---VIHTCARNE------YELNECLSK----WQKKGFQVTGSVCDAS----- 67 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----HHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----HHhcCCceEEEeccCC-----
Confidence 4799999999999999999999999975 688888863 333332222 2222222 223 887
Q ss_pred CCHHHHHHHh--------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVT--------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~--------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
++++.+.++ ..+|++|||||.... .+.++..+++|+.|+..+++.+... .+-.++|++||.
T Consensus 68 -~~~~v~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~ 146 (259)
T d1xq1a_ 68 -LRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSI 146 (259)
T ss_dssp -SHHHHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--
T ss_pred -CHHHHHHHHHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccc
Confidence 444544433 248999999997532 3667889999999999998876541 244689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
...... .....|+.||+..+.+.+..+ .|+++..+-
T Consensus 147 ~~~~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~ 187 (259)
T d1xq1a_ 147 AGVVSA---------------------------------------SVGSIYSATKGALNQLARNLACEWASDGIRANAVA 187 (259)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred cccccc---------------------------------------cccccccccccchhhhhHHHHHHhcccCeEEEEec
Confidence 764321 112679999999998887765 789999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|-.+.... ... ........ .....--+...+|||++++.++..... .-.|.+..+
T Consensus 188 PG~i~T~~~~~-------~~~-~~~~~~~~---------~~~pl~R~~~pedvA~~v~fL~S~~s~-----~iTG~~i~v 245 (259)
T d1xq1a_ 188 PAVIATPLAEA-------VYD-DEFKKVVI---------SRKPLGRFGEPEEVSSLVAFLCMPAAS-----YITGQTICV 245 (259)
T ss_dssp CCSCC------------------------------------------CCGGGGHHHHHHHTSGGGT-----TCCSCEEEC
T ss_pred cCcccCHHhhh-------hch-HHHHHHHH---------hCCCCCCCcCHHHHHHHHHHHhCchhc-----CCcCcEEEe
Confidence 99986542111 000 00000000 000111245688999999887754332 224677777
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 246 DGG 248 (259)
T d1xq1a_ 246 DGG 248 (259)
T ss_dssp CCC
T ss_pred CCC
Confidence 665
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.5e-13 Score=128.22 Aligned_cols=216 Identities=15% Similarity=0.153 Sum_probs=147.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||++|||||++.||+++++.|++.|. +|++..|+. +++++...+ + .....+. |++ +
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~---~V~~~~r~~------~~l~~~~~~----~--~~~~~~~~Dv~------d 63 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA---RVVAVSRTQ------ADLDSLVRE----C--PGIEPVCVDLG------D 63 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----S--TTCEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCH------HHHHHHHHh----c--CCCeEEEEeCC------C
Confidence 6799999999999999999999999975 688888863 333332221 1 1222333 887 5
Q ss_pred HHHHHHHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH-c---cCCceEEEEeccccccCC
Q psy16252 174 PDDKRLVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ-C---KNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 174 ~~~~~~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~-~---~~~~~~v~vSS~~v~~~~ 239 (545)
.+.++++++ ++|++||+|+.... .+.++..+++|+.++..+.+.+.. + .+-.++|++||.+.....
T Consensus 64 ~~~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~ 143 (244)
T d1pr9a_ 64 WEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV 143 (244)
T ss_dssp HHHHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccc
Confidence 667777765 68999999997532 366788999999999988886654 1 244689999999765332
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeec
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIS 314 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g 314 (545)
.....|+.||+..+.+.+..+ .++++..+.||.|..
T Consensus 144 ---------------------------------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T 184 (244)
T d1pr9a_ 144 ---------------------------------------TNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMT 184 (244)
T ss_dssp ---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCS
T ss_pred ---------------------------------------cchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcC
Confidence 112579999999999988775 689999999999866
Q ss_pred cCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 315 TWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+.... .............. .+ .--+...+|||++++.++..... --.++++.+.++
T Consensus 185 ~~~~~-------~~~~~~~~~~~~~~-~p--------l~R~~~peevA~~v~fL~S~~a~-----~itG~~i~vDGG 240 (244)
T d1pr9a_ 185 SMGQA-------TWSDPHKAKTMLNR-IP--------LGKFAEVEHVVNAILFLLSDRSG-----MTTGSTLPVEGG 240 (244)
T ss_dssp HHHHT-------TSCSHHHHHHHHTT-CT--------TCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred hHHhh-------hccChHHHHHHHhc-CC--------CCCCcCHHHHHHHHHHHhCchhC-----CcCCcEEEECcc
Confidence 52211 11111122222211 11 12366789999999887754332 234778887765
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=3.8e-14 Score=133.27 Aligned_cols=217 Identities=13% Similarity=0.106 Sum_probs=145.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lg 171 (545)
++||+++||||++.||++++++|++.|. +|++..|+. +++++... .++....+ .+. |++
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~------~~~~~~~~----~l~~~g~~~~~~~~Dvs----- 70 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINA------DAANHVVD----EIQQLGGQAFACRCDIT----- 70 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESCH------HHHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HHHHcCCcEEEEEccCC-----
Confidence 5799999999999999999999999875 678888853 23333222 22222222 333 998
Q ss_pred CCHHHHHHHh-------cCccEEEEcccccc------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 172 LSPDDKRLVT-------SKVNLVFHCAATLR------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 172 l~~~~~~~l~-------~~vd~Vih~Aa~~~------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
++++.+.++ ..+|++|||||... ..+.++..+++|+.|+..+.+.+... .+-.++|++||.++
T Consensus 71 -~~~~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~ 149 (255)
T d1fmca_ 71 -SEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAA 149 (255)
T ss_dssp -CHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred -CHHHHHHHHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccch
Confidence 555655554 37899999999753 13667889999999999988866541 13457899999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..+.+.+..+ .|+++..+-||
T Consensus 150 ~~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG 190 (255)
T d1fmca_ 150 ENKN---------------------------------------INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPG 190 (255)
T ss_dssp TCCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEC
T ss_pred hccc---------------------------------------cccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeC
Confidence 5322 112689999999999988765 68999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|-.+... .... ........... + .--+...+|||++++.++..... --.|+++.+.+
T Consensus 191 ~i~T~~~~-------~~~~-~e~~~~~~~~~-p--------l~R~g~pedvA~~v~fL~S~~s~-----~itG~~i~vDG 248 (255)
T d1fmca_ 191 AILTDALK-------SVIT-PEIEQKMLQHT-P--------IRRLGQPQDIANAALFLCSPAAS-----WVSGQILTVSG 248 (255)
T ss_dssp SBCSHHHH-------TTCC-HHHHHHHHHTC-S--------SCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEEST
T ss_pred cCcChHhh-------ccCC-HHHHHHHHhcC-C--------CCCCcCHHHHHHHHHHHhCchhc-----CCcCCEEEECc
Confidence 98654211 1111 12222222211 1 11245679999999988754332 23578888887
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 249 G 249 (255)
T d1fmca_ 249 G 249 (255)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.56 E-value=8.3e-14 Score=131.29 Aligned_cols=219 Identities=12% Similarity=0.059 Sum_probs=144.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lg 171 (545)
++||+++||||++.||++++++|++.|. +|++..|+.. +.++... +.++....+ .+. |++
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~---~Vv~~~r~~~-----~~~~~~~----~~~~~~g~~~~~~~~Dvt----- 67 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKA---KVVVNYRSKE-----DEANSVL----EEIKKVGGEAIAVKGDVT----- 67 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH-----HHHHHHH----HHHHHTTCEEEEEECCTT-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCcH-----HHHHHHH----HHHHhcCCcEEEEEccCC-----
Confidence 6799999999999999999999999975 6888888642 1222211 112222222 233 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~ 233 (545)
++++++++++ ++|++|||||.... .+.++..+++|+.|+..+.+.+.. .+.-..+|++||.
T Consensus 68 -~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~ 146 (261)
T d1geea_ 68 -VESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSV 146 (261)
T ss_dssp -SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccc
Confidence 5566665553 68999999997532 356788999999999988877654 2223458899998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
+..... .....|+.||+..+.+.+..+ .++++..+.
T Consensus 147 ~~~~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~ 187 (261)
T d1geea_ 147 HEKIPW---------------------------------------PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIG 187 (261)
T ss_dssp GGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred hhcccC---------------------------------------ccccccccCCccchhhHHHHHHHhhhhCcEEEEEe
Confidence 764321 112679999999999888775 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|-.+... .............. .. ..--+...+|||++++.++..... ...++++.+
T Consensus 188 PG~v~T~~~~-------~~~~~~~~~~~~~~-~~--------pl~R~~~pediA~~v~fL~S~~s~-----~itG~~i~v 246 (261)
T d1geea_ 188 PGAINTPINA-------EKFADPEQRADVES-MI--------PMGYIGEPEEIAAVAAWLASSEAS-----YVTGITLFA 246 (261)
T ss_dssp ECSBCSGGGH-------HHHHSHHHHHHHHT-TC--------TTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eCcCcCHhHh-------hhcCCHHHHHHHHh-cC--------CCCCCCCHHHHHHHHHHHhCchhc-----CCcCCeEEE
Confidence 9998654210 00000111111111 11 111256789999999988754332 235788888
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 247 DGG 249 (261)
T d1geea_ 247 DGG 249 (261)
T ss_dssp STT
T ss_pred CCC
Confidence 776
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=1.4e-13 Score=129.05 Aligned_cols=222 Identities=12% Similarity=0.063 Sum_probs=144.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. +++.+....+.... ......+. |++ +
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga---~V~i~~r~~------~~~~~~~~~l~~~~-g~~~~~~~~Dv~------~ 66 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC---SVVVASRNL------EEASEAAQKLTEKY-GVETMAFRCDVS------N 66 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHHHHH-CCCEEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHHHHHHh-CCcEEEEEccCC------C
Confidence 4689999999999999999999999975 688888863 22322222111111 01222333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~ 236 (545)
+++++.+++ ++|++|||||... ..+.++..+++|+.|+..+.+.+... .+-.++|++||..+.
T Consensus 67 ~~~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~ 146 (251)
T d1vl8a_ 67 YEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVE 146 (251)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhc
Confidence 566655543 6899999999753 23667889999999999999887652 234589999986542
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... .....|+.||+..+.+.+..+ .|+++..+.||.
T Consensus 147 ~~~~--------------------------------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~ 188 (251)
T d1vl8a_ 147 EVTM--------------------------------------PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGW 188 (251)
T ss_dssp CCCS--------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECC
T ss_pred cccC--------------------------------------ccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCc
Confidence 2110 112579999999999988775 689999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|-.+... ................ | .--+...+|||++++.++..... .-.|+++.+.++
T Consensus 189 i~T~~~~-------~~~~~~~~~~~~~~~~----p-----l~R~~~pedvA~~v~fL~S~~a~-----~itG~~i~vDGG 247 (251)
T d1vl8a_ 189 YRTKMTE-------AVFSDPEKLDYMLKRI----P-----LGRTGVPEDLKGVAVFLASEEAK-----YVTGQIIFVDGG 247 (251)
T ss_dssp BCSTTTH-------HHHTCHHHHHHHHHTC----T-----TSSCBCGGGGHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred ccCHHHH-------hccCCHHHHHHHHhcC----C-----CCCCCCHHHHHHHHHHHhCchhC-----CCcCcEEEeCcC
Confidence 8554211 1111111222222111 0 11245678999999987754332 234788887765
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.56 E-value=6e-14 Score=132.10 Aligned_cols=228 Identities=10% Similarity=0.028 Sum_probs=144.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. ++++.....+-......+...+. |++ +
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~------~~l~~~~~~~~~~~~~~~~~~~~~Dvt------~ 66 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA---KLSLVDVSS------EGLEASKAAVLETAPDAEVLTTVADVS------D 66 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHHHHCTTCCEEEEECCTT------S
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHHHHhhCCCCeEEEEeccCC------C
Confidence 4689999999999999999999999975 688888863 23332222111111111222333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc----c----hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR----F----DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~----~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v 235 (545)
+++++.+++ .+|++|||||... + .+.++..+++|+.|+..+.+++... .+-.++|++||.++
T Consensus 67 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~ 146 (258)
T d1iy8a_ 67 EAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGG 146 (258)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhh
Confidence 666665543 6899999999641 1 3567889999999999999876431 24468999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..+.+.+..+ .++++..+.||
T Consensus 147 ~~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG 187 (258)
T d1iy8a_ 147 IRGI---------------------------------------GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPG 187 (258)
T ss_dssp TSBC---------------------------------------SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEC
T ss_pred ccCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeC
Confidence 4321 112689999999988887765 68999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|..+.......... .............. ...--+...+|+|++++.++..... .-.+++..+.+
T Consensus 188 ~v~T~~~~~~~~~~~-~~~~~~~~~~~~~~---------~pl~R~~~p~dvA~~v~fL~S~~s~-----~itG~~i~VDG 252 (258)
T d1iy8a_ 188 AIWTPMVENSMKQLD-PENPRKAAEEFIQV---------NPSKRYGEAPEIAAVVAFLLSDDAS-----YVNATVVPIDG 252 (258)
T ss_dssp SBCSHHHHHHHHHHC-TTCHHHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHTSGGGT-----TCCSCEEEEST
T ss_pred cccCHHHHHHHhhcC-cccHHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhc-----CCcCceEEcCc
Confidence 985531100000000 00001111111111 1111256789999999988764332 23477888877
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 253 G 253 (258)
T d1iy8a_ 253 G 253 (258)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.55 E-value=3.8e-14 Score=133.49 Aligned_cols=220 Identities=13% Similarity=0.101 Sum_probs=143.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. +++++...+ +. .+...+. |++ +
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~------~~l~~~~~~----~~-~~~~~~~~Dvt------~ 62 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGA---RVAIADINL------EAARATAAE----IG-PAACAIALDVT------D 62 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTE---EEEEEESCH------HHHHHHHHH----HC-TTEEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----hC-CceEEEEeeCC------C
Confidence 5689999999999999999999999975 688888753 233332221 11 1222233 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~~v 235 (545)
+++++++++ .+|++||+||.... .+.++..+++|+.|+..+.+.+.. .++-.++|++||..+
T Consensus 63 ~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~ 142 (256)
T d1k2wa_ 63 QASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAG 142 (256)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhh
Confidence 666666654 68999999997532 366788999999999998876443 123468999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
.... .....|+.||+..+.+.+..+ .|+++..+.||
T Consensus 143 ~~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG 183 (256)
T d1k2wa_ 143 RRGE---------------------------------------ALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPG 183 (256)
T ss_dssp TSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred cccc---------------------------------------ccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecC
Confidence 5321 112689999999999987765 68999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHh--cCcee----EEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQ--AGVVR----TFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP 384 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~--~g~~~----~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~ 384 (545)
.|-.+... .+..... .+... .........--+...+|||++++.++..... .-.|+
T Consensus 184 ~i~T~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~p~evA~~v~fL~S~~a~-----~iTG~ 245 (256)
T d1k2wa_ 184 VVDGEHWD-------------GVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIFLATPEAD-----YIVAQ 245 (256)
T ss_dssp CBCCTTHH-------------HHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCHHHHHHHHHHTTSGGGT-----TCCSC
T ss_pred CCCchhhh-------------hhhhhhhhhccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhC-----CccCc
Confidence 88554210 0100000 00000 0000000011256789999999987754332 23478
Q ss_pred EEEeecC
Q psy16252 385 IYNYVNS 391 (545)
Q Consensus 385 vy~i~~~ 391 (545)
++.+.++
T Consensus 246 ~i~vDGG 252 (256)
T d1k2wa_ 246 TYNVDGG 252 (256)
T ss_dssp EEEESTT
T ss_pred eEEECcc
Confidence 8888776
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.55 E-value=1.6e-13 Score=128.73 Aligned_cols=216 Identities=14% Similarity=0.156 Sum_probs=145.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCC--Cccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS--TSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~--~~~~-Dl~~~~lg 171 (545)
+++|+++||||++.||+++++.|++.|. +|++..|+. +++++... .++.... ..+. |++
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga---~V~~~~r~~------~~l~~~~~----~l~~~g~~~~~~~~Dvt----- 69 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVS---HVICISRTQ------KSCDSVVD----EIKSFGYESSGYAGDVS----- 69 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSS---EEEEEESSH------HHHHHHHH----HHHTTTCCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCH------HHHHHHHH----HHHhcCCcEEEEEccCC-----
Confidence 4689999999999999999999999875 688888863 23333222 2222222 2333 888
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
++++++.+++ .+|++||+|+.... .+.++..+++|+.|+..+.+++... .+-.++|++||.+
T Consensus 70 -~~~~v~~~~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~ 148 (251)
T d2c07a1 70 -KKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIV 148 (251)
T ss_dssp -CHHHHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred -CHHHHHHHHHHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHH
Confidence 5666666554 78999999997532 3678889999999999988876531 2446899999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
+.... .....|+.||+..+.+.+..+ .|+++..+.|
T Consensus 149 ~~~~~---------------------------------------~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~P 189 (251)
T d2c07a1 149 GLTGN---------------------------------------VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAP 189 (251)
T ss_dssp HHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hcCCC---------------------------------------CCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEcc
Confidence 64321 112579999999999998775 6899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|-.+... .. ............ + .--+...+|+|++++.++..... --.|+++.+.
T Consensus 190 G~v~T~~~~-------~~--~~~~~~~~~~~~-p--------l~R~~~pedvA~~v~fL~S~~s~-----~itG~~i~vD 246 (251)
T d2c07a1 190 GFISSDMTD-------KI--SEQIKKNIISNI-P--------AGRMGTPEEVANLACFLSSDKSG-----YINGRVFVID 246 (251)
T ss_dssp CSBCC------------C--CHHHHHHHHTTC-T--------TSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred CCEeccccc-------cc--CHHHHHHHHhcC-C--------CCCCcCHHHHHHHHHHHhCchhC-----CCcCcEEEEC
Confidence 998654321 11 122222222211 1 11256789999999887754432 2247788876
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 247 GG 248 (251)
T d2c07a1 247 GG 248 (251)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.1e-14 Score=137.21 Aligned_cols=231 Identities=12% Similarity=0.078 Sum_probs=144.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
+||++|||||++.||+++++.|++.|. +|++..|+. +++++....+-......+..++. |++ +.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga---~V~i~~r~~------~~~~~~~~~l~~~~~~~~~~~~~~Dv~------~~ 66 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA---KVALVDWNL------EAGVQCKAALHEQFEPQKTLFIQCDVA------DQ 66 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHTTTSCGGGEEEEECCTT------SH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHHHHHhcCCCcEEEEEeecC------CH
Confidence 589999999999999999999999975 688888863 22322221111111111223334 888 55
Q ss_pred HHHHHHhc-------CccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc------cCCceEEEEeccccccCCCc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC------KNLKMFTYVSTAFSNSYRKN 241 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~------~~~~~~v~vSS~~v~~~~~~ 241 (545)
++++.+++ .+|++||+|+... ..+++..+++|+.++.++.+++... +.-.++|++||.++....
T Consensus 67 ~~v~~~~~~~~~~~G~iDilVnnAg~~~-~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~-- 143 (254)
T d2gdza1 67 QQLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV-- 143 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHHHHHHHcCCcCeecccccccc-cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCC--
Confidence 66665553 6899999999865 4567888999999998888877542 112569999999764321
Q ss_pred ccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHH------hc-cCCCEEEEccceeec
Q psy16252 242 IEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCE------EA-QFFPVCIFRPSIVIS 314 (545)
Q Consensus 242 i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~------~~-~~l~~~i~Rp~~i~g 314 (545)
.....|+.||+..+.+.+. +. .++++..+.||.|-.
T Consensus 144 -------------------------------------~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T 186 (254)
T d2gdza1 144 -------------------------------------AQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNT 186 (254)
T ss_dssp -------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSS
T ss_pred -------------------------------------CCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCC
Confidence 1125799999998888763 22 789999999999854
Q ss_pred cCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecCCCC
Q psy16252 315 TWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDN 394 (545)
Q Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~~~~ 394 (545)
+.......- ............+.. ..+ ..-+...+|||++++.++.+..- .|.+..+.++ .
T Consensus 187 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~p--------~~r~~~pedvA~~v~fL~s~~~i-------tG~~i~VdGG--~ 247 (254)
T d2gdza1 187 AILESIEKE-ENMGQYIEYKDHIKD-MIK--------YYGILDPPLIANGLITLIEDDAL-------NGAIMKITTS--K 247 (254)
T ss_dssp HHHHGGGCH-HHHGGGGGGHHHHHH-HHH--------HHCCBCHHHHHHHHHHHHHCTTC-------SSCEEEEETT--T
T ss_pred hhhhhcccc-ccccccHHHHHHHHh-cCC--------CCCCcCHHHHHHHHHHHHcCCCC-------CCCEEEECCC--C
Confidence 311100000 000000000000000 000 01245678999999988875443 5889998887 5
Q ss_pred cccHHH
Q psy16252 395 PLTWGE 400 (545)
Q Consensus 395 ~~t~~e 400 (545)
.+.|.|
T Consensus 248 ~~~~~~ 253 (254)
T d2gdza1 248 GIHFQD 253 (254)
T ss_dssp EEEECC
T ss_pred eeeccc
Confidence 555443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=1.8e-13 Score=127.49 Aligned_cols=216 Identities=15% Similarity=0.119 Sum_probs=145.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||++|||||++.||++++++|++.|. +|++..|+. +++.+...+ + .....+. |++ +
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~------~~l~~~~~~----~--~~~~~~~~Dv~------~ 61 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA---KVVAVTRTN------SDLVSLAKE----C--PGIEPVCVDLG------D 61 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----S--TTCEEEECCTT------C
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHh----c--CCCeEEEEeCC------C
Confidence 5799999999999999999999999976 688888863 233322221 1 1223333 888 5
Q ss_pred HHHHHHHhc---CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEeccccccCC
Q psy16252 174 PDDKRLVTS---KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTAFSNSYR 239 (545)
Q Consensus 174 ~~~~~~l~~---~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~~v~~~~ 239 (545)
.+.++++++ ++|++|||||.... .+.++..+++|+.|+..+.+.+.. .+.-.++|++||.......
T Consensus 62 ~~~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~ 141 (242)
T d1cyda_ 62 WDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF 141 (242)
T ss_dssp HHHHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccC
Confidence 667777766 68999999997532 356788999999999999886643 1234689999998765322
Q ss_pred CcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeec
Q psy16252 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVIS 314 (545)
Q Consensus 240 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g 314 (545)
.....|+.||+..+.+.+..+ .|+++..+-||.|-.
T Consensus 142 ---------------------------------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T 182 (242)
T d1cyda_ 142 ---------------------------------------PNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLT 182 (242)
T ss_dssp ---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTT
T ss_pred ---------------------------------------CccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccC
Confidence 112579999999999988775 689999999998865
Q ss_pred cCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 315 TWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
+.... ............... ..--+...+|+|++++.++..... ...|+++.+.++
T Consensus 183 ~~~~~-------~~~~~~~~~~~~~~~---------pl~R~~~peeva~~v~fL~S~~s~-----~itG~~i~vDGG 238 (242)
T d1cyda_ 183 DMGKK-------VSADPEFARKLKERH---------PLRKFAEVEDVVNSILFLLSDRSA-----STSGGGILVDAG 238 (242)
T ss_dssp HHHHH-------HTCCHHHHHHHHHHS---------TTSSCBCHHHHHHHHHHHHSGGGT-----TCCSSEEEESTT
T ss_pred HHHHh-------hcCCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhc-----CcCCceEEeCcc
Confidence 42110 111111222211100 012356789999999988754332 234788887765
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.54 E-value=7.9e-14 Score=131.43 Aligned_cols=221 Identities=14% Similarity=0.105 Sum_probs=143.6
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCC--Cccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS--TSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~--~~~~-Dl~~~~lg 171 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. +++++.... ++.... .++. |++
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~------~~l~~~~~~----~~~~g~~~~~~~~Dv~----- 67 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA---SVYTCSRNQ------KELNDCLTQ----WRSKGFKVEASVCDLS----- 67 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----HHHTTCEEEEEECCTT-----
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----HHhcCCCceEEEeeCC-----
Confidence 4699999999999999999999999975 688888853 333332222 222222 2333 888
Q ss_pred CCHHHHHHHh-------c-CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVT-------S-KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~-------~-~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
++++.+.++ . .+|++||+||.... .+.++..+++|+.|+..+.+++... .+-.++|++||.
T Consensus 68 -~~~~v~~~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~ 146 (259)
T d2ae2a_ 68 -SRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSV 146 (259)
T ss_dssp -CHHHHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccc
Confidence 455555443 2 48999999997532 3567889999999999988876542 244689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..+.+.+..+ .++++..+.
T Consensus 147 ~~~~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~ 187 (259)
T d2ae2a_ 147 SGALAV---------------------------------------PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVG 187 (259)
T ss_dssp GGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEE
T ss_pred cccccc---------------------------------------ccccchHHHHHHHHHHHHHHHHHhCcCceEEEEee
Confidence 764321 112679999999998888765 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|-.+....... .......+....... + .--+...+|||++++.++..... --.++++.+
T Consensus 188 PG~i~T~~~~~~~~----~~~~~~~~~~~~~~~-------p--l~R~g~pedvA~~v~fL~S~~s~-----~itG~~i~V 249 (259)
T d2ae2a_ 188 PGVIATSLVEMTIQ----DPEQKENLNKLIDRC-------A--LRRMGEPKELAAMVAFLCFPAAS-----YVTGQIIYV 249 (259)
T ss_dssp ECSBCSHHHHHHTT----SHHHHHHHHHHHHTS-------T--TCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eCcccCHHHHhhhh----chhhHHHHHHHHhcC-------C--CCCCcCHHHHHHHHHHHhCchhC-----CCcCcEEEE
Confidence 99985542110000 000011111111111 0 11256789999999887754332 224778887
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 250 DGG 252 (259)
T d2ae2a_ 250 DGG 252 (259)
T ss_dssp STT
T ss_pred CCC
Confidence 765
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.54 E-value=4.1e-13 Score=126.27 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=144.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lg 171 (545)
++||+||||||++.||++++++|++.|. +|+...|++ +++++..+ .++..... ++. |++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~---~V~i~~r~~------~~l~~~~~----~~~~~~~~~~~~~~D~s----- 65 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA---RVYTCSRNE------KELDECLE----IWREKGLNVEGSVCDLL----- 65 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HHHhcCCCceEEEeecC-----
Confidence 5799999999999999999999999976 688888863 23333222 12222222 233 887
Q ss_pred CCHHHHHHHhc--------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS--------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~--------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.++++++++ .+|++||+|+... ..+.++..+++|+.++..+.+++... ++..++|++||.
T Consensus 66 -~~~~~~~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~ 144 (258)
T d1ae1a_ 66 -SRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSI 144 (258)
T ss_dssp -CHHHHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCG
T ss_pred -CHHHHHHHHHHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccc
Confidence 5555544432 4799999999753 24678889999999999998876532 255799999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.+|...+.+.+..+ .++++..+.
T Consensus 145 ~~~~~~---------------------------------------~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~ 185 (258)
T d1ae1a_ 145 AGFSAL---------------------------------------PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVA 185 (258)
T ss_dssp GGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred cccccc---------------------------------------ccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEe
Confidence 875332 112689999999999988775 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|..+....... ...........+.... + .--+...+|+|++++.++..... .-.|..+.+
T Consensus 186 PG~i~T~~~~~~~~---~~~~~~~~~~~~~~~~-------p--lgR~~~pediA~~v~fL~S~~s~-----~itG~~i~v 248 (258)
T d1ae1a_ 186 PGVILTPLVETAIK---KNPHQKEEIDNFIVKT-------P--MGRAGKPQEVSALIAFLCFPAAS-----YITGQIIWA 248 (258)
T ss_dssp ECSBC----------------CHHHHHHHHHHS-------T--TCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred eCcccCcchhhhhh---hhhhhHHHHHHHHhcC-------C--CCCCcCHHHHHHHHHHHhChhhC-----CCcCcEEEe
Confidence 99997653221111 1001112222222110 1 11267899999999988854332 124777777
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 249 DGG 251 (258)
T d1ae1a_ 249 DGG 251 (258)
T ss_dssp STT
T ss_pred CCC
Confidence 665
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.53 E-value=6.4e-13 Score=125.92 Aligned_cols=222 Identities=15% Similarity=0.141 Sum_probs=146.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc-CCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT-CSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~-Dl~~~~lgl 172 (545)
++||+++||||++.||+++++.|++.|. +|+...|+. +++++.... +... ...++. |++
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga---~V~i~~r~~------~~~~~~~~~----l~~~~~~~~~~~Dv~------ 64 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA---KVVIADIAD------DHGQKVCNN----IGSPDVISFVHCDVT------ 64 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----HCCTTTEEEEECCTT------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----hcCCCceEEEEccCC------
Confidence 6799999999999999999999999975 688888863 333332221 2211 222334 888
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc-----c----hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR-----F----DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~-----~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
++++++.+++ .+|++||+||... + .+.++..+++|+.|+..+.+.+... .+-.++|++||.
T Consensus 65 ~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~ 144 (268)
T d2bgka1 65 KDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASI 144 (268)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccc
Confidence 5666666653 7899999999642 1 2567888999999999999877542 244689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+..... .....|+.||+..+.+.+..+ .|+++..+.
T Consensus 145 ~~~~~~~--------------------------------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~ 186 (268)
T d2bgka1 145 SSFTAGE--------------------------------------GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVS 186 (268)
T ss_dssp GGTCCCT--------------------------------------TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred ccccccc--------------------------------------ccccccchhHHHHHhCHHHHHHHhChhCeEEEecC
Confidence 6643211 112479999999999988765 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|-.+......+. .....-....... ...--+...+|||++++.++..... .-.|+++.+
T Consensus 187 PG~i~T~~~~~~~~~-----~~~~~~~~~~~~~--------~~~gr~~~pedvA~~v~fL~S~~s~-----~itGq~i~V 248 (268)
T d2bgka1 187 PYIVASPLLTDVFGV-----DSSRVEELAHQAA--------NLKGTLLRAEDVADAVAYLAGDESK-----YVSGLNLVI 248 (268)
T ss_dssp ESCCSCCCCTTSSSC-----CHHHHHHHHHHTC--------SSCSCCCCHHHHHHHHHHHHSGGGT-----TCCSCEEEE
T ss_pred CCCccChHHhhhhcC-----CHHHHHHHHHhcc--------ccCCCCcCHHHHHHHHHHHhChhhC-----CccCceEEE
Confidence 999876533221111 0111111111110 0111356789999999988754332 235788888
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 249 DGG 251 (268)
T d2bgka1 249 DGG 251 (268)
T ss_dssp STT
T ss_pred CcC
Confidence 876
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.53 E-value=1.5e-13 Score=128.87 Aligned_cols=217 Identities=13% Similarity=0.059 Sum_probs=142.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~-Dl~~~~lgl 172 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. ++++..... +.. ....++. |++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~------~~~~~~~~~----~~~~~~~~~~~~Dv~------ 64 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA---KVMITGRHS------DVGEKAAKS----VGTPDQIQFFQHDSS------ 64 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----HCCTTTEEEEECCTT------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----hCCCCcEEEEEccCC------
Confidence 6799999999999999999999999975 688888853 233322221 211 1223344 888
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCC-ceEEEEeccc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNL-KMFTYVSTAF 234 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~-~~~v~vSS~~ 234 (545)
++++++.+++ ++|++||||+... ..+.++..+++|+.|+..+++++... .+- .++|++||.+
T Consensus 65 ~~~~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~ 144 (251)
T d1zk4a1 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIE 144 (251)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccc
Confidence 5566655543 6899999999753 13667889999999999999887641 122 4789999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEE
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIF 307 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~ 307 (545)
..... .....|+.||+..+.+.+..+ .|+++..+
T Consensus 145 ~~~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I 185 (251)
T d1zk4a1 145 GFVGD---------------------------------------PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTV 185 (251)
T ss_dssp GTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred eeccC---------------------------------------CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEE
Confidence 64321 112579999999888776543 57999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
.||.|-.+.... ....... ... ... ...--+...+|||++++.++..... --.|+++.
T Consensus 186 ~PG~i~T~~~~~-------~~~~~~~-~~~-~~~--------~pl~R~~~pedvA~~v~fL~S~~s~-----~itG~~i~ 243 (251)
T d1zk4a1 186 HPGYIKTPLVDD-------LPGAEEA-MSQ-RTK--------TPMGHIGEPNDIAYICVYLASNESK-----FATGSEFV 243 (251)
T ss_dssp EECCBCCHHHHT-------STTHHHH-HTS-TTT--------CTTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred eCCCCCChhHHh-------cCCHHHH-HHH-HhC--------CCCCCCcCHHHHHHHHHHHhCchhC-----CCcCcEEE
Confidence 999986542111 1111111 100 000 0111256789999999987754332 22477888
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 244 vDGG 247 (251)
T d1zk4a1 244 VDGG 247 (251)
T ss_dssp ESTT
T ss_pred ECcc
Confidence 8765
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.53 E-value=1.8e-13 Score=129.44 Aligned_cols=230 Identities=11% Similarity=0.071 Sum_probs=137.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHh-hhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIS-LKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~-~~~~~~~~~~-Dl~~~~lgl 172 (545)
++||+++||||++.||++++++|++.|. +|++..|+. +++++....+-.. ....+...+. |++
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga---~V~~~~r~~------~~l~~~~~~l~~~~~~~~~~~~~~~Dvt------ 67 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA---KVTITGRHA------ERLEETRQQILAAGVSEQNVNSVVADVT------ 67 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHHHTTCCGGGEEEEECCTT------
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHHHHhcCCCcCceEEEEccCC------
Confidence 5789999999999999999999999975 688888863 2333322211100 1111223334 888
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc-----------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEec
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR-----------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVST 232 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS 232 (545)
+.++.+++++ ++|++|||||... ..+.++..+++|+.|+..+.+.+... .+-..+|.++|
T Consensus 68 ~~~~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S 147 (264)
T d1spxa_ 68 TDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISS 147 (264)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeee
Confidence 5566665553 6899999999641 12457888999999999888877642 12245666666
Q ss_pred ccc-ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 233 AFS-NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 233 ~~v-~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
... .... .....|+.||+..+.+.+..+ .|+++..
T Consensus 148 ~~~~~~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~ 188 (264)
T d1spxa_ 148 IASGLHAT---------------------------------------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNS 188 (264)
T ss_dssp TTSSSSCC---------------------------------------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred eccccccC---------------------------------------CCchhhhhhhhhHHHHHHHHHHHhcccCeEEEE
Confidence 543 2111 111579999999998888765 6899999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
+.||.|-.+.........+.............. . . + .--+...+|||++++.++..+.. +--.|+++
T Consensus 189 V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~---~---P--l~R~g~pedvA~~v~fL~S~~~s----~~itG~~i 255 (264)
T d1spxa_ 189 ISPGLVATGFGSAMGMPEETSKKFYSTMATMKE-C---V---P--AGVMGQPQDIAEVIAFLADRKTS----SYIIGHQL 255 (264)
T ss_dssp EEECCBCCCC--------------HHHHHHHHH-H---C---T--TSSCBCHHHHHHHHHHHHCHHHH----TTCCSCEE
T ss_pred EeeCCCCCcchhccCCcHHHHHHHHHHHHHHHh-c---C---C--CCCCcCHHHHHHHHHHHhCCccc----CCccCceE
Confidence 999998654222110000000000111111111 0 0 0 11255689999999988754321 01247888
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
.+.++
T Consensus 256 ~vDGG 260 (264)
T d1spxa_ 256 VVDGG 260 (264)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 87765
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=1.4e-13 Score=127.72 Aligned_cols=211 Identities=11% Similarity=0.024 Sum_probs=141.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||++|||||++.||+++++.|++.|. +|++..|+. +.+++ ...+++. |+++ .
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga---~V~~~~r~~------~~l~~-----------~~~~~~~~Dv~~-----~ 56 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGA---EVTICARNE------ELLKR-----------SGHRYVVCDLRK-----D 56 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHH-----------TCSEEEECCTTT-----C
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH------HHHHh-----------cCCcEEEcchHH-----H
Confidence 4689999999999999999999999976 688888863 22221 1222333 7764 3
Q ss_pred HHHHHHHhcCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCccc
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKNIE 243 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~i~ 243 (545)
.+.+.+-+.++|++||+||... ..+.++..+++|+.++..+++.+... .+-.++|++||.......
T Consensus 57 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~---- 132 (234)
T d1o5ia_ 57 LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI---- 132 (234)
T ss_dssp HHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----
T ss_pred HHHHHHHhCCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccc----
Confidence 4555566678999999999653 13567888999999998888776431 244689999998654322
Q ss_pred ccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCC
Q psy16252 244 EIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKE 318 (545)
Q Consensus 244 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~ 318 (545)
.....|+.||+..+.+.+..+ .|+++..+.||.|-.+...
T Consensus 133 -----------------------------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~ 177 (234)
T d1o5ia_ 133 -----------------------------------ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVK 177 (234)
T ss_dssp -----------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHH
T ss_pred -----------------------------------cccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhh
Confidence 112579999999988887765 6899999999988554211
Q ss_pred CCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 319 PIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 319 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.... ......... . ...--+...+|+|++++.++..... .-.++++.+.++
T Consensus 178 -------~~~~-~~~~~~~~~-~--------~pl~R~~~pediA~~v~fL~S~~s~-----~itG~~i~vDGG 228 (234)
T d1o5ia_ 178 -------ELLS-EEKKKQVES-Q--------IPMRRMAKPEEIASVVAFLCSEKAS-----YLTGQTIVVDGG 228 (234)
T ss_dssp -------HHSC-HHHHHHHHT-T--------STTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred -------hhcC-HHHHHHHHh-c--------CCCCCCcCHHHHHHHHHHHhChhhc-----CCcCcEEEECcc
Confidence 1111 111111111 1 1112367789999999887754332 235788888765
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.53 E-value=7.8e-14 Score=131.89 Aligned_cols=203 Identities=18% Similarity=0.175 Sum_probs=137.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lg 171 (545)
-.+++|+||||+|.||.+++++|+++|. +.|+++.|+.......+.+.. .++.. .+.++. |++
T Consensus 7 ~p~gt~lVTGgs~GIG~a~a~~la~~Ga--~~vvl~~R~~~~~~~~~~~~~-------~l~~~g~~v~~~~~Dv~----- 72 (259)
T d2fr1a1 7 KPTGTVLVTGGTGGVGGQIARWLARRGA--PHLLLVSRSGPDADGAGELVA-------ELEALGARTTVAACDVT----- 72 (259)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTC--SEEEEEESSGGGSTTHHHHHH-------HHHHTTCEEEEEECCTT-----
T ss_pred CCcCEEEEECCCcHHHHHHHHHHHHCCC--CEEEEEeCCccCHHHHHHHHH-------HHHhccccccccccccc-----
Confidence 3468999999999999999999999975 357778886433222222211 12212 233344 888
Q ss_pred CCHHHHHHHhc------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEeccccccC
Q psy16252 172 LSPDDKRLVTS------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 172 l~~~~~~~l~~------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v~~~ 238 (545)
+.+++..+++ .+|.|||+|+.... .+.++..+++|+.|+.++.++.... ...++|++||..+...
T Consensus 73 -d~~~~~~~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~SS~a~~~g 150 (259)
T d2fr1a1 73 -DRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFSSFASAFG 150 (259)
T ss_dssp -CHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTC
T ss_pred -hHHHHHHhhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeecchhhccC
Confidence 6667777665 47999999997632 2456778899999999999988775 6689999999976432
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEccceeeccCC
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-~~l~~~i~Rp~~i~g~~~ 317 (545)
. .....|+.+|...+.+.++.. .|++++.+.||.+.++.
T Consensus 151 ~---------------------------------------~~~~~YaAaka~l~~la~~~~~~Gi~v~~I~pg~~~~~g- 190 (259)
T d2fr1a1 151 A---------------------------------------PGLGGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGSG- 190 (259)
T ss_dssp C---------------------------------------TTCTTTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC----
T ss_pred C---------------------------------------cccHHHHHHHHhHHHHHHHHHhCCCCEEECCCCcccCCc-
Confidence 1 111579999999999988776 89999999999876531
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhccccccc
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHE 374 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 374 (545)
..+. .+ ...+ ...-+..++.+++++++..++.....
T Consensus 191 -----~~~~-----~~-----~~~~------~~~G~~~~~~~~~~~~l~~~l~~~~~ 226 (259)
T d2fr1a1 191 -----MAEG-----PV-----ADRF------RRHGVIEMPPETACRALQNALDRAEV 226 (259)
T ss_dssp ------------------------C------TTTTEECBCHHHHHHHHHHHHHTTCS
T ss_pred -----cccc-----hH-----HHHH------HhcCCCCCCHHHHHHHHHHHHhCCCc
Confidence 1110 00 0000 01123457889999999888766543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.52 E-value=1e-13 Score=130.73 Aligned_cols=223 Identities=13% Similarity=0.107 Sum_probs=143.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lgl~ 173 (545)
||++|||||++.||+++++.|+++|. +|++..|+. +++++... .++....+ .+. |++ +
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga---~V~i~~r~~------~~l~~~~~----~l~~~g~~~~~~~~Dvs------~ 62 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL---RVFVCARGE------EGLRTTLK----ELREAGVEADGRTCDVR------S 62 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHHTTCCEEEEECCTT------C
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HHHhcCCcEEEEEeecC------C
Confidence 79999999999999999999999975 677778863 33333222 22222332 333 998 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-----cCCceEEEEeccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-----KNLKMFTYVSTAF 234 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-----~~~~~~v~vSS~~ 234 (545)
+++++.+++ .+|++|||||.... .+.++..+++|+.|+..+++.+... .+-.++|++||..
T Consensus 63 ~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~ 142 (257)
T d2rhca1 63 VPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTG 142 (257)
T ss_dssp HHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccc
Confidence 666665553 68999999997531 3567889999999999999987541 2346899999987
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... .....|+.||+..+.+.+..+ .++++..+.|
T Consensus 143 ~~~~~---------------------------------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~P 183 (257)
T d2rhca1 143 GKQGV---------------------------------------VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCP 183 (257)
T ss_dssp GTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEE
T ss_pred ccccc---------------------------------------ccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEee
Confidence 65321 112679999999999888765 6799999999
Q ss_pred ceeeccCCCCCC-CCccC-ccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 310 SIVISTWKEPIP-GWIDN-LYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 310 ~~i~g~~~~~~~-g~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
|.|-.+...... .+.+. ............... ..--+...+|+|++++.++..... .-.|+++.
T Consensus 184 G~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---------PlgR~~~pedia~~v~fL~S~~s~-----~itG~~i~ 249 (257)
T d2rhca1 184 GFVETPMAASVREHYSDIWEVSTEEAFDRITARV---------PIGRYVQPSEVAEMVAYLIGPGAA-----AVTAQALN 249 (257)
T ss_dssp CSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHTSGGGT-----TCCSCEEE
T ss_pred CCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhc-----CCcCceEE
Confidence 988543100000 00000 000111111111110 011256789999999988754332 23478888
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 250 vDGG 253 (257)
T d2rhca1 250 VCGG 253 (257)
T ss_dssp ESTT
T ss_pred ECcC
Confidence 8765
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.8e-13 Score=130.10 Aligned_cols=223 Identities=12% Similarity=0.089 Sum_probs=143.6
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCC--ccc-CCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCST--SKE-SAQAPD 169 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~--~~~-Dl~~~~ 169 (545)
.++||+++||||++.||+++++.|++.|. +|++..|+. ++++.....+-..+.. ...+ .+. |++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga---~Vvi~~r~~------~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs--- 76 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS---NVVIASRKL------ERLKSAADELQANLPPTKQARVIPIQCNIR--- 76 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHHHTSCTTCCCCEEEEECCTT---
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHHHHhhhccccCceEEEEeccCC---
Confidence 47899999999999999999999999975 688888863 2333322211111111 1122 233 888
Q ss_pred CCCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEec
Q psy16252 170 LGLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVST 232 (545)
Q Consensus 170 lgl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS 232 (545)
++++++.+++ .+|++||||+... ..+.++..+++|+.|+..+++++... .+-.++|++||
T Consensus 77 ---~~~~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss 153 (297)
T d1yxma1 77 ---NEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIV 153 (297)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECC
T ss_pred ---CHHHHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccc
Confidence 5566665543 6899999999753 23667889999999999999877542 13356787776
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
....+. .....|+.||+..+.+.+..+ .|+++..+
T Consensus 154 ~~~~~~----------------------------------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I 193 (297)
T d1yxma1 154 PTKAGF----------------------------------------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCV 193 (297)
T ss_dssp CCTTCC----------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEE
T ss_pred cccccc----------------------------------------cccccchhHHHHHHHHHHHHHHHhcccCceEEEe
Confidence 543221 112679999999998888765 68999999
Q ss_pred ccceeeccCCCCCCCCccCccc-hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYG-PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
.||.|..+.... .... ...+ ........| .--+...+|||++++.++..... ...++++
T Consensus 194 ~PG~i~T~~~~~------~~~~~~~~~----~~~~~~~~p-----lgR~g~pedvA~~v~fL~Sd~s~-----~iTG~~i 253 (297)
T d1yxma1 194 APGVIYSQTAVE------NYGSWGQSF----FEGSFQKIP-----AKRIGVPEEVSSVVCFLLSPAAS-----FITGQSV 253 (297)
T ss_dssp EECSBCCTGGGT------TSGGGGGGG----GTTGGGGST-----TSSCBCTHHHHHHHHHHHSGGGT-----TCCSCEE
T ss_pred eeCcCcCcchhh------hccccCHHH----HHHHHhcCC-----CCCCcCHHHHHHHHHHHhCchhc-----CcCCcEE
Confidence 999986642111 1100 0000 111111000 11255689999999988765432 2357888
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
.+.++
T Consensus 254 ~VDGG 258 (297)
T d1yxma1 254 DVDGG 258 (297)
T ss_dssp EESTT
T ss_pred EeCcC
Confidence 88776
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.52 E-value=1.3e-13 Score=129.96 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=118.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lg 171 (545)
++||+++||||++.||+++++.|++.|. +|++..|++ ++++.... .++....+ .+. |++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~------~~l~~~~~----~~~~~g~~~~~~~~Dv~----- 64 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGT---AIALLDMNR------EALEKAEA----SVREKGVEARSYVCDVT----- 64 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHTTTSCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HHHhcCCcEEEEEccCC-----
Confidence 5789999999999999999999999975 688888863 23333222 22222223 233 888
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc----c----hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR----F----DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~----~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
++++++++++ .+|++||+||... + .+.++..+++|+.++..+.+.+... .+-.++|++||.
T Consensus 65 -~~~~v~~~~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~ 143 (260)
T d1zema1 65 -SEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASM 143 (260)
T ss_dssp -CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred -CHHHHHHHHHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeech
Confidence 5566655543 6899999999642 1 3567888999999999988876541 244689999998
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
++..... ....|+.||+..+.+.+..+ .|+++..+.
T Consensus 144 ~~~~~~~---------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~ 184 (260)
T d1zema1 144 AGVKGPP---------------------------------------NMAAYGTSKGAIIALTETAALDLAPYNIRVNAIS 184 (260)
T ss_dssp HHHSCCT---------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhccCCc---------------------------------------chHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEec
Confidence 7653211 11579999999999888765 689999999
Q ss_pred cceeecc
Q psy16252 309 PSIVIST 315 (545)
Q Consensus 309 p~~i~g~ 315 (545)
||.|-.+
T Consensus 185 PG~v~T~ 191 (260)
T d1zema1 185 PGYMGPG 191 (260)
T ss_dssp ECSBCSS
T ss_pred cCcccCc
Confidence 9998653
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.51 E-value=3e-13 Score=127.21 Aligned_cols=222 Identities=10% Similarity=-0.013 Sum_probs=140.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCCCCH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLGLSP 174 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lgl~~ 174 (545)
|.++||||++.||+++++.|++.|. +|++..|++ +++++... .++....+ .+. |++ ++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga---~V~~~~r~~------~~l~~~~~----~i~~~g~~~~~~~~Dv~------~~ 62 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF---AVAIADYND------ATAKAVAS----EINQAGGHAVAVKVDVS------DR 62 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHHTTCCEEEEECCTT------SH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HHHhcCCcEEEEEeeCC------CH
Confidence 6789999999999999999999975 677788863 23333222 22222222 233 988 55
Q ss_pred HHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEeccccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTAFSN 236 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~~v~ 236 (545)
++++.+++ ++|++|||||.... .+.++..+++|+.|+.++++.+.. .++-.+++++||....
T Consensus 63 ~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~ 142 (255)
T d1gega_ 63 DQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH 142 (255)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhc
Confidence 66665543 68999999997531 366788999999999999887643 2244679999998764
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||+..+.+.+..+ .|+++..+.||.
T Consensus 143 ~~~---------------------------------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~ 183 (255)
T d1gega_ 143 VGN---------------------------------------PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGI 183 (255)
T ss_dssp SCC---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred ccC---------------------------------------cccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCc
Confidence 321 112679999999998888765 689999999998
Q ss_pred eeccCCCCCCCC-ccCc-cchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 312 VISTWKEPIPGW-IDNL-YGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 312 i~g~~~~~~~g~-~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|-.+........ .+.. ............ ....--+...+|+|++++.++..... ...|.++.+.
T Consensus 184 i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~pl~R~~~peevA~~v~fL~S~~a~-----~itG~~i~vD 249 (255)
T d1gega_ 184 VKTPMWAEIDRQVSEAAGKPLGYGTAEFAK---------RITLGRLSEPEDVAACVSYLASPDSD-----YMTGQSLLID 249 (255)
T ss_dssp BSSHHHHHHHHHHHHHHTCCTTHHHHHHHT---------TCTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEES
T ss_pred ccChHHhhhhhhhHhhhcccchhHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCchhC-----CccCcEEEec
Confidence 844310000000 0000 000000011111 01111256789999999988764332 2347788877
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 250 GG 251 (255)
T d1gega_ 250 GG 251 (255)
T ss_dssp SS
T ss_pred CC
Confidence 65
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.51 E-value=3.9e-13 Score=126.04 Aligned_cols=220 Identities=14% Similarity=0.054 Sum_probs=141.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|+++|. +|++..|+. +++++.... +. .+..++. |++ +
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~~~~------~~~~~~~~~----~~-~~~~~~~~Dv~------~ 63 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGA---KVAFSDINE------AAGQQLAAE----LG-ERSMFVRHDVS------S 63 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECSCH------HHHHHHHHH----HC-TTEEEECCCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----hC-CCeEEEEeecC------C
Confidence 6799999999999999999999999975 677777753 233322211 11 1122333 887 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEecccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~~ 237 (545)
.++.+.+++ .+|++|||||.... .+.++..+++|+.|+..+++.+... .+-.++|++||.++..
T Consensus 64 ~~~~~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~ 143 (253)
T d1hxha_ 64 EADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL 143 (253)
T ss_dssp HHHHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc
Confidence 555555543 68999999997532 3668889999999999988877652 1236899999987653
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----c--CCCEEEEccc
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----Q--FFPVCIFRPS 310 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~--~l~~~i~Rp~ 310 (545)
.. .....|+.||+..+.+.+..+ . ++++..+-||
T Consensus 144 ~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG 184 (253)
T d1hxha_ 144 PI---------------------------------------EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPD 184 (253)
T ss_dssp CC---------------------------------------TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEES
T ss_pred Cc---------------------------------------cccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeEC
Confidence 21 111579999999988887654 2 4899999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|-.+.... .+.+... ........ .....-.+...+|+|++++.++..... .-.++++++.+
T Consensus 185 ~i~T~~~~~--~~~~~~~------~~~~~~~~-----~~~~~gr~~~pedvA~~v~fL~S~~s~-----~itG~~i~VDG 246 (253)
T d1hxha_ 185 GIYTPMMQA--SLPKGVS------KEMVLHDP-----KLNRAGRAYMPERIAQLVLFLASDESS-----VMSGSELHADN 246 (253)
T ss_dssp EECCHHHHH--HSCTTCC------HHHHBCBT-----TTBTTCCEECHHHHHHHHHHHHSGGGT-----TCCSCEEEESS
T ss_pred CCcCHhHHh--hCcchhh------HHHHHhCc-----cccccCCCCCHHHHHHHHHHHhChhhC-----CCcCcEEEECc
Confidence 986531100 0000000 00001000 001111366789999999988754332 23578888866
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 247 G 247 (253)
T d1hxha_ 247 S 247 (253)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.49 E-value=1e-12 Score=122.05 Aligned_cols=194 Identities=13% Similarity=0.168 Sum_probs=132.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCc----CEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCC--Cccc-CCCCCCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRV----KTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS--TSKE-SAQAPDL 170 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v----~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~--~~~~-Dl~~~~l 170 (545)
+.||||||++.||+++++.|++.|..+ ..|++..|+. +++++... .++.... ..+. |++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~------~~l~~~~~----~~~~~g~~~~~~~~Dvt---- 67 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA------ADLEKISL----ECRAEGALTDTITADIS---- 67 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH------HHHHHHHH----HHHTTTCEEEEEECCTT----
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH------HHHHHHHH----HHHhcCCcEEEEEecCC----
Confidence 568999999999999999999998642 1366666653 23332211 2222222 2333 888
Q ss_pred CCCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 171 GLSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 171 gl~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
+.++++++++ .+|++|||||.... .+.++..+++|+.|+..+++.+... .+-.++|++||.
T Consensus 68 --~~~~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~ 145 (240)
T d2bd0a1 68 --DMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSV 145 (240)
T ss_dssp --SHHHHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred --CHHHHHHHHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEech
Confidence 5566665543 68999999997532 3667889999999999988877542 134689999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
.+.... .....|+.||+..+.+.+..+ .|+++..+.
T Consensus 146 ~~~~~~---------------------------------------~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~ 186 (240)
T d2bd0a1 146 AATKAF---------------------------------------RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQ 186 (240)
T ss_dssp GGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred hhcCCC---------------------------------------CCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEee
Confidence 765321 112679999998888887764 689999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
||.|-.+..... .......+...+|+|++++.++..+.
T Consensus 187 PG~v~T~~~~~~---------------------------~~~~~~~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 187 PGAVYTPMWGKV---------------------------DDEMQALMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp ECCBCSTTTCCC---------------------------CSTTGGGSBCHHHHHHHHHHHHTSCT
T ss_pred eCcccCchhhhc---------------------------CHhhHhcCCCHHHHHHHHHHHHcCCc
Confidence 999855421100 01112234567999999999877654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.48 E-value=3.3e-13 Score=128.28 Aligned_cols=230 Identities=11% Similarity=0.056 Sum_probs=140.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHH-hhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAI-SLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~-~~~~~~~~~~~-Dl~~~~lgl 172 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. +++++....+-. .....+...+. |++
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~------~~l~~~~~~i~~~~~~~~~~~~~~~Dv~------ 66 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA---QVTITGRNE------DRLEETKQQILKAGVPAEKINAVVADVT------ 66 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHHHTTCCGGGEEEEECCTT------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHHHHHcCCCCcceEEEEeeCC------
Confidence 4689999999999999999999999975 688888863 233332221100 01111222333 888
Q ss_pred CHHHHHHHhc-------CccEEEEcccccc---------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecc
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLR---------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTA 233 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~---------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~ 233 (545)
++++++++++ .+|++|||||... ..+.++..+++|+.|+..+.+.+... .+-.+++++||.
T Consensus 67 ~~~~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~ 146 (274)
T d1xhla_ 67 EASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIV 146 (274)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhh
Confidence 5556655543 6899999998531 12457888999999999988877542 234577777776
Q ss_pred ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEc
Q psy16252 234 FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFR 308 (545)
Q Consensus 234 ~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~R 308 (545)
+..... .....|+.||...+.+.+..+ .|+++..+.
T Consensus 147 ~~~~~~---------------------------------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~ 187 (274)
T d1xhla_ 147 AGPQAH---------------------------------------SGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVS 187 (274)
T ss_dssp GSSSCC---------------------------------------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred hccccC---------------------------------------CCCceehhhhhHHHHHHHHHHHHHhHhCCceeeec
Confidence 543211 111579999999999887765 789999999
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEe
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNY 388 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i 388 (545)
||.|-.+...... ......... ........ ..-..--+...+|||++++.++..+.. +--.|+++.+
T Consensus 188 PG~i~T~~~~~~~---~~~~~~~~~-~~~~~~~~-----~~iPlgR~g~pediA~~v~fL~S~d~s----~~itG~~i~v 254 (274)
T d1xhla_ 188 PGAVATGFMGAMG---LPETASDKL-YSFIGSRK-----ECIPVGHCGKPEEIANIIVFLADRNLS----SYIIGQSIVA 254 (274)
T ss_dssp ECCBCSSHHHHTT---CCHHHHHHH-HHHHHHCT-----TTCTTSSCBCHHHHHHHHHHHHCHHHH----TTCCSCEEEE
T ss_pred cCCCcCchhhhhc---ccchhhHHH-HHHHHHHH-----cCCCCCCCcCHHHHHHHHHHHcCCccc----cCccCcEEEe
Confidence 9998553211000 000000111 11110000 000111255789999999987753211 0124788888
Q ss_pred ecC
Q psy16252 389 VNS 391 (545)
Q Consensus 389 ~~~ 391 (545)
.++
T Consensus 255 DGG 257 (274)
T d1xhla_ 255 DGG 257 (274)
T ss_dssp STT
T ss_pred CcC
Confidence 876
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=2.2e-13 Score=131.03 Aligned_cols=215 Identities=13% Similarity=0.107 Sum_probs=134.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCC---HHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS---PQQRIDKMLDTVAISLKFTCSTSKESAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~---~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lg 171 (545)
++||+++||||++.||+++++.|++.|. +|++..|+..... ..+.+++... .+.........|+.+.+-
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~Ga---~Vvi~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~- 76 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERGA---LVVVNDLGGDFKGVGKGSSAADKVVE----EIRRRGGKAVANYDSVEA- 76 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECCCBCTTSCBCCSHHHHHHHH----HHHHTTCEEEEECCCGGG-
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCchhhhhhhhHHHHHHHHH----HHhhcccccccccchHHH-
Confidence 5799999999999999999999999975 6777766543211 1122222211 111111111115553210
Q ss_pred CCHHHHHHH---hcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccC
Q psy16252 172 LSPDDKRLV---TSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 172 l~~~~~~~l---~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~ 238 (545)
..+.++.+ +.++|++|||||.... .+.++..+++|+.|+..+++.+... .+-.++|++||..+...
T Consensus 77 -~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~ 155 (302)
T d1gz6a_ 77 -GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYG 155 (302)
T ss_dssp -HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC
T ss_pred -HHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCC
Confidence 11222222 2379999999997532 3567889999999999998876541 13469999999876422
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.||+..+.+.+..+ .|+++..+-||.+-
T Consensus 156 ~---------------------------------------~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~ 196 (302)
T d1gz6a_ 156 N---------------------------------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGS 196 (302)
T ss_dssp C---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCS
T ss_pred C---------------------------------------CCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCC
Confidence 1 112689999999988887765 78999999999763
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
...... . +. ....++..+|||++++.++..... ..++++.+.++
T Consensus 197 t~~~~~-------~--~~-------------------~~~~~~~PedvA~~v~fL~S~~a~------itG~~i~vdGG 240 (302)
T d1gz6a_ 197 RMTETV-------M--PE-------------------DLVEALKPEYVAPLVLWLCHESCE------ENGGLFEVGAG 240 (302)
T ss_dssp TTTGGG-------S--CH-------------------HHHHHSCGGGTHHHHHHHTSTTCC------CCSCEEEEETT
T ss_pred cchhhc-------C--cH-------------------hhHhcCCHHHHHHHHHHHcCCCcC------CCCcEEEeCCC
Confidence 321110 0 01 112234568999999887643221 24666666544
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.47 E-value=4.8e-13 Score=127.28 Aligned_cols=225 Identities=15% Similarity=0.170 Sum_probs=138.8
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. +++++.... +. .+...+. |++ +
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~------~~l~~~~~~----~~-~~~~~~~~Dv~------~ 62 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGA---KVAVLDKSA------ERLAELETD----HG-DNVLGIVGDVR------S 62 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----HG-GGEEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----cC-CCeeEEecccc------c
Confidence 4689999999999999999999999975 688888863 344332221 10 1122223 887 5
Q ss_pred HHHHHHHh-------cCccEEEEccccccc------------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEec
Q psy16252 174 PDDKRLVT-------SKVNLVFHCAATLRF------------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVST 232 (545)
Q Consensus 174 ~~~~~~l~-------~~vd~Vih~Aa~~~~------------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS 232 (545)
.++.++++ ..+|++||+||.... .+.++..+++|+.|+..+++.+... .+-.++|++||
T Consensus 63 ~~~~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S 142 (276)
T d1bdba_ 63 LEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTIS 142 (276)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeee
Confidence 55555554 378999999996421 1347888999999999888876531 11257888888
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----cCCCEEEEc
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----QFFPVCIFR 308 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----~~l~~~i~R 308 (545)
..+.... .....|+.||+..+.+.+..+ +++++..+.
T Consensus 143 ~~~~~~~---------------------------------------~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~ 183 (276)
T d1bdba_ 143 NAGFYPN---------------------------------------GGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVG 183 (276)
T ss_dssp GGGTSTT---------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred chhccCC---------------------------------------CCCchHHHHHHHHHHHHHHHHHHhhcceEEcccC
Confidence 7654221 112579999999999888765 669999999
Q ss_pred cceeeccCCCCCCCCc-cCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 309 PSIVISTWKEPIPGWI-DNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
||.|-.+...+...+. ........+.... ....+ .--+...+|+|++++.++..+.. +.-.+++++
T Consensus 184 PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~P--------lgR~g~peeva~~v~fL~S~~~a----~~itG~~i~ 250 (276)
T d1bdba_ 184 SGGINSDLRGPSSLGMGSKAISTVPLADML-KSVLP--------IGRMPEVEEYTGAYVFFATRGDA----APATGALLN 250 (276)
T ss_dssp ECCCCSCCCCCGGGC---------CHHHHH-TTTCT--------TSSCCCGGGGSHHHHHHHCHHHH----TTCSSCEEE
T ss_pred CCCEecCcCCccchhhhhhccCcHHHHHHH-HhcCC--------CCCCcCHHHHHHHHHHHcCCccc----CCeeCcEEE
Confidence 9998654322211000 0000000111111 11110 11255678999998876642211 012478888
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 251 VDGG 254 (276)
T d1bdba_ 251 YDGG 254 (276)
T ss_dssp ESSS
T ss_pred ECcC
Confidence 8776
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=6.7e-13 Score=125.01 Aligned_cols=219 Identities=13% Similarity=0.051 Sum_probs=138.4
Q ss_pred hcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
++||++|||||+| .||++++++|++.|. +|++..|++.. .+...+.... ......+. |++
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~Ga---~V~i~~~~~~~---~~~~~~~~~~------~~~~~~~~~D~~----- 68 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA---EVALSYQAERL---RPEAEKLAEA------LGGALLFRADVT----- 68 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTTC---EEEEEESSGGG---HHHHHHHHHH------TTCCEEEECCTT-----
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCC---EEEEEeCcHHH---HHHHHHhhhc------cCcccccccccC-----
Confidence 5789999999998 799999999999976 57666665321 1111111110 01222333 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-----------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEec
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-----------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVST 232 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS 232 (545)
++++++.+++ ++|++||+|+... ..+.+...+++|+.++..+++.+... .+-.++|++||
T Consensus 69 -~~~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS 147 (256)
T d1ulua_ 69 -QDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY 147 (256)
T ss_dssp -CHHHHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred -CHHHHHHHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEee
Confidence 5566665543 6899999998632 12346678899999999999887642 12257999999
Q ss_pred cccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEE
Q psy16252 233 AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIF 307 (545)
Q Consensus 233 ~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~ 307 (545)
..+.... .....|+.||+..+.+.+..+ .|+++..+
T Consensus 148 ~~~~~~~---------------------------------------~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I 188 (256)
T d1ulua_ 148 YASEKVV---------------------------------------PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAI 188 (256)
T ss_dssp GGGTSBC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred hHhcCCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhcccCCEEeee
Confidence 8765321 112689999999999988775 68999999
Q ss_pred ccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEE
Q psy16252 308 RPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYN 387 (545)
Q Consensus 308 Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~ 387 (545)
.||.|..+.....+ ............. | .--+...+|||++++.++..... --.++++.
T Consensus 189 ~PG~i~t~~~~~~~-------~~~~~~~~~~~~~----p-----l~R~~~pedvA~~v~fL~S~~s~-----~itG~~i~ 247 (256)
T d1ulua_ 189 SAGPVRTVAARSIP-------GFTKMYDRVAQTA----P-----LRRNITQEEVGNLGLFLLSPLAS-----GITGEVVY 247 (256)
T ss_dssp EECCC-----------------CHHHHHHHHHHS----T-----TSSCCCHHHHHHHHHHHHSGGGT-----TCCSCEEE
T ss_pred ccceeeeccccchh-------hhHHHHHHHHhcC----C-----CCCCcCHHHHHHHHHHHhCchhC-----CccCCeEE
Confidence 99998665322211 1112222221111 0 11256689999999888764332 12477888
Q ss_pred eecC
Q psy16252 388 YVNS 391 (545)
Q Consensus 388 i~~~ 391 (545)
+.++
T Consensus 248 VDGG 251 (256)
T d1ulua_ 248 VDAG 251 (256)
T ss_dssp ESTT
T ss_pred ECcC
Confidence 7765
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5.7e-13 Score=125.27 Aligned_cols=206 Identities=16% Similarity=0.113 Sum_probs=133.0
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC----CCccc-CCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC----STSKE-SAQAP 168 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~----~~~~~-Dl~~~ 168 (545)
.+++|++|||||++.||.++++.|+++|. +|+...|+. +++++... .++... ...+. |++
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~---~Vv~~~r~~------~~l~~~~~----~l~~~~~~~~~~~~~~Dls-- 71 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGL---KVVGCARTV------GNIEELAA----ECKSAGYPGTLIPYRCDLS-- 71 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH----HHHHTTCSSEEEEEECCTT--
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHH----HHHhcCCCceEEEEEccCC--
Confidence 37899999999999999999999999975 677777753 33333222 222221 22333 888
Q ss_pred CCCCCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH----cc-CCceEEE
Q psy16252 169 DLGLSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ----CK-NLKMFTY 229 (545)
Q Consensus 169 ~lgl~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~~~~v~ 229 (545)
++++++++++ ++|++||||+... ..+.++..+++|+.++..+.+.+.+ .+ +-.++|+
T Consensus 72 ----~~~~v~~~v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~ 147 (257)
T d1xg5a_ 72 ----NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIIN 147 (257)
T ss_dssp ----CHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred ----CHHHHHHHHHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEE
Confidence 5666665543 6899999999753 2467788999999998888776643 21 2368999
Q ss_pred EeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCC
Q psy16252 230 VSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFF 302 (545)
Q Consensus 230 vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l 302 (545)
+||.+....... .....|+.+|+..+.+.+.++ .++
T Consensus 148 isS~~~~~~~p~-------------------------------------~~~~~Y~~sKaal~~ltr~la~el~~~~~~I 190 (257)
T d1xg5a_ 148 INSMSGHRVLPL-------------------------------------SVTHFYSATKYAVTALTEGLRQELREAQTHI 190 (257)
T ss_dssp ECCGGGTSCCSC-------------------------------------GGGHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred EechHhcCCCCC-------------------------------------cccHHHHHHHHHHHhCHHHHHHHHHhCCCCE
Confidence 999876432100 001469999999988876442 679
Q ss_pred CEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccc
Q psy16252 303 PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH 373 (545)
Q Consensus 303 ~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~ 373 (545)
++..+-||.+-.+..... .+. ......... ....+...+|||++++.++..+.
T Consensus 191 ~vn~i~PG~i~t~~~~~~---~~~--~~~~~~~~~-------------~~~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 191 RATCISPGVVETQFAFKL---HDK--DPEKAAATY-------------EQMKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp EEEEEEESCBCSSHHHHH---TTT--CHHHHHHHH-------------C---CBCHHHHHHHHHHHHHSCT
T ss_pred EEEEEeCCCCCChhhhhc---Chh--hHHHHHhcC-------------CCCCCcCHHHHHHHHHHHhCChh
Confidence 999999998754311000 000 001111111 11235678999999988876543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.46 E-value=5.5e-13 Score=126.62 Aligned_cols=227 Identities=12% Similarity=0.079 Sum_probs=138.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHH-hhhhcCCCccc-CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAI-SLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~-~~~~~~~~~~~-Dl~~~~lgl 172 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. +++++....+-. .....+...+. |++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~l~~r~~------~~l~~~~~~l~~~~~~~~~~~~~~~Dvs------ 67 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGA---NVTITGRSS------ERLEETRQIILKSGVSEKQVNSVVADVT------ 67 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHHTTTCCGGGEEEEECCTT------
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHHHHhcCCCCCceEEEEccCC------
Confidence 5789999999999999999999999975 688888863 233332221100 00011122333 888
Q ss_pred CHHHHHHHhc-------CccEEEEccccccc-----------hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEec
Q psy16252 173 SPDDKRLVTS-------KVNLVFHCAATLRF-----------DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVST 232 (545)
Q Consensus 173 ~~~~~~~l~~-------~vd~Vih~Aa~~~~-----------~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS 232 (545)
++++++.+++ ++|++|||||.... .+.++..+++|+.|+..+++++... .+-..+|.++|
T Consensus 68 ~~~~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S 147 (272)
T d1xkqa_ 68 TEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSS 147 (272)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccc
Confidence 5566665553 68999999997521 1247788899999999998876542 11235555555
Q ss_pred c-ccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 233 A-FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 233 ~-~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
. +..... .....|+.||+..+.+.+..+ .|+++..
T Consensus 148 s~a~~~~~---------------------------------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~ 188 (272)
T d1xkqa_ 148 IVAGPQAQ---------------------------------------PDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNS 188 (272)
T ss_dssp GGGSSSCC---------------------------------------CSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred hhccccCC---------------------------------------CCcchhhhHHHHHHHHHHHHHHHhcccCeEEEE
Confidence 4 332211 112579999999998888765 7899999
Q ss_pred EccceeeccCCCCCCCCccCccchHHH---HHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCC
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGL---VTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCL 383 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~ 383 (545)
+.||.|-.+.... ....... ......... .....--+...+|+|++++.++..... ....|
T Consensus 189 I~PG~i~T~~~~~-------~~~~~~~~~~~~~~~~~~~-----~~~PlgR~g~pediA~~v~fL~S~~as----~~iTG 252 (272)
T d1xkqa_ 189 VSPGMVETGFTNA-------MGMPDQASQKFYNFMASHK-----ECIPIGAAGKPEHIANIILFLADRNLS----FYILG 252 (272)
T ss_dssp EEECCBCSSHHHH-------TTCCHHHHHHHHHHHHHCT-----TTCTTSSCBCHHHHHHHHHHHHCHHHH----TTCCS
T ss_pred EeeCCCcchhhhc-------cCCchHHHHHHHHHHHHHh-----cCCCCCCCcCHHHHHHHHHHHhCcchh----CCccC
Confidence 9999985432110 0000111 011000000 000111256789999999988753321 01247
Q ss_pred CEEEeecC
Q psy16252 384 PIYNYVNS 391 (545)
Q Consensus 384 ~vy~i~~~ 391 (545)
+++.+.++
T Consensus 253 ~~i~vDGG 260 (272)
T d1xkqa_ 253 QSIVADGG 260 (272)
T ss_dssp CEEEESTT
T ss_pred eEEEeCcC
Confidence 88888776
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.7e-13 Score=124.59 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=116.1
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lg 171 (545)
.+||+++||||++.||++++++|+++|. +|++..|+. +++++.... +.....+ .+. |++
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G~---~V~l~~r~~------~~l~~~~~~----~~~~~~~~~~~~~Dvs----- 66 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLKS---KLVLWDINK------HGLEETAAK----CKGLGAKVHTFVVDCS----- 66 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----HHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----HHhcCCcEEEEEeeCC-----
Confidence 5799999999999999999999999975 788888863 334333222 2222333 233 998
Q ss_pred CCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAF 234 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~ 234 (545)
+.++++.+++ .+|++|||||.... .+.++..+++|+.|+.++++.+... .+-.++|++||..
T Consensus 67 -~~~~v~~~~~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~ 145 (244)
T d1yb1a_ 67 -NREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAA 145 (244)
T ss_dssp -CHHHHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred -CHHHHHHHHHHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecch
Confidence 5556555443 68999999998632 2456788999999999988866541 2456899999997
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc--------cCCCEEE
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA--------QFFPVCI 306 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~--------~~l~~~i 306 (545)
+..... ....|+.||+..+.+.+..+ .|+.++.
T Consensus 146 ~~~~~~---------------------------------------~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~ 186 (244)
T d1yb1a_ 146 GHVSVP---------------------------------------FLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTC 186 (244)
T ss_dssp -CCCHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred hcCCCC---------------------------------------CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 653210 01579999998877776654 3789999
Q ss_pred Eccceeec
Q psy16252 307 FRPSIVIS 314 (545)
Q Consensus 307 ~Rp~~i~g 314 (545)
+.||.|-.
T Consensus 187 i~PG~v~T 194 (244)
T d1yb1a_ 187 LCPNFVNT 194 (244)
T ss_dssp EEETHHHH
T ss_pred EEcCCCCC
Confidence 99998744
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4.1e-13 Score=125.55 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=142.3
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|++.|. +|++..|+. +.++..... + ....++. |++ +
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~------~~~~~~~~~----~--~~~~~~~~Dvs------~ 62 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA---RVVICDKDE------SGGRALEQE----L--PGAVFILCDVT------Q 62 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH----C--TTEEEEECCTT------S
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHh----c--CCCeEEEccCC------C
Confidence 6799999999999999999999999975 688888763 233322111 1 1122333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc----c----hHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEeccccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR----F----DEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFSN 236 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~----~----~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v~ 236 (545)
.++++++++ ++|++||+||... + .+.++..+++|+.|+..+++++... .+-.++|++||.++.
T Consensus 63 ~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~ 142 (250)
T d1ydea1 63 EDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGA 142 (250)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCccccccccc
Confidence 566666553 6899999999542 1 2557888999999999988876542 112589999999764
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
... .....|+.||...+.+.+..+ .++++..+.||.
T Consensus 143 ~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~ 183 (250)
T d1ydea1 143 IGQ---------------------------------------AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGN 183 (250)
T ss_dssp HCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECS
T ss_pred ccc---------------------------------------cCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCC
Confidence 321 112689999999998887765 789999999999
Q ss_pred eeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 312 i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|-.+....... ........+....... ..--+...+|+|++++.++.. .. -..++++.+.++
T Consensus 184 i~T~~~~~~~~---~~~~~~~~~~~~~~~~---------pl~R~g~p~eva~~v~fL~Sd-a~-----~itG~~i~vDGG 245 (250)
T d1ydea1 184 IWTPLWEELAA---LMPDPRASIREGMLAQ---------PLGRMGQPAEVGAAAVFLASE-AN-----FCTGIELLVTGG 245 (250)
T ss_dssp BCCHHHHHHHT---TSSSHHHHHHHHHHTS---------TTSSCBCHHHHHHHHHHHHHH-CT-----TCCSCEEEESTT
T ss_pred CCChhHHHHhh---cCCCHHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCc-cC-----CCcCCeEEECCC
Confidence 85431100000 0001112222211111 112356789999999887643 21 134788888766
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.44 E-value=2.4e-12 Score=119.85 Aligned_cols=215 Identities=12% Similarity=0.074 Sum_probs=138.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcC--CCccc-CCCCCCCCCCH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC--STSKE-SAQAPDLGLSP 174 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~-Dl~~~~lgl~~ 174 (545)
+.||||||++.||++++++|++.|. +|++..+... +.++.... .++... ...+. |++ ++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga---~V~i~~~~~~-----~~~~~~~~----~~~~~g~~~~~~~~Dv~------~~ 63 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGC---KVLVNYARSA-----KAAEEVSK----QIEAYGGQAITFGGDVS------KE 63 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH-----HHHHHHHH----HHHHHTCEEEEEECCTT------SH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCCH-----HHHHHHHH----HHHHcCCcEEEEeCCCC------CH
Confidence 5799999999999999999999975 5665544321 12222111 111112 22333 888 56
Q ss_pred HHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEecccccc
Q psy16252 175 DDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNS 237 (545)
Q Consensus 175 ~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~ 237 (545)
++++++++ ++|++||||+... ..+.++..+++|+.|+..+.+.+... .+-.++|++||.++..
T Consensus 64 ~~v~~~~~~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~ 143 (244)
T d1edoa_ 64 ADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI 143 (244)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcC
Confidence 66665543 6899999999753 23667889999999999988876541 2446999999987643
Q ss_pred CCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcccee
Q psy16252 238 YRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIV 312 (545)
Q Consensus 238 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i 312 (545)
.. .....|+.||...+.+.+..+ .|+++..+.||.|
T Consensus 144 ~~---------------------------------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i 184 (244)
T d1edoa_ 144 GN---------------------------------------IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFI 184 (244)
T ss_dssp CC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSB
T ss_pred CC---------------------------------------CCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEeccee
Confidence 21 112689999999999988775 6899999999988
Q ss_pred eccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 313 ISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 313 ~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
-.+... .+. ......... .. ..--+...+|+|++++.++..+.. +.-.|+++.+.++
T Consensus 185 ~T~~~~-------~~~--~~~~~~~~~-~~--------pl~R~~~p~dvA~~v~fLa~S~~a----~~itG~~i~vdGG 241 (244)
T d1edoa_ 185 ASDMTA-------KLG--EDMEKKILG-TI--------PLGRTGQPENVAGLVEFLALSPAA----SYITGQAFTIDGG 241 (244)
T ss_dssp CSHHHH-------TTC--HHHHHHHHT-SC--------TTCSCBCHHHHHHHHHHHHHCSGG----GGCCSCEEEESTT
T ss_pred ccHHHH-------Hhh--HHHHHHHHh-cC--------CCCCCcCHHHHHHHHHHHHCCchh----cCCcCCeEEeCCC
Confidence 543211 111 122222211 11 112256789999999887533321 0124778877665
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.44 E-value=1.8e-12 Score=120.49 Aligned_cols=214 Identities=14% Similarity=0.110 Sum_probs=140.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||++++++|+++|. +|++..|+. +++.+.... +. .+..+++ |++ +
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~---~V~~~~r~~------~~~~~~~~~----~~-~~~~~~~~Dls------~ 62 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGA---SLVAVDREE------RLLAEAVAA----LE-AEAIAVVADVS------D 62 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHT----CC-SSEEEEECCTT------S
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHH----cC-CceEEEEecCC------C
Confidence 5789999999999999999999999976 688888863 223222111 11 1122333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccC
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~ 238 (545)
+++++++++ ++|++||+|+.... .+.++..+++|+.++..+.+++... .+-+.++.+||.+....
T Consensus 63 ~~~i~~~~~~i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~ 142 (241)
T d2a4ka1 63 PKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA 142 (241)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH
T ss_pred HHHHHHHHHHHHHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccc
Confidence 566655543 68999999987531 3567888999999999999987663 23344555555443211
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
.. ...|+.+|+..|.+.+..+ .++++..+.||.|-
T Consensus 143 ~~----------------------------------------~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~ 182 (241)
T d2a4ka1 143 FG----------------------------------------LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQ 182 (241)
T ss_dssp HH----------------------------------------HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBC
T ss_pred cC----------------------------------------ccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCC
Confidence 00 1579999999999998875 67999999999985
Q ss_pred ccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 314 STWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 314 g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.+... +. +........... ..--+...+|||++++.++..... --.+.+..+.++
T Consensus 183 T~~~~-------~~--~~~~~~~~~~~~---------p~~r~~~p~dva~~v~fL~S~~s~-----~itG~~i~vDGG 237 (241)
T d2a4ka1 183 TPMTA-------GL--PPWAWEQEVGAS---------PLGRAGRPEEVAQAALFLLSEESA-----YITGQALYVDGG 237 (241)
T ss_dssp CGGGT-------TS--CHHHHHHHHHTS---------TTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred CHHHH-------hh--hHhHHHHHHhCC---------CCCCCcCHHHHHHHHHHHhcchhC-----CCcCceEEeCCC
Confidence 44221 11 122222222211 112356789999999998865432 124677777665
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.43 E-value=4.8e-12 Score=119.18 Aligned_cols=226 Identities=11% Similarity=0.040 Sum_probs=143.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||++|||||++.||+++++.|++.|. +|++..|+.... .+..+++.. .. ..+...+. |++ +
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~~~~--~~~~~~~~~----~~-g~~~~~~~~Dv~------~ 70 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA---NVAVIYRSAADA--VEVTEKVGK----EF-GVKTKAYQCDVS------N 70 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCTTH--HHHHHHHHH----HH-TCCEEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHH--HHHHHHHHH----Hh-CCceEEEEccCC------C
Confidence 5799999999999999999999999975 688888875431 221111111 01 11222333 888 5
Q ss_pred HHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHH----ccCCceEEEEecccc
Q psy16252 174 PDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQ----CKNLKMFTYVSTAFS 235 (545)
Q Consensus 174 ~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~~~v~vSS~~v 235 (545)
+++++.+++ .+|++||||+... ..+.++..+++|+.|+..+.+.+.. ...-..++.+||...
T Consensus 71 ~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~ 150 (260)
T d1h5qa_ 71 TDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSS 150 (260)
T ss_dssp HHHHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccc
Confidence 666665553 6899999999652 1356788999999999888876543 224456666666654
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPS 310 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~ 310 (545)
....... . ........|+.||+..+.+.+..+ .|+++..+.||
T Consensus 151 ~~~~~~~---~-----------------------------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG 198 (260)
T d1h5qa_ 151 QIINQSS---L-----------------------------NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPG 198 (260)
T ss_dssp TSCCEEE---T-----------------------------TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ccccccc---c-----------------------------ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCC
Confidence 4321100 0 000112579999999999887765 78999999999
Q ss_pred eeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 311 IVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 311 ~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
.|-.+.... . ............ | .--+...+|+|++++.++..... --.|+++.+.+
T Consensus 199 ~i~T~~~~~-------~--~~~~~~~~~~~~----p-----l~R~g~pedvA~~v~fL~S~~s~-----~itG~~i~VDG 255 (260)
T d1h5qa_ 199 YVNTDQTAH-------M--DKKIRDHQASNI----P-----LNRFAQPEEMTGQAILLLSDHAT-----YMTGGEYFIDG 255 (260)
T ss_dssp SBCCGGGGG-------S--CHHHHHHHHHTC----T-----TSSCBCGGGGHHHHHHHHSGGGT-----TCCSCEEEECT
T ss_pred cccCcchhc-------c--CHHHHHHHHhcC----C-----CCCCcCHHHHHHHHHHHhcchhC-----CCcCceEEECC
Confidence 986542211 1 112222222211 0 11256688999999887754332 22478888877
Q ss_pred C
Q psy16252 391 S 391 (545)
Q Consensus 391 ~ 391 (545)
+
T Consensus 256 G 256 (260)
T d1h5qa_ 256 G 256 (260)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=1.6e-12 Score=120.68 Aligned_cols=204 Identities=13% Similarity=0.091 Sum_probs=131.8
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC-CCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL-GLS 173 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l-gl~ 173 (545)
+||+||||||+|.||+++++.|++.|. +|+++.|.......... ... |....+- ..-
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~---~V~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 59 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNW---WVASIDVVENEEASASV------------------IVKMTDSFTEQADQV 59 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSCCTTSSEEE------------------ECCCCSCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCccccccccc------------------eeecccCcHHHHHHH
Confidence 379999999999999999999999876 67777776543211000 000 1110000 000
Q ss_pred HHHHHHHhc--CccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCCcc
Q psy16252 174 PDDKRLVTS--KVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRKNI 242 (545)
Q Consensus 174 ~~~~~~l~~--~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i 242 (545)
.....+... ++|++||+||... ..+.++..+++|+.++.++.+++... .+-.++|++||.++.....
T Consensus 60 ~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~-- 137 (236)
T d1dhra_ 60 TAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP-- 137 (236)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT--
T ss_pred HHHHHHHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCcc--
Confidence 011122222 5899999998531 12456778899999999999888762 2336899999987653221
Q ss_pred cccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEEccceeecc
Q psy16252 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIFRPSIVIST 315 (545)
Q Consensus 243 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~Rp~~i~g~ 315 (545)
....|+.||+..+.+.+..+ .++++..+.||.|-.+
T Consensus 138 -------------------------------------~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~ 180 (236)
T d1dhra_ 138 -------------------------------------GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP 180 (236)
T ss_dssp -------------------------------------TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH
T ss_pred -------------------------------------CCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC
Confidence 11689999999999999875 3789999999988553
Q ss_pred CCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
+..... .....-.+++.+++|+.+..++..... ...|.++.+.+
T Consensus 181 -----------------~~~~~~---------~~~~~~~~~~pe~va~~~~~l~s~~~~-----~i~G~~i~v~~ 224 (236)
T d1dhra_ 181 -----------------MNRKSM---------PEADFSSWTPLEFLVETFHDWITGNKR-----PNSGSLIQVVT 224 (236)
T ss_dssp -----------------HHHHHS---------TTSCGGGSEEHHHHHHHHHHHHTTTTC-----CCTTCEEEEEE
T ss_pred -----------------cchhhC---------ccchhhcCCCHHHHHHHHHHHhCCCcc-----CCCCCeEEEEE
Confidence 111111 112234588999999999988765432 23466666643
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.42 E-value=8.5e-12 Score=118.35 Aligned_cols=229 Identities=13% Similarity=0.042 Sum_probs=142.6
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCc--cc-CCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTS--KE-SAQAPD 169 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~--~~-Dl~~~~ 169 (545)
.-++||++|||||++.||+++++.|++.|. +|++..|+.. +.++.. .+.++....+. +. |++
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga---~Vvi~~~~~~-----~~~~~~----~~~~~~~g~~~~~~~~D~~--- 78 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGC---KVIVNYANST-----ESAEEV----VAAIKKNGSDAACVKANVG--- 78 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCH-----HHHHHH----HHHHHHTTCCEEEEECCTT---
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCch-----HHHHHH----HHHHHhhCCceeeEeCCCC---
Confidence 337899999999999999999999999976 5776666532 222221 11222222222 22 887
Q ss_pred CCCCHHHHHHHhc-------CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccc
Q psy16252 170 LGLSPDDKRLVTS-------KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAF 234 (545)
Q Consensus 170 lgl~~~~~~~l~~-------~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~ 234 (545)
+++++..+++ .+|+++|+|+.... .+.++..+++|+.++..+++++... ..-.+.++++|..
T Consensus 79 ---~~~~v~~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~ 155 (272)
T d1g0oa_ 79 ---VVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT 155 (272)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred ---CHHHHHHHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccc
Confidence 5556655543 68999999997532 3567888999999999999988762 2335778887765
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
...... .....|+.||+..+.+.+..+ .|+++..+.|
T Consensus 156 ~~~~~~--------------------------------------~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~P 197 (272)
T d1g0oa_ 156 GQAKAV--------------------------------------PKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAP 197 (272)
T ss_dssp GTCSSC--------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred cccccc--------------------------------------cchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEcc
Confidence 432110 112579999999999887665 7899999999
Q ss_pred ceeeccCCCCCC----CCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 310 SIVISTWKEPIP----GWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 310 ~~i~g~~~~~~~----g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
|.|-.+...... ..... .............. ...--+...+|||++++.++..... .-.|.+
T Consensus 198 G~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~PlgR~~~peevA~~v~fL~s~~s~-----~itG~~ 263 (272)
T d1g0oa_ 198 GGIKTDMYHAVCREYIPNGEN-LSNEEVDEYAAVQW--------SPLRRVGLPIDIARVVCFLASNDGG-----WVTGKV 263 (272)
T ss_dssp CCBSSHHHHHHGGGGSTTCTT-CCHHHHHHHHHHHS--------CTTCSCBCHHHHHHHHHHHHSGGGT-----TCCSCE
T ss_pred CCcCChHHHHHHHhhhhcccc-cchHHHHHHHHHcc--------CCCCCCcCHHHHHHHHHHHhCchhc-----CccCce
Confidence 998543110000 00000 00111111110000 0011367789999999988865432 224777
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
..+.++
T Consensus 264 i~vDGG 269 (272)
T d1g0oa_ 264 IGIDGG 269 (272)
T ss_dssp EEESTT
T ss_pred EeECCC
Confidence 777665
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.8e-13 Score=123.39 Aligned_cols=223 Identities=12% Similarity=0.046 Sum_probs=140.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||+++++.|+++|+ +|++..|++ +++++..+. ....... |+...+ .
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~---~Vi~~~r~~------~~l~~~~~~-------~~~~~~~~d~~~~~---~ 64 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGA---KVIATDINE------SKLQELEKY-------PGIQTRVLDVTKKK---Q 64 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH------HHHGGGGGS-------TTEEEEECCTTCHH---H
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCH------HHHHHHHhc-------cCCceeeeeccccc---c
Confidence 6799999999999999999999999976 688888863 233322111 0111111 554211 1
Q ss_pred HHHHHHHhcCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCccc
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKNIE 243 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~i~ 243 (545)
.+....-+.++|++||+||.... .+.++..+++|+.++..+.+.+... .+-.++|++||....-..
T Consensus 65 ~~~~~~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~---- 140 (245)
T d2ag5a1 65 IDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG---- 140 (245)
T ss_dssp HHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC----
T ss_pred ccccccccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCC----
Confidence 12233334589999999998642 3567889999999999998877541 244689999987542110
Q ss_pred ccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCC
Q psy16252 244 EIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKE 318 (545)
Q Consensus 244 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~ 318 (545)
......|+.+|+..+.+++..+ .|+++..+.||.|-.+...
T Consensus 141 ----------------------------------~~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~ 186 (245)
T d2ag5a1 141 ----------------------------------VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQ 186 (245)
T ss_dssp ----------------------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHH
T ss_pred ----------------------------------ccchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhH
Confidence 0112679999999999998775 7899999999998664211
Q ss_pred CCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 319 PIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 319 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.. ................. ...--+...+|+|+++..++..... ...+.++.+.++
T Consensus 187 ~~---~~~~~~~~~~~~~~~~~---------~pl~R~~~pedva~~v~fL~s~~s~-----~iTG~~i~VDGG 242 (245)
T d2ag5a1 187 ER---IQARGNPEEARNDFLKR---------QKTGRFATAEEIAMLCVYLASDESA-----YVTGNPVIIDGG 242 (245)
T ss_dssp HH---HHHSSSHHHHHHHHHHT---------CTTSSCEEHHHHHHHHHHHHSGGGT-----TCCSCEEEECTT
T ss_pred hh---hhhhhhhHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhChhhC-----CCcCceEEeCCC
Confidence 00 00000011111111111 1112356789999999998865432 224778887765
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.41 E-value=1.4e-11 Score=115.88 Aligned_cols=225 Identities=14% Similarity=0.015 Sum_probs=140.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLG 171 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lg 171 (545)
+.||+||||||+|.||+++++.|++.|+ +|++..|.... ..+.+.. .++....+ .+. |++
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~---~Vvi~~~~~~~--~~~~~~~-------~~~~~g~~~~~~~~D~~----- 66 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGA---SVVVNYGSSSK--AAEEVVA-------ELKKLGAQGVAIQADIS----- 66 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCHH--HHHHHHH-------HHHHTTCCEEEEECCTT-----
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEcCCChH--HHHHHHH-------HHHHcCCCceEecCCCC-----
Confidence 5799999999999999999999999976 56655554321 1122221 12222222 233 887
Q ss_pred CCHHHHHHHhc-------CccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccc
Q psy16252 172 LSPDDKRLVTS-------KVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSN 236 (545)
Q Consensus 172 l~~~~~~~l~~-------~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~ 236 (545)
+.++.+.+++ .+|++||+||... ..+.++..+++|+.+...+++.+... .+-.+.+.++|....
T Consensus 67 -~~~~v~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~ 145 (259)
T d1ja9a_ 67 -KPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAV 145 (259)
T ss_dssp -SHHHHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGT
T ss_pred -CHHHHHHHHHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccc
Confidence 5566655543 6899999999753 23567888999999999999988762 222456666655432
Q ss_pred cCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccce
Q psy16252 237 SYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSI 311 (545)
Q Consensus 237 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~ 311 (545)
.... .....|+.||+..+.+.+..+ .++++..+.||.
T Consensus 146 ~~~~--------------------------------------~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~ 187 (259)
T d1ja9a_ 146 MTGI--------------------------------------PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGG 187 (259)
T ss_dssp CCSC--------------------------------------CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECC
T ss_pred ccCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCC
Confidence 1100 112679999999888887765 689999999999
Q ss_pred eeccCC------CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 312 VISTWK------EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 312 i~g~~~------~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
|-.+.. ..... .. ......+...+.... ...-+...+|||++++.++..... .-.|.+
T Consensus 188 i~T~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~---------pl~R~g~p~eVa~~v~fL~S~~a~-----~itG~~ 251 (259)
T d1ja9a_ 188 VKTDMFDENSWHYAPGG-YK-GMPQEKIDEGLANMN---------PLKRIGYPADIGRAVSALCQEESE-----WINGQV 251 (259)
T ss_dssp BSSHHHHHHGGGTSTTC-CT-TCCHHHHHHHHHHTS---------TTSSCBCHHHHHHHHHHHHSGGGT-----TCCSCE
T ss_pred ccChhhhhhhhhhhhhh-cc-cCCHHHHHHHHHhCC---------CCCCCcCHHHHHHHHHHHhCchhc-----CCcCce
Confidence 854310 00000 00 011112222222211 112367789999999988865442 124777
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
..+.++
T Consensus 252 i~vDGG 257 (259)
T d1ja9a_ 252 IKLTGG 257 (259)
T ss_dssp EEESTT
T ss_pred EEeCCC
Confidence 777665
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.9e-12 Score=123.64 Aligned_cols=167 Identities=15% Similarity=0.110 Sum_probs=117.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC--ccc-CCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST--SKE-SAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~--~~~-Dl~~~~lgl~ 173 (545)
.|.||||||++.||+++++.|++.|..+..|+...|+... .+++.+... .+.....+ .+. |++ +
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~---~~~l~~~~~----~~~~~~~~~~~~~~Dv~------~ 68 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT---QGRLWEAAR----ALACPPGSLETLQLDVR------D 68 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGG---THHHHHHHH----HTTCCTTSEEEEECCTT------C
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhh---hHHHHHHHH----HHhccCCceEEEecccc------c
Confidence 4789999999999999999999998765555555554322 233333221 12222222 333 888 5
Q ss_pred HHHHHHHhc-----CccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccC
Q psy16252 174 PDDKRLVTS-----KVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSY 238 (545)
Q Consensus 174 ~~~~~~l~~-----~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~ 238 (545)
.+++..+++ .+|+++|+|+.... .+.++..+++|+.|+.++++++... .+-.++|++||.++...
T Consensus 69 ~~~~~~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~ 148 (285)
T d1jtva_ 69 SKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMG 148 (285)
T ss_dssp HHHHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSC
T ss_pred hHhhhhhhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCC
Confidence 667766654 57999999997532 3567888999999999988876431 24468999999976532
Q ss_pred CCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceee
Q psy16252 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVI 313 (545)
Q Consensus 239 ~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~ 313 (545)
. .....|+.||+..+.+.+..+ .|+++..+.||.|-
T Consensus 149 ~---------------------------------------~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~ 189 (285)
T d1jtva_ 149 L---------------------------------------PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVH 189 (285)
T ss_dssp C---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC
T ss_pred C---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCC
Confidence 1 112679999998888877665 68999999999985
Q ss_pred cc
Q psy16252 314 ST 315 (545)
Q Consensus 314 g~ 315 (545)
.+
T Consensus 190 T~ 191 (285)
T d1jtva_ 190 TA 191 (285)
T ss_dssp C-
T ss_pred Ch
Confidence 43
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.38 E-value=4.3e-12 Score=118.88 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=108.5
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~ 174 (545)
+.|+||||||++.||.+++++|+++|..+ .|++..|+.... +.+.+ ....+..++. |++ +.
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~-~Vi~~~R~~~~~---~~l~~--------~~~~~~~~~~~Dvs------~~ 63 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKA---TELKS--------IKDSRVHVLPLTVT------CD 63 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGC---HHHHT--------CCCTTEEEEECCTT------CH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCC-EEEEEeCCHHHH---HHHHH--------hhCCceEEEEEecC------CH
Confidence 45999999999999999999999987533 677778875322 11211 1111233444 888 45
Q ss_pred HHHHHHhc---------CccEEEEccccccc--------hHHHHHHHHHhHHHHHHHHHHHHH----c--c--------C
Q psy16252 175 DDKRLVTS---------KVNLVFHCAATLRF--------DEELKEAIRTNMCATQTMLDLAKQ----C--K--------N 223 (545)
Q Consensus 175 ~~~~~l~~---------~vd~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~----~--~--------~ 223 (545)
++++.+++ .+|++|||||.... .+.++..+++|+.|+..+.+.+.. . + .
T Consensus 64 ~~v~~~~~~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~ 143 (250)
T d1yo6a1 64 KSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVS 143 (250)
T ss_dssp HHHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccce
Confidence 55544432 38999999996421 245778899999999998877542 1 0 1
Q ss_pred CceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----
Q psy16252 224 LKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---- 299 (545)
Q Consensus 224 ~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---- 299 (545)
..+++.+|+.........- .. .......|+.||+....+.+..+
T Consensus 144 ~~~~i~~s~~~~~~~~~~~-~~-------------------------------~~~~~~aY~aSKaal~~l~~~la~el~ 191 (250)
T d1yo6a1 144 RAAVITISSGLGSITDNTS-GS-------------------------------AQFPVLAYRMSKAAINMFGRTLAVDLK 191 (250)
T ss_dssp TCEEEEECCGGGCSTTCCS-TT-------------------------------SSSCBHHHHHHHHHHHHHHHHHHHHTG
T ss_pred eccccccccccccccCCcc-cc-------------------------------cchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2456777766443221100 00 00011469999999888887664
Q ss_pred -cCCCEEEEccceee
Q psy16252 300 -QFFPVCIFRPSIVI 313 (545)
Q Consensus 300 -~~l~~~i~Rp~~i~ 313 (545)
.++++..+-||.|-
T Consensus 192 ~~gI~v~~i~PG~v~ 206 (250)
T d1yo6a1 192 DDNVLVVNFCPGWVQ 206 (250)
T ss_dssp GGTCEEEEEECCCC-
T ss_pred ccCeEEEEEecCCCC
Confidence 78999999999873
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.38 E-value=4.6e-12 Score=118.72 Aligned_cols=219 Identities=11% Similarity=0.067 Sum_probs=137.0
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH-
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD- 176 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~- 176 (545)
+++||||++.||+.+++.|++.|. +|++..|+.+.. +.++..... +.. |+++++ +.+.
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga---~V~i~~r~~~~~---~~~~~~~~~-----------~~~~dv~~~~---~~~~~ 61 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH---TVACHDESFKQK---DELEAFAET-----------YPQLKPMSEQ---EPAEL 61 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGSH---HHHHHHHHH-----------CTTSEECCCC---SHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHHHH---HHHHhhhCc-----------EEEeccCCHH---HHHHH
Confidence 689999999999999999999975 688777764321 222221111 111 665432 2222
Q ss_pred HH---HHhcCccEEEEccccc-c---c----hHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCcc
Q psy16252 177 KR---LVTSKVNLVFHCAATL-R---F----DEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKNI 242 (545)
Q Consensus 177 ~~---~l~~~vd~Vih~Aa~~-~---~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~i 242 (545)
++ +-+.++|++|||||.. . + .+.++..+++|+.++..+++.+... .+-.++|++||.......
T Consensus 62 ~~~~~~~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~--- 138 (252)
T d1zmta1 62 IEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW--- 138 (252)
T ss_dssp HHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC---
T ss_pred HHHHHHHcCCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccccc---
Confidence 22 2234799999999853 1 1 2567888899999999888876531 134689999998765332
Q ss_pred cccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCC
Q psy16252 243 EEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWK 317 (545)
Q Consensus 243 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~ 317 (545)
.....|+.||...+.+.+..+ .++++..+.||.|-.+..
T Consensus 139 ------------------------------------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~ 182 (252)
T d1zmta1 139 ------------------------------------KELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDS 182 (252)
T ss_dssp ------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTC
T ss_pred ------------------------------------ccccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcch
Confidence 112579999999998888765 789999999999876532
Q ss_pred CCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 318 EPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
..... .................. + .--+...+|||++++.++..... -..++++.+.++
T Consensus 183 ~~~~~-~~~~~~~~e~~~~~~~~~-p--------l~R~g~pedvA~~v~fL~S~~s~-----~iTG~~i~vdGG 241 (252)
T d1zmta1 183 PYFYP-TEPWKTNPEHVAHVKKVT-A--------LQRLGTQKELGELVAFLASGSCD-----YLTGQVFWLAGG 241 (252)
T ss_dssp CSSCB-HHHHTTCHHHHHHHHHHS-S--------SSSCBCHHHHHHHHHHHHTTSCG-----GGTTCEEEESTT
T ss_pred hhhhh-cccccCCHHHHHHHHhcC-C--------CCCCcCHHHHHHHHHHHhCchhc-----CCcCCeEEECCC
Confidence 21100 000000011112211110 0 11256789999999988754432 124788888776
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.37 E-value=2.1e-11 Score=117.07 Aligned_cols=223 Identities=11% Similarity=0.019 Sum_probs=138.8
Q ss_pred hhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCC
Q psy16252 94 FYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGL 172 (545)
Q Consensus 94 ~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl 172 (545)
.++||+++||||||.||++++++|++.|. +|++..|+.. ++.+...++.... ......+. |++
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga---~Vii~~r~~~------~l~~~~~~l~~~~-g~~~~~~~~D~~------ 85 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA---QCVIASRKMD------VLKATAEQISSQT-GNKVHAIQCDVR------ 85 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH------HHHHHHHHHHHHH-SSCEEEEECCTT------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCHH------HHHHHHHHHHHhc-CCceEEEEeccc------
Confidence 47899999999999999999999999975 7888888642 2222222111110 11122333 887
Q ss_pred CHHHHHHHh-------cCccEEEEccccccc-------hHHHHHHHHHhHHHHHHHHHHHH----HccCCceEEEEeccc
Q psy16252 173 SPDDKRLVT-------SKVNLVFHCAATLRF-------DEELKEAIRTNMCATQTMLDLAK----QCKNLKMFTYVSTAF 234 (545)
Q Consensus 173 ~~~~~~~l~-------~~vd~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~~~~v~vSS~~ 234 (545)
+.+.++.++ ..+|++||+||.... ...+...+.+|+.+...+...+. ....-..++.+||.+
T Consensus 86 ~~~~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~ 165 (294)
T d1w6ua_ 86 DPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIY 165 (294)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTH
T ss_pred ChHHHHHHhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccch
Confidence 455554443 378999999997532 24456677888888777655433 222445677777765
Q ss_pred cccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEcc
Q psy16252 235 SNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCIFRP 309 (545)
Q Consensus 235 v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp 309 (545)
..... .....|+.||...+.+.+..+ .|+++..+.|
T Consensus 166 ~~~~~---------------------------------------~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~P 206 (294)
T d1w6ua_ 166 AETGS---------------------------------------GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQP 206 (294)
T ss_dssp HHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hhhcc---------------------------------------cccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEcc
Confidence 43221 122579999999999998765 7899999999
Q ss_pred ceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEee
Q psy16252 310 SIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYV 389 (545)
Q Consensus 310 ~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~ 389 (545)
|.|-.+..... ............... + .--+...+|+|+++..++..... --.|.+..+.
T Consensus 207 G~i~T~~~~~~------~~~~~~~~~~~~~~~-p--------l~R~~~pediA~~v~fL~sd~s~-----~itG~~i~vD 266 (294)
T d1w6ua_ 207 GPIKTKGAFSR------LDPTGTFEKEMIGRI-P--------CGRLGTVEELANLAAFLCSDYAS-----WINGAVIKFD 266 (294)
T ss_dssp CCBCC------------CCTTSHHHHHHHTTC-T--------TSSCBCHHHHHHHHHHHTSGGGT-----TCCSCEEEES
T ss_pred Cccccchhhhc------cCCcHHHHHHHhhcC-C--------CCCCCCHHHHHHHHHHHhCchhc-----CCCCcEEEEC
Confidence 99966532111 000111222222211 1 11255689999999988765332 1257888888
Q ss_pred cC
Q psy16252 390 NS 391 (545)
Q Consensus 390 ~~ 391 (545)
++
T Consensus 267 GG 268 (294)
T d1w6ua_ 267 GG 268 (294)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.36 E-value=1.5e-11 Score=113.90 Aligned_cols=204 Identities=16% Similarity=0.146 Sum_probs=128.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC-CCCH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL-GLSP 174 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l-gl~~ 174 (545)
..+||||||+|.||++++++|++.|+ +|+++.|.+........ .+. |....+- ....
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~---~V~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 60 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGY---TVLNIDLSANDQADSNI------------------LVDGNKNWTEQEQSIL 60 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCCTTSSEEE------------------ECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCchhcccccc------------------eeccccCchhHHHHHH
Confidence 46789999999999999999999975 78888887653211000 000 1110000 0000
Q ss_pred HHHHHHh--cCccEEEEcccccc--------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccccCCCccc
Q psy16252 175 DDKRLVT--SKVNLVFHCAATLR--------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSNSYRKNIE 243 (545)
Q Consensus 175 ~~~~~l~--~~vd~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i~ 243 (545)
+...... ..+|++|||||... ..+.++..+++|+.++..+++++... .+-.++|++||.......
T Consensus 61 ~~~~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~---- 136 (235)
T d1ooea_ 61 EQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPT---- 136 (235)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC----
T ss_pred HHHHHHhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCc----
Confidence 1112222 36899999999632 12456777899999999999888763 122589999998765322
Q ss_pred ccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEEccceeeccC
Q psy16252 244 EIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIFRPSIVISTW 316 (545)
Q Consensus 244 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~Rp~~i~g~~ 316 (545)
.....|+.||+..+.+.+.++ .++++..+.||.+-.+
T Consensus 137 -----------------------------------~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~- 180 (235)
T d1ooea_ 137 -----------------------------------PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP- 180 (235)
T ss_dssp -----------------------------------TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH-
T ss_pred -----------------------------------ccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc-
Confidence 112689999999999998864 3567778888876332
Q ss_pred CCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeec
Q psy16252 317 KEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVN 390 (545)
Q Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~ 390 (545)
+...... ......+++.+++++.++..+..... +...+....+..
T Consensus 181 ----------------~~~~~~~---------~~~~~~~~~~~~va~~~~~~l~~~~~----~~~tG~~i~v~~ 225 (235)
T d1ooea_ 181 ----------------MNRKWMP---------NADHSSWTPLSFISEHLLKWTTETSS----RPSSGALLKITT 225 (235)
T ss_dssp ----------------HHHHHST---------TCCGGGCBCHHHHHHHHHHHHHCGGG----CCCTTCEEEEEE
T ss_pred ----------------chhhhCc---------CCccccCCCHHHHHHHHHHHhcCccc----cCCCceEEEEEe
Confidence 2222211 12344678999999998765554432 122466666643
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=8.5e-12 Score=117.47 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=118.2
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++|||||+.||++++++|.+.+.+..+|++..|+. +++++....+-......+...+. |++ +
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~------~~l~~~~~~l~~~~~~~~~~~~~~Dvs------~ 71 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE------SMLRQLKEELGAQQPDLKVVLAAADLG------T 71 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH------HHHHHHHHHHHHHCTTSEEEEEECCTT------S
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH------HHHHHHHHHHHhhcCCceEEEEEccCC------C
Confidence 6789999999999999999999986322334788888863 23333222111111111222333 888 5
Q ss_pred HHHHHHHhc-----------CccEEEEcccccc------c----hHHHHHHHHHhHHHHHHHHHHHHHc-cC----CceE
Q psy16252 174 PDDKRLVTS-----------KVNLVFHCAATLR------F----DEELKEAIRTNMCATQTMLDLAKQC-KN----LKMF 227 (545)
Q Consensus 174 ~~~~~~l~~-----------~vd~Vih~Aa~~~------~----~~~~~~~~~~Nv~gt~~ll~~a~~~-~~----~~~~ 227 (545)
+++++++++ .+|+++|+||... + .+.++..+++|+.|+..+.+.+... .. -.++
T Consensus 72 ~~~v~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~I 151 (259)
T d1oaaa_ 72 EAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTV 151 (259)
T ss_dssp HHHHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred HHHHHHHHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccc
Confidence 566665542 4679999998642 1 2467888999999999999988763 11 2479
Q ss_pred EEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc---cCCCE
Q psy16252 228 TYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---QFFPV 304 (545)
Q Consensus 228 v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---~~l~~ 304 (545)
|++||..+.... .....|+.||+..+.+.+.++ .++++
T Consensus 152 v~isS~~~~~~~---------------------------------------~~~~~Y~asKaal~~lt~~la~e~~gIrV 192 (259)
T d1oaaa_ 152 VNISSLCALQPY---------------------------------------KGWGLYCAGKAARDMLYQVLAAEEPSVRV 192 (259)
T ss_dssp EEECCGGGTSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred cccccccccCCC---------------------------------------ccchHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 999998765321 112689999999999988876 88999
Q ss_pred EEEccceeecc
Q psy16252 305 CIFRPSIVIST 315 (545)
Q Consensus 305 ~i~Rp~~i~g~ 315 (545)
..+.||.|-.+
T Consensus 193 n~v~PG~i~T~ 203 (259)
T d1oaaa_ 193 LSYAPGPLDND 203 (259)
T ss_dssp EEEECCSBSSH
T ss_pred EEEEcCCCCCH
Confidence 99999988654
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.34 E-value=6.6e-12 Score=117.46 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=111.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
.|+|||||||+.||.+++++|++...+..+|++..|+..... .+++.... ..+..++. |++++ +
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~---~~~~~~~~------~~~~~~~~~Dvs~~------~ 66 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK---ELEDLAKN------HSNIHILEIDLRNF------D 66 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH---HHHHHHHH------CTTEEEEECCTTCG------G
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH---HHHHHHhc------CCcEEEEEEEeccH------H
Confidence 378999999999999999999864333458999999865432 22221111 11233444 88854 3
Q ss_pred HHHHHh---------cCccEEEEcccccc----c----hHHHHHHHHHhHHHHHHHHHHHHHc--------------cCC
Q psy16252 176 DKRLVT---------SKVNLVFHCAATLR----F----DEELKEAIRTNMCATQTMLDLAKQC--------------KNL 224 (545)
Q Consensus 176 ~~~~l~---------~~vd~Vih~Aa~~~----~----~~~~~~~~~~Nv~gt~~ll~~a~~~--------------~~~ 224 (545)
+++.++ ..+|++|||||... + .+.++..+++|+.|+..+++.+... .+-
T Consensus 67 ~v~~~~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~ 146 (248)
T d1snya_ 67 AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGR 146 (248)
T ss_dssp GHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTT
T ss_pred HHHHHHhhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccc
Confidence 333222 35899999999642 1 2346778999999999888765431 123
Q ss_pred ceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----
Q psy16252 225 KMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----- 299 (545)
Q Consensus 225 ~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----- 299 (545)
.++|++||....-...+ ......|+.||+....+.+..+
T Consensus 147 g~ii~i~S~~g~~~~~~------------------------------------~~~~~~Y~aSKaal~~lt~~la~e~~~ 190 (248)
T d1snya_ 147 AAIINMSSILGSIQGNT------------------------------------DGGMYAYRTSKSALNAATKSLSVDLYP 190 (248)
T ss_dssp CEEEEECCGGGCSTTCC------------------------------------SCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cccccccccccccCCCC------------------------------------CCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 67899999764321100 0111479999998888877654
Q ss_pred cCCCEEEEccceeec
Q psy16252 300 QFFPVCIFRPSIVIS 314 (545)
Q Consensus 300 ~~l~~~i~Rp~~i~g 314 (545)
.++++..+.||.|-.
T Consensus 191 ~gI~vn~v~PG~v~T 205 (248)
T d1snya_ 191 QRIMCVSLHPGWVKT 205 (248)
T ss_dssp GTCEEEEECCCSBCS
T ss_pred CCeEEEEcCCCcccC
Confidence 689999999998844
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=3e-11 Score=112.91 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=110.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+++||||++.||.+++++|++.|. +|++..|+.... +.+.+. +.. ...... |+. +
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G~---~V~~~~r~~~~~---~~~~~~-------l~~-~~~~~~~~~~------~ 62 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQGA---SAVLLDLPNSGG---EAQAKK-------LGN-NCVFAPADVT------S 62 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTSSH---HHHHHH-------HCT-TEEEEECCTT------C
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChHHH---HHHHHH-------hCC-Cccccccccc------c
Confidence 5799999999999999999999999976 688888875431 111111 100 000111 333 2
Q ss_pred HHHHHH-------HhcCccEEEEcccccc-------------chHHHHHHHHHhHHHHHHHHHHHHHc---------cCC
Q psy16252 174 PDDKRL-------VTSKVNLVFHCAATLR-------------FDEELKEAIRTNMCATQTMLDLAKQC---------KNL 224 (545)
Q Consensus 174 ~~~~~~-------l~~~vd~Vih~Aa~~~-------------~~~~~~~~~~~Nv~gt~~ll~~a~~~---------~~~ 224 (545)
....+. .....|.++++++... ..+.++..+++|+.++.++.+++... .+-
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (248)
T d2o23a1 63 EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQR 142 (248)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCC
T ss_pred cccccccccccccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCc
Confidence 222222 2235788888766532 12567888999999999999988652 122
Q ss_pred ceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----
Q psy16252 225 KMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA----- 299 (545)
Q Consensus 225 ~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~----- 299 (545)
.++|++||.++.... .....|+.||+..+.+.+..+
T Consensus 143 G~Ii~isS~~~~~~~---------------------------------------~~~~~Y~asKaal~~lt~~la~e~~~ 183 (248)
T d2o23a1 143 GVIINTASVAAFEGQ---------------------------------------VGQAAYSASKGGIVGMTLPIARDLAP 183 (248)
T ss_dssp EEEEEECCTHHHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred eEEEEecchhhccCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 479999999765321 112679999999999998775
Q ss_pred cCCCEEEEccceeecc
Q psy16252 300 QFFPVCIFRPSIVIST 315 (545)
Q Consensus 300 ~~l~~~i~Rp~~i~g~ 315 (545)
.|+++..+.||.|..+
T Consensus 184 ~gIrvN~I~PG~i~T~ 199 (248)
T d2o23a1 184 IGIRVMTIAPGLFGTP 199 (248)
T ss_dssp GTEEEEEEEECCBCCC
T ss_pred cCcceeeeccCceecc
Confidence 6899999999998654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=3.1e-11 Score=114.20 Aligned_cols=198 Identities=12% Similarity=0.106 Sum_probs=127.6
Q ss_pred hhhcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 93 DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 93 ~~~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
+.++||+++|||||+.||++++++|++.|. +|++..|+. +++++....+.... ......+. |+.
T Consensus 10 ~~L~GK~alITGassGIG~aiA~~la~~G~---~Vil~~r~~------~~l~~~~~~~~~~~-~~~~~~~~~d~~----- 74 (269)
T d1xu9a_ 10 EMLQGKKVIVTGASKGIGREMAYHLAKMGA---HVVVTARSK------ETLQKVVSHCLELG-AASAHYIAGTME----- 74 (269)
T ss_dssp GGGTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHHHHHHT-CSEEEEEECCTT-----
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH------HHHHHHHHHHhhhh-cccchhhhhhhh-----
Confidence 447899999999999999999999999975 788888863 34443322210000 00111111 544
Q ss_pred CCHHHHHH-------HhcCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc--cCCceEEEEecccc
Q psy16252 172 LSPDDKRL-------VTSKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC--KNLKMFTYVSTAFS 235 (545)
Q Consensus 172 l~~~~~~~-------l~~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~~~~~v~vSS~~v 235 (545)
+.+.... ....+|+++|+|+... ..+.++..+++|+.|+..+.+.+... .+-.++|++||.++
T Consensus 75 -~~~~~~~~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~ 153 (269)
T d1xu9a_ 75 -DMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAG 153 (269)
T ss_dssp -CHHHHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred -hHHHHHHHHHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchh
Confidence 2233322 2347899999998753 23556788899999988888776531 11258999999876
Q ss_pred ccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-------cCCCEEEEc
Q psy16252 236 NSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-------QFFPVCIFR 308 (545)
Q Consensus 236 ~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-------~~l~~~i~R 308 (545)
.... .....|+.||+..+.+.+..+ .++++..+.
T Consensus 154 ~~~~---------------------------------------p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~ 194 (269)
T d1xu9a_ 154 KVAY---------------------------------------PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCV 194 (269)
T ss_dssp TSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred cCCC---------------------------------------CCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 4321 112689999999888887664 257888899
Q ss_pred cceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccc
Q psy16252 309 PSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWN 371 (545)
Q Consensus 309 p~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 371 (545)
||.|-.+ +......+ .......+.+++|+.++.....
T Consensus 195 PG~v~T~-----------------~~~~~~~~---------~~~~~~~~~e~~a~~i~~~~~~ 231 (269)
T d1xu9a_ 195 LGLIDTE-----------------TAMKAVSG---------IVHMQAAPKEECALEIIKGGAL 231 (269)
T ss_dssp ECCBCCH-----------------HHHHHSCG---------GGGGGCBCHHHHHHHHHHHHHT
T ss_pred cCcCCCc-----------------HHHHhccC---------CccccCCCHHHHHHHHHHHhhc
Confidence 9987332 22222221 1223456788999998876544
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=7.2e-11 Score=110.98 Aligned_cols=220 Identities=13% Similarity=0.039 Sum_probs=137.6
Q ss_pred hhcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l 170 (545)
+++||+||||||+| .||+++++.|++.|. +|++..|+++ ..+++++.... ........ |+.
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~---~V~i~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~---- 65 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA---ELAFTYQNDK---LKGRVEEFAAQ------LGSDIVLQCDVA---- 65 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC---EEEEEESSTT---THHHHHHHHHH------TTCCCEEECCTT----
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCC---EEEEEeCCHH---HHHHHHHHHhh------cCCcceeecccc----
Confidence 36799999999999 788999999999976 6777788743 23333332221 00111222 444
Q ss_pred CCCHHHHHHHh-------cCccEEEEccccccc------------hHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEE
Q psy16252 171 GLSPDDKRLVT-------SKVNLVFHCAATLRF------------DEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYV 230 (545)
Q Consensus 171 gl~~~~~~~l~-------~~vd~Vih~Aa~~~~------------~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~v 230 (545)
+..+..... ...|++||+|+.... .+.+.....+|+.+...+.+.+... .+-..++++
T Consensus 66 --~~~~~~~~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~i 143 (258)
T d1qsga_ 66 --EDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTL 143 (258)
T ss_dssp --CHHHHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --hHHHHHHHHHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEe
Confidence 333333333 367999999987422 1234556677888888888877653 122468888
Q ss_pred eccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEE
Q psy16252 231 STAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVC 305 (545)
Q Consensus 231 SS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~ 305 (545)
||..+.... +....|+.||...+.+.+..+ .++++.
T Consensus 144 ss~~~~~~~---------------------------------------~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN 184 (258)
T d1qsga_ 144 SYLGAERAI---------------------------------------PNYNVMGLAKASLEANVRYMANAMGPEGVRVN 184 (258)
T ss_dssp ECGGGTSBC---------------------------------------TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred cchhhccCC---------------------------------------CCcHHHHHHHHHHHHHHHHHHHHhCccCceee
Confidence 887653221 112579999999999998875 689999
Q ss_pred EEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCE
Q psy16252 306 IFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPI 385 (545)
Q Consensus 306 i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~v 385 (545)
.++||.|..+.... ............. ..+ .--+...+|+|++++.++..... .-.+.+
T Consensus 185 ~I~PG~i~T~~~~~-------~~~~~~~~~~~~~-~~p--------l~R~~~peeia~~v~fL~s~~s~-----~itG~~ 243 (258)
T d1qsga_ 185 AISAGPIRTLAASG-------IKDFRKMLAHCEA-VTP--------IRRTVTIEDVGNSAAFLCSDLSA-----GISGEV 243 (258)
T ss_dssp EEEECCCCCTTGGG-------STTHHHHHHHHHH-HST--------TSSCCCHHHHHHHHHHHTSGGGT-----TCCSCE
T ss_pred cccccccccccccc-------cchhhhHHHHHHh-CCC--------CCCCcCHHHHHHHHHHHhCchhc-----CccCce
Confidence 99999997653221 1111222222211 111 11256789999999988865432 235778
Q ss_pred EEeecC
Q psy16252 386 YNYVNS 391 (545)
Q Consensus 386 y~i~~~ 391 (545)
+.+.++
T Consensus 244 i~vDGG 249 (258)
T d1qsga_ 244 VHVDGG 249 (258)
T ss_dssp EEESTT
T ss_pred EEECcC
Confidence 887766
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.21 E-value=2.5e-10 Score=108.22 Aligned_cols=220 Identities=12% Similarity=0.044 Sum_probs=129.2
Q ss_pred hhcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l 170 (545)
+++||++|||||+| .||.++++.|++.|. +|++..|++. ..+++.++... . ....+.. |++
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga---~V~i~~r~~~---~~~~~~~l~~~----~--~~~~~~~~d~~---- 65 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA---TLAFTYLNES---LEKRVRPIAQE----L--NSPYVYELDVS---- 65 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC---EEEEEESSTT---THHHHHHHHHH----T--TCCCEEECCTT----
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH---HHHHHHHHHhh----C--CceeEeeeccc----
Confidence 36799999999987 799999999999876 6888888743 23333332221 0 1112222 665
Q ss_pred CCCHHHHHHHh-------cCccEEEEccccccch--------HHHH---HHHHHhHHHHHHHHHHHHHccCCceEEEEe-
Q psy16252 171 GLSPDDKRLVT-------SKVNLVFHCAATLRFD--------EELK---EAIRTNMCATQTMLDLAKQCKNLKMFTYVS- 231 (545)
Q Consensus 171 gl~~~~~~~l~-------~~vd~Vih~Aa~~~~~--------~~~~---~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vS- 231 (545)
+.++..+++ ..+|++||+++..... .... ....++..+...+........+....|.++
T Consensus 66 --~~~~~~~~~~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 143 (274)
T d2pd4a1 66 --KEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS 143 (274)
T ss_dssp --CHHHHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --chhhHHHHHHHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeec
Confidence 444444443 4789999999974211 1112 222333334444444444332333444444
Q ss_pred ccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEE
Q psy16252 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPVCI 306 (545)
Q Consensus 232 S~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~~i 306 (545)
+.+..... .....|+.+|...+.+.+..+ .|+++..
T Consensus 144 ~~~~~~~~---------------------------------------~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~ 184 (274)
T d2pd4a1 144 YLGSTKYM---------------------------------------AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNA 184 (274)
T ss_dssp CGGGTSBC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred cccccccc---------------------------------------ccchhhhHHHHHHHHHHHhhHHHhcCcCceecc
Confidence 43333211 223689999999999987764 7899999
Q ss_pred EccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEE
Q psy16252 307 FRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386 (545)
Q Consensus 307 ~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy 386 (545)
+.||.+..+.... .............. ....-+...+|||++++.++..... .-.+.++
T Consensus 185 I~PG~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~r~~~pedIA~~v~fL~S~~s~-----~itG~~i 243 (274)
T d2pd4a1 185 LSAGPIRTLASSG-------IADFRMILKWNEIN---------APLRKNVSLEEVGNAGMYLLSSLSS-----GVSGEVH 243 (274)
T ss_dssp EEECCCCCTTGGG-------STTHHHHHHHHHHH---------STTSSCCCHHHHHHHHHHHHSGGGT-----TCCSCEE
T ss_pred cccCcccCccccc-------cCchHHHHHHHhhh---------hhccCCcCHHHHHHHHHHHhChhhC-----CCcCceE
Confidence 9999886643221 11111111111110 1122457899999999988765432 2357888
Q ss_pred EeecC
Q psy16252 387 NYVNS 391 (545)
Q Consensus 387 ~i~~~ 391 (545)
.+.++
T Consensus 244 ~vDGG 248 (274)
T d2pd4a1 244 FVDAG 248 (274)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 88876
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.2e-10 Score=110.55 Aligned_cols=122 Identities=17% Similarity=0.219 Sum_probs=85.0
Q ss_pred CcEE-EEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCCccc-CCCCCCCCC
Q psy16252 97 GAEI-LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CSTSKE-SAQAPDLGL 172 (545)
Q Consensus 97 ~~~V-lITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~~~~-Dl~~~~lgl 172 (545)
||+| +||||++.||.+++++|++.+ ..+|++..|+. +++++... .++.. ...++. |++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~--g~~Vi~~~r~~------~~~~~~~~----~l~~~~~~~~~~~~Dvs------ 63 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLF--SGDVVLTARDV------TRGQAAVQ----QLQAEGLSPRFHQLDID------ 63 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHS--SSEEEEEESSH------HHHHHHHH----HHHHTTCCCEEEECCTT------
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhC--CCEEEEEECCH------HHHHHHHH----HHHhcCCcEEEEEEecC------
Confidence 5655 899999999999999999872 23788888874 23333222 22222 233444 888
Q ss_pred CHHHHHHHh-------cCccEEEEcccccc-------chHHHHHHHHHhHHHHHHHHHHHHHc-cCCceEEEEeccccc
Q psy16252 173 SPDDKRLVT-------SKVNLVFHCAATLR-------FDEELKEAIRTNMCATQTMLDLAKQC-KNLKMFTYVSTAFSN 236 (545)
Q Consensus 173 ~~~~~~~l~-------~~vd~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~~~~v~vSS~~v~ 236 (545)
+.++.++++ ..+|++|||||... ..+.++..+++|+.|+..+++.+... ..-.++|++||....
T Consensus 64 ~~~sv~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~ 142 (275)
T d1wmaa1 64 DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSV 142 (275)
T ss_dssp CHHHHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccee
Confidence 555655544 37899999999753 23456778999999999999988652 122589999998653
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.14 E-value=4e-10 Score=104.54 Aligned_cols=203 Identities=14% Similarity=0.048 Sum_probs=128.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPD 175 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~ 175 (545)
+|++|||||++.||+++++.|++.|. +|++..|++..... ...+ |++. ..
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga---~V~i~~~~~~~~~~--------------------~~~~~d~~~------~~ 51 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGY---RVVVLDLRREGEDL--------------------IYVEGDVTR------EE 51 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESSCCSSSS--------------------EEEECCTTC------HH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCcccccc--------------------eEeeccccc------hh
Confidence 48999999999999999999999976 68888887543211 0011 4442 22
Q ss_pred HHHHHh------cCccEEEEcccccc-----------chHHHHHHHHHhHHHHHHHHHHHHHc---------cCCceEEE
Q psy16252 176 DKRLVT------SKVNLVFHCAATLR-----------FDEELKEAIRTNMCATQTMLDLAKQC---------KNLKMFTY 229 (545)
Q Consensus 176 ~~~~l~------~~vd~Vih~Aa~~~-----------~~~~~~~~~~~Nv~gt~~ll~~a~~~---------~~~~~~v~ 229 (545)
....+. ...+.++++++... ..+.++..+++|+.+...+++.+... .+-.++|+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~ 131 (241)
T d1uaya_ 52 DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVN 131 (241)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEE
T ss_pred hhHHHHHhhhccccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeee
Confidence 222221 23445555544321 12456778899999988888766542 12358999
Q ss_pred EeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCE
Q psy16252 230 VSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFPV 304 (545)
Q Consensus 230 vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~~ 304 (545)
+||..+.... .....|+.||+..+.+.+..+ .|+++
T Consensus 132 isS~~~~~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~ela~~gIrV 172 (241)
T d1uaya_ 132 TASVAAFEGQ---------------------------------------IGQAAYAASKGGVVALTLPAARELAGWGIRV 172 (241)
T ss_dssp ECCTHHHHCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred ecchhhccCC---------------------------------------CCchhhHHHHHHHHHHHHHHHHHHhhcCCce
Confidence 9998764321 122689999999999988775 68999
Q ss_pred EEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCC
Q psy16252 305 CIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLP 384 (545)
Q Consensus 305 ~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~ 384 (545)
..+.||.|-.+.... .. ........... + . .--+...+|||++++.++....- .|+
T Consensus 173 N~V~PG~i~T~~~~~-------~~--~~~~~~~~~~~-~---~----~~R~g~pedvA~~v~fL~s~~~i-------TG~ 228 (241)
T d1uaya_ 173 VTVAPGLFDTPLLQG-------LP--EKAKASLAAQV-P---F----PPRLGRPEEYAALVLHILENPML-------NGE 228 (241)
T ss_dssp EEEEECSCSSHHHHT-------SC--HHHHHHHHTTC-C---S----SCSCCCHHHHHHHHHHHHHCTTC-------CSC
T ss_pred eeecCCcccccccch-------hh--hhHHHHHHhcC-C---C----CCCCcCHHHHHHHHHHHHhCCCC-------CCC
Confidence 999999986542111 11 11111222111 1 0 01245689999999888764332 578
Q ss_pred EEEeecC
Q psy16252 385 IYNYVNS 391 (545)
Q Consensus 385 vy~i~~~ 391 (545)
+..+.++
T Consensus 229 ~i~VDGG 235 (241)
T d1uaya_ 229 VVRLDGA 235 (241)
T ss_dssp EEEESTT
T ss_pred EEEECCc
Confidence 8888765
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.07 E-value=6.5e-10 Score=104.87 Aligned_cols=227 Identities=13% Similarity=-0.012 Sum_probs=128.9
Q ss_pred hhcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCC
Q psy16252 94 FYEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~l 170 (545)
+++||++|||||+| .||.+++++|.+.|. +|++..|+... ..+++.+ .+ ......+. |++
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga---~Vil~~~~~~~--~~~~~~~-------~~-~~~~~~~~~dv~---- 65 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA---QLVLTGFDRLR--LIQRITD-------RL-PAKAPLLELDVQ---- 65 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC---EEEEEECSCHH--HHHHHHT-------TS-SSCCCEEECCTT----
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC---EEEEEeCChHH--HHHHHHH-------Hc-CCceeeEeeecc----
Confidence 36799999999765 599999999999975 67777776421 1111211 11 11222333 777
Q ss_pred CCCHHHHHHHh----------cCccEEEEccccccc------------hHHHHHHHHHhHHHHHHHHHHHHHccCCceEE
Q psy16252 171 GLSPDDKRLVT----------SKVNLVFHCAATLRF------------DEELKEAIRTNMCATQTMLDLAKQCKNLKMFT 228 (545)
Q Consensus 171 gl~~~~~~~l~----------~~vd~Vih~Aa~~~~------------~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v 228 (545)
++++...++ ..+|+++|+|+.... ...+...+.+|+.+.....+.+....+-...+
T Consensus 66 --~~~~~~~~~~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 143 (268)
T d2h7ma1 66 --NEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSI 143 (268)
T ss_dssp --CHHHHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEE
T ss_pred --cccccccccchhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccccc
Confidence 343333332 247999999995421 12344556777777777777666543333445
Q ss_pred EEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCC
Q psy16252 229 YVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA-----QFFP 303 (545)
Q Consensus 229 ~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~-----~~l~ 303 (545)
.++|....... +....|+.+|...+.+.+..+ .+++
T Consensus 144 ~~~s~~~~~~~---------------------------------------p~~~~y~~sK~a~~~ltr~lA~e~~~~gIr 184 (268)
T d2h7ma1 144 VGMDFDPSRAM---------------------------------------PAYNWMTVAKSALESVNRFVAREAGKYGVR 184 (268)
T ss_dssp EEEECCCSSCC---------------------------------------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred ccccccccccC---------------------------------------cccchhhccccchhhccccchhhhhccCCc
Confidence 45444332211 123689999999999998775 6899
Q ss_pred EEEEccceeeccCCCCCCCCccCccc---hHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCC
Q psy16252 304 VCIFRPSIVISTWKEPIPGWIDNLYG---PTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDP 380 (545)
Q Consensus 304 ~~i~Rp~~i~g~~~~~~~g~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~ 380 (545)
+..+.||.|-.+....+.+....... ...+....... .-...-+...+|+|++++.++..... .
T Consensus 185 VN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~pl~rr~~~p~dva~~v~fL~Sd~a~-----~ 251 (268)
T d2h7ma1 185 SNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQR--------APIGWNMKDATPVAKTVCALLSDWLP-----A 251 (268)
T ss_dssp EEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHH--------CTTCCCTTCCHHHHHHHHHHHSSSCT-----T
T ss_pred ceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhc--------CCCCCCCCCHHHHHHHHHHHhCchhc-----C
Confidence 99999999865421111000000000 00001111000 00112356689999999988854332 1
Q ss_pred CCCCEEEeecC
Q psy16252 381 SCLPIYNYVNS 391 (545)
Q Consensus 381 ~~~~vy~i~~~ 391 (545)
-.+.++.+.++
T Consensus 252 iTG~~i~vDGG 262 (268)
T d2h7ma1 252 TTGDIIYADGG 262 (268)
T ss_dssp CCSEEEEESTT
T ss_pred ccCCEEEECcC
Confidence 24677777765
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.00 E-value=2.1e-08 Score=94.07 Aligned_cols=220 Identities=13% Similarity=0.080 Sum_probs=127.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
.++|||||++.||++++++|+++|. +|+...|+... ..+++.+.+.. .......... |+....- ..+.
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~---~Vvi~~r~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~ 70 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGF---RVVVHYRHSEG--AAQRLVAELNA----ARAGSAVLCKGDLSLSSS--LLDC 70 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHH--HHHHHHHHHHH----HSTTCEEEEECCCSSSTT--HHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCchH--HHHHHHHHHHh----hcCCceEEEecccccchh--HHHH
Confidence 4689999999999999999999976 68888887431 11222221111 1011111111 2221110 2233
Q ss_pred HHHH-------hcCccEEEEccccccc------------------hHHHHHHHHHhHHHHHHHHHHHHHcc--------C
Q psy16252 177 KRLV-------TSKVNLVFHCAATLRF------------------DEELKEAIRTNMCATQTMLDLAKQCK--------N 223 (545)
Q Consensus 177 ~~~l-------~~~vd~Vih~Aa~~~~------------------~~~~~~~~~~Nv~gt~~ll~~a~~~~--------~ 223 (545)
..++ +.++|++||+||.... ..........|..+.......+.... .
T Consensus 71 ~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
T d1mxha_ 71 CEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSR 150 (266)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CC
T ss_pred HHHHHHHHHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccc
Confidence 3333 2479999999996421 12234455667777666666555421 1
Q ss_pred CceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHHHHHHHhc----
Q psy16252 224 LKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA---- 299 (545)
Q Consensus 224 ~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~---- 299 (545)
...++.+|+....... .....|+.||+..+.+.+..+
T Consensus 151 ~~~~~~~~~~~~~~~~---------------------------------------~~~~~Y~asKaal~~lt~~lA~e~~ 191 (266)
T d1mxha_ 151 NLSVVNLCDAMTDLPL---------------------------------------PGFCVYTMAKHALGGLTRAAALELA 191 (266)
T ss_dssp CEEEEEECCGGGGSCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cccchhhhhccccccC---------------------------------------cchhhhhhhHHHHhhhHHHHHHHhC
Confidence 2345555555433211 123689999999999988775
Q ss_pred -cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCC
Q psy16252 300 -QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHK 378 (545)
Q Consensus 300 -~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~ 378 (545)
.|+++..+.||.|..+... +........... + ...-+...+|||++++.++.....
T Consensus 192 ~~gIrVN~I~PG~i~t~~~~-----------~~~~~~~~~~~~-p-------l~r~~~~peeva~~v~fL~s~~s~---- 248 (266)
T d1mxha_ 192 PRHIRVNAVAPGLSLLPPAM-----------PQETQEEYRRKV-P-------LGQSEASAAQIADAIAFLVSKDAG---- 248 (266)
T ss_dssp GGTEEEEEEEESSBSCCSSS-----------CHHHHHHHHTTC-T-------TTSCCBCHHHHHHHHHHHHSGGGT----
T ss_pred ccCcEEEEeccCcEeccccC-----------CHHHHHHHHhcC-C-------CCCCCCCHHHHHHHHHHHhCchhC----
Confidence 6899999999987543211 122323222211 1 011235789999999998875432
Q ss_pred CCCCCCEEEeecC
Q psy16252 379 DPSCLPIYNYVNS 391 (545)
Q Consensus 379 ~~~~~~vy~i~~~ 391 (545)
--.|+++++.++
T Consensus 249 -~itG~~i~vDGG 260 (266)
T d1mxha_ 249 -YITGTTLKVDGG 260 (266)
T ss_dssp -TCCSCEEEESTT
T ss_pred -CccCCeEEECcc
Confidence 124788888776
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=98.99 E-value=2.4e-08 Score=94.61 Aligned_cols=220 Identities=13% Similarity=0.071 Sum_probs=130.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHh----hhhc-------CCCc--cc-
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIS----LKFT-------CSTS--KE- 163 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~----~~~~-------~~~~--~~- 163 (545)
..++||||++.||+++++.|++.|. +|++..|.... ..+.+...+...... ++.+ .... ..
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga---~V~i~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 77 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGY---AVCLHYHRSAA--EANALSATLNARRPNSAITVQADLSNVATAPVSGADGSA 77 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCHH--HHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCCHH--HHHHHHHHHHhhcCCceEEEEeecccccccccccccccc
Confidence 4689999999999999999999975 56666554321 122222222110000 0000 0000 00
Q ss_pred CCCCCCCCCCHHHHHHHh-------cCccEEEEccccccch---------------------HHHHHHHHHhHHHHHHHH
Q psy16252 164 SAQAPDLGLSPDDKRLVT-------SKVNLVFHCAATLRFD---------------------EELKEAIRTNMCATQTML 215 (545)
Q Consensus 164 Dl~~~~lgl~~~~~~~l~-------~~vd~Vih~Aa~~~~~---------------------~~~~~~~~~Nv~gt~~ll 215 (545)
|++ +.++.++++ .++|++|||||..... ..+...+.+|+.++..+.
T Consensus 78 dv~------~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 151 (284)
T d1e7wa_ 78 PVT------LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 151 (284)
T ss_dssp CBC------HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHH
T ss_pred cCC------CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeee
Confidence 333 345555544 4789999999975210 112346788999999988
Q ss_pred HHHHHc---------cCCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHH
Q psy16252 216 DLAKQC---------KNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTL 286 (545)
Q Consensus 216 ~~a~~~---------~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 286 (545)
+.+... .+..+++++||....... .....|+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~ii~~~s~~~~~~~---------------------------------------~~~~~Y~a 192 (284)
T d1e7wa_ 152 KAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL---------------------------------------LGYTIYTM 192 (284)
T ss_dssp HHHHHHHHTSCGGGSCSCEEEEEECCTTTTSCC---------------------------------------TTCHHHHH
T ss_pred ccccchhhhhHHHhcCCCCcccccccccccCCc---------------------------------------cceeeecc
Confidence 876542 123467777776543221 11257999
Q ss_pred HHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHH
Q psy16252 287 TKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLV 361 (545)
Q Consensus 287 sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddv 361 (545)
||...+.+.+..+ .|+++..+.||.+-... .. +............ . .--+...+|+
T Consensus 193 sKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~---------~~--~~~~~~~~~~~~p----l----~~R~~~peei 253 (284)
T d1e7wa_ 193 AKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD---------DM--PPAVWEGHRSKVP----L----YQRDSSAAEV 253 (284)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG---------GS--CHHHHHHHHTTCT----T----TTSCBCHHHH
T ss_pred ccccchhhhHHHHHHhCCccccccccccccccccc---------cC--CHHHHHHHHhcCC----C----CCCCCCHHHH
Confidence 9999999998775 68999999999642211 11 1233333332211 0 1125678999
Q ss_pred HHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 362 VNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 362 a~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
|++++.++..... .-.|+++.+.++
T Consensus 254 A~~v~fL~S~~s~-----~itG~~i~VDGG 278 (284)
T d1e7wa_ 254 SDVVIFLCSSKAK-----YITGTCVKVDGG 278 (284)
T ss_dssp HHHHHHHHSGGGT-----TCCSCEEEESTT
T ss_pred HHHHHHHhCchhc-----CccCCeEEECcC
Confidence 9999988764432 224788888776
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=98.99 E-value=1.3e-08 Score=97.28 Aligned_cols=231 Identities=12% Similarity=-0.061 Sum_probs=131.1
Q ss_pred hcCcEEEEecccc--ccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhc--CCC---ccc-C--
Q psy16252 95 YEGAEILMTGATG--FLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFT--CST---SKE-S-- 164 (545)
Q Consensus 95 ~~~~~VlITGatG--flG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~--~~~---~~~-D-- 164 (545)
++||++|||||+| .||.++++.|++.|. +|++..|++.............. ....+... ..+ ... |
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~Ga---~Vvi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGA---EILVGTWVPALNIFETSLRRGKF-DQSRVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEEEHHHHHHHHHHHHTTTT-TGGGBCTTSSBCCEEEEEEECTT
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCC---EEEEEeCchhhhhhHHHHHHhhh-hhhhhhhhhhhhhhhhhhhhhhh
Confidence 5799999999987 899999999999975 67777775321110000000000 00000000 000 000 1
Q ss_pred C------------------CCCCCCCCHHH-H---HHHhcCccEEEEcccccc-----c----hHHHHHHHHHhHHHHHH
Q psy16252 165 A------------------QAPDLGLSPDD-K---RLVTSKVNLVFHCAATLR-----F----DEELKEAIRTNMCATQT 213 (545)
Q Consensus 165 l------------------~~~~lgl~~~~-~---~~l~~~vd~Vih~Aa~~~-----~----~~~~~~~~~~Nv~gt~~ 213 (545)
+ .... +.+. . .+-+.++|++||+||... + .+.+...+++|+.++..
T Consensus 82 ~~~~~~~~~dv~~~~~~~~~~~~---~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~ 158 (297)
T d1d7oa_ 82 FDNPEDVPEDVKANKRYAGSSNW---TVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVS 158 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCC---SHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred ccccccchhhhhhhhhhhhccHH---HHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhh
Confidence 1 1000 1111 1 222347999999998632 1 24577888999999999
Q ss_pred HHHHHHHccC-CceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHH
Q psy16252 214 MLDLAKQCKN-LKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAE 292 (545)
Q Consensus 214 ll~~a~~~~~-~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE 292 (545)
+++.+..... -...+.+|+........ .....|+.+|...+
T Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------------------------------------~~~~~y~~aKaa~~ 200 (297)
T d1d7oa_ 159 LLSHFLPIMNPGGASISLTYIASERIIP--------------------------------------GYGGGMSSAKAALE 200 (297)
T ss_dssp HHHHHGGGEEEEEEEEEEECGGGTSCCT--------------------------------------TCTTTHHHHHHHHH
T ss_pred hhhHHHHHhhcCCcceeeeehhhccccc--------------------------------------ccccceeccccccc
Confidence 9998765311 12345555554332110 12257999999888
Q ss_pred HHHHHhc------cCCCEEEEccceeeccCCCCCCCCccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHH
Q psy16252 293 QLLCEEA------QFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALI 366 (545)
Q Consensus 293 ~~~~~~~------~~l~~~i~Rp~~i~g~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~ 366 (545)
.+.+... .++++..+.||.|..+.... ......+........ + .--+...+|||++++
T Consensus 201 ~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~~~-------~~~~~~~~~~~~~~~-P--------lgR~~~peevA~~v~ 264 (297)
T d1d7oa_ 201 SDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKA-------IGFIDTMIEYSYNNA-P--------IQKTLTADEVGNAAA 264 (297)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSC-------CSHHHHHHHHHHHHS-S--------SCCCBCHHHHHHHHH
T ss_pred ccccccchhccccceEEecccccccccchhhhh-------ccCCHHHHHHHHhCC-C--------CCCCCCHHHHHHHHH
Confidence 8776542 58999999999996653221 112223333222211 1 112567899999999
Q ss_pred hcccccccccCCCCCCCCEEEeecC
Q psy16252 367 CAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
.++..... .-.++++.+.++
T Consensus 265 fL~S~~a~-----~itGq~i~vDGG 284 (297)
T d1d7oa_ 265 FLVSPLAS-----AITGATIYVDNG 284 (297)
T ss_dssp HHTSGGGT-----TCCSCEEEESTT
T ss_pred HHhCchhc-----CCcCceEEECcC
Confidence 88865332 224778887765
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.93 E-value=2.2e-08 Score=96.97 Aligned_cols=179 Identities=11% Similarity=0.002 Sum_probs=108.6
Q ss_pred CcEEEEec--cccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHH-hhhhcCCCc------c-----
Q psy16252 97 GAEILMTG--ATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAI-SLKFTCSTS------K----- 162 (545)
Q Consensus 97 ~~~VlITG--atGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~-~~~~~~~~~------~----- 162 (545)
+|.+|||| ++..||.++++.|.+.|. +|++..|+.... .........-+. .......+. .
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA---~V~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNV---KIIFGIWPPVYN---IFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDAS 75 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEECGGGHH---HHHHHHHTTTTTGGGEETTTEECCEEEEEECCTT
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCC---EEEEEeCchhhh---hhhHHHHHHhhhhHHHHHHHhhhhhhhcccccce
Confidence 68999999 557999999999999875 576666653211 111110000000 000000000 0
Q ss_pred ---------------c-CCCCCCCCCCHHH----HHHHhcCccEEEEcccccc-----c----hHHHHHHHHHhHHHHHH
Q psy16252 163 ---------------E-SAQAPDLGLSPDD----KRLVTSKVNLVFHCAATLR-----F----DEELKEAIRTNMCATQT 213 (545)
Q Consensus 163 ---------------~-Dl~~~~lgl~~~~----~~~l~~~vd~Vih~Aa~~~-----~----~~~~~~~~~~Nv~gt~~ 213 (545)
. |+.+.. +.+. ..+.+.++|++||+||... + .+.+...+++|+.++..
T Consensus 76 ~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~ 152 (329)
T d1uh5a_ 76 FDTANDIDEETKNNKRYNMLQNY---TIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLIS 152 (329)
T ss_dssp CSSGGGCCHHHHTSHHHHTCCCC---SHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred ehhhcccchhhhhhhhhhhhhHH---HHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHH
Confidence 0 232221 1122 2233358999999998532 1 25678889999999999
Q ss_pred HHHHHHHc-cCCceEEEEeccccccCCCcccccccCCCCCHHHHHHhhhccCCchhHHHhhhhhcCCCCchHHHHHHHHH
Q psy16252 214 MLDLAKQC-KNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAE 292 (545)
Q Consensus 214 ll~~a~~~-~~~~~~v~vSS~~v~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~aE 292 (545)
+++.+... ..-.++|.+||..+..... .+...|+.||+..|
T Consensus 153 ~~k~~~~~m~~~GsIv~iss~~~~~~~p--------------------------------------~y~~~y~asKaal~ 194 (329)
T d1uh5a_ 153 LCKYFVNIMKPQSSIISLTYHASQKVVP--------------------------------------GYGGGMSSAKAALE 194 (329)
T ss_dssp HHHHHGGGEEEEEEEEEEECGGGTSCCT--------------------------------------TCTTTHHHHHHHHH
T ss_pred HHHHHHhhcccccccccceeehhccccc--------------------------------------ccchhhhhhhcccc
Confidence 98887763 2235788898876543210 12256999999999
Q ss_pred HHHHHhc------cCCCEEEEccceeeccCCCCCCC
Q psy16252 293 QLLCEEA------QFFPVCIFRPSIVISTWKEPIPG 322 (545)
Q Consensus 293 ~~~~~~~------~~l~~~i~Rp~~i~g~~~~~~~g 322 (545)
.+.+..+ .|+++..|.||.|-.+...+++|
T Consensus 195 ~ltr~lA~Ela~~~gIRVNaI~PG~i~T~a~~~i~g 230 (329)
T d1uh5a_ 195 SDTRVLAYHLGRNYNIRINTISAGPLKSRAATAINK 230 (329)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECCCCCTTGGGCC-
T ss_pred ccchhhHHHHhcccCcEEEEEecCcccchhhhcccc
Confidence 9988765 38999999999885543333333
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=98.90 E-value=2e-08 Score=93.64 Aligned_cols=232 Identities=9% Similarity=-0.031 Sum_probs=122.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|+||||++.||++++++|++.|. +|++..|++..... |+.+..- .....
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga---~V~~~~~~~~~~~~------------------------d~~~~~~--~~~~~ 52 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGH---QIVGIDIRDAEVIA------------------------DLSTAEG--RKQAI 52 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSSSEEC------------------------CTTSHHH--HHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECChHHHHH------------------------HhcCHHH--HHHHH
Confidence 7899999999999999999999976 68888876432110 2221100 00001
Q ss_pred H----HHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHc---cCCceEEEEeccccccCCCcccccccCCC
Q psy16252 178 R----LVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQC---KNLKMFTYVSTAFSNSYRKNIEEIIYKAH 250 (545)
Q Consensus 178 ~----~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~~~v~vSS~~v~~~~~~i~E~~~~~~ 250 (545)
. +....+|+++|+|+.......+.....+|..+...+.+..... ........+++.......... .+
T Consensus 53 ~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 126 (257)
T d1fjha_ 53 ADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDK------NP 126 (257)
T ss_dssp HHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGG------CT
T ss_pred HHHHHHhCCCCcEEEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhh------hh
Confidence 1 1123689999999976655666777788888887777654431 133455555554332211000 00
Q ss_pred CCHHHHHHhhhccCCchhHHHhhhhhcCCC--CchHHHHHHHHHHHHHHhc-----cCCCEEEEccceeeccCCCCCCCC
Q psy16252 251 THYSELLKISKLDVDDPKYQETRERLSHEN--MNTYTLTKAAAEQLLCEEA-----QFFPVCIFRPSIVISTWKEPIPGW 323 (545)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~sK~~aE~~~~~~~-----~~l~~~i~Rp~~i~g~~~~~~~g~ 323 (545)
.... ... -......... ...... ...|+.||+..+.+.+.++ .|+++..+.||.|-.+....
T Consensus 127 ~~~~-----~~~-g~~~~i~s~~-~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~---- 195 (257)
T d1fjha_ 127 LALA-----LEA-GEEAKARAIV-EHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQA---- 195 (257)
T ss_dssp THHH-----HHH-TCHHHHHHHH-HTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------------
T ss_pred hhhh-----ccC-CcEEEEeeeh-hccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHh----
Confidence 0000 000 0000000000 000011 1369999999999998875 78999999999986542110
Q ss_pred ccCccchHHHHHHHhcCceeEEecCCCCcccceehHHHHHHHHhcccccccccCCCCCCCCEEEeecC
Q psy16252 324 IDNLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIYNYVNS 391 (545)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~~~~~~~~~~vy~i~~~ 391 (545)
............... ...--+...+|||++++.++..... --.|.+..+.++
T Consensus 196 ---~~~~~~~~~~~~~~~--------~PlgR~g~p~eva~~v~fL~S~~s~-----~itG~~i~vDGG 247 (257)
T d1fjha_ 196 ---GLQDPRYGESIAKFV--------PPMGRRAEPSEMASVIAFLMSPAAS-----YVHGAQIVIDGG 247 (257)
T ss_dssp ----------------CC--------CSTTSCCCTHHHHHHHHHHTSGGGT-----TCCSCEEEESTT
T ss_pred ---hcCCHHHHHHHHhcC--------CCCCCCcCHHHHHHHHHHHhCchhC-----CccCceEEeCCC
Confidence 000001111111100 1112256789999999988764432 124778887665
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.53 E-value=1.3e-07 Score=83.74 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=59.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~ 173 (545)
++||+|+||||+|.||+.+++.|++.|. +|++..|+. ++++.....+... ....... |++ +
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G~---~V~~~~r~~------~~~~~~~~~~~~~---~~~~~~~~d~~------~ 82 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEGA---EVVLCGRKL------DKAQAAADSVNKR---FKVNVTAAETA------D 82 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSH------HHHHHHHHHHHHH---HTCCCEEEECC------S
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhcc---chhhcccch------HHHHHHHHHHHhc---cchhhhhhhcc------c
Confidence 5789999999999999999999999865 788888874 3333322221111 1223333 776 6
Q ss_pred HHHHHHHhcCccEEEEcccc
Q psy16252 174 PDDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~ 193 (545)
.+++++++.++|+|||+||.
T Consensus 83 ~~~~~~~~~~iDilin~Ag~ 102 (191)
T d1luaa1 83 DASRAEAVKGAHFVFTAGAI 102 (191)
T ss_dssp HHHHHHHTTTCSEEEECCCT
T ss_pred HHHHHHHhcCcCeeeecCcc
Confidence 78899999999999999986
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.46 E-value=0.00012 Score=60.45 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=74.7
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc--CCCCCCCCCCHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE--SAQAPDLGLSPDD 176 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~--Dl~~~~lgl~~~~ 176 (545)
+|.|.||+|.+|++++..|..++. +.+++++...+. ..+.++- .. ...+.. .. ....+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~~~---~~~a~Dl--~~--------~~~~~~~~~~------~~~~~ 61 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAHT---PGVAADL--SH--------IETRATVKGY------LGPEQ 61 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSSH---HHHHHHH--TT--------SSSSCEEEEE------ESGGG
T ss_pred eEEEECCCChHHHHHHHHHHhCCc-cceEEEEecccc---chhhHHH--hh--------hhhhcCCCeE------EcCCC
Confidence 689999999999999998887743 567887765421 1111110 00 000000 01 13355
Q ss_pred HHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
..+.++++|+||.+||..+- .++..+..+.|+.-.+.+++.+.+. +.+.++.+-|
T Consensus 62 ~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvt 117 (144)
T d1mlda1 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIIS 117 (144)
T ss_dssp HHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred hHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence 67777999999999997532 3445667899999999999999987 6666666655
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.12 E-value=0.00029 Score=58.10 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=69.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|.|.||+|.+|..++..|+.++. ..++..+.+.++- .+.+.....+.+.... ..... ++... ..+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~~~~----~~~~g~a~Dl~~~~~~-~~~~~-~~~~~----~~~d~ 69 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREHSI----NKLEGLREDIYDALAG-TRSDA-NIYVE----SDENL 69 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGGGH----HHHHHHHHHHHHHHTT-SCCCC-EEEEE----ETTCG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCc-ccccccccchhhh----Hhhhcccccchhcccc-cccCC-ccccC----CcchH
Confidence 5799999999999999999888742 4578887775321 1111111101110000 00000 00000 00112
Q ss_pred HHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEE
Q psy16252 178 RLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFT 228 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v 228 (545)
+.++++|+||-+||..+- .++..+..+.|..-.+.+++...+. ..+.++
T Consensus 70 -~~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~-~~~~ii 119 (145)
T d1hyea1 70 -RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-CDTKIF 119 (145)
T ss_dssp -GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CCCEEE
T ss_pred -HHhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhcc-CCCeEE
Confidence 345789999999997543 3456678899999999999988876 444443
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00027 Score=58.28 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=67.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc--CCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE--SAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~--Dl~~~~lgl~~~ 175 (545)
|+|.|+||+|.+|++++..|..+.....++.++...+. ...+.+ -+.+ -..... -+. ...
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~--~~g~a~--Dl~h--------~~~~~~~~~~~------~~~ 62 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV--TPGVAV--DLSH--------IPTAVKIKGFS------GED 62 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT--HHHHHH--HHHT--------SCSSCEEEEEC------SSC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc--chhHHH--HHHC--------CccccCCcEEE------cCC
Confidence 68999999999999999887654223557777765321 111111 0110 000000 010 112
Q ss_pred HHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEE
Q psy16252 176 DKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFT 228 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v 228 (545)
+++ .+++.|+||.+||..+ ..++..++...|..-.+.+++...+. ..+.++
T Consensus 63 ~~~-~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~-~p~aiv 114 (145)
T d2cmda1 63 ATP-ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACI 114 (145)
T ss_dssp CHH-HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEE
T ss_pred Ccc-ccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhh-CCCcEE
Confidence 344 4679999999999753 33344567799999999999988876 444433
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.90 E-value=0.0047 Score=50.64 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=68.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
+.++|.|.|+ |.+|..++..|+..+. +.+|+++.+.+. +.+....++.+........... . .
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~-~~elvL~D~~~~------~~~g~a~Dl~~a~~~~~~~~~~--~--------~ 65 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVKD------RTKGDALDLEDAQAFTAPKKIY--S--------G 65 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHH------HHHHHHHHHHGGGGGSCCCEEE--E--------C
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEeecccc------hhHHHHHHHhccccccCCceEe--e--------c
Confidence 3579999996 9999999999999853 458888877532 1111110111100000110000 0 1
Q ss_pred HHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 176 DKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
+++ .+.++|+||.+|+...- ..+..+....|+.-.+.+++...+. ..+.++.+-|
T Consensus 66 d~~-~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvt 121 (146)
T d1ez4a1 66 EYS-DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAA 121 (146)
T ss_dssp CGG-GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred cHH-HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeC
Confidence 122 24789999999987542 3445667789999999999988886 5666665554
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.86 E-value=0.0012 Score=56.25 Aligned_cols=115 Identities=16% Similarity=0.079 Sum_probs=67.8
Q ss_pred hhhhhcCcEEEEeccccccchHHHHHHHhh---CCCc-CEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCC
Q psy16252 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRS---FPRV-KTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQ 166 (545)
Q Consensus 91 ~~~~~~~~~VlITGatGflG~~l~~~Ll~~---g~~v-~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~ 166 (545)
..+..+..+|.||||+|.+|.+++-.|.+. |.+. ..++.+..++. ...++...- .+. |..
T Consensus 18 ~~~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~----~~~l~g~~m----dl~--------d~a 81 (175)
T d7mdha1 18 TKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERS----FQALEGVAM----ELE--------DSL 81 (175)
T ss_dssp ---CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG----HHHHHHHHH----HHH--------TTT
T ss_pred hhccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccc----cchhcchhh----hhc--------ccc
Confidence 333344568999999999999999988764 1111 13444433321 112221100 000 111
Q ss_pred CCCCC--CCHHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 167 APDLG--LSPDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 167 ~~~lg--l~~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
-+.+. ....+..+.++++|+||-.||..+ ...+..+.+..|+.-.+.+.+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~ 139 (175)
T d7mdha1 82 YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 139 (175)
T ss_dssp CTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 11000 001234566789999999999764 44566788899999999999999884
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.71 E-value=0.0017 Score=54.06 Aligned_cols=119 Identities=14% Similarity=0.070 Sum_probs=71.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
+.++|.|.|| |.+|+.++..|...+ +.+++++...+.. .+....-+........ ... .+. ...
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~--~~el~L~D~~~~~---~~g~a~Dl~~~~~~~~-~~~----~~~------~~~ 68 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRE--LADVVLYDVVKGM---PEGKALDLSHVTSVVD-TNV----SVR------AEY 68 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHT--CCEEEEECSSSSH---HHHHHHHHHHHHHHTT-CCC----CEE------EEC
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCC--CceEEEEEecccc---chhHHHHHhhhccccC-Cee----EEe------ccC
Confidence 3578999997 999999998887774 4578777655431 1111111111000000 000 000 112
Q ss_pred HHHHHhcCccEEEEccccccchH------HHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 176 DKRLVTSKVNLVFHCAATLRFDE------ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~~~~------~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
.+++.++++|+|+-+|+..+... +.......|+.-.+.+++.+.+. +.+.++.+-|
T Consensus 69 ~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivs 130 (154)
T d1pzga1 69 SYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVT 130 (154)
T ss_dssp SHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred chhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeC
Confidence 35667789999999998754221 33456788999999999988886 5566665544
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.47 E-value=0.0068 Score=50.18 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=64.5
Q ss_pred CcEEEEeccccccchHHHHHHHhhCC--CcC-EEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFP--RVK-TIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLS 173 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~--~v~-~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~ 173 (545)
.++|.|+||+|++|++++..|..... +.. ....+.-... ..+.+...... +..........+. .
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~------~ 70 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ---AMKALEGVVME----LEDCAFPLLAGLE------A 70 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG---GHHHHHHHHHH----HHTTTCTTEEEEE------E
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcccc---chhhHcCchhh----hhccccccccccc------c
Confidence 47999999999999999999987531 011 1122222211 11222211110 0000000000111 0
Q ss_pred HHHHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
.....+.++++|+||-+||..+ ...+..+....|+.-.+.+.+...+.
T Consensus 71 ~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~ 119 (154)
T d1y7ta1 71 TDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV 119 (154)
T ss_dssp ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 1224566789999999999764 34456677899999999999988874
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.39 E-value=0.0047 Score=50.48 Aligned_cols=36 Identities=11% Similarity=0.251 Sum_probs=27.8
Q ss_pred cEEEEeccccccchHHHHHHHhh-CCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~-g~~v~~V~~l~R~ 133 (545)
|+|.|.||||++|+.|++.|+++ .+.+..+..+..+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~ 37 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS 37 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc
Confidence 57999999999999999999864 2345567666543
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.0033 Score=51.52 Aligned_cols=38 Identities=11% Similarity=0.221 Sum_probs=30.4
Q ss_pred cEEEEeccccccchHHHHHHHhhC-CCcCEEEEEecCCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSF-PRVKTIYVIVRAKK 135 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g-~~v~~V~~l~R~~~ 135 (545)
|+|.|.||||++|+.+++.|+++. +.+..++++.++..
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s 40 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQL 40 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSST
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccc
Confidence 579999999999999999988752 35667888776644
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.15 E-value=0.0082 Score=48.85 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=66.2
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
++|.|.|| |.+|..++..|+..+. +.+++++.+.+....+. .++ +.. ...+...... ...++
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~L~D~~~~~~~g~-a~D---------l~~-~~~~~~~~~~-----~~~~~ 63 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEKAIGE-AMD---------INH-GLPFMGQMSL-----YAGDY 63 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---CCHH-HHH---------HTT-SCCCTTCEEE-----C--CG
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeccCCcccee-eee---------ecc-CcccCCCeeE-----eeCcH
Confidence 46788897 9999999999988753 56888888776533221 110 000 0000000000 00112
Q ss_pred HHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 178 RLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
+.++++|+|+-+|+..+ ..++.......|+.-.+.+++...+. ..+.++.+
T Consensus 64 -~~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~iv 115 (142)
T d1y6ja1 64 -SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILV 115 (142)
T ss_dssp -GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEE
T ss_pred -HHhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEE
Confidence 23578999999999754 23455677899999999999988886 44554444
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.15 E-value=0.0017 Score=55.06 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=26.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
++|.|.||||++|..|++.|.++ +++.-+.+..|+
T Consensus 2 ikVaIvGATGyvG~eLirlL~~H-P~~ei~~l~s~~ 36 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRT 36 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECST
T ss_pred eEEEEECCCcHHHHHHHHHHHhC-CCceEEEeeccc
Confidence 58999999999999999988876 666444443343
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.07 E-value=0.0051 Score=50.07 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=68.3
Q ss_pred EEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCcccCCCCCCCCCCHHHH
Q psy16252 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
+|.|.||+|.+|++++..|+.++. +.+++++..+... +..+....++.+.... .... +.. .++
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di~~~~----~~~~g~a~Dl~~~~~~~~~~~----i~~-------~~~ 65 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIPDKE----DDTVGQAADTNHGIAYDSNTR----VRQ-------GGY 65 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCGGGH----HHHHHHHHHHHHHHTTTCCCE----EEE-------CCG
T ss_pred eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEecCCcc----cccceeecchhhcccccCCce----Eee-------CCH
Confidence 689999999999999999998853 5577777653221 1111100001111100 0000 000 112
Q ss_pred HHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEE
Q psy16252 178 RLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTY 229 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~ 229 (545)
+. +.++|+|+-+||..+- .++..+..+.|..-.+.+++...+. ..+.++-
T Consensus 66 ~~-~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~i 116 (142)
T d1o6za1 66 ED-TAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISL 116 (142)
T ss_dssp GG-GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEE
T ss_pred HH-hhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEE
Confidence 22 4689999999996543 3456678899999999999988886 4454443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=95.94 E-value=0.0039 Score=50.93 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=68.6
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH--HHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT--VAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~--~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
|+|.|+|| |.+|..++..|+..+. +.++.++.+.+..... ....+.. .+. .... .+.. ..
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l-~~el~L~Di~~~~~~~---~~~d~~~~~~~~---~~~~----~i~~------~~ 62 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEGIPQG---KALDMYESGPVG---LFDT----KVTG------SN 62 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSSHHHH---HHHHHHTTHHHH---TCCC----EEEE------ES
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-CceEEEeccccccchh---hhhhhhcccchh---cccc----eEEe------cC
Confidence 57899997 9999999999988753 5688888776532111 1111111 000 0011 1110 01
Q ss_pred HHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 176 DKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
+ .+.++++|+|+-+||..+ ...........|..-.+.+++...+. ..+.++.+
T Consensus 63 ~-~~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aiviv 116 (142)
T d1guza1 63 D-YADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIV 116 (142)
T ss_dssp C-GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEE
T ss_pred C-HHHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEE
Confidence 1 223578999999999753 33445667788999999999888775 44555544
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.92 E-value=0.0025 Score=54.70 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=26.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEE
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI 130 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l 130 (545)
..+|.|.||||++|..|++.|.++ |.+. +..+
T Consensus 5 kikVaIlGATGyvG~elirLL~~H-P~~e-i~~l 36 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANH-PQFR-IKVM 36 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTC-SSEE-EEEE
T ss_pred ccEEEEECcccHHHHHHHHHHHhC-CCce-EEEE
Confidence 568999999999999999999886 6664 4444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.90 E-value=0.029 Score=45.78 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=68.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
+++|.|.|| |.+|++++..|+..+. +.+++++.+.+. +.+....++.+........ . .+.. .+
T Consensus 6 ~~KI~IiGa-G~vG~~~a~~l~~~~l-~~el~L~Di~~~------~~~g~a~Dl~~~~~~~~~~-~-~~~~-------~d 68 (148)
T d1ldna1 6 GARVVVIGA-GFVGASYVFALMNQGI-ADEIVLIDANES------KAIGDAMDFNHGKVFAPKP-V-DIWH-------GD 68 (148)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHH------HHHHHHHHHHHHTTSSSSC-C-EEEE-------CC
T ss_pred CCeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEeeccc------cccchhccHhhCccccCCC-e-EEEE-------CC
Confidence 578999997 9999999999998864 567888876532 1111111111100000000 0 0110 11
Q ss_pred HHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 177 KRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
+ +.++++|+||.+|+..+ ......+....|+.-.+.+++...+. ..+.++.+
T Consensus 69 ~-~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~iv 121 (148)
T d1ldna1 69 Y-DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLV 121 (148)
T ss_dssp G-GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEE
T ss_pred H-HHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEE
Confidence 2 33578999999999754 23334566788999899999888776 44444433
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.66 E-value=0.07 Score=42.91 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=69.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCcccCCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~Dl~~~~lgl~~~~ 176 (545)
|+|.|.|| |.+|..++..|+.++. +.++.++.+.+. +.+....++.+.... ... .+. ..+
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l-~~el~L~Di~~~------~~~g~~~Dl~~~~~~~~~~----~~~-------~~~ 61 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDKK------RAEGDALDLIHGTPFTRRA----NIY-------AGD 61 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHH------HHHHHHHHHHHHGGGSCCC----EEE-------ECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEecccc------cccchhccccccccccccc----ccc-------CCc
Confidence 57889997 9999999998888853 567888776532 222111111111100 000 011 011
Q ss_pred HHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 177 KRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
++ .++++|+|+-+|+..+- .....+....|..-.+.+++...+. ..+.++.+-|
T Consensus 62 ~~-~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvt 116 (140)
T d1a5za1 62 YA-DLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVT 116 (140)
T ss_dssp GG-GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred HH-HhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeC
Confidence 22 35789999999997543 3445667788999899999888886 5556665543
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.022 Score=48.35 Aligned_cols=83 Identities=8% Similarity=0.035 Sum_probs=54.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc--CCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE--SAQAPDLGL 172 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~--Dl~~~~lgl 172 (545)
.++++|+|.|+ |..|++++..|.+.| ++.|++..|..... +++..... .+......... ++.
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g--~~~i~i~nR~~~~~---~~~~~l~~----~~~~~~~~~~~~~~~~------ 79 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEG--LKEIKLFNRRDEFF---DKALAFAQ----RVNENTDCVVTVTDLA------ 79 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEECSSTTH---HHHHHHHH----HHHHHSSCEEEEEETT------
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcC--CceEeeeccchHHH---HHHHHHHH----HHHhhcCcceEeeecc------
Confidence 46799999997 778999999999984 57899999876432 33332211 11111111111 444
Q ss_pred CHHHHHHHhcCccEEEEcccc
Q psy16252 173 SPDDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 173 ~~~~~~~l~~~vd~Vih~Aa~ 193 (545)
+.+.+.....++|+|||+...
T Consensus 80 ~~~~~~~~~~~~diiIN~Tp~ 100 (182)
T d1vi2a1 80 DQQAFAEALASADILTNGTKV 100 (182)
T ss_dssp CHHHHHHHHHTCSEEEECSST
T ss_pred cccchhhhhcccceeccccCC
Confidence 456677777899999998654
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=95.56 E-value=0.068 Score=43.32 Aligned_cols=116 Identities=9% Similarity=0.073 Sum_probs=67.0
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
|+|.|.|| |.+|..++..|+.+|. +.+++.+.+.+. +.+....++.+....... +... ...++
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~-~~elvL~Di~~~------~~~g~~~Dl~~a~~~~~~----~~~~-----~~~d~ 64 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGV-ADDYVFIDANEA------KVKADQIDFQDAMANLEA----HGNI-----VINDW 64 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHH------HHHHHHHHHHHHGGGSSS----CCEE-----EESCG
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEecccc------hhhhHHHhhhccccccCC----ccce-----eccCH
Confidence 78889995 9999999999998853 457777765432 222111111111110000 1100 00112
Q ss_pred HHHhcCccEEEEccccccch-----HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 178 RLVTSKVNLVFHCAATLRFD-----EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~~~-----~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
+ .++++|+||-+||..+.. .+..+..+.|+.-.+.+++...+. ..+.++.+-|
T Consensus 65 ~-~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvt 122 (146)
T d1hyha1 65 A-ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVIS 122 (146)
T ss_dssp G-GGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred H-HhccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEec
Confidence 2 347899999999975421 122345678999999999888886 5555555444
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.47 E-value=0.079 Score=42.73 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=68.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDK 177 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~~ 177 (545)
.+|.|.|+ |.+|++++..|+.++. +.+++++.+.+. +.+....++-+........ .+. ...++
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l-~~ElvL~D~~~~------~~~g~a~Dl~~a~~~~~~~---~i~------~~~~~ 64 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLEDIAKE------RVEAEVLDMQHGSSFYPTV---SID------GSDDP 64 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSHH------HHHHHHHHHHHTGGGSTTC---EEE------EESCG
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEEEeccc------cchhHHHHHHhccccCCCc---eee------cCCCH
Confidence 46888997 9999999999998854 567887766532 1111100000000000000 010 01123
Q ss_pred HHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEE
Q psy16252 178 RLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYV 230 (545)
Q Consensus 178 ~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~v 230 (545)
+ .++++|+||-+||..+ ...+..+....|+.-.+.+++...+. ..+.++.+
T Consensus 65 ~-~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~iv 116 (143)
T d1llda1 65 E-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYML 116 (143)
T ss_dssp G-GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE
T ss_pred H-HhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEE
Confidence 3 3578999999999864 33455677899999999999888876 45555444
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.45 E-value=0.03 Score=47.00 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=30.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.|+|+|.|| |++|+++++.|.+.|+ .|++..|+.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~---~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGI---KVTVACRTL 35 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTC---EEEEEESCH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECCh
Confidence 589999987 9999999999999876 688888874
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.44 E-value=0.0059 Score=50.61 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=62.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhC---C-CcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSF---P-RVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLG 171 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g---~-~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lg 171 (545)
.++|.|+||+|.+|.+++..|+..+ . ....++.+...+. ....+..--.+.+- ....... ...
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~----~~~~~~l~~~~~~~---~~~~~~~~~~~----- 70 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM----MGVLDGVLMELQDC---ALPLLKDVIAT----- 70 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG----HHHHHHHHHHHHHT---CCTTEEEEEEE-----
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc----hhhhhhhhhhhccc---ccccccccccC-----
Confidence 4799999999999999999887642 1 1112333322211 11111110000000 0000000 111
Q ss_pred CCHHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHc
Q psy16252 172 LSPDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQC 221 (545)
Q Consensus 172 l~~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (545)
.+..+.++++|+||-+||..+- .++..+.++.|..-.+.+.+...+.
T Consensus 71 ---~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~ 118 (154)
T d5mdha1 71 ---DKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118 (154)
T ss_dssp ---SCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhh
Confidence 2245677899999999997542 3344566788999889988877663
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.35 E-value=0.098 Score=42.11 Aligned_cols=115 Identities=13% Similarity=-0.003 Sum_probs=69.4
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhh--hhcCCCcccCCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISL--KFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~--~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
|+|.|.|| |.+|.+++..|+.++ -+.+++++.+.+. +.+....++-+.. ......+.. ..
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~------~~~g~alDl~~~~~~~~~~~~i~~----------~~ 62 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAED------LAVGEAMDLAHAAAGIDKYPKIVG----------GA 62 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHH------HHHHHHHHHHHHHHTTTCCCEEEE----------ES
T ss_pred CEEEEECc-CHHHHHHHHHHHhcC-cCceEEEEecccc------hhhHHHHHHhhhccccCCCCcccc----------CC
Confidence 57899997 999999999988875 3567888766532 1111000010000 000000000 01
Q ss_pred HHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 176 DKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
++ +.++++|+||-.|+..+ ...+..+....|..-.+.+++...+. +.+.++.+-|
T Consensus 63 d~-~~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvt 118 (142)
T d1ojua1 63 DY-SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT 118 (142)
T ss_dssp CG-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred CH-HHhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEec
Confidence 22 24578999999998653 33445667788999999999988886 4555555544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.20 E-value=0.013 Score=46.93 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=46.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+|+|.|+ |.+|+.+++.|.+.|+ .|.++.+++ ++++..... -...++. |.+ +++.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~---~v~vid~d~------~~~~~~~~~-------~~~~vi~Gd~~------~~~~ 57 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGH---DIVLIDIDK------DICKKASAE-------IDALVINGDCT------KIKT 57 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH-------CSSEEEESCTT------SHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---CcceecCCh------hhhhhhhhh-------hhhhhccCccc------chhh
Confidence 68999998 9999999999999876 577776643 233221110 0222333 666 6667
Q ss_pred HHHH-hcCccEEEEc
Q psy16252 177 KRLV-TSKVNLVFHC 190 (545)
Q Consensus 177 ~~~l-~~~vd~Vih~ 190 (545)
+.++ +++++.++-+
T Consensus 58 l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 58 LEDAGIEDADMYIAV 72 (132)
T ss_dssp HHHTTTTTCSEEEEC
T ss_pred hhhcChhhhhhhccc
Confidence 7766 4678888765
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=95.20 E-value=0.0087 Score=48.73 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=64.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHH--HHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT--VAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~--~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
++|.|.|+ |.+|..++..|... ++..+.++...+... +....-+.. .+. .....+.. ..
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~--~l~dl~l~D~~~~~~---~~~~~Dl~~~~~~~---~~~~~i~~----------~~ 62 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAK--ELGDIVLLDIVEGVP---QGKALDLYEASPIE---GFDVRVTG----------TN 62 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH--TCSEEEEECSSSSHH---HHHHHHHHTTHHHH---TCCCCEEE----------ES
T ss_pred CeEEEECC-CHHHHHHHHHHHhC--CcceEEEEeeccccc---hhHHHHhhcccccc---CCCCEEEe----------cC
Confidence 67889996 99999999988887 355788776654311 111111111 110 00111110 01
Q ss_pred HHHHHhcCccEEEEcccccc-chHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 176 DKRLVTSKVNLVFHCAATLR-FDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
+++. +++.|+||-+||... ...+..+....|+.-.+.+++...+. ..+.++.+-|
T Consensus 63 d~~~-~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvt 118 (142)
T d1uxja1 63 NYAD-TANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVN 118 (142)
T ss_dssp CGGG-GTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECS
T ss_pred cHHH-hcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeC
Confidence 2232 478999999999754 34455667788999999999888875 5555555533
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.05 E-value=0.0074 Score=51.83 Aligned_cols=34 Identities=32% Similarity=0.285 Sum_probs=29.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
|+|.|+||+|.+|++|++.|++.|+ +|.+..|++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~---~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH---EIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence 6789999999999999999999987 677888864
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=0.0081 Score=52.98 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=27.7
Q ss_pred hcCcEEEEecc----------------ccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 95 YEGAEILMTGA----------------TGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 95 ~~~~~VlITGa----------------tGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
++|++||||+| ||-.|.+|++.+.+.|++ |.++.-+
T Consensus 4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~---V~li~g~ 55 (223)
T d1u7za_ 4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGAN---VTLVSGP 55 (223)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCE---EEEEECS
T ss_pred cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCc---hhhhhcc
Confidence 56788888865 688999999999999874 5554433
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=94.79 E-value=0.12 Score=42.41 Aligned_cols=115 Identities=11% Similarity=0.104 Sum_probs=68.9
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCcccCCCCCCCCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKESAQAPDLGLS 173 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~Dl~~~~lgl~ 173 (545)
...++|.|.|+ |.+|..++..|...|. +.+++.+.+.+. +.+....++.+.... .......
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l-~~ElvLiD~~~~------~a~g~alDl~h~~~~~~~~~~~~---------- 79 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGKSL-ADELALVDVLED------KLKGEMMDLQHGSLFLQTPKIVA---------- 79 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSCHH------HHHHHHHHHHHTGGGCCCSEEEE----------
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCC-CcEEEEEEeccc------hhHHHHHHHhccccccCCCeEEe----------
Confidence 44679999996 9999999999999864 557887766422 111110001110000 0000000
Q ss_pred HHHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEEE
Q psy16252 174 PDDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFTY 229 (545)
Q Consensus 174 ~~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~ 229 (545)
..++ +.++++|+|+.+||..+- .++..+....|+.-.+.++....+. +.+.++.
T Consensus 80 ~~d~-~~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiii 134 (160)
T d1i0za1 80 DKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIII 134 (160)
T ss_dssp CSSG-GGGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEE
T ss_pred ccch-hhcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEE
Confidence 0112 235789999999997643 2344566788999999999888886 4454443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=94.61 E-value=0.027 Score=46.59 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=51.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
+++++|||.|+ |-+|+.+++.|...| ...|.+..|... +....... + .... .+-
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g--~~~i~v~nRt~~------ka~~l~~~-~------------~~~~----~~~ 75 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRG--VRAVLVANRTYE------RAVELARD-L------------GGEA----VRF 75 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHC--CSEEEEECSSHH------HHHHHHHH-H------------TCEE----CCG
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcC--CcEEEEEcCcHH------HHHHHHHh-h------------hccc----ccc
Confidence 45799999998 999999999999985 457888888632 22221111 0 1110 133
Q ss_pred HHHHHHhcCccEEEEcccccc
Q psy16252 175 DDKRLVTSKVNLVFHCAATLR 195 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~ 195 (545)
+++.+.+.++|+||.+.+...
T Consensus 76 ~~~~~~l~~~Divi~atss~~ 96 (159)
T d1gpja2 76 DELVDHLARSDVVVSATAAPH 96 (159)
T ss_dssp GGHHHHHHTCSEEEECCSSSS
T ss_pred hhHHHHhccCCEEEEecCCCC
Confidence 567778889999999987543
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.0091 Score=42.70 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=30.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
++.+|||+||+|.+|...+..+...|. +|++..++++
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~---~Vi~~t~s~~ 67 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGY---QVVAVSGRES 67 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCC---eEEEEECCHH
Confidence 468999999999999999987776654 6888888753
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.37 E-value=0.0095 Score=50.44 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=30.6
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKN 136 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~ 136 (545)
.+.+|||+||+|.+|...+.-....|. +|++.++++..
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga---~Viat~~s~~k 68 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGY---TVEASTGKAAE 68 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCTTC
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCC---ceEEecCchHH
Confidence 478999999999999999877766654 67888887654
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.36 E-value=0.017 Score=47.10 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=28.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.++|.|.||||++|..|++.|.++.|...++..+..+
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~ 38 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA 38 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence 4789999999999999999887655445567666443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.30 E-value=0.033 Score=47.09 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=29.5
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+|.+|||+||+|.+|...+..+...|. +|++.++++
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~---~vi~~~~~~ 60 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGA---RIYTTAGSD 60 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC---EEEEEESSH
T ss_pred CCCEEEEECCCCCcccccchhhccccc---cceeeeccc
Confidence 478999999999999999987777654 677777753
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.22 E-value=0.044 Score=46.35 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=30.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+|.+|||+||+|.+|...+.-....|. +|++.+|++
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga---~vi~~~~~~ 64 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGC---KVVGAAGSD 64 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCC---EEEEeCCCH
Confidence 489999999999999998877766653 799988863
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.037 Score=46.42 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=28.8
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.|.+|||+||+|.+|...+..+...|. +|++++++
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~---~vi~~~~~ 62 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGL---KILGTAGT 62 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCEEEEEeccccccccccccccccCc---cccccccc
Confidence 478999999999999988887766653 68888875
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.021 Score=50.61 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=37.3
Q ss_pred CCChhhhc--CCCeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEeccc
Q psy16252 6 PPSLDDFY--EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 52 (545)
Q Consensus 6 ~~~~~~~~--~~~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~~ 52 (545)
++.+.+-| +++++++|||||++|..|+..|+.. +.+.+|+++.|..
T Consensus 3 ~~~~~~~~~m~~k~IlItGaTG~iG~~l~~~Ll~~-g~~~~v~~~~R~~ 50 (232)
T d2bkaa1 3 LSKLREDFRMQNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRK 50 (232)
T ss_dssp HHHHHHHHHHTCCEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESSC
T ss_pred hHHHHHHhCCCCCEEEEECCCcHHHHHHHHHHHhC-CCCCEEEEEecCh
Confidence 34455533 4789999999999999999999986 5778999999854
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=93.84 E-value=0.016 Score=54.82 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=33.4
Q ss_pred hhhcCCCeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecc
Q psy16252 10 DDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 51 (545)
Q Consensus 10 ~~~~~~~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~ 51 (545)
..||+++.+|+|||+||+|..|+..|++.. -.|+.+.|.
T Consensus 3 ~~~~~~KkILVTG~tGfIGs~lv~~Ll~~g---~~V~~~~r~ 41 (356)
T d1rkxa_ 3 NSFWQGKRVFVTGHTGFKGGWLSLWLQTMG---ATVKGYSLT 41 (356)
T ss_dssp HHHHTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESS
T ss_pred hhhhCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECC
Confidence 369999999999999999999999999974 357777664
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=93.81 E-value=0.025 Score=47.93 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=27.1
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
++|.|.||||++|..|++.|..+ |++.-+.+..++
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~H-P~~ei~~l~~~s 36 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRH-PHMTITALTVSA 36 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHC-TTEEEEEEEEET
T ss_pred cEEEEECcccHHHHHHHHHHHhC-CCCceEeeEeec
Confidence 68999999999999999988876 666433444444
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.71 E-value=0.019 Score=48.25 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=29.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
.+.+|+|+||+|-+|...+..+...|. +|++.++++.
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~---~vi~~~~~~~ 63 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGL---RVLAAASRPE 63 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred CCCEEEEEeccccchhhhhhhhccccc---cccccccccc
Confidence 479999999999999999887766653 6888887643
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.68 E-value=0.029 Score=45.91 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=67.9
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHHH
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD 176 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~~ 176 (545)
+.+|-|.|+ |.+|++++..|... .+.++.++.+.+... +.....+... ..+......+.. ..
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~--~l~el~L~Di~~~~~---~g~a~Dl~~~-~~~~~~~~~v~~-----------~~ 64 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQK--NLGDVVLFDIVKNMP---HGKALDTSHT-NVMAYSNCKVSG-----------SN 64 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECSSSSHH---HHHHHHHHTH-HHHHTCCCCEEE-----------EC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhC--CCCeEEEEeccCCcc---eeeecchhhh-ccccCCCcEEEe-----------cc
Confidence 368999996 99999999767665 367888877754311 1111111110 000000111110 01
Q ss_pred HHHHhcCccEEEEccccccch------HHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEec
Q psy16252 177 KRLVTSKVNLVFHCAATLRFD------EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232 (545)
Q Consensus 177 ~~~l~~~vd~Vih~Aa~~~~~------~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS 232 (545)
..+.+.++|+|+-+|+..+.. .........|+.-.+.+++...+. ..+.++.+-|
T Consensus 65 ~~~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvt 125 (150)
T d1t2da1 65 TYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 125 (150)
T ss_dssp CGGGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred cccccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence 123347899999999975422 113456788999999999888886 5566555543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.072 Score=44.70 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=48.7
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
.+.+|+|+||+|.+|..++.-....|. +|++.++++. +++...+. ..+.+-|..++++ .+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga---~Vi~~~~s~~------k~~~~~~l--------Ga~~vi~~~~~d~---~~ 87 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGA---KLIGTVGTAQ------KAQSALKA--------GAWQVINYREEDL---VE 87 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTC---EEEEEESSHH------HHHHHHHH--------TCSEEEETTTSCH---HH
T ss_pred CCCEEEEEccccccchHHHHHHHHhCC---eEeecccchH------HHHHHHhc--------CCeEEEECCCCCH---HH
Confidence 378999999999999999987777654 7888888742 22211110 1110004444432 24
Q ss_pred HHHHHhc--CccEEEEcccc
Q psy16252 176 DKRLVTS--KVNLVFHCAAT 193 (545)
Q Consensus 176 ~~~~l~~--~vd~Vih~Aa~ 193 (545)
.+.++.. ++|+|+.+.+.
T Consensus 88 ~v~~~t~g~g~d~v~d~~g~ 107 (179)
T d1qora2 88 RLKEITGGKKVRVVYDSVGR 107 (179)
T ss_dssp HHHHHTTTCCEEEEEECSCG
T ss_pred HHHHHhCCCCeEEEEeCccH
Confidence 4555543 68999999875
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.57 E-value=0.11 Score=42.71 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=65.0
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhh-cCCCcccCCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKF-TCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~Dl~~~~lgl~~ 174 (545)
+..+|.|.|+ |.+|..++..|+..+. +.+++++.+.+. +......++.+.... .....+ ..
T Consensus 18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l-~~elvL~D~~~~------~a~g~alDl~~~~~~~~~~~~~----------~~ 79 (159)
T d2ldxa1 18 SRCKITVVGV-GDVGMACAISILLKGL-ADELALVDADTD------KLRGEALDLQHGSLFLSTPKIV----------FG 79 (159)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTS-CSEEEEECSCHH------HHHHHHHHHHHTTTTCSCCEEE----------EE
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCch------hhhccHHHHhCcchhcCCCeEE----------ec
Confidence 3467999996 9999999999998854 557888765431 111110001110000 000000 00
Q ss_pred HHHHHHhcCccEEEEccccccc-hHHHHHHHHHhHHHHHHHHHHHHHccCCceEE
Q psy16252 175 DDKRLVTSKVNLVFHCAATLRF-DEELKEAIRTNMCATQTMLDLAKQCKNLKMFT 228 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v 228 (545)
.+++ .+.++|+||-+||..+. ..+..+.++.|+.-.+.++....+. +.+.++
T Consensus 80 ~d~~-~~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~iv 132 (159)
T d2ldxa1 80 KDYN-VSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKI 132 (159)
T ss_dssp SSGG-GGTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEE
T ss_pred cchh-hhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEE
Confidence 1222 34789999999987543 2333455688888888888777765 444444
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=92.53 E-value=0.013 Score=41.91 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=25.5
Q ss_pred hcCCCeEEEEcchhhhHHHHHHHHHhhCC
Q psy16252 12 FYEGAEILMTGATGFLGKLLIEKLLRSFP 40 (545)
Q Consensus 12 ~~~~~~~f~~Ggts~l~~~Ll~~l~~~~~ 40 (545)
.-.+++||++||+|+.+.+|+.+|.+++.
T Consensus 25 i~~~~~f~~lG~dSl~a~~l~~~i~~~~~ 53 (76)
T d2gdwa1 25 IGILDNFFQIGGHSLKAMAVAAQVHREYQ 53 (76)
T ss_dssp CCTTTTSSTTTCTTHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHcCCChHHHHHHHHHHHHHHC
Confidence 44567999999999999999999999874
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.28 E-value=0.18 Score=39.72 Aligned_cols=93 Identities=14% Similarity=0.199 Sum_probs=57.6
Q ss_pred hhcCcEEEEeccc---cccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCC
Q psy16252 94 FYEGAEILMTGAT---GFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDL 170 (545)
Q Consensus 94 ~~~~~~VlITGat---GflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~l 170 (545)
+++.++|.|.||| |..|..+++.|.+.| -.+|+.+....... .+. ..+.++
T Consensus 5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~--~g~v~pVnP~~~~i---------~G~----------~~y~sl----- 58 (129)
T d2csua1 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYK--KGKVYPVNIKEEEV---------QGV----------KAYKSV----- 58 (129)
T ss_dssp TTSCSEEEEETCCSCTTSHHHHHHHHHTTCC--SSEEEEECSSCSEE---------TTE----------ECBSST-----
T ss_pred hCCCCeEEEEccCCCCCCcHHHHHHHHHHcC--CCcEEEeccCcccc---------CCe----------Eeecch-----
Confidence 4678999999999 888989999987643 34788764432210 000 000022
Q ss_pred CCCHHHHHHHhcCccEEEEccccccchHHHHHHHHHhHHHHHHHHHHHHHccCCceEEEEecccc
Q psy16252 171 GLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFS 235 (545)
Q Consensus 171 gl~~~~~~~l~~~vd~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~~~v~vSS~~v 235 (545)
.++-..+|.++-+... ..+..+++.|.+. +++.++.+|+.+.
T Consensus 59 -------~dlp~~vDlvvi~vp~---------------~~~~~~~~~~~~~-g~~~~vi~s~Gf~ 100 (129)
T d2csua1 59 -------KDIPDEIDLAIIVVPK---------------RFVKDTLIQCGEK-GVKGVVIITAGFG 100 (129)
T ss_dssp -------TSCSSCCSEEEECSCH---------------HHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred -------hhcCCCCceEEEecCh---------------HHhHHHHHHHHHc-CCCEEEEeccccc
Confidence 2233568888865432 1123566777776 7888888887654
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.02 E-value=0.11 Score=44.05 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=26.1
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
+.+|||+||+|-+|...++-....|. ..|+...++
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga--~~vi~~~~~ 65 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGC--SRVVGICGT 65 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTC--SEEEEEESS
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCC--cceecccch
Confidence 47899999999999999877666653 356554443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=91.31 E-value=0.18 Score=40.89 Aligned_cols=34 Identities=29% Similarity=0.293 Sum_probs=29.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
-++|.|.||.|.+|+.+++.|.+.|++ |.+..|.
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~---V~~~d~~ 42 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYP---ISILDRE 42 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCC---EEEECTT
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCC---cEecccc
Confidence 479999999999999999999999884 5666554
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.28 E-value=0.065 Score=43.91 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=25.5
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
=+|.|.||||++|..|++.|.++.+.+..+..+.
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~ 35 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA 35 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEec
Confidence 4799999999999999987766532344565554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=91.16 E-value=0.086 Score=41.84 Aligned_cols=71 Identities=10% Similarity=0.168 Sum_probs=43.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCccc-CCCCCCCCCCHHH
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKE-SAQAPDLGLSPDD 176 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-Dl~~~~lgl~~~~ 176 (545)
|+++|.|+ |-+|+.+++.|.+.|++ |+++..++ ++++. +.......+. |.++ ++.
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~---vvvid~d~------~~~~~--------~~~~~~~~~~gd~~~------~~~ 56 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHE---VLAVDINE------EKVNA--------YASYATHAVIANATE------ENE 56 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCC---CEEEESCH------HHHHH--------TTTTCSEEEECCTTC------TTH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCe---EEEecCcH------HHHHH--------HHHhCCcceeeeccc------chh
Confidence 46788886 99999999999999874 45554432 33332 1112222222 6663 445
Q ss_pred HHHH-hcCccEEEEccc
Q psy16252 177 KRLV-TSKVNLVFHCAA 192 (545)
Q Consensus 177 ~~~l-~~~vd~Vih~Aa 192 (545)
+.++ ++++|.||-+..
T Consensus 57 l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 57 LLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp HHHHTGGGCSEEEECCC
T ss_pred hhccCCccccEEEEEcC
Confidence 6665 578888876544
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=90.59 E-value=0.097 Score=43.10 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
|+|+|.|+ |.+|..++..|.+.|+ .|.++.|.+.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~---~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGH---EVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC---ceEEEEcCHH
Confidence 68999998 9999999999999987 6888888765
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=90.08 E-value=0.083 Score=43.91 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=30.0
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKN 136 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~ 136 (545)
+.+|||+||+|.+|...++.....|. +|++.+|++..
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga---~Viat~~s~~k 60 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGY---DVVASTGNREA 60 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTC---CEEEEESSSST
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC---ceEEEecCHHH
Confidence 56799999999999999876666654 68889887653
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=89.97 E-value=0.15 Score=41.89 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=28.6
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
..+|.|.|++|-+|+.+++.+.+. .++.-+.++.|...
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~-~~~~lv~~~~~~~~ 41 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGS 41 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecccc
Confidence 478999999999999999999886 34433445556543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=89.20 E-value=0.16 Score=37.36 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=29.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
+++|+|+|.|. |--|..+++.|.+.|. +|++......
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g~---~v~~~D~~~~ 39 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARGV---TPRVMDTRMT 39 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTC---CCEEEESSSS
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCCC---EEEEeeCCcC
Confidence 57899999998 6689999999999876 4566655443
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.46 E-value=0.2 Score=43.06 Aligned_cols=35 Identities=29% Similarity=0.642 Sum_probs=29.6
Q ss_pred CeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecc
Q psy16252 16 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 51 (545)
Q Consensus 16 ~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~ 51 (545)
+.+++|||||++|.+|+..|+.. +...+|..+.|.
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~-~~~~~v~~~~r~ 37 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARK 37 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHC-TTCCEEECCBSS
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CCeEEEEEEeCC
Confidence 68999999999999999999985 456677777764
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=87.90 E-value=0.63 Score=38.29 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=26.2
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+..+|.|.| +|++|+..++.|.+. +++.-|.+..|++
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~-~~~elvav~~~~~ 38 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQ-PDMDLVGIFSRRA 38 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTC-SSEEEEEEEESSS
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhC-CCcEEEEEEeccc
Confidence 357899998 699999999988875 5554444444543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.79 E-value=0.52 Score=37.18 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEeccccccchHHHHHHHhh
Q psy16252 99 EILMTGATGFLGKLLIEKLLRS 120 (545)
Q Consensus 99 ~VlITGatGflG~~l~~~Ll~~ 120 (545)
+|.|.|++|-+|+.+++.+.+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~ 22 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA 22 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS
T ss_pred CEEEECCCCHHHHHHHHHHHhC
Confidence 6899999999999999988776
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=87.36 E-value=0.26 Score=41.21 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=28.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.|.+|+|+|| |-+|...+..+...|. .+|++..+++
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga--~~Vi~~~~~~ 63 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGA--ENVIVIAGSP 63 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTB--SEEEEEESCH
T ss_pred CCCEEEEECC-Cccchhheeccccccc--cccccccccc
Confidence 4799999997 8899888877777653 4788887753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=87.05 E-value=0.91 Score=34.33 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=27.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEec
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R 132 (545)
.+|++|+|.|+ |-+|..-++.|++.|. +|.+...
T Consensus 10 l~~k~vlVvG~-G~va~~ka~~ll~~ga---~v~v~~~ 43 (113)
T d1pjqa1 10 LRDRDCLIVGG-GDVAERKARLLLEAGA---RLTVNAL 43 (113)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTB---EEEEEES
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEec
Confidence 56899999995 8899999999999864 4555543
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=86.99 E-value=0.2 Score=40.45 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=28.7
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.|+|.|.|+||.||+..++-+.+. ++--+|+++.=.+
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~-~d~f~v~~lsa~~ 38 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERN-LDRYQVIALTANR 38 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT-GGGEEEEEEEESS
T ss_pred CcEEEEECCCcHHHHHHHHHHHcC-CCCcEEEEEEeCC
Confidence 489999999999999999877664 4444788775443
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=86.74 E-value=0.23 Score=40.98 Aligned_cols=75 Identities=12% Similarity=0.192 Sum_probs=43.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCHH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPD 175 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~~ 175 (545)
.|.+|+|.|+ |-+|...+..+...|. ++++..++... .+...+ +. .+.+-|.. +.+
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga---~~i~~~~~~~~---~~~a~~-lG----------ad~~i~~~------~~~ 85 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGA---HVVAFTTSEAK---REAAKA-LG----------ADEVVNSR------NAD 85 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSGGG---HHHHHH-HT----------CSEEEETT------CHH
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccc---cchhhccchhH---HHHHhc-cC----------CcEEEECc------hhh
Confidence 4799999996 8899888866666553 45566665431 111111 11 10000222 334
Q ss_pred HHHHHhcCccEEEEccccc
Q psy16252 176 DKRLVTSKVNLVFHCAATL 194 (545)
Q Consensus 176 ~~~~l~~~vd~Vih~Aa~~ 194 (545)
......+++|+||.+.+..
T Consensus 86 ~~~~~~~~~D~vid~~g~~ 104 (168)
T d1uufa2 86 EMAAHLKSFDFILNTVAAP 104 (168)
T ss_dssp HHHTTTTCEEEEEECCSSC
T ss_pred HHHHhcCCCceeeeeeecc
Confidence 4445556899999998753
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.71 E-value=0.32 Score=42.05 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=28.4
Q ss_pred CeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEec
Q psy16252 16 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 50 (545)
Q Consensus 16 ~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir 50 (545)
..+|+|||||++|..|+..|++....+ .+.++.|
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v-~v~~~~R 37 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVR 37 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTC-EEEEEES
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcE-EEEEEcC
Confidence 479999999999999999999875444 5667777
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=86.68 E-value=0.31 Score=45.27 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=29.2
Q ss_pred CCeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecc
Q psy16252 15 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 51 (545)
Q Consensus 15 ~~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~ 51 (545)
|+.+|+|||+||+|..|+..|++.. -++..++|.
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G---~~V~~~vR~ 44 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHG---YKVRGTARS 44 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESS
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEeCC
Confidence 8999999999999999999999963 356677873
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=86.42 E-value=0.73 Score=37.57 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.7
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI 130 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l 130 (545)
+.||+|+|.|.+..+|+-|...|.+.|. .|+..
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~ga---tVt~~ 67 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAGC---TTTVT 67 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTC---EEEEE
T ss_pred cccceEEEEeccccccHHHHHHHHHhhc---ccccc
Confidence 5689999999999999999999988754 55543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=86.33 E-value=0.16 Score=42.53 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=29.3
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
+.+|||+||+|.+|...++.....|. +|++.+|++.
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga---~Via~~~~~~ 67 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGY---QVVAVSGRES 67 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCGG
T ss_pred CCcEEEEEccccchHHHHHHHHHcCC---CeEEEecchh
Confidence 45899999999999998877766654 6888888754
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.09 E-value=1.7 Score=35.51 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=28.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEE
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVI 130 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l 130 (545)
+.||+|.|.|.+..+|+-|+..|+++|. .|+..
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~ga---tVt~~ 69 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNNA---TVTTC 69 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEE
T ss_pred cccceEEEEecCCccchHHHHHHHhccC---ceEEE
Confidence 5799999999999999999999999854 55543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.03 E-value=0.52 Score=38.67 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=29.2
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+.+|+|.|++|-+|...+..+...|. ..|++..++
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~--~~V~~~~~~ 62 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVR 62 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESS
T ss_pred CCCEEEEEeccccceeeeeeccccccc--ccccccccc
Confidence 368999999999999988888877753 478877765
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=85.57 E-value=0.59 Score=39.16 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=27.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
++|.|.|| |.+|+.++..++..|+ .|.+..+++
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G~---~V~l~D~~~ 37 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKGT---PILMKDINE 37 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTTC---CEEEECSSH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC---eEEEEECCH
Confidence 67999998 9999999999999876 477777753
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=85.46 E-value=0.52 Score=42.20 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=30.9
Q ss_pred CCeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecccCCC
Q psy16252 15 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ 55 (545)
Q Consensus 15 ~~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~~~~~ 55 (545)
.+.+++|||||++|.+|+..|+++. -++.++.|.....
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G---~~V~~l~R~~~~~ 40 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTAS 40 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCCCCTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEECCCccc
Confidence 4679999999999999999999864 3678888854443
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=85.37 E-value=0.36 Score=39.65 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=30.9
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
+||+|+|.|| |+.|-.++..|.+.++++ +|+++.+.+
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~-~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSI-EVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTS-EEEEECSCS
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCC-cEEEEECCC
Confidence 3799999996 999999999999988765 677776654
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=85.37 E-value=0.61 Score=38.86 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=45.0
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCCcccCCCCCCCCCCH
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSP 174 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~Dl~~~~lgl~~ 174 (545)
+.|++|.|.| .|-||+.+++.|..-|. +|+...|.+... +.. -.
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g~---~v~~~d~~~~~~--------------------------~~~------~~ 83 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALGA---QVRGFSRTPKEG--------------------------PWR------FT 83 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTTC---EEEEECSSCCCS--------------------------SSC------CB
T ss_pred ccCceEEEec-cccccccceeeeecccc---cccccccccccc--------------------------cee------ee
Confidence 5789999999 58899999999988753 688877765421 111 11
Q ss_pred HHHHHHhcCccEEEEcccc
Q psy16252 175 DDKRLVTSKVNLVFHCAAT 193 (545)
Q Consensus 175 ~~~~~l~~~vd~Vih~Aa~ 193 (545)
+++++++..+|+|+-+...
T Consensus 84 ~~l~ell~~sDiv~~~~pl 102 (181)
T d1qp8a1 84 NSLEEALREARAAVCALPL 102 (181)
T ss_dssp SCSHHHHTTCSEEEECCCC
T ss_pred echhhhhhccchhhccccc
Confidence 2467888999988766543
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.80 E-value=0.11 Score=36.62 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=26.8
Q ss_pred hhcCCCeEEEEcchhhhHHHHHHHHHhhCCC
Q psy16252 11 DFYEGAEILMTGATGFLGKLLIEKLLRSFPR 41 (545)
Q Consensus 11 ~~~~~~~~f~~Ggts~l~~~Ll~~l~~~~~~ 41 (545)
+--.+++||++|++|+++.+|..+|.+.++.
T Consensus 24 ~I~~~~~f~~lG~DSl~a~el~~~i~~~~g~ 54 (76)
T d2pnga1 24 GINLDSSLADLGLDSLMGVEVRQILEREHDL 54 (76)
T ss_dssp TSCSSSCHHHHTCSSHHHHHHHHHHHHHTCC
T ss_pred hCCCCCCHHHhCCcHHHHHHHHHHHHHHhCC
Confidence 3445789999999999999999999998744
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.62 E-value=1.4 Score=37.10 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=26.7
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
|+|.|.| .|++|..++..|.+.|+ +|+++..+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~---~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGH---EVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC---EEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCC---cEEEEeCC
Confidence 5788996 79999999999999987 67887654
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=84.26 E-value=0.36 Score=44.87 Aligned_cols=28 Identities=29% Similarity=0.676 Sum_probs=24.2
Q ss_pred CeEEEEcchhhhHHHHHHHHHhhCCCcc
Q psy16252 16 AEILMTGATGFLGKLLIEKLLRSFPRVK 43 (545)
Q Consensus 16 ~~~f~~Ggts~l~~~Ll~~l~~~~~~v~ 43 (545)
++||+||||||+|.+|+..|++....+.
T Consensus 3 mkILVTGgtGfIGs~lv~~L~~~g~~v~ 30 (346)
T d1oc2a_ 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVH 30 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCeE
Confidence 5799999999999999999999854443
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=83.81 E-value=0.11 Score=37.45 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.4
Q ss_pred ChhhhcCCCeEEEEcchhhhHHHHHHHHHhhCCC
Q psy16252 8 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPR 41 (545)
Q Consensus 8 ~~~~~~~~~~~f~~Ggts~l~~~Ll~~l~~~~~~ 41 (545)
+..+.-.+.+||++|++|+.+..|+..|.++|+.
T Consensus 18 ~~~~i~~~~~f~dlG~DSl~~~~l~~~le~~f~v 51 (83)
T d2jq4a1 18 PVDTIADEADLYAAGLSSFASVQLMLGIEEAFDI 51 (83)
T ss_dssp CGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSC
T ss_pred CHHHcCCCCCHHHHhCccHHHHHHHHHHHHHHCC
Confidence 4556667889999999999999999999998744
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.81 E-value=0.39 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=22.8
Q ss_pred CCeEEEEcchhhhHHHHHHHHHhhC
Q psy16252 15 GAEILMTGATGFLGKLLIEKLLRSF 39 (545)
Q Consensus 15 ~~~~f~~Ggts~l~~~Ll~~l~~~~ 39 (545)
.+.|++||||||+|..|+..|++..
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g 26 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAG 26 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCc
Confidence 4689999999999999999999864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.65 E-value=1.6 Score=36.56 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=28.8
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
++|.|.|| |.+|+.++..++..|+ .|.+..+++
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~---~V~l~D~~~ 37 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGH---TVVLVDQTE 37 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCC---cEEEEECCh
Confidence 78999998 9999999999999876 678777764
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=83.47 E-value=0.7 Score=41.59 Aligned_cols=39 Identities=23% Similarity=0.504 Sum_probs=31.2
Q ss_pred CCeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEecccCCCC
Q psy16252 15 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS 56 (545)
Q Consensus 15 ~~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~~~~~~ 56 (545)
.+.|++|||||++|..|+..|+.+. .++.++.|......
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G---~~V~~~~R~~~~~~ 41 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSN 41 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCSCCSSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCCcccc
Confidence 3469999999999999999999863 46778888655444
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=83.12 E-value=0.45 Score=38.32 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=27.9
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
|+|.|.|+||.||+..++-+.+. ++--+|+++.=.
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~-~d~f~v~~Lsa~ 36 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHN-PEHFRVVALVAG 36 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHC-TTTEEEEEEEES
T ss_pred CeEEEEcCCcHHHHHHHHHHHhC-CCCcEEEEEEec
Confidence 68999999999999999877665 444578887644
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.02 E-value=0.33 Score=46.03 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCeEEEEcchhhhHHHHHHHHHhhCCCc
Q psy16252 15 GAEILMTGATGFLGKLLIEKLLRSFPRV 42 (545)
Q Consensus 15 ~~~~f~~Ggts~l~~~Ll~~l~~~~~~v 42 (545)
|+.+|+||||||+|.+|+..|++....|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V 28 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEV 28 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEE
Confidence 5789999999999999999999975443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=83.01 E-value=0.67 Score=38.31 Aligned_cols=78 Identities=14% Similarity=0.058 Sum_probs=45.3
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCCCCCHHHHHHhhHHHHHHhhhhcCCC-cccCCCCCCCCCCH
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST-SKESAQAPDLGLSP 174 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~~~~~~~~~~-~~~Dl~~~~lgl~~ 174 (545)
.|.+|+|.|+ |.+|...+..+...|. .+|++..+++ +|++...+ + ... .+ |..+++ ..
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga--~~Vi~~d~~~------~r~~~a~~-----l---Ga~~~i-~~~~~~---~~ 85 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGA--GRIIGVGSRP------ICVEAAKF-----Y---GATDIL-NYKNGH---IE 85 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTC--SCEEEECCCH------HHHHHHHH-----H---TCSEEE-CGGGSC---HH
T ss_pred CCCEEEEEcC-Ccchhhhhhhhhcccc--cccccccchh------hhHHHHHh-----h---Cccccc-cccchh---HH
Confidence 4789999986 9999887777766653 4688776642 23322111 0 000 01 222221 23
Q ss_pred HHHHHHhc--CccEEEEccccc
Q psy16252 175 DDKRLVTS--KVNLVFHCAATL 194 (545)
Q Consensus 175 ~~~~~l~~--~vd~Vih~Aa~~ 194 (545)
+.+.++.. ++|+||.+++..
T Consensus 86 ~~v~~~t~g~G~D~vid~~g~~ 107 (174)
T d1jqba2 86 DQVMKLTNGKGVDRVIMAGGGS 107 (174)
T ss_dssp HHHHHHTTTSCEEEEEECSSCT
T ss_pred HHHHHHhhccCcceEEEccCCH
Confidence 44555543 599999999864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=82.90 E-value=1.2 Score=36.65 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=26.4
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
.+.+|+|.|+ |.+|...+..+...|. ..|++..++
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~--~~v~~~~~~ 62 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGA--SIIIAVDIV 62 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTC--SEEEEEESC
T ss_pred CCCEEEEeCC-CHHHhhhhhccccccc--ceeeeeccH
Confidence 4789999997 9999998877777764 356665554
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=82.27 E-value=1 Score=36.36 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=25.2
Q ss_pred CcEEEEeccccccchHHHHHHHhhCCCcCEEEEEe-cC
Q psy16252 97 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV-RA 133 (545)
Q Consensus 97 ~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~-R~ 133 (545)
..+|.|.| ||.+|+.++.++++..+ ..+++++. |+
T Consensus 4 kirvaIIG-aG~ig~~~~~~~l~~~~-~~el~avas~~ 39 (157)
T d1nvmb1 4 KLKVAIIG-SGNIGTDLMIKVLRNAK-YLEMGAMVGID 39 (157)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHCS-SEEEEEEECSC
T ss_pred CcEEEEEc-CcHHHHHHHHHHHhhCC-cceEEEEEecc
Confidence 46899999 89999987666776544 34676664 44
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=82.24 E-value=0.49 Score=41.65 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=30.5
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
.++++|+|.|+ |.+|++++..|.+.| |.++.++....
T Consensus 28 L~~~~VliiG~-GglGs~va~~La~~G--vg~i~lvD~D~ 64 (247)
T d1jw9b_ 28 LKDSRVLIVGL-GGLGCAASQYLASAG--VGNLTLLDFDT 64 (247)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCB
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHcC--CCeEEEECCcc
Confidence 56799999995 779999999999995 77888876543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.87 E-value=0.4 Score=39.43 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=27.5
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~~ 135 (545)
.|.+|+|.|+ |.+|...+..+...|. +|+++.+++.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~---~vi~~~~~~~ 62 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGA---ETYVISRSSR 62 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEESSST
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccc---cccccccchh
Confidence 4789999997 8999887766655553 6888888654
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=81.83 E-value=0.29 Score=41.63 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=28.4
Q ss_pred hcCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecC
Q psy16252 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRA 133 (545)
Q Consensus 95 ~~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~ 133 (545)
..|++|.|.| .|-||+.+++.|..-|. +|++..+.
T Consensus 41 l~gk~vgIiG-~G~IG~~va~~l~~fg~---~V~~~d~~ 75 (197)
T d1j4aa1 41 VRDQVVGVVG-TGHIGQVFMQIMEGFGA---KVITYDIF 75 (197)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred ccCCeEEEec-ccccchhHHHhHhhhcc---cccccCcc
Confidence 5689999999 79999999999977653 67766554
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=81.62 E-value=0.78 Score=37.56 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=30.2
Q ss_pred cCcEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 96 ~~~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
++++|+|.|+ |..|++++..|.+.| +.+|+++.|+.
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g--~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSG--FEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTT--CCCEEEECSCH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCC--CCEEEEecccH
Confidence 3688999997 889999999999985 45788888874
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=81.57 E-value=1 Score=36.49 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=27.3
Q ss_pred cEEEEeccccccchHHHHHHHhhCCCcCEEEEEecCC
Q psy16252 98 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 134 (545)
Q Consensus 98 ~~VlITGatGflG~~l~~~Ll~~g~~v~~V~~l~R~~ 134 (545)
|+|.|.| .|.+|..+++.|++.|+ .|++..|.+
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~---~V~~~d~~~ 33 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGY---SLVVSDRNP 33 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCC---eEEEEeCCc
Confidence 5688887 59999999999999987 577777753
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.34 E-value=0.43 Score=43.62 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=28.2
Q ss_pred CeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEeccc
Q psy16252 16 AEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAK 52 (545)
Q Consensus 16 ~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir~~ 52 (545)
+++|+||||||+|..|+..|+++. -+|+.+.|..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g---~~V~~~~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG---YRVHGLVARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCC
Confidence 579999999999999999998863 3677777743
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=81.19 E-value=0.58 Score=42.55 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=21.8
Q ss_pred CCeEEEEcchhhhHHHHHHHHHhh
Q psy16252 15 GAEILMTGATGFLGKLLIEKLLRS 38 (545)
Q Consensus 15 ~~~~f~~Ggts~l~~~Ll~~l~~~ 38 (545)
.+.|++|||||++|..|+..|++.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~ 25 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQR 25 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC
Confidence 357999999999999999999885
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.07 E-value=0.44 Score=43.53 Aligned_cols=24 Identities=42% Similarity=0.703 Sum_probs=22.1
Q ss_pred CeEEEEcchhhhHHHHHHHHHhhC
Q psy16252 16 AEILMTGATGFLGKLLIEKLLRSF 39 (545)
Q Consensus 16 ~~~f~~Ggts~l~~~Ll~~l~~~~ 39 (545)
+.||+|||+||+|..|+..|++..
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g 25 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDG 25 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc
Confidence 679999999999999999998864
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.72 E-value=0.46 Score=43.96 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=27.3
Q ss_pred CCeEEEEcchhhhHHHHHHHHHhhCCCccEEEEEec
Q psy16252 15 GAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 50 (545)
Q Consensus 15 ~~~~f~~Ggts~l~~~Ll~~l~~~~~~v~~i~~lir 50 (545)
-+.||+|||||++|+.|+..|.+.. -+|..+.+
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g---~~V~~~d~ 48 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLD---QKVVGLDN 48 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEEC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCc---CEEEEEEC
Confidence 4689999999999999999999864 25666665
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=80.40 E-value=0.48 Score=43.45 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.2
Q ss_pred eEEEEcchhhhHHHHHHHHHhhC
Q psy16252 17 EILMTGATGFLGKLLIEKLLRSF 39 (545)
Q Consensus 17 ~~f~~Ggts~l~~~Ll~~l~~~~ 39 (545)
.||+||||||+|.+|+..|+++.
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g 24 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG 24 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT
T ss_pred EEEEECCCcHHHHHHHHHHHHCc
Confidence 68999999999999999999863
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.14 E-value=0.92 Score=35.86 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=27.7
Q ss_pred cCcEEEEeccc---cccchHHHHHHHhhCCCcCEEEEEe
Q psy16252 96 EGAEILMTGAT---GFLGKLLIEKLLRSFPRVKTIYVIV 131 (545)
Q Consensus 96 ~~~~VlITGat---GflG~~l~~~Ll~~g~~v~~V~~l~ 131 (545)
+.++|.|.||| |-.|..+++.|++.|+ +|+.+.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~---~v~pVn 53 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGY---DVYPVN 53 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEEC
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCC---EEEEEC
Confidence 46899999998 7899999999999876 577553
|