Psyllid ID: psy16262

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYIDCSPYIPTYPNAVLSCGIVEV
cccccccccccHHHHHHHHHccccccccccccccccccEEEEccccEEEEHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHccccccccEEccccccccccccccccEEEEEccccccccccccccccccEEEEcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEc
ccccHHHHcccHHHHHHHHHccccccccccccccccEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccEEccccccccHHHHHHHHcccccEEEEEccccccHHHHHHHcccccEEEEEcccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccccHEEcccccccccccEEEEccEEEc
msggldilslkedDVTKMLGAqthigsensdYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIehpadvfvissrpigqRAVLKFAsytgatpiagrftpgafTNQIQAAfreprllvvtdphtdhqpiteaayvnipviafcntesplrfvdiaipcnnksphsIGLMWWLLAREVLRFRgvigpdyltilgtyidcspyiptypnavlscgivev
msggldilSLKEDDVTKMLGaqthigsensdyQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYIDCSPYIPTYPNAVLSCGIVEV
MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYIDCSPYIPTYPNAVLSCGIVEV
*******************************YQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYIDCSPYIPTYPNAVLSCGIV**
*****DILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYIDCSPYIPTYPNAVLSCGIVEV
MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYIDCSPYIPTYPNAVLSCGIVEV
****LDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYIDCSPYIPTYPNAVLSCGIVEV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYIDCSPYIPTYPNAVLSCGIVEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query222 2.2.26 [Sep-21-2011]
Q0PXX8301 40S ribosomal protein SA N/A N/A 0.851 0.627 0.994 1e-109
Q5UAP4306 40S ribosomal protein SA N/A N/A 0.864 0.627 0.817 1e-92
B4NPT0270 40S ribosomal protein SA N/A N/A 0.855 0.703 0.842 5e-92
B4JXG8272 40S ribosomal protein SA N/A N/A 0.851 0.694 0.841 6e-92
B4MB32271 40S ribosomal protein SA N/A N/A 0.855 0.701 0.836 6e-92
B4L760271 40S ribosomal protein SA N/A N/A 0.855 0.701 0.836 6e-92
B3P9J3270 40S ribosomal protein SA N/A N/A 0.855 0.703 0.836 8e-92
B4PY37270 40S ribosomal protein SA N/A N/A 0.855 0.703 0.836 1e-91
Q0H6L0270 40S ribosomal protein SA N/A N/A 0.855 0.703 0.836 1e-91
Q0H6L1270 40S ribosomal protein SA N/A N/A 0.855 0.703 0.836 1e-91
>sp|Q0PXX8|RSSA_DIACI 40S ribosomal protein SA OS=Diaphorina citri PE=2 SV=1 Back     alignment and function desciption
 Score =  394 bits (1011), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/189 (99%), Positives = 188/189 (99%)

Query: 1   MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLL 60
           MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLL
Sbjct: 1   MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLL 60

Query: 61  AARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPR 120
           AARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPR
Sbjct: 61  AARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPR 120

Query: 121 LLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180
           LLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR
Sbjct: 121 LLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180

Query: 181 EVLRFRGVI 189
           EVLRFRG I
Sbjct: 181 EVLRFRGTI 189
Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
Diaphorina citri (taxid: 121845)
>sp|Q5UAP4|RSSA_BOMMO 40S ribosomal protein SA OS=Bombyx mori PE=2 SV=1 Back     alignment and function description
>sp|B4NPT0|RSSA_DROWI 40S ribosomal protein SA OS=Drosophila willistoni GN=sta PE=3 SV=1 Back     alignment and function description
>sp|B4JXG8|RSSA_DROGR 40S ribosomal protein SA OS=Drosophila grimshawi GN=sta PE=3 SV=1 Back     alignment and function description
>sp|B4MB32|RSSA_DROVI 40S ribosomal protein SA OS=Drosophila virilis GN=sta PE=3 SV=1 Back     alignment and function description
>sp|B4L760|RSSA_DROMO 40S ribosomal protein SA OS=Drosophila mojavensis GN=sta PE=3 SV=1 Back     alignment and function description
>sp|B3P9J3|RSSA_DROER 40S ribosomal protein SA OS=Drosophila erecta GN=sta PE=3 SV=1 Back     alignment and function description
>sp|B4PY37|RSSA_DROYA 40S ribosomal protein SA OS=Drosophila yakuba GN=sta PE=2 SV=1 Back     alignment and function description
>sp|Q0H6L0|RSSA_DROTE 40S ribosomal protein SA OS=Drosophila teissieri GN=sta PE=3 SV=1 Back     alignment and function description
>sp|Q0H6L1|RSSA_DROSI 40S ribosomal protein SA OS=Drosophila simulans GN=sta PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
122066029301 RecName: Full=40S ribosomal protein SA g 0.851 0.627 0.994 1e-107
242013672288 40S ribosomal protein SA, putative [Pedi 0.851 0.656 0.851 9e-93
156548613317 PREDICTED: 40S ribosomal protein SA-like 0.851 0.596 0.848 7e-92
315115409306 ribosomal protein SA [Euphydryas aurinia 0.864 0.627 0.828 7e-92
357628132309 40S ribosomal protein SA [Danaus plexipp 0.864 0.621 0.828 2e-91
91089051302 PREDICTED: similar to ribosome-associate 0.851 0.625 0.846 2e-91
389611625242 stubarista [Papilio xuthus] 0.864 0.793 0.828 2e-91
389610689308 stubarista [Papilio polytes] 0.864 0.623 0.828 2e-91
342356397303 ribosomal protein SA [Heliconius melpome 0.864 0.633 0.822 3e-91
162952033306 40S ribosomal protein SA [Bombyx mori] g 0.864 0.627 0.817 6e-91
>gi|122066029|sp|Q0PXX8.1|RSSA_DIACI RecName: Full=40S ribosomal protein SA gi|110671460|gb|ABG81981.1| putative 40S ribosomal protein SA [Diaphorina citri] Back     alignment and taxonomy information
 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/189 (99%), Positives = 188/189 (99%)

Query: 1   MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLL 60
           MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLL
Sbjct: 1   MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLL 60

Query: 61  AARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPR 120
           AARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPR
Sbjct: 61  AARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPR 120

Query: 121 LLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180
           LLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR
Sbjct: 121 LLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180

Query: 181 EVLRFRGVI 189
           EVLRFRG I
Sbjct: 181 EVLRFRGTI 189

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242013672|ref|XP_002427526.1| 40S ribosomal protein SA, putative [Pediculus humanus corporis] gi|212511928|gb|EEB14788.1| 40S ribosomal protein SA, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|156548613|ref|XP_001608082.1| PREDICTED: 40S ribosomal protein SA-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|315115409|gb|ADT80677.1| ribosomal protein SA [Euphydryas aurinia] Back     alignment and taxonomy information
>gi|357628132|gb|EHJ77563.1| 40S ribosomal protein SA [Danaus plexippus] Back     alignment and taxonomy information
>gi|91089051|ref|XP_970069.1| PREDICTED: similar to ribosome-associated protein P40 [Tribolium castaneum] gi|270012401|gb|EFA08849.1| hypothetical protein TcasGA2_TC006550 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|389611625|dbj|BAM19404.1| stubarista [Papilio xuthus] Back     alignment and taxonomy information
>gi|389610689|dbj|BAM18956.1| stubarista [Papilio polytes] Back     alignment and taxonomy information
>gi|342356397|gb|AEL28857.1| ribosomal protein SA [Heliconius melpomene cythera] Back     alignment and taxonomy information
>gi|162952033|ref|NP_001106143.1| 40S ribosomal protein SA [Bombyx mori] gi|74904851|sp|Q5UAP4.1|RSSA_BOMMO RecName: Full=40S ribosomal protein SA gi|54609281|gb|AAV34856.1| ribosomal protein SA [Bombyx mori] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
FB|FBgn0003517313 sta "stubarista" [Drosophila m 0.851 0.603 0.841 3.9e-83
UNIPROTKB|P50890296 RPSA "40S ribosomal protein SA 0.869 0.652 0.766 7.6e-80
UNIPROTKB|Q6P8D1306 rpsa "40S ribosomal protein SA 0.869 0.630 0.766 9.7e-80
RGD|71026295 Rpsa "ribosomal protein SA" [R 0.869 0.654 0.761 1.2e-79
ZFIN|ZDB-GENE-040426-811308 rpsa "ribosomal protein SA" [D 0.869 0.626 0.761 3.3e-79
UNIPROTKB|P26452295 RPSA "40S ribosomal protein SA 0.869 0.654 0.756 5.4e-79
UNIPROTKB|E2RJ06314 RPSA "Uncharacterized protein" 0.869 0.614 0.756 5.4e-79
UNIPROTKB|J9JHJ2295 RPSA "Uncharacterized protein" 0.869 0.654 0.756 5.4e-79
UNIPROTKB|C9J9K3264 RPSA "40S ribosomal protein SA 0.869 0.731 0.756 5.4e-79
UNIPROTKB|P08865295 RPSA "40S ribosomal protein SA 0.869 0.654 0.756 5.4e-79
FB|FBgn0003517 sta "stubarista" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 159/189 (84%), Positives = 174/189 (92%)

Query:     1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLL 60
             MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DGV+ILNL +TWEKL L
Sbjct:    44 MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQL 103

Query:    61 AARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPR 120
             AARAIVAI++P+D+FVISSRPIGQRAVLKFA YT  TPIAGRFTPGAFTNQIQ AFREPR
Sbjct:   104 AARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPR 163

Query:   121 LLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180
             LLVVTDP+TDHQPI EA+YVNIPVIAF NT+SPLR++DIAIPCNNKS HSIGLMWWLLAR
Sbjct:   164 LLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAR 223

Query:   181 EVLRFRGVI 189
             EVLR RG I
Sbjct:   224 EVLRLRGTI 232
GO:0003735 "structural constituent of ribosome" evidence=ISS;IBA;IDA;NAS
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IBA;NAS
GO:0006412 "translation" evidence=ISS;IBA;NAS
GO:0043022 "ribosome binding" evidence=IPI
GO:0005840 "ribosome" evidence=NAS;IDA
GO:0005811 "lipid particle" evidence=IDA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0006407 "rRNA export from nucleus" evidence=IBA
GO:0000028 "ribosomal small subunit assembly" evidence=IBA
GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA
GO:0030686 "90S preribosome" evidence=IBA
GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA
UNIPROTKB|P50890 RPSA "40S ribosomal protein SA" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P8D1 rpsa "40S ribosomal protein SA" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
RGD|71026 Rpsa "ribosomal protein SA" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-811 rpsa "ribosomal protein SA" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P26452 RPSA "40S ribosomal protein SA" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJ06 RPSA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHJ2 RPSA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|C9J9K3 RPSA "40S ribosomal protein SA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P08865 RPSA "40S ribosomal protein SA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B4PY37RSSA_DROYANo assigned EC number0.83680.85580.7037N/AN/A
B4JXG8RSSA_DROGRNo assigned EC number0.84120.85130.6948N/AN/A
Q90YS4RSSA_ICTPUNo assigned EC number0.75640.86930.6088N/AN/A
Q0H6L1RSSA_DROSINo assigned EC number0.83680.85580.7037N/AN/A
Q0H6L0RSSA_DROTENo assigned EC number0.83680.85580.7037N/AN/A
P50890RSSA_CHICKNo assigned EC number0.76680.86930.6520yesN/A
Q16ZR8RSSA_AEDAENo assigned EC number0.79590.88280.6805N/AN/A
Q4QY71RSSA_SPAAUNo assigned EC number0.75120.86930.6348N/AN/A
B4L760RSSA_DROMONo assigned EC number0.83680.85580.7011N/AN/A
A2Q0U8RSSA_SOLSENo assigned EC number0.74090.86930.6166N/AN/A
P38980RSSA_TRIGRNo assigned EC number0.78120.86480.6075N/AN/A
P38982RSSA_CRIGRNo assigned EC number0.75120.86930.6542yesN/A
P38983RSSA_RATNo assigned EC number0.76160.86930.6542yesN/A
B3MRX2RSSA_DROANNo assigned EC number0.83150.85580.7037N/AN/A
B4MB32RSSA_DROVINo assigned EC number0.83680.85580.7011N/AN/A
B3RPX6RSSA_TRIADNo assigned EC number0.74470.86480.6713N/AN/A
P14206RSSA_MOUSENo assigned EC number0.75640.86930.6542yesN/A
A2I3Z2RSSA_MACHINo assigned EC number0.80200.86480.6233N/AN/A
A6YRY8RSSA_SHEEPNo assigned EC number0.75640.86930.6542N/AN/A
Q6P8D1RSSA_XENTRNo assigned EC number0.76680.86930.6307yesN/A
P26452RSSA_BOVINNo assigned EC number0.75640.86930.6542yesN/A
Q7PZ81RSSA_ANOGANo assigned EC number0.77150.88730.6912yesN/A
A6NA00RSSA_ORNPRNo assigned EC number0.75130.85130.6321N/AN/A
Q5UAP4RSSA_BOMMONo assigned EC number0.81770.86480.6274N/AN/A
B5FXT6RSSA_TAEGUNo assigned EC number0.76680.86930.6520yesN/A
B4GTK1RSSA_DROPENo assigned EC number0.83680.85580.7037N/AN/A
B4I9F6RSSA_DROSENo assigned EC number0.83680.85580.7037N/AN/A
B3P9J3RSSA_DROERNo assigned EC number0.83680.85580.7037N/AN/A
Q2L9X0RSSA_CHLAENo assigned EC number0.75640.86930.6542N/AN/A
Q0PXX8RSSA_DIACINo assigned EC number0.99470.85130.6279N/AN/A
Q3ZM03RSSA_XENLANo assigned EC number0.77200.86930.6307N/AN/A
Q4GWZ2RSSA_PIGNo assigned EC number0.75640.86930.6542yesN/A
P08865RSSA_HUMANNo assigned EC number0.75640.86930.6542yesN/A
B4NPT0RSSA_DROWINo assigned EC number0.84210.85580.7037N/AN/A
A7RKS5RSSA_NEMVENo assigned EC number0.76710.85130.6096N/AN/A
P38979RSSA_DROMENo assigned EC number0.83680.85580.6070noN/A
Q29J14RSSA_DROPSNo assigned EC number0.83680.85580.7037yesN/A
B5DGB6RSSA_SALSANo assigned EC number0.74090.86930.6088N/AN/A
B0X6V0RSSA_CULQUNo assigned EC number0.77720.86930.6655N/AN/A
A3RLT6RSSA_PINFUNo assigned EC number0.79790.86930.6411N/AN/A
Q803F6RSSA_DANRENo assigned EC number0.76160.86930.6266yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
PTZ00254249 PTZ00254, PTZ00254, 40S ribosomal protein SA; Prov 1e-126
TIGR01012196 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosol 1e-102
cd01425193 cd01425, RPS2, Ribosomal protein S2 (RPS2), involv 3e-67
PRK04020204 PRK04020, rps2P, 30S ribosomal protein S2; Provisi 1e-66
pfam00318205 pfam00318, Ribosomal_S2, Ribosomal protein S2 1e-59
COG0052252 COG0052, RpsB, Ribosomal protein S2 [Translation, 3e-53
TIGR01011225 TIGR01011, rpsB_bact, ribosomal protein S2, bacter 1e-13
PRK05299258 PRK05299, rpsB, 30S ribosomal protein S2; Provisio 1e-07
CHL00067230 CHL00067, rps2, ribosomal protein S2 0.003
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional Back     alignment and domain information 
 Score =  357 bits (918), Expect = e-126
 Identities = 129/189 (68%), Positives = 153/189 (80%)

Query: 1   MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLL 60
           +S G  +L+ KEDD+ KML  + HIG++N +  M++YVYKR  +GVHI+NL +TWEKL L
Sbjct: 1   VSSGPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKL 60

Query: 61  AARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPR 120
           AAR I AIE+PADV V+SSRP GQRAVLKFA YTGA+ IAGRFTPG FTNQIQ  F EPR
Sbjct: 61  AARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPR 120

Query: 121 LLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180
           LL+VTDP TDHQ I EA+YVNIPVIA C+T+SPL +VDIAIPCNN+   SI LM+WLLAR
Sbjct: 121 LLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMYWLLAR 180

Query: 181 EVLRFRGVI 189
           EVLR RG +
Sbjct: 181 EVLRLRGTL 189

Length = 249
>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal) Back     alignment and domain information
>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome Back     alignment and domain information
>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional Back     alignment and domain information
>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2 Back     alignment and domain information
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type Back     alignment and domain information
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional Back     alignment and domain information
>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 222
PTZ00254249 40S ribosomal protein SA; Provisional 100.0
TIGR01012196 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa 100.0
PRK04020204 rps2P 30S ribosomal protein S2; Provisional 100.0
COG0052252 RpsB Ribosomal protein S2 [Translation, ribosomal 100.0
TIGR01011225 rpsB_bact ribosomal protein S2, bacterial type. TI 100.0
PRK05299258 rpsB 30S ribosomal protein S2; Provisional 100.0
PRK12311326 rpsB 30S ribosomal protein S2/unknown domain fusio 100.0
CHL00067230 rps2 ribosomal protein S2 100.0
cd01425193 RPS2 Ribosomal protein S2 (RPS2), involved in form 100.0
PF00318211 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR0 100.0
KOG0832|consensus251 100.0
KOG0830|consensus254 100.0
PRK05441299 murQ N-acetylmuramic acid-6-phosphate etherase; Re 95.59
cd05007257 SIS_Etherase N-acetylmuramic acid 6-phosphate ethe 95.54
PRK12570296 N-acetylmuramic acid-6-phosphate etherase; Reviewe 94.67
cd05006177 SIS_GmhA Phosphoheptose isomerase is a member of t 94.33
PRK13938196 phosphoheptose isomerase; Provisional 94.31
PRK00414192 gmhA phosphoheptose isomerase; Reviewed 94.0
TIGR03127179 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of 93.96
cd05005179 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI 93.67
PRK10886196 DnaA initiator-associating protein DiaA; Provision 92.82
PRK10892 326 D-arabinose 5-phosphate isomerase; Provisional 92.69
PF13580138 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_ 92.54
TIGR00274291 N-acetylmuramic acid 6-phosphate etherase. This pr 91.83
PRK13936197 phosphoheptose isomerase; Provisional 91.77
PF1008797 DUF2325: Uncharacterized protein conserved in bact 91.56
PRK11557278 putative DNA-binding transcriptional regulator; Pr 90.6
PRK15482285 transcriptional regulator MurR; Provisional 90.38
PRK11302284 DNA-binding transcriptional regulator HexR; Provis 89.96
cd05013139 SIS_RpiR RpiR-like protein. RpiR contains a SIS (S 88.97
cd05008126 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repea 87.79
cd05014128 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5 87.5
cd06295 275 PBP1_CelR Ligand binding domain of a transcription 87.42
PRK11337292 DNA-binding transcriptional repressor RpiR; Provis 87.38
COG0279176 GmhA Phosphoheptose isomerase [Carbohydrate transp 86.18
PF04007 335 DUF354: Protein of unknown function (DUF354); Inte 85.99
cd05710120 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISo 85.53
PRK13937188 phosphoheptose isomerase; Provisional 85.39
TIGR00441154 gmhA phosphoheptose isomerase. Involved in lipopol 85.12
PF01380131 SIS: SIS domain SIS domain web page.; InterPro: IP 84.71
PRK00331 604 glucosamine--fructose-6-phosphate aminotransferase 84.53
PRK14101638 bifunctional glucokinase/RpiR family transcription 84.5
PRK02947246 hypothetical protein; Provisional 84.02
cd06278 266 PBP1_LacI_like_2 Ligand-binding domain of uncharac 83.86
TIGR00393 268 kpsF KpsF/GutQ family protein. This model describe 83.44
PRK11382 340 frlB fructoselysine-6-P-deglycase; Provisional 80.79
>PTZ00254 40S ribosomal protein SA; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-69  Score=472.96  Aligned_cols=201  Identities=65%  Similarity=1.040  Sum_probs=196.5

Q ss_pred             CCCCcccccCCHHHHHHHHHcCceecCCcCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q psy16262          1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSR   80 (222)
Q Consensus         1 ~~~~~~~~~~~~~~~~~ll~a~~HlG~~~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~i~~~~~ILfv~t~   80 (222)
                      ||+++|+++++++++++||++|+||||++|||+|++||||+|+||+|||||++||++|++|++++..+.++++|||||||
T Consensus         1 ~~~~~~~~~~~~~~i~~lL~agvHlG~~~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr   80 (249)
T PTZ00254          1 VSSGPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAIENPADVVVVSSR   80 (249)
T ss_pred             CCCCcccCCCCHHHHHHHHhcCceeccCcCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            78999999999999999999999999999999999999998559999999999999999999999999899999999999


Q ss_pred             hhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEE
Q psy16262         81 PIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIA  160 (222)
Q Consensus        81 ~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~Idyp  160 (222)
                      ++++++|+++|+++|++||++||+||+||||+++.+++||+|||+||..|++||+||+++||||||||||||||++||||
T Consensus        81 ~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~  160 (249)
T PTZ00254         81 PYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIA  160 (249)
T ss_pred             HHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCCCcccCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchhHHHHHHHHHHHHHhhhCCCCCCCCccccccc
Q psy16262        161 IPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYI  201 (222)
Q Consensus       161 IP~Ndds~~si~li~~lL~~ai~~~~g~~~~~~~~~~~~~~  201 (222)
                      |||||||.+||.|++|+|+|+|+++||+++++.||+++.-.
T Consensus       161 IP~Ndds~~SI~li~~lLar~Vl~~rG~~~r~~~~~v~~d~  201 (249)
T PTZ00254        161 IPCNNRGKESIALMYWLLAREVLRLRGTLPRDEEWDVMVDL  201 (249)
T ss_pred             eCCCCchHHHHHHHHHHHHHHHHHhhCccccCCCCCcCcee
Confidence            99999999999999999999999999999999999998754

>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal) Back     alignment and domain information
>PRK04020 rps2P 30S ribosomal protein S2; Provisional Back     alignment and domain information
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type Back     alignment and domain information
>PRK05299 rpsB 30S ribosomal protein S2; Provisional Back     alignment and domain information
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional Back     alignment and domain information
>CHL00067 rps2 ribosomal protein S2 Back     alignment and domain information
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome Back     alignment and domain information
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG0832|consensus Back     alignment and domain information
>KOG0830|consensus Back     alignment and domain information
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed Back     alignment and domain information
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase Back     alignment and domain information
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed Back     alignment and domain information
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily Back     alignment and domain information
>PRK13938 phosphoheptose isomerase; Provisional Back     alignment and domain information
>PRK00414 gmhA phosphoheptose isomerase; Reviewed Back     alignment and domain information
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase Back     alignment and domain information
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI) Back     alignment and domain information
>PRK10886 DnaA initiator-associating protein DiaA; Provisional Back     alignment and domain information
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional Back     alignment and domain information
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D Back     alignment and domain information
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase Back     alignment and domain information
>PRK13936 phosphoheptose isomerase; Provisional Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PRK11557 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PRK15482 transcriptional regulator MurR; Provisional Back     alignment and domain information
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional Back     alignment and domain information
>cd05013 SIS_RpiR RpiR-like protein Back     alignment and domain information
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD) Back     alignment and domain information
>cd05014 SIS_Kpsf KpsF-like protein Back     alignment and domain information
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional Back     alignment and domain information
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>cd05710 SIS_1 A subgroup of the SIS domain Back     alignment and domain information
>PRK13937 phosphoheptose isomerase; Provisional Back     alignment and domain information
>TIGR00441 gmhA phosphoheptose isomerase Back     alignment and domain information
>PF01380 SIS: SIS domain SIS domain web page Back     alignment and domain information
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed Back     alignment and domain information
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional Back     alignment and domain information
>PRK02947 hypothetical protein; Provisional Back     alignment and domain information
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>TIGR00393 kpsF KpsF/GutQ family protein Back     alignment and domain information
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
2zkq_b295 Structure Of A Mammalian Ribosomal 40s Subunit With 4e-88
3bch_A253 Crystal Structure Of The Human Laminin Receptor Pre 3e-87
3iz6_A305 Localization Of The Small Subunit Ribosomal Protein 1e-69
3zey_C277 High-resolution Cryo-electron Microscopy Structure 1e-64
3jyv_B193 Structure Of The 40s Rrna And Proteins And PE TRNA 3e-63
3izb_A252 Localization Of The Small Subunit Ribosomal Protein 4e-63
1s1h_B185 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-62
2xzm_B241 Crystal Structure Of The Eukaryotic 40s Ribosomal S 1e-50
3j20_B202 Promiscuous Behavior Of Proteins In Archaeal Riboso 8e-39
1vi6_A208 Crystal Structure Of Ribosomal Protein S2p Length = 9e-33
1vi5_A208 Crystal Structure Of Ribosomal Protein S2p Length = 1e-31
1x18_E231 Contact Sites Of Era Gtpase On The Thermus Thermoph 9e-08
3fic_B235 T. Thermophilus 70s Ribosome In Complex With Mrna, 2e-07
2e5l_B227 A Snapshot Of The 30s Ribosomal Subunit Capturing M 2e-07
1pns_B234 Crystal Structure Of A Streptomycin Dependent Ribos 2e-07
1i94_B255 Crystal Structures Of The Small Ribosomal Subunit W 2e-07
1fjg_B256 Structure Of The Thermus Thermophilus 30s Ribosomal 2e-07
>pdb|2ZKQ|BB Chain b, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 295 Back     alignment and structure 
Iteration: 1

 Score =  320 bits (820), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 146/193 (75%), Positives = 169/193 (87%)
Query: 1   MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLL 60
           MSG LD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG++I+NL+RTWEKLLL
Sbjct: 1   MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 61  AARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPR 120
           AARAIVAIE+PADV VISSR  GQRAVLKFA+ TGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61  AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 121 LLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180
           LLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK  HS+GLMWW+LAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 181 EVLRFRGVIGPDY 193
           EVLR RG I  ++
Sbjct: 181 EVLRMRGTISREH 193
>pdb|3BCH|A Chain A, Crystal Structure Of The Human Laminin Receptor Precursor Length = 253 Back     alignment and structure
>pdb|3IZ6|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 305 Back     alignment and structure
>pdb|3ZEY|C Chain C, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 277 Back     alignment and structure
>pdb|3JYV|B Chain B, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 193 Back     alignment and structure
>pdb|3IZB|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 252 Back     alignment and structure
>pdb|1S1H|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 185 Back     alignment and structure
>pdb|2XZM|B Chain B, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 241 Back     alignment and structure
>pdb|3J20|B Chain B, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 202 Back     alignment and structure
>pdb|1VI6|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208 Back     alignment and structure
>pdb|1VI5|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208 Back     alignment and structure
>pdb|1X18|E Chain E, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 231 Back     alignment and structure
>pdb|3FIC|B Chain B, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 235 Back     alignment and structure
>pdb|2E5L|B Chain B, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via The Shine- Dalgarno Interaction Length = 227 Back     alignment and structure
>pdb|1PNS|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 234 Back     alignment and structure
>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 255 Back     alignment and structure
>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 256 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
1vi6_A208 30S ribosomal protein S2P; structural genomics, ri 1e-103
3u5c_A252 40S ribosomal protein S0-A; translation, ribosome, 1e-100
2zkq_b295 40S ribosomal protein SA; protein-RNA complex, 40S 1e-100
2xzm_B241 RPS0E; ribosome, translation; 3.93A {Tetrahymena t 1e-97
3iz6_A305 40S ribosomal protein SA (S2P); eukaryotic ribosom 3e-96
3bch_A253 40S ribosomal protein SA; laminin receptor, P40 ri 9e-95
3bbn_B231 Ribosomal protein S2; small ribosomal subunit, spi 2e-05
2vqe_B256 30S ribosomal protein S2; tRNA-binding, rRNA-bindi 2e-05
3r8n_B218 30S ribosomal protein S2; protein biosynthesis, RN 5e-05
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Length = 208 Back     alignment and structure
 Score =  296 bits (761), Expect = e-103
 Identities = 61/192 (31%), Positives = 109/192 (56%), Gaps = 5/192 (2%)

Query: 1   MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLL 60
           +    + L          L A  HIG++     M+++++K R DG+++L++R+  E++ +
Sbjct: 3   LEKEYEYL----VPPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRV 58

Query: 61  AARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPR 120
           AA+ +   E P+ + ++++R    + V  F+   G+  I GRF PG  TN + + +REP 
Sbjct: 59  AAKFLSRYE-PSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPE 117

Query: 121 LLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180
           ++ V DP  D Q ++EA  V IPV+A C++ +    VD+ IP NNK   ++ +++WLLAR
Sbjct: 118 VVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAR 177

Query: 181 EVLRFRGVIGPD 192
           E+ + RG     
Sbjct: 178 EIAKIRGQDFTY 189
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252 Back     alignment and structure
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 295 Back     alignment and structure
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Length = 241 Back     alignment and structure
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 Back     alignment and structure
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Length = 253 Back     alignment and structure
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 231 Back     alignment and structure
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Length = 256 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
3bch_A253 40S ribosomal protein SA; laminin receptor, P40 ri 100.0
3u5c_A252 40S ribosomal protein S0-A; translation, ribosome, 100.0
2zkq_b295 40S ribosomal protein SA; protein-RNA complex, 40S 100.0
3iz6_A305 40S ribosomal protein SA (S2P); eukaryotic ribosom 100.0
2xzm_B241 RPS0E; ribosome, translation; 3.93A {Tetrahymena t 100.0
3j20_B202 30S ribosomal protein S2P; archaea, archaeal, KINK 100.0
1vi6_A208 30S ribosomal protein S2P; structural genomics, ri 100.0
3bbn_B231 Ribosomal protein S2; small ribosomal subunit, spi 100.0
2vqe_B256 30S ribosomal protein S2; tRNA-binding, rRNA-bindi 100.0
3r8n_B218 30S ribosomal protein S2; protein biosynthesis, RN 100.0
2yva_A196 DNAA initiator-associating protein DIAA; intermole 95.96
3trj_A201 Phosphoheptose isomerase; lipopolysaccharide biosy 95.23
2i2w_A212 Phosphoheptose isomerase; lipopolysaccharide biosy 94.98
3sho_A187 Transcriptional regulator, RPIR family; structural 94.77
1x92_A199 APC5045, phosphoheptose isomerase; midwest centre 94.51
1nri_A306 Hypothetical protein HI0754; structural genomics, 94.32
3etn_A220 Putative phosphosugar isomerase involved in capsu 94.29
2xbl_A198 Phosphoheptose isomerase; capsule; HET: M7P PGE PG 94.16
3fxa_A201 SIS domain protein; structural genomics, joint cen 94.1
1m3s_A186 Hypothetical protein YCKF; structural genomics, PS 93.88
1tk9_A188 Phosphoheptose isomerase 1; lipopolysaccharide bio 93.58
2xhz_A183 KDSD, YRBH, arabinose 5-phosphate isomerase; lipop 93.19
1jeo_A180 MJ1247, hypothetical protein MJ1247; RUMP pathway, 93.09
1vim_A200 Hypothetical protein AF1796; structural genomics, 92.92
2a3n_A 355 Putative glucosamine-fructose-6-phosphate aminotr; 89.83
2aml_A 373 SIS domain protein; 46906266, LMO0035 protein, str 89.27
3knz_A 366 Putative sugar binding protein; structural genomic 87.63
3g68_A 352 Putative phosphosugar isomerase; SIS domain, doubl 82.49
3cvj_A243 Putative phosphoheptose isomerase; rossman fold, 3 81.74
3jx9_A170 Putative phosphoheptose isomerase; YP_001815198.1, 80.19
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.5e-71  Score=480.29  Aligned_cols=201  Identities=72%  Similarity=1.149  Sum_probs=189.4

Q ss_pred             CCCCcccccCCHHHHHHHHHcCceecCCcCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q psy16262          1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSR   80 (222)
Q Consensus         1 ~~~~~~~~~~~~~~~~~ll~a~~HlG~~~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~i~~~~~ILfv~t~   80 (222)
                      +|+++|+++|+++++++||+||+||||++|||+|++||||+|+||+|||||++|+++|++|++++..++++++||||+||
T Consensus        34 ~~~~~~~l~~k~~~v~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~~~~~~~iLfVgTk  113 (253)
T 3bch_A           34 SSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSR  113 (253)
T ss_dssp             --------CCCHHHHHHHHHHTTTBCCSCCCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHTCSSGGGEEEEECS
T ss_pred             cccCCccccCcHHHHHHHHHcCEEecCCcCCccccccEEeecCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999977889999999999


Q ss_pred             hhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEE
Q psy16262         81 PIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIA  160 (222)
Q Consensus        81 ~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~Idyp  160 (222)
                      ++++++|+++|+++|++||++||+||+||||++..+++||+|||+||..|++||+||+++||||||||||||||+.||||
T Consensus       114 ~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~  193 (253)
T 3bch_A          114 NTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIA  193 (253)
T ss_dssp             HHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEE
T ss_pred             HHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCccchHHHHHHHhCCCEEEEEcCCCCcccCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchhHHHHHHHHHHHHHhhhCCCCCCCCccccccc
Q psy16262        161 IPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYI  201 (222)
Q Consensus       161 IP~Ndds~~si~li~~lL~~ai~~~~g~~~~~~~~~~~~~~  201 (222)
                      |||||||.+||.|++|+|++||+++||+++++.||++++-+
T Consensus       194 IP~Ndds~~SI~Li~~lla~aIl~grg~i~~~~~w~v~~dl  234 (253)
T 3bch_A          194 IPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDL  234 (253)
T ss_dssp             EESCCSSHHHHHHHHHHHHHHHHHHHTSSCSSSCCSSCGGG
T ss_pred             eecCCcchhhHHHHHHHHHHHHHHhcCccCCCCCCccCcee
Confidence            99999999999999999999999999999999999998764
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Back     alignment and structure
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Back     alignment and structure
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Back     alignment and structure
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Back     alignment and structure
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli} Back     alignment and structure
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp} Back     alignment and structure
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A Back     alignment and structure
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus} Back     alignment and structure
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A Back     alignment and structure
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3 Back     alignment and structure
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A Back     alignment and structure
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str} Back     alignment and structure
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A Back     alignment and structure
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3 Back     alignment and structure
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli} Back     alignment and structure
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3 Back     alignment and structure
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3 Back     alignment and structure
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium} Back     alignment and structure
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp} Back     alignment and structure
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile} Back     alignment and structure
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} Back     alignment and structure
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 222
d1vi6a_193 c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Arch 3e-59
d2uubb1234 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus 1e-40
d2gy9b1218 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escheric 1e-35
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  182 bits (464), Expect = 3e-59
 Identities = 59/173 (34%), Positives = 106/173 (61%), Gaps = 1/173 (0%)

Query: 15  VTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADV 74
               L A  HIG++     M+++++K R DG+++L++R+  E++ +AA+  ++   P+ +
Sbjct: 8   PDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAK-FLSRYEPSKI 66

Query: 75  FVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPI 134
            ++++R    + V  F+   G+  I GRF PG  TN + + +REP ++ V DP  D Q +
Sbjct: 67  LLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAV 126

Query: 135 TEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRG 187
           +EA  V IPV+A C++ +    VD+ IP NNK   ++ +++WLLARE+ + RG
Sbjct: 127 SEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRG 179
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
d1vi6a_193 Ribosomal protein S2 {Archaeon Archaeoglobus fulgi 100.0
d2uubb1234 Ribosomal protein S2 {Thermus thermophilus [TaxId: 100.0
d2gy9b1218 Ribosomal protein S2 {Escherichia coli [TaxId: 562 100.0
d1tk9a_188 Phosphoheptose isomerase GmhA1 {Campylobacter jeju 96.14
d1x94a_191 Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T 96.12
d1x92a_194 Phosphoheptose isomerase GmhA1 {Pseudomonas aerugi 95.44
d1m3sa_186 Hypothetical protein YckF {Bacillus subtilis [TaxI 93.65
d1nria_248 Hypothetical protein HI0754 {Haemophilus influenza 92.58
d1jeoa_177 Probable 3-hexulose-6-phosphate isomerase MJ1247 { 90.16
d1p3da196 UDP-N-acetylmuramate-alanine ligase MurC {Haemophi 88.49
d1ir6a_ 385 Exonuclease RecJ {Thermus thermophilus [TaxId: 274 88.14
d1vima_192 Hypothetical protein AF1796 {Archaeon Archaeoglobu 87.4
d1j6ua189 UDP-N-acetylmuramate-alanine ligase MurC {Thermoto 86.54
d2jfga193 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 84.5
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=3.2e-62  Score=410.64  Aligned_cols=179  Identities=33%  Similarity=0.643  Sum_probs=172.0

Q ss_pred             HHHHHHHHcCceecCCcCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEecChhhHHHHHHHHH
Q psy16262         13 DDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFAS   92 (222)
Q Consensus        13 ~~~~~ll~a~~HlG~~~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~i~~~~~ILfv~t~~~~~~~v~~~a~   92 (222)
                      +++++||+||+|+||+.++++|++||||.|+||+|||||++|+++|++|++++..+ ++++||||+|+++++++|+++|+
T Consensus         6 v~i~~ll~agvH~G~~~~~~~M~~YIy~~r~ngi~IIdL~kT~~~L~~A~~~l~~~-~~~~ILfVgtk~~~~~~v~~~A~   84 (193)
T d1vi6a_           6 VPPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSK   84 (193)
T ss_dssp             SCHHHHHHHTTTBCCSCCCTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHH
T ss_pred             eeHHHHHHhCeeeCCCcCCCCCccccccccCCCeEEeeHHHHHHHHHHHHHHHHHh-ccCceEEeecccchHHHHHHHHH
Confidence            67899999999999998888899999999988999999999999999999988766 67899999999999999999999


Q ss_pred             HcCCccccccccCCccchHHHhhccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHH
Q psy16262         93 YTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIG  172 (222)
Q Consensus        93 ~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~  172 (222)
                      ++|++||++||+||+||||.+.++++||++||+||..|++||+||+++||||||+|||||||+.|||||||||||.+|+.
T Consensus        85 ~~g~~~v~~RWlgG~LTN~~~~~~~~P~~liv~dp~~d~~ai~Ea~~l~IPvI~ivDTn~~p~~vdy~IP~Ndds~~Si~  164 (193)
T d1vi6a_          85 VVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALA  164 (193)
T ss_dssp             HHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHH
T ss_pred             hcCCCcccccccCCcccchHHhhcccceEEEEEcCcchHHHHHHHHHcCCCeeeEeccCCCCcccceEEeCCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhCCCCCC
Q psy16262        173 LMWWLLAREVLRFRGVIGPD  192 (222)
Q Consensus       173 li~~lL~~ai~~~~g~~~~~  192 (222)
                      +++++|+++|+++||.-...
T Consensus       165 li~~~l~~ai~~~k~~~~~~  184 (193)
T d1vi6a_         165 IVYWLLAREIAKIRGQDFTY  184 (193)
T ss_dssp             HHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHcCCcccc
Confidence            99999999999999876643
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure