Psyllid ID: psy16402

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCLAGGR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHccccHHHEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCLAGGR
Flexible Loop (DISEMBL)
MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCLAGGR
Low Complexity Region (SEG)
MstttadaldsllddYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCLAGGR
Disordered region (IsUnstruct)
**********SLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCLA***
Disordered Region (DISOPRED)
**********SLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCLAGG*
Disordered Region (DISEMBL)
********LDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCLAGGR
Disordered Region (DISPRO)
*****ADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCLAGG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCLAGGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
Q2T9M1	417	PRKCA-binding protein OS=	no	N/A	0.753	0.139	0.450	1e-09
Q9EP80	416	PRKCA-binding protein OS=	yes	N/A	0.753	0.139	0.450	1e-09
Q62083	416	PRKCA-binding protein OS=	yes	N/A	0.753	0.139	0.450	1e-09
Q9NRD5	415	PRKCA-binding protein OS=	yes	N/A	0.753	0.139	0.450	1e-09
Q5REH1	415	PRKCA-binding protein OS=	yes	N/A	0.753	0.139	0.450	1e-09
Q4R7Q5	415	PRKCA-binding protein OS=	N/A	N/A	0.753	0.139	0.450	3e-09

>sp|Q2T9M1|PICK1_BOVIN PRKCA-binding protein OS=Bos taurus GN=PICK1 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           MS+ TADAL              LSRAILCND LVK++EELE T ++YKG+ EH K +L+
Sbjct: 129 MSSGTADAL-------------GLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLR 175

Query: 61  GFLGILRVYKG 71
            F  + + ++ 
Sbjct: 176 AFYELSQTHRA 186

Probable adapter protein that bind to and organize the subcellular localization of a variety of membrane proteins containing some PDZ recognition sequence. Involved in the clustering of various receptors, possibly by acting at the receptor internalization level. Plays a role in synaptic plasticity by regulating the trafficking and internalization of AMPA receptors. May be regulated upon PRKCA activation. May regulate ASIC3/ASIC1 channel.
Bos taurus (taxid: 9913)

>sp|Q9EP80|PICK1_RAT PRKCA-binding protein OS=Rattus norvegicus GN=Pick1 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           MS+ TADAL              LSRAILCND LVK++EELE T ++YKG+ EH K +L+
Sbjct: 129 MSSGTADAL-------------GLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLR 175

Query: 61  GFLGILRVYKG 71
            F  + + ++ 
Sbjct: 176 AFYELSQTHRA 186

Probable adapter protein that bind to and organize the subcellular localization of a variety of membrane proteins containing some PDZ recognition sequence. Involved in the clustering of various receptors, possibly by acting at the receptor internalization level. Plays a role in synaptic plasticity by regulating the trafficking and internalization of AMPA receptors. May be regulated upon PRKCA activation. May regulate ASIC1/ASIC3 channel.

Rattus norvegicus (taxid: 10116)

>sp|Q62083|PICK1_MOUSE PRKCA-binding protein OS=Mus musculus GN=Pick1 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           MS+ TADAL              LSRAILCND LVK++EELE T ++YKG+ EH K +L+
Sbjct: 129 MSSGTADAL-------------GLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLR 175

Query: 61  GFLGILRVYKG 71
            F  + + ++ 
Sbjct: 176 AFYELSQTHRA 186

Probable adapter protein that bind to and organize the subcellular localization of a variety of membrane proteins containing some PDZ recognition sequence. Involved in the clustering of various receptors, possibly by acting at the receptor internalization level. Plays a role in synaptic plasticity by regulating the trafficking and internalization of AMPA receptors. May be regulated upon PRKCA activation. May regulate ASIC1/ASIC3 channel.

Mus musculus (taxid: 10090)

>sp|Q9NRD5|PICK1_HUMAN PRKCA-binding protein OS=Homo sapiens GN=PICK1 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           MS+ TADAL              LSRAILCND LVK++EELE T ++YKG+ EH K +L+
Sbjct: 129 MSSGTADAL-------------GLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLR 175

Query: 61  GFLGILRVYKG 71
            F  + + ++ 
Sbjct: 176 AFYELSQTHRA 186

Probable adapter protein that bind to and organize the subcellular localization of a variety of membrane proteins containing some PDZ recognition sequence. Involved in the clustering of various receptors, possibly by acting at the receptor internalization level. Plays a role in synaptic plasticity by regulating the trafficking and internalization of AMPA receptors. May be regulated upon PRKCA activation. May regulate heteromeric ASIC1/ASIC3 channel.

Homo sapiens (taxid: 9606)

>sp|Q5REH1|PICK1_PONAB PRKCA-binding protein OS=Pongo abelii GN=PICK1 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           MS+ TADAL              LSRAILCND LVK++EELE T ++YKG+ EH K +L+
Sbjct: 129 MSSGTADAL-------------GLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLR 175

Query: 61  GFLGILRVYKG 71
            F  + + ++ 
Sbjct: 176 AFYELSQTHRA 186

Probable adapter protein that bind to and organize the subcellular localization of a variety of membrane proteins containing some PDZ recognition sequence. Involved in the clustering of various receptors, possibly by acting at the receptor internalization level. Plays a role in synaptic plasticity by regulating the trafficking and internalization of AMPA receptors. May be regulated upon PRKCA activation. May regulate ASIC1/ASIC3 channel.

Pongo abelii (taxid: 9601)

>sp|Q4R7Q5|PICK1_MACFA PRKCA-binding protein OS=Macaca fascicularis GN=PICK1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           MS+ TADAL              LSRAILCND LVK++EELE T ++YKG+ EH K +L+
Sbjct: 129 MSSGTADAL-------------GLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLR 175

Query: 61  GFLGILRVYKG 71
            F  + + ++ 
Sbjct: 176 VFYELSQTHRA 186

Probable adapter protein that bind to and organize the subcellular localization of a variety of membrane proteins containing some PDZ recognition sequence. Involved in the clustering of various receptors, possibly by acting at the receptor internalization level. Plays a role in synaptic plasticity by regulating the trafficking and internalization of AMPA receptors. May be regulated upon PRKCA activation. May regulate ASIC1/ASIC3 channel.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
242008834	396	PRKCA-binding protein, putative [Pedicul	0.753	0.146	0.591	5e-14
225709950	457	PRKCA-binding protein [Caligus rogercres	0.740	0.124	0.571	8e-12
198472285	576	GA19403 [Drosophila pseudoobscura pseudo	0.753	0.100	0.521	3e-11
195174601	577	GL19723 [Drosophila persimilis] gi|19411	0.753	0.100	0.521	3e-11
170038446	475	PRKCA-binding protein [Culex quinquefasc	0.740	0.12	0.514	3e-11
194861092	576	GG23794 [Drosophila erecta] gi|190661580	0.753	0.100	0.507	7e-11
195114760	563	GI14495 [Drosophila mojavensis] gi|19391	0.753	0.103	0.507	7e-11
24583951	487	PICK1, isoform B [Drosophila melanogaste	0.753	0.119	0.507	7e-11
195035731	476	GH10118 [Drosophila grimshawi] gi|193905	0.753	0.121	0.507	7e-11
195472423	576	GE18598 [Drosophila yakuba] gi|194174601	0.753	0.100	0.507	8e-11

>gi|242008834|ref|XP_002425202.1| PRKCA-binding protein, putative [Pediculus humanus corporis] gi|212508923|gb|EEB12464.1| PRKCA-binding protein, putative [Pediculus humanus corporis]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           MS+ TADAL              LSRAILCNDTLVKK+EELE+TE MY+GLVEH K+V+K
Sbjct: 114 MSSATADAL-------------GLSRAILCNDTLVKKLEELESTEMMYQGLVEHTKRVMK 160

Query: 61  GFLGILRVYKG 71
            F  +L+VYK 
Sbjct: 161 AFFQLLQVYKA 171

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225709950|gb|ACO10821.1| PRKCA-binding protein [Caligus rogercresseyi]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 13/70 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           MS++TADAL              LSRAILCNDTLVKK+E+LE TE MYKGLV+H K+VL+
Sbjct: 154 MSSSTADAL-------------GLSRAILCNDTLVKKLEQLERTELMYKGLVDHTKRVLR 200

Query: 61  GFLGILRVYK 70
           G+  +L V K
Sbjct: 201 GYFDLLMVSK 210

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198472285|ref|XP_001355887.2| GA19403 [Drosophila pseudoobscura pseudoobscura] gi|198138946|gb|EAL32946.2| GA19403 [Drosophila pseudoobscura pseudoobscura]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           MS+ TAD L              LSRAILCND+LVK++EELE TE MYKGLVEH +++LK
Sbjct: 202 MSSNTADTL-------------GLSRAILCNDSLVKRLEELEGTELMYKGLVEHARRMLK 248

Query: 61  GFLGILRVYKG 71
            +  +L+ YK 
Sbjct: 249 AYYDLLQTYKS 259

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195174601|ref|XP_002028061.1| GL19723 [Drosophila persimilis] gi|194115792|gb|EDW37835.1| GL19723 [Drosophila persimilis]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           MS+ TAD L              LSRAILCND+LVK++EELE TE MYKGLVEH +++LK
Sbjct: 203 MSSNTADTL-------------GLSRAILCNDSLVKRLEELEGTELMYKGLVEHARRMLK 249

Query: 61  GFLGILRVYKG 71
            +  +L+ YK 
Sbjct: 250 AYYDLLQTYKS 260

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170038446|ref|XP_001847061.1| PRKCA-binding protein [Culex quinquefasciatus] gi|167882104|gb|EDS45487.1| PRKCA-binding protein [Culex quinquefasciatus]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 13/70 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           MS++TAD L              LSRAILCND+LVK+++ELE TE MYKGLVEH K++LK
Sbjct: 131 MSSSTADTL-------------GLSRAILCNDSLVKRLQELERTESMYKGLVEHAKRMLK 177

Query: 61  GFLGILRVYK 70
               +L+ Y+
Sbjct: 178 AHFDVLQTYQ 187

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194861092|ref|XP_001969713.1| GG23794 [Drosophila erecta] gi|190661580|gb|EDV58772.1| GG23794 [Drosophila erecta]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           +S+ TAD L              LSRAILCND+LVK++EELE TE MYKGLVEH +++LK
Sbjct: 204 LSSNTADTL-------------GLSRAILCNDSLVKRLEELEGTELMYKGLVEHARRMLK 250

Query: 61  GFLGILRVYKG 71
            +  +L+ YK 
Sbjct: 251 AYYDLLQTYKS 261

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114760|ref|XP_002001935.1| GI14495 [Drosophila mojavensis] gi|193912510|gb|EDW11377.1| GI14495 [Drosophila mojavensis]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           +S+ TAD L              LSRAILCND+LVK++EELE TE MYKGLVEH +++LK
Sbjct: 197 LSSNTADTL-------------GLSRAILCNDSLVKRLEELEGTELMYKGLVEHARRMLK 243

Query: 61  GFLGILRVYKG 71
            +  +L+ YK 
Sbjct: 244 AYYDLLQTYKS 254

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24583951|ref|NP_723766.1| PICK1, isoform B [Drosophila melanogaster] gi|22946349|gb|AAN10821.1| PICK1, isoform B [Drosophila melanogaster]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           +S+ TAD L              LSRAILCND+LVK++EELE TE MYKGLVEH +++LK
Sbjct: 114 LSSNTADTL-------------GLSRAILCNDSLVKRLEELEGTELMYKGLVEHARRMLK 160

Query: 61  GFLGILRVYKG 71
            +  +L+ YK 
Sbjct: 161 AYYDLLQTYKS 171

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035731|ref|XP_001989325.1| GH10118 [Drosophila grimshawi] gi|193905325|gb|EDW04192.1| GH10118 [Drosophila grimshawi]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           +S+ TAD L              LSRAILCND+LVK++EELE TE MYKGLVEH +++LK
Sbjct: 114 LSSNTADTL-------------GLSRAILCNDSLVKRLEELEGTELMYKGLVEHARRMLK 160

Query: 61  GFLGILRVYKG 71
            +  +L+ YK 
Sbjct: 161 AYYDLLQTYKS 171

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195472423|ref|XP_002088500.1| GE18598 [Drosophila yakuba] gi|194174601|gb|EDW88212.1| GE18598 [Drosophila yakuba]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 13/71 (18%)

Query: 1   MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60
           +S+ TAD L              LSRAILCND+LVK++EELE TE MYKGLVEH +++LK
Sbjct: 204 LSSNTADTL-------------GLSRAILCNDSLVKRLEELEGTELMYKGLVEHARRMLK 250

Query: 61  GFLGILRVYKG 71
            +  +L+ YK 
Sbjct: 251 AYYDLLQTYKS 261

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
FB|FBgn0032447	504	PICK1 "PICK1" [Drosophila mela	0.610	0.093	0.659	7.5e-12
UNIPROTKB|F6V107	229	PICK1 "PRKCA-binding protein"	0.610	0.205	0.531	1.3e-09
ZFIN|ZDB-GENE-061013-283	406	zgc:153257 "zgc:153257" [Danio	0.610	0.115	0.553	2e-09
UNIPROTKB|E1BQ62	408	PICK1 "Uncharacterized protein	0.610	0.115	0.553	3.3e-09
UNIPROTKB|F1MU52	355	PICK1 "PRKCA-binding protein"	0.610	0.132	0.531	5.3e-09
UNIPROTKB|Q9NRD5	415	PICK1 "PRKCA-binding protein"	0.610	0.113	0.531	7.3e-09
MGI|MGI:894645	416	Pick1 "protein interacting wit	0.610	0.112	0.531	7.3e-09
RGD|69437	416	Pick1 "protein interacting wit	0.610	0.112	0.531	7.3e-09
UNIPROTKB|Q9EP80	416	Pick1 "PRKCA-binding protein"	0.610	0.112	0.531	7.3e-09
UNIPROTKB|F1N6J2	417	PICK1 "PRKCA-binding protein"	0.610	0.112	0.531	7.3e-09

FB|FBgn0032447 PICK1 "PICK1" [Drosophila melanogaster (taxid:7227)]

 Score = 169 (64.5 bits), Expect = 7.5e-12, P = 7.5e-12
 Identities = 31/47 (65%), Positives = 40/47 (85%)

Query:    24 LSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
             LSRAILCND+LVK++EELE TE MYKGLVEH +++LK +  +L+ YK
Sbjct:   141 LSRAILCNDSLVKRLEELEGTELMYKGLVEHARRMLKAYYDLLQTYK 187

GO:0003674 "molecular_function" evidence=ND

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0045055 "regulated secretory pathway" evidence=IEP

GO:0043025 "neuronal cell body" evidence=IDA

UNIPROTKB|F6V107 PICK1 "PRKCA-binding protein" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query:    24 LSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
             LSRAILCND LVK++EELE T ++YKG+ EH K +L+ F  + + ++
Sbjct:   139 LSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHR 185

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

ZFIN|ZDB-GENE-061013-283 zgc:153257 "zgc:153257" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 26/47 (55%), Positives = 38/47 (80%)

Query:    24 LSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
             LSRAILCND LVK++EELE T ++YKGL+EH K++L+ F  + + ++
Sbjct:   139 LSRAILCNDGLVKRLEELEKTAELYKGLMEHTKRLLRAFYELSQTHR 185

GO:0019904 "protein domain specific binding" evidence=IEA

UNIPROTKB|E1BQ62 PICK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query:    24 LSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
             LSRAILCND LVK++EELE T ++YKGL EH K +L+ F  + + ++
Sbjct:   139 LSRAILCNDGLVKRLEELERTAELYKGLTEHTKSLLRAFFELSQTHR 185

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=ISS

GO:0015844 "monoamine transport" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0019899 "enzyme binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0042734 "presynaptic membrane" evidence=ISS

GO:0019904 "protein domain specific binding" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0043234 "protein complex" evidence=ISS

GO:0045202 "synapse" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006605 "protein targeting" evidence=ISS

UNIPROTKB|F1MU52 PICK1 "PRKCA-binding protein" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query:    24 LSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
             LSRAILCND LVK++EELE T ++YKG+ EH K +L+ F  + + ++
Sbjct:   139 LSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHR 185

GO:0019904 "protein domain specific binding" evidence=IEA

UNIPROTKB|Q9NRD5 PICK1 "PRKCA-binding protein" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query:    24 LSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
             LSRAILCND LVK++EELE T ++YKG+ EH K +L+ F  + + ++
Sbjct:   139 LSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHR 185

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0005102 "receptor binding" evidence=ISS

GO:0043113 "receptor clustering" evidence=ISS

GO:0045202 "synapse" evidence=ISS

GO:0043045 "DNA methylation involved in embryo development" evidence=NAS

GO:0043046 "DNA methylation involved in gamete generation" evidence=TAS

GO:0019899 "enzyme binding" evidence=IPI

GO:0016887 "ATPase activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0045161 "neuronal ion channel clustering" evidence=TAS

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0015844 "monoamine transport" evidence=IDA

GO:0007268 "synaptic transmission" evidence=TAS

GO:0030666 "endocytic vesicle membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006200 "ATP catabolic process" evidence=ISS

MGI|MGI:894645 Pick1 "protein interacting with C kinase 1" [Mus musculus (taxid:10090)]

 Score = 140 (54.3 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query:    24 LSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
             LSRAILCND LVK++EELE T ++YKG+ EH K +L+ F  + + ++
Sbjct:   139 LSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHR 185

GO:0005080 "protein kinase C binding" evidence=ISO;IPI

GO:0005102 "receptor binding" evidence=ISO;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006605 "protein targeting" evidence=IDA

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=NAS

GO:0007275 "multicellular organismal development" evidence=NAS

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0014069 "postsynaptic density" evidence=ISO

GO:0015844 "monoamine transport" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016887 "ATPase activity" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=ISO

GO:0042734 "presynaptic membrane" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043113 "receptor clustering" evidence=ISO;IDA

GO:0043234 "protein complex" evidence=ISO

GO:0045202 "synapse" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;IDA

GO:0050803 "regulation of synapse structure and activity" evidence=NAS

GO:0051260 "protein homooligomerization" evidence=TAS

RGD|69437 Pick1 "protein interacting with PRKCA 1" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query:    24 LSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
             LSRAILCND LVK++EELE T ++YKG+ EH K +L+ F  + + ++
Sbjct:   139 LSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHR 185

GO:0001664 "G-protein coupled receptor binding" evidence=TAS

GO:0005080 "protein kinase C binding" evidence=ISO;ISS;IDA

GO:0005102 "receptor binding" evidence=ISO;ISS;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO;ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0006605 "protein targeting" evidence=IEA;ISO

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IEA;ISO;ISS

GO:0008022 "protein C-terminus binding" evidence=ISO;ISS;IPI

GO:0014069 "postsynaptic density" evidence=IDA

GO:0015844 "monoamine transport" evidence=IEA;ISO;ISS

GO:0015872 "dopamine transport" evidence=NAS

GO:0016301 "kinase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO;ISS

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IEA;IMP

GO:0030425 "dendrite" evidence=IDA

GO:0030971 "receptor tyrosine kinase binding" evidence=TAS

GO:0035256 "G-protein coupled glutamate receptor binding" evidence=TAS

GO:0042734 "presynaptic membrane" evidence=IEA;ISO;ISS

GO:0042802 "identical protein binding" evidence=IDA

GO:0043113 "receptor clustering" evidence=ISO;ISS;IMP

GO:0043234 "protein complex" evidence=IDA

GO:0045202 "synapse" evidence=ISO;ISS;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=TAS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS;IDA

GO:0051020 "GTPase binding" evidence=TAS

UNIPROTKB|Q9EP80 Pick1 "PRKCA-binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query:    24 LSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
             LSRAILCND LVK++EELE T ++YKG+ EH K +L+ F  + + ++
Sbjct:   139 LSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHR 185

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1N6J2 PICK1 "PRKCA-binding protein" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query:    24 LSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
             LSRAILCND LVK++EELE T ++YKG+ EH K +L+ F  + + ++
Sbjct:   139 LSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHR 185

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0015844 "monoamine transport" evidence=IEA

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	77
cd07659	215	cd07659, BAR_PICK1, The Bin/Amphiphysin/Rvs (BAR)	7e-12
pfam06456	229	pfam06456, Arfaptin, Arfaptin-like domain	3e-06
smart01015	217	smart01015, Arfaptin, Arfaptin-like domain	1e-04

>gnl|CDD|153343 cd07659, BAR_PICK1, The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1

 Score = 57.7 bits (140), Expect = 7e-12
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 31 NDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
          ND LVKK+EELE T ++YKGLVEH K++L+ F  + + +K
Sbjct: 1  NDGLVKKLEELEQTAELYKGLVEHTKRLLRAFYALSQTHK 40

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of PICK1 is necessary for its membrane localization and activation. Length = 215

>gnl|CDD|203455 pfam06456, Arfaptin, Arfaptin-like domain

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 23 SLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
            S AI  +D L  K+E L + ++ Y GLV+  +   K    + +  K
Sbjct: 24 EDSHAITSDDELDAKLEVLRSIQRTYLGLVKLARNYSKRLYDLSQTQK 71

Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms an elongated, crescent-shaped dimer of three-helix coiled-coils. The N-terminal region of ICA69 is similar to arfaptin. Length = 229

>gnl|CDD|214974 smart01015, Arfaptin, Arfaptin-like domain

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 8/44 (18%), Positives = 21/44 (47%)

Query: 27 AILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
           +  +  L  K+E L +T++ Y+ L++  +K  +    + +   
Sbjct: 22 VVASDAELDAKLELLRSTQRTYEDLLKLIEKYQQRLCNLSQTEN 65

Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms an elongated, crescent-shaped dimer of three-helix coiled-coils. The N-terminal region of ICA69 is similar to arfaptin. Length = 217

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
KOG3651|consensus	429		99.92
PF06456	229	Arfaptin: Arfaptin-like domain; InterPro: IPR01050	99.2
cd07659	215	BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.06
cd00011	203	BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do	98.15
cd07660	201	BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain	97.71
PF05263	130	DUF722: Protein of unknown function (DUF722); Inte	87.07
cd07634	207	BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai	83.97
cd07635	207	BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of	83.34
PF04048	142	Sec8_exocyst: Sec8 exocyst complex component speci	83.1

>KOG3651|consensus

Probab=99.92  E-value=1.2e-25  Score=179.96  Aligned_cols=59  Identities=54%  Similarity=0.790  Sum_probs=58.5

Q ss_pred             CcchhHHHHhhhHHHHhhhhhcchhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402          1 MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGC   72 (77)
Q Consensus         1 Mss~TADAL~~~~~~~~~~~~~GLSRAILCND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f   72 (77)
                      |||+|||||             ||||||||||+||||+||||.|+.||||||+|+++||++||+++|+||+|
T Consensus       114 ~ss~tADaL-------------GLSRAILcND~LvkrleeLE~tae~Ykglveh~~~ml~a~y~lsqt~k~F  172 (429)
T KOG3651|consen  114 VSSDTADAL-------------GLSRAILCNDPLVKRLEELEETAEFYKGLVEHFGDMLQAQYKLSQTQKEF  172 (429)
T ss_pred             cccCchhhh-------------cchhhhhcCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            799999999             99999999999999999999999999999999999999999999999998

>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules

Probab=99.20  E-value=3.6e-11  Score=88.05  Aligned_cols=59  Identities=27%  Similarity=0.384  Sum_probs=43.4

Q ss_pred             CcchhHHHHhhhHHHHhhhhhcchhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402          1 MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGC   72 (77)
Q Consensus         1 Mss~TADAL~~~~~~~~~~~~~GLSRAILCND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f   72 (77)
                      |.++++|++             |.||||+||+.|.+|+|.++.+...|++|++|++++++.|+.+++++++|
T Consensus        15 ~~~e~~g~~-------------~~~~~it~D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~l   73 (229)
T PF06456_consen   15 MVSEKLGKK-------------EDSRAITVDDELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKEL   73 (229)
T ss_dssp             ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcc-------------cccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999             99999999999999999999999999999999999999999999999987

The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.

>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1

Probab=99.06  E-value=4.2e-10  Score=84.72  Aligned_cols=42  Identities=52%  Similarity=0.830  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402         31 NDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGC   72 (77)
Q Consensus        31 ND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f   72 (77)
                      ||+|++|||+|++|+++|+++++|+++++++|+++++++|+|
T Consensus         1 nd~l~~qie~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~   42 (215)
T cd07659           1 NDGLVKKLEELEQTAELYKGLVEHTKRLLRAFYALSQTHKEF   42 (215)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999997

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th

>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes

Probab=98.15  E-value=7.6e-06  Score=60.44  Aligned_cols=42  Identities=12%  Similarity=0.213  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402         31 NDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGC   72 (77)
Q Consensus        31 ND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f   72 (77)
                      ||.|.+|||.|+.+...|++|+.|++++++.|+.+++++++|
T Consensus         1 D~eL~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~l   42 (203)
T cd00011           1 DLELELQLELLRETKRKYESVLQLGRALTAHLYSLSQTQHAL   42 (203)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999987

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is

>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

Probab=97.71  E-value=0.00012  Score=54.23  Aligned_cols=40  Identities=20%  Similarity=0.390  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402         33 TLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGC   72 (77)
Q Consensus        33 ~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f   72 (77)
                      .|=+|+|.|+.+.+.|+++++|++++++.|+.+++++++|
T Consensus         3 eLeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~L   42 (201)
T cd07660           3 ELEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKAL   42 (201)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4668999999999999999999999999999999999987

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im

>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38

Probab=87.07  E-value=2.2  Score=29.78  Aligned_cols=61  Identities=28%  Similarity=0.379  Sum_probs=46.0

Q ss_pred             HHHHhhhHHHHhhhh-------------------hcchhHHh---------------hcchHHHHHHHHH-HHHHHHHHH
Q psy16402          6 ADALDSLLDDYLQGL-------------------NQSLSRAI---------------LCNDTLVKKMEEL-ENTEQMYKG   50 (77)
Q Consensus         6 ADAL~~~~~~~~~~~-------------------~~GLSRAI---------------LCND~LvkkleeL-e~t~~~Ykg   50 (77)
                      ||-||++|-||..|-                   |.|-.||-               +=+|.-+.+|... +--+.+|..
T Consensus         2 ADklD~iL~DY~sG~l~~~I~~R~~el~~~~~~DNiGGgra~n~~s~p~e~~li~e~~e~D~~L~~L~~~k~~id~~~~~   81 (130)
T PF05263_consen    2 ADKLDRILSDYYSGRLDAKIKLRKLELQYRENDDNIGGGRAQNKSSRPEENVLIKERLESDEELQSLKRQKEAIDRWLET   81 (130)
T ss_pred             chHHHHHHHHHhcchHHHHHHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            899999999998642                   67777762               2566666666543 456788999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy16402         51 LVEHCKKVLKGFLGIL   66 (77)
Q Consensus        51 Lv~h~k~~Lk~~~~l~   66 (77)
                      +.+-.+++++..|..-
T Consensus        82 l~de~k~Ii~lry~~r   97 (130)
T PF05263_consen   82 LIDEEKRIIKLRYDRR   97 (130)
T ss_pred             hCHHHHHHHHHHHccc
Confidence            9999999999887654

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.

>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like

Probab=83.97  E-value=3.1  Score=31.09  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy16402         37 KMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCLAG   75 (77)
Q Consensus        37 kleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f~~~   75 (77)
                      --.|||+|.+.-+.+|.+|+.++.+.-..+...+.|..|
T Consensus         7 ~e~~l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~s   45 (207)
T cd07634           7 HEIELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQS   45 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346999999999999999999999999999998888643

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain

>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2

Probab=83.34  E-value=3.4  Score=30.79  Aligned_cols=38  Identities=18%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy16402         38 MEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCLAG   75 (77)
Q Consensus        38 leeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f~~~   75 (77)
                      -.+||+|.+.-+.||.+|+.++.+.-..+...+.|..|
T Consensus         8 e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~   45 (207)
T cd07635           8 EAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHS   45 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999888888643

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote

>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane

Probab=83.10  E-value=11  Score=25.45  Aligned_cols=70  Identities=23%  Similarity=0.317  Sum_probs=43.2

Q ss_pred             hhHHHHhhhHHHHhhhhhcch---hHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16402          4 TTADALDSLLDDYLQGLNQSL---SRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCL   73 (77)
Q Consensus         4 ~TADAL~~~~~~~~~~~~~GL---SRAILCND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f~   73 (77)
                      .+..+|+.++++|-|++|..+   |...-.-..--+++.++.+.-..-|.++.--+.-|+....-...|+..+
T Consensus        51 ~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi  123 (142)
T PF04048_consen   51 RIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMI  123 (142)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            457789999999999998754   2333333444555555655555555555444555666666666666543

The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	77
1i4d_A	224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	6e-05

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* Length = 224

 Score = 38.2 bits (88), Expect = 6e-05
 Identities = 6/41 (14%), Positives = 19/41 (46%)

Query: 30 CNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70
           +  L  ++E L  T++ Y+ +++  + +      +L+   
Sbjct: 5  VDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQH 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	77
1i4d_A	224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	98.06
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	82.38

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*

Probab=98.06  E-value=1e-05  Score=59.16  Aligned_cols=42  Identities=14%  Similarity=0.259  Sum_probs=40.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402         31 NDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGC   72 (77)
Q Consensus        31 ND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f   72 (77)
                      .-.|++|||+|+++...|++|++|++++++.|+.+++++++|
T Consensus         6 D~EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~l   47 (224)
T 1i4d_A            6 DLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHAL   47 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999987

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=82.38  E-value=3.1  Score=24.70  Aligned_cols=42  Identities=24%  Similarity=0.202  Sum_probs=34.0

Q ss_pred             hcchhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402         21 NQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGF   62 (77)
Q Consensus        21 ~~GLSRAILCND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~   62 (77)
                      .|-+||-=-.||.||.|..+||....--..=++..+++||..
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqH   44 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQN   44 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHc
Confidence            466788888999999999999987766666778888888753

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	77
d2iw1a1	370	Lipopolysaccharide core biosynthesis protein RfaG	92.79
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	91.58
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	91.04

>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Lipopolysaccharide core biosynthesis protein RfaG
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.08  Score=32.25  Aligned_cols=45  Identities=9%  Similarity=0.151  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhCC
Q psy16402         32 DTLVKKMEELENTEQMYKGLVEHCKKVLKGF--LGILRVYKGCLAGG   76 (77)
Q Consensus        32 D~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~--~~l~~~~k~f~~~~   76 (77)
                      +.|.+.+++|=+..+.++.+.+.+++..+.|  +.+.+.++.++.||
T Consensus       324 ~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~~~~~~~~~~~~ii~g~  370 (370)
T d2iw1a1         324 EQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGG  370 (370)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhCc
Confidence            5789999998888889999999999998887  88899999999998

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=0.46  Score=30.36  Aligned_cols=53  Identities=17%  Similarity=0.303  Sum_probs=39.7

Q ss_pred             CcchhHHHHhhhHHHHhhhhhcchhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16402          1 MSTTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCL   73 (77)
Q Consensus         1 Mss~TADAL~~~~~~~~~~~~~GLSRAILCND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f~   73 (77)
                      ||.+..|.+..+.|.-.+                    ..||++-..|+.|+..++++.++.-.++++.++|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~--------------------~~l~~~np~~k~li~~~k~y~~a~~~~~~a~~~f~   53 (248)
T d1y2oa1           1 MSLSRSEEMHRLTENVYK--------------------TIMEQFNPSLRNFIAMGKNYEKALAGVTYAAKGYF   53 (248)
T ss_dssp             CHHHHHHHHHHHHHHHHH--------------------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHH--------------------HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777887555443222                    13667888899999999999999999998888874

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.57  Score=27.73  Aligned_cols=41  Identities=15%  Similarity=0.244  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16402         33 TLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCL   73 (77)
Q Consensus        33 ~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f~   73 (77)
                      .+-..++.++.+++.++.++..++++...+..++..+..|.
T Consensus         7 e~e~~~~~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~   47 (200)
T d1i4da_           7 ELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALG   47 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36678889999999999999999999999999999988875