Psyllid ID: psy16425

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MAARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKKKKKKKY
Secondary Structure (PSIPRED)
ccccEEEEEEEccccccEEEEEEcccccEEEEEcEEEEccccEEEEEcccccEEEEEccccccccEEEEEEEEcccccEEEEEEEEEcccEEEEccccccEEEEccccEEEEEEEcccccccEEEEEcccEEEEcccccEEEcEEEEcEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccEEEEEEEcccEEEEEccEEEEEccEEEEEEcccccEEEEEEEEEEcccccEEEEEEcccccEEEEEEEEEEccccccccccccEEEEccccEEEEEEEEEccccEEEEEEccccEEEcccEEEEEEEcccEEEEEEEcHHHccccc
Coil and Loop (DISEMBL)
MAARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHvitknhrigvthSETKAWYLHIREVresdrgwymcqvntdpmksqvgylevvvppdildyptstdmviregsnvtlkcaasgspkpnitwrreggeliaqgngqedfpffkRTKKKKKKKkkkkkkky
Flexible Loop (DISEMBL)
MAARMLIEIGEMLMAESTVAWLRVDTQTILTIqthvitknhrigvthsetkAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSnvtlkcaasgspkpnitWRREGGELiaqgngqedfpffkrtkkkkkkkkkkkkkky
Low Complexity Region (SEG)
MAARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTkkkkkkkkkkkkkkY
Disordered region (IsUnstruct)
****MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCA**********W**************************************
Disordered Region (DISOPRED)
MAARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTS**MVIREGSNVTLKCAASGSPKPNITWRREGGE******************KKKKKKK*******
Disordered Region (DISEMBL)
MAARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKR****************
Disordered Region (DISPRO)
*AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKKKKKKKY
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKKKKKKKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q24372	359	Lachesin OS=Drosophila me	no	N/A	0.877	0.398	0.296	1e-11
Q5R412	354	Neuronal growth regulator	yes	N/A	0.582	0.268	0.41	2e-11
Q98892	337	Opioid-binding protein/ce	yes	N/A	0.705	0.341	0.412	2e-11
Q7Z3B1	354	Neuronal growth regulator	yes	N/A	0.582	0.268	0.4	4e-11
Q9Z0J8	348	Neuronal growth regulator	yes	N/A	0.582	0.272	0.41	6e-11
Q80Z24	348	Neuronal growth regulator	no	N/A	0.582	0.272	0.41	9e-11
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.711	0.332	0.307	1e-10
Q8BLK3	341	Limbic system-associated	no	N/A	0.435	0.208	0.5	1e-10
Q13449	338	Limbic system-associated	no	N/A	0.435	0.210	0.5	1e-10
Q62813	338	Limbic system-associated	no	N/A	0.435	0.210	0.5	2e-10

>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 9/152 (5%)

Query: 16  ESTVAWLRVDTQTI-LTIQTHVITKNHRIGVTHSETKAWY-LHIREVRESDRGWYMCQVN 73
           E  V +L+ D+  + L+  + ++ K+ R  + +    + Y L I++++E+D G Y CQV 
Sbjct: 57  EYNVLFLKTDSDPVFLSTGSTLVIKDSRFSLRYDPNSSTYKLQIKDIQETDAGTYTCQVV 116

Query: 74  TDPMKSQVGYLEVVV--PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGE 131
              +      +++ V  PP I D  T + +V  EGS V ++C ASG P P ITWRRE   
Sbjct: 117 ISTVHKVSAEVKLSVRRPPVISDNSTQS-VVASEGSEVQMECYASGYPTPTITWRRENNA 175

Query: 132 LIAQGNGQEDFPFFKRTKKKKKKKKKKKKKKY 163
           ++   +      +   T + K  KK+ +   Y
Sbjct: 176 ILPTDSAT----YVGNTLRIKSVKKEDRGTYY 203

Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth.
Drosophila melanogaster (taxid: 7227)

>sp|Q5R412|NEGR1_PONAB Neuronal growth regulator 1 OS=Pongo abelii GN=NEGR1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 42  RIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD--PMKSQVGYLEVVVPPDILDYPTST 99
           R+ ++    + + L I+ V  +D G Y C V T   P   QV +L V VPP I D   S+
Sbjct: 90  RVSISTLNKRDYSLQIQNVDVTDDGPYTCSVQTQHTPRTMQV-HLTVQVPPKIYD--ISS 146

Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
           DM I EG+NVTL C A+G P+P+I+WR          NGQ
Sbjct: 147 DMTINEGTNVTLTCLATGKPEPSISWRHISPSAKPFENGQ 186

May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain.

Pongo abelii (taxid: 9601)

>sp|Q98892|OBCAM_CHICK Opioid-binding protein/cell adhesion molecule homolog OS=Gallus gallus GN=OPCML PE=1 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 69/126 (54%), Gaps = 11/126 (8%)

Query: 19  VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWY-LHIREVRESDRGWYMCQVNTD-- 75
           VAWL  +  TIL       + ++R+ V  S TK  Y + I  V   D G Y C V TD  
Sbjct: 59  VAWL--NRSTILYAGNDKWSIDNRV-VILSNTKTQYSIKIHNVDVYDEGPYTCSVQTDNH 115

Query: 76  PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
           P  S+V +L V VPP I++   S+D+ + EGS+VTL C A G P+P +TWR   G+   Q
Sbjct: 116 PKTSRV-HLIVQVPPQIVN--ISSDITVNEGSSVTLMCLAFGRPEPTVTWRHLSGK--GQ 170

Query: 136 GNGQED 141
           G   ED
Sbjct: 171 GFVSED 176

Inhibits neurite outgrowth.

Gallus gallus (taxid: 9031)

>sp|Q7Z3B1|NEGR1_HUMAN Neuronal growth regulator 1 OS=Homo sapiens GN=NEGR1 PE=1 SV=3

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 5/100 (5%)

Query: 42  RIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD--PMKSQVGYLEVVVPPDILDYPTST 99
           R+ ++    + + L I+ V  +D G Y C V T   P   QV +L V VPP I D   S 
Sbjct: 90  RVSISTLNKRDYSLQIQNVDVTDDGPYTCSVQTQHTPRTMQV-HLTVQVPPKIYD--ISN 146

Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
           DM + EG+NVTL C A+G P+P+I+WR          NGQ
Sbjct: 147 DMTVNEGTNVTLTCLATGKPEPSISWRHISPSAKPFENGQ 186

May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain.

Homo sapiens (taxid: 9606)

>sp|Q9Z0J8|NEGR1_RAT Neuronal growth regulator 1 OS=Rattus norvegicus GN=Negr1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 42  RIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD--PMKSQVGYLEVVVPPDILDYPTST 99
           R+ ++    + + L I+ V  +D G Y C V T   P   QV +L V VPP I D   S 
Sbjct: 84  RVSISTLNKRDYSLQIQNVDVTDDGPYTCSVQTQHTPRTMQV-HLTVQVPPKIYD--ISN 140

Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
           DM I EG+NVTL C A+G P+P I+WR          NGQ
Sbjct: 141 DMTINEGTNVTLTCLATGKPEPAISWRHISPSAKPFENGQ 180

May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain.

Rattus norvegicus (taxid: 10116)

>sp|Q80Z24|NEGR1_MOUSE Neuronal growth regulator 1 OS=Mus musculus GN=Negr1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 42  RIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD--PMKSQVGYLEVVVPPDILDYPTST 99
           R+ ++    + + L I+ V  +D G Y C V T   P   QV +L V VPP I D   S 
Sbjct: 84  RVSISTLNKRDYSLQIQNVDVTDDGPYTCSVQTQHTPRTMQV-HLTVQVPPKIYD--ISN 140

Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
           DM I EG+NVTL C A+G P+P I+WR          NGQ
Sbjct: 141 DMTINEGTNVTLTCLATGKPEPVISWRHISPSAKPFENGQ 180

May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain.

Mus musculus (taxid: 10090)

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 69/127 (54%), Gaps = 11/127 (8%)

Query: 19  VAWLRVDTQ-----TILTIQTHVITKNHRIGVTHSETKAWY-LHIREVRESDRGWYMCQV 72
           V W++VD         ++  + +I ++ R  + +    + Y L I++++E+D G+Y CQV
Sbjct: 53  VLWMKVDRNRQVDPLPISTGSSLIIRDSRFALRYDTASSTYTLQIKDIQETDAGFYQCQV 112

Query: 73  N---TDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG 129
                + + ++V  L+V  PP I D  T + +V+ EG  V L+C A G P P ++WRRE 
Sbjct: 113 IIGLNNKITAEVD-LQVRRPPVISDNSTRS-LVVSEGQAVRLECYAGGYPAPRVSWRREN 170

Query: 130 GELIAQG 136
             ++  G
Sbjct: 171 NAILPTG 177

May play a role in early neuronal differentiation and axon outgrowth.

Schistocerca americana (taxid: 7009)

>sp|Q8BLK3|LSAMP_MOUSE Limbic system-associated membrane protein OS=Mus musculus GN=Lsamp PE=1 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 5/76 (6%)

Query: 53  WYLHIREVRESDRGWYMCQVNT--DPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVT 110
           + L I++V   D G Y C V T  +P  SQV YL V VPP I +   S+D+ + EGSNVT
Sbjct: 94  YSLRIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKISNI--SSDVTVNEGSNVT 150

Query: 111 LKCAASGSPKPNITWR 126
           L C A+G P+P ITWR
Sbjct: 151 LVCMANGRPEPVITWR 166

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Mus musculus (taxid: 10090)

>sp|Q13449|LSAMP_HUMAN Limbic system-associated membrane protein OS=Homo sapiens GN=LSAMP PE=1 SV=2

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 5/76 (6%)

Query: 53  WYLHIREVRESDRGWYMCQVNT--DPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVT 110
           + L I++V   D G Y C V T  +P  SQV YL V VPP I +   S+D+ + EGSNVT
Sbjct: 94  YSLRIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKISNI--SSDVTVNEGSNVT 150

Query: 111 LKCAASGSPKPNITWR 126
           L C A+G P+P ITWR
Sbjct: 151 LVCMANGRPEPVITWR 166

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Homo sapiens (taxid: 9606)

>sp|Q62813|LSAMP_RAT Limbic system-associated membrane protein OS=Rattus norvegicus GN=Lsamp PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 5/76 (6%)

Query: 53  WYLHIREVRESDRGWYMCQVNT--DPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVT 110
           + L I++V   D G Y C V T  +P  SQV YL V VPP I +   S+D+ + EGSNVT
Sbjct: 94  YSLRIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKISNI--SSDVTVNEGSNVT 150

Query: 111 LKCAASGSPKPNITWR 126
           L C A+G P+P ITWR
Sbjct: 151 LVCMANGRPEPVITWR 166

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
345481544	491	PREDICTED: neurotrimin-like [Nasonia vit	0.748	0.248	0.868	2e-60
189234395	350	PREDICTED: similar to AGAP010221-PA [Tri	0.828	0.385	0.770	5e-59
270001953	438	hypothetical protein TcasGA2_TC000865 [T	0.748	0.278	0.836	1e-58
322795855	212	hypothetical protein SINV_16511 [Solenop	0.822	0.632	0.782	6e-58
332028734	254	Lachesin [Acromyrmex echinatior]	0.822	0.527	0.782	1e-57
198472814	579	GA28999 [Drosophila pseudoobscura pseudo	0.773	0.217	0.793	5e-57
195161675	603	GL26641 [Drosophila persimilis] gi|19410	0.773	0.208	0.793	5e-57
195434819	950	GK15428 [Drosophila willistoni] gi|19416	0.723	0.124	0.793	6e-57
195116417	571	GI11243 [Drosophila mojavensis] gi|19391	0.773	0.220	0.793	1e-56
194856812	606	GG24289 [Drosophila erecta] gi|190660698	0.773	0.207	0.793	1e-56

>gi|345481544|ref|XP_001606663.2| PREDICTED: neurotrimin-like [Nasonia vitripennis]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/122 (86%), Positives = 115/122 (94%)

Query: 19  VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
           VAWLRV+TQTILTI THVITKNHRIGVTHS+ + WYLHIR+VRESD G YMCQ+NTDPMK
Sbjct: 79  VAWLRVNTQTILTIATHVITKNHRIGVTHSDHRTWYLHIRDVRESDAGDYMCQINTDPMK 138

Query: 79  SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
           SQ+GYLEVVVPPDILDYPTSTDMV+REGSNVTLKCAA+G+PKPNITWRREG ELIA GNG
Sbjct: 139 SQIGYLEVVVPPDILDYPTSTDMVVREGSNVTLKCAATGTPKPNITWRREGSELIALGNG 198

Query: 139 QE 140
           QE
Sbjct: 199 QE 200

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234395|ref|XP_974889.2| PREDICTED: similar to AGAP010221-PA [Tribolium castaneum]

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/135 (77%), Positives = 119/135 (88%)

Query: 6   LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDR 65
           ++E G   ++   VAWLRVDTQTILTI +HVITKNHRI VTHSE + WYLHIR+VRESDR
Sbjct: 40  VLECGVDNLSNFKVAWLRVDTQTILTIHSHVITKNHRIAVTHSEHRTWYLHIRDVRESDR 99

Query: 66  GWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITW 125
           GWYMCQ+NTDPMKSQ+GYL+VVVPPDILDYPTSTDMV+REGSNV+L+CAA+GSP+P I W
Sbjct: 100 GWYMCQINTDPMKSQIGYLDVVVPPDILDYPTSTDMVVREGSNVSLRCAATGSPEPTIAW 159

Query: 126 RREGGELIAQGNGQE 140
           RREGGE I  GNGQE
Sbjct: 160 RREGGESIPLGNGQE 174

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001953|gb|EEZ98400.1| hypothetical protein TcasGA2_TC000865 [Tribolium castaneum]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 102/122 (83%), Positives = 113/122 (92%)

Query: 19  VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
           VAWLRVDTQTILTI +HVITKNHRI VTHSE + WYLHIR+VRESDRGWYMCQ+NTDPMK
Sbjct: 73  VAWLRVDTQTILTIHSHVITKNHRIAVTHSEHRTWYLHIRDVRESDRGWYMCQINTDPMK 132

Query: 79  SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
           SQ+GYL+VVVPPDILDYPTSTDMV+REGSNV+L+CAA+GSP+P I WRREGGE I  GNG
Sbjct: 133 SQIGYLDVVVPPDILDYPTSTDMVVREGSNVSLRCAATGSPEPTIAWRREGGESIPLGNG 192

Query: 139 QE 140
           QE
Sbjct: 193 QE 194

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795855|gb|EFZ18534.1| hypothetical protein SINV_16511 [Solenopsis invicta]

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 116/138 (84%), Gaps = 4/138 (2%)

Query: 19  VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
           VAWLRVDTQTILTI  HVITKNHRIGVTHSE K W LHIR+VRESDRG YMCQ+NTDPMK
Sbjct: 1   VAWLRVDTQTILTIANHVITKNHRIGVTHSEHKTWLLHIRDVRESDRGNYMCQINTDPMK 60

Query: 79  SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
           SQ+GYLEVVVPPDILDYPTSTDMV+REGSNV+L+C A+GSP PNITWRRE GELI  GN 
Sbjct: 61  SQIGYLEVVVPPDILDYPTSTDMVVREGSNVSLRCEATGSPTPNITWRREDGELIILGNS 120

Query: 139 QE----DFPFFKRTKKKK 152
           QE    D P F  TK  +
Sbjct: 121 QEVPSIDGPVFNITKVNR 138

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028734|gb|EGI68765.1| Lachesin [Acromyrmex echinatior]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 116/138 (84%), Gaps = 4/138 (2%)

Query: 19  VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
           VAWLRVDTQTILTI  HVITKNHRIGVTHSE K W LHIR+VRESDRG YMCQ+NTDPMK
Sbjct: 9   VAWLRVDTQTILTIANHVITKNHRIGVTHSEHKTWLLHIRDVRESDRGNYMCQINTDPMK 68

Query: 79  SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
           SQ+GYLEVVVPPDILDYPTSTDMV+REGSNV+L+C A+GSP PNITWRRE GELI  GN 
Sbjct: 69  SQIGYLEVVVPPDILDYPTSTDMVVREGSNVSLRCEATGSPTPNITWRREDGELINLGNN 128

Query: 139 QE----DFPFFKRTKKKK 152
           QE    D P F  TK  +
Sbjct: 129 QEVPSIDGPVFNITKVNR 146

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198472814|ref|XP_002133117.1| GA28999 [Drosophila pseudoobscura pseudoobscura] gi|198139173|gb|EDY70519.1| GA28999 [Drosophila pseudoobscura pseudoobscura]

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 112/126 (88%)

Query: 19  VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
           +AWLRVDTQTILTIQ HVITKNHR+ +TH+E +AW L IR+V+ESD+GWYMCQ+NTDPMK
Sbjct: 135 IAWLRVDTQTILTIQNHVITKNHRMSITHAEKRAWILRIRDVKESDKGWYMCQINTDPMK 194

Query: 79  SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
           SQVGYL+VVVPPDILDYPTSTDMVIREGSNVTLKCAA+GSP P ITWRREGGELI   NG
Sbjct: 195 SQVGYLDVVVPPDILDYPTSTDMVIREGSNVTLKCAATGSPTPTITWRREGGELIPLPNG 254

Query: 139 QEDFPF 144
            E   +
Sbjct: 255 AEAIAY 260

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195161675|ref|XP_002021688.1| GL26641 [Drosophila persimilis] gi|194103488|gb|EDW25531.1| GL26641 [Drosophila persimilis]

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 112/126 (88%)

Query: 19  VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
           +AWLRVDTQTILTIQ HVITKNHR+ +TH+E +AW L IR+V+ESD+GWYMCQ+NTDPMK
Sbjct: 159 IAWLRVDTQTILTIQNHVITKNHRMSITHAEKRAWILRIRDVKESDKGWYMCQINTDPMK 218

Query: 79  SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
           SQVGYL+VVVPPDILDYPTSTDMVIREGSNVTLKCAA+GSP P ITWRREGGELI   NG
Sbjct: 219 SQVGYLDVVVPPDILDYPTSTDMVIREGSNVTLKCAATGSPTPTITWRREGGELIPLPNG 278

Query: 139 QEDFPF 144
            E   +
Sbjct: 279 AEAIAY 284

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195434819|ref|XP_002065400.1| GK15428 [Drosophila willistoni] gi|194161485|gb|EDW76386.1| GK15428 [Drosophila willistoni]

 Score =  225 bits (573), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 112/126 (88%)

Query: 19  VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
           +AWLRVDTQTILTIQ HVITKNHR+ +TH+E +AW L IR+V+ESD+GWYMCQ+NTDPMK
Sbjct: 157 IAWLRVDTQTILTIQNHVITKNHRMSITHAEKRAWILRIRDVKESDKGWYMCQINTDPMK 216

Query: 79  SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
           SQVGYL+VVVPPDILDYPTSTDMVIREGSNVTLKCAA+GSP P ITWRREGGELI   NG
Sbjct: 217 SQVGYLDVVVPPDILDYPTSTDMVIREGSNVTLKCAATGSPTPTITWRREGGELIPLPNG 276

Query: 139 QEDFPF 144
            E   +
Sbjct: 277 AETIAY 282

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195116417|ref|XP_002002751.1| GI11243 [Drosophila mojavensis] gi|193913326|gb|EDW12193.1| GI11243 [Drosophila mojavensis]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 112/126 (88%)

Query: 19  VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
           +AWLRVDTQTILTIQ HVITKNHR+ +TH+E +AW L IR+V+ESD+GWYMCQ+NTDPMK
Sbjct: 132 IAWLRVDTQTILTIQNHVITKNHRMSITHAEKRAWILRIRDVKESDKGWYMCQINTDPMK 191

Query: 79  SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
           SQVGYL+VVVPPDILDYPTSTDMVIREGSNVTLKCAA+GSP P ITWRREGGELI   NG
Sbjct: 192 SQVGYLDVVVPPDILDYPTSTDMVIREGSNVTLKCAATGSPTPTITWRREGGELIPLPNG 251

Query: 139 QEDFPF 144
            E   +
Sbjct: 252 AEAIAY 257

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194856812|ref|XP_001968831.1| GG24289 [Drosophila erecta] gi|190660698|gb|EDV57890.1| GG24289 [Drosophila erecta]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 112/126 (88%)

Query: 19  VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
           +AWLRVDTQTILTIQ HVITKNHR+ +TH+E +AW L IR+V+ESD+GWYMCQ+NTDPMK
Sbjct: 163 IAWLRVDTQTILTIQNHVITKNHRMSITHAEKRAWILRIRDVKESDKGWYMCQINTDPMK 222

Query: 79  SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
           SQVGYL+VVVPPDILDYPTSTDMVIREGSNVTLKCAA+GSP P ITWRREGGELI   NG
Sbjct: 223 SQVGYLDVVVPPDILDYPTSTDMVIREGSNVTLKCAATGSPTPTITWRREGGELIPLPNG 282

Query: 139 QEDFPF 144
            E   +
Sbjct: 283 AEAVAY 288

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
FB|FBgn0031837	376	CG11320 [Drosophila melanogast	0.760	0.329	0.666	1.2e-42
FB|FBgn0259245	555	CG42343 [Drosophila melanogast	0.785	0.230	0.530	8.5e-32
FB|FBgn0259714	467	CG42368 [Drosophila melanogast	0.705	0.246	0.525	3.3e-31
FB|FBgn0040823	283	dpr6 "dpr6" [Drosophila melano	0.644	0.371	0.363	1.2e-13
UNIPROTKB|Q98892	337	OPCML "Opioid-binding protein/	0.705	0.341	0.412	1.3e-13
FB|FBgn0010238	359	Lac "Lachesin" [Drosophila mel	0.717	0.325	0.352	1.6e-12
FB|FBgn0053202	360	dpr11 "dpr11" [Drosophila mela	0.717	0.325	0.354	3.6e-12
UNIPROTKB|Q7Z3B1	354	NEGR1 "Neuronal growth regulat	0.582	0.268	0.4	4.4e-12
UNIPROTKB|Q13449	338	LSAMP "Limbic system-associate	0.644	0.310	0.401	4.9e-12
RGD|71102	338	Lsamp "limbic system-associate	0.736	0.355	0.375	4.9e-12

FB|FBgn0031837 CG11320 [Drosophila melanogaster (taxid:7227)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 84/126 (66%), Positives = 100/126 (79%)

Query:    19 VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
             VAWLRVDTQTIL+IQ HVITKNHRI ++H+E + W L IR+V+ESDRGWYMCQ+NTDPMK
Sbjct:    62 VAWLRVDTQTILSIQNHVITKNHRISISHTEHRIWQLKIRDVQESDRGWYMCQINTDPMK 121

Query:    79 SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGE--LIAQG 136
             SQ+GYL+VVVPPDI+DY TS D+V   G NVTL C+A+G P P ITWRRE     LI+  
Sbjct:   122 SQMGYLDVVVPPDIVDYQTSQDVVRSTGQNVTLTCSATGVPMPTITWRREEATPILISDD 181

Query:   137 NGQEDF 142
               +E F
Sbjct:   182 GDREVF 187

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

FB|FBgn0259245 CG42343 [Drosophila melanogaster (taxid:7227)]

 Score = 352 (129.0 bits), Expect = 8.5e-32, P = 8.5e-32
 Identities = 69/130 (53%), Positives = 87/130 (66%)

Query:    10 GEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYM 69
             G+   A + VAW++ D + IL I  HVIT N R+ V H++   W L+IR V+  D G YM
Sbjct:   131 GDGSSAPAKVAWIKADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYM 190

Query:    70 CQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG 129
             CQVNTDPMK Q   LEVV+PPDI++  TS DM++ EG +  L C A G PKP ITWRRE 
Sbjct:   191 CQVNTDPMKMQTATLEVVIPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRRED 250

Query:   130 G-ELIAQGNG 138
             G E+IA+ NG
Sbjct:   251 GREIIAR-NG 259

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0259714 CG42368 [Drosophila melanogaster (taxid:7227)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/118 (52%), Positives = 84/118 (71%)

Query:    19 VAWLRVDTQTILTIQTHVITKNHRIGVTHSET---KAWYLHIREVRESDRGWYMCQVNTD 75
             VAW+  +   ILT+  HVIT+N RI VTH +    + W+LHI  V+E DRG YMCQ+NT 
Sbjct:    83 VAWMHFEQSAILTVHNHVITRNPRISVTHDKHDKHRTWFLHINNVQEEDRGRYMCQINTV 142

Query:    76 PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELI 133
               K+Q G+++VVVPP+I D  TS+D+++REG NVTL+C A GSP+P I W+R+ G  I
Sbjct:   143 TAKTQYGFVKVVVPPNIDDALTSSDIIVREGDNVTLRCKAKGSPEPTIKWKRDDGNKI 200

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0040823 dpr6 "dpr6" [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 40/110 (36%), Positives = 61/110 (55%)

Query:    14 MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQV 72
             +A  TV+W+R     ILT+ ++  T + R   TH  +T+ W L I+  ++ D G Y CQ+
Sbjct:   100 LANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTEDWTLQIKWAQKRDAGMYECQI 159

Query:    73 NTDPMKSQVGYLEVVVPP-DILDYPTSTDMVIREGSNVTLKCAASGSPKP 121
             +T P++S    L VVVP   IL  P   D+ + +GS + L C    SP+P
Sbjct:   160 STQPVRSYFVRLNVVVPTATILGGP---DLHVDKGSTINLTCTVKFSPEP 206

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q98892 OPCML "Opioid-binding protein/cell adhesion molecule homolog" [Gallus gallus (taxid:9031)]

 Score = 181 (68.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 52/126 (41%), Positives = 69/126 (54%)

Query:    19 VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWY-LHIREVRESDRGWYMCQVNTD-- 75
             VAWL  +  TIL       + ++R+ V  S TK  Y + I  V   D G Y C V TD  
Sbjct:    59 VAWL--NRSTILYAGNDKWSIDNRV-VILSNTKTQYSIKIHNVDVYDEGPYTCSVQTDNH 115

Query:    76 PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
             P  S+V +L V VPP I++   S+D+ + EGS+VTL C A G P+P +TWR   G+   Q
Sbjct:   116 PKTSRV-HLIVQVPPQIVNI--SSDITVNEGSSVTLMCLAFGRPEPTVTWRHLSGK--GQ 170

Query:   136 GNGQED 141
             G   ED
Sbjct:   171 GFVSED 176

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

FB|FBgn0010238 Lac "Lachesin" [Drosophila melanogaster (taxid:7227)]

 Score = 172 (65.6 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 43/122 (35%), Positives = 67/122 (54%)

Query:    16 ESTVAWLRVDTQTI-LTIQTHVITKNHRIGVTHSETKAWY-LHIREVRESDRGWYMCQV- 72
             E  V +L+ D+  + L+  + ++ K+ R  + +    + Y L I++++E+D G Y CQV 
Sbjct:    57 EYNVLFLKTDSDPVFLSTGSTLVIKDSRFSLRYDPNSSTYKLQIKDIQETDAGTYTCQVV 116

Query:    73 -NTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGE 131
              +T    S    L V  PP I D  T + +V  EGS V ++C ASG P P ITWRRE   
Sbjct:   117 ISTVHKVSAEVKLSVRRPPVISDNSTQS-VVASEGSEVQMECYASGYPTPTITWRRENNA 175

Query:   132 LI 133
             ++
Sbjct:   176 IL 177

GO:0007409 "axonogenesis" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IEP;IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0005918 "septate junction" evidence=IDA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0053202 dpr11 "dpr11" [Drosophila melanogaster (taxid:7227)]

 Score = 169 (64.5 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 44/124 (35%), Positives = 63/124 (50%)

Query:    14 MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN 73
             +   +V+W+R+    ILT+   V   + R        K W L I+ V+  D G Y CQV+
Sbjct:   144 LGNKSVSWIRLRDGHILTVDRAVFIADQRFLAIKQPDKYWTLQIKYVQARDAGSYECQVS 203

Query:    74 TDPMKSQVGYLEVVVP-PDILDYPTSTDMVIREGSNVTLKCAASGSPKPN--ITWRREGG 130
             T+P  S    L+VVVP  +IL  P   D  ++ GSNV L+C   G+ +P   I W   G 
Sbjct:   204 TEPKVSARVQLQVVVPRTEILGEP---DRYVKAGSNVVLRCIVRGALEPPTFIMWYH-GA 259

Query:   131 ELIA 134
             E +A
Sbjct:   260 EQLA 263

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q7Z3B1 NEGR1 "Neuronal growth regulator 1" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 40/100 (40%), Positives = 54/100 (54%)

Query:    42 RIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD--PMKSQVGYLEVVVPPDILDYPTST 99
             R+ ++    + + L I+ V  +D G Y C V T   P   QV +L V VPP I  Y  S 
Sbjct:    90 RVSISTLNKRDYSLQIQNVDVTDDGPYTCSVQTQHTPRTMQV-HLTVQVPPKI--YDISN 146

Query:   100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
             DM + EG+NVTL C A+G P+P+I+WR          NGQ
Sbjct:   147 DMTVNEGTNVTLTCLATGKPEPSISWRHISPSAKPFENGQ 186

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q13449 LSAMP "Limbic system-associated membrane protein" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 45/112 (40%), Positives = 62/112 (55%)

Query:    17 STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT-- 74
             S VAWL  +   I+       + + R+ +    +  + L I++V   D G Y C V T  
Sbjct:    60 SKVAWL--NRSGIIFAGHDKWSLDPRVELEKRHSLEYSLRIQKVDVYDEGSYTCSVQTQH 117

Query:    75 DPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWR 126
             +P  SQV YL V VPP I +   S+D+ + EGSNVTL C A+G P+P ITWR
Sbjct:   118 EPKTSQV-YLIVQVPPKISNI--SSDVTVNEGSNVTLVCMANGRPEPVITWR 166

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|71102 Lsamp "limbic system-associated membrane protein" [Rattus norvegicus (taxid:10116)]

 Score = 167 (63.8 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 48/128 (37%), Positives = 68/128 (53%)

Query:    17 STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT-- 74
             S VAWL  +   I+       + + R+ +       + L I++V   D G Y C V T  
Sbjct:    60 SKVAWL--NRSGIIFAGHDKWSLDPRVELEKRHALEYSLRIQKVDVYDEGSYTCSVQTQH 117

Query:    75 DPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA 134
             +P  SQV YL V VPP I +   S+D+ + EGSNVTL C A+G P+P ITWR     L  
Sbjct:   118 EPKTSQV-YLIVQVPPKISNI--SSDVTVNEGSNVTLVCMANGRPEPVITWRHLT-PLGR 173

Query:   135 QGNGQEDF 142
             +  G+E++
Sbjct:   174 EFEGEEEY 181

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	163
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-09
smart00409	85	smart00409, IG, Immunoglobulin	3e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-08
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	1e-07
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	3e-06
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	4e-06
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	3e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	5e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	9e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	1e-04
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-04
smart00409	85	smart00409, IG, Immunoglobulin	2e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	2e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	2e-04
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	3e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-04
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	3e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	8e-04
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.001
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	0.002
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	0.002
pfam08205	89	pfam08205, C2-set_2, CD80-like C2-set immunoglobul	0.002
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	0.003
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	0.003
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	0.004
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	0.004

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 98  STDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
              + ++EG +VTL C ASGSP P +TW ++GG+L+A+   
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGR 41

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 98  STDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
              + ++EG +VTL C ASGSP P +TW ++GG+L+A+   
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGR 41

Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 47.4 bits (113), Expect = 3e-08
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 105 EGSNVTLKCAASGSPKPNITWRREGGEL 132
           EG +VTL C A G+P PNITW ++G  L
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPL 28

Length = 63

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG 138
           V+ EG +VTL C+A G+P PN TW ++G  L +  NG
Sbjct: 10  VVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNG 46

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 99  TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN 137
            D+ ++EG +    C  +G P P ++W +  G+ +   +
Sbjct: 8   KDVEVQEGESARFTCTVTGDPDPTVSWFK-DGQPLRSSD 45

Length = 90

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 89  PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
           P  I+ +P  T  +   G NVTL+C A G+P P I WR+  G + + 
Sbjct: 1   PSIIVVFPKDTYALK--GQNVTLECFALGNPVPQIKWRKVDGSMPSS 45

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 89  PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGEL 132
           PP I+++P+  D+++ +G   TL C A G P P I W + G  L
Sbjct: 1   PPRIVEHPS--DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPL 42

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 106 GSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
           GS+V LKC ASG+P+P+ITW ++   L     G+
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE 42

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 106 GSNVTLKCAASGSPKPNITWRREG 129
           G    L C A G P+P ITWR  G
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNG 24

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.5 bits (90), Expect = 9e-05
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
           V  +C   G P P + WR+E GEL
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGEL 24

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 106 GSNVTLKCAASGSPKPNITWRREGGEL 132
           GS V LKC ASG+P+P ITW ++G   
Sbjct: 9   GSTVRLKCPASGNPRPTITWLKDGKPF 35

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 16 ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75
             V W +   + +          + R  V+ S + +  L I  V   D G Y C   T+
Sbjct: 23 PPEVTWYKQGGKLLAE--------SGRFSVSRSGSTS-TLTISNVTPEDSGTYTCAA-TN 72

Query: 76 PMKSQVGYLEVVV 88
             S      + V
Sbjct: 73 SSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 16 ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75
             V W +   + +          + R  V+ S + +  L I  V   D G Y C   T+
Sbjct: 23 PPEVTWYKQGGKLLAE--------SGRFSVSRSGSTS-TLTISNVTPEDSGTYTCAA-TN 72

Query: 76 PMKSQVGYLEVVV 88
             S      + V
Sbjct: 73 SSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 15/36 (41%), Positives = 16/36 (44%)

Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV 72
            K HRIG      K W L +  V  SD G Y C V
Sbjct: 35 FKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIV 70

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 109 VTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKK 150
           + L+C A G P P I+W + GGEL A    +  F  F +T K
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELPA---DRTKFENFNKTLK 39

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 106 GSNVTLKCAASGSPKPNITWRREGGELI 133
           GS+VTL C+ SG P+ ++TW +EG  L 
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLE 28

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 105 EGSNVTLKCAASGSPKPNITWRR 127
           E   +TL C A G P P ITWRR
Sbjct: 15  ELEQITLTCEAEGDPIPEITWRR 37

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 91  DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG 136
           + L   + T+  I  GS++  +C ASG+P+P   W + G  L ++ 
Sbjct: 1   EWLKVISDTEADI--GSSLRWECKASGNPRPAYRWLKNGQPLASEN 44

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 90  PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA 134
              +D P +T  V+ EG   T++C A GSP P + W   G  +I 
Sbjct: 1   TIPVDGPNAT--VVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ 43

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
           VTL C ASG P P ITW + G  L
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPL 24

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 106 GSNVTLKCAASGSPKPNITWRREGGE 131
           G  VT +C A+G+P+P I W++EG +
Sbjct: 1   GRTVTFQCEATGNPQPAIFWQKEGSQ 26

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 35.9 bits (82), Expect = 8e-04
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 18 TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM 77
          T+ WL+       ++ T V +       + +      L I  V   D G Y C  +    
Sbjct: 14 TITWLKNGKPLPSSVLTRVRSSRGTSSGSST------LTISNVTLEDSGTYTCVASNSAG 67

Query: 78 KSQVGY 83
                
Sbjct: 68 TVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 105 EGSNVTLKCAASGSPKPNITWRREGGEL 132
           EG  V   C A G P+P I W + G +L
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQL 28

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 88  VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG 129
           +P  IL  P S  + + EG +    C   G P P +TW REG
Sbjct: 2   LPATILTKPRS--LTVSEGESARFSCDVDGEPAPTVTWMREG 41

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 89  PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDF 142
           PP I    +  +     G +VTL C A G P+P +TW ++ GE I  G  +  F
Sbjct: 1   PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKD-GEPIESGEEKYSF 53

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|219745 pfam08205, C2-set_2, CD80-like C2-set immunoglobulin domain

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 105 EGSNVTLKC-AASGSPKPNITWRREGGELIA 134
           E   V   C +A G P P ITW  +G EL A
Sbjct: 13  ENLEVVATCSSAGGKPAPRITWYLDGRELEA 43

These domains belong to the immunoglobulin superfamily. Length = 89

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 105 EGSNVTLKCAASGSPKPNITWRR 127
           E    TL C A G P P ITW+R
Sbjct: 15  ENGAATLSCKAEGEPIPEITWKR 37

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 106 GSNVTLKCAASGSPKPNITWRR 127
           G NVTL+C A G+P P I WR+
Sbjct: 16  GQNVTLECFALGNPVPVIRWRK 37

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 100 DMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNG 138
           D  +  G    L+C+   G P+P ++WR++G  L      
Sbjct: 5   DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNER 44

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 109 VTLKCAASGSPKPNITWRREGGELIAQG 136
           V + C+A G P+P ITW ++G ++   G
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESG 28

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG3513|consensus	1051		99.85
KOG3513|consensus	1051		99.8
PHA02826	227	IL-1 receptor-like protein; Provisional	99.78
KOG4194|consensus	873		99.77
KOG4221|consensus	1381		99.74
PHA02785	326	IL-beta-binding protein; Provisional	99.64
KOG4221|consensus	1381		99.62
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.6
KOG4194|consensus	873		99.6
PHA02785	326	IL-beta-binding protein; Provisional	99.58
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.55
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.54
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.52
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.52
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.5
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.48
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.47
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.46
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.45
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.45
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.44
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.44
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.43
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.43
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.43
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.43
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.42
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.42
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.4
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.4
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.4
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.4
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.39
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.39
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.39
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.39
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.38
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.38
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.38
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.37
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.37
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.37
KOG4222|consensus	1281		99.37
KOG4222|consensus	1281		99.36
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.36
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.36
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.36
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.35
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.35
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.35
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.34
PHA03376	221	BARF1; Provisional	99.34
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.33
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.33
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.32
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.31
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.31
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.3
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.3
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.3
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.3
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.3
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.29
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.29
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.29
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.28
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.28
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.28
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.26
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.26
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.26
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.24
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.24
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.23
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.23
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.22
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.22
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.21
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.2
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.2
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.19
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.18
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.17
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.17
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.16
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.15
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.14
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.13
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.13
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.11
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.08
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.08
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.07
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.07
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.06
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	99.04
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.04
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	99.04
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.03
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.02
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	99.01
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.0
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	99.0
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.99
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.99
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.99
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.98
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.98
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.98
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.98
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.97
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.96
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.96
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.95
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.95
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.95
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.94
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.94
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.93
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.93
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.92
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.92
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.91
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.91
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.91
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.91
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.9
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.89
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.87
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.87
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.86
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.85
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.85
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.84
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.84
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.83
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.83
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.83
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.82
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.82
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.79
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.78
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.78
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.77
PHA02826	227	IL-1 receptor-like protein; Provisional	98.77
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.77
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.76
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.76
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.76
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.75
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.74
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.73
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.73
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.73
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.72
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.72
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.72
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.7
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.7
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.7
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.69
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.69
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.69
smart00409	86	IG Immunoglobulin.	98.68
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.68
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.67
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.67
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.67
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.67
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.67
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.66
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.66
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.66
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.65
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.65
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.65
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.65
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.63
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.63
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.63
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.61
smart00406	81	IGv Immunoglobulin V-Type.	98.61
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.61
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.6
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.6
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.6
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.58
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.58
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.57
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.57
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.56
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.56
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.56
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.54
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.54
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.53
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.52
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.52
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.52
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.52
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.49
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.48
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.46
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.46
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.46
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.46
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.46
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.46
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.45
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.44
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.44
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.42
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.41
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.39
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.38
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.38
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.38
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.37
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.35
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.34
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.33
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.33
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.33
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.32
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.32
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.32
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.32
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.31
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.29
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.28
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.28
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.27
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.26
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.25
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.25
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.23
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.21
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.2
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.17
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.15
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.13
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.12
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.11
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.11
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.11
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.1
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.02
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.01
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.0
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.99
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.97
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.96
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.96
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.95
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.94
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.94
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.9
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.9
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.8
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.79
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.77
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.74
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.74
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.67
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.64
smart00407	75	IGc1 Immunoglobulin C-Type.	97.61
smart00409	86	IG Immunoglobulin.	97.6
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.6
KOG3515|consensus	741		97.57
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.52
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.42
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.39
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.39
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.33
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	97.32
PHA03269	566	envelope glycoprotein C; Provisional	97.3
PHA02633	63	hypothetical protein; Provisional	97.3
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.25
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.22
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.21
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.2
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.2
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.2
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.2
PHA03270	466	envelope glycoprotein C; Provisional	97.2
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	97.15
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.08
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.07
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.07
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.05
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.04
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.04
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.03
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.01
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.01
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.98
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	96.96
PHA03273	486	envelope glycoprotein C; Provisional	96.94
KOG3515|consensus	741		96.93
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.9
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.9
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	96.89
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.79
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.77
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	96.76
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.74
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.74
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	96.65
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	96.65
PHA03271	490	envelope glycoprotein C; Provisional	96.59
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.55
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	96.53
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.44
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	96.4
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	96.32
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	96.26
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.22
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.21
PHA02987	189	Ig domain OX-2-like protein; Provisional	96.19
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	96.17
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.15
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.15
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	96.12
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	95.95
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	95.91
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.8
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	95.77
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	95.75
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	95.73
smart00407	75	IGc1 Immunoglobulin C-Type.	95.62
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	95.62
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	95.5
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	95.49
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	95.39
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	95.38
cd05770	93	IgC_beta2m Class I major histocompatibility comple	95.32
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	95.13
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	95.09
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.01
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	94.98
PHA02914	500	Immunoglobulin-like domain protein; Provisional	94.88
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	94.78
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	94.68
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	94.67
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	94.66
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	94.64
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	94.27
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	94.24
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	93.79
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	93.54
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	93.33
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	93.29
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	93.19
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	93.18
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	92.44
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	92.44
PHA02982	251	hypothetical protein; Provisional	92.36
KOG4597|consensus	560		92.14
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	91.85
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	91.73
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	91.43
KOG1480|consensus	909		91.33
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	91.29
PHA03042	286	CD47-like protein; Provisional	90.78
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	90.59
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	89.97
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	89.2
PHA02914	500	Immunoglobulin-like domain protein; Provisional	88.6
PHA03052	69	Hypothetical protein; Provisional	87.89
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	87.13
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	83.85
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	83.43
PHA03240	258	envelope glycoprotein M; Provisional	82.11
PHA03282	540	envelope glycoprotein E; Provisional	81.01

>KOG3513|consensus

Probab=99.85  E-value=8.8e-20  Score=142.41  Aligned_cols=139  Identities=25%  Similarity=0.383  Sum_probs=116.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|.+.+.|.|+|.|.|.++..+          .+|......+   ..|.|.+++.+|+|.|.|.+.|. +.....
T Consensus       257 ~~v~LECfA~G~P~P~i~W~k~~g~~~----------~~r~~~~~~~---~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~  323 (1051)
T KOG3513|consen  257 QSVKLECFALGNPTPQIKWRKVDGKPP----------PRRATYSNYG---KVLKIPNVQYEDAGEYECIAENSRGSATHS  323 (1051)
T ss_pred             CeEEEEEEecCCCCCcEEEEeCCCCCC----------Ccceeeeccc---cEEEecccCcCCCeEEEEEEecccccceee
Confidence            479999999999999999999877543          1222222222   28999999999999999999776 667778


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCC---ceEEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN---GQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~---~~~~~~~l~i~~v~~~~~~  156 (163)
                      ..+.|..+|.++..+  ....+..|+++.|.|.+.|.|.|.+.|++|+.++....+   .....+.|+|.+|+..|.+
T Consensus       324 ~~v~v~a~P~w~~~~--~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg  399 (1051)
T KOG3513|consen  324 GHVTVYAPPYWLQKP--QDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSG  399 (1051)
T ss_pred             EEEEEecCchhhccc--ceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCe
Confidence            889999999998855  467788899999999999999999999999999987766   5568899999999988764

>KOG3513|consensus

Probab=99.80  E-value=2e-18  Score=135.00  Aligned_cols=145  Identities=22%  Similarity=0.388  Sum_probs=117.7

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      ..++.+.|.+.+.|.|.|.|++ ++.++...     ....|+.+...     .|.|.+++..|+|.|.|.+.|. +....
T Consensus       346 gs~v~~eC~a~g~P~p~v~Wlk-Ng~pl~~~-----~r~~~~~i~~g-----~L~is~v~~~dsg~YQC~A~Nk~G~i~a  414 (1051)
T KOG3513|consen  346 GSNVTLECKASGKPNPTVKWLK-NGEPLEPA-----ERDPRYKIDDG-----TLIISNVQESDSGVYQCIAENKYGTIYA  414 (1051)
T ss_pred             CCCeEEEEEecCCCCCceEEee-CCeecCcc-----CCCcceEEeCC-----EEEEEecccccCeEEEeeeecccceEee
Confidence            4579999999999999999999 67666321     22233555543     8999999999999999999776 77778


Q ss_pred             eEEEEEEcC-CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhhHhh
Q psy16425         81 VGYLEVVVP-PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        81 ~~~l~v~~~-p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~~  157 (163)
                      .+.|.|... |.+...+......+..|..+.+.|...+.|.|.+.|.+.+..+....+... .++.|.|.+++++|.+|
T Consensus       415 nA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~  493 (1051)
T KOG3513|consen  415 NAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGK  493 (1051)
T ss_pred             eeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcE
Confidence            889998865 666665554456678899999999999999999999999986666666664 88999999999999886

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.78  E-value=1.2e-17  Score=113.55  Aligned_cols=97  Identities=15%  Similarity=0.232  Sum_probs=71.8

Q ss_pred             EEEEEcccCCCCCeEEEEEEEeCC-CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec-----cCCCCeEEEE
Q psy16425         53 WYLHIREVRESDRGWYMCQVNTDP-MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS-----GSPKPNITWR  126 (163)
Q Consensus        53 ~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~p~v~W~  126 (163)
                      .+|.|.+++.+|+|.|.|.+.+.. .....+.|.|..++        ....+.+|+++.|.|.+.     +.|.|.++|+
T Consensus        98 ~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~--------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~Wy  169 (227)
T PHA02826         98 ENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT--------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWY  169 (227)
T ss_pred             CeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC--------ccceEecCCCEEEEeeCCCCccccCCCceEEEE
Confidence            489999999999999999997753 33344444443211        234567899999999985     3467899999


Q ss_pred             ECCeEEEecCCceE--EeceEEEEcchhhhHhh
Q psy16425        127 REGGELIAQGNGQE--DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       127 ~~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~~  157 (163)
                      +++.++....+...  .++.|.|.+|+++|++.
T Consensus       170 Kng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~  202 (227)
T PHA02826        170 KNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGI  202 (227)
T ss_pred             ECCEECCCCCCEEEeCCCCEEEECcCCHHhCEE
Confidence            99998865544332  44689999999999874

>KOG4194|consensus

Probab=99.77  E-value=3.5e-18  Score=126.60  Aligned_cols=142  Identities=18%  Similarity=0.322  Sum_probs=115.1

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      ..+.|.+.+.|.|+|.|.|.++.....      ....|+++....+   .+.|.||+.+|.|.|+|.+++. |..+..+.
T Consensus       630 Arl~CaAtG~P~PeIawqkdggtdFPA------A~eRRl~Vmpedd---~f~Itnvk~eD~GiYtC~A~n~AG~isanAt  700 (873)
T KOG4194|consen  630 ARLECAATGHPRPEIAWQKDGGTDFPA------ARERRLHVMPEDD---VFFITNVKIEDQGIYTCTAQNVAGQISANAT  700 (873)
T ss_pred             eeeeeeccCCCCcceeehhcCCCCCch------hhhheeeecCCCC---EEEEecccccccceeEEeeeccccceeeceE
Confidence            467899999999999999955432221      4557888877664   7999999999999999999776 67788899


Q ss_pred             EEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCC-CeEEEEECCeEEEecCCce--EEeceEEEEcchhhhHhh
Q psy16425         84 LEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPK-PNITWRREGGELIAQGNGQ--EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        84 l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~~~~~~~~~~~--~~~~~l~i~~v~~~~~~~  157 (163)
                      |.|...|.+....  ....+..|+.+.|+|.+.+.|+ |+..|+++++++....+..  .++..+.+.++.-+|+++
T Consensus       701 L~V~e~p~f~~PL--~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~  775 (873)
T KOG4194|consen  701 LTVLETPSFSIPL--EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGI  775 (873)
T ss_pred             EEEecCCcccccc--cceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcce
Confidence            9999988877643  4677888999999999999887 9999999999987766444  366778888888888765

>KOG4221|consensus

Probab=99.74  E-value=5.5e-17  Score=127.46  Aligned_cols=138  Identities=22%  Similarity=0.401  Sum_probs=109.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .+++|.|++.+.|+|.|.|.+ ++..+..       ...|+.++..+    +|.|.+++..|+|.|+|++.+. -.....
T Consensus       253 ~~v~leCvvs~~p~p~v~Wlr-ng~~i~~-------ds~rivl~g~~----slliS~a~~~dSg~YtC~Atn~~D~idas  320 (1381)
T KOG4221|consen  253 DDVVLECVVSGVPKPSVKWLR-NGEKISV-------DSYRIVLVGGS----SLLISNATDDDSGKYTCRATNTNDSIDAS  320 (1381)
T ss_pred             CcEEEEEEecCCCCCceEEee-CCeeeee-------cceEEEEeccc----ceEEeccccccCceEEEEecCCCcccccc
Confidence            479999999999999999999 6666643       22456666544    8999999999999999999764 234455


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKK  154 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~  154 (163)
                      +.+.|..+|.++..+.  .....++.++.|.|.+.|.|.|.+.|++||..+.+++.... .++.+.|..+-+.|
T Consensus       321 aev~V~a~P~~~~~p~--~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sd  392 (1381)
T KOG4221|consen  321 AEVTVLAPPGFTKAPT--TLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSD  392 (1381)
T ss_pred             eEEEEEcCCCCCCCCc--ceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEeccc
Confidence            6889999999888764  66778899999999999999999999999999887766654 33447776655544

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.64  E-value=2.3e-14  Score=102.89  Aligned_cols=135  Identities=21%  Similarity=0.345  Sum_probs=87.9

Q ss_pred             eeEEEeee-----eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CC
Q psy16425          4 RMLIEIGE-----MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PM   77 (163)
Q Consensus         4 ~~~~~~~~-----~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~   77 (163)
                      +..+.|..     .+.|.+.|+|++ +.. +         ...|+.....+    .|.|.+++.+|+|.|+|.+.+. +.
T Consensus       138 ~~~i~C~~~~~~~~~~~~~~i~W~k-~~~-~---------~~~r~~~~~~~----~L~i~~v~~~d~G~Y~C~~~n~~g~  202 (326)
T PHA02785        138 TGEMVCPNINAFIASNVNADIIWSG-HRR-L---------RNKRLKQRTPG----IITIEDVRKNDAGYYTCVLKYIYGD  202 (326)
T ss_pred             cEEEECCChhhcccCCCCceEEEcc-CCc-c---------CCcceEecCCC----eEEEeecChhhCeEEEEEEEeccCC
Confidence            34556642     256889999987 332 1         22344443333    7999999999999999999765 22


Q ss_pred             ce----EeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCC---eEEEEECCeEEEecCC-----ce---
Q psy16425         78 KS----QVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKP---NITWRREGGELIAQGN-----GQ---  139 (163)
Q Consensus        78 ~~----~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~v~W~~~~~~~~~~~~-----~~---  139 (163)
                      ..    ..+.|.|..   +|.+ ..|  ....+..|+.+.|.|.+.|.|.+   .+.|++||..+...+.     ..   
T Consensus       203 ~~~~~t~~v~l~V~~~~~pp~~-~~p--~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~  279 (326)
T PHA02785        203 KTYNVTRIVKLEVRDRIIPPTM-QLP--EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVAN  279 (326)
T ss_pred             EEEeEEEEEEEEEeccCCCcee-cCC--CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEec
Confidence            21    223344432   2222 222  35566789999999999998864   7999999987643210     00   


Q ss_pred             ---------EEeceEEEEcchhhhHh
Q psy16425        140 ---------EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 ---------~~~~~l~i~~v~~~~~~  156 (163)
                               ...+.|+|.+|+.+|.+
T Consensus       280 ~~~~~~~~~~~~~~L~I~~V~~~D~G  305 (326)
T PHA02785        280 KIYTTDKRRVITSRLNINPVKEEDAT  305 (326)
T ss_pred             CccccccceeeeEEEEECCcchhcCe
Confidence                     12457999999999975

>KOG4221|consensus

Probab=99.62  E-value=1.6e-14  Score=114.01  Aligned_cols=140  Identities=27%  Similarity=0.439  Sum_probs=107.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~   80 (163)
                      ..+++.|...+.|.+.|.|.+ +..++        ..+.|+.+..++    .|.|.++++.|.|.|.|.+.+.+.  .+.
T Consensus       156 ~ta~f~c~vn~e~~p~i~w~k-n~~pl--------~~~~r~i~lpsG----~L~I~~~qp~d~g~yrc~vt~g~~~r~S~  222 (1381)
T KOG4221|consen  156 QTALFSCEVNAEPVPTIMWLK-NDQPL--------PLDSRVIVLPSG----ALEISGLQPSDTGEYRCVVTGGASQRTSN  222 (1381)
T ss_pred             CcEEEEEEEcCccCceeEEec-ccccc--------cCCCcEEEcCCC----cEEecccccCCCceEEEEEecCCcCCccc
Confidence            457888988889999999999 44544        334577777776    899999999999999999976532  355


Q ss_pred             eEEEEEEcCCc------ccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce--EEeceEEEEcchh
Q psy16425         81 VGYLEVVVPPD------ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ--EDFPFFKRTKKKK  152 (163)
Q Consensus        81 ~~~l~v~~~p~------~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~--~~~~~l~i~~v~~  152 (163)
                      .+.|.+...|.      +...+  ....+.+|+++.|.|.+.+.|.|.|.|.+|+..+..+....  ..++.|.|.+++-
T Consensus       223 ~a~ltv~s~~~~~~~~~fl~~p--~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~  300 (1381)
T KOG4221|consen  223 EAELTVLSDPGALNKLVFLDEP--SNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATD  300 (1381)
T ss_pred             eeEEEecCCcccccceeeecCC--CccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEecccc
Confidence            66777763332      22222  35667889999999999999999999999999887664222  3578899999999


Q ss_pred             hhHhh
Q psy16425        153 KKKKK  157 (163)
Q Consensus       153 ~~~~~  157 (163)
                      +|+++
T Consensus       301 ~dSg~  305 (1381)
T KOG4221|consen  301 DDSGK  305 (1381)
T ss_pred             ccCce
Confidence            98775

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.60  E-value=1.9e-14  Score=81.53  Aligned_cols=73  Identities=18%  Similarity=0.372  Sum_probs=54.7

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      +.|.|...+.|.|.|.|+| ++..+.       ....|+.+.....+..+|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus         1 v~l~C~v~G~P~P~i~W~k-~~~~i~-------~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~   72 (75)
T cd05892           1 VKLECQISAIPPPKIFWKR-NNEMVQ-------YNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHAR   72 (75)
T ss_pred             CEEEEEEEecCCCeEEEEE-CCEECc-------CCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEE
Confidence            4688999999999999999 555542       12346666555445568999999999999999999776 55555555


Q ss_pred             EE
Q psy16425         84 LE   85 (163)
Q Consensus        84 l~   85 (163)
                      |.
T Consensus        73 L~   74 (75)
T cd05892          73 LD   74 (75)
T ss_pred             Ee
Confidence            54

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>KOG4194|consensus

Probab=99.60  E-value=7.4e-15  Score=109.32  Aligned_cols=152  Identities=22%  Similarity=0.409  Sum_probs=105.6

Q ss_pred             cceeEEEeeeec--cCCCEEEEEEcCCceEEeeeee---EEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          2 AARMLIEIGEML--MAESTVAWLRVDTQTILTIQTH---VITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         2 ~~~~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~~~---~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ++++.+.|.+.+  ..+..|.|.+. +....-...+   .+....|-...+.. .....|++.||+..|+|.|.|.+.|.
T Consensus       518 g~nirftC~a~sssasplsi~WR~d-nevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~  596 (873)
T KOG4194|consen  518 GENIRFTCNAYSSSASPLSIEWRKD-NEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNH  596 (873)
T ss_pred             ccceEEEEEeccCCCCCceeEeeec-cccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecc
Confidence            346677777655  66778899994 3322111111   11111121111111 13347999999999999999999877


Q ss_pred             -C-CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc-e----EEeceEEEE
Q psy16425         76 -P-MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG-Q----EDFPFFKRT  148 (163)
Q Consensus        76 -~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~-~----~~~~~l~i~  148 (163)
                       | .-+..+.+.|...|.+...|  ...++..|+.++|.|.+.|.|.|+|.|.++|+.--+..+. .    .+...|.|.
T Consensus       597 FGStysqk~KltV~~~PsFtktP--~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~It  674 (873)
T KOG4194|consen  597 FGSTYSQKAKLTVNQAPSFTKTP--EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFIT  674 (873)
T ss_pred             cCcchhheeEEEeeccCccccCc--ccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEe
Confidence             3 34677899999999999877  4778999999999999999999999999998762222111 1    156789999


Q ss_pred             cchhhhHh
Q psy16425        149 KKKKKKKK  156 (163)
Q Consensus       149 ~v~~~~~~  156 (163)
                      +|+.+|.+
T Consensus       675 nvk~eD~G  682 (873)
T KOG4194|consen  675 NVKIEDQG  682 (873)
T ss_pred             cccccccc
Confidence            99999875

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.58  E-value=5.3e-14  Score=101.01  Aligned_cols=135  Identities=14%  Similarity=0.175  Sum_probs=87.4

Q ss_pred             eeEEEeee-----eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CC
Q psy16425          4 RMLIEIGE-----MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PM   77 (163)
Q Consensus         4 ~~~~~~~~-----~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~   77 (163)
                      .+++.|..     .+.|.+.|.|+|.+. ..           .+......+   ..|.|.++..+|+|.|+|.+.|. +.
T Consensus        43 ~~~l~C~~~~~~~~g~p~~~i~W~K~g~-~~-----------~~~~~~~~g---~~l~i~~~~~~DsG~Y~C~a~N~~g~  107 (326)
T PHA02785         43 PVILPCPQINTLSSGYNILDILWEKRGA-DN-----------DRIIPIDNG---SNMLILNPTQSDSGIYICITKNETYC  107 (326)
T ss_pred             CEEEECCCccccccCCCCceEEEEECCC-cc-----------ceEEEccCC---ceEEEcccCcccCeEEEEEEECCCcc
Confidence            36667764     578889999999532 11           011111111   15889999999999999999776 34


Q ss_pred             ceEeEEEEEEcCC--cccccCCCCcEEEeCCCcEEEEeE-----eccCCCCeEEEEECCeEEEecCCce-EEeceEEEEc
Q psy16425         78 KSQVGYLEVVVPP--DILDYPTSTDMVIREGSNVTLKCA-----ASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTK  149 (163)
Q Consensus        78 ~~~~~~l~v~~~p--~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~  149 (163)
                      ....+.|.|....  .+...+  ....+.+|..+.+.|.     ..+.|+|.+.|+++. .+ ...+.. ..++.|.|.+
T Consensus       108 ~~~s~~L~V~~~~~~~~~~~~--~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~-~~~r~~~~~~~~L~i~~  183 (326)
T PHA02785        108 DMMSLNLTIVSVSESNIDLIS--YPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RL-RNKRLKQRTPGIITIED  183 (326)
T ss_pred             eEEEEEEEEEecCCCccceee--ccceecccCcEEEECCChhhcccCCCCceEEEccCC-cc-CCcceEecCCCeEEEee
Confidence            4555667665432  222111  2344668999999997     236789999998754 22 222222 2356899999


Q ss_pred             chhhhHhh
Q psy16425        150 KKKKKKKK  157 (163)
Q Consensus       150 v~~~~~~~  157 (163)
                      |+.+|++.
T Consensus       184 v~~~d~G~  191 (326)
T PHA02785        184 VRKNDAGY  191 (326)
T ss_pred             cChhhCeE
Confidence            99999864

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.55  E-value=7.9e-14  Score=79.03  Aligned_cols=73  Identities=15%  Similarity=0.360  Sum_probs=52.9

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      +.+.|...+.|.|.|.|+| ++..+.       ....|+.+.....+..+|.|.+++++|+|.|+|.+.|. +..+..+.
T Consensus         1 v~l~C~v~G~P~P~v~W~k-~~~~l~-------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~   72 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKK-ENESLT-------HNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR   72 (75)
T ss_pred             CEEEEEEeEecCCEEEEEE-CCEECC-------CCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence            4688999999999999999 444432       12345655544434447999999999999999999776 44455555


Q ss_pred             EE
Q psy16425         84 LE   85 (163)
Q Consensus        84 l~   85 (163)
                      |.
T Consensus        73 L~   74 (75)
T cd05893          73 LD   74 (75)
T ss_pred             Ee
Confidence            54

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.54  E-value=1e-13  Score=78.18  Aligned_cols=70  Identities=23%  Similarity=0.434  Sum_probs=53.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.+.|...+.|.|.|.|+| ++..+        ....|+.+...+    +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus         2 ~~~~l~C~~~g~P~p~v~W~k-~~~~l--------~~~~r~~~~~~g----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   68 (73)
T cd05852           2 GRVIIECKPKAAPKPKFSWSK-GTELL--------VNNSRISIWDDG----SLEILNITKLDEGSYTCFAENNRGKANST   68 (73)
T ss_pred             CeEEEEEecceeCCCEEEEEe-CCEec--------ccCCCEEEcCCC----EEEECcCChhHCEEEEEEEECCCCceeEE
Confidence            478999999999999999999 45443        223566665544    8999999999999999999776 444555


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        69 ~~l~   72 (73)
T cd05852          69 GVLS   72 (73)
T ss_pred             EEEE
Confidence            5554

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.52  E-value=3e-13  Score=76.74  Aligned_cols=73  Identities=16%  Similarity=0.343  Sum_probs=53.4

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      +.|.|...+.|.|.|.|+| ++..+.       ....|+.+.....+..+|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus         1 v~L~C~v~G~P~P~v~W~k-~~~~i~-------~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   72 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKK-NNEMLT-------YNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNAR   72 (75)
T ss_pred             CEEEEEEeecCCCeEEEEE-CCEECC-------CCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEE
Confidence            4688999999999999999 555542       12345665554444557999999999999999999776 44445555


Q ss_pred             EE
Q psy16425         84 LE   85 (163)
Q Consensus        84 l~   85 (163)
                      |.
T Consensus        73 l~   74 (75)
T cd05744          73 LD   74 (75)
T ss_pred             Ee
Confidence            54

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.52  E-value=7.6e-13  Score=78.30  Aligned_cols=83  Identities=20%  Similarity=0.355  Sum_probs=61.5

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ...+.|.|...+.|.+.|.|++.++. +...+......+.|+.+.......++|.|.+++.+|+|.|+|.+.........
T Consensus        12 G~tv~L~C~v~g~~~~~v~W~k~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~   90 (95)
T cd05882          12 GGTVTLKCGVKEHDNSSLQWSNTAQQ-TLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMPVRTAK   90 (95)
T ss_pred             CCcEEEEEEEeCCCCCeEEEeccCcc-EEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeeccccEE
Confidence            34789999999999999999996544 33334444445677776666556789999999999999999999765445555


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        91 ~~~~   94 (95)
T cd05882          91 ATVT   94 (95)
T ss_pred             EEEE
Confidence            5543

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.50  E-value=3.4e-13  Score=75.73  Aligned_cols=68  Identities=18%  Similarity=0.369  Sum_probs=49.6

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVG   82 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~   82 (163)
                      ++.+.|...+.|.|.|.|++ ++..+.        ...++.....+    .|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k-~g~~~~--------~~~~~~~~~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~   67 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVK-NGDMVI--------PSDYFKIVKEH----NLQVLGLVKSDEGFYQCIAENDVGNVQASA   67 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEE-CCeECC--------CCCCEEEEecC----CEEEEcCCcccCEEEEEEEEcCCCEEEEEE
Confidence            57899999999999999999 444431        23344544443    5888899999999999999776 4444444


Q ss_pred             EE
Q psy16425         83 YL   84 (163)
Q Consensus        83 ~l   84 (163)
                      .|
T Consensus        68 ~L   69 (71)
T cd05723          68 QL   69 (71)
T ss_pred             EE
Confidence            44

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.48  E-value=5e-13  Score=75.66  Aligned_cols=70  Identities=21%  Similarity=0.238  Sum_probs=51.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+.        ...++.....+    +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus         3 ~~v~l~C~~~g~P~p~i~W~k-~g~~~~--------~~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   69 (74)
T cd05745           3 QTVDFLCEAQGYPQPVIAWTK-GGSQLS--------VDRRHLVLSSG----TLRISRVALHDQGQYECQAVNIVGSQRTV   69 (74)
T ss_pred             CeEEEEeECCEecCCEEEEEE-CCEECC--------CCCCeEEccCC----eEEEeeCCHHhCEEEEEEEEeCCCceeEE
Confidence            478999999999999999999 554431        22333333333    8999999999999999999776 444454


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        70 ~~L~   73 (74)
T cd05745          70 AQLT   73 (74)
T ss_pred             EEEe
Confidence            4444

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.47  E-value=2.3e-12  Score=76.83  Aligned_cols=79  Identities=20%  Similarity=0.245  Sum_probs=60.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.+.|...+.|.+.+.|+| ++..+.        ...++...... ....|.|.++..+|+|.|+|.+.|. +.....
T Consensus        16 ~~v~l~C~~~G~p~p~v~W~k-dg~~l~--------~~~~~~~~~~~-~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~   85 (98)
T cd05762          16 ESVELFCKVTGTQPITCTWMK-FRKQIQ--------EGEGIKIENTE-NSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ   85 (98)
T ss_pred             CEEEEEEEEcccCCCceEEEE-CCEEec--------CCCcEEEEecC-CeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence            468899999999999999999 666552        22344444322 2348999999999999999999877 666777


Q ss_pred             EEEEEEcCCc
Q psy16425         82 GYLEVVVPPD   91 (163)
Q Consensus        82 ~~l~v~~~p~   91 (163)
                      +.|.|...|.
T Consensus        86 ~~l~V~~~P~   95 (98)
T cd05762          86 VNLTVVDKPD   95 (98)
T ss_pred             EEEEEecCCC
Confidence            8888887663

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.46  E-value=2.4e-12  Score=74.80  Aligned_cols=81  Identities=21%  Similarity=0.165  Sum_probs=54.8

Q ss_pred             eeEEEeeeeccCCC--EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          4 RMLIEIGEMLMAES--TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         4 ~~~~~~~~~~~~~~--~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      .+.|.|.+.+.|.|  .+.|++ ++..+....     ...++..........+|.|.+++..|+|.|+|.+.+. +....
T Consensus         2 ~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~   75 (85)
T cd05854           2 NLTLQCHASHDPTMDLTFTWSL-DDFPIDLDK-----PNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA   75 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEE-CCeEccccC-----CCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence            46788888888776  689999 565542211     1222221111112348999999999999999999776 56667


Q ss_pred             eEEEEEEcCC
Q psy16425         81 VGYLEVVVPP   90 (163)
Q Consensus        81 ~~~l~v~~~p   90 (163)
                      .+.|.|..+|
T Consensus        76 ~~~L~V~~~P   85 (85)
T cd05854          76 SATLVVRGPP   85 (85)
T ss_pred             EEEEEEECCC
Confidence            7888887765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.45  E-value=1.3e-12  Score=73.81  Aligned_cols=70  Identities=26%  Similarity=0.401  Sum_probs=52.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.|.+.|++ ++..+        ....++.+...+    +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus         2 ~~v~L~C~~~g~P~p~v~W~k-~~~~~--------~~~~~~~~~~~~----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   68 (73)
T cd04969           2 GDVIIECKPKAAPKPTISWSK-GTELL--------TNSSRICIWPDG----SLEILNVTKSDEGKYTCFAENFFGKANST   68 (73)
T ss_pred             CeEEEEEeeeEcCCCEEEEEE-CCEEc--------ccCCCEEECCCC----eEEEccCChhHCEEEEEEEECCCCceEEE
Confidence            578899999999999999999 55543        233455554443    7999999999999999999776 444444


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        69 ~~l~   72 (73)
T cd04969          69 GSLS   72 (73)
T ss_pred             EEEE
Confidence            4443

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.45  E-value=2e-12  Score=75.95  Aligned_cols=81  Identities=22%  Similarity=0.350  Sum_probs=57.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++.+..... ..........|+.+...+    +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus         2 ~~v~L~C~~~g~P~p~v~W~k~g~~~~~-~~~~~~~~~~r~~v~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   76 (90)
T cd05726           2 RTVTFQCEATGNPQPAIFWQKEGSQNLL-FSYQPPQSSSRFSVSQTG----DLTITNVQRSDVGYYICQTLNVAGSILTK   76 (90)
T ss_pred             CEEEEEEECCccCCCEEEEEeCCCccee-ecccCCCCCCeEEECCCC----eEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence            4688999999999999999995433221 111111234566655443    7999999999999999999776 555666


Q ss_pred             EEEEEEc
Q psy16425         82 GYLEVVV   88 (163)
Q Consensus        82 ~~l~v~~   88 (163)
                      +.|.|..
T Consensus        77 ~~l~V~~   83 (90)
T cd05726          77 AYLEVTD   83 (90)
T ss_pred             EEEEEee
Confidence            7777764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.44  E-value=1.4e-12  Score=75.30  Aligned_cols=81  Identities=20%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             eeEEEeeee--ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          4 RMLIEIGEM--LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         4 ~~~~~~~~~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      .+.+.|...  +.+++.+.|++ ++..+...     ....++..........+|.|.+++.+|+|.|+|.+.+. ...+.
T Consensus         2 ~~~l~C~v~~d~~l~~~~~W~~-dg~~i~~~-----~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a   75 (85)
T cd05853           2 SIVLPCQVSHDHSLDIVFTWSF-NGHLIDFQ-----KDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA   75 (85)
T ss_pred             cEEEEEEeccCCCCCcEEEEEE-CCEECccc-----CCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence            356667754  46789999999 67666321     11224444322122238999999999999999999877 56677


Q ss_pred             eEEEEEEcCC
Q psy16425         81 VGYLEVVVPP   90 (163)
Q Consensus        81 ~~~l~v~~~p   90 (163)
                      .+.|.|.++|
T Consensus        76 ~a~L~V~~pP   85 (85)
T cd05853          76 AADLIVRGPP   85 (85)
T ss_pred             EEEEEEecCC
Confidence            8889998876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.44  E-value=4.4e-12  Score=75.23  Aligned_cols=75  Identities=16%  Similarity=0.269  Sum_probs=52.0

Q ss_pred             ceeEEEeeeeccCC-CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          3 ARMLIEIGEMLMAE-STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ..+.+.|...+.|. |.|.|++.++..+..       ...|+.+........+|.|.+++.+|+|.|+|.+.|.......
T Consensus        16 ~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-------~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~   88 (96)
T cd05865          16 ESKFFLCQVAGEAKDKDISWFSPNGEKLTP-------NQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE   88 (96)
T ss_pred             CeEEEEEEEeCCCCCCEEEEECCCCcCccc-------cCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence            46889999999985 799999855554321       1234544433333458999999999999999999886433333


Q ss_pred             EEE
Q psy16425         82 GYL   84 (163)
Q Consensus        82 ~~l   84 (163)
                      +.+
T Consensus        89 ~s~   91 (96)
T cd05865          89 ATV   91 (96)
T ss_pred             EEE
Confidence            333

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.43  E-value=3.7e-12  Score=75.13  Aligned_cols=73  Identities=18%  Similarity=0.196  Sum_probs=51.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+.        ...++..........+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        17 ~~v~L~C~v~G~P~p~v~W~k-~g~~l~--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05737          17 KTLNLTCTVFGDPDPEVSWLK-NDQALA--------LSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVD   87 (92)
T ss_pred             CcEEEEEEEEecCCCeEEEEE-CCEECc--------cCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence            367889999999999999999 555442        2234444332223458999999999999999999775 444443


Q ss_pred             EEE
Q psy16425         82 GYL   84 (163)
Q Consensus        82 ~~l   84 (163)
                      +.+
T Consensus        88 ~~v   90 (92)
T cd05737          88 VTV   90 (92)
T ss_pred             EEE
Confidence            333

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.43  E-value=1.7e-12  Score=71.67  Aligned_cols=65  Identities=17%  Similarity=0.260  Sum_probs=48.4

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      +.+.|...+.|.|.+.||| ++..+..          +       .....|.|.++..+|+|.|+|.+.|. +.......
T Consensus         1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~----------~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~   62 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYK-DGKLISG----------K-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRIS   62 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEE-CCEECcc----------c-------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEE
Confidence            3578889999999999999 6665521          0       01228999999999999999999876 54455555


Q ss_pred             EEEE
Q psy16425         84 LEVV   87 (163)
Q Consensus        84 l~v~   87 (163)
                      +.+.
T Consensus        63 ~~l~   66 (67)
T cd05863          63 LELI   66 (67)
T ss_pred             EEEE
Confidence            6554

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.43  E-value=1.9e-12  Score=72.61  Aligned_cols=69  Identities=16%  Similarity=0.282  Sum_probs=48.7

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      +.+.|...+.|.|.+.|+| ++..+..        ..++...     ..+|.|.+++.+|+|.|+|.+.|. +.......
T Consensus         1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~--------~~~~~~~-----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~   66 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYK-NGKLISE--------KNRTKKS-----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLT   66 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEE-CCEECCC--------CCEEEcC-----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEE
Confidence            4578889999999999999 6655421        1222211     128999999999999999999776 34445555


Q ss_pred             EEEE
Q psy16425         84 LEVV   87 (163)
Q Consensus        84 l~v~   87 (163)
                      +.+.
T Consensus        67 ~~~~   70 (71)
T cd04976          67 FTLV   70 (71)
T ss_pred             EEEE
Confidence            5543

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.43  E-value=3.5e-12  Score=80.96  Aligned_cols=76  Identities=28%  Similarity=0.402  Sum_probs=59.6

Q ss_pred             EEEEcccCCCCCeEEEEEEEeC-CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCe
Q psy16425         54 YLHIREVRESDRGWYMCQVNTD-PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGG  130 (163)
Q Consensus        54 ~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~  130 (163)
                      +|.|.+++.+|+|.|.|.+.+. +.......|.+..+|.+...+.  .....+|+.+.|.|.+.|. |+ +.+.|++++.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~--~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~   79 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLE--KLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP   79 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCC--CceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence            7999999999999999999654 4556667888888887765443  2233478899999999985 54 4899999975


Q ss_pred             E
Q psy16425        131 E  131 (163)
Q Consensus       131 ~  131 (163)
                      .
T Consensus        80 ~   80 (139)
T cd05771          80 G   80 (139)
T ss_pred             C
Confidence            4

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.42  E-value=6.8e-12  Score=73.35  Aligned_cols=80  Identities=19%  Similarity=0.231  Sum_probs=57.7

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeC--C-CceEEEEEcccCCCCCeEEEEEEEeC-CCce
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHS--E-TKAWYLHIREVRESDRGWYMCQVNTD-PMKS   79 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~--~-~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~   79 (163)
                      .+.|.|...+.|++.+.|++ ++..+..       ...|+.+...  + ....+|.|.++..+|+|.|+|.+.|. +...
T Consensus         3 ~~~l~C~~~g~p~~~i~W~k-~~~~i~~-------~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~   74 (88)
T cd05735           3 KKEMSCTAHGEKPIIVRWEK-EDRIINP-------EMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR   74 (88)
T ss_pred             eEEEEEEEECCCCCEEEEee-CCEECCC-------CCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce
Confidence            57888999999999999999 5544311       1234443321  1 12357999999999999999999777 6667


Q ss_pred             EeEEEEEEcCCc
Q psy16425         80 QVGYLEVVVPPD   91 (163)
Q Consensus        80 ~~~~l~v~~~p~   91 (163)
                      ..+.|.|..+|.
T Consensus        75 ~~~~L~V~~~P~   86 (88)
T cd05735          75 GIIQLTVQEPPD   86 (88)
T ss_pred             EEEEEEEeCCCC
Confidence            777888887653

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.42  E-value=1.8e-12  Score=72.40  Aligned_cols=66  Identities=24%  Similarity=0.391  Sum_probs=48.1

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      +.|.|...+.|.|.|.|++ ++..+        ....++.+...+    .|.|.+++.+|+|.|+|.+.|. +..+..+.
T Consensus         1 v~L~C~~~g~P~p~i~W~k-~g~~~--------~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   67 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNK-DGVQV--------TESGKFHISPEG----YLAIRDVGVADQGRYECVARNTIGYASVSMV   67 (69)
T ss_pred             CEeEecceEeCCCEEEEEE-CCEEC--------CCCCCEEECCCC----EEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence            4678899999999999999 55443        223444444333    8999999999999999999776 44444333

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.40  E-value=1.1e-11  Score=72.18  Aligned_cols=73  Identities=15%  Similarity=0.229  Sum_probs=52.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+..       ...|+...... ....|.|.++..+|+|.|+|.+.|. +.....
T Consensus        11 ~~v~l~c~~~G~P~P~v~W~k-~~~~i~~-------~~~r~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   81 (86)
T cd05894          11 NKLRLDVPISGEPAPTVTWSR-GDKAFTE-------TEGRVRVESYK-DLSSFVIEGAEREDEGVYTITVTNPVGEDHAS   81 (86)
T ss_pred             CEEEEEeeEeecCCCeEEEEE-CCEECcc-------CCCeEEEEEcC-CeEEEEECCCccCcCEEEEEEEEeCCCcEEEE
Confidence            368899999999999999999 5555421       12355544332 2458999999999999999999776 443443


Q ss_pred             EEE
Q psy16425         82 GYL   84 (163)
Q Consensus        82 ~~l   84 (163)
                      +.|
T Consensus        82 ~~l   84 (86)
T cd05894          82 LFV   84 (86)
T ss_pred             EEE
Confidence            333

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.40  E-value=8.7e-12  Score=70.53  Aligned_cols=70  Identities=20%  Similarity=0.274  Sum_probs=49.9

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      +.|.|...+.|.|.+.|++ ++..+        ....++.+.... ....|.|.++..+|+|.|+|.+.|. +.....+.
T Consensus         2 ~~l~c~~~G~P~p~v~W~k-~g~~l--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   71 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSK-DGKPL--------KLSGRVQIETTA-SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN   71 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEE-CCEEc--------CCCCeEEEEECC-CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence            5788999999999999999 55544        123344443322 3458999999999999999999776 44344333


Q ss_pred             E
Q psy16425         84 L   84 (163)
Q Consensus        84 l   84 (163)
                      |
T Consensus        72 l   72 (74)
T cd05748          72 V   72 (74)
T ss_pred             E
Confidence            3

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.40  E-value=9.3e-12  Score=72.33  Aligned_cols=81  Identities=19%  Similarity=0.142  Sum_probs=53.8

Q ss_pred             eeEEEeeeeccCCC--EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          4 RMLIEIGEMLMAES--TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         4 ~~~~~~~~~~~~~~--~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      .+.|.|...+.|.+  .+.|++ ++..+....     ...++..........+|.|.+++..|+|.|+|.+.|. +....
T Consensus         2 ~~~L~C~~~g~P~p~i~~~W~~-~g~~i~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~   75 (85)
T cd04970           2 SITLQCHASHDPTLDLTFTWSF-NGVPIDFDK-----DGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA   75 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEE-CCeEeeccC-----CCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence            46788888888877  668999 666553211     0111111111112338999999999999999999776 55667


Q ss_pred             eEEEEEEcCC
Q psy16425         81 VGYLEVVVPP   90 (163)
Q Consensus        81 ~~~l~v~~~p   90 (163)
                      .+.|.|..+|
T Consensus        76 ~~~l~V~~pP   85 (85)
T cd04970          76 SADLIVRGPP   85 (85)
T ss_pred             EEEEEEECCC
Confidence            7788888765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.40  E-value=4.6e-12  Score=71.07  Aligned_cols=69  Identities=22%  Similarity=0.316  Sum_probs=47.1

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      +.|.|...+.|.|.|.|++.+ ..+..         .+.....   ...+|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~-~~~~~---------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   67 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRID-GPLSP---------NRTKKLN---NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYT   67 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECC-cCCCC---------CceeEEc---CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEE
Confidence            468899999999999999954 33311         1111111   1238999999999999999999776 44444444


Q ss_pred             EEE
Q psy16425         84 LEV   86 (163)
Q Consensus        84 l~v   86 (163)
                      |.|
T Consensus        68 l~V   70 (71)
T cd05876          68 VTV   70 (71)
T ss_pred             EEE
Confidence            443

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.39  E-value=6.5e-12  Score=75.17  Aligned_cols=76  Identities=18%  Similarity=0.133  Sum_probs=53.2

Q ss_pred             ceeEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeC----CCceEEEEEcccCCCCCeEEEEEEEeC-C
Q psy16425          3 ARMLIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHS----ETKAWYLHIREVRESDRGWYMCQVNTD-P   76 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~   76 (163)
                      .++.|.|...+ .|+|.|.|+| ++.++...        ........    ......|.|..+..+|+|.|+|.+.|. +
T Consensus        19 ~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~~--------~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          19 ENLNLVVEVEAYPPPPHINWTY-DNRTLTNK--------LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             CCEEEEEEEEecCCCCccEEEe-CCeeCCCC--------cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            46889999999 9999999999 66665321        11111111    011248999999999999999999876 5


Q ss_pred             CceEeEEEEEE
Q psy16425         77 MKSQVGYLEVV   87 (163)
Q Consensus        77 ~~~~~~~l~v~   87 (163)
                      ..+..+.|.|.
T Consensus        90 ~~~~t~~L~V~  100 (101)
T cd04975          90 SKSLTFELYVN  100 (101)
T ss_pred             cEEEEEEEEEE
Confidence            55566666665

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.39  E-value=7.2e-12  Score=71.26  Aligned_cols=73  Identities=16%  Similarity=0.212  Sum_probs=51.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+....     ...++... .+    +|.|.+++.+|+|.|.|.+.|. +.....
T Consensus         2 ~~v~l~C~~~G~P~p~i~W~k-~g~~i~~~~-----~~~~~~~~-~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   70 (76)
T cd05867           2 ETARLDCQVEGIPTPNITWSI-NGAPIEGTD-----PDPRRHVS-SG----ALILTDVQPSDTAVYQCEARNRHGNLLAN   70 (76)
T ss_pred             CeEEEEEEeeEeCCCeEEEEE-CCEECCCCC-----CCceEEee-CC----EEEECCCChhhCEEEEEEEECCCCeEEEE
Confidence            468899999999999999999 555442110     11233322 22    7999999999999999999775 444455


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus        71 ~~l~V   75 (76)
T cd05867          71 AHVHV   75 (76)
T ss_pred             EEEEE
Confidence            55544

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.39  E-value=4.9e-12  Score=70.56  Aligned_cols=67  Identities=21%  Similarity=0.274  Sum_probs=47.9

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      +.|.|...+.|.|.+.|++.++ .+         ...++......    +|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~-~~---------~~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   66 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDG-EL---------PKGRAEILDDK----SLKIRNVTAGDEGSYTCEAENMVGKIEASAS   66 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCc-cC---------CCCcEEEeeCC----EEEECcCChhHCEEEEEEEEcCCCcEEEEEE
Confidence            4678889999999999999533 22         12344444333    8999999999999999999776 44444444


Q ss_pred             EE
Q psy16425         84 LE   85 (163)
Q Consensus        84 l~   85 (163)
                      |.
T Consensus        67 l~   68 (69)
T cd05725          67 LT   68 (69)
T ss_pred             EE
Confidence            43

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.39  E-value=4.5e-12  Score=75.91  Aligned_cols=81  Identities=19%  Similarity=0.305  Sum_probs=53.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.+.|...+.|.|.+.|+| ++.++..............   .......+|.|.+++.+|+|.|+|.+.|. +..+..
T Consensus        19 ~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~~~~~~~~~~~~---~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t   94 (101)
T cd05859          19 EVKEFVVEVEAYPPPQIRWLK-DNRTLIENLTEITTSEHNV---QETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYT   94 (101)
T ss_pred             CcEEEEEEEEEeCCCceEEEE-CCEECcCCcceEEeccccc---cceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEE
Confidence            457889999999999999999 6666532211111100000   00011238999999999999999999776 455556


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus        95 ~~l~V~  100 (101)
T cd05859          95 FALQIQ  100 (101)
T ss_pred             EEEEEE
Confidence            666664

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.38  E-value=6.8e-12  Score=73.36  Aligned_cols=70  Identities=14%  Similarity=0.256  Sum_probs=50.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.|.|.|++. +..+.        ...++...     +..|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        17 ~~v~l~C~~~G~P~P~v~W~k~-~~~~~--------~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   82 (88)
T cd05851          17 QNVTLECFALGNPVPVIRWRKI-LEPMP--------ATAEISMS-----GAVLKIFNIQPEDEGTYECEAENIKGKDKHQ   82 (88)
T ss_pred             CcEEEEEEecccCCCEEEEEEC-CcCCC--------CCCEEecC-----CCEEEECcCChhhCEEEEEEEEcCCCceEEE
Confidence            4789999999999999999994 43331        11222221     127999999999999999999776 555555


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus        83 ~~l~V   87 (88)
T cd05851          83 ARVYV   87 (88)
T ss_pred             EEEEE
Confidence            55554

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.38  E-value=1.4e-11  Score=73.06  Aligned_cols=83  Identities=22%  Similarity=0.358  Sum_probs=59.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      .++.|.|...+.|.+.|.|++.++..+. ........++|+.........++|.|.+++.+|+|.|.|.+.+.......+
T Consensus        13 ~~v~L~C~~~~~p~~~v~W~~~~~~~l~-~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~   91 (95)
T cd07701          13 GTANLTCRVDQNDNTSLQWSNPAQQTLY-FDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVKTSKA   91 (95)
T ss_pred             CcEEEEEEEecCCceEEEEeCCCCeEEE-EcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCccEEE
Confidence            4688999999999999999985543332 222222345677765544456799999999999999999997655555555


Q ss_pred             EEEE
Q psy16425         83 YLEV   86 (163)
Q Consensus        83 ~l~v   86 (163)
                      .|.|
T Consensus        92 ~l~v   95 (95)
T cd07701          92 YLTV   95 (95)
T ss_pred             EEEC
Confidence            5543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.38  E-value=8.5e-12  Score=70.57  Aligned_cols=71  Identities=27%  Similarity=0.333  Sum_probs=49.8

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--eEeE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--SQVG   82 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~~~~   82 (163)
                      +.|.|...+.|.|.|.|++ ++..+..      ....++.....+    +|.|.+++.+|+|.|+|.+.|....  +..+
T Consensus         1 a~l~C~~~G~P~p~v~W~k-~~~~~~~------~~~~~~~~~~~g----~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a   69 (74)
T cd05738           1 ATMLCAASGNPDPEITWFK-DFLPVDT------TSNGRIKQLRSG----ALQIENSEESDQGKYECVATNSAGTRYSAPA   69 (74)
T ss_pred             CEEEEEEeEecCCEEEEEE-CCEECcc------CCCCCEEEcCCc----EEEECCCChhhCEEEEEEEECCCCceEcccE
Confidence            3678899999999999999 4544311      123455554433    7999999999999999999876433  3444


Q ss_pred             EEEE
Q psy16425         83 YLEV   86 (163)
Q Consensus        83 ~l~v   86 (163)
                      .|.|
T Consensus        70 ~l~v   73 (74)
T cd05738          70 NLYV   73 (74)
T ss_pred             EEEE
Confidence            4443

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.37  E-value=6e-12  Score=70.26  Aligned_cols=67  Identities=25%  Similarity=0.338  Sum_probs=47.9

Q ss_pred             EEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEEE
Q psy16425          6 LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGYL   84 (163)
Q Consensus         6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l   84 (163)
                      .+.|...+.|.|.+.||| ++..+..        ..++  ..    ...|.|.++..+|+|.|+|.+.|. +.......+
T Consensus         2 ~~~c~v~G~P~P~v~W~k-~g~~l~~--------~~~~--~~----~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~   66 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYK-NGQLIVL--------NHTF--KR----GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTF   66 (70)
T ss_pred             EEEeEEEEeCCCEEEEEE-CCEECCC--------CCEE--cc----CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEE
Confidence            578889999999999999 6665521        1111  11    127999999999999999999777 444444555


Q ss_pred             EEE
Q psy16425         85 EVV   87 (163)
Q Consensus        85 ~v~   87 (163)
                      .+.
T Consensus        67 ~l~   69 (70)
T cd05864          67 QLV   69 (70)
T ss_pred             EEE
Confidence            443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.37  E-value=1.1e-11  Score=70.60  Aligned_cols=66  Identities=12%  Similarity=0.169  Sum_probs=45.5

Q ss_pred             EEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeE----EEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          7 IEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRI----GVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         7 ~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      +.|...+.|.|.|+||| ++..+..        ..+.    .........+.|.|.++..+|+|.|+|.|.|. |.....
T Consensus         3 i~~~v~G~P~Pti~W~k-ng~~l~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~   73 (79)
T cd05855           3 IPFTVKGNPKPTLQWFH-EGAILNE--------SEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN   73 (79)
T ss_pred             EEEEEeEeCCCceEEEE-CCEECCC--------CcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence            56788899999999999 6665521        1111    11111223458999999999999999999876 433333

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.37  E-value=8.8e-12  Score=70.69  Aligned_cols=72  Identities=19%  Similarity=0.280  Sum_probs=48.9

Q ss_pred             EEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEEE
Q psy16425          6 LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGYL   84 (163)
Q Consensus         6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l   84 (163)
                      .|.|...+.|.|.|.|++.+..... .     ....++......   ..|.|.+++.+|+|.|.|.+.|. +.....+.|
T Consensus         2 ~l~C~~~G~P~P~v~W~k~~~~~~~-~-----~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l   72 (75)
T cd05763           2 RLECAATGHPTPQIAWQKDGGTDFP-A-----ARERRMHVMPED---DVFFIVDVKIEDTGVYSCTAQNTAGSISANATL   72 (75)
T ss_pred             EeEeecccccCCEEEEEeCCCccCC-c-----ccccceEEecCC---CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence            5778889999999999995432111 0     122344433221   27999999999999999999776 444555555


Q ss_pred             EE
Q psy16425         85 EV   86 (163)
Q Consensus        85 ~v   86 (163)
                      .|
T Consensus        73 ~V   74 (75)
T cd05763          73 TV   74 (75)
T ss_pred             EE
Confidence            54

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG4222|consensus

Probab=99.37  E-value=2.3e-12  Score=101.51  Aligned_cols=138  Identities=22%  Similarity=0.347  Sum_probs=105.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      +++.+.|...+.|.|.|.|.+.+. .+         ...|+.+..+.   .+|.|..+++.|+|.|.|.+.+. +.....
T Consensus       241 ~~~~f~c~v~GdP~P~Vrwkk~~~-~~---------P~~ry~i~~d~---qtl~i~r~tp~deg~y~C~a~n~vG~l~as  307 (1281)
T KOG4222|consen  241 AAAEFDCRVGGDPQPTVRWKKDDP-SL---------PRSRYSILDDT---QTLRIDRVTPTDEGTYVCPAENLVGGLEAS  307 (1281)
T ss_pred             cccccccccCCCCCCceeeeccCC-CC---------Cccceeeeecc---ccccccccCCCcccceeeeccccccccccc
Confidence            457788999999999999999433 22         23556665541   28999999999999999999766 677788


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC-Cce--------EEeceEEEEcchh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG-NGQ--------EDFPFFKRTKKKK  152 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~--------~~~~~l~i~~v~~  152 (163)
                      +.++|+.+|.+...+.  ...+..|..++|.|.+.|+|.|.+.|.+.+..-.... ...        ...+.|+|++|.+
T Consensus       308 a~ltV~apP~f~kkp~--dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~  385 (1281)
T KOG4222|consen  308 ATLTVQAPPSFGKKPR--DQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQ  385 (1281)
T ss_pred             cceEEecCcccccccC--ccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccc
Confidence            8999999998887664  4556779999999999999999999999876532221 111        1335889999888


Q ss_pred             hhH
Q psy16425        153 KKK  155 (163)
Q Consensus       153 ~~~  155 (163)
                      .|-
T Consensus       386 ~d~  388 (1281)
T KOG4222|consen  386 SDE  388 (1281)
T ss_pred             ccc
Confidence            763

>KOG4222|consensus

Probab=99.36  E-value=3.1e-12  Score=100.86  Aligned_cols=135  Identities=23%  Similarity=0.407  Sum_probs=98.3

Q ss_pred             eeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC--CceE
Q psy16425          4 RMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP--MKSQ   80 (163)
Q Consensus         4 ~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~--~~~~   80 (163)
                      +++++|.. -+.|.+.|.|.| ++.++..      ....++.+...+    .|.|.++...|+|.|.|.++|..  ..+.
T Consensus       148 ~avlEcgpP~ghpeptvSw~K-dg~pl~~------~~~~~~~lisgG----~LlIsnvrksD~GtY~CVatNmvG~ReS~  216 (1281)
T KOG4222|consen  148 EAVLECGPPRGHPEPTVSWVK-DGKPLDH------YDVPIIALISGG----NLLISNVRKSDEGTYACVATNMVGERESI  216 (1281)
T ss_pred             eeEEeccCCCCCCCCcceeec-CCCcccc------ccceeEEEecCC----cEEEeccccCCCceeeeeecccccccccc
Confidence            56777774 456779999999 6665531      122344444444    89999999999999999997763  3456


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcch
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKK  151 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~  151 (163)
                      .+.|.|+..|.+...+  ..+.+..|..+.++|.+.|.|.|.+.|.+++..+....... .....+.|.+++
T Consensus       217 ~A~lsv~e~P~f~~rp--~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~t  286 (1281)
T KOG4222|consen  217 PARLSVQEKPWFWKRP--KDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVT  286 (1281)
T ss_pred             cceeeeccCCcccccc--ccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccC
Confidence            6789999999887755  36778889999999999999999999999876654332222 233556666555

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.36  E-value=1.4e-11  Score=71.50  Aligned_cols=74  Identities=19%  Similarity=0.296  Sum_probs=49.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+.....     ..++...   ...++|.|.++..+|+|.|+|.+.|. +.....
T Consensus        10 ~~~~L~C~~~g~P~p~i~W~k-~g~~l~~~~~-----~~~~~~~---~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~   80 (85)
T cd05857          10 NTVKFRCPAAGNPTPTMRWLK-NGKEFKQEHR-----IGGYKVR---NQHWSLIMESVVPSDKGNYTCVVENEYGSINHT   80 (85)
T ss_pred             CEEEEEEEcCCCCCCEEEEEE-CCEECCCCCc-----eeeeEEe---CCceEEEEccCCcccCEEEEEEEEeCCCEEEEE
Confidence            468899999999999999999 5554421100     0111111   12457999999999999999999776 444444


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        81 ~~l~   84 (85)
T cd05857          81 YHLD   84 (85)
T ss_pred             EEEE
Confidence            4443

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.36  E-value=1.2e-11  Score=70.45  Aligned_cols=60  Identities=18%  Similarity=0.312  Sum_probs=43.8

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|...+.|.|.|.|+| ++..+..       ...++.+...   ...|.|.+++++|+|.|.|.+.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k-~g~~l~~-------~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~   60 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFR-DGTPLSD-------GQGNYSVSSK---ERTLTLRSAGPDDSGLYYCCAHNA   60 (77)
T ss_pred             CEEEEEeeecCCCcEEEEE-CCEECCC-------CCccEEEeCC---CCEEEEeeCCcccCEEEEEEEEeC
Confidence            4688899999999999999 5554321       1123333221   227999999999999999999876

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.36  E-value=1.8e-11  Score=69.16  Aligned_cols=70  Identities=19%  Similarity=0.209  Sum_probs=49.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.|.+.|++.++..+.        ...+......+    +|.|.++..+|+|.|+|.+.|. +.....
T Consensus         2 ~~~~l~C~~~g~P~p~v~W~~~~~~~~~--------~~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   69 (74)
T cd05764           2 QRATLRCKARGDPEPAIHWISPDGKLIS--------NSSRTLVYDNG----TLDILITTVKDTGSFTCIASNAAGEATAT   69 (74)
T ss_pred             CeEEEEEEccCcCCCEEEEEeCCCEEec--------CCCeEEEecCC----EEEEEECChhhCEEEEEEEECCCCeEEEE
Confidence            4678899999999999999985554431        22333333333    7999999999999999999776 333333


Q ss_pred             EEE
Q psy16425         82 GYL   84 (163)
Q Consensus        82 ~~l   84 (163)
                      +.|
T Consensus        70 ~~l   72 (74)
T cd05764          70 VEL   72 (74)
T ss_pred             EEE
Confidence            333

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.35  E-value=5.6e-12  Score=74.05  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=50.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC---CceEEeeeeeEEecCCeEEEEeC------CCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD---TQTILTIQTHVITKNHRIGVTHS------ETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~---~~~~~~~~~~~~~~~~r~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .++.+.|...+.|.|.|+|+|.+   +..+..      ...........      ......|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   75 (90)
T cd04974           2 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGP------DGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAG   75 (90)
T ss_pred             CcEEEEEEEeCCCCCeEEEEEecccCCceeCC------CCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEee
Confidence            46889999999999999999942   111110      00011111110      0112379999999999999999997


Q ss_pred             eC-CCceEeEEEEE
Q psy16425         74 TD-PMKSQVGYLEV   86 (163)
Q Consensus        74 ~~-~~~~~~~~l~v   86 (163)
                      |. +.....+.|.|
T Consensus        76 N~~G~~~~sa~L~V   89 (90)
T cd04974          76 NSIGPSHHSAWLTV   89 (90)
T ss_pred             cccCcccCCEEEEe
Confidence            76 55556666665

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.35  E-value=2.4e-11  Score=69.46  Aligned_cols=63  Identities=21%  Similarity=0.338  Sum_probs=47.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+        ....++...... +...|.|.+++.+|+|.|+|.+.|.
T Consensus         2 ~~v~l~C~~~g~P~p~v~W~~-~~~~~--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~   64 (78)
T cd05743           2 ETVEFTCVATGVPTPIINWRL-NWGHV--------PDSARVSITSEG-GYGTLTIRDVKESDQGAYTCEAINT   64 (78)
T ss_pred             CEEEEEEEEEEecCCEEEEEE-CCeEC--------CCCCCEEEEECC-CEEEEEECCCChHHCEEEEEEEEec
Confidence            468899999999999999999 44332        122344443322 3458999999999999999999776

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.35  E-value=1.9e-11  Score=70.04  Aligned_cols=66  Identities=24%  Similarity=0.409  Sum_probs=46.2

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|...+.|.|.|.|++.++.... .........+|+.....+    +|.|.++..+|+|.|.|.+.|.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~-~~~~~~~~~~r~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~   66 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHP-QHTHTCCLAGRIQLLSNG----SLLIKHVLEEDSGYYLCKVSND   66 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCcccc-ccccccccCCCEEEecCC----eEEECcCCcccCEEEEEEEEeC
Confidence            46889999999999999995432210 000011134555554443    8999999999999999999876

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.34  E-value=2.4e-11  Score=69.86  Aligned_cols=70  Identities=11%  Similarity=0.095  Sum_probs=45.8

Q ss_pred             EEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEe----CCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          7 IEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTH----SETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         7 ~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      +.|...+.|.|.|+||| ++..+.....      .......    .......|.|.+++.+|+|.|+|.+.|. +.....
T Consensus         3 i~~~v~G~P~P~v~W~k-~g~~i~~~~~------~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~   75 (81)
T cd04971           3 IPFTVRGNPKPTLTWYH-NGAVLNESDY------IRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKS   75 (81)
T ss_pred             EEEEeEeeCCCcEEEEE-CCEECcCCCc------eeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeE
Confidence            56778899999999999 6665532110      0011111    1123457999999999999999999876 433443


Q ss_pred             EE
Q psy16425         82 GY   83 (163)
Q Consensus        82 ~~   83 (163)
                      ..
T Consensus        76 ~~   77 (81)
T cd04971          76 IS   77 (81)
T ss_pred             EE
Confidence            33

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>PHA03376 BARF1; Provisional

Probab=99.34  E-value=8.5e-11  Score=76.02  Aligned_cols=125  Identities=18%  Similarity=0.298  Sum_probs=74.9

Q ss_pred             ceeEEEeeee---ccCCCEEEEEEc----CCceEEee----eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425          3 ARMLIEIGEM---LMAESTVAWLRV----DTQTILTI----QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         3 ~~~~~~~~~~---~~~~~~i~W~k~----~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .+++|.|.-.   ......|.|+|.    ....+...    ....+...+++.+..+. ++.+|.|.+++++|.|.|+|.
T Consensus        27 Eda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~-gnvsLvI~~l~lSDdGtY~C~  105 (221)
T PHA03376         27 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-NTFFLVVTAANISHDGNYLCR  105 (221)
T ss_pred             CcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC-CeEEEEEEeeeecCCceEEEE
Confidence            4678888754   335678999993    22222211    12233556666665555 788999999999999999999


Q ss_pred             EEeCCCce-EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCe
Q psy16425         72 VNTDPMKS-QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGG  130 (163)
Q Consensus        72 ~~~~~~~~-~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~  130 (163)
                      ++...... ..-.|.+..+..+.....  ......-+..++.|.+-|+|.|.++|..+.+
T Consensus       106 fQkge~~~~k~ehLt~V~~~~Lsv~a~--~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        106 MKLGETEVTKQEHLSVVKPLTLSVHSE--RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             EEcCCCceeeeeeeeeeecceEEEEec--cccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            96543222 112222222111111000  0001113557899998889999999998754

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.33  E-value=5.1e-11  Score=70.23  Aligned_cols=64  Identities=16%  Similarity=0.311  Sum_probs=47.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.+.|...+.|. .|.|++.++..+..        ..++.....+....+|.|.+++.+|+|.|+|.+.|.
T Consensus        16 ~~~~l~C~~~G~p~-~i~W~~~~~~~~~~--------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   79 (92)
T cd04977          16 ESKFFLCQVIGEPK-DISWFSPNGEKLVT--------QQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDA   79 (92)
T ss_pred             CeEEEEEEeEeeCC-eEEEECCCCCEecc--------CCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcC
Confidence            46888999888874 99999855554421        233444444445568999999999999999999876

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.33  E-value=2.3e-11  Score=69.18  Aligned_cols=73  Identities=11%  Similarity=0.156  Sum_probs=50.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.+.|.+.+.|.|.|.|++ ++..+....      .........    ..|.|.+++.+|+|.|.|.+.|. +.....
T Consensus         2 ~~~~l~C~a~G~P~P~i~W~k-~g~~i~~~~------~~~~~~~~~----~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (76)
T cd05868           2 EDGTLICRANGNPKPSISWLT-NGVPIEIAP------TDPSRKVDG----DTIIFSKVQERSSAVYQCNASNEYGYLLAN   70 (76)
T ss_pred             CCEEEEEEeeEeCCCeEEEEE-CCEEccccC------CCceEEecC----CEEEECCCCHhhCEEEEEEEEcCCCEEEEE
Confidence            367899999999999999999 665542111      111111111    17899999999999999999776 555555


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus        71 ~~l~v   75 (76)
T cd05868          71 AFVNV   75 (76)
T ss_pred             EEEEe
Confidence            66654

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.32  E-value=4e-11  Score=71.53  Aligned_cols=80  Identities=20%  Similarity=0.285  Sum_probs=53.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.|.|.|++.+........  .....+|+.+... .+..+|.|.+++.+|+|.|+|.+.|. |.....
T Consensus        17 ~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~--~~~~~~r~~v~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   93 (98)
T cd05870          17 GAATLSCKAEGEPIPEITWKRASDGHTFSEG--DKSPDGRIEVKGQ-HGESSLHIKDVKLSDSGRYDCEAASRIGGHQKS   93 (98)
T ss_pred             CcEEEEEecccCCCCeEEEEECCCCceeccC--CcCcCceEEEeec-CCeeEEEEeeCCcCCCEEEEEEEeccCCcceeE
Confidence            4688999999999999999995322211100  0112346655432 23458999999999999999999776 544454


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        94 ~~l~   97 (98)
T cd05870          94 MYLD   97 (98)
T ss_pred             EEEe
Confidence            4444

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.31  E-value=2.5e-11  Score=71.25  Aligned_cols=82  Identities=17%  Similarity=0.224  Sum_probs=51.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC---CceEEeeeee--EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-C
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD---TQTILTIQTH--VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-P   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~---~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~   76 (163)
                      .++.|.|...+.|.|.|.|++.+   +..+...+..  .......+...  ......|.|.+++.+|+|.|+|.+.|. +
T Consensus         2 ~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           2 STVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTT--DKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceec--CCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            46889999999999999999842   2211100000  00000001110  011247999999999999999999776 5


Q ss_pred             CceEeEEEEE
Q psy16425         77 MKSQVGYLEV   86 (163)
Q Consensus        77 ~~~~~~~l~v   86 (163)
                      .....+.|.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            5566666665

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.31  E-value=3.2e-11  Score=70.06  Aligned_cols=68  Identities=22%  Similarity=0.316  Sum_probs=49.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.+.|...+.|.|.+.|++ ++..+        ....++.... +    .|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        15 ~~~~l~C~~~g~p~p~v~W~k-~g~~~--------~~~~~~~~~~-~----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   80 (85)
T cd05728          15 SSLRWECKASGNPRPAYRWLK-NGQPL--------ASENRIEVEA-G----DLRITKLSLSDSGMYQCVAENKHGTIYAS   80 (85)
T ss_pred             CcEEEEEEeeEeCCCEEEEEE-CCEEC--------CCCCeEEEeC-C----EEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence            468899999999999999999 55543        2233444432 2    7999999999999999999776 333344


Q ss_pred             EEE
Q psy16425         82 GYL   84 (163)
Q Consensus        82 ~~l   84 (163)
                      +.|
T Consensus        81 ~~l   83 (85)
T cd05728          81 AEL   83 (85)
T ss_pred             EEE
Confidence            444

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.30  E-value=8.3e-11  Score=68.92  Aligned_cols=63  Identities=19%  Similarity=0.353  Sum_probs=50.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.+.|...+.|.+.+.|++ ++..+.        ...++...... ...+|.|.+++.+|+|.|+|.+.+.
T Consensus        16 ~~~~l~c~~~~~p~~~v~W~~-~~~~l~--------~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen   16 ESVTLECEVSGNPPPTVTWYK-NGRPLT--------SSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             SEEEEEEEEEESSSSEEEEEE-TTEEEE--------SSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEET
T ss_pred             CEEEEEEEEEeCCCCcccccc-ccccee--------eeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEEC
Confidence            468889999999999999999 566553        24455544443 5669999999999999999999776

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.30  E-value=1.3e-10  Score=68.55  Aligned_cols=83  Identities=22%  Similarity=0.273  Sum_probs=63.4

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      +..+.|.|.........+.|++.+...+++.+ .....+.|+.........++|.|.+++.+|+|.|.|.+...+..+..
T Consensus        12 G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~-~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~   90 (95)
T cd05881          12 GEVAIISCRVKNNDDSVIQLLNPNRQTIYFRD-VRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAY   90 (95)
T ss_pred             CCcEEEEEEEccCCccEEEEEecCCcEEEecC-ccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcccCeEEE
Confidence            34688999998888888999997755555444 34457789988875567889999999999999999999766555554


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      ..+.
T Consensus        91 ~~~~   94 (95)
T cd05881          91 TTIT   94 (95)
T ss_pred             EEEE
Confidence            4443

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.30  E-value=7.7e-11  Score=69.87  Aligned_cols=74  Identities=16%  Similarity=0.241  Sum_probs=52.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+..       ...++.....+   ..|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        19 ~~v~L~C~~~g~P~p~v~W~k-~g~~~~~-------~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (95)
T cd05730          19 QSVTLACDADGFPEPTMTWTK-DGEPIES-------GEEKYSFNEDG---SEMTILDVDKLDEAEYTCIAENKAGEQEAE   87 (95)
T ss_pred             CCEEEEEeccEeCCCEEEEEE-CCEECcC-------CCCEEEEeCCC---CEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence            468899999999999999999 5554321       11333333222   26999999999999999999776 445555


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus        88 ~~L~V~   93 (95)
T cd05730          88 IHLKVF   93 (95)
T ss_pred             EEEEEE
Confidence            666654

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.30  E-value=3.7e-11  Score=68.22  Aligned_cols=73  Identities=12%  Similarity=0.176  Sum_probs=50.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.+.|...+.|.|.|.|++ ++..+.....      .......    ...|.|.+++.+|+|.|+|.+.|. +.....
T Consensus         2 ~~~~l~C~~~g~P~p~i~W~~-~g~~~~~~~~------~~~~~~~----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (76)
T cd04978           2 ETGRLDCEAEGIPQPTITWRL-NGVPIEELPP------DPRRRVD----GGTLILSNVQPNDTAVYQCNASNVHGYLLAN   70 (76)
T ss_pred             CeEEEEEEceeeCCCEEEEEE-CCEECCCCCC------cceEEcc----CCEEEECCCChhhCEEEEEEEEccCCeEEEe
Confidence            468899999999999999999 5554422110      0011111    128999999999999999999776 444455


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus        71 ~~l~V   75 (76)
T cd04978          71 AFVHV   75 (76)
T ss_pred             EEEEE
Confidence            55544

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.30  E-value=5.8e-11  Score=70.71  Aligned_cols=78  Identities=21%  Similarity=0.319  Sum_probs=52.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.|.|+|++ ++..+.....   ...+++.+... .....|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        18 ~~v~l~C~~~G~P~P~v~W~~-~~~~~~~~~~---~~~~~~~v~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   92 (97)
T cd05869          18 EQITLTCEASGDPIPSITWRT-STRNISSEEK---TLDGHIVVRSH-ARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS   92 (97)
T ss_pred             CCEEEEEEeeEeCCCEEEEEE-CCccccCCcc---ccCccEEEEcC-ccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence            568899999999999999999 4443321100   11234433322 12348999999999999999999776 444555


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        93 ~~l~   96 (97)
T cd05869          93 MYLE   96 (97)
T ss_pred             EEEE
Confidence            5554

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.29  E-value=8.5e-11  Score=69.27  Aligned_cols=63  Identities=21%  Similarity=0.276  Sum_probs=45.4

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .+.|.|...+.|.|.+.||+. +..+        ....++..........+|.|.+++.+|+|.|+|.+.|.
T Consensus        18 ~v~L~C~v~g~P~p~i~W~k~-~~~~--------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   80 (92)
T cd05891          18 TLNLTCTVFGNPDPEVIWFKN-DQDI--------ELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNK   80 (92)
T ss_pred             EEEEEEEEEEeCCCeEEEEEC-CEEC--------CCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence            577889888899999999994 4333        12233333222222347999999999999999999765

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.29  E-value=9.5e-11  Score=68.92  Aligned_cols=66  Identities=18%  Similarity=0.293  Sum_probs=48.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   78 (163)
                      ..+.+.|...+.|. .+.|++.++..+.        ...|+.....+ ....|.|.++..+|+|.|+|.+.|....
T Consensus        16 ~~v~l~C~~~G~P~-~v~W~k~~g~~~~--------~~~r~~~~~~g-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   81 (92)
T cd05866          16 ESKFFTCTAIGEPE-SIDWYNPQGEKIV--------SSQRVVVQKEG-VRSRLTIYNANIEDAGIYRCQATDAKGQ   81 (92)
T ss_pred             CeEEEEEEEEEeCC-eEEEEeCCCeEec--------CCCCEEEEeCC-CeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence            46889999999898 8999985555442        23455554332 2348999999999999999999876433

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.29  E-value=7.9e-11  Score=68.82  Aligned_cols=70  Identities=19%  Similarity=0.308  Sum_probs=50.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.|.|.|++.+. .+..        ..+.. ..    +.+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        17 ~~v~l~C~~~g~P~p~v~W~k~~~-~~~~--------~~~~~-~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   82 (88)
T cd04968          17 QNVTLECFALGNPVPQIKWRKVDG-SMPS--------SAEIS-MS----GAVLKIPNIQFEDEGTYECEAENIKGKDTHQ   82 (88)
T ss_pred             CcEEEEEEeeEeCCCEEEEEECCC-cCCC--------ccEEE-Ee----CCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence            468899999999999999999543 2211        11111 12    228999999999999999999776 555555


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus        83 ~~l~V   87 (88)
T cd04968          83 GRIYV   87 (88)
T ss_pred             EEEEE
Confidence            55654

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.28  E-value=5.7e-11  Score=66.53  Aligned_cols=57  Identities=25%  Similarity=0.362  Sum_probs=41.9

Q ss_pred             EEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          6 LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .+.|...+.|.|++.|+| ++.++..       ...++... .    .+|.|.+++.+|+|.|+|.+.+.
T Consensus         2 ~l~c~v~g~P~P~v~W~k-dg~~l~~-------~~~~~~~~-~----~~L~I~~v~~~D~G~YtC~a~~~   58 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLK-DGLPAAE-------KCSRYHVD-G----YSLVIKDVTEEDAGIYTILLGIK   58 (72)
T ss_pred             eEEeeEEEcCCCeEEEEE-CCEECCC-------CCcEEEeC-C----CEEEECcCCHHHCEEEEEEEEcc
Confidence            467888899999999999 5554421       11233221 1    27999999999999999999765

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.28  E-value=1.5e-10  Score=70.40  Aligned_cols=80  Identities=15%  Similarity=0.115  Sum_probs=56.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCC---CceEEEEEcccC-CCCCeEEEEEEEeC-CC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSE---TKAWYLHIREVR-ESDRGWYMCQVNTD-PM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~i~~v~-~~d~G~Y~C~~~~~-~~   77 (163)
                      .++.|.|.+.+.|.+.+.|++ ++..+...       ..|+......   .....|.|.++. .+|.|.|+|.+.|. +.
T Consensus        24 ~~v~L~C~a~G~P~p~i~W~k-~g~~l~~~-------~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~   95 (109)
T cd05773          24 SDANLVCQAQGVPRVQFRWAK-NGVPLDLG-------NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE   95 (109)
T ss_pred             CEEEEEEECcccCCCEEEEEE-CCEECCCC-------CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc
Confidence            468999999999999999999 56554211       1233222111   123479999997 69999999999877 55


Q ss_pred             ceEeEEEEEEcCC
Q psy16425         78 KSQVGYLEVVVPP   90 (163)
Q Consensus        78 ~~~~~~l~v~~~p   90 (163)
                      ....+.|.+...|
T Consensus        96 ~~~~i~L~~~~~p  108 (109)
T cd05773          96 DSLDIQLVSTSRP  108 (109)
T ss_pred             CcEEEEEEecCCC
Confidence            6677777777665

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.28  E-value=3.4e-11  Score=67.45  Aligned_cols=69  Identities=19%  Similarity=0.316  Sum_probs=46.3

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      +.|.|...+.|.|.+.|++.+ ..+.         ..+.....   ....|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~-~~~~---------~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   67 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIG-GELP---------ADRTKFEN---FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTIS   67 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECC-eECC---------CCceeEec---CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEE
Confidence            467889999999999999943 3321         11111111   1227999999999999999999776 44444444


Q ss_pred             EEE
Q psy16425         84 LEV   86 (163)
Q Consensus        84 l~v   86 (163)
                      |.|
T Consensus        68 l~V   70 (71)
T cd05731          68 VTV   70 (71)
T ss_pred             EEE
Confidence            443

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.26  E-value=5.9e-11  Score=68.21  Aligned_cols=76  Identities=14%  Similarity=0.154  Sum_probs=48.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      ..+.|.|...+.|.|.|.|++... .........  ....++.....    .+|.|.+++.+|+|.|+|.+.|. +....
T Consensus         2 ~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   75 (81)
T cd05765           2 ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPN--HVRGNVVVTNI----GQLVIYNAQPQDAGLYTCTARNSGGLLRA   75 (81)
T ss_pred             CcEEEEeeccccCCCcEEEEecCCCCcceeecCC--cccCCEEEccc----cEEEEccCCcccCEEEEEEEecCCceEEE
Confidence            467899999999999999999521 111000000  00122222222    38999999999999999999776 44444


Q ss_pred             eEEE
Q psy16425         81 VGYL   84 (163)
Q Consensus        81 ~~~l   84 (163)
                      .+.|
T Consensus        76 ~~~l   79 (81)
T cd05765          76 NFPL   79 (81)
T ss_pred             EEEE
Confidence            4444

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.26  E-value=1.5e-10  Score=68.22  Aligned_cols=69  Identities=23%  Similarity=0.279  Sum_probs=50.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.+.|++ ++..+        ....|+.+.... ...+|.|.+++.+|+|.|.|.+.|. +.....
T Consensus        19 ~~~~L~C~~~g~P~p~v~W~k-~g~~l--------~~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   88 (92)
T cd05747          19 ESARFSCDVDGEPAPTVTWMR-EGQII--------VSSQRHQITSTE-YKSTFEISKVQMSDEGNYTVVVENSEGKQEAQ   88 (92)
T ss_pred             CcEEEEEEEeecCCCEEEEEE-CCEEC--------CCCCcEEEEEcC-CeeEEEECCCCcccCEeEEEEEEcCCCCEeEE
Confidence            468899999999999999999 45443        223445444322 3458999999999999999999776 433333

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.26  E-value=2e-10  Score=68.08  Aligned_cols=83  Identities=18%  Similarity=0.308  Sum_probs=57.3

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ...+.|.|...+.+.+.+.|++.++..+.. .........|+.........++|.|.+++.+|+|.|+|.+.........
T Consensus        12 G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~   90 (95)
T cd05717          12 GGTATLKCRVKNNDNSSLQWSNPNQQTLYF-NDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPVQTAK   90 (95)
T ss_pred             CCCEEEEEEECCCCCceEEEeCCCCcEEEe-ccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCCceEE
Confidence            346888998888888999999855544332 2111123467776544445678999999999999999999765544555


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        91 ~~~~   94 (95)
T cd05717          91 ATVT   94 (95)
T ss_pred             EEEE
Confidence            5554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.24  E-value=1.6e-10  Score=67.79  Aligned_cols=73  Identities=7%  Similarity=0.112  Sum_probs=50.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.+.|...+.|.|.|.|++ ++..+..        ..+.... .......|.|.+++.+|.|.|.|.+.|. +.....
T Consensus        16 ~~v~l~C~~~G~P~p~v~W~~-~g~~~~~--------~~~~~~~-~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~   85 (90)
T cd04972          16 GTATIRCTAEGSPLPKVEWII-AGLIVIQ--------TRTDTLE-TTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS   85 (90)
T ss_pred             CcEEEEEEEEEcCCCeEEEEE-CCEEccC--------CccEEEE-ecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence            468899999999999999999 5544321        1111111 1122448999999999999999999776 444444


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        86 ~~L~   89 (90)
T cd04972          86 VQVT   89 (90)
T ss_pred             EEEe
Confidence            4443

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.24  E-value=6.7e-11  Score=68.06  Aligned_cols=62  Identities=19%  Similarity=0.446  Sum_probs=44.7

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..++.|.|...+.|.|.+.|++ ++..+...        ....   ......+|.|.+++.+|+|.|+|.+.|.
T Consensus         9 G~~v~L~C~~~g~p~p~i~W~k-~~~~~~~~--------~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   70 (82)
T cd05856           9 GSSVRLKCVASGNPRPDITWLK-DNKPLTPT--------EIGE---SRKKKWTLSLKNLKPEDSGKYTCHVSNR   70 (82)
T ss_pred             CCeEEEEEEeeEeCCCcEEEEE-CCcCCcCC--------ccce---ecCceEEEEEccCChhhCEEEEEEEEcC
Confidence            4578899999999999999999 44433211        0000   1112358999999999999999999765

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.23  E-value=1.4e-10  Score=64.55  Aligned_cols=57  Identities=12%  Similarity=0.254  Sum_probs=41.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|.+.+.|.|.|.|++ ++..+.        ...++..     ++..|.|.++  .|+|.|+|.+.|.
T Consensus         2 ~~v~L~C~a~G~P~P~v~W~k-~g~~l~--------~~~~~~~-----~~~~L~i~~~--~d~G~Y~C~A~N~   58 (69)
T cd05739           2 GSVNLTCVAVGAPMPYVKWMK-GGEELT--------KEDEMPV-----GRNVLELTNI--YESANYTCVAISS   58 (69)
T ss_pred             CeEEEEEEeeecCCCEEEEEE-CCEECC--------Cccceec-----CccEEEEecc--ccCeeEEEEEEeC
Confidence            468999999999999999999 444431        1122221     1227889987  4899999999776

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.23  E-value=2e-10  Score=68.13  Aligned_cols=78  Identities=21%  Similarity=0.297  Sum_probs=52.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.|.|.|++. +..+....   ....+++.... ......|.|.+++.+|+|.|.|.+.|. +.....
T Consensus        17 ~~v~l~C~~~g~p~p~v~W~~~-~~~~~~~~---~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s   91 (96)
T cd05732          17 EQITLTCEAEGDPIPEITWRRA-TRNFSEGD---KSLDGRIVVRG-HARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQS   91 (96)
T ss_pred             CcEEEEEEEeEcCCCcEEEEEC-CcccCCCC---ccccceEEEeC-CccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEE
Confidence            4688999999999999999994 43321100   01123444332 223458999999999999999999776 444444


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        92 ~~l~   95 (96)
T cd05732          92 MYLE   95 (96)
T ss_pred             EEEe
Confidence            4443

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.22  E-value=1.4e-10  Score=65.61  Aligned_cols=64  Identities=17%  Similarity=0.343  Sum_probs=44.0

Q ss_pred             eEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|...+ .|.|.+.|++ ++..+.....     ...+... .......|.|.+++.+|+|.|+|.+.|.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~~~~-----~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   65 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFK-DGKELNRKNK-----PRNIKIR-NKKKNSELQINKAKLADSGEYTCVVENI   65 (75)
T ss_pred             CEEEEEccCCCCCceEEEEc-CCeeccccCC-----cceEEEE-ecCceEEEEEccCCcccCeEEEEEEEEc
Confidence            468888888 8999999999 5555422110     0111121 1123458999999999999999999776

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.22  E-value=2.9e-10  Score=64.53  Aligned_cols=71  Identities=20%  Similarity=0.336  Sum_probs=48.4

Q ss_pred             EEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEEE
Q psy16425          6 LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGYL   84 (163)
Q Consensus         6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l   84 (163)
                      .|.|...+.|.|.|.|++ ++..+..      ....++.....+   ..|.|.++..+|+|.|+|.+.|. +.....+.|
T Consensus         2 ~L~C~v~g~P~p~v~W~k-~~~~l~~------~~~~~~~~~~~~---~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLK-NGMDITP------KLSKQLTLIANG---SELHISNVRYEDTGAYTCIAKNEAGVDEDISSL   71 (76)
T ss_pred             EeEeEeeecCCCEEEEEE-CCEECCC------CCCccEEEeCCC---CEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence            467888889999999999 5544321      111233333222   26999999999999999999776 444455555


Q ss_pred             EE
Q psy16425         85 EV   86 (163)
Q Consensus        85 ~v   86 (163)
                      .|
T Consensus        72 ~V   73 (76)
T cd05736          72 FV   73 (76)
T ss_pred             EE
Confidence            54

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.21  E-value=4.3e-10  Score=66.08  Aligned_cols=70  Identities=17%  Similarity=0.317  Sum_probs=49.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~   80 (163)
                      .++.|.|.+.+. .|.|.|++ ++..+.         ..++.+...   ..+|.|.+++.+|+|.|.|.+.|...  .+.
T Consensus        19 ~~v~l~C~a~g~-~p~i~W~k-ng~~l~---------~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~   84 (91)
T cd05740          19 QPVTLTCEAEGQ-ATYIWWVN-NGSLLV---------PPRLQLSND---NRTLTFNNVTRSDTGHYQCEASNEVSNMTSD   84 (91)
T ss_pred             CcEEEEEEeCCC-CCEEEEEE-CCEECC---------CCCEEEeCC---CCEEEECcCChhhCEEEEEEEEcCCCCEEee
Confidence            468899999999 99999999 444331         233443322   12799999999999999999987743  233


Q ss_pred             eEEEEE
Q psy16425         81 VGYLEV   86 (163)
Q Consensus        81 ~~~l~v   86 (163)
                      .+.|.|
T Consensus        85 ~~~L~V   90 (91)
T cd05740          85 PYILNV   90 (91)
T ss_pred             eEEEEe
Confidence            444443

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.20  E-value=5.1e-10  Score=66.04  Aligned_cols=61  Identities=18%  Similarity=0.251  Sum_probs=45.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~~   76 (163)
                      ..+.+.|.+.+.|.|.|+|++ ++..+.       ....++... .+    .|.|.++. .+|+|.|.|.+.|..
T Consensus        20 ~~v~l~C~a~G~P~P~i~W~k-~~~~i~-------~~~~~~~~~-~g----~L~I~~~~~~~D~G~Y~C~A~N~~   81 (93)
T cd05849          20 GKVSVNCRARANPFPIYKWRK-NNLDID-------LTNDRYSMV-GG----NLVINNPDKYKDAGRYVCIVSNIY   81 (93)
T ss_pred             CeEEEeCcCccCCCCEEEEEE-CCEEcc-------CCCCeEEEE-CC----EEEECcCCcCCCCEEEEEEEEeCc
Confidence            468999999999999999999 444431       112344333 22    79999985 699999999998763

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.20  E-value=2.9e-10  Score=65.07  Aligned_cols=58  Identities=17%  Similarity=0.329  Sum_probs=42.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.+.|...+. .+.|.|+| ++..+.        ...++.+...     +|.|.+++.+|+|.|+|.+.+.
T Consensus        10 ~~v~l~C~~~~~-~~~v~W~k-~g~~l~--------~~~~~~~~~~-----~L~I~~~~~~DsG~Y~C~a~n~   67 (79)
T cd04973          10 DLLQLRCRLRDD-VQSINWTK-DGVQLG--------ENNRTRITGE-----EVQIKDAVPRDSGLYACVTSSP   67 (79)
T ss_pred             CCEEEEEEecCC-CceEEEee-CCcCCC--------CCceEEEeCC-----EEEECCCChhhCEEEEEEEeCC
Confidence            357888887775 56899999 565552        2334444322     7999999999999999999665

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.19  E-value=4.8e-10  Score=65.13  Aligned_cols=61  Identities=30%  Similarity=0.446  Sum_probs=45.6

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|.. .+.|.+.|.|++ ++..+..       ...++.....+    +|.|.+++.+|+|.|+|.+.|.
T Consensus        12 ~~v~l~C~~~~g~p~p~i~W~k-~g~~~~~-------~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~N~   73 (86)
T cd05724          12 EMAVLECSPPRGHPEPTVSWRK-DGQPLNL-------DNERVRIVDDG----NLLIAEARKSDEGTYKCVATNM   73 (86)
T ss_pred             CCEEEEEECCCCCCCCEEEEEE-CCEECCC-------CCCCEEEccCC----EEEEeECCcccCEEEEEEEEec
Confidence            367888876 688999999999 5544321       12344444333    8999999999999999999876

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.18  E-value=4.6e-11  Score=69.84  Aligned_cols=65  Identities=28%  Similarity=0.314  Sum_probs=50.6

Q ss_pred             CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      |.+...+  ....+.+|+.+.|.|.+.|+|.|.++|++++..+.........++.|.|.+++.+|.+
T Consensus         2 p~i~~~~--~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   66 (88)
T cd05851           2 ADINVKF--KDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEG   66 (88)
T ss_pred             CceEEcc--ccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCE
Confidence            4444433  3567889999999999999999999999998776443333345678999999999876

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.17  E-value=2.8e-10  Score=67.25  Aligned_cols=73  Identities=15%  Similarity=0.171  Sum_probs=47.6

Q ss_pred             ceeEEEeeeec-----cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-C
Q psy16425          3 ARMLIEIGEML-----MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-P   76 (163)
Q Consensus         3 ~~~~~~~~~~~-----~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~   76 (163)
                      ..+.|.|...+     .|.+.|.|||.+ ..+....    ....|+... .    ..|.|.++..+|+|.|+|.+.|. +
T Consensus        15 ~~~~L~C~~~g~~~~~~p~~~v~Wyk~~-~~~~~~~----~~~~r~~~~-~----~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756          15 EPVVIKCPLFYSYIAQSPGLNLTWYKSD-GKTPIPT----EERSRMHQQ-K----DLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             CCeEEECCCCCcccccCCCceEEEEEcC-CCCcccc----cccceeeec-C----CeEEEccCCcccCeEEEEEEcCCCc
Confidence            35788888887     688999999954 3321100    112333322 1    28999999999999999999765 3


Q ss_pred             CceEeEEEE
Q psy16425         77 MKSQVGYLE   85 (163)
Q Consensus        77 ~~~~~~~l~   85 (163)
                      .....+.|.
T Consensus        85 ~~~~~~~L~   93 (94)
T cd05756          85 CMKVSISLT   93 (94)
T ss_pred             cEEEEEEEE
Confidence            444444443

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.17  E-value=7.3e-10  Score=63.07  Aligned_cols=63  Identities=14%  Similarity=0.259  Sum_probs=42.0

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCC----CCCeEEEEEEEeCCC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRE----SDRGWYMCQVNTDPM   77 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~~~~~~~   77 (163)
                      +.|.|.+.+.|.|.|+|++ ++..+..      ....++.....   +.+|.|..+..    .|+|.|+|.+.|...
T Consensus         1 ~~l~C~a~G~P~P~i~W~k-~g~~l~~------~~~~~~~~~~~---~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G   67 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTR-NGTHFDI------DKDPKVTMKPN---TGTLVINIMNGEKAEAYEGVYQCTARNERG   67 (77)
T ss_pred             CEEEeeCcccCCCeEEEEE-CCeECCC------cCCCCEEEeCC---CceEEEeccccCCCCCCCEEEEEEEEcCCC
Confidence            4688999999999999999 5544311      11223333221   22777877764    378999999987643

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.16  E-value=8.5e-10  Score=65.25  Aligned_cols=61  Identities=21%  Similarity=0.306  Sum_probs=44.6

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~~   76 (163)
                      ++.+.|...+.|.|.|.|++ ++..+...      ...++... .+    +|.|.++. .+|+|.|.|.+.|..
T Consensus        21 ~v~l~C~~~G~P~P~i~W~k-~g~~l~~~------~~~~~~~~-~g----~L~i~~~~~~~D~G~Y~C~A~N~~   82 (94)
T cd05848          21 KVILNCEARGNPVPTYRWLR-NGTEIDTE------SDYRYSLI-DG----NLIISNPSEVKDSGRYQCLATNSI   82 (94)
T ss_pred             EEEEEEEeeecCCCEEEEEE-CCeECccC------CCceEEee-CC----eEEEccCCccCcCEEEEEEEEcCC
Confidence            68999999999999999999 55554211      11233322 22    78998885 699999999998763

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.15  E-value=1e-09  Score=62.48  Aligned_cols=64  Identities=19%  Similarity=0.226  Sum_probs=42.9

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC---C-CCCeEEEEEEEeCCCc
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR---E-SDRGWYMCQVNTDPMK   78 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~---~-~d~G~Y~C~~~~~~~~   78 (163)
                      +.|.|...+.|.|.|+|++ ++..+..      ....++.....   +.+|.|.++.   + .|+|.|.|.+.|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k-~g~~~~~------~~~~~~~~~~~---~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~   68 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTR-NGKFFNV------AKDPRVSMRRR---SGTLVIDFSGGGRPEDYEGEYQCFARNNLGT   68 (77)
T ss_pred             CEEEEeccccCCCEEEEEE-CCEEccC------cCCCcEEEeCC---CceEEEeccCCCCCCCCCEEEEEEEEeccce
Confidence            4688999999999999999 5543311      12334433221   2378888764   2 4699999999887443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.14  E-value=6.5e-10  Score=63.28  Aligned_cols=63  Identities=17%  Similarity=0.263  Sum_probs=42.8

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCC----CCCeEEEEEEEeCCC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRE----SDRGWYMCQVNTDPM   77 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~~~~~~~   77 (163)
                      +.|.|.+.+.|.|.|+|++ ++..+..      ....++.....   ...|.|.++..    +|+|.|.|.+.|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k-~g~~l~~------~~~~~~~~~~~---~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G   67 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTR-NGTHFDP------EKDPRVTMKPD---SGTLVIDNMNGGRAEDYEGEYQCYASNELG   67 (77)
T ss_pred             CEEEeeCcccCCCeEEEEE-CCeECCC------CCCCCEEEeCC---CCEEEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence            4678999999999999999 5544321      11233333221   22788888754    789999999987743

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.13  E-value=8.3e-10  Score=63.91  Aligned_cols=79  Identities=10%  Similarity=0.147  Sum_probs=48.9

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCce
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~   79 (163)
                      ..+.|.|...+.  |.+.+.|++.+.........     ..+............|.|.+++.+|+|.|+|.+.+. +...
T Consensus         2 e~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~   76 (84)
T cd05742           2 ETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSM-----VTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK   76 (84)
T ss_pred             CeEEEEEEEEeCCCccEEEEEecCCcccCCceEe-----ecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE
Confidence            467889999888  88999999744322110000     001111111112348999999999999999999776 4445


Q ss_pred             EeEEEEE
Q psy16425         80 QVGYLEV   86 (163)
Q Consensus        80 ~~~~l~v   86 (163)
                      ..+.+.|
T Consensus        77 ~s~~v~v   83 (84)
T cd05742          77 ESTKVNI   83 (84)
T ss_pred             EEEEEEE
Confidence            5555544

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.13  E-value=2.1e-09  Score=63.55  Aligned_cols=62  Identities=16%  Similarity=0.211  Sum_probs=45.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~~   76 (163)
                      .++.|.|.+.+.|.+.|+|++ ++..+..      ....++.+.. +    +|.|.++. ..|+|.|.|.+.|..
T Consensus        20 ~~v~l~C~a~g~P~p~i~W~~-~g~~l~~------~~~~~~~~~~-g----~L~I~~~~~~~D~G~Y~C~A~N~~   82 (94)
T cd05850          20 EKVTLGCRARASPPATYRWKM-NGTEIKF------APESRYTLVA-G----NLVINNPQKARDAGSYQCLAINRC   82 (94)
T ss_pred             CeEEEEeEceeCCCCEEEEEE-CCEECcc------CCCceEEEEC-C----eEEEccCCccCcCEEEEEEEEcCc
Confidence            368999999999999999999 5554421      1123343332 2    78898765 699999999998763

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.11  E-value=1.3e-09  Score=61.87  Aligned_cols=65  Identities=17%  Similarity=0.376  Sum_probs=42.9

Q ss_pred             eEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|.+. +.|.+.+.||+ ++..+....    ....++.... .....+|.|.+++.+|+|.|+|.+.|.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~~~~----~~~~~~~~~~-~~~~~~L~I~~~~~~DsG~Y~C~a~N~   66 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFK-NGKEIGAKN----KPDNKIKIRK-KKKSSELQISKASLADNGEYKCMVSSK   66 (76)
T ss_pred             CEEEEecccCCCCCceEEEE-CCcccccCC----CCCceEEEEe-CCcEEEEEECcCCcccCEEEEEEEEeC
Confidence            35778765 36888999999 555542211    0112233222 223458999999999999999999776

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.08  E-value=2.6e-09  Score=63.27  Aligned_cols=62  Identities=18%  Similarity=0.356  Sum_probs=43.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEccc-----CCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREV-----RESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C~~~~~   75 (163)
                      .++.+.|...+.|.|.|.|+| ++..+...      ...+......+    +|.|.++     +..|+|.|.|.+.|.
T Consensus        15 ~~v~l~C~v~g~P~p~i~W~k-~g~~l~~~------~~~~~~~~~~~----~l~i~~v~~~~~~~~D~G~Y~C~a~N~   81 (95)
T cd05722          15 GPVVLNCSAEGEPPPKIEWKK-DGVLLNLV------SDERRQQLPNG----SLLITSVVHSKHNKPDEGFYQCVAQND   81 (95)
T ss_pred             CCEEEeeecccCCCCEEEEEE-CCeECccc------cCcceEEccCC----eEEEeeeeccCCCCCcCEEEEEEEECC
Confidence            468899999999999999999 55544211      11223333332    5666666     689999999999776

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.08  E-value=7e-09  Score=60.02  Aligned_cols=67  Identities=13%  Similarity=0.114  Sum_probs=43.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.|.+.+.|++.++........     ..+.... .......|.|.+++.+|+|.|.|.+.+.
T Consensus         2 e~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-----~~~~~~~-~~~~~s~L~I~~~~~~DsG~Y~C~a~n~   68 (84)
T cd05861           2 ETITVNCIVQGNEVVDFSWTYPGKDIGKGIPE-----VEEVKVP-ATTLRSTLTFPHATVEDSGTYECAAHES   68 (84)
T ss_pred             CcEEEEEEEECCCccEEEEEECCccCCCCceE-----EEEEecC-CcEEEEEEEECCCCcCCCEEEEEEEEEC
Confidence            46788999999999999999844321100000     0000000 0112348999999999999999999765

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.07  E-value=5.8e-09  Score=62.74  Aligned_cols=81  Identities=19%  Similarity=0.223  Sum_probs=55.0

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCC----ceEEee--e----eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDT----QTILTI--Q----THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~----~~~~~~--~----~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      ..+++|.|...+.....+.|||...    ..+...  .    .......+|..+..++    +|.|.+++.+|+|.|+|.
T Consensus        13 G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng----SL~I~~v~~~D~G~Y~~~   88 (105)
T cd05774          13 GENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG----SLLIQNVTQKDTGFYTLQ   88 (105)
T ss_pred             CCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC----cEEEecCCcccCEEEEEE
Confidence            3578999888777777999999421    122111  1    1112346777777766    999999999999999999


Q ss_pred             EEeCCCceEeEEEEE
Q psy16425         72 VNTDPMKSQVGYLEV   86 (163)
Q Consensus        72 ~~~~~~~~~~~~l~v   86 (163)
                      +.+.......+.+.+
T Consensus        89 v~~~~~~~~~~~v~l  103 (105)
T cd05774          89 TITTNFQVEQATVHL  103 (105)
T ss_pred             EEeCCccEEEEEEEE
Confidence            976654455555544

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.07  E-value=1.6e-09  Score=63.40  Aligned_cols=74  Identities=23%  Similarity=0.323  Sum_probs=48.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      .++.|.|...+ |.+.+.|+++ +..+....    ....++.....     .|.|.+++++|+|.|.|.+.+........
T Consensus        12 ~~v~L~C~~~~-p~~~i~W~k~-~~~~~~~~----~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979          12 NSVFLECSPKS-NLASVVWLFQ-GGPLQRKE----EPEERLLVTED-----GLLIRSVSPADAGVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             CcEEEEEeCCC-CCceEEEEEC-Cccccccc----CcCceEEEcCC-----CEEEccCCHHHCEEEEEEEecCccceeEe
Confidence            36888998876 8889999995 43331110    01233333322     58999999999999999997665444444


Q ss_pred             EEEEE
Q psy16425         83 YLEVV   87 (163)
Q Consensus        83 ~l~v~   87 (163)
                      .+.+.
T Consensus        81 ~~~l~   85 (89)
T cd04979          81 TYSLN   85 (89)
T ss_pred             EEEEE
Confidence            44443

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.06  E-value=4.3e-09  Score=60.79  Aligned_cols=64  Identities=28%  Similarity=0.502  Sum_probs=44.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.+.|...+.|.+.|.|++ ++..+..        .............+.|.|.+++.+|+|.|.|.+.+.
T Consensus        10 ~~~~l~C~~~~~p~~~v~W~k-~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~   73 (85)
T cd05729          10 STVRLKCPASGNPRPTITWLK-DGKPFKK--------EHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENK   73 (85)
T ss_pred             CcEEEEEEcCCCCCCeEEEEE-CCEECcc--------cCceeEEEccCcEEEEEEeECCcccCEEEEEEEEEC
Confidence            468889998889999999999 4443321        111111111123457999999999999999999765

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=99.04  E-value=1e-08  Score=61.00  Aligned_cols=78  Identities=18%  Similarity=0.310  Sum_probs=49.2

Q ss_pred             eeEEEeeeeccC---CCEEEEEEcCCc---eEEeee---eeE--EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          4 RMLIEIGEMLMA---ESTVAWLRVDTQ---TILTIQ---THV--ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         4 ~~~~~~~~~~~~---~~~i~W~k~~~~---~~~~~~---~~~--~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ++.|.|.....+   ...|.|+|....   .+....   +..  ....+|+.+.....++++|.|.+++.+|+|.|.|.+
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v   81 (98)
T cd05718           2 SVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICEF   81 (98)
T ss_pred             CEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEEE
Confidence            567888765543   457999996532   111111   111  122456666654446789999999999999999999


Q ss_pred             EeCCCceEe
Q psy16425         73 NTDPMKSQV   81 (163)
Q Consensus        73 ~~~~~~~~~   81 (163)
                      ...+.....
T Consensus        82 ~~~~~g~~~   90 (98)
T cd05718          82 ATFPQGNRQ   90 (98)
T ss_pred             EeCCCCcEE
Confidence            654433333

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.04  E-value=1.1e-09  Score=65.25  Aligned_cols=59  Identities=19%  Similarity=0.271  Sum_probs=49.2

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      ....+..|+.+.|.|.+.|.|+|.+.|++++..+....+...    ....|+|.++.++|.+.
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~   70 (98)
T cd05762           8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGC   70 (98)
T ss_pred             cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEE
Confidence            356788999999999999999999999999998865544332    35789999999999874

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=99.04  E-value=8.6e-09  Score=61.64  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=51.8

Q ss_pred             eeEEEeeeeccC---CCEEEEEEcCCc----eEE--ee--eeeEE-ecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEMLMA---ESTVAWLRVDTQ----TIL--TI--QTHVI-TKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~~~---~~~i~W~k~~~~----~~~--~~--~~~~~-~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      ++.|.|.-....   ...|.|++....    .+.  ..  +...+ ...+|..+... ...+.+|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            577788765444   558999995322    111  11  11111 23467777654 3467899999999999999999


Q ss_pred             EEEeCCCceEeEEEE
Q psy16425         71 QVNTDPMKSQVGYLE   85 (163)
Q Consensus        71 ~~~~~~~~~~~~~l~   85 (163)
                      .+.+.+.+...+.+.
T Consensus        82 ~v~~~p~g~~~~~~~   96 (100)
T cd05888          82 RVITFPAGNFEAELV   96 (100)
T ss_pred             EEEeCCCCCeeeEEE
Confidence            997754443344333

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.03  E-value=5e-10  Score=63.26  Aligned_cols=52  Identities=23%  Similarity=0.457  Sum_probs=43.4

Q ss_pred             CCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425        105 EGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       105 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      +|+.+.|.|.+.|.|.|.+.|++++..+....... ...+.|+|.+++.+|.+
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G   53 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQG   53 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCE
Confidence            58999999999999999999999998875543332 25578999999999976

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.02  E-value=7.2e-09  Score=61.68  Aligned_cols=79  Identities=22%  Similarity=0.263  Sum_probs=45.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEE--cccCCCCCeEEEEEEEeCCC--c
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHI--REVRESDRGWYMCQVNTDPM--K   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i--~~v~~~d~G~Y~C~~~~~~~--~   78 (163)
                      .++.|.|...+.|.|.|.|++ ++..+....   .....+......+ ....+.+  ..++.+|+|.|+|.+.|...  .
T Consensus        17 ~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~---~~~~~~~~~~~~~-~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~   91 (100)
T cd07693          17 DPATLNCKAEGRPTPTIQWLK-NGQPLETDK---DDPRSHRIVLPSG-SLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV   91 (100)
T ss_pred             CeEEEEeeCCcCCCCEEEEEE-CCEECcccc---CCCCcceEEecCC-cEEEEEeeccCCCcCcCEEEEEEEEcccccee
Confidence            468899999999999999999 555442210   0011111122222 1112222  33479999999999987733  3


Q ss_pred             eEeEEEEE
Q psy16425         79 SQVGYLEV   86 (163)
Q Consensus        79 ~~~~~l~v   86 (163)
                      +..+.|.|
T Consensus        92 s~~~~l~v   99 (100)
T cd07693          92 SRNASLEV   99 (100)
T ss_pred             cceEEEEe
Confidence            34444443

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=99.01  E-value=8e-09  Score=60.72  Aligned_cols=80  Identities=13%  Similarity=0.199  Sum_probs=53.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEe-e------eeeE--EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILT-I------QTHV--ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~-~------~~~~--~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .+|.|.|...+.....|.|++........ .      ....  ....+|+.+..+    ++|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~----~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           2 ESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN----GSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC----ceEEEccCCchhcEEEEEEEE
Confidence            57889998887778899999954322111 0      0011  123456666554    499999999999999999996


Q ss_pred             eCCCceEeEEEEE
Q psy16425         74 TDPMKSQVGYLEV   86 (163)
Q Consensus        74 ~~~~~~~~~~l~v   86 (163)
                      ..........+.+
T Consensus        78 ~~~~~~~~~~~~l   90 (92)
T cd05741          78 STNGVTENAKFFL   90 (92)
T ss_pred             cCCCcEEEEEEEE
Confidence            5554444444443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.00  E-value=1.6e-09  Score=62.89  Aligned_cols=57  Identities=25%  Similarity=0.414  Sum_probs=49.4

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...+..|+++.|.|.+.|.|.|.+.|++++.++....+....++.|.|.++..+|.+
T Consensus         8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G   64 (85)
T cd05728           8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSG   64 (85)
T ss_pred             ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCE
Confidence            567889999999999999999999999999987655555567789999999999876

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=99.00  E-value=2.3e-08  Score=60.82  Aligned_cols=87  Identities=21%  Similarity=0.318  Sum_probs=55.4

Q ss_pred             CcceeEEEeeeeccC----------CCEEEEEEcC-CceE--E-eeeeeE---EecCCeEEEEeC--CCceEEEEEcccC
Q psy16425          1 MAARMLIEIGEMLMA----------ESTVAWLRVD-TQTI--L-TIQTHV---ITKNHRIGVTHS--ETKAWYLHIREVR   61 (163)
Q Consensus         1 ~~~~~~~~~~~~~~~----------~~~i~W~k~~-~~~~--~-~~~~~~---~~~~~r~~~~~~--~~~~~~L~i~~v~   61 (163)
                      |..++.|.|.....+          ...|.|++.. +...  . ..+...   ....+|+.+...  ..++.+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            467899999876543          3779999963 2221  1 111111   123467776542  3467899999999


Q ss_pred             CCCCeEEEEEEEeC-CCceEeEEEEEE
Q psy16425         62 ESDRGWYMCQVNTD-PMKSQVGYLEVV   87 (163)
Q Consensus        62 ~~d~G~Y~C~~~~~-~~~~~~~~l~v~   87 (163)
                      .+|+|.|.|.+... ......+.|.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            99999999999654 334444555553

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.99  E-value=1.8e-08  Score=60.16  Aligned_cols=84  Identities=18%  Similarity=0.225  Sum_probs=51.2

Q ss_pred             ceeEEEeeeecc---CCCEEEEEEcCCceEE-ee-eeeE------EecCCeEEEEeC--CCceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLM---AESTVAWLRVDTQTIL-TI-QTHV------ITKNHRIGVTHS--ETKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~---~~~~i~W~k~~~~~~~-~~-~~~~------~~~~~r~~~~~~--~~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.   ....|.|++....... .. .+..      ....+|+.+...  ..++.+|.|.+++.+|+|.|+
T Consensus         2 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   81 (100)
T cd05713           2 EDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYT   81 (100)
T ss_pred             CcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEEE
Confidence            467888876532   2347899996432221 11 1111      112357766543  246789999999999999999


Q ss_pred             EEEEeCCCceEeEEEEEE
Q psy16425         70 CQVNTDPMKSQVGYLEVV   87 (163)
Q Consensus        70 C~~~~~~~~~~~~~l~v~   87 (163)
                      |.+.+.+.. ....+.+.
T Consensus        82 C~v~~~~~~-~~~~i~l~   98 (100)
T cd05713          82 CFFQSDGFY-EEATVELK   98 (100)
T ss_pred             EEEecCCcE-EEEEEEEE
Confidence            999765433 44444443

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.99  E-value=3e-08  Score=60.34  Aligned_cols=86  Identities=19%  Similarity=0.259  Sum_probs=54.3

Q ss_pred             CcceeEEEeeeeccC------------CCEEEEEEcCC--c-eEE-eeeeeE---EecCCeEEEEeC--CCceEEEEEcc
Q psy16425          1 MAARMLIEIGEMLMA------------ESTVAWLRVDT--Q-TIL-TIQTHV---ITKNHRIGVTHS--ETKAWYLHIRE   59 (163)
Q Consensus         1 ~~~~~~~~~~~~~~~------------~~~i~W~k~~~--~-~~~-~~~~~~---~~~~~r~~~~~~--~~~~~~L~i~~   59 (163)
                      +..++.|.|......            .+.|.|+|...  . .+. +.....   ....+|+.+...  ..++.+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            356788888765432            46999998631  1 222 222211   123458877652  34678999999


Q ss_pred             cCCCCCeEEEEEEEeC-CCceEeEEEEE
Q psy16425         60 VRESDRGWYMCQVNTD-PMKSQVGYLEV   86 (163)
Q Consensus        60 v~~~d~G~Y~C~~~~~-~~~~~~~~l~v   86 (163)
                      ++.+|+|.|.|.+... ........|.|
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v  108 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV  108 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEE
Confidence            9999999999999643 33344444444

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.99  E-value=1.1e-08  Score=60.98  Aligned_cols=74  Identities=15%  Similarity=0.129  Sum_probs=49.7

Q ss_pred             ceeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCC---CceEEEEEcccCCCC-CeEEEEEEEeC-C
Q psy16425          3 ARMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSE---TKAWYLHIREVRESD-RGWYMCQVNTD-P   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~i~~v~~~d-~G~Y~C~~~~~-~   76 (163)
                      ..+.|.|...+.|.| .|.|++ ++..+...      ...|+.+....   ....+|.|.+++.+| .|.|.|.+.|. +
T Consensus        17 ~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~~------~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G   89 (98)
T cd05758          17 DKGRVECFIFSTPPPDRIVWTW-KENELESG------SSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG   89 (98)
T ss_pred             CcEEEEEEEcccCCCCEeEEEE-CCEEccCC------CCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence            468899999999999 699999 55444211      12345444321   123479999999955 89999999776 4


Q ss_pred             CceEeEE
Q psy16425         77 MKSQVGY   83 (163)
Q Consensus        77 ~~~~~~~   83 (163)
                      .....+.
T Consensus        90 ~~~~~~~   96 (98)
T cd05758          90 SGTAIIS   96 (98)
T ss_pred             cccEEEE
Confidence            4444443

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.98  E-value=2.1e-08  Score=59.20  Aligned_cols=83  Identities=14%  Similarity=0.180  Sum_probs=53.6

Q ss_pred             eeEEEeeee-ccCCCEEEEEEcCCc---eEEeee---eeE--EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          4 RMLIEIGEM-LMAESTVAWLRVDTQ---TILTIQ---THV--ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         4 ~~~~~~~~~-~~~~~~i~W~k~~~~---~~~~~~---~~~--~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ++.|.|.-. ......|.|.|..+.   .+....   +..  ....+|+.+.....++.+|.|.+++.+|+|.|.|.+.+
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence            456666654 234468999985431   222111   111  13456887765556788999999999999999999987


Q ss_pred             CCCceEeEEEEE
Q psy16425         75 DPMKSQVGYLEV   86 (163)
Q Consensus        75 ~~~~~~~~~l~v   86 (163)
                      .+.++..+.+.+
T Consensus        82 fP~G~~~~~~~l   93 (96)
T cd05887          82 FPLGNTQSSTTV   93 (96)
T ss_pred             CCCCCeeEEEEE
Confidence            766655554443

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.98  E-value=2e-08  Score=60.65  Aligned_cols=85  Identities=19%  Similarity=0.266  Sum_probs=52.7

Q ss_pred             cceeEEEeeeecc------CCCEEEEEEcC--C---ceEEee-eeeE---EecCCeEEEEeCCCceEEEEEcccCCCCCe
Q psy16425          2 AARMLIEIGEMLM------AESTVAWLRVD--T---QTILTI-QTHV---ITKNHRIGVTHSETKAWYLHIREVRESDRG   66 (163)
Q Consensus         2 ~~~~~~~~~~~~~------~~~~i~W~k~~--~---~~~~~~-~~~~---~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G   66 (163)
                      ..++.|.|.....      ....|.|++..  .   ..+... +...   .....|+.+.....++.+|.|.+++.+|+|
T Consensus         2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G   81 (106)
T cd05714           2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG   81 (106)
T ss_pred             CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence            4578899986654      35799999962  1   122221 1111   122334444333457889999999999999


Q ss_pred             EEEEEEEeC-CCceEeEEEEE
Q psy16425         67 WYMCQVNTD-PMKSQVGYLEV   86 (163)
Q Consensus        67 ~Y~C~~~~~-~~~~~~~~l~v   86 (163)
                      .|.|.+.+. ......+.|.|
T Consensus        82 ~Y~C~v~~~~~~~~~~v~L~V  102 (106)
T cd05714          82 RYRCEVIDGIEDEQDTVELEV  102 (106)
T ss_pred             EEEEEEEcCCCceEEEEEEEE
Confidence            999999654 23344444444

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.98  E-value=1.4e-09  Score=63.56  Aligned_cols=57  Identities=28%  Similarity=0.461  Sum_probs=47.1

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+.........++.|.|.+++.+|.+
T Consensus        10 ~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   66 (88)
T cd04968          10 DTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEG   66 (88)
T ss_pred             ceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCE
Confidence            556788999999999999999999999988766444333346789999999999875

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.98  E-value=2e-08  Score=60.68  Aligned_cols=84  Identities=18%  Similarity=0.223  Sum_probs=52.5

Q ss_pred             ceeEEEeeeecc------CCCEEEEEEcCCc-----eEEeeeeeE----EecCCeEEEEeCCCceEEEEEcccCCCCCeE
Q psy16425          3 ARMLIEIGEMLM------AESTVAWLRVDTQ-----TILTIQTHV----ITKNHRIGVTHSETKAWYLHIREVRESDRGW   67 (163)
Q Consensus         3 ~~~~~~~~~~~~------~~~~i~W~k~~~~-----~~~~~~~~~----~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~   67 (163)
                      .++.|.|.....      ....|.|++....     .++......    ....+|+.+.....++.+|.|.+++.+|+|.
T Consensus         3 ~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG~   82 (106)
T cd05877           3 GNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDYGR   82 (106)
T ss_pred             CcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHCEE
Confidence            478888976554      3467999996421     111111111    1234677775544567899999999999999


Q ss_pred             EEEEEEeC-CCceEeEEEEE
Q psy16425         68 YMCQVNTD-PMKSQVGYLEV   86 (163)
Q Consensus        68 Y~C~~~~~-~~~~~~~~l~v   86 (163)
                      |.|.+.+. +.....+.|.|
T Consensus        83 Y~C~v~~~~~~~~~~~~l~v  102 (106)
T cd05877          83 YRCEVIDGLEDESVVVALRL  102 (106)
T ss_pred             EEEEEEecccceEEEEEEEE
Confidence            99999553 33333344443

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.97  E-value=3.1e-09  Score=62.60  Aligned_cols=58  Identities=19%  Similarity=0.421  Sum_probs=47.2

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-----EeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++.++........     ....|.|.+++.+|++.
T Consensus        10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   72 (92)
T cd05737          10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGK   72 (92)
T ss_pred             eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEE
Confidence            56788999999999999999999999999988765543332     12479999999999864

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.96  E-value=1.1e-08  Score=60.10  Aligned_cols=60  Identities=18%  Similarity=0.263  Sum_probs=43.3

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~   75 (163)
                      .+.|.|...+.|.+.|+|++ ++..+..      ....++.... +    .|.|.++. .+|+|.|+|.+.|.
T Consensus        21 ~~~l~C~~~g~p~p~i~W~k-~~~~l~~------~~~~~~~~~~-~----~L~i~~~~~~~d~G~Y~C~a~N~   81 (91)
T cd04967          21 KVSLNCRARGSPPPTYRWLM-NGTEIDD------EPDSRYSLVG-G----NLVISNPSKAKDAGRYQCLASNI   81 (91)
T ss_pred             EEEEEEeeeEcCCCEEEEEE-CCEECCC------CCCCCEEEEC-C----EEEEecCCccCCCEEEEEEEEcC
Confidence            58899999999999999999 5554421      1122333322 2    78898886 59999999999776

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.96  E-value=1.4e-08  Score=58.91  Aligned_cols=59  Identities=17%  Similarity=0.222  Sum_probs=42.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|... .+.+.|.|++ ++..+...       ..|+.+.. +    .|.|.+++.+|+|.|+|.+...
T Consensus        12 ~~v~L~C~~~-~~~~~i~W~~-ng~~i~~~-------~~r~~~~~-~----~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873          12 NNAELKCSPK-SNLARVVWKF-DGKVLTPE-------SAKYLLYR-D----GLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CCEEEEEECC-CCCCeEEEEE-CCEECCCC-------CceEEEEC-C----cEEEeCCCHHHCEEEEEEEEec
Confidence            3577888765 4678999999 66655221       13444433 2    6999999999999999999655

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.95  E-value=1.6e-08  Score=59.39  Aligned_cols=64  Identities=20%  Similarity=0.290  Sum_probs=42.0

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .+.|.|.. ..|.+.|.||+.++.....   .......|+....     .+|.|.+++++|+|.|+|.+.+..
T Consensus        13 ~v~L~C~~-~~p~p~v~Wykq~~g~~~~---~~~~~~~r~~~~~-----~~L~I~~~~~~DsG~Y~C~a~~~~   76 (91)
T cd05871          13 STFLECLP-KSPQASVKWLFQRGGDQRK---EEVKTEERLIHTE-----RGLLLRSLQRSDAGVYTCTAVEHS   76 (91)
T ss_pred             cEEEEEEC-CCCCceEEEEEECCCCCcc---ccccccccEEEec-----CeEEEeeCChhHCEEEEEEEEccC
Confidence            57788875 5888999999853211100   0011223444332     269999999999999999996543

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.95  E-value=1.4e-09  Score=61.19  Aligned_cols=51  Identities=20%  Similarity=0.374  Sum_probs=43.1

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~  156 (163)
                      |+++.|.|.+.|.|.|.+.|++++..+....+... .++.|.|.+++.+|.+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G   52 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEG   52 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCE
Confidence            67899999999999999999999987765555443 5578999999999976

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.95  E-value=1.3e-08  Score=60.46  Aligned_cols=83  Identities=14%  Similarity=0.231  Sum_probs=51.8

Q ss_pred             cceeEEEeeeec-cCCCEEEEEEcCCceEEeee----ee--EEe--cCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          2 AARMLIEIGEML-MAESTVAWLRVDTQTILTIQ----TH--VIT--KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~----~~--~~~--~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ...|.|.|.... .....|.|++.....+....    ..  .+.  ..+|+.+.   ..+++|.|.+++.+|+|.|.|.+
T Consensus         4 G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~---~~~~sL~I~~~~~~DsG~Y~c~v   80 (97)
T cd05775           4 GGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFS---QNDYSLQISNLKMEDAGSYRAEI   80 (97)
T ss_pred             CCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEec---CCceeEEECCCchHHCEEEEEEE
Confidence            457889997765 66678999995322222211    01  111  12345442   23579999999999999999999


Q ss_pred             EeCCCceEeEEEEEE
Q psy16425         73 NTDPMKSQVGYLEVV   87 (163)
Q Consensus        73 ~~~~~~~~~~~l~v~   87 (163)
                      ...........+.++
T Consensus        81 ~~~~~~~~~~~f~L~   95 (97)
T cd05775          81 NTKNGVTITKEFTLH   95 (97)
T ss_pred             EcCCCCeEEEEEEEE
Confidence            765544444444443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.94  E-value=4.2e-08  Score=58.38  Aligned_cols=80  Identities=13%  Similarity=0.261  Sum_probs=50.9

Q ss_pred             eeEEEeeeecc-C---CCEEEEEEcCC---ceEEeeee-----eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425          4 RMLIEIGEMLM-A---ESTVAWLRVDT---QTILTIQT-----HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         4 ~~~~~~~~~~~-~---~~~i~W~k~~~---~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      ++.|.|.-... |   ...|.|.+..+   ..+.....     ......+|+.+.....++.+|.|.+++.+|+|.|.|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            56677765422 2   23799998521   12221221     1113457888776666788999999999999999999


Q ss_pred             EEeCCCceEeEE
Q psy16425         72 VNTDPMKSQVGY   83 (163)
Q Consensus        72 ~~~~~~~~~~~~   83 (163)
                      +.+.+..+....
T Consensus        82 v~t~P~g~~~~~   93 (99)
T cd05886          82 FATFPTGNRESQ   93 (99)
T ss_pred             EEeCCCCCeEEE
Confidence            988644443333

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.94  E-value=4.7e-09  Score=61.74  Aligned_cols=61  Identities=18%  Similarity=0.349  Sum_probs=47.5

Q ss_pred             eeEEEee-eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCe-EEEEEEEeCC
Q psy16425          4 RMLIEIG-EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRG-WYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~-~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~~~~   76 (163)
                      .++|.|. ..+.|.|.|.|++.+...+        ..+.|+.+...+    .|.|.+|+.+|+| .|.|.+.+..
T Consensus        20 ~~~L~C~pP~g~P~P~i~W~~~~~~~i--------~~~~Ri~~~~~G----nL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          20 SVVLPCNPPKSAVPLRIYWMNSDLLHI--------TQDERVSMGQNG----NLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             CEEEEecCCCCCCCCEEEEECCCCccc--------cccccEEECCCc----eEEEEEEehhhCCCCeEEEEEccc
Confidence            5788896 7999999999997432222        235677766655    8999999999999 7999997664

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.93  E-value=5.1e-09  Score=61.66  Aligned_cols=67  Identities=27%  Similarity=0.555  Sum_probs=51.9

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      +|.+...+  ....+.+|+.+.|.|.+.|+|.|.+.|++++..+....+...    ..+.|.|.++..+|.+.
T Consensus         3 ~~~~~~~p--~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   73 (92)
T cd05747           3 PATILTKP--RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGN   73 (92)
T ss_pred             CCcccccC--ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEe
Confidence            45565544  367889999999999999999999999999987754433332    23589999999988764

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.93  E-value=4e-09  Score=62.44  Aligned_cols=58  Identities=26%  Similarity=0.436  Sum_probs=45.8

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec-CCce--EEeceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ-GNGQ--EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~--~~~~~l~i~~v~~~~~~  156 (163)
                      ....+..|+++.|.|.+.|.|.|.+.|++++..+... ....  ..+..|+|.+++.+|.+
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   71 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEA   71 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCE
Confidence            3456889999999999999999999999999877544 1111  14467999999998865

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.92  E-value=5.5e-08  Score=57.48  Aligned_cols=83  Identities=24%  Similarity=0.263  Sum_probs=55.0

Q ss_pred             eEEEeeee-ccCCCEEEEEEcCC---ceEEeee---eeEE--ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEM-LMAESTVAWLRVDT---QTILTIQ---THVI--TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~-~~~~~~i~W~k~~~---~~~~~~~---~~~~--~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|.-. .....+|.|.|..+   ..+....   +..+  ...+|+.+......+.+|.|.+++.+|+|.|+|.+.+.
T Consensus         3 vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~   82 (96)
T cd05889           3 MKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTY   82 (96)
T ss_pred             EEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeC
Confidence            44555443 23467888998643   1232221   1112  33578887765556789999999999999999999888


Q ss_pred             CCceEeEEEEEE
Q psy16425         76 PMKSQVGYLEVV   87 (163)
Q Consensus        76 ~~~~~~~~l~v~   87 (163)
                      +.+.....+.|.
T Consensus        83 P~g~~~~~i~~~   94 (96)
T cd05889          83 PQGSWEKVIEVV   94 (96)
T ss_pred             CCCCeEEEEEEE
Confidence            777766666553

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.92  E-value=3e-08  Score=58.93  Aligned_cols=78  Identities=23%  Similarity=0.267  Sum_probs=48.5

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcCCc---eEEee---eeeEE--ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVDTQ---TILTI---QTHVI--TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~~~---~~~~~---~~~~~--~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .++.|.|.-.... ...|.|++..+.   .+...   .+...  ...+|..+.....++.+|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~   81 (97)
T cd05846           2 GNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIFN   81 (97)
T ss_pred             CcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEEE
Confidence            4678888643332 247999985432   11111   11111  223455555444567899999999999999999997


Q ss_pred             eCCCceE
Q psy16425         74 TDPMKSQ   80 (163)
Q Consensus        74 ~~~~~~~   80 (163)
                      ..+....
T Consensus        82 ~~p~g~~   88 (97)
T cd05846          82 TFPDGSK   88 (97)
T ss_pred             eCCCCCe
Confidence            6654443

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.91  E-value=5.8e-09  Score=62.41  Aligned_cols=59  Identities=19%  Similarity=0.321  Sum_probs=47.3

Q ss_pred             CcEEEeCCCcEEEEeEecc-CCCCeEEEEECCeEEEecCCce--E-------EeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASG-SPKPNITWRREGGELIAQGNGQ--E-------DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~--~-------~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.| .|+|.+.|+++|.++.......  .       .+..|.|.+|.++|++.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   79 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGT   79 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCee
Confidence            3677889999999999999 8999999999998876432221  1       24789999999999874

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.91  E-value=1.8e-08  Score=59.20  Aligned_cols=58  Identities=21%  Similarity=0.320  Sum_probs=38.9

Q ss_pred             eeEEEeeeec-----cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGEML-----MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~~~-----~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ...|.|....     .|.|.|.||| ++.++.        ...+. ....    ..|.|.++..+|+|.|+|.+.+.
T Consensus        12 ~~~l~Cp~~~~~~~~~~~p~i~Wyk-~~~~i~--------~~~~~-~~~~----~~L~I~~v~~~DsG~YtC~~~n~   74 (92)
T cd05757          12 GGKIVCPDLDDFKNENTLPPVQWYK-DCKLLE--------GDRKR-FVKG----SKLLIQNVTEEDAGNYTCKLTFT   74 (92)
T ss_pred             CCEEECCChHHccCCCCCCcEEEeE-CCEECC--------CCccE-EecC----CEEEEeeCChhhCEEEEEEEEec
Confidence            3456665422     3678999999 565542        11221 1122    28999999999999999999765

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.91  E-value=9.6e-08  Score=58.24  Aligned_cols=87  Identities=17%  Similarity=0.272  Sum_probs=57.1

Q ss_pred             CcceeEEEeeeeccC-----------CCEEEEEEcC---------CceE-EeeeeeE---EecCCeEEEEeCC--CceEE
Q psy16425          1 MAARMLIEIGEMLMA-----------ESTVAWLRVD---------TQTI-LTIQTHV---ITKNHRIGVTHSE--TKAWY   54 (163)
Q Consensus         1 ~~~~~~~~~~~~~~~-----------~~~i~W~k~~---------~~~~-~~~~~~~---~~~~~r~~~~~~~--~~~~~   54 (163)
                      |++++.|+|.....|           ...|.|++..         ...+ .+.++..   ....+|..+....  .++.+
T Consensus         1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~as   80 (117)
T cd05901           1 LSGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDAS   80 (117)
T ss_pred             CCCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceE
Confidence            578899999887443           3489999851         1122 2222221   2346788876544  47889


Q ss_pred             EEEcccCCCCCeEEEEEEEeC-CCceEeEEEEEE
Q psy16425         55 LHIREVRESDRGWYMCQVNTD-PMKSQVGYLEVV   87 (163)
Q Consensus        55 L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l~v~   87 (163)
                      |.|.+++.+|+|.|.|++... ........|.|.
T Consensus        81 L~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          81 LTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999999999544 333444455543

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.91  E-value=4.6e-09  Score=61.06  Aligned_cols=58  Identities=22%  Similarity=0.472  Sum_probs=47.2

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec-CCceE----EeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ-GNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++.++... .+...    ....|.|.++.++|++.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~   66 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGV   66 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEE
Confidence            566889999999999999999999999999988643 22222    24679999999999864

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.90  E-value=3.3e-09  Score=60.21  Aligned_cols=51  Identities=24%  Similarity=0.433  Sum_probs=41.8

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEecC---CceEEeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIAQG---NGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~---~~~~~~~~l~i~~v~~~~~~  156 (163)
                      |+++.|.|.+.|.|.|.++|++++.++....   ......+.|.|.++..+|++
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G   54 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTA   54 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCE
Confidence            6789999999999999999999998875432   22235678999999999876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.89  E-value=9.9e-09  Score=60.48  Aligned_cols=73  Identities=15%  Similarity=0.244  Sum_probs=48.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEe-eeee----EEecCCeEEEEeC--CCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILT-IQTH----VITKNHRIGVTHS--ETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~-~~~~----~~~~~~r~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|.....+.+.|.||+.+...+.- ....    ......|+.....  +.++++|.|.+++.+|+|.|+|.+.+.
T Consensus         8 ~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~   87 (94)
T cd07690           8 DTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVEDK   87 (94)
T ss_pred             CCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECCc
Confidence            47899999988999999999643222110 0000    0122344444432  235788999999999999999999543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.87  E-value=2e-09  Score=60.29  Aligned_cols=49  Identities=12%  Similarity=0.137  Sum_probs=39.5

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEec-CCceEEeceEEEEcchhhhHhh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQ-GNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      +.|.|.+.|.|.|++.|++++.++... ......+..|.|.+|..+|+++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~   50 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGI   50 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEE
Confidence            478999999999999999999887543 2223455689999999999874

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.87  E-value=6.2e-09  Score=61.14  Aligned_cols=57  Identities=21%  Similarity=0.279  Sum_probs=46.0

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--EeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.|. .|.+.|++++..+.... ...  .++.|+|.+++++|.+.
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~   69 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTRSDTGH   69 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEeCCCCEEEECcCChhhCEE
Confidence            35678899999999999999 99999999998865432 222  45689999999999763

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.86  E-value=6.1e-08  Score=58.79  Aligned_cols=86  Identities=20%  Similarity=0.255  Sum_probs=54.7

Q ss_pred             CcceeEEEeeeecc-------CCCEEEEEEcC-----Cc-eEEe-eee---eEEecCCeEEEEeCC--CceEEEEEcccC
Q psy16425          1 MAARMLIEIGEMLM-------AESTVAWLRVD-----TQ-TILT-IQT---HVITKNHRIGVTHSE--TKAWYLHIREVR   61 (163)
Q Consensus         1 ~~~~~~~~~~~~~~-------~~~~i~W~k~~-----~~-~~~~-~~~---~~~~~~~r~~~~~~~--~~~~~L~i~~v~   61 (163)
                      |.+.+.|.|.....       ..+.|.|.+..     .. .+.. .+.   ......+|+.+....  .++.+|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            45778899984422       24799999852     11 1111 111   123456788887643  368899999999


Q ss_pred             CCCCeEEEEEEEeC-CCceEeEEEEE
Q psy16425         62 ESDRGWYMCQVNTD-PMKSQVGYLEV   86 (163)
Q Consensus        62 ~~d~G~Y~C~~~~~-~~~~~~~~l~v   86 (163)
                      .+|+|.|.|.+... ........|.|
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V  106 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEV  106 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEE
Confidence            99999999999653 22334444444

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.85  E-value=7.9e-08  Score=52.45  Aligned_cols=62  Identities=21%  Similarity=0.223  Sum_probs=40.3

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|.. ...+...+.|++.+.................        ....|.|.+++.+|+|.|.|.+
T Consensus         2 ~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    2 SSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVS--------STSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             SEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTE--------EEEEEEESSCTGGGTEEEEEEE
T ss_pred             CeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccce--------eeeEEEEccCCHHHCEEEEEEC
Confidence            357788887 8889999999996544332211111111111        0013999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.85  E-value=7.5e-09  Score=58.22  Aligned_cols=51  Identities=20%  Similarity=0.342  Sum_probs=42.4

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~  156 (163)
                      |+++.|.|.+.|.|.|.++|++++..+....+... ..+.|.|.+|+++|++
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   52 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEG   52 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCE
Confidence            67899999999999999999999988765544432 4467999999999976

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.84  E-value=1.7e-08  Score=57.55  Aligned_cols=61  Identities=21%  Similarity=0.325  Sum_probs=42.5

Q ss_pred             ceeEEEeeeeccCC-CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          3 ARMLIEIGEMLMAE-STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      .++.|.|...+.|. ..+.||+ ++..+..               .    ..+|.|.++ .+|+|.|+|.+.+. ..+..
T Consensus        16 ~~V~L~C~~~~~p~~~~~~W~k-ng~~l~~---------------~----~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~   73 (78)
T cd05752          16 EKVTLTCNGFNSPEQNSTQWYH-NGKLLET---------------T----TNSYRIRAA-NNDSGEYRCQTQGS-SLSDP   73 (78)
T ss_pred             CCEEEEEeCCCCCCCccEEEEE-CCEEeec---------------c----CCeEEEeec-ccCCEEeEEECCCC-cCCCC
Confidence            46889999888775 4699999 5554310               0    117999999 99999999999543 34443


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|+
T Consensus        74 v~l~   77 (78)
T cd05752          74 VHLE   77 (78)
T ss_pred             EEEe
Confidence            4443

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.84  E-value=1.2e-08  Score=61.05  Aligned_cols=58  Identities=14%  Similarity=0.147  Sum_probs=46.2

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce----------EEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ----------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~----------~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+..|+.+.|.|.+.|+|+|.+.|++++.++.......          .....|+|.++..+|++.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~   79 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGL   79 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEE
Confidence            4557778999999999999999999999999976443221          124689999999999763

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.83  E-value=1.4e-08  Score=59.50  Aligned_cols=57  Identities=25%  Similarity=0.467  Sum_probs=45.4

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce----EEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~----~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+.......    .....|.|.++..+|.+
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g   69 (90)
T cd04972           9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQT   69 (90)
T ss_pred             CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCE
Confidence            4558899999999999999999999999998775443311    13457999999998864

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.83  E-value=9.3e-09  Score=58.34  Aligned_cols=51  Identities=27%  Similarity=0.453  Sum_probs=40.6

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEecCC---ceEEeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIAQGN---GQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~---~~~~~~~l~i~~v~~~~~~  156 (163)
                      |+++.|.|.+.|.|.|+++|++++.++.....   ...+++.|.|.++..+|.+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G   54 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSA   54 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCE
Confidence            67899999999999999999999988753321   1235568999999988865

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.83  E-value=1.3e-08  Score=59.48  Aligned_cols=59  Identities=27%  Similarity=0.535  Sum_probs=49.9

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.+.|.|.+.|++++..+........    ....|.|.++..+|.+.
T Consensus         8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   70 (90)
T PF07679_consen    8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGT   70 (90)
T ss_dssp             SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEE
T ss_pred             CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEE
Confidence            467889999999999999999999999999998877555543    45789999999999763

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.82  E-value=6.7e-09  Score=58.80  Aligned_cols=51  Identities=25%  Similarity=0.405  Sum_probs=42.0

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEecCC---ceEEeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIAQGN---GQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~---~~~~~~~l~i~~v~~~~~~  156 (163)
                      |+++.|.|.+.|.|.|.+.|++++..+.....   ....++.|.|.+++++|.+
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   54 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTA   54 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCE
Confidence            67899999999999999999999988754432   2235688999999999875

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.82  E-value=1.2e-08  Score=56.80  Aligned_cols=46  Identities=28%  Similarity=0.525  Sum_probs=36.6

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcch
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKK  151 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~  151 (163)
                      |+++.|.|.+.|.|.|.+.|++++.++............|.|.++.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~   46 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY   46 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc
Confidence            6789999999999999999999998875444333345678888874

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.79  E-value=5.9e-09  Score=58.36  Aligned_cols=49  Identities=14%  Similarity=0.276  Sum_probs=40.5

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      +.|.|.+.|.|.|.+.|++++.++.........+..|.|.++..+|++.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~   49 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGN   49 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEE
Confidence            4689999999999999999998876554434466889999999999763

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.78  E-value=3.3e-08  Score=58.28  Aligned_cols=62  Identities=23%  Similarity=0.298  Sum_probs=42.2

Q ss_pred             eeEEEee-eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIG-EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~-~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++|.|. ..+.|.+.+.|++ ++.....      ..+.|..+..   .++.|.|.+|+.+|+|.|+|.+.+.
T Consensus        20 ~~~L~C~pP~g~P~p~~~W~k-~~~~~~~------~~d~r~~~~~---~~G~L~fs~v~~~D~g~Y~C~A~n~   82 (96)
T cd05727          20 GVVLFCDPPPHYPDLSYRWLL-NEFPNFI------PEDGRRFVSQ---TNGNLYIAKVEASDRGNYSCFVSSP   82 (96)
T ss_pred             cEEEeeCCCCCCCCCEEEEEE-CCccccc------ccCCCeEEeC---CCCcEEEeecCHhhCceeEEEEEec
Confidence            4677774 5777999999999 4433211      1122322332   1238999999999999999999765

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.78  E-value=7.8e-08  Score=55.16  Aligned_cols=56  Identities=7%  Similarity=0.182  Sum_probs=40.6

Q ss_pred             ceeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .++.+.|.+.+.|.| .|.|++ ++..+..          +...     ....|.|.++  .|+|.|.|.+.|..
T Consensus        14 ~~v~l~C~a~G~P~P~~I~W~k-~g~~l~~----------~~~~-----~~s~L~i~~~--~d~g~Y~C~A~N~~   70 (81)
T cd05749          14 TPFNLTCQAVGPPEPVEILWWQ-GGSPLGD----------PPAP-----SPSVLNVPGL--NETSKFSCEAHNAK   70 (81)
T ss_pred             CCEEEEEEeeeecCCeEEEEEE-CCEECCC----------CCCC-----CCCEEEEccc--cCCeEEEEEEEecc
Confidence            368899999999999 799999 5554421          0111     1127888887  58899999998873

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.77  E-value=1.3e-08  Score=58.07  Aligned_cols=52  Identities=23%  Similarity=0.451  Sum_probs=41.2

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      |+++.|.|.+.|.|.|.+.|++++..+....+...    ..+.|+|.+++.+|.++
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   56 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGA   56 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEE
Confidence            67899999999999999999999887654433221    23689999999999763

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.77  E-value=4.2e-08  Score=67.06  Aligned_cols=61  Identities=18%  Similarity=0.376  Sum_probs=43.3

Q ss_pred             ceeEEEeeee-----ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEM-----LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~-----~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.+.|.+.     +.|.|.|+||| ++..+.        ...++.+...   +..|.|.+++.+|+|.|+|.+...
T Consensus       145 ~~v~L~C~~~~~~~~~~p~p~I~WyK-ng~~l~--------~~~r~~~~~~---~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        145 KDSKLHCYGTDGISSTFKDYTLTWYK-NGNIVL--------YTDRIQLRNN---NSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             CCEEEEeeCCCCccccCCCceEEEEE-CCEECC--------CCCCEEEeCC---CCEEEECcCCHHhCEEEEEEEEEe
Confidence            3577788764     34679999999 666552        2234444432   227999999999999999999653

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.77  E-value=1.6e-08  Score=56.56  Aligned_cols=49  Identities=18%  Similarity=0.399  Sum_probs=39.7

Q ss_pred             cEEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425        108 NVTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       108 ~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      ++.|.|.+.|.|.|.++|++++..+....... ...+.|.|.+++.+|.+
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G   50 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEG   50 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCE
Confidence            47899999999999999999998876554433 24567889999988875

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.76  E-value=1.3e-07  Score=54.60  Aligned_cols=70  Identities=14%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ..+++|.|...+. ...+.|++ ++..+        ..+.|+.....+     |.|..++++|+|.|.|.+.-.+-....
T Consensus        11 g~~v~L~C~~~s~-~A~v~W~~-ng~~l--------~~~~r~~~~~~G-----LlI~~~~~~dsG~Y~C~s~E~gf~~~~   75 (85)
T cd05872          11 GADVVLPCQLRSN-LASPVWLF-NGTPL--------NAQFSYRVGTDG-----LLILVTSPEHSGTYRCYSEEEGFQQLV   75 (85)
T ss_pred             CCCEEEECCCCCC-CccEEEEE-CCccc--------CCCcceEEeCCC-----CEEEECCHhhCEEEEEEEecCCCeEEE
Confidence            4578999988765 56999999 45544        233555555553     789999999999999998544433333


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.+.+
T Consensus        76 ~~y~l   80 (85)
T cd05872          76 ASYSL   80 (85)
T ss_pred             EEEEE
Confidence            34433

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.76  E-value=2.2e-07  Score=56.93  Aligned_cols=75  Identities=16%  Similarity=0.270  Sum_probs=48.7

Q ss_pred             ceeEEEeeeecc----CCCEEEE-EEcCCc----eEEee-eeeEE-----ecCCeEEEEeCC-CceEEEEEcccCCCCCe
Q psy16425          3 ARMLIEIGEMLM----AESTVAW-LRVDTQ----TILTI-QTHVI-----TKNHRIGVTHSE-TKAWYLHIREVRESDRG   66 (163)
Q Consensus         3 ~~~~~~~~~~~~----~~~~i~W-~k~~~~----~~~~~-~~~~~-----~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G   66 (163)
                      .++.|.|...+.    +...|.| |+..+.    .+... .+..+     ...+|+.+.++. .++.+|.|.+++.+|+|
T Consensus        14 ~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G   93 (116)
T cd05879          14 SDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTDNG   93 (116)
T ss_pred             CcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCcccCE
Confidence            357777776553    4469999 432211    12222 22222     223588877655 47889999999999999


Q ss_pred             EEEEEEEeCCC
Q psy16425         67 WYMCQVNTDPM   77 (163)
Q Consensus        67 ~Y~C~~~~~~~   77 (163)
                      .|+|.+.+.+.
T Consensus        94 ~Y~C~v~n~p~  104 (116)
T cd05879          94 TFTCDVKNPPD  104 (116)
T ss_pred             EEEEEEEcCCC
Confidence            99999977643

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.76  E-value=1.1e-08  Score=56.50  Aligned_cols=45  Identities=13%  Similarity=0.300  Sum_probs=37.5

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ++|.|.+.|+|.|.+.|+++|.++...    ..++.|.|.++..+|++.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~   45 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGT   45 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEE
Confidence            478999999999999999999888522    245689999999999763

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.75  E-value=2.4e-08  Score=57.03  Aligned_cols=56  Identities=13%  Similarity=0.225  Sum_probs=45.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+.+.|.|.+.+. .|.+.|+++|.++....+....+..|.|.++..+|++
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG   58 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSG   58 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCE
Confidence            4567899999999999986 5689999999887655444556678999999999875

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.74  E-value=1.8e-08  Score=58.28  Aligned_cols=56  Identities=18%  Similarity=0.372  Sum_probs=44.0

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-----EEeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~v~~~~~~  156 (163)
                      +.+.+|+.+.|.|.+.|.|.|.+.|++++..+.......     .....|.|.++..+|++
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G   64 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG   64 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCE
Confidence            457789999999999999999999999998875443321     13356889999888875

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.73  E-value=4.6e-08  Score=56.76  Aligned_cols=57  Identities=14%  Similarity=0.221  Sum_probs=46.1

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec-CCceEEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ-GNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+..|+++.|.|.+.+ |.|.+.|++++.++... .+.....+.|.|.+|+.+|.+.
T Consensus         5 ~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~   62 (87)
T cd05873           5 QRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGR   62 (87)
T ss_pred             eEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEE
Confidence            567889999999999865 67899999999988655 2334566789999999999763

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.73  E-value=2.9e-08  Score=58.97  Aligned_cols=66  Identities=21%  Similarity=0.335  Sum_probs=46.1

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC-----CceE----EeceEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG-----NGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-----~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      .|.+...+.  ...+..|+.+.|.|.+.|.|.|.++|++++..+....     +...    ..+.|.|.+++.+|.+
T Consensus         2 ~p~i~~~~~--~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G   76 (97)
T cd05869           2 KPKITYVEN--QTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAG   76 (97)
T ss_pred             CceEEEccC--ceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCE
Confidence            455555442  3345568999999999999999999999886653221     1111    2257999999999876

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.73  E-value=9.4e-08  Score=55.34  Aligned_cols=57  Identities=26%  Similarity=0.281  Sum_probs=40.6

Q ss_pred             ceeEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|...+ .|.+.|.|++.+. .+.          .+.. .    .+..|.|.+++.+|+|.|.|.+.|.
T Consensus        17 ~~v~L~C~~~~~~~~~~i~W~~~~~-~~~----------~~~~-~----~~~~L~I~~v~~~DsG~Y~C~a~n~   74 (85)
T cd05754          17 ADVSFICRAKSKSPAYTLVWTRVGG-GLP----------SRAM-D----FNGILTIRNVQLSDAGTYVCTGSNM   74 (85)
T ss_pred             CCEEEEEEcCCCCCCcEEEEEECCC-cCC----------Cccc-c----cCCEEEECCCCHHHCEEEEEEEecc
Confidence            46888898754 6889999999543 211          0110 1    1227999999999999999999665

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.72  E-value=4.1e-08  Score=57.78  Aligned_cols=59  Identities=17%  Similarity=0.389  Sum_probs=46.4

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-----EeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+.+.|.|.+.+.|.|.+.|++++..+........     ....|.|.++..+|.++
T Consensus         9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   72 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGK   72 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEE
Confidence            367789999999999999999999999999987654433221     12369999999998763

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.72  E-value=6.1e-08  Score=56.14  Aligned_cols=57  Identities=23%  Similarity=0.484  Sum_probs=45.7

Q ss_pred             cEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEecCC-ce-EEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQGN-GQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~-~~-~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+ .+.|.|.+.|++++..+..... .. ..++.|.|.+++.+|.+
T Consensus         5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G   64 (86)
T cd05724           5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEG   64 (86)
T ss_pred             cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCE
Confidence            5677899999999998 6899999999999988755322 22 24578999999999876

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.72  E-value=1.2e-07  Score=50.92  Aligned_cols=59  Identities=17%  Similarity=0.293  Sum_probs=41.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.+.+.+.|++ ++..+.          .......   ....|.|.+++..|+|.|+|.+.+.
T Consensus         3 ~~~~l~C~~~~~~~~~v~W~~-~~~~~~----------~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~   61 (63)
T smart00408        3 QSVTLTCPAEGDPVPNITWLK-DGKPLP----------ESNRLSA---SGSTLTIKSVSLEDSGEYTCVAENS   61 (63)
T ss_pred             ceEEEEeeCccCCCCeEEEEE-CCEECC----------CCCEEec---CCcEEEEeeCCcccCEEEEEEEecC
Confidence            467888887888889999999 443331          1111111   1238999999999999999999653

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.70  E-value=5.9e-07  Score=54.49  Aligned_cols=74  Identities=23%  Similarity=0.362  Sum_probs=51.0

Q ss_pred             cceeEEEeeee-ccCCCEEEEEEcCCc----eEE-e-----eeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          2 AARMLIEIGEM-LMAESTVAWLRVDTQ----TIL-T-----IQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~i~W~k~~~~----~~~-~-----~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..++.|.|... ......+.|++....    .+. .     .........+|+.+.... ..+++|.|.+++.+|+|.|.
T Consensus        16 G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~   95 (114)
T PF07686_consen   16 GESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYF   95 (114)
T ss_dssp             TSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEEE
T ss_pred             CCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEEE
Confidence            45788888888 567789999995431    111 0     111112335676666554 46889999999999999999


Q ss_pred             EEEEeC
Q psy16425         70 CQVNTD   75 (163)
Q Consensus        70 C~~~~~   75 (163)
                      |.+...
T Consensus        96 C~v~~~  101 (114)
T PF07686_consen   96 CQVSTS  101 (114)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            999655

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.70  E-value=1.8e-07  Score=54.31  Aligned_cols=81  Identities=14%  Similarity=0.179  Sum_probs=46.0

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCce
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~   79 (163)
                      ..+.|.|...+.  +...+.|...+........    ....+............|.|.+++.+|+|.|+|.+.+. +...
T Consensus         2 e~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~----~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~   77 (86)
T cd05862           2 EKLVLNCTARTELNVGIDFQWDYPGKKEQRAKS----VSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK   77 (86)
T ss_pred             CcEEEEEEEEeCCCCcEEEEEEcCCccccccee----cccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence            356778877654  4568899875443211000    00001111111112348999999999999999999775 3344


Q ss_pred             EeEEEEEE
Q psy16425         80 QVGYLEVV   87 (163)
Q Consensus        80 ~~~~l~v~   87 (163)
                      ....|.|+
T Consensus        78 ~~t~~~V~   85 (86)
T cd05862          78 NSTIVIVH   85 (86)
T ss_pred             ccEEEEEe
Confidence            44555553

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.70  E-value=1.8e-07  Score=55.58  Aligned_cols=53  Identities=15%  Similarity=0.300  Sum_probs=33.5

Q ss_pred             CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425         16 ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus        16 ~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ...|.|||.+ ........ ......|++....     .|.|.++..+|+|.|+|.+.|.
T Consensus        40 ~~~v~WyK~~-~~~~~~~~-~~~~~~Ri~~~~~-----~Lwf~Pa~~eDSG~Y~C~~rN~   92 (104)
T cd05896          40 GLSLMWYKSS-GDGEEPIE-IIFDGVRMSKEED-----SIWFRPAELQDSGLYTCVLRNS   92 (104)
T ss_pred             CceEEEEECC-CCCCCCCc-ccccceeEEEeCC-----EEEEEeCChhhCeEEEEEECCC
Confidence            3479999943 22111000 0001135555544     7999999999999999999665

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.69  E-value=5.5e-08  Score=57.91  Aligned_cols=57  Identities=26%  Similarity=0.417  Sum_probs=42.6

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC--CeEEEec-----CCceE----EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE--GGELIAQ-----GNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~--~~~~~~~-----~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+.|.|.|.+.|+++  +..+...     .+...    ....|+|.+|+.+|.+
T Consensus        10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G   77 (98)
T cd05870          10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG   77 (98)
T ss_pred             cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence            56788999999999999999999999984  3333211     11121    2357999999999876

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.69  E-value=3.9e-08  Score=55.59  Aligned_cols=49  Identities=22%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEec-CCceE---Eec--eEEEEcchhhhHhh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQ-GNGQE---DFP--FFKRTKKKKKKKKK  157 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~---~~~--~l~i~~v~~~~~~~  157 (163)
                      +.|.|.+.|.|.|.+.|++++..+... .+...   +++  .|.|.++..+|.+.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~   55 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGW   55 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEE
Confidence            479999999999999999999887533 23222   122  79999999999763

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.69  E-value=7.4e-08  Score=55.24  Aligned_cols=50  Identities=22%  Similarity=0.448  Sum_probs=39.7

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCceEEeceEEEEcch
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQEDFPFFKRTKKK  151 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~  151 (163)
                      ...+.+|+++.|.|.+.|+|.| +|.|++++.++...  .....+.|+|..+.
T Consensus         7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~~   57 (81)
T cd05749           7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGLN   57 (81)
T ss_pred             ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEcccc
Confidence            5678899999999999999999 79999999887531  22344678887764

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>smart00409 IG Immunoglobulin

Probab=98.68  E-value=1.1e-06  Score=49.97  Aligned_cols=64  Identities=19%  Similarity=0.320  Sum_probs=46.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.+.|...+.+.+.+.|++.++..+.        ...++....... ..+|.|.+++.+|+|.|.|.+.+.
T Consensus        10 ~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~   73 (86)
T smart00409       10 ESVTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNS   73 (86)
T ss_pred             CeEEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcC
Confidence            4688889888888999999994243331        233444443322 458999999999999999999644

>smart00410 IG_like Immunoglobulin like

Probab=98.68  E-value=1.1e-06  Score=49.97  Aligned_cols=64  Identities=19%  Similarity=0.320  Sum_probs=46.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.+.|...+.+.+.+.|++.++..+.        ...++....... ..+|.|.+++.+|+|.|.|.+.+.
T Consensus        10 ~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~   73 (86)
T smart00410       10 ESVTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNS   73 (86)
T ss_pred             CeEEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcC
Confidence            4688889888888999999994243331        233444443322 458999999999999999999644

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.67  E-value=6.9e-08  Score=57.05  Aligned_cols=52  Identities=23%  Similarity=0.360  Sum_probs=40.1

Q ss_pred             CCCcEEEEeEeccCCCCeEEEEECCeEEEecCC--ceEEeceEEEEcch-hhhHh
Q psy16425        105 EGSNVTLKCAASGSPKPNITWRREGGELIAQGN--GQEDFPFFKRTKKK-KKKKK  156 (163)
Q Consensus       105 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~--~~~~~~~l~i~~v~-~~~~~  156 (163)
                      +|+++.|.|.+.|.|.|.++|++++..+.....  ....++.|.|.++. .+|.+
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G   72 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSG   72 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCE
Confidence            478999999999999999999999988753322  22355788888875 46764

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.67  E-value=6.7e-08  Score=56.96  Aligned_cols=51  Identities=16%  Similarity=0.208  Sum_probs=39.6

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEe-cCCceEEeceEEEEcch-hhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIA-QGNGQEDFPFFKRTKKK-KKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~-~~~~~~~~~~l~i~~v~-~~~~~  156 (163)
                      |+.+.|.|.+.|.|.|.++|++++..+.. ..+....++.|.|.++. .+|.+
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G   71 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAG   71 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCE
Confidence            45799999999999999999999988743 23333466889998875 46765

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.67  E-value=4.9e-08  Score=57.79  Aligned_cols=57  Identities=23%  Similarity=0.356  Sum_probs=43.4

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC-----Cce----EEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG-----NGQ----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-----~~~----~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++..+....     +..    .....|+|.+|+.+|.+
T Consensus        10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   75 (96)
T cd05732          10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAG   75 (96)
T ss_pred             ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCE
Confidence            4567889999999999999999999999885543221     111    12357999999998876

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.67  E-value=2.5e-08  Score=55.60  Aligned_cols=48  Identities=15%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      +.|.|.+.|+|.|.+.|++++.++..... ...+..|.|.++..+|++.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~-~~~~~~L~I~~v~~~D~G~   48 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT-FKRGVHLTIYEVTEKDAGN   48 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE-EccCCEEEECcCCHHHCEE
Confidence            36899999999999999999998854422 2345679999999999874

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.67  E-value=3.1e-07  Score=55.20  Aligned_cols=73  Identities=15%  Similarity=0.256  Sum_probs=50.0

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCC--ce--EEeeeee----EEecCCeEEEEeCCC-ceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDT--QT--ILTIQTH----VITKNHRIGVTHSET-KAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~--~~--~~~~~~~----~~~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|..... +...+.|++...  ..  +......    .....+|+.+..... +.++|.|.+++.+|+|.|.|.+
T Consensus         7 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v   86 (105)
T cd00099           7 ESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAV   86 (105)
T ss_pred             CCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEE
Confidence            468888887765 778899999643  11  1111110    122356777665543 6789999999999999999999


Q ss_pred             EeC
Q psy16425         73 NTD   75 (163)
Q Consensus        73 ~~~   75 (163)
                      .+.
T Consensus        87 ~~~   89 (105)
T cd00099          87 SLS   89 (105)
T ss_pred             ecC
Confidence            654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.66  E-value=2.6e-08  Score=55.35  Aligned_cols=48  Identities=27%  Similarity=0.474  Sum_probs=38.0

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|.+.|.|+|.+.|+++++.+.........++.|+|.+++.+|.+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   48 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEG   48 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCE
Confidence            478999999999999999998766433222336678999999999875

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.66  E-value=9.6e-08  Score=56.29  Aligned_cols=61  Identities=20%  Similarity=0.410  Sum_probs=39.0

Q ss_pred             eeEEEeee---e--ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGE---M--LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~---~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +..|.|..   .  ..+.+.|.||| ++.++..       ...++.....   ...|.|.+|..+|+|.|+|.+.+.
T Consensus        12 ~~~l~Cp~~~~f~~~~~~~~v~WYK-d~~~l~~-------~~~~~~~~~~---~~~L~I~~v~~~D~G~YtC~~~~~   77 (95)
T cd05897          12 SGKLVCPDLSDFTINRTDVELQWYK-DSVLLDK-------DNEKFYSLKG---STYLHIIDVSLNDSGYYTCKLQFT   77 (95)
T ss_pred             CcEEECCCHHHcccCCCCCcEEEcc-CCEECcC-------CCcceEecCC---CCEEEEEEcChhhCEEEEEEEEEe
Confidence            44555642   2  35667999999 6655421       1122222111   126999999999999999999765

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.66  E-value=4.5e-08  Score=56.12  Aligned_cols=55  Identities=31%  Similarity=0.498  Sum_probs=43.4

Q ss_pred             EEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--EeceEEEEcchhhhHh
Q psy16425        102 VIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       102 ~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~  156 (163)
                      ....|+++.|.|.+.|.|.|.+.|++++..+........  ....|.|.+++.+|.+
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   61 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSG   61 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCE
Confidence            456799999999999999999999999887644332222  3467999999999876

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.65  E-value=3.7e-07  Score=55.31  Aligned_cols=73  Identities=18%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC--ceEE--eee-eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT--QTIL--TIQ-THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~--~~~~--~~~-~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|.....+...+.||+...  .+..  ... .......+|+.+.... .+.++|.|.+++.+|+|.|.|.+.+.
T Consensus        14 ~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   92 (109)
T cd04983          14 ENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES   92 (109)
T ss_pred             CCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            468888988777888999998532  1111  111 0011245677765443 46789999999999999999999543

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.65  E-value=4e-08  Score=55.86  Aligned_cols=48  Identities=23%  Similarity=0.424  Sum_probs=37.7

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecCCce---EEeceEEEEcchhhhHh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQGNGQ---EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~---~~~~~l~i~~v~~~~~~  156 (163)
                      ++|.|.+.|.|.|.+.|++++.++.......   ...+.|.|.++..+|.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G   51 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSG   51 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCE
Confidence            4799999999999999999998875443221   13468999999998875

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.65  E-value=3e-08  Score=55.12  Aligned_cols=48  Identities=23%  Similarity=0.506  Sum_probs=39.0

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhhHh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|.+.|.|.|.+.|++++..+........ ..+.|.|.++..+|.+
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G   49 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQG   49 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCE
Confidence            47899999999999999999987755443332 4678999999999876

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.65  E-value=1.2e-07  Score=53.97  Aligned_cols=51  Identities=22%  Similarity=0.350  Sum_probs=41.1

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|++++|.|.+.+.|.+ .+.|++|+..+.      ..+..|+|.++ .+|++.
T Consensus         9 ~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~------~~~~~l~i~~~-~~dsG~   60 (78)
T cd05752           9 WTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE------TTTNSYRIRAA-NNDSGE   60 (78)
T ss_pred             CeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee------ccCCeEEEeec-ccCCEE
Confidence            4568899999999999998864 699999998763      23467899999 888753

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.63  E-value=2.9e-08  Score=55.53  Aligned_cols=48  Identities=21%  Similarity=0.457  Sum_probs=37.9

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|.+.|.|.|.+.|++++..+....... ..++.|.|.+++.+|.+
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   49 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDG   49 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCE
Confidence            4689999999999999999988764432211 35578999999999876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.63  E-value=1.6e-07  Score=54.15  Aligned_cols=55  Identities=18%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             ceeEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|... +.+...+.||+ ++..+..        .         ..+..|.|.+++.+|+|.|+|.+.+.
T Consensus        15 ~~vtL~C~~~~~~~~~~~~w~k-~g~~~~~--------~---------~~~~~l~I~~~~~~dsG~Y~C~~~~~   70 (83)
T cd05753          15 EPLVLRCHGWKNKPVYKVTYYR-DGKAKKY--------S---------HSNSNLSIPQATLSDSGSYHCSGIIG   70 (83)
T ss_pred             CCEEEEeeCCCCCcceEEEEEE-CCeEccc--------c---------CCCceEEECccCHHHCEEEEEEEEeC
Confidence            3578888874 45667899999 4443210        0         01237999999999999999999665

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.63  E-value=6.2e-08  Score=54.77  Aligned_cols=49  Identities=24%  Similarity=0.390  Sum_probs=37.3

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEec-CCceE-Ee--c--eEEEEcchhhhHhh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQ-GNGQE-DF--P--FFKRTKKKKKKKKK  157 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~-~~--~--~l~i~~v~~~~~~~  157 (163)
                      +.|.|.+.|.|.|.+.|++++..+... .+... ..  +  .|.|.++..+|.+.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   55 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGW   55 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEE
Confidence            479999999999999999999887543 22222 11  1  68999999999763

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.61  E-value=5e-07  Score=54.92  Aligned_cols=71  Identities=13%  Similarity=0.244  Sum_probs=46.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ceEE---eeee-e-E---EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QTIL---TIQT-H-V---ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~~---~~~~-~-~---~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.... +...|.|||... ....   .... . .   .....|+.........++|.|.+++++|+|.|.|.+.
T Consensus        14 ~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~   92 (110)
T cd05899          14 QSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASS   92 (110)
T ss_pred             CcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEEEEee
Confidence            46888888776 678899999642 1111   1110 0 0   0123566655544456799999999999999999985


Q ss_pred             e
Q psy16425         74 T   74 (163)
Q Consensus        74 ~   74 (163)
                      .
T Consensus        93 ~   93 (110)
T cd05899          93 L   93 (110)
T ss_pred             C
Confidence            4

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.61  E-value=4.8e-07  Score=51.55  Aligned_cols=68  Identities=19%  Similarity=0.301  Sum_probs=43.3

Q ss_pred             eEEEeeeeccCC--CEEEEEEcCC-ce---EEeee--eeEE---ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEE
Q psy16425          5 MLIEIGEMLMAE--STVAWLRVDT-QT---ILTIQ--THVI---TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         5 ~~~~~~~~~~~~--~~i~W~k~~~-~~---~~~~~--~~~~---~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      +.|.|.......  ..+.|++... ..   +....  ....   ...+|+.+.... .++++|.|.+++.+|+|.|.|.+
T Consensus         2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406        2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence            456665544443  3789998642 11   11111  1111   235678777664 57889999999999999999963

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.61  E-value=1.7e-07  Score=55.38  Aligned_cols=51  Identities=20%  Similarity=0.253  Sum_probs=38.3

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEecC--CceEEeceEEEEcch-hhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIAQG--NGQEDFPFFKRTKKK-KKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~--~~~~~~~~l~i~~v~-~~~~~  156 (163)
                      |+++.|.|.+.|+|.|.++|++++..+....  .....++.|.|.++. .+|.+
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G   72 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAG   72 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCE
Confidence            4689999999999999999999998875332  223356778887755 46654

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.60  E-value=6.9e-08  Score=54.36  Aligned_cols=50  Identities=26%  Similarity=0.453  Sum_probs=39.5

Q ss_pred             cEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425        108 NVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       108 ~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      .+.|.|.+.|.|.|.+.|++++..+....+...    ....|.|.++..+|++.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   54 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGK   54 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEE
Confidence            368999999999999999999988744433322    34689999999999763

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.60  E-value=8.8e-07  Score=50.87  Aligned_cols=65  Identities=12%  Similarity=0.193  Sum_probs=39.1

Q ss_pred             eEEEeeeec-cCCCEEEEEEcCCceEEeeee-eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEML-MAESTVAWLRVDTQTILTIQT-HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|...+ .|.+.|.|++ ++..+..... ......+.....     ...|.|......|.|.|+|.+.+.
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~~~~~y~C~a~n~   68 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFR-DGEVLDGATYSKELLKDGKRETT-----VSTLPITPSDHDTGRTFTCRARNE   68 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEE-CCEEccCceeeeeEecCCCeEEE-----EEEEEEeCceecCCCEEEEEEcCc
Confidence            456777655 6888999999 5655432111 001111111111     126788888888999999999765

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.60  E-value=1.5e-07  Score=55.90  Aligned_cols=43  Identities=37%  Similarity=0.879  Sum_probs=35.4

Q ss_pred             CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEe
Q psy16425         90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA  134 (163)
Q Consensus        90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~  134 (163)
                      |.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+..
T Consensus         2 P~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~   44 (100)
T cd07693           2 PRIVEHP--SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLET   44 (100)
T ss_pred             CeEEecC--ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECcc
Confidence            4444433  356788999999999999999999999999988755

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.58  E-value=6.9e-08  Score=54.44  Aligned_cols=49  Identities=27%  Similarity=0.444  Sum_probs=37.7

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEe--cCCceE-EeceEEEEcchhhhHhh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIA--QGNGQE-DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~--~~~~~~-~~~~l~i~~v~~~~~~~  157 (163)
                      +.|.|.+.|.|.|.+.|++++.++..  ..+... .++.|.|.++..+|.+.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~   52 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGK   52 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEE
Confidence            47899999999999999999987752  222222 45679999999888763

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.58  E-value=1.1e-06  Score=54.02  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             ceeEEEeeeeccC----CCEEEEEEcCC---c--eEEee-eee-----EEecCCeEEEEeCC-CceEEEEEcccCCCCCe
Q psy16425          3 ARMLIEIGEMLMA----ESTVAWLRVDT---Q--TILTI-QTH-----VITKNHRIGVTHSE-TKAWYLHIREVRESDRG   66 (163)
Q Consensus         3 ~~~~~~~~~~~~~----~~~i~W~k~~~---~--~~~~~-~~~-----~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G   66 (163)
                      .++.|.|......    ...|.|++...   .  .+... ...     .....+|+.+.... .++++|.|.+++.+|+|
T Consensus        14 ~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G   93 (116)
T cd05715          14 SDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFTDNG   93 (116)
T ss_pred             CCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCcccCE
Confidence            4678888664332    25699987432   1  11111 111     11223566655433 35689999999999999


Q ss_pred             EEEEEEEeCCC
Q psy16425         67 WYMCQVNTDPM   77 (163)
Q Consensus        67 ~Y~C~~~~~~~   77 (163)
                      .|.|.+.+.+.
T Consensus        94 ~Y~C~v~~~~~  104 (116)
T cd05715          94 TYTCDVKNPPD  104 (116)
T ss_pred             EEEEEEEeCCC
Confidence            99999976643

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.57  E-value=2.4e-06  Score=52.39  Aligned_cols=75  Identities=15%  Similarity=0.194  Sum_probs=44.9

Q ss_pred             ceeEEEeeeeccC----CCEEEEEEcC---Cc--eEEeeeeeE-E----ecCCeEEEEeC-CCceEEEEEcccCCCCCeE
Q psy16425          3 ARMLIEIGEMLMA----ESTVAWLRVD---TQ--TILTIQTHV-I----TKNHRIGVTHS-ETKAWYLHIREVRESDRGW   67 (163)
Q Consensus         3 ~~~~~~~~~~~~~----~~~i~W~k~~---~~--~~~~~~~~~-~----~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~   67 (163)
                      ..+.|.|.....+    ...|.|++..   +.  .+....... .    ...+|+.+... ..++++|.|.+++++|+|.
T Consensus        14 ~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G~   93 (115)
T cd05880          14 TDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPTDNGT   93 (115)
T ss_pred             CCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChhhCEE
Confidence            3577888754332    3469998532   22  122221111 1    11245544432 2467899999999999999


Q ss_pred             EEEEEEeCCC
Q psy16425         68 YMCQVNTDPM   77 (163)
Q Consensus        68 Y~C~~~~~~~   77 (163)
                      |+|.+.+.+.
T Consensus        94 Y~C~v~~~~~  103 (115)
T cd05880          94 YTCQVKNPPD  103 (115)
T ss_pred             EEEEEEeCCC
Confidence            9999976643

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.57  E-value=2.2e-07  Score=55.06  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=43.1

Q ss_pred             cEEEeCCCcEEEEeEeccCCC-CeEEEEE-CCeEEEecC-CceE-----EeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPK-PNITWRR-EGGELIAQG-NGQE-----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~-p~v~W~~-~~~~~~~~~-~~~~-----~~~~l~i~~v~~~~~~~  157 (163)
                      ...+..|+++.|.|.+.|.|. |.+.|++ ++..+.... +...     ..+.|+|.+++.+|.+.
T Consensus         9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~   74 (96)
T cd05865           9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGI   74 (96)
T ss_pred             ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEE
Confidence            345778999999999999995 7999998 665554422 2211     13689999999999764

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.56  E-value=1.7e-06  Score=48.98  Aligned_cols=54  Identities=19%  Similarity=0.327  Sum_probs=40.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+...       ..            .|.|.++..+|+|.|+|.+.+..
T Consensus        15 ~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~-------~~------------~~~~~~~~~~~~g~y~C~~~~~~   68 (80)
T PF13895_consen   15 DSVTLTCSVSGNPPPQVQWYK-NGSPINSS-------QN------------GLFIPNVSPEDSGNYTCRASNGS   68 (80)
T ss_dssp             SEEEEEEEEESSSSSEEEEEE-TTEEEEEE-------SS------------EEEESSEEGGGTEEEEEEEEETT
T ss_pred             CcEEEEEEEEcccceeeeeee-eeeeeeee-------ee------------eeeeeeeccccCEEEEEEEEeCC
Confidence            468889988888889999999 55443210       00            26778899999999999997754

...

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.56  E-value=1.5e-06  Score=49.45  Aligned_cols=63  Identities=13%  Similarity=0.243  Sum_probs=40.5

Q ss_pred             eEEEee-eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIG-EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~-~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|. ..+.|.+.|.||+ ++..+...... ......+...      .+|.|......|.+.|+|++.|.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k-~~~~l~~~~~~-~~~~~~~t~~------s~L~~~~~~~Ddg~~~~C~A~n~   65 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYR-DRKELKGVISQ-QENGKTVSVS------NTIRFPVDRKDDGAILSCEASHP   65 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEE-CCEECCCCccc-ccCCceEEEE------EEEEEEeeeccCCcEEEEEEECh
Confidence            345554 4678999999999 66655221100 0111222221      27999999999999999999776

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.56  E-value=2.8e-07  Score=51.86  Aligned_cols=51  Identities=25%  Similarity=0.408  Sum_probs=38.4

Q ss_pred             CCcEEEEeEeccCCCCeEEEEEC-CeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRRE-GGELIAQGNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~-~~~~~~~~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      |+.+.|.|.+.|.|.|.+.|+++ +..+....... ...+.|.|..++.+|.+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   53 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTG   53 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCE
Confidence            67899999999999999999975 44443222222 25578999999998876

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.54  E-value=1.1e-06  Score=52.29  Aligned_cols=71  Identities=17%  Similarity=0.184  Sum_probs=46.2

Q ss_pred             cceeEEEeeeecc--CCCEEEEEEcCC--ce--EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          2 AARMLIEIGEMLM--AESTVAWLRVDT--QT--ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         2 ~~~~~~~~~~~~~--~~~~i~W~k~~~--~~--~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ...+.|.|.....  ....+.||++..  .+  +... .........|+...... ..++|.|.+++++|+|.|.|.+.
T Consensus         6 G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~~Dsg~Y~C~~~   83 (98)
T cd04984           6 GETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-NTASLTISGAQTEDEADYYCQVW   83 (98)
T ss_pred             CCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-CEEEEEECCCChhhCEEEEEEEc
Confidence            3568888877654  556799998742  11  1111 11111123466665443 56789999999999999999984

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.54  E-value=1.5e-07  Score=53.15  Aligned_cols=48  Identities=23%  Similarity=0.356  Sum_probs=36.6

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEec-CCceE--Ee---ceEEEEcchhhhHh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQ-GNGQE--DF---PFFKRTKKKKKKKK  156 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~--~~---~~l~i~~v~~~~~~  156 (163)
                      +.|.|.+.|.|.|.+.|++++..+... .+...  .+   ..|.|.++..+|.+
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G   54 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAG   54 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCE
Confidence            479999999999999999999887533 22221  11   26999999999876

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.53  E-value=3e-07  Score=54.38  Aligned_cols=51  Identities=31%  Similarity=0.504  Sum_probs=39.1

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc---eEEeceEEEEcc
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG---QEDFPFFKRTKK  150 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~---~~~~~~l~i~~v  150 (163)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++..+......   ...++.+.|.++
T Consensus         8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v   61 (95)
T cd05722           8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSV   61 (95)
T ss_pred             CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeee
Confidence            456778999999999999999999999999887544321   124456777766

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.52  E-value=2.4e-06  Score=55.76  Aligned_cols=86  Identities=19%  Similarity=0.205  Sum_probs=56.2

Q ss_pred             ceeEEEeeee-ccCCCEEEEEEcCCceEEee-eeeEEec--CCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC-
Q psy16425          3 ARMLIEIGEM-LMAESTVAWLRVDTQTILTI-QTHVITK--NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM-   77 (163)
Q Consensus         3 ~~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~-~~~~~~~--~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~-   77 (163)
                      .++.|.|... +...+.|.|+|.++..+... .+..+..  .+|+........+..|.|.+|+.+|+|.|.|.+...+. 
T Consensus        31 e~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G  110 (189)
T PHA02987         31 VNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSK  110 (189)
T ss_pred             CCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCC
Confidence            3578888874 66788999999644332221 1122221  34666544444567999999999999999999976643 


Q ss_pred             --ceEeEEEEEEc
Q psy16425         78 --KSQVGYLEVVV   88 (163)
Q Consensus        78 --~~~~~~l~v~~   88 (163)
                        .+...-|.|..
T Consensus       111 ~~~~gt~CLtVt~  123 (189)
T PHA02987        111 NNEKGVVCLNVTT  123 (189)
T ss_pred             CCceeEEEEEEEc
Confidence              34455566654

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.52  E-value=3.3e-07  Score=55.62  Aligned_cols=69  Identities=17%  Similarity=0.292  Sum_probs=45.2

Q ss_pred             cCCcccccCCCCcEEE--eCCCcEEEEeEeccCCCCeEEEEECCeEEEecC-Cce--------EEeceEEEEcch-hhhH
Q psy16425         88 VPPDILDYPTSTDMVI--REGSNVTLKCAASGSPKPNITWRREGGELIAQG-NGQ--------EDFPFFKRTKKK-KKKK  155 (163)
Q Consensus        88 ~~p~~~~~~~~~~~~~--~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~--------~~~~~l~i~~v~-~~~~  155 (163)
                      .+|.+...+.......  ..|..+.|.|.+.|.|.|.++|++++..+.... +..        ...+.|+|.+++ .+|.
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY   82 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence            3555555443212212  246789999999999999999999998875322 111        123679999987 4676


Q ss_pred             h
Q psy16425        156 K  156 (163)
Q Consensus       156 ~  156 (163)
                      +
T Consensus        83 G   83 (109)
T cd05773          83 A   83 (109)
T ss_pred             E
Confidence            5

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.52  E-value=1.3e-07  Score=52.66  Aligned_cols=48  Identities=29%  Similarity=0.481  Sum_probs=37.3

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|.+.|.|.|.+.|++++..+....... ..+..|.|.+++.+|.+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   49 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDG   49 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCE
Confidence            4789999999999999999988764332111 24568999999999976

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.52  E-value=1.4e-07  Score=55.77  Aligned_cols=58  Identities=19%  Similarity=0.252  Sum_probs=44.6

Q ss_pred             cEEEeCCCcEEEEeEecc-----CCCCeEEEEECCeEEEec----CCceEEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASG-----SPKPNITWRREGGELIAQ----GNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~-----~p~p~v~W~~~~~~~~~~----~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+.+.|.|.+.+     .|.|.+.|++++..+...    .+....++.|.|.++..+|++.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~   74 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGL   74 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeE
Confidence            455778999999999998     688999999998764221    2222356789999999999863

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.49  E-value=1e-06  Score=52.39  Aligned_cols=55  Identities=15%  Similarity=0.286  Sum_probs=41.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecC--CceEE--------eceEEEEcchhhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQG--NGQED--------FPFFKRTKKKKKK  154 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~--~~~~~--------~~~l~i~~v~~~~  154 (163)
                      ...+.+|+.+.|.|.+.|.|.| .+.|++++..+....  +....        ...|+|.++..+|
T Consensus        10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d   75 (98)
T cd05758          10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESD   75 (98)
T ss_pred             cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccc
Confidence            5567899999999999999999 699999998775432  22211        1479999999844

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.48  E-value=8.3e-07  Score=52.15  Aligned_cols=57  Identities=14%  Similarity=0.281  Sum_probs=43.4

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC-CeEEEecCCceE-Ee---ceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE-GGELIAQGNGQE-DF---PFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~-~~~~~~~~~~~~-~~---~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+.|.|. .+.|+++ +.++....+... .+   ..|+|.++..+|.+.
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~   70 (92)
T cd05866           9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGI   70 (92)
T ss_pred             ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEE
Confidence            456788999999999999998 8999985 555544434332 22   389999999999863

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.46  E-value=5e-06  Score=49.35  Aligned_cols=74  Identities=16%  Similarity=0.169  Sum_probs=48.1

Q ss_pred             eeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCC---CceEEEEEcccCCCC-CeEEEEEEEeC-CC
Q psy16425          4 RMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSE---TKAWYLHIREVRESD-RGWYMCQVNTD-PM   77 (163)
Q Consensus         4 ~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~i~~v~~~d-~G~Y~C~~~~~-~~   77 (163)
                      .+.|.|...+.|.| .|.|... +..+..      ...+|+.+....   .....|.|.++...| .|.|.|.+.|. +.
T Consensus        18 ~~~L~C~~~s~P~P~~i~W~w~-~~~i~~------~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~   90 (98)
T cd05898          18 RGKVKCFIGSTPPPDRIAWAWK-ENVLES------GTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGS   90 (98)
T ss_pred             cEEEEEEEccCCCCcEEEEEEc-cccccC------CCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCcc
Confidence            57888888677765 5688873 333321      123566655432   245689999998877 79999999776 44


Q ss_pred             ceEeEEE
Q psy16425         78 KSQVGYL   84 (163)
Q Consensus        78 ~~~~~~l   84 (163)
                      ....+.|
T Consensus        91 d~~~i~L   97 (98)
T cd05898          91 GTAIIQL   97 (98)
T ss_pred             ceEEEEe
Confidence            4444443

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.46  E-value=2e-07  Score=54.56  Aligned_cols=51  Identities=25%  Similarity=0.515  Sum_probs=38.7

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEe--------cCCce-EEeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIA--------QGNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~--------~~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      |+.+.|.|.+.|.|.|.+.|++++..+..        ..+.. ...+.|+|.+++.+|.+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G   60 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG   60 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCE
Confidence            67899999999999999999998875421        11111 13467999999999875

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.46  E-value=2.8e-06  Score=52.08  Aligned_cols=73  Identities=14%  Similarity=0.177  Sum_probs=48.2

Q ss_pred             cceeEEEeeeec--cCCCEEEEEEcCC--ceE--Ee-eeeeE-----EecCCeEEEEeCCC-ceEEEEEcccCCCCCeEE
Q psy16425          2 AARMLIEIGEML--MAESTVAWLRVDT--QTI--LT-IQTHV-----ITKNHRIGVTHSET-KAWYLHIREVRESDRGWY   68 (163)
Q Consensus         2 ~~~~~~~~~~~~--~~~~~i~W~k~~~--~~~--~~-~~~~~-----~~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y   68 (163)
                      ...+.|.|....  .+.+.+.||+...  .+.  .. .....     ....+|+....... ..++|.|.+++.+|+|.|
T Consensus        13 G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   92 (116)
T cd04982          13 SKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATY   92 (116)
T ss_pred             CCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEEE
Confidence            346888888766  6778899999631  111  11 11000     01245777665543 578999999999999999


Q ss_pred             EEEEEe
Q psy16425         69 MCQVNT   74 (163)
Q Consensus        69 ~C~~~~   74 (163)
                      .|.+..
T Consensus        93 ~C~~~~   98 (116)
T cd04982          93 YCAYWE   98 (116)
T ss_pred             EEEEec
Confidence            999843

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.46  E-value=2.8e-07  Score=52.87  Aligned_cols=48  Identities=19%  Similarity=0.337  Sum_probs=37.6

Q ss_pred             EEEeEeccCCCCeEEEEECCeEEEecCCce-----------EEeceEEEEcchhhhHhh
Q psy16425        110 TLKCAASGSPKPNITWRREGGELIAQGNGQ-----------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       110 ~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-----------~~~~~l~i~~v~~~~~~~  157 (163)
                      .+.|.+.|+|.|.++|+++|.++.......           ...+.|+|.+++.+|.+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   60 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGN   60 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeE
Confidence            368999999999999999999886554321           123479999999999874

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.46  E-value=1.6e-07  Score=52.97  Aligned_cols=48  Identities=27%  Similarity=0.537  Sum_probs=35.7

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEec---CCce--EEeceEEEEcchhhhHh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQ---GNGQ--EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~---~~~~--~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|.+.|.|.|.++|++++......   .+..  ..++.|.|.++..+|.+
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G   53 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTG   53 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCE
Confidence            478999999999999999998643221   1111  14568999999999876

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.46  E-value=2.5e-07  Score=52.67  Aligned_cols=47  Identities=19%  Similarity=0.286  Sum_probs=37.2

Q ss_pred             EEeEeccCCCCeEEEEECCeEEEecCCce---------EEeceEEEEcchhhhHhh
Q psy16425        111 LKCAASGSPKPNITWRREGGELIAQGNGQ---------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       111 l~C~~~~~p~p~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~v~~~~~~~  157 (163)
                      +.|.+.|+|.|.++|+++|.++.......         ...+.|.|.+++.+|++.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   58 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGI   58 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEE
Confidence            67999999999999999999886554321         123579999999998864

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.45  E-value=5.5e-07  Score=52.52  Aligned_cols=51  Identities=12%  Similarity=0.211  Sum_probs=39.2

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEecC-CceE--------EeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIAQG-NGQE--------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~~--------~~~~l~i~~v~~~~~~  156 (163)
                      |+.+.|.|.+.|.|+|.+.|++++..+.... +...        ....|.|.++..+|.+
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G   60 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSG   60 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCE
Confidence            6889999999999999999999998764432 1111        1157899999998876

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.44  E-value=3e-06  Score=50.22  Aligned_cols=78  Identities=13%  Similarity=0.194  Sum_probs=47.6

Q ss_pred             eeEEEeeeeccCCCE-EEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          4 RMLIEIGEMLMAEST-VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~-i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ++.+.|...+.|.|. +.|.+ ++..+.....+......    .....-.+.|.|..++.+|+|.|+|.+.|. ...+..
T Consensus        20 ~~~L~V~ieAYP~p~~~~W~~-~~~~l~~~~~~~~~~~~----~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~t   94 (101)
T cd05860          20 NLDLIVEYEAYPKPEHQQWIY-MNRTLTNTSDHYVKSRN----ESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVT   94 (101)
T ss_pred             CEEEEEEEEeCCCCeeeEEEc-CCcccCccccceeEEec----cCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEE
Confidence            567778888899998 99999 44433211111111000    000012348999999999999999999765 334444


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus        95 F~l~v   99 (101)
T cd05860          95 FNVYV   99 (101)
T ss_pred             EEEEE
Confidence            44544

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.44  E-value=2.7e-06  Score=50.50  Aligned_cols=75  Identities=17%  Similarity=0.327  Sum_probs=48.2

Q ss_pred             cceeEEEeeeec-cCCCEEEEEEcCCce---EEe-eeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          2 AARMLIEIGEML-MAESTVAWLRVDTQT---ILT-IQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~i~W~k~~~~~---~~~-~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ...+.|.|.... .....+.|++.....   ... .........+|+.+.... .+.++|.|.+++.+|+|.|.|.+...
T Consensus         7 G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   86 (98)
T cd05716           7 GGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDD   86 (98)
T ss_pred             CCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccC
Confidence            346888887554 356778999864211   111 111112334677665333 46789999999999999999998544


Q ss_pred             C
Q psy16425         76 P   76 (163)
Q Consensus        76 ~   76 (163)
                      +
T Consensus        87 ~   87 (98)
T cd05716          87 G   87 (98)
T ss_pred             C
Confidence            3

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.42  E-value=9.8e-07  Score=51.96  Aligned_cols=58  Identities=14%  Similarity=0.174  Sum_probs=45.9

Q ss_pred             CcEEEeCCCcEEEEeE-eccCCCCeEEEEECCeEEEe-cCCceE-EeceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCA-ASGSPKPNITWRREGGELIA-QGNGQE-DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~~~~-~~~~~~-~~~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+.+.|.|. ..|.|.|.+.|+.++..... ..+... ..+.|.|.+|..+|.+
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g   71 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSH   71 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCC
Confidence            3577889999999997 58999999999987755333 333333 4589999999999987

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.41  E-value=2.5e-06  Score=52.65  Aligned_cols=73  Identities=18%  Similarity=0.177  Sum_probs=46.4

Q ss_pred             cceeEEEeeeeccC------CCEEEEEEcCCc----e-EEeeeee---EEecCCeEEEEeC-CCceEEEEEcccCCCCCe
Q psy16425          2 AARMLIEIGEMLMA------ESTVAWLRVDTQ----T-ILTIQTH---VITKNHRIGVTHS-ETKAWYLHIREVRESDRG   66 (163)
Q Consensus         2 ~~~~~~~~~~~~~~------~~~i~W~k~~~~----~-~~~~~~~---~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G   66 (163)
                      ..++.|.|......      ...+.||+....    . +......   .....+|+.+..+ ..++++|.|.+++.+|+|
T Consensus        14 G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg   93 (119)
T cd05712          14 GLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDSG   93 (119)
T ss_pred             cccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhCe
Confidence            34688888654221      356899996422    1 2111111   0123457777643 456789999999999999


Q ss_pred             EEEEEEEe
Q psy16425         67 WYMCQVNT   74 (163)
Q Consensus        67 ~Y~C~~~~   74 (163)
                      .|.|.+..
T Consensus        94 ~Y~C~~~~  101 (119)
T cd05712          94 KYFFRVEL  101 (119)
T ss_pred             EEEEEEEc
Confidence            99999843

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.39  E-value=8.1e-07  Score=51.86  Aligned_cols=57  Identities=16%  Similarity=0.195  Sum_probs=43.7

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC----CceEEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG----NGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~----~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+.+ |.+.+.|++++..+....    ........|.|.+++.+|.+.
T Consensus         5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   65 (89)
T cd04979           5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGV   65 (89)
T ss_pred             EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEE
Confidence            456788999999999977 888999999998765432    222344568999999998763

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.38  E-value=5.9e-07  Score=48.19  Aligned_cols=52  Identities=31%  Similarity=0.498  Sum_probs=40.1

Q ss_pred             CCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        105 EGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       105 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +|+++.|.|.+.+.|.+.+.|++++..+............|.|.+++.+|.+
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   52 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSG   52 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCE
Confidence            4889999999888999999999998876521112235568999999888764

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.38  E-value=9.1e-07  Score=51.78  Aligned_cols=52  Identities=15%  Similarity=0.317  Sum_probs=36.7

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECC----eEEEecCCc-------------eEEeceEEEEcchhhhHhh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREG----GELIAQGNG-------------QEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~----~~~~~~~~~-------------~~~~~~l~i~~v~~~~~~~  157 (163)
                      |+.++|.|.+.|.|.|.|+|++++    ..+......             ......|.|.+|+.+|.+.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   69 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGE   69 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcE
Confidence            678999999999999999999863    222111100             0123579999999998763

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.38  E-value=1.8e-06  Score=50.57  Aligned_cols=52  Identities=25%  Similarity=0.360  Sum_probs=39.1

Q ss_pred             CCCcEEEEeEeccCCCCeEEEEECCeEEEec--CCceEEeceEEEEcchh-hhHh
Q psy16425        105 EGSNVTLKCAASGSPKPNITWRREGGELIAQ--GNGQEDFPFFKRTKKKK-KKKK  156 (163)
Q Consensus       105 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~--~~~~~~~~~l~i~~v~~-~~~~  156 (163)
                      .|+.+.|.|.+.|+|.|.++|++++..+...  ......++.|.|.++.+ +|.+
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G   72 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAG   72 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCE
Confidence            3467999999999999999999999877332  22234557888988775 6654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.37  E-value=2.7e-06  Score=50.31  Aligned_cols=58  Identities=16%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEe--------cCCceE-----EeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIA--------QGNGQE-----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~--------~~~~~~-----~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+.+.|.|.+.|+++++.+..        ..+...     ....|.|.+|..+|.+.
T Consensus         6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~   76 (95)
T cd05882           6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGE   76 (95)
T ss_pred             cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEE
Confidence            56788999999999999999999999988764321        122111     24689999999999864

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.35  E-value=1.7e-06  Score=50.84  Aligned_cols=56  Identities=18%  Similarity=0.264  Sum_probs=41.5

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEE-CCeEEEecCCceE-----EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRR-EGGELIAQGNGQE-----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~-~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~  156 (163)
                      ...+..|+++.|.|.+.|.| +.+.|++ ++..+....+...     ....|+|.+++.+|++
T Consensus         9 ~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   70 (92)
T cd04977           9 QGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAG   70 (92)
T ss_pred             cEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCE
Confidence            45688899999999999987 4999997 5555544222221     2257999999999976

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.34  E-value=3.1e-06  Score=51.04  Aligned_cols=70  Identities=16%  Similarity=0.220  Sum_probs=44.5

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcCC--ce--EEeeeee-EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVDT--QT--ILTIQTH-VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~~--~~--~~~~~~~-~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .++.|.|...... ...+.||+...  .+  +...... ......|+.... ....++|.|.+++++|+|.|.|.+.
T Consensus        16 ~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~~~~~Dsg~Y~Ca~~   91 (106)
T cd04980          16 ESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG-SGTDFTLTISRVEPEDAAVYYCQQY   91 (106)
T ss_pred             CCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec-cCCEEEEEECCCChHHCEEEEEEEe
Confidence            4688889875554 57799998641  11  1111110 111234565543 2356789999999999999999984

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.33  E-value=1.9e-06  Score=50.39  Aligned_cols=52  Identities=17%  Similarity=0.372  Sum_probs=36.8

Q ss_pred             CCcEEEEeEeccCCCCeEEEEEC----CeEEEecCCce-------------EEeceEEEEcchhhhHhh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRRE----GGELIAQGNGQ-------------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~----~~~~~~~~~~~-------------~~~~~l~i~~v~~~~~~~  157 (163)
                      |+++.|.|.+.|.|.|.+.|+++    +..+.......             .....|.|.+|+.+|.+.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   69 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGE   69 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEE
Confidence            67899999999999999999984    33222111100             012579999999999763

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.33  E-value=6.6e-07  Score=50.80  Aligned_cols=44  Identities=23%  Similarity=0.489  Sum_probs=32.8

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecC--Cce--EEeceEEEEcchh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQG--NGQ--EDFPFFKRTKKKK  152 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~--~~~--~~~~~l~i~~v~~  152 (163)
                      +.|.|.+.|.|.|.++|++++..+....  ...  ...+.|.|..++.
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~   48 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNG   48 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCC
Confidence            4789999999999999999998774332  112  2457888888753

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.33  E-value=9.7e-07  Score=50.11  Aligned_cols=45  Identities=18%  Similarity=0.429  Sum_probs=33.3

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecCC--ceE--EeceEEEEcchhh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQGN--GQE--DFPFFKRTKKKKK  153 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~--~~~--~~~~l~i~~v~~~  153 (163)
                      +.|.|.+.|.|.|.++|++++.++.....  ...  .++.|.|..+..+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~   49 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGE   49 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccC
Confidence            47899999999999999999987633222  111  4578888877654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.32  E-value=2e-06  Score=49.73  Aligned_cols=51  Identities=24%  Similarity=0.358  Sum_probs=38.8

Q ss_pred             CcEEEEeEeccCCCC--eEEEEECCeEEEecCC--------ceEEeceEEEEcchhhhHhh
Q psy16425        107 SNVTLKCAASGSPKP--NITWRREGGELIAQGN--------GQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       107 ~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~~--------~~~~~~~l~i~~v~~~~~~~  157 (163)
                      +++.|.|.+.|.|.|  .+.|++++..+.....        .....+.|.|.+++.+|++.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   61 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGK   61 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCee
Confidence            468999999999987  5799999988754321        01245789999999999864

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.32  E-value=6.8e-07  Score=50.52  Aligned_cols=48  Identities=21%  Similarity=0.447  Sum_probs=37.1

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecCCce----EEeceEEEEcchhhhHh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQGNGQ----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~----~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|.+.|.|.|.+.|++++..+.......    ..+..|.|.++..+|.+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G   52 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTG   52 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCE
Confidence            3689999999999999999998875443221    13457999999998876

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.32  E-value=5.8e-06  Score=50.70  Aligned_cols=72  Identities=14%  Similarity=0.179  Sum_probs=47.3

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCC-ce-EE-ee--eeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDT-QT-IL-TI--QTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~-~~-~~-~~--~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|..... ....+.||+... .. .. ..  ........+|+..... ..++++|.|.+++.+|+|.|.|.+..
T Consensus        15 ~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   93 (116)
T cd07706          15 EEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST   93 (116)
T ss_pred             CCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence            468888876543 567799998632 11 11 11  1111123467777643 34678999999999999999999954

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.32  E-value=6.9e-07  Score=50.27  Aligned_cols=49  Identities=22%  Similarity=0.405  Sum_probs=37.8

Q ss_pred             EEEEeEecc-CCCCeEEEEECCeEEEecCCce-------EEeceEEEEcchhhhHhh
Q psy16425        109 VTLKCAASG-SPKPNITWRREGGELIAQGNGQ-------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       109 ~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~-------~~~~~l~i~~v~~~~~~~  157 (163)
                      +.|.|.+.| .|.|.+.|++++.++.......       .....|.|.++..+|.+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   57 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGE   57 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeE
Confidence            468999999 9999999999998875543321       134679999999998763

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.31  E-value=2.3e-06  Score=49.55  Aligned_cols=51  Identities=20%  Similarity=0.253  Sum_probs=38.3

Q ss_pred             CcEEEEeEeccCCCC--eEEEEECCeEEEecC---Cc---e--EEeceEEEEcchhhhHhh
Q psy16425        107 SNVTLKCAASGSPKP--NITWRREGGELIAQG---NG---Q--EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       107 ~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~---~~---~--~~~~~l~i~~v~~~~~~~  157 (163)
                      +.+.|.|.+.|.|.|  .+.|++++..+....   ..   .  ...+.|+|.+++.+|++.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   61 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGT   61 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeE
Confidence            468999999999987  589999998774322   11   1  134689999999999763

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.29  E-value=1e-06  Score=51.79  Aligned_cols=58  Identities=7%  Similarity=0.106  Sum_probs=45.6

Q ss_pred             cEEEeCCCcEEEEeEecc-----CCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASG-----SPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~-----~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      .+.+.+|.+..|.|...+     +|.|.+.|++++.++.........++.|.|.+|+.+|++.
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~   66 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGN   66 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEE
Confidence            456778999999998753     2678999999999876554433367899999999999874

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.28  E-value=1e-05  Score=48.62  Aligned_cols=71  Identities=13%  Similarity=0.372  Sum_probs=45.3

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCc----e--EEeee---eeEE----ecCCeEEEEeCCCceEEEEEcccCCCCCeEE
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQ----T--ILTIQ---THVI----TKNHRIGVTHSETKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~----~--~~~~~---~~~~----~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y   68 (163)
                      ..++.|.|.........+.||+....    +  +....   ....    ....|+...... ..++|.|.+++.+|+|.|
T Consensus         6 G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~sDsgtY   84 (104)
T cd05720           6 GQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS-NSFVLTLKNFQKENEGYY   84 (104)
T ss_pred             CCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC-CEEEEEECCCCHHHCEEE
Confidence            34788888765555567999997522    1  11111   1111    113456554433 677899999999999999


Q ss_pred             EEEEE
Q psy16425         69 MCQVN   73 (163)
Q Consensus        69 ~C~~~   73 (163)
                      .|.+.
T Consensus        85 ~Ca~~   89 (104)
T cd05720          85 FCSVA   89 (104)
T ss_pred             EEEEc
Confidence            99874

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.28  E-value=4.3e-06  Score=46.61  Aligned_cols=57  Identities=19%  Similarity=0.297  Sum_probs=37.7

Q ss_pred             eEEEeeeeccC-CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          5 MLIEIGEMLMA-ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         5 ~~~~~~~~~~~-~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      +.|.|...+.+ .+.+.|+. ...... .       .......    ....|.|.++..+|.|.|+|.+.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~~-~~~~~~-~-------~~~~~~~----~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWYD-SNPSFN-S-------NSRGSSS----SNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEET-EEEEEE-E-------EEEEEEE----EEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEEe-cCCcee-e-------eeeeccc----eeeEEEEccCCHHhCcEEEEEEEC
Confidence            77888888887 89999991 111100 0       0001111    123899999999999999999864

...

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.27  E-value=5.1e-06  Score=47.71  Aligned_cols=56  Identities=27%  Similarity=0.424  Sum_probs=42.0

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-----EEeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~v~~~~~~  156 (163)
                      ..+..|+.+.|.|.+.+.|.|.+.|++++..+.......     .....|.|.++..+|.+
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   64 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSG   64 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCE
Confidence            345679999999999999999999999988765332221     12246888899888765

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.26  E-value=2.7e-06  Score=50.31  Aligned_cols=58  Identities=9%  Similarity=0.215  Sum_probs=41.9

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEE--------ecCCceE-----EeceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELI--------AQGNGQE-----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~--------~~~~~~~-----~~~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+++.|.|.+.+.|.|.+.|++.++.+.        ...+...     ....|+|.++..+|.+
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG   75 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEG   75 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCE
Confidence            36778999999999999999999999986433221        1112211     2357899999999875

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.25  E-value=3.6e-06  Score=48.61  Aligned_cols=55  Identities=22%  Similarity=0.409  Sum_probs=42.9

Q ss_pred             cEEEeCCCcEEEEeEecc-CCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASG-SPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|++++|.|.+.+ .|.|.+.|++++..+...  ....++.|.|.+++.+|.+
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG   65 (85)
T cd05754          10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAG   65 (85)
T ss_pred             ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCE
Confidence            556788999999999974 788899999988664221  2234578999999999875

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.25  E-value=3.5e-06  Score=49.69  Aligned_cols=57  Identities=16%  Similarity=0.205  Sum_probs=43.8

Q ss_pred             cEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEe--cCCce-E-EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIA--QGNGQ-E-DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~--~~~~~-~-~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+.+.|.|.. .|.|.|.+.|++++.++..  +.+.. . ..+.|.|.+|+++|.+
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g   73 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRG   73 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCc
Confidence            4568889999999976 5899999999999875421  22222 2 3589999999999975

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.23  E-value=1.1e-06  Score=47.77  Aligned_cols=51  Identities=25%  Similarity=0.494  Sum_probs=37.7

Q ss_pred             CCcEEEEeEe-ccCCCCeEEEEECCeEEEecCCceE------EeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAA-SGSPKPNITWRREGGELIAQGNGQE------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~------~~~~l~i~~v~~~~~~  156 (163)
                      |+++.|.|.+ .+.+.+.+.|++++...........      ....|+|.+++++|++
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G   58 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSG   58 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCE
Confidence            7889999999 6778889999999876433322221      1113999999999976

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.21  E-value=1.6e-05  Score=46.55  Aligned_cols=60  Identities=10%  Similarity=0.161  Sum_probs=40.2

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ...|.|.|... .+...+.|++ ++......         +   .........|.|.+|+.+|+|.|+|+..+.
T Consensus        16 G~~VtL~C~~~-~~~~~f~l~k-~g~~~~~~---------~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          16 GKPVTLRCQGP-YGAVEYRLYR-EGSTFAVK---------K---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCcEEEEEecC-CCCCEEEEEE-CCCCcccc---------c---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            34688888775 7777889999 44332110         0   001112347999999999999999999654

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.20  E-value=3.6e-06  Score=47.74  Aligned_cols=43  Identities=19%  Similarity=0.358  Sum_probs=31.7

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEec--CCce--EEeceEEEEcch
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQ--GNGQ--EDFPFFKRTKKK  151 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~--~~~~--~~~~~l~i~~v~  151 (163)
                      +.|.|.+.|+|.|.++|++++..+...  ....  ..++.|.|..+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~   47 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSG   47 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccC
Confidence            468999999999999999999875322  2222  245788888764

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.17  E-value=4.3e-06  Score=47.68  Aligned_cols=51  Identities=20%  Similarity=0.449  Sum_probs=36.6

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCe---EEEe-cCC----c-eEEeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGG---ELIA-QGN----G-QEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~---~~~~-~~~----~-~~~~~~l~i~~v~~~~~~  156 (163)
                      |+++.|.|.+.|.|.|.+.|++++.   .+.. ...    . ....+.|.|.++..+|.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G   60 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG   60 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCE
Confidence            6789999999999999999999732   1111 111    0 113467999999999875

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.15  E-value=1.7e-06  Score=49.29  Aligned_cols=48  Identities=27%  Similarity=0.407  Sum_probs=34.7

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEe--------cCCce-EEeceEEEEcchhhhHh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIA--------QGNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~--------~~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|.+.|+|.|.+.|++++.....        ..+.. ...+.|.|.++..+|.+
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G   57 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSG   57 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCE
Confidence            47999999999999999997543211        11111 24578999999988876

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.13  E-value=6.7e-06  Score=47.49  Aligned_cols=51  Identities=20%  Similarity=0.148  Sum_probs=38.2

Q ss_pred             CcEEEEeEecc--CCCCeEEEEECCeEEEecC---CceE-----EeceEEEEcchhhhHhh
Q psy16425        107 SNVTLKCAASG--SPKPNITWRREGGELIAQG---NGQE-----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       107 ~~~~l~C~~~~--~p~p~v~W~~~~~~~~~~~---~~~~-----~~~~l~i~~v~~~~~~~  157 (163)
                      +++.|.|.+.+  .+.+.+.|++||.++....   ....     .++.|.|.+++.+|++.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~   61 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGK   61 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEE
Confidence            46899999976  4577899999999986321   1112     34689999999999863

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.12  E-value=8.5e-05  Score=42.49  Aligned_cols=77  Identities=18%  Similarity=0.218  Sum_probs=42.3

Q ss_pred             eEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC--CceEe
Q psy16425          5 MLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP--MKSQV   81 (163)
Q Consensus         5 ~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~--~~~~~   81 (163)
                      +.|.|.. .+-|.+.|.||+ ++..+............++..      ..+|.|..-...|...|+|++.+..  .....
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~~~~~~~~~~~~~t~------~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~   74 (82)
T cd05883           2 IELNCTAMASKPAATIRWFK-GNKELTGKSTVEETWSRMFTV------TSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQ   74 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEE-CCEECcCcccceeccCCCcEE------EEEEEEECchhhCCCEEEEEEcCcccCCceee
Confidence            4455554 456889999999 555542111100011111222      2278887777777788999996652  22333


Q ss_pred             EEEEEEc
Q psy16425         82 GYLEVVV   88 (163)
Q Consensus        82 ~~l~v~~   88 (163)
                      ..|.|++
T Consensus        75 ~~L~V~y   81 (82)
T cd05883          75 RYLEVQY   81 (82)
T ss_pred             EEEEEEE
Confidence            4555543

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.11  E-value=9.9e-06  Score=46.63  Aligned_cols=53  Identities=17%  Similarity=0.255  Sum_probs=41.2

Q ss_pred             cEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|++++|.|.+. +.+.+.+.|++++..+..    ...+..|.|.+++.+|++
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~----~~~~~~l~I~~~~~~dsG   61 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY----SHSNSNLSIPQATLSDSG   61 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc----cCCCceEEECccCHHHCE
Confidence            34678899999999986 456778999999976642    123467999999999876

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.11  E-value=4.1e-06  Score=48.29  Aligned_cols=51  Identities=14%  Similarity=0.193  Sum_probs=37.5

Q ss_pred             CCcEEEEeEeccC--CCCeEEEEECCeEEEecC---------CceEEeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGS--PKPNITWRREGGELIAQG---------NGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~--p~p~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~v~~~~~~  156 (163)
                      |+.+.|.|.+.+.  |.|.+.|..++..+....         ........|+|.+++.+|.+
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG   62 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSG   62 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCE
Confidence            6889999999998  888999998775432110         01124568999999999875

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.11  E-value=5e-05  Score=45.87  Aligned_cols=71  Identities=15%  Similarity=0.320  Sum_probs=43.6

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCc----eEE----eee-e-eEEe---cCCeEEEEeC-CCceEEEEEcccCCCCCeE
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQ----TIL----TIQ-T-HVIT---KNHRIGVTHS-ETKAWYLHIREVRESDRGW   67 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~----~~~----~~~-~-~~~~---~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~   67 (163)
                      ..+.|.|..... ....+.||++...    .+.    ... . ....   ...|+..... ....+.|.|.+++++|+|.
T Consensus         7 ~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~   86 (107)
T cd07700           7 NTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDSGT   86 (107)
T ss_pred             CCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHCEE
Confidence            467888876543 3457999997532    111    110 0 1111   1345654332 2346789999999999999


Q ss_pred             EEEEEE
Q psy16425         68 YMCQVN   73 (163)
Q Consensus        68 Y~C~~~   73 (163)
                      |.|...
T Consensus        87 YyCa~~   92 (107)
T cd07700          87 YFCMTV   92 (107)
T ss_pred             EEEeEc
Confidence            999974

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.10  E-value=0.00013  Score=41.88  Aligned_cols=64  Identities=16%  Similarity=0.277  Sum_probs=36.0

Q ss_pred             eEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEE-ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEML-MAESTVAWLRVDTQTILTIQTHVI-TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|...+ .|.+.|.|++ ++..+........ ...+.+....      .|.+......+.+.|+|.+.+.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~s------~l~~~~~~~d~g~~~~C~v~h~   67 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFK-GDKELKGVKLKEEDENGKTFTVTS------SLRFQVDREDDGAPIICRVDHP   67 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEE-CCEEccCceeeEecCCCCEEEEEE------EEEEEcchhhCCCEEEEEEeCh
Confidence            456666544 4788999999 5555421110111 1122222221      5666655566678999999665

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.02  E-value=1.2e-05  Score=46.39  Aligned_cols=51  Identities=12%  Similarity=0.236  Sum_probs=37.4

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEecC--------CceEEeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIAQG--------NGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~--------~~~~~~~~l~i~~v~~~~~~  156 (163)
                      |+++.|.|.+.+.|.+.+.|+.+++......        ........|.|.+++.+|++
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG   59 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSG   59 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCE
Confidence            7889999999999999999998765321100        11123568999999999875

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.01  E-value=3.6e-05  Score=43.43  Aligned_cols=50  Identities=26%  Similarity=0.541  Sum_probs=38.4

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ..+.+|+++.|.|.+.+.|.+.+.|++++..+.....      .+.+.+++.+|++
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~------~~~~~~~~~~~~g   58 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN------GLFIPNVSPEDSG   58 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS------EEEESSEEGGGTE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee------eeeeeeeccccCE
Confidence            3578899999999999999999999999877763322      1566677766654

...

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.00  E-value=0.00012  Score=42.05  Aligned_cols=65  Identities=17%  Similarity=0.262  Sum_probs=36.8

Q ss_pred             eEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEE-ecC-CeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEML-MAESTVAWLRVDTQTILTIQTHVI-TKN-HRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~-~~~-~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +.|.|.+.+ .|.+.|.|++ ++..+........ ..+ +.+...      ..|.|......|...|+|.+.+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~~~~~~~~~~~~~~t~~~~------s~l~~~~~~~d~g~~~tC~v~h~~   69 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRK-GDQELEGAPTSVLEDGNGKTFTVS------SSVEFQVTREDDGAEITCSVGHES   69 (83)
T ss_pred             EEEEEEecCccCCCEeEEEE-CCEECCCcceeEEECCCCCEEEEE------EEEEEEecchhCCCEEEEEEECcc
Confidence            345555544 4778999999 5554321111111 112 122222      256676667778899999996653

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.99  E-value=2.7e-05  Score=45.61  Aligned_cols=56  Identities=13%  Similarity=0.141  Sum_probs=40.0

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCe--EEE----ecCCceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGG--ELI----AQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~--~~~----~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      .....+|+++.|.|.. +.|.|.+.|+++..  ...    ...+....++.|.|.++.++|++
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG   66 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAG   66 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCE
Confidence            4557889999999996 57889999998432  211    12233345567999999999875

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.97  E-value=8.5e-06  Score=45.98  Aligned_cols=49  Identities=16%  Similarity=0.353  Sum_probs=35.5

Q ss_pred             EEEEeEecc-CCCCeEEEEECCeEEEecCCc----e----EEeceEEEEcchhhhHhh
Q psy16425        109 VTLKCAASG-SPKPNITWRREGGELIAQGNG----Q----EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       109 ~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~----~----~~~~~l~i~~v~~~~~~~  157 (163)
                      +.|.|.+.+ .|.+.+.|++++..+......    .    ...+.|.|.++..+|++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~   58 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGE   58 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEE
Confidence            478999874 688899999999887533211    1    134679999999998763

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.96  E-value=1.7e-05  Score=45.74  Aligned_cols=56  Identities=16%  Similarity=0.157  Sum_probs=44.6

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...+..|+++.|.|...+. .+.+.|++++..+..+.+.......|.|..++.+|++
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG   60 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSG   60 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCE
Confidence            5678899999999999775 6699999999988655455545555789999888875

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.96  E-value=2.7e-05  Score=44.38  Aligned_cols=28  Identities=29%  Similarity=0.636  Sum_probs=23.7

Q ss_pred             cEEEEeEec-cCCCCeEEEEECCeEEEec
Q psy16425        108 NVTLKCAAS-GSPKPNITWRREGGELIAQ  135 (163)
Q Consensus       108 ~~~l~C~~~-~~p~p~v~W~~~~~~~~~~  135 (163)
                      .+.|.|.+. ++|+++++|++++.++...
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~   29 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGV   29 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCC
Confidence            368999986 6899999999999998543

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd00096 Ig Immunoglobulin domain

Probab=97.95  E-value=4.6e-05  Score=41.19  Aligned_cols=64  Identities=16%  Similarity=0.207  Sum_probs=38.8

Q ss_pred             EEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          6 LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .+.|...+.+...+.|++.+ .........     ..............|.|.+++..|.|.|.|.+.+.
T Consensus         2 ~l~C~~~~~~~~~~~W~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   65 (74)
T cd00096           2 TLTCLASGPPPPTITWLKNG-KPLPSSVLT-----RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS   65 (74)
T ss_pred             EEEEEecCCCCCcEEEEECC-EECCCcccE-----EeccccCcceeEEEEEECccCcccCcEEEEEEecC
Confidence            45666666788999999943 322110000     00001111123458999999999999999999554

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.94  E-value=7.8e-05  Score=43.81  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=40.8

Q ss_pred             ceeEEEeeeecc-C-CCEEEEEEcCCceEEeeee---eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLM-A-ESTVAWLRVDTQTILTIQT---HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~-~-~~~i~W~k~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|...+. | .+.|+|++ ++..+.....   .....++.+...      ..|.+......|.+.|+|.+.+.+
T Consensus        14 ~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~~~~~~~~~~~~~gt~~~~------s~l~v~~~~~~~~~~y~C~v~h~~   85 (95)
T cd00098          14 GSVTLTCLATGFYPPDITVTWLK-NGKELTSGVTTTPPVPNSDGTYSVS------SQLTVSPSDWNSGDTYTCVVTHES   85 (95)
T ss_pred             CCeEEEEEEeeEECCCcEEEEEE-CCEECCCceeccccccCCCCCEEEE------EEEEECHHHhCCCCCEEEEEEeCC
Confidence            357778887776 5 47899999 5555432211   111222223222      256677777779999999996653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.94  E-value=5e-05  Score=45.07  Aligned_cols=56  Identities=14%  Similarity=0.201  Sum_probs=40.0

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecC--CceE--------EeceEEEEcchhhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQG--NGQE--------DFPFFKRTKKKKKK  154 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~--~~~~--------~~~~l~i~~v~~~~  154 (163)
                      ......+|+.+.|.|.+.+.|+| .|.|.+++..+....  +...        ....|+|.++.+.|
T Consensus         9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d   75 (98)
T cd05898           9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEAD   75 (98)
T ss_pred             ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCcccc
Confidence            36778899999999999988887 478988877654432  1111        33678888886655

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.90  E-value=5.3e-05  Score=44.64  Aligned_cols=58  Identities=16%  Similarity=0.274  Sum_probs=40.8

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEe--------cCCceE-----EeceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA--------QGNGQE-----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~--------~~~~~~-----~~~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+++.|.|.+.+.|.+.+.|++.++.+..        ..+...     ....|+|.+|+.+|.+
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG   75 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEG   75 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCE
Confidence            466788999999999998888889999864332211        111111     2346899999999875

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.90  E-value=0.00019  Score=44.13  Aligned_cols=71  Identities=15%  Similarity=0.260  Sum_probs=44.1

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcCC--ceEE--eee---eeE---EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVDT--QTIL--TIQ---THV---ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~~--~~~~--~~~---~~~---~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|......  ...+.||+...  .+..  ...   ...   ....+|+...... ...+.|.|.+++++|+|.|.
T Consensus        13 ~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   92 (117)
T cd04981          13 QSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVYY   92 (117)
T ss_pred             CCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEEEE
Confidence            3578888654332  46789999742  2211  110   110   1123566665444 34568999999999999999


Q ss_pred             EEEE
Q psy16425         70 CQVN   73 (163)
Q Consensus        70 C~~~   73 (163)
                      |...
T Consensus        93 Ca~~   96 (117)
T cd04981          93 CARG   96 (117)
T ss_pred             EEEE
Confidence            9874

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.80  E-value=0.00038  Score=40.03  Aligned_cols=56  Identities=13%  Similarity=0.248  Sum_probs=39.1

Q ss_pred             eeEEEeeeeccC--CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGEMLMA--ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~~~~~--~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ++.|.|...+.+  .+.|.|...++......     .           .+..+|.+..++..|+|.++|.+...
T Consensus        16 sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~-----~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          16 NLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL-----N-----------QDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             cEEEEEecCCCCCCCccEEEeCCCCccceec-----c-----------CCccEEEeceeCcccCCEEEEEEEEC
Confidence            677888876644  45999998665433110     0           11238999999999999999999543

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.79  E-value=9.3e-05  Score=43.59  Aligned_cols=55  Identities=15%  Similarity=0.212  Sum_probs=38.5

Q ss_pred             EEeCCCcEEEEeEeccCCCCeEEEEECCeEEEe--------------cCCce-------EEeceEEEEcchhhhHh
Q psy16425        102 VIREGSNVTLKCAASGSPKPNITWRREGGELIA--------------QGNGQ-------EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       102 ~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~--------------~~~~~-------~~~~~l~i~~v~~~~~~  156 (163)
                      ...+|++++|.|...+.+.+.+.|+++++....              ..+..       .+...|+|.+++.+|.+
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsg   78 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSD   78 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCE
Confidence            467899999999999889999999976533210              01111       11235999999999875

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.77  E-value=0.00033  Score=40.29  Aligned_cols=63  Identities=14%  Similarity=0.279  Sum_probs=35.8

Q ss_pred             EEEeeeec-cCCCEEEEEEcCCceEEeeee--eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          6 LIEIGEML-MAESTVAWLRVDTQTILTIQT--HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         6 ~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .|.|.+.+ .|...|.|++ ++..+.....  .....++.+....      +|.+..-...+...|+|.+.+.
T Consensus         3 ~LtC~a~gf~P~~~itW~k-ng~~l~~~~~~~~~~~~~~t~~~~s------~L~~~~~~~d~g~~ytC~v~h~   68 (83)
T cd05884           3 QLTCKTSGSKPAADIRWFK-NDKEIKDVKYLKEEDANRKTFTVSS------TLDFRVDRSDDGVAIICRVDHE   68 (83)
T ss_pred             EEEEEeCCccCCCEEEEEE-CCEECcCceeeEeeCCCCCEEEEEE------EEEEEcccccCCCEEEEEEech
Confidence            34444433 6679999999 5555422111  1111222333222      6777766677788999999655

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.74  E-value=0.00026  Score=41.68  Aligned_cols=60  Identities=8%  Similarity=0.050  Sum_probs=37.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..|.|.|.... ....+.|||.+........      ..    ...+.....+.|.+++.+|+|.|.|...
T Consensus        16 ~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~------~~----~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          16 ENVTLQCHSDI-RFDRFILYKEGRSKPVLHL------YE----KHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CeEEEEEecCC-CCCEEEEEECCCCCCceec------cc----ccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            46888887654 5667899995433211000      00    0001123478999999999999999973

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.74  E-value=0.00013  Score=41.78  Aligned_cols=48  Identities=21%  Similarity=0.342  Sum_probs=32.2

Q ss_pred             EEEEeEecc-CCCCeEEEEECCeEEEecCCce-E------EeceEEEEcchhhhHhh
Q psy16425        109 VTLKCAASG-SPKPNITWRREGGELIAQGNGQ-E------DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       109 ~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~-~------~~~~l~i~~v~~~~~~~  157 (163)
                      +.|.|.+.| .|.+.|+|++++.++....... .      ..+.|.+ .++++|.++
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~-~p~~eDdG~   57 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLML-KVTKEDDGV   57 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEE-ECchhhCCC
Confidence            689999975 7999999999998886543211 1      2233444 566666654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.67  E-value=6.5e-05  Score=44.32  Aligned_cols=57  Identities=9%  Similarity=0.155  Sum_probs=41.5

Q ss_pred             cEEEeCCCcEEEEeEe-ccC----CCCeEEEEECCeEEEecCCce-E--EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAA-SGS----PKPNITWRREGGELIAQGNGQ-E--DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~-~~~----p~p~v~W~~~~~~~~~~~~~~-~--~~~~l~i~~v~~~~~~  156 (163)
                      ...+..|.+..|.|+- +++    +.|++.|++++.++....... .  ++..|.|.+|..+|++
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G   68 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSG   68 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCE
Confidence            3456778999999983 443    677999999998875332211 1  3468999999999976

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.64  E-value=0.0001  Score=43.09  Aligned_cols=57  Identities=19%  Similarity=0.267  Sum_probs=41.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec-CCceEEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ-GNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|++|+|.|... .+...+.|+++|...... .......+.|.|.+|+.+|++.
T Consensus        10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~   67 (91)
T cd05751          10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGR   67 (91)
T ss_pred             CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEE
Confidence            34577899999999885 567789999998754321 1112345679999999998863

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.61  E-value=0.0027  Score=35.60  Aligned_cols=63  Identities=19%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             EEEeeeecc--CCCEEEEEEcCCceEEee-e--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          6 LIEIGEMLM--AESTVAWLRVDTQTILTI-Q--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         6 ~~~~~~~~~--~~~~i~W~k~~~~~~~~~-~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .|.|.+.+.  +...|.|++ ++..+... .  ......++.+....      .|.|......+...|+|.+...
T Consensus         3 ~L~C~a~gf~P~~i~v~W~k-~g~~~~~~~~~~~~~~~~~gt~~~~s------~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        3 TLVCLVSGFYPPDITVTWLR-NGQEVTSGVSTTDPLKNSDGTYFLSS------YLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             EEEEEEEeEeCCCCEEEEEE-CCEECCCCEEECceEECCCCCEEEEE------EEEEccccCCCCCEEEEEEEEc
Confidence            344554443  557999999 55542111 1  11112233333322      5677666677778999999654

>smart00409 IG Immunoglobulin

Probab=97.60  E-value=0.0005  Score=38.70  Aligned_cols=57  Identities=28%  Similarity=0.533  Sum_probs=42.0

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC-CeEEEecCCceE-E---eceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE-GGELIAQGNGQE-D---FPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~-~~~~~~~~~~~~-~---~~~l~i~~v~~~~~~  156 (163)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+... .   ...|.|.++..+|.+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G   64 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSG   64 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCe
Confidence            45577899999999998888889999998 655542222222 1   257899999888775

>smart00410 IG_like Immunoglobulin like

Probab=97.60  E-value=0.0005  Score=38.70  Aligned_cols=57  Identities=28%  Similarity=0.533  Sum_probs=42.0

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC-CeEEEecCCceE-E---eceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE-GGELIAQGNGQE-D---FPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~-~~~~~~~~~~~~-~---~~~l~i~~v~~~~~~  156 (163)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+... .   ...|.|.++..+|.+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G   64 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSG   64 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCe
Confidence            45577899999999998888889999998 655542222222 1   257899999888775

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>KOG3515|consensus

Probab=97.57  E-value=0.00024  Score=55.93  Aligned_cols=124  Identities=20%  Similarity=0.319  Sum_probs=70.1

Q ss_pred             eeeeccCCCEEEEEEcCCceEEeeee-eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC--CCceEeEEEE
Q psy16425          9 IGEMLMAESTVAWLRVDTQTILTIQT-HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD--PMKSQVGYLE   85 (163)
Q Consensus         9 ~~~~~~~~~~i~W~k~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~--~~~~~~~~l~   85 (163)
                      ....+.|.+.+.|+. +......... .......-.. ... .....+.+...+..+.|.|+|.+.+.  ........+.
T Consensus       121 ~~~~~~P~~nlrW~~-n~r~e~~~~~~~~~~~~~a~g-ss~-t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~  197 (741)
T KOG3515|consen  121 AKVAGRPNPNLRWGF-NNRAELNAVNQRGRVGAGALG-SSY-TEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLT  197 (741)
T ss_pred             ecCCCCCCcceeeee-ccEEeecccCCcccccccccC-cee-ccccceeeEEEEecCCceeEcccccccCccccccceeE
Confidence            456777889999998 3333222111 1111101000 000 01125788888999999999999653  2222222333


Q ss_pred             EEc--CCcccccC-CCCcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEec
Q psy16425         86 VVV--PPDILDYP-TSTDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQ  135 (163)
Q Consensus        86 v~~--~p~~~~~~-~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~  135 (163)
                      +.+  +....... ...-....+|..+.|.|.+. ++|.+.+.|+++.......
T Consensus       198 i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~  251 (741)
T KOG3515|consen  198 IIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSES  251 (741)
T ss_pred             eecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhh
Confidence            332  22211111 11124567899999999765 6899999999998776443

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.52  E-value=0.00036  Score=41.52  Aligned_cols=55  Identities=22%  Similarity=0.305  Sum_probs=37.2

Q ss_pred             EEeCCCcEEEEeEecc-CCCCe--EEEEECCeEEEecCCce------EEeceEEEEcchhhhHhh
Q psy16425        102 VIREGSNVTLKCAASG-SPKPN--ITWRREGGELIAQGNGQ------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       102 ~~~~g~~~~l~C~~~~-~p~p~--v~W~~~~~~~~~~~~~~------~~~~~l~i~~v~~~~~~~  157 (163)
                      .+.+|+.++|.|.+.+ .|.+.  +.|++++..+.......      .....+++ .+.++|.++
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~-~~~r~D~g~   75 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITI-TVDREDHGA   75 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEE-ecchhhCCc
Confidence            3578999999999985 78886  79999998885432211      12234444 466777654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.42  E-value=0.00038  Score=39.99  Aligned_cols=26  Identities=42%  Similarity=0.893  Sum_probs=22.2

Q ss_pred             EEEEeEecc-CCCCeEEEEECCeEEEe
Q psy16425        109 VTLKCAASG-SPKPNITWRREGGELIA  134 (163)
Q Consensus       109 ~~l~C~~~~-~p~p~v~W~~~~~~~~~  134 (163)
                      +.|.|.+.+ +|.+.|+|++++..+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~   28 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEG   28 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCC
Confidence            579999986 69999999999987654

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.39  E-value=0.0005  Score=39.24  Aligned_cols=26  Identities=38%  Similarity=0.727  Sum_probs=22.1

Q ss_pred             cEEEEeEecc-CCCCeEEEEECCeEEE
Q psy16425        108 NVTLKCAASG-SPKPNITWRREGGELI  133 (163)
Q Consensus       108 ~~~l~C~~~~-~p~p~v~W~~~~~~~~  133 (163)
                      ++.|.|.+.| +|.+.++|++++..+.
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~   27 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLD   27 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEcc
Confidence            3689999986 6889999999998764

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.39  E-value=0.00023  Score=39.39  Aligned_cols=48  Identities=21%  Similarity=0.444  Sum_probs=33.0

Q ss_pred             cEEEEeEeccCC-CCeEEEEECCeE--EEecCCceEEeceEEEEcchhhhHh
Q psy16425        108 NVTLKCAASGSP-KPNITWRREGGE--LIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       108 ~~~l~C~~~~~p-~p~v~W~~~~~~--~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      .+.|.|.+.+.| .+.+.|+ +...  ...........+.|.|.+|+.+|.+
T Consensus        17 ~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g   67 (75)
T PF13927_consen   17 SVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNG   67 (75)
T ss_dssp             EEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTE
T ss_pred             eEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCc
Confidence            399999999877 7789999 1111  1111122236678999999998875

...

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.33  E-value=0.00088  Score=41.60  Aligned_cols=71  Identities=14%  Similarity=0.144  Sum_probs=39.9

Q ss_pred             ceeEEEeeeec-----cCCCEEEEEEcCCceEEeeeeeE----EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEML-----MAESTVAWLRVDTQTILTIQTHV----ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~-----~~~~~i~W~k~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..++++|....     .+...|.|.. ++..+....+..    .....+..+.....|+++|.+.....- .|.|+|++.
T Consensus        28 ~tV~IPC~v~n~~~~ni~~m~VkWk~-~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt  105 (130)
T PF08204_consen   28 DTVVIPCFVNNLEANNISEMYVKWKF-KNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVT  105 (130)
T ss_dssp             SEEEE--BBSS---SSGGGEEEEEEE-TTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEE
T ss_pred             CCEEEEeEeccccccccceEEEEEEE-CCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEE
Confidence            35788888755     4567799999 556665432210    111123333333357889999887766 899999995


Q ss_pred             eC
Q psy16425         74 TD   75 (163)
Q Consensus        74 ~~   75 (163)
                      ..
T Consensus       106 ~~  107 (130)
T PF08204_consen  106 EL  107 (130)
T ss_dssp             ET
T ss_pred             ec
Confidence            44

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=97.32  E-value=0.00059  Score=40.73  Aligned_cols=57  Identities=12%  Similarity=0.155  Sum_probs=40.8

Q ss_pred             cEEEeCCCcEEEEeEec------cC-----CCCeEEEEECCeEEEecC-------CceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAAS------GS-----PKPNITWRREGGELIAQG-------NGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~------~~-----p~p~v~W~~~~~~~~~~~-------~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+.+.|.|...      ++     +...+.|++++..+....       +....+..|.|.++..+|++
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG   83 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSG   83 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCe
Confidence            45678899999999962      11     233799999975443322       34457889999999999875

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.30  E-value=0.0039  Score=46.71  Aligned_cols=81  Identities=19%  Similarity=0.239  Sum_probs=59.2

Q ss_pred             CceEEEEEcccCCCCCeEEEEEEEeC----CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC--e
Q psy16425         50 TKAWYLHIREVRESDRGWYMCQVNTD----PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP--N  122 (163)
Q Consensus        50 ~~~~~L~i~~v~~~d~G~Y~C~~~~~----~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~  122 (163)
                      .++..|.|.++...++|.|+=.+.+.    ......+.+.....|.+...+    ..+.+|+...-.|.+..+ |+-  .
T Consensus       286 p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p----~PVL~Ge~YkAtC~vA~YYPp~Svr  361 (566)
T PHA03269        286 TSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG----DPVLLGNPYAAYCKVNKYYPPHSVI  361 (566)
T ss_pred             CCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC----CccccCCCceEEEEeeeecCCCceE
Confidence            46678999999999999998665332    122344556667778666543    347889999999999864 533  5


Q ss_pred             EEEEECCeEEEe
Q psy16425        123 ITWRREGGELIA  134 (163)
Q Consensus       123 v~W~~~~~~~~~  134 (163)
                      +.|+.|++++..
T Consensus       362 lrWf~ng~~V~~  373 (566)
T PHA03269        362 VKWTSNFGNIGK  373 (566)
T ss_pred             EEEEeCCcccCc
Confidence            999999888763

>PHA02633 hypothetical protein; Provisional

Probab=97.30  E-value=0.00081  Score=35.84  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=25.4

Q ss_pred             EEEEcccCCCCCeEEEEEEEeCC-CceEeEEEEEEc
Q psy16425         54 YLHIREVRESDRGWYMCQVNTDP-MKSQVGYLEVVV   88 (163)
Q Consensus        54 ~L~i~~v~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~   88 (163)
                      .|+|-++..+|+|.|.|.+.+.. .....+.|.|..
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            79999999999999999996542 223334455443

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.25  E-value=0.0019  Score=38.42  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=41.2

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCe-EEEEECCeEEEecCC--ce-------EEeceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPN-ITWRREGGELIAQGN--GQ-------EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~~~~~--~~-------~~~~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+++.|.|.+.++|+|+ +.|.+++..+.....  ..       ...+.|.+..+..++++
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G   78 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGG   78 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCc
Confidence            356788999999999999999998 999988765422211  00       12256777777766654

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.22  E-value=0.0073  Score=35.55  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=33.4

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.+...-.+...|.|++ ++..+...   .......++.+....      .|.+..-...+...|+|.+...
T Consensus        19 L~C~a~gFyP~~I~vtW~~-dg~~~~~~~~~s~~~~~~~~Ty~~~S------~L~v~~~~w~~~~~ytC~V~H~   85 (94)
T cd05847          19 LLCLISGYTPGTIEVEWLV-DGQVATLVAASTAPQKEEGSTFSTTS------ELNVTQEDWKSGKTYTCKVTHQ   85 (94)
T ss_pred             EEEEEEeEECCCCEEEEEE-CCEECcCceeecccEECCCCcEEEEE------EEEEchHHhcCCCeEEEEEEEC
Confidence            3344444444568899999 55543111   111122233333222      4556644444667899999654

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.21  E-value=0.0014  Score=37.94  Aligned_cols=27  Identities=52%  Similarity=1.079  Sum_probs=22.9

Q ss_pred             CCcEEEEeEec-cCCCCeEEEEECCeEE
Q psy16425        106 GSNVTLKCAAS-GSPKPNITWRREGGEL  132 (163)
Q Consensus       106 g~~~~l~C~~~-~~p~p~v~W~~~~~~~  132 (163)
                      |+.+.+.|.+. ++|+|.++|+.++..+
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~   41 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPV   41 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence            67899999875 6999999999999877

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.20  E-value=0.00087  Score=40.75  Aligned_cols=48  Identities=29%  Similarity=0.549  Sum_probs=33.0

Q ss_pred             EEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCC-CeEEEEECCeEEEe
Q psy16425         86 VVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPK-PNITWRREGGELIA  134 (163)
Q Consensus        86 v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~~  134 (163)
                      |.++|........ ......|+.++|.|.+.+ +|+ ..++|++||..+..
T Consensus         2 v~~~P~~p~i~~~-~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~   51 (111)
T cd05772           2 VRAKPSVPVVSGP-SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA   51 (111)
T ss_pred             cccCCCCcEeCCc-hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence            3455655544432 333456888999999987 564 58999999988743

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.20  E-value=0.014  Score=33.71  Aligned_cols=66  Identities=12%  Similarity=0.168  Sum_probs=37.9

Q ss_pred             eeEEEe-eeeccCCCEEEEEEcCCceE-EeeeeeE-EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEI-GEMLMAESTVAWLRVDTQTI-LTIQTHV-ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~-~~~~~~~~~i~W~k~~~~~~-~~~~~~~-~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .+.+.| ...+.|.+.|.|+.. +..+ ....... ....+.+.+..      .|.+..-...+...++|.+.+..
T Consensus        16 ~~~~~C~s~~~~P~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~S------~l~~~~~~~~~~~~~~C~~~~~~   84 (89)
T PF08205_consen   16 EVTLTCSSSGGYPPPQITWYLD-GGPVVASNTTQSSSPDNGLFTVSS------TLTLTPTREDHGKTLTCRASHPA   84 (89)
T ss_dssp             EEEEEEEEEEEBS-EEEEEEET-TCEECEEEEEEEEETTTTTEEEEE------EEEEETTGGGTTEEEEEEEEETT
T ss_pred             EEEEEEEeCCeECCeEEEEEEC-CCceeeeeeeeeeccCCCcceEEE------EEEEEcChHHCCeEEEEEEECCc
Confidence            466677 567889999999994 4443 1111111 12222222221      56676555567788999997653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.20  E-value=0.0016  Score=39.25  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=39.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCe--EE----Ee--------cCCceE------EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGG--EL----IA--------QGNGQE------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~--~~----~~--------~~~~~~------~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|...+.+.+.+.|++...  ..    ..        ..+...      ....|+|.+++.+|++
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             ceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            5678899999999999877788999997532  10    00        011111      2357888999988875

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.20  E-value=0.011  Score=34.83  Aligned_cols=63  Identities=16%  Similarity=0.108  Sum_probs=35.8

Q ss_pred             eEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.. .+.|.+.|.|++........  ......++.+.+..      .|.+......|...|+|.+.+.
T Consensus        18 ~va~C~s~~gkP~a~ItW~~~~~~~~~~--~~~~~~~g~~tv~S------~l~~~p~~~d~G~~~tC~v~h~   81 (95)
T cd05719          18 TVATCVSANGKPPATISWETTLGGEAET--QSKENPNGTVTVTS------EYRLVPSREANGKELTCVVSHP   81 (95)
T ss_pred             EEEEEECCCCcCCCEEEEEeCCCCccee--EeecCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCc
Confidence            3444554 78999999999941111111  11111222233222      5677666667777899999655

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.20  E-value=0.0069  Score=44.76  Aligned_cols=99  Identities=17%  Similarity=0.240  Sum_probs=65.5

Q ss_pred             eEEEEEcccCCCCCeEEEEEEEeC-C--CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC--eEEE
Q psy16425         52 AWYLHIREVRESDRGWYMCQVNTD-P--MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP--NITW  125 (163)
Q Consensus        52 ~~~L~i~~v~~~d~G~Y~C~~~~~-~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~v~W  125 (163)
                      ...|.|..+....+|.|+=...+. .  .....+.+..+..|.+...+    ..+.+|+...-.|.+..+ |+-  .+.|
T Consensus       181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~----~PvL~Ge~Y~AtC~va~YYPp~Sv~lrW  256 (466)
T PHA03270        181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP----HAVLEGEPFGATCVAANYYPGDRAAFRW  256 (466)
T ss_pred             cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC----CccccCCCceEEEEeeeecCCCceEEEE
Confidence            345999999999999999987433 2  22233456666677766643    247789999999999864 533  5999


Q ss_pred             EECCeEEEecCCce-----EEeceEEEEcchhhh
Q psy16425        126 RREGGELIAQGNGQ-----EDFPFFKRTKKKKKK  154 (163)
Q Consensus       126 ~~~~~~~~~~~~~~-----~~~~~l~i~~v~~~~  154 (163)
                      +.|+.++.......     ..+++.++..++.+.
T Consensus       257 f~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea  290 (466)
T PHA03270        257 FEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEA  290 (466)
T ss_pred             EeCCccccCcceeeeeeEecCCCeeEEEEEeccc
Confidence            99999875432222     133444555555443

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=97.15  E-value=0.00074  Score=46.56  Aligned_cols=52  Identities=19%  Similarity=0.400  Sum_probs=41.8

Q ss_pred             eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425         11 EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus        11 ~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .....+|.++|...++..+        ..+.++.+...|    .|.+.+...+++|.|+|....
T Consensus         7 ~~E~iDP~y~W~GP~g~~l--------~gn~~~nIT~TG----~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen    7 NKELIDPTYLWTGPNGKPL--------SGNSYVNITETG----KLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             hcccCCCceEEECCCCccc--------CCCCeEEEccCc----eEEeeccccccCCceEEEEEE
Confidence            3456778999998777665        455677777766    899999999999999999953

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.08  E-value=0.0029  Score=34.56  Aligned_cols=59  Identities=14%  Similarity=0.348  Sum_probs=37.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      +.|++.|..    ...|.|++ +......              .     +..|-+..+...-.|.|.|.+.+   .....
T Consensus         7 ~~V~L~C~~----~tsi~W~k-G~~~~~~--------------~-----~~tlnLGs~~~DPRG~Y~C~~s~---~~~~~   59 (69)
T cd07691           7 GKVFLKCNG----ATNITWKK-GKEILEV--------------S-----NTLLDLGSRINDPRGTYSCKESE---PNKEK   59 (69)
T ss_pred             ceEEEEecC----CCcEEEec-Ccccccc--------------c-----ccEEeccCcccCCCcceEecCcc---CCCcE
Confidence            468888854    25599999 5443310              0     11677888888899999998854   23334


Q ss_pred             EEEEEc
Q psy16425         83 YLEVVV   88 (163)
Q Consensus        83 ~l~v~~   88 (163)
                      .|.|++
T Consensus        60 ~LQVyY   65 (69)
T cd07691          60 TLQVYY   65 (69)
T ss_pred             EEEEEE
Confidence            555543

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.07  E-value=0.002  Score=37.02  Aligned_cols=26  Identities=31%  Similarity=0.736  Sum_probs=22.0

Q ss_pred             EEEEeEecc-CCCCeEEEEECCeEEEe
Q psy16425        109 VTLKCAASG-SPKPNITWRREGGELIA  134 (163)
Q Consensus       109 ~~l~C~~~~-~p~p~v~W~~~~~~~~~  134 (163)
                      +.|.|.+.| +|++.++|+++|..+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~   28 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKD   28 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcC
Confidence            579999986 78889999999998643

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.07  E-value=0.0023  Score=36.60  Aligned_cols=25  Identities=40%  Similarity=0.783  Sum_probs=21.7

Q ss_pred             EEEEeEecc-CCCCeEEEEECCeEEE
Q psy16425        109 VTLKCAASG-SPKPNITWRREGGELI  133 (163)
Q Consensus       109 ~~l~C~~~~-~p~p~v~W~~~~~~~~  133 (163)
                      +.|.|.+.+ +|.+.++|++++..+.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~   27 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELK   27 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEcc
Confidence            689999975 6999999999998875

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.05  E-value=0.015  Score=36.68  Aligned_cols=66  Identities=14%  Similarity=0.148  Sum_probs=36.7

Q ss_pred             eeEEEeeeecc-CC-CEEEEEEcCCceEE--------eeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          4 RMLIEIGEMLM-AE-STVAWLRVDTQTIL--------TIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         4 ~~~~~~~~~~~-~~-~~i~W~k~~~~~~~--------~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .+.|.|.+.+. |. +.|.|++.+.....        .........++.+.+..      .|.|..-...+.+.|+|.+.
T Consensus        55 ~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s------~L~v~~~~~~~g~~ytC~V~  128 (139)
T cd05771          55 PQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSS------HLTLEPGTEDAGATYTCRVS  128 (139)
T ss_pred             cEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEE------EEEecCCccCCCCEEEEEEE
Confidence            46778888775 43 58999995422110        00011112233333332      56676665566779999996


Q ss_pred             eC
Q psy16425         74 TD   75 (163)
Q Consensus        74 ~~   75 (163)
                      +.
T Consensus       129 H~  130 (139)
T cd05771         129 HV  130 (139)
T ss_pred             cC
Confidence            54

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.04  E-value=0.0016  Score=38.51  Aligned_cols=30  Identities=33%  Similarity=0.791  Sum_probs=25.0

Q ss_pred             cEEEeCCCcEEE-EeEec-cCCCCeEEEEECC
Q psy16425        100 DMVIREGSNVTL-KCAAS-GSPKPNITWRREG  129 (163)
Q Consensus       100 ~~~~~~g~~~~l-~C~~~-~~p~p~v~W~~~~  129 (163)
                      ...+.+|+.+.+ .|.+. |.|+++|+|+.+.
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~   41 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNV   41 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCC
Confidence            556778898888 99985 7899999999863

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.04  E-value=0.0013  Score=38.65  Aligned_cols=57  Identities=18%  Similarity=0.115  Sum_probs=39.4

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec----CCceEEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ----GNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~----~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|++++|.|.... +.-.+.|++++......    .........|.|..++.+|++.
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~   69 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGT   69 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEE
Confidence            445778999999998765 45579999988653211    1111234578999999988764

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.03  E-value=0.024  Score=33.42  Aligned_cols=63  Identities=13%  Similarity=0.115  Sum_probs=36.5

Q ss_pred             eEEEe-eeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEI-GEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~-~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.| ...+-|.+.|.|++........  ......++++.+..      .|.+......|...|+|.+.+.
T Consensus        18 ~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~S------~l~~~P~~~d~Gk~ltC~v~h~   81 (95)
T cd07703          18 PVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVTS------EYSLVPTPEANGKEVTCKVEHE   81 (95)
T ss_pred             EEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCc
Confidence            34445 4568899999999842211111  11112233333332      5777666667778899999665

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.01  E-value=0.013  Score=34.83  Aligned_cols=64  Identities=19%  Similarity=0.334  Sum_probs=34.9

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.+...-.+...|.|++ ++..+...   .......++.+....      .|.+..-...+...|+|.+...
T Consensus        22 L~C~~~gfyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgty~~~s------~L~v~~~~w~~~~~~sC~V~H~   88 (100)
T cd07699          22 LVCLINDFYPGFATVQWKV-DGATVSSGVQTSTTEQQSDNTYSLSS------YLTLTKSDWNKHKVYTCEVTHE   88 (100)
T ss_pred             EEEEEEeEECCCCEEEEEE-CCEECcccEeccccEECCCCCEEEEE------EEEEcHHHhCCCCeEEEEEEec
Confidence            3344444444478899999 55554211   111122234444332      5666655555567899999654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.01  E-value=0.025  Score=33.20  Aligned_cols=61  Identities=10%  Similarity=0.171  Sum_probs=33.6

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ++|.+..+-.+...|.|++ ++..+...  .......+..++...      .|.+   .+.+...|+|.+...
T Consensus        20 L~C~a~gFyP~~i~v~W~~-dg~~~~~~~~~~~~p~~d~tyq~~s------~l~~---~~~~~~~ysC~V~H~   82 (93)
T cd05770          20 LNCYVTGFHPPDIEIRLLK-NGVKIPKVEQSDLSFSKDWTFYLLK------STEF---TPTKGDEYACRVRHN   82 (93)
T ss_pred             EEEEEEEEeCCCCEEEEEE-CCEECCCcEECcEEECCCCCEEEEE------EEEE---CCCCCCeEEEEEEEC
Confidence            4445555556678889999 66554211  111122333333222      3333   456778899999654

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.98  E-value=0.027  Score=33.11  Aligned_cols=62  Identities=13%  Similarity=0.240  Sum_probs=33.8

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ++|.+..+-.+...|.|.+ ++..+..   ........++.+....      .|.+.   +.+...|+|.+...+
T Consensus        20 L~C~a~gFyP~~I~v~W~~-~g~~~~~~~~~~~~~~~~Dgty~~~s------~L~v~---~~~~~~ytC~V~H~~   84 (94)
T cd05767          20 LICFVDNFFPPVLNVTWLK-NGVPVTDGVSETRYYPRQDLSFQKFS------YLNFT---PEEGDIYSCIVEHWG   84 (94)
T ss_pred             EEEEEEEEECCcCEEEEEE-CCeEccCceEEeeeEeCCCCcEEEEE------EEEEE---CCCCCeEEEEEEeCC
Confidence            4444445555668889999 5555321   1122223344444332      45554   345678999996543

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=96.96  E-value=0.0021  Score=37.11  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             CCcEEEEeEeccCC--CCeEEEEECCeEEEecC--C---c-----eEEeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSP--KPNITWRREGGELIAQG--N---G-----QEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p--~p~v~W~~~~~~~~~~~--~---~-----~~~~~~l~i~~v~~~~~~  156 (163)
                      |+++.|.|.+.+.|  ...+.|...+..+....  .   .     ....+.|.|.+++.+|.+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG   63 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLG   63 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCE
Confidence            78899999998755  45789988775431110  0   0     123568999999998875

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.94  E-value=0.018  Score=43.08  Aligned_cols=78  Identities=17%  Similarity=0.225  Sum_probs=56.2

Q ss_pred             eEEEEEcccCCCCCeEEEEEEEeC-CC--ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC--eEEE
Q psy16425         52 AWYLHIREVRESDRGWYMCQVNTD-PM--KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP--NITW  125 (163)
Q Consensus        52 ~~~L~i~~v~~~d~G~Y~C~~~~~-~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~v~W  125 (163)
                      ++.|.|..+...++|.|+=...+. +.  ....+.+....+|.+...+    ..+.+|+...-.|.+..+ |+-  .+.|
T Consensus       197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~----~PvL~Ge~y~A~C~aa~YYPp~Sv~~rW  272 (486)
T PHA03273        197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV----HPSLKGENYRAVCVVASYFPHSSVKLRW  272 (486)
T ss_pred             ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC----CccccCCCceEEEEeeeecCCCceEEEE
Confidence            367999999999999998665332 22  2233344446677766643    347889999999999864 532  5999


Q ss_pred             EECCeEEE
Q psy16425        126 RREGGELI  133 (163)
Q Consensus       126 ~~~~~~~~  133 (163)
                      +.|+.++.
T Consensus       273 f~dg~~V~  280 (486)
T PHA03273        273 YKNAKEVD  280 (486)
T ss_pred             EeCCeecc
Confidence            99999886

>KOG3515|consensus

Probab=96.93  E-value=0.0056  Score=48.58  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=76.4

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC--Cce
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP--MKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~--~~~   79 (163)
                      .+|-|.|...+. |.+.+.||+.+....           +|.......    .|.......+.-+.|.|++.+..  ...
T Consensus        23 ~~v~l~C~v~~~pp~~~~eW~h~~~~~~-----------~~~~~~~~~----~~~~~~~~~~~~~~~~c~a~ns~~~~~~   87 (741)
T KOG3515|consen   23 EDVPLPCRVNSNPPEIDVEWYHSTSGEH-----------GRYATIADP----TLVTTGDVRDTVAELNCRAFNSVGMPSR   87 (741)
T ss_pred             CcceeeeecCCCCCCcceEEEecCcccc-----------cccccccCC----ceeeecchhhhhhhhhhhhcccccCcee
Confidence            468888886554 557899999543221           222222222    67888888888899999996652  233


Q ss_pred             EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec--cCCCCeEEEEECCeEEEec
Q psy16425         80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS--GSPKPNITWRREGGELIAQ  135 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~--~~p~p~v~W~~~~~~~~~~  135 (163)
                      ....+.+.++|......  .......+..+.+.|.+.  +.|.+.+.|..++......
T Consensus        88 ~~~~l~v~~~pa~~~~~--~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~  143 (741)
T KOG3515|consen   88 CPMILDVDYPPACLPEL--GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNA  143 (741)
T ss_pred             cceeeccccCccccccc--cchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecc
Confidence            44556777776544422  234456788899999654  5678899999988765444

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.90  E-value=0.017  Score=35.15  Aligned_cols=69  Identities=7%  Similarity=0.131  Sum_probs=43.5

Q ss_pred             eeEEEeee--eccCC-CEEEEEEcCCceEEee------eeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEE
Q psy16425          4 RMLIEIGE--MLMAE-STVAWLRVDTQTILTI------QTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         4 ~~~~~~~~--~~~~~-~~i~W~k~~~~~~~~~------~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .+.|.|..  ..... -.+.|+|+....+...      +.......+|+.+..+. ...++|.|.+++.+|.+.|.|..
T Consensus        15 sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~   93 (115)
T cd05721          15 AASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKI   93 (115)
T ss_pred             CEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence            46666755  33444 5789999643322111      11111234566666555 36789999999999999999976

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.90  E-value=0.0074  Score=35.59  Aligned_cols=58  Identities=12%  Similarity=0.111  Sum_probs=38.7

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEE--------ecCCceE-----EeceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELI--------AQGNGQE-----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~--------~~~~~~~-----~~~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+++.|.|.+.+.....+.|++.+..+.        .+.+...     ..-.|+|.++..+|.+
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G   75 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEG   75 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCE
Confidence            35778899999999999987666677876664432        1112111     1235888888888764

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=96.89  E-value=0.0031  Score=38.15  Aligned_cols=30  Identities=27%  Similarity=0.627  Sum_probs=25.3

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREG  129 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~  129 (163)
                      ....+.+|++++|.|...+ +.+.+.|++..
T Consensus         6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~   35 (110)
T cd05899           6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQD   35 (110)
T ss_pred             CceEEcCCCcEEEEEEECC-CCCEEEEEEEC
Confidence            3567889999999999987 77889999864

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.79  E-value=0.034  Score=32.70  Aligned_cols=62  Identities=18%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             eEEEeee--eccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGE--MLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~--~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +.|.|.+  .-.+...+.|++ ++..+..   ........++.+....      .|.+   ...+...|+|.+...+
T Consensus        17 ~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgTy~~~s------~L~~---~~~~~~~ysC~V~H~~   83 (94)
T cd05766          17 HLLVCHVWGFYPPEITVKWFK-NGQEETEGVVSTELIPNGDWTYQILV------MLET---TPSRGDTYTCVVEHSS   83 (94)
T ss_pred             eEEEEEEeeecCCCCEEEEEE-CCeecCCCceecceEECCCCcEEEEE------EEEE---cCCCCCEEEEEEEeCC
Confidence            4444544  444556889999 5554321   1111122223333222      3433   3346678999996553

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.77  E-value=0.0051  Score=37.51  Aligned_cols=30  Identities=30%  Similarity=0.583  Sum_probs=25.3

Q ss_pred             CcEEEeCCCcEEEEeEecc--CCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASG--SPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~--~p~p~v~W~~~  128 (163)
                      ....+.+|++++|.|.+.+  .+.+.+.|++.
T Consensus         6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq   37 (116)
T cd04982           6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQ   37 (116)
T ss_pred             CeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence            3567888999999999877  67788999985

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.76  E-value=0.043  Score=32.09  Aligned_cols=64  Identities=14%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             eeEEEeeeecc-C-CCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGEMLM-A-ESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~~~~-~-~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .+.|.|.+.+. | ...|.|++.+.......  .......++.+....      .|.+.   ..+.+.|+|.+.+.+
T Consensus        16 ~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s------~l~v~---~~~~~~ytC~V~H~~   83 (93)
T cd07698          16 SLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWV------TLEVP---PEDKARYSCRVEHSG   83 (93)
T ss_pred             cEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEE------EEEEC---CCCCCEEEEEEEeCC
Confidence            45666666664 3 35899999432221110  111111122222111      33343   347889999996553

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.74  E-value=0.026  Score=33.34  Aligned_cols=65  Identities=15%  Similarity=0.207  Sum_probs=31.8

Q ss_pred             eEEEeeee-ccCCCEEEEEEcCCceEEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEM-LMAESTVAWLRVDTQTILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~-~~~~~~i~W~k~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.+... ..+...|.|.++++...... .......++.+....      .|.+..-...+...|+|.+...
T Consensus        19 LtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s------~l~v~~~~w~~g~~ysC~V~H~   85 (96)
T cd07696          19 LTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTS------TLNVSTDDWISGDTFQCKVTHP   85 (96)
T ss_pred             EEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEE------EEEeCHHHccCCCcEEEEEECC
Confidence            34444444 44667889999544332111 111112233333222      4555544333455799999654

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.74  E-value=0.039  Score=31.43  Aligned_cols=63  Identities=16%  Similarity=0.266  Sum_probs=34.8

Q ss_pred             eeEEEeee--eccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGE--MLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~--~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .+.|.|..  .......|.|++ ++..+..   ........++.+....      .|.+.   ..+...|+|.+...+
T Consensus        10 ~~~L~C~v~~f~P~~i~v~W~~-~~~~~~~~~~~~~~~~~~dgty~~~s------~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen   10 SVTLTCLVSGFYPKDITVTWLK-NGKEVTEGVETTPPPPNSDGTYSVTS------SLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             EEEEEEEEEEEBSSTEEEEEEE-TTEEETTTEEEEEEEEETTSEEEEEE------EEEEE---TTTTGGEEEEEEETT
T ss_pred             CEEEEEEEEEEECCCcEEEEEe-ccceeeeeeeecccccccccceeeeE------EEEec---CCCCCEEEEEEEECC
Confidence            34455544  444566899999 5554321   1111113445555443      45555   555668999996553

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=96.65  E-value=0.0054  Score=36.49  Aligned_cols=28  Identities=43%  Similarity=0.710  Sum_probs=23.0

Q ss_pred             EEeCCCcEEEEeEeccC-CCCeEEEEECC
Q psy16425        102 VIREGSNVTLKCAASGS-PKPNITWRREG  129 (163)
Q Consensus       102 ~~~~g~~~~l~C~~~~~-p~p~v~W~~~~  129 (163)
                      .+.+|++++|.|..... +...+.|++..
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~   30 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQK   30 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence            46789999999999876 66789999853

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00098 IgC Immunoglobulin Constant domain

Probab=96.65  E-value=0.0035  Score=36.62  Aligned_cols=32  Identities=41%  Similarity=0.725  Sum_probs=26.1

Q ss_pred             eCCCcEEEEeEeccC-CC-CeEEEEECCeEEEec
Q psy16425        104 REGSNVTLKCAASGS-PK-PNITWRREGGELIAQ  135 (163)
Q Consensus       104 ~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~~~  135 (163)
                      ..|+.+.|.|.+.|+ |. +.++|++++..+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~   44 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSG   44 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCc
Confidence            358899999999986 64 589999999887544

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.59  E-value=0.028  Score=41.52  Aligned_cols=81  Identities=20%  Similarity=0.374  Sum_probs=54.8

Q ss_pred             ceEEEEEcccCCCCCeEEEEEEEeC---CCceEeEEEEEEc-CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC--eE
Q psy16425         51 KAWYLHIREVRESDRGWYMCQVNTD---PMKSQVGYLEVVV-PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP--NI  123 (163)
Q Consensus        51 ~~~~L~i~~v~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~v  123 (163)
                      .+..|.|.++...|+|.|.....+.   ........+.+.+ +|.+...+    ..+.+|+.....|.+..+ |+-  .+
T Consensus       205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a----~PVL~Ge~YkAtC~vAnYYPP~Svrl  280 (490)
T PHA03271        205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA----PPVLSGENYKASCIVRHFYPPGSVYV  280 (490)
T ss_pred             ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC----CccccCCCceEEEEeeeecCCCceEE
Confidence            4568999999999999775555332   2223334445544 44455533    237789999999999864 432  59


Q ss_pred             EEEECCeEEEec
Q psy16425        124 TWRREGGELIAQ  135 (163)
Q Consensus       124 ~W~~~~~~~~~~  135 (163)
                      .|+.||.+....
T Consensus       281 rWf~nG~~V~~~  292 (490)
T PHA03271        281 SWRQNGNIATPR  292 (490)
T ss_pred             EEEeCCccccCc
Confidence            999999876444

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.55  E-value=0.0057  Score=35.28  Aligned_cols=54  Identities=19%  Similarity=0.229  Sum_probs=36.9

Q ss_pred             EEEeCCCcEEEEeEecc--CCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASG--SPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~--~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ..+..|++++|.|.+..  .|.+.|.|...+......  ...+...|.+.+++..|++
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~--~~~~~ktL~~~qv~~qdSG   64 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI--LNQDKKTLNLVQLGPNDSG   64 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee--ccCCccEEEeceeCcccCC
Confidence            35778999999999965  345599999765542211  1135566788888877765

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=96.53  E-value=0.058  Score=32.78  Aligned_cols=64  Identities=17%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             eEEEeeeec--cCCCEEEEEEcCCceEEeeeeeE-EecCC-eEEEEeCCCceEEEEEcccCCCCC-eEEEEEEEeCC
Q psy16425          5 MLIEIGEML--MAESTVAWLRVDTQTILTIQTHV-ITKNH-RIGVTHSETKAWYLHIREVRESDR-GWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~~~~-~~~~~-r~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~~~~~~   76 (163)
                      +.|.|.+.+  .+...|.|++ ++..+....... ...++ .+....      .|.+.. ...|. ..|+|.+.+.+
T Consensus        24 ~tL~C~a~gF~P~~i~v~W~k-ng~~~~~~~~~~~p~~d~~ty~~~S------~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          24 VNFTCSAHGFSPRDITVKWLK-NGNELSAEQPNITPEGDSVSYNVTS------TVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             EEEEEEEeeEeCCCCEEEEEE-CCEECcccccceeeCCCCCcEEEEE------EEEEEC-ccccccCceEEEEEeCC
Confidence            455565544  3457999999 665543211111 11221 222221      444553 33443 35999996653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.44  E-value=0.079  Score=31.30  Aligned_cols=64  Identities=11%  Similarity=0.128  Sum_probs=31.6

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .++|.+...-.+...|.|.+ ++..+...  ........+.|....      .|.+..-.  ....|+|.+...+
T Consensus        20 tL~C~a~gFyP~~I~v~W~k-ng~~~~~~~~~~~~~~~~dty~~~S------~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          20 IYLCLLENFFPDVIQVHWRE-GNSPSILGSQKSEKDKDNDVYSTTS------WLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             EEEEEEEEEeCCCeEEEEEE-CCEECcCCeEeccEecCCCEEEEEE------EEEECchh--CCCeEEEEEEECC
Confidence            34444445555677889999 55543211  111111222333222      45554332  2345999996654

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.40  E-value=0.04  Score=32.81  Aligned_cols=63  Identities=14%  Similarity=0.160  Sum_probs=33.6

Q ss_pred             eeEEEeeeec-cCCCE--EEEEEcCCceEEeeeeeEEec-CCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGEML-MAEST--VAWLRVDTQTILTIQTHVITK-NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~~~-~~~~~--i~W~k~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ++.|.|...+ .|...  |.||+ ++..+...   .+.. ...     ......+|.+..-+..|...|+|++...
T Consensus        18 ~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~~~---~~~~~~~~-----~~~~~stlt~~~~r~D~g~~~sC~A~l~   84 (100)
T cd05755          18 NYTLQCDVPGVAPRQNLTVVLLR-GNETLSRQ---PFGDNTKS-----PVNAPATITITVDREDHGANFSCETELD   84 (100)
T ss_pred             cEEEEEEEcCcCCCCcEEEEEee-CCEEcccc---eeccccCC-----CceeEEEEEEecchhhCCcEEEEEEEec
Confidence            5677777655 45554  79999 55544211   0000 000     0012236676655555556899999644

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.32  E-value=0.015  Score=34.00  Aligned_cols=26  Identities=38%  Similarity=0.925  Sum_probs=21.6

Q ss_pred             CCcEEEEeEeccC-CCC-eEEEEECCeE
Q psy16425        106 GSNVTLKCAASGS-PKP-NITWRREGGE  131 (163)
Q Consensus       106 g~~~~l~C~~~~~-p~p-~v~W~~~~~~  131 (163)
                      ++.+.|.|.+.|+ |++ .+.|.+++..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~   41 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGED   41 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEE
Confidence            6789999999995 554 8999999863

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=96.26  E-value=0.0051  Score=37.00  Aligned_cols=55  Identities=15%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             EEeCCCcEEEEeEeccCCCCeEEEEECCe-----EEEe---c-----------CCce-EEeceEEEEcchhhhHh
Q psy16425        102 VIREGSNVTLKCAASGSPKPNITWRREGG-----ELIA---Q-----------GNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       102 ~~~~g~~~~l~C~~~~~p~p~v~W~~~~~-----~~~~---~-----------~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      .+.+|+++.|.|.....+...++|++...     .+..   .           .+.. ..++.|.|.+|+++|++
T Consensus         9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G   83 (105)
T cd05774           9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG   83 (105)
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence            46689999999875433444899999632     1100   0           1111 14578999999999976

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.22  E-value=0.046  Score=32.66  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=31.6

Q ss_pred             eEEEeeeec--cCCCEEEEEEcCCceEEeee--eeEEec----CCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEML--MAESTVAWLRVDTQTILTIQ--THVITK----NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~--~~~~~~----~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|.+.+  .+...|.|++ ++..+....  ......    ++.+....      .|.|..-...+...|+|.+...
T Consensus        19 ~tL~C~a~gFyP~~i~v~W~k-~g~~~~~~~~~~~~~~~~~~~dgTy~~~s------~L~v~~~~w~~~~~ytC~V~H~   90 (102)
T cd05768          19 ATLTCLVKGFSPSDIFVKWLQ-NGQPLSKQKYVTTAPMQEPGGNESYFLYS------KLTVSAEDWNAGDVFTCVVGHE   90 (102)
T ss_pred             eEEEEEEeeEeCCCCEEEEEE-CCEECCcccccccCcccccCCCCeEEEEE------EEEEcHHHhcCCCcEEEEeEeC
Confidence            455555544  4556789999 555432111  000010    12333222      4555443334556899999654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.21  E-value=0.0081  Score=35.43  Aligned_cols=21  Identities=29%  Similarity=0.714  Sum_probs=18.1

Q ss_pred             cEEEEeEec-cCCCCeEEEEEC
Q psy16425        108 NVTLKCAAS-GSPKPNITWRRE  128 (163)
Q Consensus       108 ~~~l~C~~~-~~p~p~v~W~~~  128 (163)
                      ...+.|.+. |.|++.|+|+++
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~   38 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSST   38 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcC
Confidence            467899886 789999999987

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=96.19  E-value=0.019  Score=37.94  Aligned_cols=57  Identities=14%  Similarity=0.233  Sum_probs=40.0

Q ss_pred             cEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEE----------e--cCCceE-----EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAAS-GSPKPNITWRREGGELI----------A--QGNGQE-----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~----------~--~~~~~~-----~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|... +...+.+.|++....+.          +  .++...     ....|+|.+|+++|.+
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeG   98 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNG   98 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCe
Confidence            45688999999999984 66678899999743221          0  011111     4478899999999975

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=96.17  E-value=0.0046  Score=35.89  Aligned_cols=51  Identities=18%  Similarity=0.194  Sum_probs=34.6

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEe--------c----------CCce-EEeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIA--------Q----------GNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~--------~----------~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      |++|+|.|.....+...+.|+++......        .          .+.. ..++.|+|.+++.+|++
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG   70 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSG   70 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcE
Confidence            78999999987766668999987532100        0          0000 13478999999999875

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.15  E-value=0.024  Score=33.35  Aligned_cols=31  Identities=23%  Similarity=0.411  Sum_probs=24.8

Q ss_pred             eCCCcEEEEeEecc-CCCC-eEEEEECCeEEEe
Q psy16425        104 REGSNVTLKCAASG-SPKP-NITWRREGGELIA  134 (163)
Q Consensus       104 ~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~  134 (163)
                      .+|+.++|.|.+.| +|+. .++|+++|..+..
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~   44 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE   44 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence            35788999999998 5654 7999999988644

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.15  E-value=0.018  Score=34.34  Aligned_cols=43  Identities=23%  Similarity=0.340  Sum_probs=28.4

Q ss_pred             CeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeEEEEE
Q psy16425         41 HRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEV   86 (163)
Q Consensus        41 ~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~l~v   86 (163)
                      .|+.+..   .+++|.|..+++.|+|.|.-++.+..+......+.|
T Consensus        62 ~r~~F~~---enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqV  104 (108)
T PF11465_consen   62 NRFNFTS---ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQV  104 (108)
T ss_dssp             HHEEEET---TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEE
T ss_pred             ceEeeec---cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEE
Confidence            4555544   356999999999999999999977644434444443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=96.12  E-value=0.0067  Score=36.13  Aligned_cols=31  Identities=19%  Similarity=0.563  Sum_probs=24.6

Q ss_pred             EeCCCcEEEEeEecc-CC-CCeEEEEECCeEEE
Q psy16425        103 IREGSNVTLKCAASG-SP-KPNITWRREGGELI  133 (163)
Q Consensus       103 ~~~g~~~~l~C~~~~-~p-~p~v~W~~~~~~~~  133 (163)
                      ...++.+.|.|.+.| +| ...+.|++||..+.
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~   46 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVS   46 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence            335678999999998 56 45799999998874

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=95.95  E-value=0.0088  Score=36.61  Aligned_cols=31  Identities=32%  Similarity=0.720  Sum_probs=24.3

Q ss_pred             eCCCcEEEEeEecc-CCCC-eEEEEECCeEEEe
Q psy16425        104 REGSNVTLKCAASG-SPKP-NITWRREGGELIA  134 (163)
Q Consensus       104 ~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~  134 (163)
                      .+++.+.|.|.+.+ +|.. .++|++|+..+..
T Consensus        16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~   48 (115)
T cd05769          16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVTD   48 (115)
T ss_pred             ccCCCcEEEEEEEeEeCCCcEEEEEECCEECCC
Confidence            35677999999998 5653 7999999987643

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=95.91  E-value=0.022  Score=33.48  Aligned_cols=56  Identities=16%  Similarity=0.229  Sum_probs=35.6

Q ss_pred             EEEeCCCcEEEEeEecc-CCCCeEEEEECCeE----EEe---------cCCceE------EeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASG-SPKPNITWRREGGE----LIA---------QGNGQE------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~----~~~---------~~~~~~------~~~~l~i~~v~~~~~~  156 (163)
                      ..+.+|+++.|.|.... .+...+.|++....    +..         ..+...      ....|+|.+++.+|++
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG   77 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAG   77 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCE
Confidence            35678999999999765 35667999986421    110         011111      2246888899988875

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.80  E-value=0.1  Score=30.99  Aligned_cols=65  Identities=8%  Similarity=0.034  Sum_probs=30.8

Q ss_pred             eeEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .+++.+.... .....|.|.+.++ .-..........++.|.+..      .|.+..-.-.....|+|.+.+.
T Consensus        23 tLtClV~~f~~P~~i~V~W~~~g~-~~~~~t~~~~~~dgTys~~S------~L~v~~~~W~~g~~ytC~V~H~   88 (99)
T cd04986          23 SLTCTLSGLRDPEGAVFTWTPSGG-KEAVQTSAESDQCGCYSVSS------VLPGCAEEWNKGEPFACTVTHP   88 (99)
T ss_pred             EEEEEEeccCCCCCeEEEEEECCc-cCcEEcCcccCCCCCEEEEE------EEEeCHHHhcCCCeEEEEEECC
Confidence            3444444444 4468899999443 21111111112233333332      4555532223334699999654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=95.77  E-value=0.051  Score=29.50  Aligned_cols=46  Identities=15%  Similarity=0.255  Sum_probs=26.9

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .|.|.|....   ..|.|++.+ ...        ...+.           .+.+.+-. +++|.|+|.+.
T Consensus         9 tVtlTCP~~~---~~i~W~~n~-~~~--------~g~~~-----------~~~~~~~~-e~~G~Y~C~~~   54 (65)
T cd07692           9 TVTVTCPLSG---DDIKWKKND-QVS--------QGSDE-----------KYLSLNHF-SSSGYYHCTAD   54 (65)
T ss_pred             EEEEECCCCC---CCceEEeCC-ccC--------CCCCc-----------eEEeeccC-CCCceEEEEeC
Confidence            5778885442   228999943 322        11111           23444444 88999999983

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.75  E-value=0.043  Score=32.41  Aligned_cols=30  Identities=33%  Similarity=0.646  Sum_probs=23.2

Q ss_pred             EeCCCcEEEEeEeccC--CC-CeEEEEECCeEE
Q psy16425        103 IREGSNVTLKCAASGS--PK-PNITWRREGGEL  132 (163)
Q Consensus       103 ~~~g~~~~l~C~~~~~--p~-p~v~W~~~~~~~  132 (163)
                      +..|+.+.|.|.+.|.  |+ ..++|.++++..
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~   43 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP   43 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence            4458899999999987  43 368999997543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.73  E-value=0.03  Score=32.92  Aligned_cols=28  Identities=32%  Similarity=0.586  Sum_probs=22.3

Q ss_pred             CCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425        106 GSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus       106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      +....|.|.+.| +|. ..++|.+||..+.
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~   44 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVT   44 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEECCeEcc
Confidence            556799999998 564 4689999998764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>smart00407 IGc1 Immunoglobulin C-Type

Probab=95.62  E-value=0.054  Score=30.26  Aligned_cols=24  Identities=46%  Similarity=0.839  Sum_probs=19.7

Q ss_pred             EEEEeEeccC-CC-CeEEEEECCeEE
Q psy16425        109 VTLKCAASGS-PK-PNITWRREGGEL  132 (163)
Q Consensus       109 ~~l~C~~~~~-p~-p~v~W~~~~~~~  132 (163)
                      +.|.|.+.|+ |+ ..+.|++++.++
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~   27 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEV   27 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEEC
Confidence            6899999984 65 589999999863

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.62  E-value=0.019  Score=33.88  Aligned_cols=21  Identities=24%  Similarity=0.711  Sum_probs=18.2

Q ss_pred             cEEEEeEec-cCCCCeEEEEEC
Q psy16425        108 NVTLKCAAS-GSPKPNITWRRE  128 (163)
Q Consensus       108 ~~~l~C~~~-~~p~p~v~W~~~  128 (163)
                      ...+.|.+. |+|++.|+|+++
T Consensus        17 ~~va~C~s~~gkP~a~ItW~~~   38 (95)
T cd05719          17 VTVATCVSANGKPPATISWETT   38 (95)
T ss_pred             cEEEEEECCCCcCCCEEEEEeC
Confidence            467899985 799999999997

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.50  E-value=0.013  Score=35.08  Aligned_cols=29  Identities=28%  Similarity=0.538  Sum_probs=23.2

Q ss_pred             CCCcEEEEeEeccC-CCC-eEEEEECCeEEE
Q psy16425        105 EGSNVTLKCAASGS-PKP-NITWRREGGELI  133 (163)
Q Consensus       105 ~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~  133 (163)
                      .|+.+.|.|.+.|+ |.. .++|++++..+.
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~   45 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLS   45 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence            46789999999984 543 689999998764

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=95.49  E-value=0.3  Score=29.91  Aligned_cols=65  Identities=9%  Similarity=0.133  Sum_probs=32.8

Q ss_pred             eEEEeeeec--cCCCEEEEEEcCCceEEeeee---eEEecC-CeEEEEeCCCceEEEEEcccCCCC-CeEEEEEEEeCC
Q psy16425          5 MLIEIGEML--MAESTVAWLRVDTQTILTIQT---HVITKN-HRIGVTHSETKAWYLHIREVRESD-RGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~~---~~~~~~-~r~~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~~~~   76 (163)
                      +.|.|.+.+  .....|.|++ ++..+.....   .....+ +.+....      .|.|......+ ...|+|.+...+
T Consensus        21 ~tL~Cla~gFyP~~I~V~W~k-ng~~l~~g~~~~~~~~~~~~gTYs~~S------~L~v~~~~w~~~~~~ytC~V~H~g   92 (115)
T cd05769          21 ATLVCLATGFYPDHVSLSWKV-NGKEVTDGVATDPQALRENTSTYSISS------RLRVSATEWFNPRNTFTCIVQFYG   92 (115)
T ss_pred             cEEEEEEEeEeCCCcEEEEEE-CCEECCCCcccccceecCCCCeEEEEE------EEEEChHHhccCCCeEEEEEEEeC
Confidence            444554443  4456899999 5544321100   011111 2233222      56666554433 568999996554

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=95.39  E-value=0.025  Score=33.42  Aligned_cols=52  Identities=17%  Similarity=0.103  Sum_probs=34.5

Q ss_pred             CCCcEEEEeEecc-CCCCeEEEEECCeEEEecCC-----------------ceE--EeceEEEEcchhhhHh
Q psy16425        105 EGSNVTLKCAASG-SPKPNITWRREGGELIAQGN-----------------GQE--DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~-----------------~~~--~~~~l~i~~v~~~~~~  156 (163)
                      .|++|+|.|.... .....+.|++....+.....                 ...  ....|+|.+++.+|++
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG   74 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAG   74 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCE
Confidence            5999999998754 44557999987543321111                 000  2367999999999875

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.38  E-value=0.22  Score=29.36  Aligned_cols=64  Identities=9%  Similarity=0.123  Sum_probs=31.8

Q ss_pred             eEEEeeeec--cCCCEEEEEEcCCceEEee--e-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEML--MAESTVAWLRVDTQTILTI--Q-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~--~~~~~i~W~k~~~~~~~~~--~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +.|.|.+.+  .+...|.|++ ++.. ...  . ......++.+....      .|.+....-.....|+|.+...+
T Consensus        19 ~~L~C~a~gFyP~~i~vtW~k-~g~~-~~~~~~~~~~~~~dgty~~~s------~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          19 VTLGCLATGFLPEPVTFTWNS-GSNS-TSGVKTYPAVLQSGGLYTASS------QLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             EEEEEEEeeEECCCcEEEEeE-CCEE-CCCcEECCCEeCCCCCEEEEE------EEEEeHHHcCCCCcEEEEEEeCC
Confidence            455555544  4567889999 5554 111  0 01111133333222      45555433223567999996543

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=95.32  E-value=0.034  Score=32.62  Aligned_cols=29  Identities=24%  Similarity=0.473  Sum_probs=22.8

Q ss_pred             CCCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425        105 EGSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      .|....|.|.+.| +|+ ..++|.+||..+.
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~   44 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP   44 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence            4666799999998 453 3689999998864

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=95.13  E-value=0.065  Score=32.02  Aligned_cols=29  Identities=24%  Similarity=0.567  Sum_probs=23.9

Q ss_pred             cEEEeCCCcEEEEeEeccCC-CCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSP-KPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p-~p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.+.. ...+.|++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq   38 (106)
T cd04980           9 TLSVSPGESATISCKASQSVSSNYLAWYQQ   38 (106)
T ss_pred             cEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence            56788999999999987655 567999975

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=95.09  E-value=0.071  Score=31.99  Aligned_cols=28  Identities=29%  Similarity=0.580  Sum_probs=21.5

Q ss_pred             EEeCCCcEEEEeEeccC-CCCeEEEEECC
Q psy16425        102 VIREGSNVTLKCAASGS-PKPNITWRREG  129 (163)
Q Consensus       102 ~~~~g~~~~l~C~~~~~-p~p~v~W~~~~  129 (163)
                      .+.+|++++|.|...+. ....+.|++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~   30 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWR   30 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEEC
Confidence            46789999999998753 34579999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.01  E-value=0.033  Score=32.89  Aligned_cols=28  Identities=18%  Similarity=0.367  Sum_probs=22.3

Q ss_pred             CCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425        106 GSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus       106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      +..++|.|.+.+ +|. ..++|.++|..+.
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~   45 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGNSPSI   45 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence            567899999998 454 3689999998753

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=94.98  E-value=0.11  Score=30.50  Aligned_cols=27  Identities=26%  Similarity=0.604  Sum_probs=22.2

Q ss_pred             CCcEEEEeEecc-CCC-CeEEEEECCeEE
Q psy16425        106 GSNVTLKCAASG-SPK-PNITWRREGGEL  132 (163)
Q Consensus       106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~  132 (163)
                      .+.+.|.|.+.| +|. ..++|.++|..+
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~   42 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLVDGQVA   42 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence            466899999998 565 579999999876

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=94.88  E-value=0.11  Score=38.49  Aligned_cols=43  Identities=19%  Similarity=0.218  Sum_probs=37.3

Q ss_pred             ceEEEEEcccCCCCCeEEEEEEEeCCCceEeEEEEEEcCCccc
Q psy16425         51 KAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDIL   93 (163)
Q Consensus        51 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~   93 (163)
                      ...++.+.|++..|+|.|.|.+.-....+.+-.+.+.+.|.+.
T Consensus        79 keYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPKId  121 (500)
T PHA02914         79 KEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPKID  121 (500)
T ss_pred             ceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEcccee
Confidence            4578999999999999999999777777888889999888775

>cd00096 Ig Immunoglobulin domain

Probab=94.78  E-value=0.063  Score=28.24  Aligned_cols=48  Identities=29%  Similarity=0.448  Sum_probs=32.6

Q ss_pred             EEEEeEeccCCCCeEEEEECCeEEEecCC--------ceEEeceEEEEcchhhhHh
Q psy16425        109 VTLKCAASGSPKPNITWRREGGELIAQGN--------GQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~--------~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|.+.+.+.+.+.|++++........        .......|.|.+++.+|.+
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   56 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSG   56 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCc
Confidence            36899998877888999998866433221        1234566788877776654

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=94.68  E-value=0.12  Score=31.38  Aligned_cols=52  Identities=15%  Similarity=0.241  Sum_probs=32.0

Q ss_pred             CCCcEEEEeEeccCC------------CCeEEEEECC--e--EEEe----------c--CCce-------EEeceEEEEc
Q psy16425        105 EGSNVTLKCAASGSP------------KPNITWRREG--G--ELIA----------Q--GNGQ-------EDFPFFKRTK  149 (163)
Q Consensus       105 ~g~~~~l~C~~~~~p------------~p~v~W~~~~--~--~~~~----------~--~~~~-------~~~~~l~i~~  149 (163)
                      .|++++|.|......            .+.|.|++..  .  .+..          .  ++..       .....|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            388999999886432            3589999742  1  1110          0  1111       1356889999


Q ss_pred             chhhhHh
Q psy16425        150 KKKKKKK  156 (163)
Q Consensus       150 v~~~~~~  156 (163)
                      ++..|.+
T Consensus        81 l~~sDsG   87 (112)
T cd05900          81 LRSNDSG   87 (112)
T ss_pred             cccccCE
Confidence            9888864

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=94.67  E-value=0.14  Score=31.07  Aligned_cols=29  Identities=31%  Similarity=0.591  Sum_probs=23.0

Q ss_pred             cEEEeCCCcEEEEeEeccC-CCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGS-PKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~  128 (163)
                      ...+.+|+++.|.|..... ....+.|++.
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq   37 (116)
T cd07706           8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQ   37 (116)
T ss_pred             ceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence            5678899999999998653 4567999974

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.66  E-value=0.089  Score=29.94  Aligned_cols=28  Identities=46%  Similarity=0.894  Sum_probs=23.0

Q ss_pred             CCCcEEEEeEecc-CCCC-eEEEEECCeEE
Q psy16425        105 EGSNVTLKCAASG-SPKP-NITWRREGGEL  132 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~  132 (163)
                      .++.+.|.|.+.+ +|.. .+.|++++..+
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~   36 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEV   36 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEE
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEecccee
Confidence            3788999999997 5654 69999999875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=94.64  E-value=0.12  Score=30.59  Aligned_cols=31  Identities=29%  Similarity=0.390  Sum_probs=24.0

Q ss_pred             EeCCCcEEEEeEecc-CCC--CeEEEEECCeEEE
Q psy16425        103 IREGSNVTLKCAASG-SPK--PNITWRREGGELI  133 (163)
Q Consensus       103 ~~~g~~~~l~C~~~~-~p~--p~v~W~~~~~~~~  133 (163)
                      +.+|..+++.|.+.+ +|.  ..+.|++....+.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~   45 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLP   45 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceec
Confidence            567999999999975 565  5699998765543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=94.27  E-value=0.62  Score=27.57  Aligned_cols=60  Identities=15%  Similarity=0.013  Sum_probs=35.8

Q ss_pred             EeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          8 EIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         8 ~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ++...+-|.+.|.|+....... . .......++.+.+..      .|.+...+..|.-.++|.+...
T Consensus        24 C~sa~gkPaa~IsW~~~~~G~~-~-~~~~~~~ngT~TV~S------~~~l~p~r~d~G~~vtC~V~H~   83 (97)
T cd07704          24 CCAAEGRPAADVTWETNVYGTS-E-SHSQEHPNGTTTVTS------EYIWVPSRHANGHPLTCVVSHP   83 (97)
T ss_pred             EEccCCccCCEeEEeCCCCCcc-c-eeeecCCCCCEEEEE------EEEEEeCHHHCCcEEEEEEeCc
Confidence            4556788999999998422211 1 111112233443333      5677666677878899999654

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=94.24  E-value=0.26  Score=29.37  Aligned_cols=24  Identities=42%  Similarity=0.749  Sum_probs=19.0

Q ss_pred             CCCcEEEEeEeccCC------CCeEEEEEC
Q psy16425        105 EGSNVTLKCAASGSP------KPNITWRRE  128 (163)
Q Consensus       105 ~g~~~~l~C~~~~~p------~p~v~W~~~  128 (163)
                      .|++++|.|.....+      .+.+.|++.
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~   30 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKL   30 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence            388999999987543      458999986

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=93.79  E-value=0.32  Score=29.59  Aligned_cols=29  Identities=34%  Similarity=0.618  Sum_probs=21.3

Q ss_pred             cEEEeCCCcEEEEeEeccCC----CCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSP----KPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p----~p~v~W~~~  128 (163)
                      ...+.+|++++|.|......    ...+.|++.
T Consensus         7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~   39 (116)
T cd05715           7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ   39 (116)
T ss_pred             eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence            56678899999999875432    245999763

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=93.54  E-value=0.13  Score=30.26  Aligned_cols=28  Identities=21%  Similarity=0.574  Sum_probs=21.8

Q ss_pred             EEeCCCcEEEEeEeccC--CCCeEEEEECC
Q psy16425        102 VIREGSNVTLKCAASGS--PKPNITWRREG  129 (163)
Q Consensus       102 ~~~~g~~~~l~C~~~~~--p~p~v~W~~~~  129 (163)
                      .+.+|+++.|.|...+.  ....+.|++..
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~   31 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQK   31 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEEC
Confidence            35689999999998764  45679998754

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=93.33  E-value=0.19  Score=29.55  Aligned_cols=26  Identities=35%  Similarity=0.694  Sum_probs=21.3

Q ss_pred             CCcEEEEeEeccC-CC-CeEEEEECCeE
Q psy16425        106 GSNVTLKCAASGS-PK-PNITWRREGGE  131 (163)
Q Consensus       106 g~~~~l~C~~~~~-p~-p~v~W~~~~~~  131 (163)
                      ++.+.|.|.+.++ |. ..++|.++|..
T Consensus        16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          16 SDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            5678999999984 54 36899999986

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=93.29  E-value=0.36  Score=29.56  Aligned_cols=57  Identities=19%  Similarity=0.209  Sum_probs=35.6

Q ss_pred             cEEEeCCCcEEEEeEeccC----CCCeEEEEE---------------CCeEEEec-----CCce------EEeceEEEEc
Q psy16425        100 DMVIREGSNVTLKCAASGS----PKPNITWRR---------------EGGELIAQ-----GNGQ------EDFPFFKRTK  149 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~----p~p~v~W~~---------------~~~~~~~~-----~~~~------~~~~~l~i~~  149 (163)
                      ...+..|+++.|.|.....    +...+.|..               ++......     ++..      ..+..|.|.+
T Consensus         7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n   86 (116)
T cd05879           7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN   86 (116)
T ss_pred             eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence            5567789999999998653    345799933               33322101     1111      1446788888


Q ss_pred             chhhhHh
Q psy16425        150 KKKKKKK  156 (163)
Q Consensus       150 v~~~~~~  156 (163)
                      ++..|.+
T Consensus        87 v~~sD~G   93 (116)
T cd05879          87 LDYTDNG   93 (116)
T ss_pred             CCcccCE
Confidence            8888875

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=93.19  E-value=0.34  Score=29.30  Aligned_cols=23  Identities=35%  Similarity=0.683  Sum_probs=17.9

Q ss_pred             CCcEEEEeEeccCC----------CCeEEEEEC
Q psy16425        106 GSNVTLKCAASGSP----------KPNITWRRE  128 (163)
Q Consensus       106 g~~~~l~C~~~~~p----------~p~v~W~~~  128 (163)
                      |++++|.|.....+          ...+.|++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~   34 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL   34 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence            88999999987543          246999985

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=93.18  E-value=0.51  Score=28.73  Aligned_cols=29  Identities=34%  Similarity=0.571  Sum_probs=21.5

Q ss_pred             CcEEEeCCCcEEEEeEeccCC----CCeEEEEE
Q psy16425         99 TDMVIREGSNVTLKCAASGSP----KPNITWRR  127 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p----~p~v~W~~  127 (163)
                      ..+.+.+|+++.|.|.....+    ...+.|++
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~   38 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF   38 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence            366788999999999975432    23599974

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=92.44  E-value=0.25  Score=29.47  Aligned_cols=27  Identities=26%  Similarity=0.453  Sum_probs=21.0

Q ss_pred             EeCCCcEEEEeEeccCCCCeEEEEECC
Q psy16425        103 IREGSNVTLKCAASGSPKPNITWRREG  129 (163)
Q Consensus       103 ~~~g~~~~l~C~~~~~p~p~v~W~~~~  129 (163)
                      +.+|++++|.|.........+.|++..
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~   29 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQP   29 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence            567999999999865545569999754

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=92.44  E-value=0.32  Score=28.37  Aligned_cols=50  Identities=16%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             CcEEEEeEeccCC---CCeEEEEECCeE---E---E---------e--cCCceE-----EeceEEEEcchhhhHh
Q psy16425        107 SNVTLKCAASGSP---KPNITWRREGGE---L---I---------A--QGNGQE-----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       107 ~~~~l~C~~~~~p---~p~v~W~~~~~~---~---~---------~--~~~~~~-----~~~~l~i~~v~~~~~~  156 (163)
                      +++.|.|.....+   ...+.|++....   .   .         .  ..+...     ....|+|.+|+.+|++
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G   75 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEG   75 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCE
Confidence            4689999887543   346999986531   0   0         0  000000     2468899999988875

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PHA02982 hypothetical protein; Provisional

Probab=92.36  E-value=2.5  Score=28.80  Aligned_cols=72  Identities=15%  Similarity=0.224  Sum_probs=41.4

Q ss_pred             ceEEEEEcccCCCCCeEEEEEEEeCCCce--EeEEEEEEcCCcccccCCCCcEEEeCCC-cEEEEeEeccCCCCeEEEEE
Q psy16425         51 KAWYLHIREVRESDRGWYMCQVNTDPMKS--QVGYLEVVVPPDILDYPTSTDMVIREGS-NVTLKCAASGSPKPNITWRR  127 (163)
Q Consensus        51 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~~~p~p~v~W~~  127 (163)
                      .+++|+|..+.++..|.|+|.+.......  ...-|.++... +..       ...++. .-.+.|-+...-.+-..|.-
T Consensus        98 ~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~-V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V  169 (251)
T PHA02982         98 NSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKED-ILY-------VVEEHNNETIITCFVGSKHGDVPRFIV  169 (251)
T ss_pred             cceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecce-EEE-------EEEecCCeEEEEEEEEeccCCCccEEE
Confidence            45699999999999999999996543222  23334443211 111       111222 34568887544333228887


Q ss_pred             CCe
Q psy16425        128 EGG  130 (163)
Q Consensus       128 ~~~  130 (163)
                      +|-
T Consensus       170 ~GV  172 (251)
T PHA02982        170 AGI  172 (251)
T ss_pred             eeE
Confidence            764

>KOG4597|consensus

Probab=92.14  E-value=0.26  Score=37.29  Aligned_cols=66  Identities=18%  Similarity=0.189  Sum_probs=42.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--CceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+...|+..+.+.+.|+|.+.-  +..+.-- ...  .-++..+.    ...-|.|.+....|+|.|+|.+.+.
T Consensus       212 etcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq--~~e~p~vt----stcql~ic~ewq~~a~w~tCs~rcg  279 (560)
T KOG4597|consen  212 ETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQ--TVENPVVT----STCQLVICNEWQADAGWYTCSARCG  279 (560)
T ss_pred             hhhcccccccCCcCceeeeehhhccccceeec-Ccc--ccCCccee----eeeeEEEcchhhcCCCceeeccccc
Confidence            35677899999999999998752  2111100 000  00111111    2347899999999999999999554

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=91.85  E-value=0.7  Score=27.09  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=15.9

Q ss_pred             CCcEEEEeEeccCC---CCeEEEEECC
Q psy16425        106 GSNVTLKCAASGSP---KPNITWRREG  129 (163)
Q Consensus       106 g~~~~l~C~~~~~p---~p~v~W~~~~  129 (163)
                      |+++.|.|......   ...+.|++..
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~   27 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQ   27 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECC
Confidence            67899999875321   1257787754

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=91.73  E-value=0.24  Score=29.48  Aligned_cols=27  Identities=41%  Similarity=0.866  Sum_probs=21.6

Q ss_pred             CCCcEEEEeEecc-C-CC-CeEEEEECCeE
Q psy16425        105 EGSNVTLKCAASG-S-PK-PNITWRREGGE  131 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~-p~-p~v~W~~~~~~  131 (163)
                      .+..+.|.|.+.+ + |. ..|.|.++++.
T Consensus        18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             cCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            5788999999988 4 53 36999999865

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=91.43  E-value=0.64  Score=28.39  Aligned_cols=30  Identities=27%  Similarity=0.626  Sum_probs=22.8

Q ss_pred             cEEEeCCCcEEEEeEeccCC--CCeEEEEECC
Q psy16425        100 DMVIREGSNVTLKCAASGSP--KPNITWRREG  129 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~~  129 (163)
                      ...+.+|++++|.|.....-  ...+.|++..
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~   37 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQA   37 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCCcccceEEEEEEC
Confidence            56788999999999876432  4569999743

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>KOG1480|consensus

Probab=91.33  E-value=0.079  Score=42.30  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=36.4

Q ss_pred             eeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          9 IGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         9 ~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +...+.|...+.|++ ++..+..        +..+.....    ..|.|..+...|+|+|+|.+.+.
T Consensus       152 r~pe~~paae~~w~k-~e~~~~p--------d~n~~~~~d----~~li~~~arlsd~~nytc~a~ni  205 (909)
T KOG1480|consen  152 RPPEGDPKAEVEWLK-NEVVIDP--------DANVIRASD----HNLIISQARLSDSGNYTCEATNI  205 (909)
T ss_pred             cCcccchhhhhhccc-cCCCCCc--------cccchhhhc----CCccccchhhhhcccceeeeehh
Confidence            345667778889999 5555432        111111222    26899999999999999999665

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=91.29  E-value=0.51  Score=27.64  Aligned_cols=24  Identities=33%  Similarity=0.663  Sum_probs=17.0

Q ss_pred             CCcEEEEeEeccCCC-CeEEEEECC
Q psy16425        106 GSNVTLKCAASGSPK-PNITWRREG  129 (163)
Q Consensus       106 g~~~~l~C~~~~~p~-p~v~W~~~~  129 (163)
                      |++++|.|....... -.+.|++..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~   25 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQ   25 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcC
Confidence            788999998654332 269999753

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PHA03042 CD47-like protein; Provisional

Probab=90.78  E-value=4.5  Score=28.69  Aligned_cols=54  Identities=15%  Similarity=0.284  Sum_probs=32.7

Q ss_pred             eeEEEeeeecc-----CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          4 RMLIEIGEMLM-----AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         4 ~~~~~~~~~~~-----~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++++|.....     ....+.|.. ++..+...++.               ...+|.+..... =.|+|+|++.+
T Consensus        33 TV~IpC~v~n~~~~ni~~~~V~Wkf-~~~~If~~n~t---------------n~aSL~~~f~~~-l~GNYTCEv~~   91 (286)
T PHA03042         33 TIVIVCNLNLLIYYNISNIHINWKF-NNKVIFKKNNT---------------NTSSLKFNFSKN-LSGNYTCEAIN   91 (286)
T ss_pred             eEEEEeecCChhhcCccceEEEEEe-CCeeEEEecCC---------------cceEEEEecccc-CCCceeEEEee
Confidence            46667765543     466789998 56665433211               112666655443 36999999954

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=90.59  E-value=1.1  Score=27.21  Aligned_cols=15  Identities=0%  Similarity=-0.113  Sum_probs=12.2

Q ss_pred             eceEEEEcchhhhHh
Q psy16425        142 FPFFKRTKKKKKKKK  156 (163)
Q Consensus       142 ~~~l~i~~v~~~~~~  156 (163)
                      ...|.|.+++.+|.+
T Consensus        71 ~asL~i~nv~~~D~G   85 (110)
T cd05902          71 NASLVLSRLRYSDSG   85 (110)
T ss_pred             eEEEEECCCCHHHCE
Confidence            468899999998875

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.97  E-value=0.88  Score=26.91  Aligned_cols=30  Identities=33%  Similarity=0.719  Sum_probs=24.3

Q ss_pred             CcEEEeCCCcEEEEeEec-cCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAAS-GSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~  128 (163)
                      ....+.+|+++.|.|... ......+.|++.
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~   39 (114)
T PF07686_consen    9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQ   39 (114)
T ss_dssp             SEEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred             CeEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence            356788999999999998 445668999984

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.20  E-value=2.7  Score=23.88  Aligned_cols=21  Identities=14%  Similarity=0.344  Sum_probs=17.3

Q ss_pred             EEEEcccCCCCCeEEEEEEEe
Q psy16425         54 YLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus        54 ~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .+.......+|+|.+.|.+..
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~   64 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASD   64 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcC
Confidence            566777888999999999943

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=88.60  E-value=8.7  Score=28.94  Aligned_cols=73  Identities=21%  Similarity=0.229  Sum_probs=43.4

Q ss_pred             ceEEEEEcccCCCCCeEEEEEEEeCCCceE--eEEEEEEcCCcccccCCCCcEEEeCCCc-EEEEeEecc--CCCCeEEE
Q psy16425         51 KAWYLHIREVRESDRGWYMCQVNTDPMKSQ--VGYLEVVVPPDILDYPTSTDMVIREGSN-VTLKCAASG--SPKPNITW  125 (163)
Q Consensus        51 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~p~~~~~~~~~~~~~~~g~~-~~l~C~~~~--~p~p~v~W  125 (163)
                      .+++|+|..+..+..|.|.|.+... ....  ..-|-|...-.+.+        ..+|.. -...|-+..  ..++.+.|
T Consensus       344 k~STLTIkka~I~N~GCY~~~a~~g-~~~~ec~~Cl~V~d~V~f~W--------~~e~~n~T~V~Cyv~sy~~kp~si~w  414 (500)
T PHA02914        344 KNSTLTIKKAHINNAGCYEAQAFMG-KFKEECRHCFKVADHVFFKW--------NTEGDNETKVACYAAQYDMQPFSILW  414 (500)
T ss_pred             hhceEEeeeEEEEcCCceEEEEecC-cchhhhhhheEeccEEEEEE--------EeccCceEEEEEEEEecccCCceeEE
Confidence            5679999999999999999999433 2222  11222211111111        112333 346787754  35667999


Q ss_pred             EECCeEE
Q psy16425        126 RREGGEL  132 (163)
Q Consensus       126 ~~~~~~~  132 (163)
                      .-+|...
T Consensus       415 kvnGV~~  421 (500)
T PHA02914        415 KSNGVSF  421 (500)
T ss_pred             EEccEEe
Confidence            9988654

>PHA03052 Hypothetical protein; Provisional

Probab=87.89  E-value=3  Score=22.79  Aligned_cols=34  Identities=29%  Similarity=0.557  Sum_probs=26.2

Q ss_pred             cEEEeCCCcEEEEeEec-cCC--CCeEEEEECCeEEE
Q psy16425        100 DMVIREGSNVTLKCAAS-GSP--KPNITWRREGGELI  133 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~-~~p--~p~v~W~~~~~~~~  133 (163)
                      ...+..|..+.+.|.+. |.|  .+.+.|..|+....
T Consensus         6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          6 GIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             cEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            45567799999999986 443  45699999988773

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=87.13  E-value=1.3  Score=26.32  Aligned_cols=25  Identities=36%  Similarity=0.667  Sum_probs=19.0

Q ss_pred             CCCcEEEEeEeccCC------CCeEEEEECC
Q psy16425        105 EGSNVTLKCAASGSP------KPNITWRREG  129 (163)
Q Consensus       105 ~g~~~~l~C~~~~~p------~p~v~W~~~~  129 (163)
                      .|++++|.|.....|      ...+.|++..
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~   31 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE   31 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence            488999999876553      3469999864

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=83.85  E-value=4.2  Score=24.98  Aligned_cols=15  Identities=7%  Similarity=-0.104  Sum_probs=12.4

Q ss_pred             eceEEEEcchhhhHh
Q psy16425        142 FPFFKRTKKKKKKKK  156 (163)
Q Consensus       142 ~~~l~i~~v~~~~~~  156 (163)
                      ...|.|.+++..|++
T Consensus        78 ~asL~i~~v~~sD~G   92 (117)
T cd05901          78 DASLTIVKLRASDAG   92 (117)
T ss_pred             ceEEEEcccccccCE
Confidence            478999999988875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=83.43  E-value=3.8  Score=24.99  Aligned_cols=30  Identities=20%  Similarity=0.352  Sum_probs=21.6

Q ss_pred             cEEEeCCCcEEEEeEeccCC------CCeEEEEECC
Q psy16425        100 DMVIREGSNVTLKCAASGSP------KPNITWRREG  129 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p------~p~v~W~~~~  129 (163)
                      ...+.+|+.++|.|.-...+      ...+.|++..
T Consensus         8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~   43 (119)
T cd05712           8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH   43 (119)
T ss_pred             EEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence            56788999999999764221      2358999753

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PHA03240 envelope glycoprotein M; Provisional

Probab=82.11  E-value=4.7  Score=27.48  Aligned_cols=21  Identities=29%  Similarity=0.200  Sum_probs=17.5

Q ss_pred             eEEEEEcccCCCCCeEEEEEE
Q psy16425         52 AWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus        52 ~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      +++|.|.+|..+|.|+|.-..
T Consensus       104 NstL~i~~vn~sd~~nYcr~k  124 (258)
T PHA03240        104 NSTLIIAHLNLSDAGEYCRKK  124 (258)
T ss_pred             cceEEEEEEeecCcchhhhcc
Confidence            348999999999999995544

>PHA03282 envelope glycoprotein E; Provisional

Probab=81.01  E-value=5.7  Score=30.44  Aligned_cols=47  Identities=32%  Similarity=0.500  Sum_probs=30.9

Q ss_pred             CCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc-eEeEEEEEEcCCc
Q psy16425         40 NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK-SQVGYLEVVVPPD   91 (163)
Q Consensus        40 ~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~~p~   91 (163)
                      ..|+.+...     +|.|.+++.+|+|.|+-.+...+.. .....+.+.+.|.
T Consensus       116 ~~rvs~~n~-----tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~  163 (540)
T PHA03282        116 PPRVAVVNG-----TLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGPR  163 (540)
T ss_pred             CcceeEecc-----eEEEeeccccCCceEEEEecCCCCchhheEEEEEEecCC
Confidence            455555532     7999999999999999998544332 2333444455443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		4e-07
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-06
3s97_C	201	Ptprz Cntn1 Complex Length = 201		5e-06
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		9e-06
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		2e-05
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		3e-05
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-05
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		3e-05
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-05
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		5e-05
4frw_A	218	Crystal Structure Of Human Nectin-4 Extracellular F		9e-05
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-04
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		2e-04
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		2e-04
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		2e-04
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		3e-04
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		4e-04
3kld_A	384	Ptprg Cntn4 Complex Length = 384		4e-04
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		5e-04
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		5e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		6e-04
4i0k_A	222	Crystal Structure Of Murine B7-H3 Extracellular Dom		8e-04

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 48  SETKAWY-----LHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVVPPDILDYPTSTDM 101
           S+T  W      LHI+ V   D G Y C+  N     +  G + +   PD LD  T T+ 
Sbjct: 247 SQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEA 306
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
            I  GS++   C ASG P+P + W R+G  L +Q
Sbjct: 307 DI--GSDLRWSCVASGKPRPAVRWLRDGQPLASQ 338

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 16  ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV-NT 74
           E  ++W R            +I +N +  +  S T+   L +R +  SD G Y+C+  N 
Sbjct: 33  EPAISWFR---------NGKLIEENEKYILKGSNTE---LTVRNIINSDGGPYVCRATNK 80
Query: 75  DPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR 127
                +  +L+V V P I+     T     E   VTL C A G P P ITW+R
Sbjct: 81  AGEDEKQAFLQVFVQPHIIQLKNETTY---ENGQVTLVCDAEGEPIPEITWKR 130

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 55  LHIREVRESDRGWYMCQVNTDPMKSQV--GYLEVVVPPDILDYPTSTDMVIR-------E 105
           L+I  V  SD+G Y C V++  +   V   ++ ++  P+    P   D+V++        
Sbjct: 68  LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 106 GSNVTLKCAASGSPKPNITWRR 127
           G NVTL+C A G+P P+I WR+
Sbjct: 128 GQNVTLECFALGNPVPDIRWRK 149

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 8   EIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGW 67
           ++G+ L    +V    +      T+    I+++  I  +    +   L I  V  S  G 
Sbjct: 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGN 691
Query: 68  YMCQVNTDPMKSQVGY-LEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWR 126
           + C         Q    L V VPP  +  PT  D    +GS+  ++C A G PKP +TW+
Sbjct: 692 FTCHARNLAGHQQFTTPLNVYVPPRWILEPT--DKAFAQGSDAKVECKADGFPKPQVTWK 749
Query: 127 REGGE 131
           +  G+
Sbjct: 750 KAVGD 754

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 54  YLHIREVRESDRGWYMCQVNTDPMKSQVGYLE----VVVPPDILDYPTSTDMVIREGSNV 109
           YL IR ++++D G Y C+      + ++ + +    V VPP +    +  +     G +V
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRI-LARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSV 214
Query: 110 TLKCAASGSPKPNITWRREG 129
           TL C A G P+P ++W ++G
Sbjct: 215 TLVCDADGFPEPTMSWTKDG 234

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 62  ESDRGWYMCQVNTDPMKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG 117
           +SD G Y C+   +  + ++ + +++V    PP I     S +     G  +T  C ASG
Sbjct: 162 KSDEGIYRCEGRVE-ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG 220
Query: 118 SPKPNITWRREG 129
           SP+P I+W R G
Sbjct: 221 SPEPAISWFRNG 232

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 55  LHIREVRESDRGWYMCQVN-TDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
           L I  V + D G Y C V   +   S    L V+VPP  L++P+  ++   E  ++  +C
Sbjct: 277 LLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPS--NLYAYESMDIEFEC 334
Query: 114 AASGSPKPNITWRREGGELI 133
           A SG P P + W + G  +I
Sbjct: 335 AVSGKPVPTVNWMKNGDVVI 354

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 62  ESDRGWYMCQVNTDPMKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG 117
           +SD G Y C+   +  + ++ + +++V    PP I     S +     G  +T  C ASG
Sbjct: 66  KSDEGIYRCEGRVE-ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG 124
Query: 118 SPKPNITWRREG 129
           SP+P I+W R G
Sbjct: 125 SPEPAISWFRNG 136

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 55  LHIREVRESDRGWYMCQVNTDPMKSQV-GYLEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
           L I  V   D G Y C+      +  V G + V   P+ L   + T+  I  GSN+   C
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADI--GSNLRWGC 315
Query: 114 AASGSPKPNITWRREGGELIAQ 135
           AA+G P+P + W R G  L +Q
Sbjct: 316 AAAGKPRPTVRWLRNGEPLASQ 337

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 47  HSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLE--VVVPPDILDYPTSTDMVIR 104
           H+ T    L  +     D G Y C+V+    K Q   L+  VV  P     P    +V++
Sbjct: 264 HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKV-IVVK 322
Query: 105 EGSNVTLKCAASGSPKPNITWRREGGEL 132
           +G +VT+ C  +G P PN+ W      L
Sbjct: 323 QGQDVTIPCKVTGLPAPNVVWSHNAKPL 350

>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment D1-D2 Length = 218

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 57  IREVRESDRGWYMCQVNTDPMKSQVGYLE--VVVPPDILDYPT-STDMVIREGSNVTL-- 111
           +R   ++D G Y C+V+T P  S    L   V+VPP     P+ +    + EG  +TL  
Sbjct: 83  LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPP----LPSLNPGPALEEGQGLTLAA 138
Query: 112 KCAASGSPKPNITWRRE 128
            C A GSP P++TW  E
Sbjct: 139 SCTAEGSPAPSVTWDTE 155

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 55  LHIREVRESDRGWYMCQVNTDPMKS--QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLK 112
           L I  V +SD G Y C  N     +    G L+V + P I   P +  ++  EG    L 
Sbjct: 64  LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKII--EGLKAVLP 121
Query: 113 CAASGSPKPNITW 125
           C   G+PKP+++W
Sbjct: 122 CTTMGNPKPSVSW 134

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG 136
           ++ +R  SN TL C  +G PKP + W R+G E+IA G
Sbjct: 11  NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG 47

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG 136
           ++ +R  SN TL C  +G PKP + W R+G E+IA G
Sbjct: 13  NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG 49

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG 136
           ++ +R  SN TL C  +G PKP + W R+G E+IA G
Sbjct: 13  NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG 49

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 95  YP---TSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDF 142
           YP    S+ MV+R G ++ L+C ASG P P+I W ++GG+L +     E+F
Sbjct: 224 YPQGTASSQMVLR-GMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENF 273

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 26/114 (22%)
Query: 55  LHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDIL---------DYPTSTDMVIRE 105
           L+I +V +SD G Y C V      + V   +V+ PP  L         +Y    ++   E
Sbjct: 158 LYIAKVEKSDVGNYTCVVT-----NTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 212
Query: 106 ------GSNVTLKCAASGSPKPNITWRREGGELIA------QGNGQEDFPFFKR 147
                 G+ V L+C A G+P P I WRR  G+ IA      + NG  + P F++
Sbjct: 213 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQ 266

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 26/114 (22%)
Query: 55  LHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDIL---------DYPTSTDMVIRE 105
           L+I +V +SD G Y C V      + V   +V+ PP  L         +Y    ++   E
Sbjct: 159 LYIAKVEKSDVGNYTCVVT-----NTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213
Query: 106 ------GSNVTLKCAASGSPKPNITWRREGGELIA------QGNGQEDFPFFKR 147
                 G+ V L+C A G+P P I WRR  G+ IA      + NG  + P F++
Sbjct: 214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQ 267

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 89  PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELI 133
           PP I+++P+  D+++ +G   TL C A G P P I W + GGE +
Sbjct: 9   PPRIVEHPS--DLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERV 50

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 89  PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELI 133
           PP I+++P+  D+++ +G   TL C A G P P I W + GGE +
Sbjct: 9   PPRIVEHPS--DLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERV 50

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 86  VVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPF 144
           V VPP +    ++ +       +VTL C A G P+P +TW ++ GE I Q + +E + F
Sbjct: 8   VNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKD-GEPIEQEDNEEKYSF 65

>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain Length = 222

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 14  MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWY----------LHIREVRES 63
           +A+  + W   DT+ ++    H  T+    G  +S   A +          L ++ VR +
Sbjct: 27  LAQLNLIWQLTDTKQLV----HSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82
Query: 64  DRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAA-SGSPKPN 122
           D G Y C V+     S    L+V  P          +  +R G+ VT+ C++  G P+  
Sbjct: 83  DEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAE 142
Query: 123 ITWRREGG 130
           + W+   G
Sbjct: 143 VFWKDGQG 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.86
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.86
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.85
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.85
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.84
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.84
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.84
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.83
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.83
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.82
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.82
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.82
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.82
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.82
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.82
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.81
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.81
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.8
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.8
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.8
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.8
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.8
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.79
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.79
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.79
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.79
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.79
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.79
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.79
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.79
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.79
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.78
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.78
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.78
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.78
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.78
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.78
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.78
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.77
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.77
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.77
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.77
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.77
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.77
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.76
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.76
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.76
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.76
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.76
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.76
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.76
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.76
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.75
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.75
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.75
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.75
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.75
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.75
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.74
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.74
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.74
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.74
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.74
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.74
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.74
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.74
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.74
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.73
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.73
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.73
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.73
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.73
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.73
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.72
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.72
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.72
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.72
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.72
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.72
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.72
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.72
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.72
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.72
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.71
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.71
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.71
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.71
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.71
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.71
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.71
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.71
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.71
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.71
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.71
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.7
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.7
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.7
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.7
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.7
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.7
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.7
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.7
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.7
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.69
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.69
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.69
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.69
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.69
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.69
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.69
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.69
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.69
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.68
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.68
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.68
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.68
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.68
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.68
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.68
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.68
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.68
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.68
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.67
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.67
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.67
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.67
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.67
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.67
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.67
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.67
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.67
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.67
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.67
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.66
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.66
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.66
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.66
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.66
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.66
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.66
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.66
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.66
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.66
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.66
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.66
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.66
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.65
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.65
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.65
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.65
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.65
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.65
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.64
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.64
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.64
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.64
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.64
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.64
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.64
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.63
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.63
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.63
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.63
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.63
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.63
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.63
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.63
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.63
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.63
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.63
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.62
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.62
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.62
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.62
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.62
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.62
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.61
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.61
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.61
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.6
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.6
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.6
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.6
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.6
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.6
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.6
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.59
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.59
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.59
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.59
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.59
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.59
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.59
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.58
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.58
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.58
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.58
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.57
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.57
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.57
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.57
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.56
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.55
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.55
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.54
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.54
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.53
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.52
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.52
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.52
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.51
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.51
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.5
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.5
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.49
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.49
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.49
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.47
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.47
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.46
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.46
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.45
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.45
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.45
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.44
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.43
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.43
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.43
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.42
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.42
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.42
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.4
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.4
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.4
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.4
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.4
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.39
1he7_A	126	High affinity nerve growth factor receptor; transf	99.38
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.38
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.38
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.37
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.37
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.37
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.36
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.36
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.35
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.35
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.35
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.34
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.33
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.32
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.31
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.31
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.31
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.31
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.31
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.3
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.3
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.3
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.29
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.28
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.27
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.27
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.26
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.25
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.24
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.24
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.24
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.22
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	98.86
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.22
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.21
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.21
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.21
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.19
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.19
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.19
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.18
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.18
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.18
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.18
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.18
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.18
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.18
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.17
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.16
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.16
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.16
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.16
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.16
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.16
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.16
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.15
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.15
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	99.14
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.14
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	99.14
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.13
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.12
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.12
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.12
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.12
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	99.11
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	99.11
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.1
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.09
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.08
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.08
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.08
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.08
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.06
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.06
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.05
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	99.04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.04
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.04
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.03
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.03
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	99.02
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.02
1oga_D	215	T-cell receptor alpha chain V region, beta-2-micro	99.02
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.01
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.01
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	99.01
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.99
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	98.98
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.98
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.98
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.98
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	98.97
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.96
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.96
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.96
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.95
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.94
2ens_A	96	Advanced glycosylation END product-specific recept	98.94
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.94
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	98.94
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	98.93
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.93
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.92
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.92
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	98.92
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.92
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.91
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.91
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.9
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.9
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.9
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	98.9
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.9
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.89
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.89
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.88
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.88
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.87
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.87
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.87
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.87
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.87
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.86
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.86
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.86
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.86
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.86
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.85
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.85
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.85
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.84
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.83
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.83
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.82
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.82
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.82
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.82
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.82
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.81
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.81
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.81
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.81
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.8
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.8
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.8
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.8
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.8
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.79
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.79
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.79
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.79
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.79
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.78
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.78
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.78
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.78
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.77
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.77
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.76
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.76
3khq_A	133	B-cell antigen receptor complex-associated protei	98.76
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.75
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.75
3qjh_A	205	5C.C7 alpha chain; immunoglobulin domain, T cell r	98.75
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.75
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.75
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.74
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.74
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.74
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.74
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	98.73
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.73
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.73
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.73
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.72
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.72
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.72
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.72
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.72
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.71
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.71
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.71
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.71
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.71
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.7
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.7
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.7
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.7
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.7
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.7
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	98.7
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.69
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.69
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.69
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.69
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.69
1ymm_D	207	T cell receptor alpha chain; protein-protein compl	98.69
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.69
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.68
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	98.68
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.68
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.68
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	98.68
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.68
1xt5_A	135	Variable region-containing chitin-binding protein	98.67
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.67
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.67
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.67
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.11
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	98.66
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.65
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.65
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.65
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.65
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.64
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.64
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.64
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.64
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.64
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.64
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.63
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.63
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	98.63
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	98.63
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.63
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.63
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.62
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.62
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.62
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.62
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.61
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.61
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	98.61
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.61
2otu_A	115	FV light chain variable domain; antibody FV polygl	98.6
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	98.59
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.59
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.59
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	98.59
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.59
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.58
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.57
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.57
1he7_A	126	High affinity nerve growth factor receptor; transf	98.57
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.56
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	98.56
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.56
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.56
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.55
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.55
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.54
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.54
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.54
3b9v_A	120	Heavy chain variable domain; antibody engineering,	98.54
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.53

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.86  E-value=3.4e-20  Score=124.28  Aligned_cols=141  Identities=16%  Similarity=0.258  Sum_probs=98.4

Q ss_pred             eeEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          4 RMLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         4 ~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      .+.+.|... +.|.|.|.|++ ++..+.        ...++.+..+. .+..+|.|.+++.+|+|.|+|.+.| +.....
T Consensus        19 ~v~l~c~~~~~~P~p~i~W~k-ng~~l~--------~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N-g~a~~~   88 (207)
T 3rbs_A           19 QVRFWMQAEKLSGNAKVNYIF-NEKEIF--------EGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD-GKATNH   88 (207)
T ss_dssp             CEEEEEECSCCCSCCEEEEEE-TTEEEC--------SSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE-TTEEEE
T ss_pred             eEEEEEEEecCCCCCEEEEEE-CCEECc--------cCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC-CCeEEE
Confidence            456666654 47999999999 666652        23344433332 3566899999999999999999977 333333


Q ss_pred             EEEEEE---------------------cCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCCeEEEEECCeEEEecCCce
Q psy16425         82 GYLEVV---------------------VPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKPNITWRREGGELIAQGNGQ  139 (163)
Q Consensus        82 ~~l~v~---------------------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~~~  139 (163)
                      ..+.+.                     .+|.+....   ...+.+|+++.|.|.+.|. |.|.+.|++++.++....+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~---~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~  165 (207)
T 3rbs_A           89 STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL---SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD  165 (207)
T ss_dssp             EEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE---EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCC
T ss_pred             EEEEEEccchhhhcccccccccccccCCCCceEecC---CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceE
Confidence            333211                     133332211   3567899999999999998 999999999999986654433


Q ss_pred             E--EeceEEEEcchhhhHhh
Q psy16425        140 E--DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       140 ~--~~~~l~i~~v~~~~~~~  157 (163)
                      .  +...|.|.+++++|.+.
T Consensus       166 ~~~~~~~L~I~~v~~~D~G~  185 (207)
T 3rbs_A          166 FKDGICTLLITEFSKKDAGI  185 (207)
T ss_dssp             CSSEEEEEEETTCCGGGCEE
T ss_pred             cCCCEEEEEECCCCcccCEE
Confidence            2  34579999999999763

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.86  E-value=5.9e-20  Score=123.02  Aligned_cols=144  Identities=19%  Similarity=0.268  Sum_probs=109.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCC-CCCeEEEEEEEeCC-C-ce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRE-SDRGWYMCQVNTDP-M-KS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~~~~-~-~~   79 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.       ....++.......+..+|.|.+++. +|+|.|+|.+.+.. . ..
T Consensus        22 ~~v~l~C~~~g~p~~~v~W~~-~~~~~~-------~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~   93 (212)
T 2yd1_A           22 GVASFYCAARGDPPPSIVWRK-NGKKVS-------GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVS   93 (212)
T ss_dssp             SCEEEEEEEECSSCCEEEEEE-TTEECC-------TTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEE
T ss_pred             CEEEEEEEEccCCCCeEEEEE-CCEECC-------CCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEE
Confidence            468889999999999999999 554431       2345666655545557899999999 99999999997663 3 45


Q ss_pred             EeEEEEEEcC-------CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC-CceEEeceEEEEcch
Q psy16425         80 QVGYLEVVVP-------PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG-NGQEDFPFFKRTKKK  151 (163)
Q Consensus        80 ~~~~l~v~~~-------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~~~~~~l~i~~v~  151 (163)
                      ..+.|.|...       |.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+.... .....++.|.|.+++
T Consensus        94 ~~~~l~V~~~~~~~~~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~  171 (212)
T 2yd1_A           94 ADATLTIYEGDKTPAGFPVITQGP--GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSR  171 (212)
T ss_dssp             EEEEEEEECTTCSCTTCCEEEECC--CCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTEEEECSCC
T ss_pred             eeEEEEEecccCCCCCCCeeEeCC--CceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCeEEEccCC
Confidence            5667777765       3444333  34667889999999999999999999999998876532 223456789999999


Q ss_pred             hhhHh
Q psy16425        152 KKKKK  156 (163)
Q Consensus       152 ~~~~~  156 (163)
                      .+|.+
T Consensus       172 ~~d~G  176 (212)
T 2yd1_A          172 EEDQG  176 (212)
T ss_dssp             GGGCE
T ss_pred             hhhCE
Confidence            98875

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.85  E-value=9.5e-21  Score=137.49  Aligned_cols=140  Identities=21%  Similarity=0.329  Sum_probs=110.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.+.|++.++..+.        ...+  ...   .+..|.|.+++.+|+|.|+|.+.|. +.....
T Consensus       221 ~~v~l~C~~~g~P~p~i~W~k~~~~~~~--------~~~~--~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  287 (384)
T 3kld_A          221 TTVKLECFALGNPVPTILWRRADGKPIA--------RKAR--RHK---SNGILEIPNFQQEDAGSYECVAENSRGKNVAK  287 (384)
T ss_dssp             SCEEEEEEEEEESCCEEEEEETTCCCCC--------TTCE--ECT---TSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEeecCCCcEEEEeCCCcccc--------ccce--ecC---CCcEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence            3678899999999999999996554431        1111  111   1238999999999999999999776 444556


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ..|.|..+|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+....+....++.|.|.+++.+|++.
T Consensus       288 ~~l~v~~~P~~~~~~--~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~  361 (384)
T 3kld_A          288 GQLTFYAQPNWVQII--NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGM  361 (384)
T ss_dssp             EEEEEEEEEEEEECC--CCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEE
T ss_pred             EEEEEecCCccccCC--CceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEE
Confidence            778888888776644  35678899999999999999999999999999987776666677899999999998763

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.85  E-value=4.1e-20  Score=121.61  Aligned_cols=145  Identities=17%  Similarity=0.320  Sum_probs=108.7

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC--Cce
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP--MKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~--~~~   79 (163)
                      ..+.|.|...+.+ .+.+.|++.++..+.       ....++..........+|.|.+++.+|+|.|+|.+.+..  ...
T Consensus        18 ~~v~l~C~~~~~~~~~~v~W~~~~g~~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   90 (191)
T 1epf_A           18 ESKFFLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   90 (191)
T ss_dssp             CCEEEEEEECCCSCCCEEEEECTTSCEEC-------CBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             CCEEEEEECCCCCCCceEEEEeCCCcccc-------CCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceE
Confidence            4688889888876 899999995555442       134556655444456699999999999999999997764  334


Q ss_pred             EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce---EEeceEEEEcchhhhHh
Q psy16425         80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ---EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~---~~~~~l~i~~v~~~~~~  156 (163)
                      ..+.|.+..+|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+.......   ..++.|.|.+++.+|.+
T Consensus        91 ~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  168 (191)
T 1epf_A           91 ATVNVKIFQKLMFKNAP--TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEG  168 (191)
T ss_dssp             EEEEEEEECCSEEEECC--SSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCE
T ss_pred             EEEEEEeecCceEecCC--CcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCE
Confidence            45566777777766544  35678899999999999999999999999998875433221   24457999999998875

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.84  E-value=5.7e-20  Score=121.50  Aligned_cols=146  Identities=21%  Similarity=0.259  Sum_probs=107.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.       ....++.......+..+|.|.+++.+|+|.|+|.+.+. +.....
T Consensus        20 ~~v~l~C~~~~~p~~~v~W~~-~~~~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~   91 (197)
T 2j8h_A           20 SNATLVCKVTGHPKPIVKWYR-QGKEII-------ADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT   91 (197)
T ss_dssp             SCEEEEEEEECSSCCEEEEEE-TTEECC-------CCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEEEeecCCCEEEEEE-CCEECc-------cCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEE
Confidence            468889999899999999999 554442       12345555544455668999999999999999999766 334555


Q ss_pred             EEEEEEcCCcccccCC---CCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEc-chhh
Q psy16425         82 GYLEVVVPPDILDYPT---STDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTK-KKKK  153 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~---~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~-v~~~  153 (163)
                      +.|.|..+|.+.....   .....+.+|+.+.|.|.+.+.|.|.+.|++++..+........    ....|.|.+ ++.+
T Consensus        92 ~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~  171 (197)
T 2j8h_A           92 ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK  171 (197)
T ss_dssp             EEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGG
T ss_pred             EEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcc
Confidence            6777776655433221   1245678899999999999999999999999988865544432    346788888 9888


Q ss_pred             hHh
Q psy16425        154 KKK  156 (163)
Q Consensus       154 ~~~  156 (163)
                      |.+
T Consensus       172 d~G  174 (197)
T 2j8h_A          172 DAG  174 (197)
T ss_dssp             GCE
T ss_pred             cCE
Confidence            875

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.84  E-value=3e-19  Score=117.75  Aligned_cols=144  Identities=14%  Similarity=0.219  Sum_probs=105.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+        ....++.....+ ...+|.|.+++.+|+|.|+|.+.+. +.....
T Consensus        23 ~~v~l~C~~~~~p~~~v~W~~-~~~~~--------~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~   92 (197)
T 3lcy_A           23 EAAQLSCQIVGRPLPDIKWYR-FGKEL--------IQSRKYKMSSDG-RTHTLTVMTEEQEDEGVYTCIATNEVGEVETS   92 (197)
T ss_dssp             SEEEEEEEEEEESCCEEEEEE-TTEEE--------CCCSSEEEEESS-SEEEEEEECCSGGGCEEEEEEEECSSCEEEEE
T ss_pred             CcEEEEEEEecCCCCEEEEEE-CCEEC--------CCCccEEEEeCC-CEEEEEEecCCccCCEEEEEEEECCCCceeEE
Confidence            468889998889999999999 55544        223444444332 3458999999999999999999765 444555


Q ss_pred             EEEEEEcCCccccc-CCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEE----eceEEEEcchh-hhH
Q psy16425         82 GYLEVVVPPDILDY-PTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQED----FPFFKRTKKKK-KKK  155 (163)
Q Consensus        82 ~~l~v~~~p~~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~----~~~l~i~~v~~-~~~  155 (163)
                      ..+.+...|..... +......+.+|+.+.|.|.+.+.|.|.+.|++++..+.........    ...|.|.++++ +|.
T Consensus        93 ~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~  172 (197)
T 3lcy_A           93 SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHA  172 (197)
T ss_dssp             EEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHC
T ss_pred             EEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhC
Confidence            66777766655432 2223566789999999999999999999999999887655544432    26799999985 675


Q ss_pred             h
Q psy16425        156 K  156 (163)
Q Consensus       156 ~  156 (163)
                      +
T Consensus       173 G  173 (197)
T 3lcy_A          173 G  173 (197)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.83  E-value=1.1e-18  Score=116.83  Aligned_cols=142  Identities=19%  Similarity=0.275  Sum_probs=99.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEE-eCCCceEEEEEccc-CCCCCeEEEEEEEeC-CCce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVT-HSETKAWYLHIREV-RESDRGWYMCQVNTD-PMKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~L~i~~v-~~~d~G~Y~C~~~~~-~~~~   79 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.         ..+.... ........|.|.++ +.+|+|.|+|.+.+. +...
T Consensus        22 ~~v~L~C~~~g~p~~~v~W~k-~~~~~~---------~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~   91 (212)
T 2yd6_A           22 GVASFICQATGDPRPKIVWNK-KGKKVS---------NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEIS   91 (212)
T ss_dssp             SCEEEEEEEEEESCCEEEEEE-TTEECC---------CTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEE
T ss_pred             CeEEEEEEEeeCCCCEEEEEE-CCcCCC---------CCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEE
Confidence            468889999899999999999 554432         1222222 11123457999999 599999999999766 3344


Q ss_pred             EeEEEEEEcC-------CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC---CceE----EeceE
Q psy16425         80 QVGYLEVVVP-------PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG---NGQE----DFPFF  145 (163)
Q Consensus        80 ~~~~l~v~~~-------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~---~~~~----~~~~l  145 (163)
                      ..+.|.|...       |.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....   +...    ..+.|
T Consensus        92 ~~~~l~V~~~~~~~~~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L  169 (212)
T 2yd6_A           92 VSTRLTVLREDQIPRGFPTIDMGP--QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGAL  169 (212)
T ss_dssp             EEEEEEEECGGGCCTTCCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEE
T ss_pred             EEEEEEEeccCccCCCcceeecCC--cceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEE
Confidence            5566777653       3333322  34567889999999999999999999999998876542   1111    23789


Q ss_pred             EEEcchhhhHh
Q psy16425        146 KRTKKKKKKKK  156 (163)
Q Consensus       146 ~i~~v~~~~~~  156 (163)
                      .|.+++.+|.+
T Consensus       170 ~i~~~~~~d~G  180 (212)
T 2yd6_A          170 QIEQSEESDQG  180 (212)
T ss_dssp             EECSCCGGGCE
T ss_pred             EEcCCCcccCE
Confidence            99999998875

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.83  E-value=3e-20  Score=124.16  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=94.7

Q ss_pred             cceeEEEee---eeccCCCEEEEEEcCCceEEee----eeeEE----ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEE
Q psy16425          2 AARMLIEIG---EMLMAESTVAWLRVDTQTILTI----QTHVI----TKNHRIGVTHSETKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         2 ~~~~~~~~~---~~~~~~~~i~W~k~~~~~~~~~----~~~~~----~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      ..++.|.|.   ..+.|.+.|.|+|.+.......    .....    ....++..... .++++|.|.+++.+|+|.|+|
T Consensus         8 Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C   86 (203)
T 4fa8_A            8 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS-ANTFFLVVTAANISHDGNYLC   86 (203)
T ss_dssp             TCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEE-TTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEc-CCEEEEEEccCCHHHCeEEEE
Confidence            347888884   4567899999999532211110    00000    11223332222 346789999999999999999


Q ss_pred             EEEeC-CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEe----cCCceE-Eece
Q psy16425         71 QVNTD-PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA----QGNGQE-DFPF  144 (163)
Q Consensus        71 ~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~----~~~~~~-~~~~  144 (163)
                      .+.+. +.....+.|.|..+|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|+++++.+..    ..+... .++.
T Consensus        87 ~a~n~~g~~~~~~~l~V~~p~~~~~~~--~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~  164 (203)
T 4fa8_A           87 RMKLGETEVTKQEHLSVVKPLTLSVHS--ERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGS  164 (203)
T ss_dssp             EEEETTEEEEEEEEEEEEEEEEEEEEE--EECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTSC
T ss_pred             EEEcCCCcEEEEEEEEecCCceeeecc--eeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCC
Confidence            99775 344555677777666555433  245577899999999999999999999987765432    122222 2233


Q ss_pred             ---EEEEcchhhhHh
Q psy16425        145 ---FKRTKKKKKKKK  156 (163)
Q Consensus       145 ---l~i~~v~~~~~~  156 (163)
                         +.|.++..+|.+
T Consensus       165 l~il~i~~v~~~D~G  179 (203)
T 4fa8_A          165 LSVAVDLSLPKPWHL  179 (203)
T ss_dssp             EEEEEEEEECSSCCC
T ss_pred             EEEEEECCCCHHHCE
Confidence               344688888765

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.82  E-value=4.8e-19  Score=118.21  Aligned_cols=140  Identities=17%  Similarity=0.321  Sum_probs=96.6

Q ss_pred             EEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeEEE
Q psy16425          6 LIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYL   84 (163)
Q Consensus         6 ~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~l   84 (163)
                      .+.|...+ .|.+.|.|++ ++..+.        ...++.....+ +..+|.|.+++.+|+|.|+|.+.+. .......+
T Consensus        21 ~l~C~~~~~~p~~~i~W~~-~g~~i~--------~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~n~-~~~~~~~~   89 (212)
T 2r15_A           21 QLYSFVTYYVEDLKVNWSH-NGSAIR--------YSDRVKTGVTG-EQIWLQINEPTPNDKGKYVMELFDG-KTGHQKTV   89 (212)
T ss_dssp             EEEEEBSSCCSSCEEEEEE-TTEECC--------CCSSEEEEEET-TEEEEEEESCCGGGCEEEEEEEECS-SCEEEEEE
T ss_pred             EEEEEEeccCCCceEEEEE-CCEEcc--------CCCeEEEEEeC-CEEEEEECCCCcccCEEEEEEEecC-CcceEEEE
Confidence            34444444 3689999999 555542        23455544433 3457999999999999999999764 33333444


Q ss_pred             EEEc----------------------CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEe
Q psy16425         85 EVVV----------------------PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDF  142 (163)
Q Consensus        85 ~v~~----------------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~  142 (163)
                      .+.+                      .|.+.... .....+.+|+.+.|.|.+.+.|.|.+.|++++..+..........
T Consensus        90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~  168 (212)
T 2r15_A           90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGL-PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF  168 (212)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBC-CSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEE
T ss_pred             EEEEeeccchhhhccccCcccccccCCCcccccC-CCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEE
Confidence            4432                      23332222 235678899999999999999999999999999887665544322


Q ss_pred             -----ceEEEEcchhhhHhh
Q psy16425        143 -----PFFKRTKKKKKKKKK  157 (163)
Q Consensus       143 -----~~l~i~~v~~~~~~~  157 (163)
                           ..|.|.+++.+|.+.
T Consensus       169 ~~~~~~~L~i~~~~~~d~G~  188 (212)
T 2r15_A          169 EAGRTAYFTINGVSTADSGK  188 (212)
T ss_dssp             ETTTEEEEEESSCCGGGCEE
T ss_pred             cCCCEEEEEEcCcchHHCeE
Confidence                 389999999998763

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.82  E-value=2e-19  Score=118.30  Aligned_cols=141  Identities=22%  Similarity=0.365  Sum_probs=107.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-C-ceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-M-KSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~-~~~   80 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.       ....++.+...+   ..|.|.+++.+|+|.|+|.+.+.. . ...
T Consensus        23 ~~v~l~C~~~~~p~~~i~W~~-~~~~~~-------~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~   91 (192)
T 2iep_A           23 EVATFMCAVESYPQPEISWTR-NKILIK-------LFDTRYSIRENG---QLLTILSVEDSDDGIYCCTANNGVGGAVES   91 (192)
T ss_dssp             SCEEEECCEEEESCCEEEEEE-TTEECC-------TTCTTEEEEGGG---TEEEESSCCGGGCEEEEEEEECSSSCCEEE
T ss_pred             CcEEEEeeCCCCCCCeEEEEE-CCEEcc-------ccCccEEEcCCc---cEEEEcCCCcccCeEEEEEEEcCCCceeEe
Confidence            467889999889999999999 554432       223555555433   279999999999999999997653 2 345


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhhHh
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+..+|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+........ ..+.|.|.+++.+|.+
T Consensus        92 ~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  166 (192)
T 2iep_A           92 CGALQVKMKPKITRPP--INVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAG  166 (192)
T ss_dssp             EEEEEEEEEEEEEECC--CCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCE
T ss_pred             EEEEEEEeCCccccCC--cceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCE
Confidence            5678888877776644  356788999999999999999999999999988765544332 4567999999998875

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.82  E-value=1.9e-18  Score=120.15  Aligned_cols=141  Identities=18%  Similarity=0.295  Sum_probs=107.0

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVG   82 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~   82 (163)
                      .+.+.|...+.|.+.+.|++ ++..+.        ...++..... .....|.|.+++.+|+|.|+|.+.+. +.....+
T Consensus       116 ~~~l~C~~~g~p~~~v~W~~-~~~~~~--------~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  185 (284)
T 2rik_A          116 HTRYECKIGGSPEIKVLWYK-DETEIQ--------ESSKFRMSFV-ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST  185 (284)
T ss_dssp             CEEEEEEEESSSCCEEEEEE-TTEECC--------CSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eEEEEEEEeeeCCCEEEEEE-CCEECc--------CCCcEEEEEc-CCEEEEEECCCCcccCEEEEEEEEcCCCceeEEE
Confidence            57788998889999999999 554432        1222222221 13458999999999999999999766 4455667


Q ss_pred             EEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--E--eceEEEEcchhhhHh
Q psy16425         83 YLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--D--FPFFKRTKKKKKKKK  156 (163)
Q Consensus        83 ~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~--~~~l~i~~v~~~~~~  156 (163)
                      .|.|..+|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+........  .  ...|.|.+++.+|.+
T Consensus       186 ~l~V~~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  261 (284)
T 2rik_A          186 SLKVKEPPVFRKKP--HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG  261 (284)
T ss_dssp             EEEEECCCBCCSCC--CCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEEecCCcceeCC--CcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCE
Confidence            78888888776644  356788999999999999999999999999998866554432  1  257899999998875

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.82  E-value=1.1e-19  Score=119.18  Aligned_cols=143  Identities=22%  Similarity=0.315  Sum_probs=102.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc---e
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK---S   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~---~   79 (163)
                      .++.|.|...+.|.+.+.|++ ++..+..      ....++.....+    +|.|.+++.+|+|.|+|.+.+....   .
T Consensus        18 ~~v~l~C~~~~~p~~~v~W~~-~~~~~~~------~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~   86 (189)
T 2v5t_A           18 EDAEVVCRVSSSPAPAVSWLY-HNEEVTT------ISDNRFAMLANN----NLQILNINKSDEGIYRCEGRVEARGEIDF   86 (189)
T ss_dssp             SCEEECCEEECSSCCEEEEEC------CB------CCCTTEEECTTS----CEEETTCCGGGCEEEEEEEEETTTTEEEE
T ss_pred             CcEEEEEEEcCCCCCEEEEEE-CCcccee------ccCCeEEEecCC----CEEEeeCCHhHCcEEEEEEEEcCCCceEE
Confidence            468889998888999999999 4443321      123455554443    7999999999999999999766322   2


Q ss_pred             EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--EeceEEEEcchhhhHh
Q psy16425         80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~  156 (163)
                      ....+.+..+|.+...+......+.+|+.+.|.|.+.+.|.|.+.|++++..+........  .+..|+|.+++.+|.+
T Consensus        87 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  165 (189)
T 2v5t_A           87 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGG  165 (189)
T ss_dssp             EEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCe
Confidence            3445666667666554332245677899999999999999999999999988765544332  3467999999998875

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.82  E-value=1.3e-18  Score=120.95  Aligned_cols=143  Identities=15%  Similarity=0.261  Sum_probs=107.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.        ...++..... .+..+|.|.+++.+|+|.|+|.+.+. +.....
T Consensus        21 ~~v~l~C~~~g~p~~~v~W~~-~~~~~~--------~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~   90 (284)
T 2rik_A           21 ESGTFKCHVTGTAPIKITWAK-DNREIR--------PGGNYKMTLV-ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS   90 (284)
T ss_dssp             CCEEEEEEEESSSCCEEEEEE-TTEECC--------SSSSEEEEEE-TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEEcCCCCEEEEEE-CCEECc--------CCCcEEEEEc-CCEEEEEEecCCcccCEEEEEEEEECCceEEEE
Confidence            468889999899999999999 554432        2233332221 23458999999999999999999765 344566


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..+|.+..... ....+.+|+.+.|.|.+.+.|.|.+.|++++..+........    ....|.|.+++.+|.+
T Consensus        91 ~~l~V~~~p~~~~~~~-~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  168 (284)
T 2rik_A           91 AQLGVQEPPRFIKKLE-PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG  168 (284)
T ss_dssp             EEEEEECCCEEEECCC-SEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEEccCCCcccccCC-CceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCE
Confidence            7788888887665433 356688999999999999999999999999988765544332    3467999999998875

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.82  E-value=1.5e-18  Score=114.22  Aligned_cols=137  Identities=16%  Similarity=0.248  Sum_probs=101.6

Q ss_pred             ceeEEEeeeeccCC--CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceE
Q psy16425          3 ARMLIEIGEMLMAE--STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~--~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   80 (163)
                      ..+.|.|...+.|.  +.+.|++ ++..+.        .....      ..+..|.|.+++.+|+|.|+|.+.+.+....
T Consensus        19 ~~v~l~C~~~~~~~~~~~v~W~~-~~~~~~--------~~~~~------~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~   83 (190)
T 2wv3_A           19 LPVTLQCNLTSSSHTLMYSYWTK-NGVELT--------ATRKN------ASNMEYRINKPRAEDSGEYHCVYHFVSAPKA   83 (190)
T ss_dssp             SCEEEEEEEEECSSCEEEEEEEE-TTEECT--------TCCBC------CSEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceEEEEEEeccCCCCceEEEEEE-CCEECc--------ccceE------eccEEEEEecCCcccCEEEEEEEEeCCcccc
Confidence            46888898887776  8999999 554431        11111      1235899999999999999999977655566


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEE--CCeEEEec---CCceE----EeceEEEEcch
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR--EGGELIAQ---GNGQE----DFPFFKRTKKK  151 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~--~~~~~~~~---~~~~~----~~~~l~i~~v~  151 (163)
                      .+.|.|..+|.+...+  ....+.+|+.+.|.|.+.|+|.|.+.|++  ++..+...   .+...    ..+.|.|.+++
T Consensus        84 ~~~l~V~~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  161 (190)
T 2wv3_A           84 NATIEVKAAPDITGHK--RSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQ  161 (190)
T ss_dssp             EEEEEEECCCEEEEEC--SEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCC
T ss_pred             cEEEEEecCCcccccC--CcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEecc
Confidence            6788888888877644  35678899999999999999999999999  66665422   22222    11379999999


Q ss_pred             -hhhHh
Q psy16425        152 -KKKKK  156 (163)
Q Consensus       152 -~~~~~  156 (163)
                       .+|.+
T Consensus       162 ~~~d~G  167 (190)
T 2wv3_A          162 ITEDPG  167 (190)
T ss_dssp             TTTSCE
T ss_pred             ccCCCE
Confidence             68865

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.81  E-value=8.6e-19  Score=115.45  Aligned_cols=144  Identities=22%  Similarity=0.291  Sum_probs=102.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+...      ...++..... .+..+|.|.+++.+|+|.|+|.+.+. +.....
T Consensus        21 ~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~------~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~   92 (194)
T 2a38_A           21 STATFEAHISGFPVPEVSWFR-DGQVISTS------TLPGVQISFS-DGRAKLTIPAVTKANSGRYSLKATNGSGQATST   92 (194)
T ss_dssp             SCEEEEEEEEEESCCEEEEEE-SSSBCCTT------TSTTCEEEEE-TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEEEEecCCCEEEEEE-CCEEcccc------cCCceEEEeC-CCEEEEEECCCCcccCEEEEEEEEcCCceEeEE
Confidence            468889999889999999999 55443211      1112222221 23458999999999999999999765 333444


Q ss_pred             EEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--Ee--ceEEEEcchhhh
Q psy16425         82 GYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DF--PFFKRTKKKKKK  154 (163)
Q Consensus        82 ~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~--~~l~i~~v~~~~  154 (163)
                      ..+.|..   +|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+........  ++  ..|.|.+++.+|
T Consensus        93 ~~l~v~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  170 (194)
T 2a38_A           93 AELLVKAETAPPNFVQRL--QSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPED  170 (194)
T ss_dssp             EEEEEECCCEEEEEEECC--CCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGG
T ss_pred             EEEEEccCCCCCEEEeCC--ccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhc
Confidence            5666663   34444333  356788999999999999999999999999998765544332  22  279999999988


Q ss_pred             Hh
Q psy16425        155 KK  156 (163)
Q Consensus       155 ~~  156 (163)
                      .+
T Consensus       171 ~G  172 (194)
T 2a38_A          171 SG  172 (194)
T ss_dssp             CE
T ss_pred             Ce
Confidence            75

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.81  E-value=1.5e-18  Score=131.81  Aligned_cols=142  Identities=19%  Similarity=0.290  Sum_probs=108.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.+.|...+.|.+.|.|++ ++..+.        ...++...... ....|.|.+++.+|+|.|+|.+.|. +.....
T Consensus       307 ~~~~l~C~~~g~P~p~v~W~k-~~~~l~--------~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~  376 (570)
T 3b43_A          307 EHTRYECKIGGSPEIKVLWYK-DETEIQ--------ESSKFRMSFVE-SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS  376 (570)
T ss_dssp             CEEEEEEEEESSSSCEEEEEE-TTEECC--------CSSSEEEEEET-TEEEEEEESCCGGGCEEEEEEEEBTTBCCEEE
T ss_pred             CcEEEEEEEeeCCCCEEEEeE-CCEECC--------CCCcEEEEEEC-CEEEEEECCCCcccCEEEEEEEEeCCCEEEEE
Confidence            357889999999999999999 555442        22333322221 2347999999999999999999776 555667


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--Ee--ceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DF--PFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~--~~l~i~~v~~~~~~  156 (163)
                      +.|.|..+|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+........  ++  ..|.|.+|+.+|.+
T Consensus       377 ~~l~V~~~P~~~~~~--~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G  453 (570)
T 3b43_A          377 TSLKVKEPPVFRKKP--HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG  453 (570)
T ss_dssp             EEECEECCCEECSCC--CCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEEecCCCeeecCC--CceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCE
Confidence            788899888776654  356778999999999999999999999999988765544332  21  47899999999875

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.80  E-value=1.8e-18  Score=125.14  Aligned_cols=148  Identities=20%  Similarity=0.285  Sum_probs=109.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      .++.|.|...+.|.+.|.|++.+ +..+...   .....+|+.+... .++.+|.|.+++.+|+|.|+|.+.|. +....
T Consensus        16 ~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~---~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   91 (389)
T 2jll_A           16 GQVTLVCDAEGEPIPEITWKRAVDGFTFTEG---DKSLDGRIEVKGQ-HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK   91 (389)
T ss_dssp             SEEEEEEEEECSSCCEEEEEETTTTEEECC-----CCSSSSEEEEEC-SSEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CeEEEEEEeecccCCeEEEEeCCCCceeccC---cCCCCCeEEEecc-CCcceEEEcccChhhCEEEEEEEEeCCCCcce
Confidence            46889999999999999999942 4443211   0112456665543 24568999999999999999999775 55566


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCC--ceE----EeceEEEEcchhhh
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN--GQE----DFPFFKRTKKKKKK  154 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~--~~~----~~~~l~i~~v~~~~  154 (163)
                      .+.|.|..+|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  ...    ....|.|.+++.+|
T Consensus        92 ~~~l~V~~~P~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d  169 (389)
T 2jll_A           92 SMYLDIEYAPKFISNQ--TIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDND  169 (389)
T ss_dssp             EEEEEEEEEEEECCSC--CEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTS
T ss_pred             EEEEEEEeCCEEecCc--ceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhh
Confidence            7788888888776533  244678999999999999999999999999988755431  111    23469999999888


Q ss_pred             Hh
Q psy16425        155 KK  156 (163)
Q Consensus       155 ~~  156 (163)
                      .+
T Consensus       170 ~G  171 (389)
T 2jll_A          170 FG  171 (389)
T ss_dssp             SE
T ss_pred             CE
Confidence            65

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.80  E-value=2.7e-18  Score=113.38  Aligned_cols=139  Identities=23%  Similarity=0.333  Sum_probs=100.2

Q ss_pred             ceeEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCC--c----eEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSET--K----AWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~--~----~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|... +.|.+.|.|++ ++..+.....      .++.......  .    ..+|.|.+++.+|+|.|+|.+.+.
T Consensus        18 ~~v~l~C~~~~~~p~~~v~W~~-~g~~l~~~~~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   90 (195)
T 2c5d_C           18 LTGTLRCQLQVQGEPPEVHWLR-DGQILELADS------TQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLG   90 (195)
T ss_dssp             CCEEEEEEEEEESSCCCCEEEE-TTEECCSCEE------EEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEET
T ss_pred             CcEEEecccccCCCCcEEEEEE-CCEEcccCCC------CceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeC
Confidence            4678889888 89999999999 5555432211      1222221111  1    348999999999999999999775


Q ss_pred             CCc--eEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCceEEeceEEEEcch
Q psy16425         76 PMK--SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQEDFPFFKRTKKK  151 (163)
Q Consensus        76 ~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~  151 (163)
                      ...  +..+.|.|..+|.+...+  ....+.+|+.+.|.|.+.+.|.| .+.|++++..+...... ..++.|.|.+++
T Consensus        91 ~~~~~~~~~~l~V~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-~~~~~L~i~~~~  166 (195)
T 2c5d_C           91 HQTFVSQPGYVGLEGLPYFLEEP--EDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-GPQRSLHVPGLN  166 (195)
T ss_dssp             TEEEECCCEEEEECCSCEEEECC--CCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-SCCEEEEECCCS
T ss_pred             CCceecccEEEEEecCCeEEcCC--CcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-CCCCeEEEcccc
Confidence            322  234678888888776644  35678899999999999999999 99999999877544332 345678888776

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.80  E-value=2.7e-19  Score=134.87  Aligned_cols=146  Identities=14%  Similarity=0.213  Sum_probs=104.7

Q ss_pred             ceeEEEeeee-ccCCCEEEEEEcCCceEEeeee---eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc
Q psy16425          3 ARMLIEIGEM-LMAESTVAWLRVDTQTILTIQT---HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK   78 (163)
Q Consensus         3 ~~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   78 (163)
                      ..+.|.|... +.|.+.|.|++ ++..+.....   ..+.. .+...     ...+|.|.+++.+|+|.|+|.+.|.  .
T Consensus       243 ~~v~L~C~~~~g~p~p~i~W~k-~g~~l~~~~~~~~~~~~~-~~~~~-----~~~~L~I~~v~~~DsG~Y~C~a~N~--~  313 (527)
T 3qs9_E          243 EPLWIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMSTYST-NRTMI-----RILFAFVSSVARNDTGYYTCSSSKH--P  313 (527)
T ss_dssp             SCEEEEEEEEESSSCCCEEEEC-SSSCCCGGGEEEEEEEET-TTEEE-----EEEEEEESSCCGGGCEEEEEEETTE--E
T ss_pred             CeEEEEEEEccCCCCeEEEEEE-CCEECCCCceeeeeeecc-Cccee-----eEEEEEEccCCcccCeEEEEEEEeC--C
Confidence            3678889886 89999999999 4444321100   00011 11111     1237999999999999999999665  5


Q ss_pred             eEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425         79 SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        79 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.|.|..+|.+...+......+.+|+.+.|.|.+.|+|.|.+.|++++..+.........+..|.|.+++.+|++.
T Consensus       314 ~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~  392 (527)
T 3qs9_E          314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGE  392 (527)
T ss_dssp             EEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSC
T ss_pred             CceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEE
Confidence            6667788887776655443334667889999999999999999999999999986665444456789999999998763

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.80  E-value=1e-18  Score=121.81  Aligned_cols=145  Identities=17%  Similarity=0.314  Sum_probs=106.7

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--e
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--S   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~   79 (163)
                      ..+.|.|...+.+ .+.|.|++.++..+.       ....++..........+|.|.+++.+|+|.|+|.+.+....  .
T Consensus        18 ~~v~l~C~~~~~~~~~~i~W~~~~g~~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~   90 (291)
T 1qz1_A           18 ESKFFLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   90 (291)
T ss_dssp             CCEEEEEEESSCCSCCEEEEECTTSCBCC-------SSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEE
T ss_pred             CeEEEEEEeCCCCCCcEeEEECCCCeECc-------cCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeE
Confidence            4688889888876 699999995554432       12345555544445568999999999999999999776432  3


Q ss_pred             EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce---EEeceEEEEcchhhhHh
Q psy16425         80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ---EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~---~~~~~l~i~~v~~~~~~  156 (163)
                      ..+.|.+..+|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+.......   ..++.|.|.+++.+|.+
T Consensus        91 ~~~~l~v~~~~~~~~~~--~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  168 (291)
T 1qz1_A           91 ATVNVKIFQKLMFKNAP--TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEG  168 (291)
T ss_dssp             EEEEEEEECCSEEEECC--SSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCE
T ss_pred             EEEEEEeeccccccCCC--CcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCe
Confidence            45566777777666544  35678899999999999999999999999998764332221   24567999999988875

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.79  E-value=2.3e-18  Score=112.47  Aligned_cols=134  Identities=24%  Similarity=0.387  Sum_probs=98.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeCCC--ce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTDPM--KS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~   79 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+...        .+....... ....+|.|.+++.+|+|.|+|.+.+...  .+
T Consensus        18 ~~v~l~C~~~~~p~~~v~W~k-~~~~~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   88 (182)
T 1rhf_A           18 QPVKLNCSVEGMEEPDIQWVK-DGAVVQNL--------DQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   88 (182)
T ss_dssp             CCEEEEEEEESCSSCCEEEEE-TTEECCSS--------EEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CcEEEEEEEeCCCCCeEEEEE-CCeecCCC--------CceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEE
Confidence            468889998889999999999 55444221        122222111 1235899999999999999999976532  34


Q ss_pred             EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCceEEeceEEEEcc
Q psy16425         80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQEDFPFFKRTKK  150 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~~~~~l~i~~v  150 (163)
                      ..+.|.|..+|.+...+  ....+.+|+.+.|.|.+.+.|.| .+.|++++..+...   ......|.|.++
T Consensus        89 ~~~~l~V~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~---~~~~~~L~i~~~  155 (182)
T 1rhf_A           89 QPVWLTVEGVPFFTVEP--KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP---APSPSVLNVTGV  155 (182)
T ss_dssp             CCEEEEEECSCEEEECC--CCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS---EESSEEEEECCC
T ss_pred             EEEEEEEecCCeEEecC--cceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCC---CCCceEEEEecc
Confidence            56788898888877654  35678899999999999999999 99999999876332   124566777777

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.79  E-value=1.1e-18  Score=126.69  Aligned_cols=139  Identities=21%  Similarity=0.348  Sum_probs=105.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+.        .... .....   +..|.|.+++.+|+|.|+|.+.+. +.....
T Consensus       238 ~~v~l~C~~~g~p~~~v~W~~-~~~~~~--------~~~~-~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  304 (404)
T 3p3y_A          238 MDLLLECIASGVPTPDIAWYK-KGGDLP--------SDKA-KFENF---NKALRITNVSEEDSGEYFCLASNKMGSIRHT  304 (404)
T ss_dssp             SCEEEECCBCCSSCCEEEEEE-TTBCCC--------TTTE-EEEGG---GTEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCEEEEEEECCCCCCcEEEEE-CCEECC--------CCcc-ccccc---CceEEEccCCHhHCEEEEEEEEeCCCcEEEE
Confidence            357888999999999999999 554431        1111 11111   128999999999999999999776 445566


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC---CceEEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG---NGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~---~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..+|.+...+  ....+.+|+.+.|.|.+.|+|.|.+.|++++..+....   .....++.|.|.+++.+|++
T Consensus       305 ~~l~V~~~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  380 (404)
T 3p3y_A          305 ISVRVKAAPYWLDEP--KNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRA  380 (404)
T ss_dssp             EEEEEEEEEEEEECC--CCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCC
T ss_pred             EEEEEeCCCeeeccC--CcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCE
Confidence            778888887766644  35678899999999999999999999999999875443   22246678999999998875

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.79  E-value=4.7e-19  Score=121.06  Aligned_cols=152  Identities=17%  Similarity=0.236  Sum_probs=101.8

Q ss_pred             ceeEEEeeeec---cCCCEEEEEEcCCce--E-Eeeee------------------eEEecCCeEEEEeCCCceEEEEEc
Q psy16425          3 ARMLIEIGEML---MAESTVAWLRVDTQT--I-LTIQT------------------HVITKNHRIGVTHSETKAWYLHIR   58 (163)
Q Consensus         3 ~~~~~~~~~~~---~~~~~i~W~k~~~~~--~-~~~~~------------------~~~~~~~r~~~~~~~~~~~~L~i~   58 (163)
                      .++.|.|...+   .+.+.|.|++.+...  . ...+.                  ......+|+.+...  ++.+|.|.
T Consensus        18 ~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~L~I~   95 (250)
T 2fbo_J           18 GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANL--AAPTLRLT   95 (250)
T ss_dssp             SCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCT--TSCCEEEC
T ss_pred             CeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccC--CcceEEEe
Confidence            46888898876   888999999954321  1 11100                  00123455554442  34589999


Q ss_pred             ccCCCCCeEEEEEEEeCCCc------eEeEEEEEEcC--CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCe
Q psy16425         59 EVRESDRGWYMCQVNTDPMK------SQVGYLEVVVP--PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGG  130 (163)
Q Consensus        59 ~v~~~d~G~Y~C~~~~~~~~------~~~~~l~v~~~--p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~  130 (163)
                      +++.+|+|.|+|.+.+....      ...+.|.|..+  |............+.+|+++.|.|.+.+.|.|.+.|++++.
T Consensus        96 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~  175 (250)
T 2fbo_J           96 HVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPT  175 (250)
T ss_dssp             SCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEE
T ss_pred             eCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCC
Confidence            99999999999999765322      23566777664  22222222235667789999999999999999999999987


Q ss_pred             EEEecC----------------------CceE---EeceEEEEcchhhhHh
Q psy16425        131 ELIAQG----------------------NGQE---DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       131 ~~~~~~----------------------~~~~---~~~~l~i~~v~~~~~~  156 (163)
                      .+....                      ....   ....|.|.+++.+|.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G  226 (250)
T 2fbo_J          176 FFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAG  226 (250)
T ss_dssp             CSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCE
T ss_pred             cccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCE
Confidence            653311                      0111   2378999999999976

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.79  E-value=2.2e-18  Score=114.75  Aligned_cols=148  Identities=16%  Similarity=0.185  Sum_probs=100.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC----ceEEeee------eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT----QTILTIQ------THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~----~~~~~~~------~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .++.|.|...+.+.+.|.||+.+.    ..+....      .......+|+.+..++    +|.|.+++.+|+|.|+|.+
T Consensus        15 ~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~----~L~i~~v~~~D~G~Y~C~~   90 (208)
T 3r4d_A           15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG----SLLFQMITMKDMGVYTLDM   90 (208)
T ss_dssp             CCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTS----CEEECSCCGGGCEEEEEEE
T ss_pred             CcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCC----eEEEccccccCCeEEEEEE
Confidence            468899998888999999998432    1111110      0001124566555443    7999999999999999999


Q ss_pred             EeCC--CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--EeceEEEE
Q psy16425         73 NTDP--MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DFPFFKRT  148 (163)
Q Consensus        73 ~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~~~l~i~  148 (163)
                      .+..  .......|.|..++........... +.+|+.+.|.|.+.+.| |.+.|++++..+........  .+..|.|.
T Consensus        91 ~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~~~L~i~  168 (208)
T 3r4d_A           91 TDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRID  168 (208)
T ss_dssp             ECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETTTTEEEES
T ss_pred             EcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCCCEEEEe
Confidence            7663  2334455667655322111111122 78899999999999866 89999999988765544443  33789999


Q ss_pred             cchhhhHh
Q psy16425        149 KKKKKKKK  156 (163)
Q Consensus       149 ~v~~~~~~  156 (163)
                      +++.+|.+
T Consensus       169 ~v~~~d~G  176 (208)
T 3r4d_A          169 PIKREDAG  176 (208)
T ss_dssp             SCCGGGCE
T ss_pred             ccCHHhCe
Confidence            99999875

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.79  E-value=2.7e-18  Score=130.40  Aligned_cols=143  Identities=16%  Similarity=0.274  Sum_probs=107.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+        ....++...... ....|.|.+++.+|+|.|+|.+.|. +..+..
T Consensus       213 ~~~~l~C~~~g~p~p~i~W~k-~g~~i--------~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~  282 (570)
T 3b43_A          213 ESGTFKCHVTGTAPIKITWAK-DNREI--------RPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTCYASNVAGKDSCS  282 (570)
T ss_dssp             SCEEEEEEEESSSCCEEEEEE-TTEEC--------CTTSSEEEEEET-TEEEEEESSBCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEEECCCCEEEEEE-CCEEC--------cCCCcEEEEEEC-CEEEEEEcccCcccCEEEEEEEECCCCcEEEE
Confidence            367889999999999999999 55544        222333322211 2348999999999999999999776 444556


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..+|.+..... ....+.+|+.+.|.|.+.|.|.|.+.|++++..+........    ....|.|.+++.+|.+
T Consensus       283 ~~l~V~~~p~~~~~~~-~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G  360 (570)
T 3b43_A          283 AQLGVQEPPRFIKKLE-PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG  360 (570)
T ss_dssp             EEECCBCCCEEEECCC-SBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCE
T ss_pred             EEEEeecCCcccccCC-CccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCE
Confidence            7788888887655332 234577899999999999999999999999998765544332    3367999999999876

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.79  E-value=1.7e-18  Score=115.36  Aligned_cols=147  Identities=18%  Similarity=0.225  Sum_probs=104.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEe-ee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC---
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILT-IQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP---   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~-~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~---   76 (163)
                      ..+.|.|...+.|.+.|.|++.+...... ..  ........|+....     .+|.|.+++.+|+|.|+|.+.+..   
T Consensus        17 ~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~L~i~~v~~~D~G~Y~C~~~~~~g~~   91 (212)
T 1f97_A           17 ESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS-----SGITFSSVTRKDNGEYTCMVSEEGGQN   91 (212)
T ss_dssp             CCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET-----TEEEESCCCGGGCEEEEEEEEETTSSS
T ss_pred             CCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec-----eeEEEcccCcccCeEEEEEEEccCCCc
Confidence            46888999988899999999954432110 00  01112345666554     289999999999999999997752   


Q ss_pred             CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeE-eccCCCCeEEEEECCe-EEEecCCc---------e--EEec
Q psy16425         77 MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCA-ASGSPKPNITWRREGG-ELIAQGNG---------Q--EDFP  143 (163)
Q Consensus        77 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~-~~~~~~~~---------~--~~~~  143 (163)
                      .....+.|.|..+|.+...+.  ...+.+|+.+.|.|. +.+.|.|.+.|++++. .+......         .  ...+
T Consensus        92 ~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (212)
T 1f97_A           92 YGEVSIHLTVLVPPSKPTISV--PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSG  169 (212)
T ss_dssp             EEEEEEEEEEEBCCCCCEEEC--CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTC
T ss_pred             ccEEEEEEEEEcCCCCcccCC--ccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCc
Confidence            234566788888887665443  346788999999999 6899999999999998 65443221         1  1356


Q ss_pred             eEEEEcchhhhHh
Q psy16425        144 FFKRTKKKKKKKK  156 (163)
Q Consensus       144 ~l~i~~v~~~~~~  156 (163)
                      .|.|.+++.+|.+
T Consensus       170 ~L~i~~~~~~d~G  182 (212)
T 1f97_A          170 DLIFDPVTAFDSG  182 (212)
T ss_dssp             CEEESSCCGGGCE
T ss_pred             eEEEEecChhhCc
Confidence            8999999998875

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.79  E-value=6e-19  Score=117.63  Aligned_cols=152  Identities=17%  Similarity=0.237  Sum_probs=104.9

Q ss_pred             ceeEEEeeeeccC----CCEEEEEEcCC-------ceEEeeeeeEEe-----cCCeEEEEeC--CCceEEEEEcccCCCC
Q psy16425          3 ARMLIEIGEMLMA----ESTVAWLRVDT-------QTILTIQTHVIT-----KNHRIGVTHS--ETKAWYLHIREVRESD   64 (163)
Q Consensus         3 ~~~~~~~~~~~~~----~~~i~W~k~~~-------~~~~~~~~~~~~-----~~~r~~~~~~--~~~~~~L~i~~v~~~d   64 (163)
                      .++.|.|...+.+    .+.|.|++.+.       ..+...++....     ..+|+.+...  ..++.+|.|.+++.+|
T Consensus        16 ~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D   95 (214)
T 3jz7_A           16 ETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSD   95 (214)
T ss_dssp             SCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEECSCCGGG
T ss_pred             CCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEccCChhh
Confidence            4688889887776    57999998432       112222222222     2567766542  1245689999999999


Q ss_pred             CeEEEEEEEeC-CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEe-ccCCCCeEEEEECCe--EEEecCCceE
Q psy16425         65 RGWYMCQVNTD-PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAA-SGSPKPNITWRREGG--ELIAQGNGQE  140 (163)
Q Consensus        65 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~--~~~~~~~~~~  140 (163)
                      +|.|+|.+.+. +.....+.|.|..+|.+...+.  ...+.+|+.+.|.|.+ .+.|.|.+.|++++.  .+........
T Consensus        96 ~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~  173 (214)
T 3jz7_A           96 IGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFV--DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEM  173 (214)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEE--ESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGGGT
T ss_pred             CeEEEEEEEeCCCccccEEEEEEEcCCCCceeee--ecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccceecc
Confidence            99999999765 3345667788888877655332  2336789999999999 799999999999543  3322222223


Q ss_pred             EeceEEEEcchhhhHh
Q psy16425        141 DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       141 ~~~~l~i~~v~~~~~~  156 (163)
                      .++.|.|.+++.+|.+
T Consensus       174 ~~~~L~i~~~~~~d~G  189 (214)
T 3jz7_A          174 TSPVISVKNASSEYSG  189 (214)
T ss_dssp             TSSEEEECSCCGGGCE
T ss_pred             CCCEEEEecCCHHHCE
Confidence            4568999999999875

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.79  E-value=1.2e-18  Score=126.54  Aligned_cols=140  Identities=24%  Similarity=0.396  Sum_probs=108.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+.       ....++.....+    .|.|.+++.+|+|.|+|.+.+. +.....
T Consensus       237 ~~~~l~C~~~~~p~~~~~W~~-~~~~~~-------~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  304 (403)
T 3laf_A          237 KDAVLECCVSGYPPPSFTWLR-GEEVIQ-------LRSKKYSLLGGS----NLLISNVTDDDSGTYTCVVTYKNENISAS  304 (403)
T ss_dssp             SCEEECCEEEEESCCEEEEEE-TTEECC-------CSSSSEEEETTT----EEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEcCCCCCCeEEEEE-CCeecc-------CCCceEEECCcc----EEEEeCCCHHHCEEEEEEEEcCCCceEEE
Confidence            357888999999999999999 554432       122334444333    8999999999999999999776 445566


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..+|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++++..+........ .++.|.|.+++.+|.+
T Consensus       305 ~~l~V~~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G  378 (403)
T 3laf_A          305 AELTVLVPPWFLNHP--SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEG  378 (403)
T ss_dssp             EEEEEEEEEEEEECC--CCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCE
T ss_pred             EEEEEECCCcEeecC--cceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCE
Confidence            778888888776644  356688999999999999999999999999998765554443 4578999999999875

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.79  E-value=5.5e-18  Score=110.70  Aligned_cols=135  Identities=14%  Similarity=0.164  Sum_probs=89.7

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCCceEEeee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-C
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDTQTILTIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-M   77 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~   77 (163)
                      .++.|.|...+  .+.+.|.|++ ++..+....  ...+...+|+.+...+    +|.|.+++.+|+|.|+|.+.+.. .
T Consensus        12 ~~v~L~c~~~~~~~~~~~i~W~k-~~~~i~~~~~~~~~~~~~~r~~~~~~g----sL~I~~v~~~D~G~Y~C~~~n~~g~   86 (176)
T 1hng_A           12 HGINLNIPNFQMTDDIDEVRWER-GSTLVAEFKRKMKPFLKSGAFEILANG----DLKIKNLTRDDSGTYNVTVYSTNGT   86 (176)
T ss_dssp             SCEEECCTTCCCCTTEEEEEEEE-TTEEEEEEETTSCCEESSTTEEECTTS----CEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             CcEEEcCCCCCcccccccEEEEe-CCceeEEEcCCCeecCCCCeEEECCCC----cEEEcccccccCEEEEEEEEeCCCC
Confidence            46788885544  6678999999 554443211  1122345677775444    69999999999999999997763 3


Q ss_pred             c--eEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhH
Q psy16425         78 K--SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKK  155 (163)
Q Consensus        78 ~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~  155 (163)
                      .  ...+.|.|..++..      +. ....+..+.|.|.+.+.|.|.+.|++++..+.....       +.|..++.+|.
T Consensus        87 ~~~~~~~~l~V~~~~~~------p~-i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-------~~i~~~~~~d~  152 (176)
T 1hng_A           87 RILNKALDLRILEMVSK------PM-IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-------KTMSYQWTNLR  152 (176)
T ss_dssp             EEEEEEEEEEEECCCCC------CE-EEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-------SEEEEECSCCS
T ss_pred             EEEEEEEEEEEeCCCCC------CE-EEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-------EEEEEEEccCC
Confidence            2  44456666654321      11 122355699999999999999999999988765543       34445555554


Q ss_pred             h
Q psy16425        156 K  156 (163)
Q Consensus       156 ~  156 (163)
                      +
T Consensus       153 G  153 (176)
T 1hng_A          153 A  153 (176)
T ss_dssp             S
T ss_pred             e
Confidence            3

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.78  E-value=2.3e-18  Score=124.48  Aligned_cols=136  Identities=24%  Similarity=0.346  Sum_probs=106.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++.++. +..          ++     ......|.|.+++.+|+|.|+|.+.+. +.....
T Consensus       223 ~~v~l~C~~~g~p~~~i~W~~~~~~-~~~----------~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  286 (382)
T 1cs6_A          223 QMVTLECFAFGNPVPQIKWRKLDGS-QTS----------KW-----LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ  286 (382)
T ss_dssp             CCEEEECEEEEESCCEEEEEECCSC-CSC----------CC-----SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEccCCCCEEEEEECCcc-ccc----------EE-----ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEE
Confidence            3578889988999999999995433 210          00     012238999999999999999999776 344556


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..+|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+....++.|.|.+++.+|.+
T Consensus       287 ~~l~V~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G  359 (382)
T 1cs6_A          287 GRIIIHAQPDWLDVI--TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSG  359 (382)
T ss_dssp             EEEEEEEEEEEEECC--CCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCE
T ss_pred             EEEEEecCCCcccCC--CccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCE
Confidence            678888777776644  3567889999999999999999999999999988766666667789999999999876

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.78  E-value=5.9e-18  Score=118.96  Aligned_cols=142  Identities=19%  Similarity=0.246  Sum_probs=100.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCC-ceEEEEEcccCC-CCCeEEEEEEEeC-CCce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSET-KAWYLHIREVRE-SDRGWYMCQVNTD-PMKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~L~i~~v~~-~d~G~Y~C~~~~~-~~~~   79 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.         ..++....... ....|.|.+++. +|+|.|+|.+.+. +...
T Consensus        22 ~~v~l~C~~~g~p~~~i~W~k-~g~~i~---------~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~   91 (304)
T 2yd9_A           22 GVASFVCQATGDPKPRVTWNK-KGKKVN---------SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEIT   91 (304)
T ss_dssp             SCEEEEEEEECSSCCEEEEC-----------------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEEC
T ss_pred             CeEEEEEEEEEeCCCeEEEEE-CCEECC---------CCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEE
Confidence            468889999999999999999 454431         23333332222 235899999998 9999999999765 4445


Q ss_pred             EeEEEEEEcC-------CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCC---c-eEEeceEEEE
Q psy16425         80 QVGYLEVVVP-------PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN---G-QEDFPFFKRT  148 (163)
Q Consensus        80 ~~~~l~v~~~-------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~---~-~~~~~~l~i~  148 (163)
                      ..+.|.|...       |.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+.....   . ....+.|.|.
T Consensus        92 ~~~~l~V~~~~~~p~~~p~i~~~~--~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~  169 (304)
T 2yd9_A           92 VHAKLTVLREDQLPSGFPNIDMGP--QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIE  169 (304)
T ss_dssp             CEEEEEEECGGGCCTTCCEEEECC--CCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEEC
T ss_pred             EEEEEEEeccccCCCCCCeeecCC--ccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEc
Confidence            5667777765       3333333  356788999999999999999999999999988754321   1 1244689999


Q ss_pred             cchhhhHh
Q psy16425        149 KKKKKKKK  156 (163)
Q Consensus       149 ~v~~~~~~  156 (163)
                      +++.+|.+
T Consensus       170 ~~~~~d~G  177 (304)
T 2yd9_A          170 SSEETDQG  177 (304)
T ss_dssp             SCCGGGCE
T ss_pred             cCCcccCE
Confidence            99998875

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.78  E-value=1.1e-18  Score=121.73  Aligned_cols=143  Identities=22%  Similarity=0.363  Sum_probs=103.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-C--ce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-M--KS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~--~~   79 (163)
                      ..+.|.|...+.|.+.|.|++. +..+..      ....++.....+    .|.|.+++.+|+|.|+|.+.+.. .  ..
T Consensus       116 ~~v~l~C~~~~~p~~~v~W~~~-~~~~~~------~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  184 (291)
T 1qz1_A          116 EDAVIVCDVVSSLPPTIIWKHK-GRDVIL------KKDVRFIVLSNN----YLQIRGIKKTDEGTYRCEGRILARGEINF  184 (291)
T ss_dssp             SCEEECCEEECSSCCEEEEEET-TSCSST------TCCTTEEECTTS----CEEETTCCGGGCEEEEEEEEEGGGTEEEE
T ss_pred             CeEEEEEEeccCCCCEEEEEEC-CEEccc------CCCceEEEccCC----cEEEccCccccCeEEEEEEEecCCCceee
Confidence            3578889998999999999994 443311      112344333333    79999999999999999997652 2  22


Q ss_pred             EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC----CceE--EeceEEEEcchhh
Q psy16425         80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG----NGQE--DFPFFKRTKKKKK  153 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~----~~~~--~~~~l~i~~v~~~  153 (163)
                      ....+.+..+|.+..........+.+|+.+.|.|.+.|.|.|.+.|++++..+....    ....  .+..|.|.+++.+
T Consensus       185 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  264 (291)
T 1qz1_A          185 KDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN  264 (291)
T ss_dssp             EEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGG
T ss_pred             EEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChh
Confidence            445667777777665443334567889999999999999999999999998875543    1111  3467999999999


Q ss_pred             hHh
Q psy16425        154 KKK  156 (163)
Q Consensus       154 ~~~  156 (163)
                      |.+
T Consensus       265 d~G  267 (291)
T 1qz1_A          265 DEA  267 (291)
T ss_dssp             GCE
T ss_pred             cCE
Confidence            875

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.78  E-value=3.5e-18  Score=123.64  Aligned_cols=138  Identities=20%  Similarity=0.311  Sum_probs=103.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++.+.....   ........++... .+    .|.|.+++.+|+|.|+|.+.|. +.....
T Consensus       228 ~~v~l~C~~~g~p~p~v~W~~~~~~~~~---~~~~~~~~~~~~~-~~----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  299 (388)
T 2v5m_A          228 HTISLLCPAQGFPAPSFRWYKFIEGTTR---KQAVVLNDRVKQV-SG----TLIIKDAVVEDSGKYLCVVNNSVGGESVE  299 (388)
T ss_dssp             SCEEECCCCEEESCCEEEEEEECTTSSC---EEECCCSSSEEEE-TT----EEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CcEEEEEECCCCCCCEEEEEecCCCCcc---cccccccCceecc-cC----EEEECcCCHHHCeEEEEEEecCCCceeEE
Confidence            3578889988999999999995322110   0111223344332 22    8999999999999999999776 445566


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..+|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+..      .++.|.|.+++.+|.+
T Consensus       300 ~~l~V~~~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~------~~~~L~i~~v~~~d~G  366 (388)
T 2v5m_A          300 TVLTVTAPLSAKIDP--PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH------SESVLRIESVKKEDKG  366 (388)
T ss_dssp             EEEEEEEEEEEEEES--SEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSC------CSSEEEESSCCGGGCE
T ss_pred             EEEEEeCCCccccCC--CcEEecCCCCEEEEEEeccccCCeEEEEECCEECcc------CCCEEEEecCChhhCE
Confidence            778888777665544  356788999999999999999999999999988643      2467999999998875

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.78  E-value=2.1e-18  Score=124.94  Aligned_cols=145  Identities=19%  Similarity=0.272  Sum_probs=107.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCce-E
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKS-Q   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~-~   80 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+..      ....++..... .....|.|.+++.+|+|.|+|.+.+. +... .
T Consensus       228 ~~v~l~C~~~g~p~~~i~W~~-~g~~~~~------~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  299 (395)
T 1bih_A          228 DVTMIYCMYGSNPMGYPNYFK-NGKDVNG------NPEDRITRHNR-TSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH  299 (395)
T ss_dssp             SCEEEEEEEECSSCCCCEEEE-TTEECCC------CTTSSEESCSS-STTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             CcEEEEEEeccCCCCeEEEEE-CCEEcCC------CCceeEEEEec-CCCceEEEccCChhhCEEEEEEEEeCCCCceEE
Confidence            357888999999999999999 5544321      11222222111 12237999999999999999999766 3323 3


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      .+.|.|..+|.+...+.. ...+.+|+++.|.|.+.|.|.|.+.|++++..+... +....++.|+|.+++.+|.+.
T Consensus       300 ~~~l~V~~~P~~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~~L~i~~~~~~d~G~  374 (395)
T 1bih_A          300 SLKLTVVSAPKYEQKPEK-VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTDSGLVIKGVKNGDKGY  374 (395)
T ss_dssp             EEEEEEEEEEEEEECCCS-EEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEETTEEEESSCCSTTCEE
T ss_pred             EEEEEEEcCCccccCCCc-ceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEECCEEEEeeCCcccCEE
Confidence            678888888887765532 367889999999999999999999999999887543 444556789999999998763

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.78  E-value=1.8e-18  Score=120.55  Aligned_cols=143  Identities=22%  Similarity=0.315  Sum_probs=103.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc---e
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK---S   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~---~   79 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+..      ....++.....+    +|.|.+++.+|+|.|+|.+.+....   .
T Consensus       114 ~~v~l~C~~~~~p~~~v~W~~-~~~~~~~------~~~~~~~~~~~~----~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~  182 (291)
T 2wim_A          114 EDAEVVCRVSSSPAPAVSWLY-HNEEVTT------ISDNRFAMLANN----NLQILNINKSDEGIYRCEGRVEARGEIDF  182 (291)
T ss_dssp             SCEEECCCCBCSSCCEEEEEC-C----CB------CCCSSEEECTTS----CEEETTCCGGGCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEEEccCCCCEEEEEE-CCccccc------cCCceEEEccCC----CEEEEecchhhCEEEEEEEEECCCCeeEE
Confidence            357888998889999999999 4443321      123445444433    7999999999999999999766322   2


Q ss_pred             EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--EeceEEEEcchhhhHh
Q psy16425         80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~  156 (163)
                      ....+.+..+|.+...+......+.+|+.+.|.|.+.|.|.|.+.|++++..+........  .+..|.|.+++.+|.+
T Consensus       183 ~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  261 (291)
T 2wim_A          183 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGG  261 (291)
T ss_dssp             EEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCE
T ss_pred             eeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCE
Confidence            3456777778876654322234577899999999999999999999999988765544332  3467999999998875

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.77  E-value=2.9e-18  Score=114.69  Aligned_cols=151  Identities=15%  Similarity=0.232  Sum_probs=100.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--CceEE--e-eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQTIL--T-IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~~~--~-~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..+.|.|...+.+.+.|.|++.+  .....  . .........+|+.... ..++++|.|.+++.+|+|.|.|.+.+...
T Consensus        16 ~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   94 (213)
T 3mj8_L           16 QKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN-SGNMATLTISKAQAGDEADYYCQSWDGTN   94 (213)
T ss_dssp             SCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEEETTT
T ss_pred             CCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe-cCCEEEEEECCCChhhCEEEEEEeccCCc
Confidence            46889999998999999999842  11111  0 0011111345666554 34567899999999999999999977643


Q ss_pred             ----ceEeEEEEEE----cCCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCeEEEec---------CCc
Q psy16425         78 ----KSQVGYLEVV----VPPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGGELIAQ---------GNG  138 (163)
Q Consensus        78 ----~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~~~---------~~~  138 (163)
                          ......|.|.    .+|.+...+.  ...+.+|+.+.|.|.+.+. |+ +.+.|++++..+...         ...
T Consensus        95 ~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~  172 (213)
T 3mj8_L           95 SAWVFGSGTKVTVLGQPNAAPSVTLFPP--SSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSK  172 (213)
T ss_dssp             TEEEEBCCEEEEEECSCCBCCEEEEECC--CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTE
T ss_pred             ceeEEcCceEEEEeCCCCCCCeEEccCC--CcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCc
Confidence                2445677777    4555544332  2223479999999999885 44 489999999887431         111


Q ss_pred             eEEeceEEEEcchhhhHh
Q psy16425        139 QEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       139 ~~~~~~l~i~~v~~~~~~  156 (163)
                      ......|+|..+..+|.+
T Consensus       173 ~~~~s~L~i~~~~~~d~G  190 (213)
T 3mj8_L          173 YMATSYLTMTADAWKSRN  190 (213)
T ss_dssp             EEEEEEEEEESHHHHSCS
T ss_pred             EEEEEEEEEeHHHcCCCC
Confidence            123356889988888765

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.77  E-value=5.1e-18  Score=119.08  Aligned_cols=146  Identities=21%  Similarity=0.251  Sum_probs=104.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.+.|.|++ ++..+.       ....++.......+..+|.|.+++.+|+|.|+|.+.+. +.....
T Consensus        20 ~~v~l~C~~~g~p~~~v~W~~-~~~~~~-------~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   91 (305)
T 2nzi_A           20 SNATLVCKVTGHPKPIVKWYR-QGKEII-------ADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT   91 (305)
T ss_dssp             CCEEEEEEEECSSCCEEEEEE-TTEECC-------CCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEeCCCCCeEEEEE-CCEEcc-------cCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccce
Confidence            468899999999999999999 554432       12234554444445568999999999999999999776 334455


Q ss_pred             EEEEEEcCCcccccC---CCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEc-chhh
Q psy16425         82 GYLEVVVPPDILDYP---TSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTK-KKKK  153 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~---~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~-v~~~  153 (163)
                      +.|.|..+|.+....   ......+.+|+.+.|.|.+.+.|.|.+.|++++..+........    ....|.|.+ +..+
T Consensus        92 ~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  171 (305)
T 2nzi_A           92 ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK  171 (305)
T ss_dssp             EEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCST
T ss_pred             EEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccC
Confidence            667776655432211   11346678899999999999999999999999887755444332    335788888 8887


Q ss_pred             hHh
Q psy16425        154 KKK  156 (163)
Q Consensus       154 ~~~  156 (163)
                      |.+
T Consensus       172 d~G  174 (305)
T 2nzi_A          172 DAG  174 (305)
T ss_dssp             TCE
T ss_pred             ccE
Confidence            765

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.77  E-value=3.2e-18  Score=125.91  Aligned_cols=124  Identities=15%  Similarity=0.223  Sum_probs=89.6

Q ss_pred             ceeEEEeeeec-cCCCEEEEEEcCCceEEeee---eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc
Q psy16425          3 ARMLIEIGEML-MAESTVAWLRVDTQTILTIQ---THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK   78 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   78 (163)
                      ..+.|.|...+ .|.+.|.|++. +..+....   ..... ..+...     ...+|.|.+++.+|+|.|+|.+.|.  .
T Consensus       243 ~~v~L~C~~~g~~p~p~i~W~k~-g~~l~~~~~~~~~~~~-~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N~--~  313 (423)
T 3qs7_E          243 EPLWIRCKAVHVNHGFGLTWELE-NKALEEGNYFEMSTYS-TNRTMI-----RILFAFVSSVARNDTGYYTCSSSKH--P  313 (423)
T ss_dssp             SCEEEEEEEEESSSCCCEEEEES-SSBCCGGGEEEEEEEE-TTTEEE-----EEEEEEESSCCTTTCEEEEEEETTE--E
T ss_pred             CeEEEEEEEEcCCCCcEEEEEEC-CEEccccceeeccccc-CCceeE-----EEEEEEEeecCHHHCEEEEEEEecC--C
Confidence            36888999988 67799999994 44432110   00001 111111     1237999999999999999999766  6


Q ss_pred             eEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec
Q psy16425         79 SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ  135 (163)
Q Consensus        79 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~  135 (163)
                      ...+.|.|..+|.+...+......+.+|+++.|.|.+.|+|.|.+.|++++..+...
T Consensus       314 ~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~  370 (423)
T 3qs7_E          314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE  370 (423)
T ss_dssp             EEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECB
T ss_pred             CceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCc
Confidence            677788888888766555434566788999999999999999999999999988654

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.77  E-value=2e-18  Score=114.66  Aligned_cols=143  Identities=15%  Similarity=0.189  Sum_probs=92.9

Q ss_pred             ceeEEEeeeeccCC-----CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCC--CceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAE-----STVAWLRVDTQTILTIQTHVITKNHRIGVTHSE--TKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-----~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|...+.|.     +.|.|++.++...        ...+|+.+....  .++.+|.|.+++.+|+|.|+|.+.+.
T Consensus        18 ~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~--------~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   89 (202)
T 3bp6_B           18 SSVSLECDFDRRECTELEGIRASLQKVENDTS--------LQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICG   89 (202)
T ss_dssp             SCEEEEEEECTTC---CTTEEEEEEECC--CC--------CBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CcEEEEEEecCCCCCCccceEEEEEcCCCccc--------ccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeC
Confidence            46889999888876     8999999433322        233455544431  24568999999999999999999766


Q ss_pred             CC-ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEE--eceEEEEcchh
Q psy16425         76 PM-KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQED--FPFFKRTKKKK  152 (163)
Q Consensus        76 ~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~--~~~l~i~~v~~  152 (163)
                      .. ....+.|.|..++.....   ......+|+.+.|.|.+.|+|.|.+.|++++..+.........  ...+.|.++..
T Consensus        90 ~~~~~~~~~l~V~~~~~~p~~---~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  166 (202)
T 3bp6_B           90 AAWDYKYLTVKVKASYMRIDT---RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKP  166 (202)
T ss_dssp             TEEEEEEEEEEEEBCCCCEEE---EEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEEEEECTTSCEEEEEEEEECC
T ss_pred             CCcceEEEEEEecCCCCcccE---EEEecCCCCeEEEEEEccccCCceEEEEeCCCCccCceeeCCCCCEEEEEEEEEEc
Confidence            32 345556666655422211   1124568999999999999999999999988754322111111  13445567766


Q ss_pred             hhHh
Q psy16425        153 KKKK  156 (163)
Q Consensus       153 ~~~~  156 (163)
                      +|.+
T Consensus       167 ~d~G  170 (202)
T 3bp6_B          167 QPSR  170 (202)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            6643

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.77  E-value=3.4e-18  Score=116.24  Aligned_cols=145  Identities=20%  Similarity=0.338  Sum_probs=98.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+...     ..........   ...+|.|.+++.+|+|.|+|.+.+. +.....
T Consensus        31 ~~v~L~C~~~~~p~~~v~W~~-~~~~~~~~-----~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~  101 (241)
T 3grw_A           31 NTVRFRCPAAGNPTPSISWLK-NGREFRGE-----HRIGGIKLRH---QQWSLVMESVVPSDRGNYTCVVENKFGSIRQT  101 (241)
T ss_dssp             SEEEEECCEECSSCCEEEEEE-TTEECCGG-----GSTTCCEEEG---GGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEecCCCCceeEEEE-CCcccCCC-----Ccccceeeec---cceEEEEEeCCcccCEEEEEEEeecCCceEEE
Confidence            468899999999999999999 55443211     0011111211   2338999999999999999999765 334455


Q ss_pred             EEEEEEcCCc---ccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEE----CCeEEEecCCce------------EEe
Q psy16425         82 GYLEVVVPPD---ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR----EGGELIAQGNGQ------------EDF  142 (163)
Q Consensus        82 ~~l~v~~~p~---~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~----~~~~~~~~~~~~------------~~~  142 (163)
                      ..+.|...+.   ...........+.+|+.+.|.|.+.+.|.|.+.|++    ++..+.......            ...
T Consensus       102 ~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  181 (241)
T 3grw_A          102 YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEAD  181 (241)
T ss_dssp             EEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEE
T ss_pred             EEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCc
Confidence            6667765321   111112235668889999999999999999999999    665553332211            145


Q ss_pred             ceEEEEcchhhhHh
Q psy16425        143 PFFKRTKKKKKKKK  156 (163)
Q Consensus       143 ~~l~i~~v~~~~~~  156 (163)
                      ..|.|.+++.+|.+
T Consensus       182 ~~L~i~~~~~~d~G  195 (241)
T 3grw_A          182 VRLRLANVSERDGG  195 (241)
T ss_dssp             EEEEECSCCGGGCE
T ss_pred             eEEEECcCCcccCc
Confidence            67999999988865

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.77  E-value=1.2e-18  Score=115.77  Aligned_cols=147  Identities=16%  Similarity=0.208  Sum_probs=105.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEee-ee--eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC---
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTI-QT--HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP---   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~-~~--~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~---   76 (163)
                      ..+.|.|...+.|.+.|.|++.+....... ..  .......|+....     .+|.|.+++.+|+|.|+|.+.+..   
T Consensus        20 ~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~g~~   94 (209)
T 1nbq_A           20 NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-----TGITFKSVTREDTGTYTCMVSEEGGNS   94 (209)
T ss_dssp             CCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-----TEEECSCCCTTSCSEEEEEEEETTSSC
T ss_pred             CCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec-----cEEEEeeCCHHHCcEEEEEEecCCCCc
Confidence            367888998888999999999544321110 00  0012234555554     289999999999999999997652   


Q ss_pred             CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEecCCc-----------eEEece
Q psy16425         77 MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQGNG-----------QEDFPF  144 (163)
Q Consensus        77 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~-----------~~~~~~  144 (163)
                      .......|.|..+|.+.....  ...+.+|+.+.|.|.+ .+.|.|.+.|++++..+......           ....+.
T Consensus        95 ~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (209)
T 1nbq_A           95 YGEVKVKLIVLVPPSKPTVNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGE  172 (209)
T ss_dssp             EECCEEECCEEBCCCCCCCCC--BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCC
T ss_pred             cceEEEEEEEecCCcCCCccc--ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcce
Confidence            234456778888887665443  3457889999999997 89999999999999877544321           114468


Q ss_pred             EEEEcchhhhHh
Q psy16425        145 FKRTKKKKKKKK  156 (163)
Q Consensus       145 l~i~~v~~~~~~  156 (163)
                      |.|.+++.+|.+
T Consensus       173 L~i~~~~~~d~G  184 (209)
T 1nbq_A          173 LVFDPLSASDTG  184 (209)
T ss_dssp             EEESSCCGGGCC
T ss_pred             EEEEeccccCCe
Confidence            999999999875

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.76  E-value=3.8e-17  Score=109.10  Aligned_cols=126  Identities=19%  Similarity=0.227  Sum_probs=97.1

Q ss_pred             ceeEEEeeeeccCCCE-EEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          3 ARMLIEIGEMLMAEST-VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~-i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ..+.|.|...+.|.+. |.|++ ++..+..        ..           .+|.|.+++.+|+|.|+|.+.+ ...+..
T Consensus        23 ~~v~L~C~~~~~p~~~~v~W~k-~g~~l~~--------~~-----------~~L~i~~v~~~D~G~Y~C~a~n-~~~s~~   81 (204)
T 3sgj_C           23 DSVTLKCQGAYSPEDQSTQWFH-NESLISS--------QA-----------SSYFIDAATVDDSGEYRCQTQL-STLSDP   81 (204)
T ss_dssp             CCEEEEEECCSSSSCCCEEEEE-TTEEESC--------CS-----------SEEEESSCCGGGCEEEEEEETT-SBCCCC
T ss_pred             CCEEEEEcCCCCCCCcEEEEEE-CCEEccc--------Cc-----------cEEEEecccccCCEEEEEEeCC-Cccccc
Confidence            4688999998888776 99999 5554411        11           2899999999999999999954 445566


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..+|.+...+   ...+.+|+++.|.|.+.+. |.+.+.|++++..+..    ...++.|.|.+++.+|.+
T Consensus        82 ~~l~V~~~p~~~~~~---~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~----~~~~~~L~i~~v~~~D~G  150 (204)
T 3sgj_C           82 VQLEVHIGWLLLQAP---RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY----FHHNSDFYIPKATLKDSG  150 (204)
T ss_dssp             EEEEEECSSEEEECS---CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----EEECCCEEESSCCGGGCE
T ss_pred             EEEEEecCceEecCC---ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec----ccCCceEEECcCCcccCE
Confidence            788888877665544   3567889999999999765 6688999999988643    234567999999998875

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.76  E-value=5.9e-18  Score=114.11  Aligned_cols=145  Identities=18%  Similarity=0.285  Sum_probs=98.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+....     .........   ++.+|.|.+++.+|+|.|+|.+.+. +.....
T Consensus        35 ~~v~L~C~~~~~p~~~v~W~~-~~~~~~~~~-----~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~  105 (231)
T 3ojm_B           35 NTVKFRCPAGGNPMPTMRWLK-NGKEFKQEH-----RIGGYKVRN---QHWSLIMESVVPSDKGNYTCVVENEYGSINHT  105 (231)
T ss_dssp             SCEEEECCEEEESCCEEEEEE-TTEECCGGG-----STTCCEEEG---GGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCEEEEEecccCCCCeEEEEE-CCccccccc-----cccceeeec---CcceEEEecCCcccCEEEEEEEecccCccccc
Confidence            468899999999999999999 554432110     001111111   2348999999999999999999765 334455


Q ss_pred             EEEEEEcCCc---ccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEE----CCeEEEecCCce-----------EEec
Q psy16425         82 GYLEVVVPPD---ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR----EGGELIAQGNGQ-----------EDFP  143 (163)
Q Consensus        82 ~~l~v~~~p~---~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~----~~~~~~~~~~~~-----------~~~~  143 (163)
                      ..+.|...+.   ...........+.+|+.+.|.|.+.+.|.|.+.|++    ++..+.......           ....
T Consensus       106 ~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  185 (231)
T 3ojm_B          106 YHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE  185 (231)
T ss_dssp             EEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTT
T ss_pred             EEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCcc
Confidence            6677765332   222122245678899999999999999999999999    665443222111           1335


Q ss_pred             eEEEEcchhhhHh
Q psy16425        144 FFKRTKKKKKKKK  156 (163)
Q Consensus       144 ~l~i~~v~~~~~~  156 (163)
                      .|.|.+++.+|.+
T Consensus       186 ~L~i~~~~~~d~G  198 (231)
T 3ojm_B          186 VLALFNVTEADAG  198 (231)
T ss_dssp             EEEECSCCGGGCE
T ss_pred             EEEEecCCHHHCe
Confidence            6999999998865

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.76  E-value=1.1e-17  Score=112.54  Aligned_cols=128  Identities=23%  Similarity=0.322  Sum_probs=96.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--eE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--SQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~~   80 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+..        .          ...+|.|.+++.+|+|.|+|.+.+....  +.
T Consensus        34 ~~v~L~C~~~~~p~~~v~W~~-~~~~~~~--------~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~   94 (218)
T 3k0w_A           34 QFVKLCCRATGHPFVQYQWFK-MNKEIPN--------G----------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQ   94 (218)
T ss_dssp             SBEEEECEETTTTSSEEEEEE-TTEECTT--------C----------CSSEEEETTCCGGGCEEEEEEEECTTCCEECC
T ss_pred             CcEEEEeeecCCCCCEEEEEE-CCEECCC--------C----------CCCEEEEccCChhhCeEeEEEEEcCCCCceee
Confidence            468899999999999999999 4443311        0          1238999999999999999999766322  44


Q ss_pred             eEEEEEEcCC---------------cccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceE
Q psy16425         81 VGYLEVVVPP---------------DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFF  145 (163)
Q Consensus        81 ~~~l~v~~~p---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l  145 (163)
                      .+.|.|...+               .+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+...     ....|
T Consensus        95 ~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~-----~~~~L  167 (218)
T 3k0w_A           95 WSQLDVCDIPESFQRSVDGVSESKLQICVEP--TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----TKKLY  167 (218)
T ss_dssp             CEEEEEECCCGGGCTTCCSBCCSSCEEEECC--CCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC-----CSSEE
T ss_pred             EEEEEEEccCcccccccccccCCCceEEECC--CceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC-----CCCEE
Confidence            4677777653               232222  3567889999999999999999999999999876433     23568


Q ss_pred             EEEcchhhhHh
Q psy16425        146 KRTKKKKKKKK  156 (163)
Q Consensus       146 ~i~~v~~~~~~  156 (163)
                      .|.+++.+|.+
T Consensus       168 ~i~~v~~~d~G  178 (218)
T 3k0w_A          168 MVPYVDLEHQG  178 (218)
T ss_dssp             EESSCCGGGCE
T ss_pred             EEeecChhcCE
Confidence            89888888865

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.76  E-value=5.6e-18  Score=112.22  Aligned_cols=138  Identities=16%  Similarity=0.129  Sum_probs=84.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC---Cce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP---MKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~---~~~   79 (163)
                      .++.|.|...+.|. .+.|+| ++..+.....          ..........|.|.+++.+|+|.|+|.+.+..   ..+
T Consensus        20 ~~v~L~C~~~~~~~-~~~W~k-~g~~~~~~~~----------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s   87 (196)
T 2d3v_A           20 NSVTIRCQGTLEAQ-EYRLVK-EGSPEPWDTQ----------NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPS   87 (196)
T ss_dssp             CCEEEEEECCTTCC-EEEEEE-TTCSSCSEEE----------CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCC
T ss_pred             CeEEEEEeCCCCCc-EEEEEE-CCCCCCcccc----------cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcC
Confidence            46888998887766 999999 4443311100          00011234589999999999999999997653   223


Q ss_pred             EeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc------eEEeceEEEEcc
Q psy16425         80 QVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG------QEDFPFFKRTKK  150 (163)
Q Consensus        80 ~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~------~~~~~~l~i~~v  150 (163)
                      ..+.|.|..   +|.+...   ....+.+|+++.|.|.+.+.| +.+.|++++..+......      ....+.|.|.+|
T Consensus        88 ~~~~l~V~~~~~~p~i~~~---~~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v  163 (196)
T 2d3v_A           88 DPLELVVTGFYNKPTLSAL---PSPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPV  163 (196)
T ss_dssp             CCEEEEEECSSCCCEEEC--------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCC
T ss_pred             ccEEEEecCCCCCCeEEcc---CCccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeec
Confidence            456777776   3333322   234678999999999999988 899999999876322111      113368999999


Q ss_pred             hhhhHh
Q psy16425        151 KKKKKK  156 (163)
Q Consensus       151 ~~~~~~  156 (163)
                      +.+|++
T Consensus       164 ~~~D~G  169 (196)
T 2d3v_A          164 TPSHRW  169 (196)
T ss_dssp             BTTBCE
T ss_pred             CcccCe
Confidence            999876

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.76  E-value=1.3e-17  Score=109.17  Aligned_cols=139  Identities=16%  Similarity=0.219  Sum_probs=95.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeee-eEE----ecCCeEEEEeC--CCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQT-HVI----TKNHRIGVTHS--ETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~-~~~----~~~~r~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|...+.|.+.|.|++.+...+..... ...    ....|+.....  ..+..+|.|.+++.+|+|.|+|.+.+.
T Consensus        11 ~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~   90 (184)
T 2ny1_B           11 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQ   90 (184)
T ss_dssp             SCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTE
T ss_pred             CCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEEEEEEcC
Confidence            46888999888999999999954332221111 001    11334444332  223457999999999999999999543


Q ss_pred             CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhH
Q psy16425         76 PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKK  155 (163)
Q Consensus        76 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~  155 (163)
                         ...+.|.|..   +.. +  ....+.+|+++.|.|.+.+.|.|.+.|++++..+      ......|.|.+++.+|+
T Consensus        91 ---~~~~~l~V~~---~~~-~--~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i~~v~~~d~  155 (184)
T 2ny1_B           91 ---KEEVQLLVFG---LTA-N--SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVSQLELQDS  155 (184)
T ss_dssp             ---EEEEEEEEEE---EEE-S--SCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------EEESSEEEESSCCGGGC
T ss_pred             ---CCcEEEEEEE---ecC-C--CCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------ccCceEEEEecCCcCCC
Confidence               2244555553   111 1  2346789999999999999999999999998665      33557799999999987


Q ss_pred             h
Q psy16425        156 K  156 (163)
Q Consensus       156 ~  156 (163)
                      +
T Consensus       156 G  156 (184)
T 2ny1_B          156 G  156 (184)
T ss_dssp             E
T ss_pred             e
Confidence            6

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.76  E-value=3.7e-17  Score=108.98  Aligned_cols=139  Identities=12%  Similarity=0.100  Sum_probs=94.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-CceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-MKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~~   81 (163)
                      .++.|.|...+.|.+.|.|++..+..+          .++....   .....|.|.+++.+|+|.|.|.+.+.. ..+..
T Consensus        17 ~~v~L~C~~~g~P~p~i~W~~~~~~~~----------~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~   83 (202)
T 1vca_A           17 DSVSLTCSTTGCESPFFSWRTQIDSPL----------NGKVTNE---GTTSTLTMNPVSFGNEHSYLCTATCESRKLEKG   83 (202)
T ss_dssp             SCEEEEEEEESCSSCEEEEEETTCCCC----------SSEEEEE---TTEEEEEESSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEeecCCCCCeEEEECCCCCCc----------cceEEEc---CCccEEEECcCCHHHCEEEEEEEEECCceEeeE
Confidence            468899999989999999998432221          1111111   123479999999999999999997763 34456


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CC--CeEEEEECCeEEEecCCc--------eEEeceEEEEcc
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PK--PNITWRREGGELIAQGNG--------QEDFPFFKRTKK  150 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--p~v~W~~~~~~~~~~~~~--------~~~~~~l~i~~v  150 (163)
                      +.|.|..+|.......  ...+.+|+.+.|.|.+.+. |.  +.++|++++..+......        ......|+|..+
T Consensus        84 ~~l~V~~~p~~~~~~~--~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~  161 (202)
T 1vca_A           84 IQVEIYSFPKDPEIHL--SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV  161 (202)
T ss_dssp             EEEEEEBCCSCCEEEE--SSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCC
T ss_pred             EEEEEEeCCCCCEeCC--ceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEee
Confidence            6788887776443332  2457899999999999875 43  369999999887543211        112345567766


Q ss_pred             hhhhHh
Q psy16425        151 KKKKKK  156 (163)
Q Consensus       151 ~~~~~~  156 (163)
                      ..+|.+
T Consensus       162 ~~d~~g  167 (202)
T 1vca_A          162 IEDIGK  167 (202)
T ss_dssp             GGGTTC
T ss_pred             eccCCC
Confidence            655543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.76  E-value=1.2e-17  Score=117.39  Aligned_cols=140  Identities=14%  Similarity=0.148  Sum_probs=98.4

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeEEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYL   84 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~l   84 (163)
                      +.|.|. .+.|.+.|.|++ ++..+        ....|+.....+ +..+|.|.+++.+|+|.|+|.+.+.........+
T Consensus        21 l~~~~~-~~~p~~~v~W~k-~~~~i--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l   89 (312)
T 2y23_A           21 LNFECD-KMTPKSEFSWSK-DYVST--------EDSPRLEVESKG-NKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLI   89 (312)
T ss_dssp             EEEECS-SCCTTCCEEEEE-TTEEC--------TTCTTEEEEEET-TEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEE
T ss_pred             EEEEEe-CCCCCcEEEEEE-CCEEC--------CCCCCEEEEEeC-CEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEE
Confidence            344454 567899999999 55544        234455555432 3458999999999999999999765433334444


Q ss_pred             EEEc------------CCcccccCCCCcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCceEEe------ceE
Q psy16425         85 EVVV------------PPDILDYPTSTDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQEDF------PFF  145 (163)
Q Consensus        85 ~v~~------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~~~------~~l  145 (163)
                      .+..            +|.+...+. ....+.+|+.+.|.|.+. +.|.|.+.|++++..+..........      ..|
T Consensus        90 ~v~~~~~~~~~~~~~~~p~~~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L  168 (312)
T 2y23_A           90 DEEELKRLLALSHEHKFPTVPVKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM  168 (312)
T ss_dssp             CHHHHHHHHHHHHHHHSCBCCEEEE-EEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEE
T ss_pred             EEeeeeeeecccccCCCCccccccC-CceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEE
Confidence            4432            454443221 256788999999999998 89999999999999886655443321      239


Q ss_pred             EEEcchhhhHh
Q psy16425        146 KRTKKKKKKKK  156 (163)
Q Consensus       146 ~i~~v~~~~~~  156 (163)
                      .|.+++.+|++
T Consensus       169 ~i~~~~~~d~G  179 (312)
T 2y23_A          169 FMEKLQDEDEG  179 (312)
T ss_dssp             EESCCCGGGCE
T ss_pred             EEccCCcccCE
Confidence            99999999876

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.76  E-value=1.4e-17  Score=117.47  Aligned_cols=142  Identities=15%  Similarity=0.127  Sum_probs=98.1

Q ss_pred             eEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCc--eE
Q psy16425          5 MLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMK--SQ   80 (163)
Q Consensus         5 ~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~--~~   80 (163)
                      +++.|.. .+.|.+.+.|++ ++..+...........+++....      .|.|.++...|+|.|+|.+.+. +..  ..
T Consensus       135 ~~~~C~~~~~~P~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~s------~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  207 (313)
T 4fqp_A          135 PMARCVSTGGRPPAQITWHS-DLGGMPNTSQVPGFLSGTVTVTS------LWILVPSSQVDGKNVTCKVEHESFEKPQLL  207 (313)
T ss_dssp             EEEEEEEEEEBSCCEEEEEE-TTCCEEEEEEEECSSTTCEEEEE------EEEECCCGGGTTCEEEEEEECTTSSSCEEE
T ss_pred             EEEEEEccCccCCcEEEeec-CCccccccceeeeecccccccce------eeeecccccccCeeEEEEEEccCcCcccee
Confidence            4555654 478899999999 45444332222222333333322      6899999999999999999775 222  33


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...|.|.++|.+...+. ....+.+|+.+.|.|.+.|+|.| .+.|++++..+..  .....++.|.|.+++.+|++
T Consensus       208 ~~~l~V~~~P~v~~~~~-~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~--~~~~~~~~L~i~~v~~~d~G  281 (313)
T 4fqp_A          208 TVNLTVYYPPEVSISGY-DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP--FAVAQGAQLLIRPVDKPINT  281 (313)
T ss_dssp             EEECCBCEEEEEEEECC-CSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCT--TEEEETTEEEECCCSSCCEE
T ss_pred             eeecccccCCccccccc-cceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCC--ceEEeCCEEEECcCChhhCE
Confidence            44556666776654333 24556788999999999999999 6999999987632  23346678999999998875

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.75  E-value=3e-17  Score=117.33  Aligned_cols=150  Identities=17%  Similarity=0.134  Sum_probs=101.1

Q ss_pred             ceeEEEeeeeccC-----------CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425          3 ARMLIEIGEMLMA-----------ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         3 ~~~~~~~~~~~~~-----------~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      ..+.|.|...+.|           .+.|.|++.+................++.....     +|.|.+++.+|+|.|+|.
T Consensus        23 ~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~~~~~D~G~Y~C~   97 (349)
T 4dep_C           23 EPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD-----VLWFRPTLLNDTGNYTCM   97 (349)
T ss_dssp             SCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETT-----EEEESSCCGGGCEEEEEE
T ss_pred             CeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCC-----EEEEccCChhhCEEEEEE
Confidence            3678888887655           499999995421100000000012234433322     899999999999999999


Q ss_pred             EEeC-CCceEeEEEEEEcCCcccccCC--CCcEEEeCCCcEEEEeEe-----ccCCCCeEEEEECCeEEEecCCceEEec
Q psy16425         72 VNTD-PMKSQVGYLEVVVPPDILDYPT--STDMVIREGSNVTLKCAA-----SGSPKPNITWRREGGELIAQGNGQEDFP  143 (163)
Q Consensus        72 ~~~~-~~~~~~~~l~v~~~p~~~~~~~--~~~~~~~~g~~~~l~C~~-----~~~p~p~v~W~~~~~~~~~~~~~~~~~~  143 (163)
                      +.+. +.....+.|.|..+|.......  .....+.+|+.+.|.|.+     .+.|.|.+.|++++..+.........+.
T Consensus        98 a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~~~  177 (349)
T 4dep_C           98 LRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM  177 (349)
T ss_dssp             EECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEETT
T ss_pred             EecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeecCC
Confidence            9765 3344556777777654332221  124567889999999985     6789999999999998754444445667


Q ss_pred             eEEEEcchhhhHhh
Q psy16425        144 FFKRTKKKKKKKKK  157 (163)
Q Consensus       144 ~l~i~~v~~~~~~~  157 (163)
                      .|.|.+++.+|.+.
T Consensus       178 ~L~i~~v~~~d~G~  191 (349)
T 4dep_C          178 NLSFLIALISNNGN  191 (349)
T ss_dssp             EEEEESCCGGGCEE
T ss_pred             EEEEeeeeecCCcE
Confidence            89999999998763

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.75  E-value=7.4e-17  Score=114.74  Aligned_cols=138  Identities=15%  Similarity=0.273  Sum_probs=99.9

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC---CCc
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD---PMK   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~---~~~   78 (163)
                      ..+.|.|...+.| .+.|.|++ ++..+.       ....++... .+    .|.|.+++.+|+|.|+|.+.+.   +..
T Consensus       144 ~~v~L~C~~~g~p~~~~i~W~k-~~~~l~-------~~~~~~~~~-~~----~L~I~~v~~~D~G~Y~C~a~n~~~~g~~  210 (329)
T 3oq3_B          144 YGIDLYCGILYAKHYNNITWYK-NNQELI-------IDGTKYSQS-GQ----NLIIHNPELEDSGRYDCYVHYDDVRIKN  210 (329)
T ss_dssp             TCEEEECCCCSCCCCCEEEEEE-TTEECC-------CSSSSEEEE-TT----EEEECSCCGGGCEEEEEEEEECCTTSSS
T ss_pred             CcEEEEeccCCCCCCceEEEEE-CCccCC-------CCCceEecC-CC----EEEEeecChhhCEEEEEEEEecccCCCc
Confidence            3688999999999 89999999 554431       123344433 22    8999999999999999999763   222


Q ss_pred             eE----eEEEEEEcCC----cccccCCCCcEEEeCCCcEEEEeEeccCC---CC-eEEEEECCeEEEecCCce-------
Q psy16425         79 SQ----VGYLEVVVPP----DILDYPTSTDMVIREGSNVTLKCAASGSP---KP-NITWRREGGELIAQGNGQ-------  139 (163)
Q Consensus        79 ~~----~~~l~v~~~p----~~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~p-~v~W~~~~~~~~~~~~~~-------  139 (163)
                      ..    .+.|.|..+|    .+. .+  ....+.+|+.+.|.|.+.+.|   .| .+.|++++..+.......       
T Consensus       211 ~~~~s~~~~l~V~~~~~~~~~~~-~~--~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~  287 (329)
T 3oq3_B          211 DIVVSRCKILTVIPSQDHRFKLI-LD--PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSS  287 (329)
T ss_dssp             CEEEEEEEEEEEECCCCCCEEEE-CC--SEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEE
T ss_pred             eeEEEeeEEEEEECCCCCCCcee-cC--CeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeeccc
Confidence            22    2567777666    222 22  357788999999999999988   77 889999998753332211       


Q ss_pred             --EEeceEEEEcchhhhHh
Q psy16425        140 --EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 --~~~~~l~i~~v~~~~~~  156 (163)
                        .....|+|.+++.+|.+
T Consensus       288 ~~~~~~~L~I~~v~~~D~G  306 (329)
T 3oq3_B          288 GGITEATLYFENVTEEYIG  306 (329)
T ss_dssp             TTEEEEEEEESSCCGGGTT
T ss_pred             CceeEeEEEEEeccHHHCC
Confidence              14578999999999987

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.75  E-value=6.8e-17  Score=108.52  Aligned_cols=126  Identities=21%  Similarity=0.276  Sum_probs=86.6

Q ss_pred             ceeEEEeeeeccC-----CCEEEEEEcCCceEEeeee-eE------EecCCeEEEEeC--CCceEEEEEcccCCCCCeEE
Q psy16425          3 ARMLIEIGEMLMA-----ESTVAWLRVDTQTILTIQT-HV------ITKNHRIGVTHS--ETKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         3 ~~~~~~~~~~~~~-----~~~i~W~k~~~~~~~~~~~-~~------~~~~~r~~~~~~--~~~~~~L~i~~v~~~d~G~Y   68 (163)
                      .++.|.|...+.|     .+.|.|++.+ ..+..... ..      ....+|..+...  ..++.+|.|.+++.+|+|.|
T Consensus        17 ~~v~L~C~~~~~p~~~~~~~~v~W~~~~-~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   95 (222)
T 3sbw_C           17 SNMTIECKFPVEKQLDLAALIVYWEMED-KNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVY   95 (222)
T ss_dssp             SCEEEEEECCCCSSCCTTTCEEEEEETT-EEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGGGCEEE
T ss_pred             CcEEEEeEecCCCCCCCccEEEEEEECC-cEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccccCeEE
Confidence            4688889876555     4589999943 33322211 10      112356665543  24567999999999999999


Q ss_pred             EEEEEeCCCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeE
Q psy16425         69 MCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGE  131 (163)
Q Consensus        69 ~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~  131 (163)
                      +|.+.+.+.....+.|.|..++......  ....+.+|+.+.|.|.+.|.|.|.+.|+++++.
T Consensus        96 ~C~~~~~~~~~~~~~l~V~~~~~~~~~~--~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~  156 (222)
T 3sbw_C           96 RCMISYGGADYKRITVKVNAPYNKINQR--ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQ  156 (222)
T ss_dssp             EEEEESSSEEEEEEEEEEEBCCCCCEEE--EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCC
T ss_pred             EEEEEeCCCceeEEEEEEECCCCCCCce--eeeeecCCCcEEEEEEecCCCCCeEEEEECCCc
Confidence            9999775545556677777665443211  112567899999999999999999999998443

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.75  E-value=2.9e-18  Score=113.37  Aligned_cols=142  Identities=25%  Similarity=0.329  Sum_probs=96.1

Q ss_pred             ceeEEEee-eeccCC-CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-Cce
Q psy16425          3 ARMLIEIG-EMLMAE-STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-MKS   79 (163)
Q Consensus         3 ~~~~~~~~-~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~~   79 (163)
                      ..+.|.|. ..+.|. +.|.|++. +..+..      ....+......   +.+|.|.+++.+|+|.|+|.+.+.. ...
T Consensus        24 ~~v~L~C~~~~~~p~~~~v~W~~~-~~~~~~------~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   93 (201)
T 3s97_C           24 KGMVLLCDPPYHFPDDLSYRWLLN-EFPVFI------TMDKRRFVSQT---NGNLYIANVEASDKGNYSCFVSSPSITKS   93 (201)
T ss_dssp             CCEEECCCCCSEESSCCEEEEEES-STTCBC------CCSSSEEECTT---TCCEEESSCCGGGCEEEEEEEEEGGGTEE
T ss_pred             CCEEEeccccccCCCceEEEEEEC-Cceeee------eeCCCeEEEcC---CCeEEECcCCcccCeEEEEEEEecCCCcc
Confidence            35788898 778888 99999994 443321      11222222211   2379999999999999999997642 222


Q ss_pred             E---eEEEEEE-------cCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEc
Q psy16425         80 Q---VGYLEVV-------VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTK  149 (163)
Q Consensus        80 ~---~~~l~v~-------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~  149 (163)
                      .   ...+.+.       .+|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+.........+..|.|.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~  171 (201)
T 3s97_C           94 VFSKFIPLIPIPERTTKPYPADIVVQF--KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFN  171 (201)
T ss_dssp             EECCCEEEEEECCSSCCCEEEEEEEEC--CCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECS
T ss_pred             hhhcccceeeccccccCCCCCceEecC--CceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEcc
Confidence            1   2233332       123333322  256788999999999999999999999999986653322223567899999


Q ss_pred             chhhhHh
Q psy16425        150 KKKKKKK  156 (163)
Q Consensus       150 v~~~~~~  156 (163)
                      ++.+|.+
T Consensus       172 v~~~d~G  178 (201)
T 3s97_C          172 IQLEDEG  178 (201)
T ss_dssp             CCGGGCE
T ss_pred             CChhhCE
Confidence            9998875

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.75  E-value=5.3e-17  Score=105.65  Aligned_cols=126  Identities=21%  Similarity=0.262  Sum_probs=94.5

Q ss_pred             ceeEEEeeeeccCCCE-EEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          3 ARMLIEIGEMLMAEST-VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~-i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ..+.|.|...+.|.+. +.|++ ++..+.        .           .+.+|.|.+++.+|+|.|+|.+.+. ..+..
T Consensus        23 ~~v~L~C~~~~~p~~~~~~W~~-~~~~~~--------~-----------~~~~L~i~~~~~~d~G~Y~C~~~n~-~~s~~   81 (175)
T 1fnl_A           23 DSVTLKCQGAYSPEDNSTQWFH-NESLIS--------S-----------QASSYFIDAATVNDSGEYRCQTNLS-TLSDP   81 (175)
T ss_dssp             CCEEEEEECCCBTTBCCCEEEE-TTEEEE--------S-----------SCSEEEESSCCGGGCEEEEEECSSS-CCCCC
T ss_pred             CcEEEEeeCCCCCCCcceEEEE-CCEEcc--------C-----------CceEEEEeCCCcccCEEEEEEeeCC-ccccc
Confidence            3678899888887766 78999 554432        0           1228999999999999999999653 34556


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..++.....+   ...+.+|+.+.|.|.+.+.|++ .+.|++++..+..    ...+..|.|.+++.+|.+
T Consensus        82 ~~l~V~~~~~~~~~~---~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~----~~~~~~L~i~~v~~~d~G  150 (175)
T 1fnl_A           82 VQLEVHIGWLLLQAP---RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----FHHNSDFHIPKATLKDSG  150 (175)
T ss_dssp             EEEEEECSSEEEECS---CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----EEECCCEEESSCCGGGCE
T ss_pred             EEEEEeCCCceeeCC---CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC----CCCCCEEEEcccChhhCe
Confidence            677777555444332   3567899999999999887654 9999999988743    235578999999999875

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.75  E-value=7.5e-18  Score=110.63  Aligned_cols=129  Identities=14%  Similarity=0.131  Sum_probs=91.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC---Cce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP---MKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~---~~~   79 (163)
                      ..+.|.|...+ +.+.+.|++. +...               ...    ...|.|.+++.+|+|.|+|.+.+..   ..+
T Consensus        23 ~~v~L~C~~~~-~~~~~~W~k~-g~~~---------------~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s   81 (184)
T 2gi7_A           23 KPVTLRCQGPP-GVDLYRLEKL-SSSR---------------YQD----QAVLFIPAMKRSLAGRYRCSYQNGSLWSLPS   81 (184)
T ss_dssp             CCEEEEEECST-TCSEEEEEET-TTCC---------------EES----SSEEEESSCCGGGCEEEEEEEEETTEEBCCC
T ss_pred             CcEEEEEeCCC-CCCEEEEEEC-Cccc---------------cCc----ccEEEECcCChhhCceEEEEEEcCCCccCCC
Confidence            46888898876 7889999994 4331               011    1289999999999999999997753   223


Q ss_pred             EeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         80 QVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        80 ~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ..+.|.|..   +|.+...+   ...+.+|+++.|.|.+.+.| +.+.|++++..+.........++.|.|.+|+.+|.+
T Consensus        82 ~~~~l~V~~~~~~p~i~~~p---~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G  157 (184)
T 2gi7_A           82 DQLELVATGVFAKPSLSAQP---GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSG  157 (184)
T ss_dssp             CCEEEEEESSSCCCEEEEEC---CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCEEEEESSSEEEETTCCSE
T ss_pred             CCEEEEecCcCCCCEEEeCC---CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCCCceEEEEEccCCccCCe
Confidence            445666643   33343322   23467899999999987654 699999999876443333345678899999988875

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.74  E-value=3.4e-17  Score=115.32  Aligned_cols=131  Identities=18%  Similarity=0.369  Sum_probs=91.1

Q ss_pred             cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeEEEEEEc-----
Q psy16425         14 MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVV-----   88 (163)
Q Consensus        14 ~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~l~v~~-----   88 (163)
                      .|.+.+.|++ ++..+.        ...++.....+ ....|.|.+++.+|+|.|+|.+.+. .......+.+.+     
T Consensus       135 ~p~~~i~W~~-~~~~~~--------~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l~v~~~~~  203 (317)
T 2y25_A          135 VEDLKVNWSH-NGSAIR--------YSDRVKTGVTG-EQIWLQINEPTPNDKGKYVMELFDG-KTGHQKTVDLSGQAYDE  203 (317)
T ss_dssp             CSSCEEEEEE-SSSBCC--------CCSSEEEEECS-SEEEEEEESCCGGGCEEEEEEEECS-SCEEEEEEEECHHHHHH
T ss_pred             CCCcEEEEEE-CCEECC--------CCCCeEEeccC-CEEEEEECcCCcccCeeEEEEEEeC-CceEEEEEEEeeeeccc
Confidence            6899999999 555442        22344443332 3457999999999999999999764 223333344331     


Q ss_pred             -----------------CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEe-----ceEE
Q psy16425         89 -----------------PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDF-----PFFK  146 (163)
Q Consensus        89 -----------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~-----~~l~  146 (163)
                                       .|.+.... .....+.+|+.+.|.|.+.|+|.|.+.|++++..+..........     ..|.
T Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~  282 (317)
T 2y25_A          204 AYAEFQRLKQAAIAEKNRARVLGGL-PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFT  282 (317)
T ss_dssp             HHHHHHHHHHHHHHTTTSCEEEEBC-CSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEE
T ss_pred             cchhhcccCCcccCcCCCCcccccC-CccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEE
Confidence                             12222211 235678899999999999999999999999999886655444321     2899


Q ss_pred             EEcchhhhHh
Q psy16425        147 RTKKKKKKKK  156 (163)
Q Consensus       147 i~~v~~~~~~  156 (163)
                      |.+++.+|.+
T Consensus       283 i~~v~~~d~G  292 (317)
T 2y25_A          283 INGVSTADSG  292 (317)
T ss_dssp             EBSCCSTTCE
T ss_pred             ECCCCHHHCE
Confidence            9999999875

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.74  E-value=3.2e-17  Score=114.23  Aligned_cols=142  Identities=16%  Similarity=0.275  Sum_probs=100.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--eE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--SQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~~   80 (163)
                      ..+.|.|...+.|. .|.|++.++..+.        ...++.....+ ...+|.|.+++.+|+|.|+|.+.+....  ..
T Consensus        20 ~~v~l~C~~~~~p~-~v~W~~~~g~~~~--------~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~   89 (291)
T 2wim_A           20 ESKFFTCTAIGEPE-SIDWYNPQGEKII--------STQRVVVQKEG-VRSRLTIYNANIEDAGIYRCQATDAKGQTQEA   89 (291)
T ss_dssp             CCEEEEEEEESCCS-EEECBCTTCCBCC--------CBTTEEEEEET-TEEEEEECSCCGGGCEEEEEEEECSSSCEEEE
T ss_pred             CcEEEEEEEeCCCC-ceEEECCCCcCcc--------CCCcEEEecCC-CEEEEEEccCCcccCEEEEEEEecccCceEEE
Confidence            46788898888775 8999995554442        22444444333 3458999999999999999999766333  34


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce---EEeceEEEEcchhhhHh
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ---EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~---~~~~~l~i~~v~~~~~~  156 (163)
                      ...|.+..+|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+.......   ..++.|.|.+++.+|.+
T Consensus        90 ~~~l~v~~~~~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  166 (291)
T 2wim_A           90 TVVLEIYQKLTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEG  166 (291)
T ss_dssp             EEEEEEECCCBCCSCC--CSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCE
T ss_pred             EEEEEecCCcceEeCC--CChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCE
Confidence            5567777777665543  35678899999999999999999999999998765422222   14567999999988875

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.74  E-value=2.3e-17  Score=110.31  Aligned_cols=151  Identities=16%  Similarity=0.224  Sum_probs=97.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ceEE--eee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QTIL--TIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~~--~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      .++.|.|...+.|.+.|.|++.+. ....  ...  ........|+..... .++++|.|.+++.+|+|.|+|.+.+...
T Consensus        17 ~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   95 (213)
T 3d9a_L           17 NSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGS-GTDFTLSINSVETEDFGMYFCQQSNSWP   95 (213)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcC-CCEEEEEECCCChhhCEEEEEeeecCCc
Confidence            468899999888889999998532 2111  000  000112356666542 3466899999999999999999966532


Q ss_pred             c--eEeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEEec-C---Cc-------e
Q psy16425         78 K--SQVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELIAQ-G---NG-------Q  139 (163)
Q Consensus        78 ~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~~-~---~~-------~  139 (163)
                      .  .....|.|..   +|.+...+.  .....+|+.+.|.|.+.+ .|++ .+.|++++..+... .   ..       .
T Consensus        96 ~~~~~~~~l~V~~~~~~p~v~~~~~--~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~  173 (213)
T 3d9a_L           96 YTFGGGTKLEIKRADAAPTVSIFPP--SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTY  173 (213)
T ss_dssp             CEECCCEEEEECCCCBCCEEEEECC--CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCE
T ss_pred             ceeCCCEEEEEecCCCCceeEeECC--ChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCE
Confidence            2  2234566654   444443222  112336889999999987 6665 89999999886433 0   00       0


Q ss_pred             EEeceEEEEcchhhhHh
Q psy16425        140 EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 ~~~~~l~i~~v~~~~~~  156 (163)
                      .....|.|.++..+|.+
T Consensus       174 ~~~s~L~i~~~~~~d~G  190 (213)
T 3d9a_L          174 SMSSTLTLTKDEYERHN  190 (213)
T ss_dssp             EEEEEEEEEHHHHHHCC
T ss_pred             EEEEEEEEeccccCCCC
Confidence            12348999999988865

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.74  E-value=2e-16  Score=111.08  Aligned_cols=140  Identities=16%  Similarity=0.270  Sum_probs=98.7

Q ss_pred             eeEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          4 RMLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         4 ~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      .+.|.|... +.|.+.+.|++ ++..+.        ...++.+.... .+..+|.|.+++.+|+|.|+|.+.+. .....
T Consensus       124 ~v~l~C~~~~~~p~~~v~W~~-~~~~i~--------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~  193 (312)
T 2y23_A          124 QVRFWMQAEKLSGNAKVNYIF-NEKEIF--------EGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG-KATNH  193 (312)
T ss_dssp             CEEEEEEESCCCSSCEEEEEE-TTEEEC--------SSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESS-SCEEE
T ss_pred             CEEEEEEEEeCCCCCEEEEEE-CCEECe--------eCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeC-CceEE
Confidence            577888888 88999999999 555542        22444444332 34567999999999999999999543 33333


Q ss_pred             EEEEEEc---------------------CCcccccCCCCcEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCce
Q psy16425         82 GYLEVVV---------------------PPDILDYPTSTDMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQ  139 (163)
Q Consensus        82 ~~l~v~~---------------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~  139 (163)
                      ..+.+..                     +|.+...   ....+.+|+.+.|.|.+.+.|.| .+.|++++..+.......
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~  270 (312)
T 2y23_A          194 STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY---LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD  270 (312)
T ss_dssp             EEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE---EEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC-
T ss_pred             EEEEEcchhhhhhcccccccccchhhccCCceeec---ceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEE
Confidence            3344321                     1222211   13568899999999999999988 999999999987554444


Q ss_pred             E--EeceEEEEcchhhhHh
Q psy16425        140 E--DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 ~--~~~~l~i~~v~~~~~~  156 (163)
                      .  +...|.|.+++.+|.+
T Consensus       271 ~~~~~~~L~I~~v~~~d~G  289 (312)
T 2y23_A          271 FKDGICTLLITEFSKKDAG  289 (312)
T ss_dssp             ---CEEEEEECSCSGGGCE
T ss_pred             EECCEEEEEECcCCHHHCE
Confidence            3  3368999999999975

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.74  E-value=5.4e-18  Score=114.36  Aligned_cols=139  Identities=16%  Similarity=0.143  Sum_probs=92.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceE--EEEEcccCCCCCeEEEEEEEeCCC---
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAW--YLHIREVRESDRGWYMCQVNTDPM---   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~~~~~~~---   77 (163)
                      ..+.|.|...+ +.+.+.|+|. +..+....       .+..   ......  +|.|.+++.+|+|.|+|.+.+...   
T Consensus        24 ~~vtL~C~~~~-~~~~~~W~k~-g~~~~~~~-------~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~   91 (218)
T 1uct_A           24 GSVKIQCQAIR-EAYLTQLMII-KNSTYREI-------GRRL---KFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFR   91 (218)
T ss_dssp             CCEEEEECCCT-TCSEEEEEEE-ETTEEEEC-------SEEC---C----CCCEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred             CCEEEEEEcCC-CCCEEEEEEC-CCcccccc-------cccC---CCCcceeeEEEEcccccccCEEEEEEEEcCCCcee
Confidence            46888998876 6889999994 44432110       1100   001123  799999999999999999977532   


Q ss_pred             ceEeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhh
Q psy16425         78 KSQVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKK  154 (163)
Q Consensus        78 ~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~  154 (163)
                      .+....|.|..   +|.+...+   ...+.+|+++.|.|.+.+.|.+.+.|+++|..+.........++.|.|.+|+.+|
T Consensus        92 ~s~~~~l~V~~~~~~P~i~~~p---~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D  168 (218)
T 1uct_A           92 YSDTLELVVTGLYGKPFLSADR---GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNV  168 (218)
T ss_dssp             ECCCEEEEEECSSCCCEEEESS---CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGG
T ss_pred             ecCCEEEEEcCcccCCEEEeCC---CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEccCCccc
Confidence            22345666654   33343322   3467899999999977777888999999987653311111245679999999998


Q ss_pred             Hh
Q psy16425        155 KK  156 (163)
Q Consensus       155 ~~  156 (163)
                      ++
T Consensus       169 ~G  170 (218)
T 1uct_A          169 SG  170 (218)
T ss_dssp             CE
T ss_pred             CE
Confidence            76

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.74  E-value=4.7e-17  Score=113.30  Aligned_cols=140  Identities=16%  Similarity=0.162  Sum_probs=101.5

Q ss_pred             ceeEEEeeeeccCCCE-EEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC--Cce
Q psy16425          3 ARMLIEIGEMLMAEST-VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP--MKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~-i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~--~~~   79 (163)
                      ..+.|.|...+.+.+. +.|++.++..+        ....++.....+    .|.|.+++.+|+|.|+|.+.+..  ..+
T Consensus       105 ~~v~L~C~~~~~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~----~L~i~~v~~~d~G~Y~C~a~~~~~~~~~  172 (289)
T 3ejj_X          105 QEAVLPCLITDPALKDSVSLMREGGRQV--------LRKTVYFFSPWR----GFIIRKAKVLDSNTYVCKTMVNGRESTS  172 (289)
T ss_dssp             SCEEECEEESCGGGGGSEEEEEGGGEEC--------CTTCCEEEETTT----EEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CceEeEEEccCCCcceEEEEEecCCeec--------CCCccEEECCCC----CEEEeecccccCEEEEEEEEeCCCcccc
Confidence            3578888887777665 99998555443        234455555444    79999999999999999997442  334


Q ss_pred             EeEEEEEE----cCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCCeEEEEECCeEEEec------CCceEEeceEEEE
Q psy16425         80 QVGYLEVV----VPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKPNITWRREGGELIAQ------GNGQEDFPFFKRT  148 (163)
Q Consensus        80 ~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~------~~~~~~~~~l~i~  148 (163)
                      ..+.|.|.    .+|.+...+  ....+.+|+++.|.|.+.+ .|.|.+.|++++..+...      .......+.|.|.
T Consensus       173 ~~~~l~V~~~~~~~p~i~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  250 (289)
T 3ejj_X          173 TGIWLKVNRVHPEPPQIKLEP--SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLN  250 (289)
T ss_dssp             CCEEEEEESSCCCCCEEEEES--SSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEES
T ss_pred             ccEEEEEEECCCCCCeEEecC--CceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEE
Confidence            45667776    455555544  2455678999999999998 799999999999876432      2222356789999


Q ss_pred             cchhhhHh
Q psy16425        149 KKKKKKKK  156 (163)
Q Consensus       149 ~v~~~~~~  156 (163)
                      +++.+|.+
T Consensus       251 ~v~~~d~G  258 (289)
T 3ejj_X          251 AVDFQDAG  258 (289)
T ss_dssp             SCCSSSCE
T ss_pred             eecccCCE
Confidence            99998865

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.74  E-value=1.8e-17  Score=110.46  Aligned_cols=148  Identities=18%  Similarity=0.272  Sum_probs=98.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCC-ceEEEEEcccCCCCCeEEEEEEEeCCCc--e
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSET-KAWYLHIREVRESDRGWYMCQVNTDPMK--S   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~   79 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.....   ....+......+. ....|.|.+++.+|+|.|+|.+.+....  +
T Consensus        25 ~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~  100 (212)
T 2v9r_A           25 EPATLNCKAEGRPTPTIEWYK-GGERVETDKD---DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS  100 (212)
T ss_dssp             CCEEECCEEEEESCCEEEEEE-TTEECCCTTT---CTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEEC
T ss_pred             CcEEEEEEcCCCCCCEEEEEE-CCEEeecccc---ccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceee
Confidence            467888998889999999999 4544321100   0000111111110 0113456778999999999999765322  3


Q ss_pred             EeEEEEEEcCCc-ccccCCCCcEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEecCC-ceEEeceEEEEcchhhhHh
Q psy16425         80 QVGYLEVVVPPD-ILDYPTSTDMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQGN-GQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        80 ~~~~l~v~~~p~-~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~-~~~~~~~l~i~~v~~~~~~  156 (163)
                      ....|.|...|. +...+  ....+.+|+.+.|.|.+ .+.|.|.+.|++++..+..... ....++.|.|.+++.+|.+
T Consensus       101 ~~~~l~V~~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G  178 (212)
T 2v9r_A          101 HDASLEVAILRDDFRQNP--SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAG  178 (212)
T ss_dssp             CCEEEEECEECSSCSBCC--CCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCE
T ss_pred             cceEEEEEeccccceeCC--CceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCe
Confidence            345666665333 33222  35678899999999998 8899999999999998765432 2346678999999998875

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.74  E-value=1.1e-16  Score=112.87  Aligned_cols=141  Identities=18%  Similarity=0.237  Sum_probs=97.1

Q ss_pred             ceeEEEeee------eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE-eC
Q psy16425          3 ARMLIEIGE------MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN-TD   75 (163)
Q Consensus         3 ~~~~~~~~~------~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~-~~   75 (163)
                      .++.|.|..      .+.|.+.|.|++ ++..+..       ...++... .+    .|.|.+++.+|+|.|+|.+. +.
T Consensus       119 ~~v~l~C~~~~~~~~~g~p~~~i~W~k-~~~~l~~-------~~~~~~~~-~~----~L~i~~v~~~d~G~Y~C~a~~n~  185 (315)
T 1itb_B          119 GDGGLVCPYMEFFKNENNELPKLQWYK-DCKPLLL-------DNIHFSGV-KD----RLIVMNVAEKHRGNYTCHASYTY  185 (315)
T ss_dssp             SCEEEECSSCTTTCTTTTCCCCCEEEE-TTEECCC-------CSSSEEEE-TT----EEEESSCCGGGCEEEEEEEEEEE
T ss_pred             CCeEEEEecccccccCCCCCCEEEEEE-CCEECCC-------ccceEeec-Cc----eEEEEeceehhCcEEEEEEEcCC
Confidence            357788876      788999999999 5554421       12233222 22    89999999999999999997 44


Q ss_pred             CCce----EeEEEEEE-----cCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-------
Q psy16425         76 PMKS----QVGYLEVV-----VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-------  139 (163)
Q Consensus        76 ~~~~----~~~~l~v~-----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-------  139 (163)
                      ....    ....+.+.     .+|.+...+ .....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......       
T Consensus       186 ~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~  264 (315)
T 1itb_B          186 LGKQYPITRVIEFITLEENKPTRPVIVSPA-NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSV  264 (315)
T ss_dssp             TTEEEEEEEEEEEEEECCCCCCCCEECSCC-SEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEE
T ss_pred             CCcEEEEEEEEEEEEecCCCCCCCEEecCC-CCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceee
Confidence            3222    22233333     345444322 223568899999999999999999999999998876543221       


Q ss_pred             ---------EEeceEEEEcchhhh-Hhh
Q psy16425        140 ---------EDFPFFKRTKKKKKK-KKK  157 (163)
Q Consensus       140 ---------~~~~~l~i~~v~~~~-~~~  157 (163)
                               .....|.|.+++.+| ++.
T Consensus       265 ~~~~~~~~~~~~~~L~i~~v~~~d~~G~  292 (315)
T 1itb_B          265 ENPANKRRSTLITVLNISEIESRFYKHP  292 (315)
T ss_dssp             CCSSCGGGEEEEEEEEESSCCGGGGTSC
T ss_pred             eccCCCceeEEEEEEEEeecCHHHcCCc
Confidence                     123489999999998 653

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.74  E-value=5.6e-17  Score=108.72  Aligned_cols=129  Identities=17%  Similarity=0.308  Sum_probs=85.3

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcC-Cc-e--EEeee-----eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVD-TQ-T--ILTIQ-----THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~-~~-~--~~~~~-----~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .++.|.|...+. +.+.|.||+.+ +. .  +....     .......+|+.+.. ..++++|.|.+++.+|+|.|.|.+
T Consensus        16 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~   94 (218)
T 3s96_B           16 ASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-SGADRYLSISNIQPEDEAIYICGV   94 (218)
T ss_dssp             SCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-CCceEEEEEccCCcccCEEEEEEE
Confidence            478999999888 89999999943 11 1  11110     00011235777665 345678999999999999999999


Q ss_pred             EeCCC------ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEEe
Q psy16425         73 NTDPM------KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELIA  134 (163)
Q Consensus        73 ~~~~~------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~  134 (163)
                      .+...      ......|.|..    +|.+...+.  ......|+.+.|.|.+.+ .|.| .+.|++++..+..
T Consensus        95 ~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~--~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  166 (218)
T 3s96_B           95 GDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPP--SSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQ  166 (218)
T ss_dssp             EEEETTEEEEEECCCEEEEEESCCCBCCEEEEECC--CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--
T ss_pred             ecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCC--CcccccCCcEEEEEEECcccCCCeEEEEEECCEECcC
Confidence            66532      23345677773    344433221  222345789999999987 6777 8999999988754

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.73  E-value=4.6e-17  Score=107.21  Aligned_cols=138  Identities=13%  Similarity=0.072  Sum_probs=92.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC---Cce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP---MKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~---~~~   79 (163)
                      .++.|.|...+ +.+.+.|+| ++..+...      ....    .....+..|.|.+++.+|+|.|+|.+.+..   ..+
T Consensus        19 ~~v~L~C~~~~-~~~~~~w~k-~g~~~~~~------~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s   86 (188)
T 1oll_A           19 KQVTICCQGNY-GAVEYQLHF-EGSLFAVD------RPKP----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPS   86 (188)
T ss_dssp             CCEEEEEECCT-TCCEEEEEE-TTEEEEEE------CCSS----CTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCC
T ss_pred             CCEEEEEecCC-CCCEEEEEE-CCCccccc------cccc----CCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCC
Confidence            46888898765 457899999 55544211      0000    011234589999999999999999996642   224


Q ss_pred             EeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         80 QVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        80 ~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ..+.|.|..   +|.+...+   ...+.+|+++.|.|.+.+ +.+.+.|++++..+.........++.|.|.+|+.+|++
T Consensus        87 ~~~~l~V~~~~~~p~i~~~p---~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G  162 (188)
T 1oll_A           87 NLLDLVVTEMYDTPTLSVHP---GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRG  162 (188)
T ss_dssp             CCEEEEEESCSCCCEEEEES---CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCE
T ss_pred             CceEEEecccCCCCeEEECC---CCccccCCEEEEEEEcCC-CCCEEEEEECCccccccccCCCceeEEEECCCCcCCCc
Confidence            455676664   34444322   345789999999999876 45789999998765432111124578999999999976

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.73  E-value=2.2e-17  Score=109.25  Aligned_cols=138  Identities=14%  Similarity=0.092  Sum_probs=93.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC---ce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM---KS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~---~~   79 (163)
                      ..+.|.|...+ +.+.+.|+| ++..+....          ...........|.|.+++.+|+|.|+|.+.+...   .+
T Consensus        20 ~~v~L~C~~~~-~~~~~~w~k-~g~~~~~~~----------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s   87 (196)
T 3p2t_A           20 NSVTIWCQGTL-EAREYRLDK-EESPAPWDR----------QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPS   87 (196)
T ss_dssp             CCEEEEEECCT-TCCEEEEEE-TTSCSCSEE----------ECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCC
T ss_pred             CcEEEEeeCCC-CCCEEEEEE-CCCCCcccc----------cccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCC
Confidence            46888898887 778999999 444331110          0000112234899999999999999999977632   24


Q ss_pred             EeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc-----eEEeceEEEEcch
Q psy16425         80 QVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG-----QEDFPFFKRTKKK  151 (163)
Q Consensus        80 ~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~v~  151 (163)
                      ..+.|.|..   +|.+...+   ...+.+|+.+.|.|.+.+ +++.+.|++++..+......     ....+.|.|.+|+
T Consensus        88 ~~~~l~V~~~~~~p~~~~~~---~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~  163 (196)
T 3p2t_A           88 DPLELVMTGAYSKPTLSALP---SPLVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVT  163 (196)
T ss_dssp             CCEEEEEECSSCCCEEEEES---CSEECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCC
T ss_pred             ccEEEEecCCCCCCEEEeCC---cceecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceEEEeCCCc
Confidence            455666654   23333322   236789999999999987 45689999998765322111     1255789999999


Q ss_pred             hhhHh
Q psy16425        152 KKKKK  156 (163)
Q Consensus       152 ~~~~~  156 (163)
                      .+|++
T Consensus       164 ~~d~G  168 (196)
T 3p2t_A          164 SVHGG  168 (196)
T ss_dssp             GGGCE
T ss_pred             ccCCC
Confidence            99976

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.73  E-value=3.6e-16  Score=106.18  Aligned_cols=151  Identities=14%  Similarity=0.174  Sum_probs=97.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEEee---e-e---eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTILTI---Q-T---HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~~~---~-~---~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|. .+.|.+.|.|++.+ +......   . .   .......|+.+.......++|.|.+++.+|+|.|.|.+.+
T Consensus        16 ~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   94 (238)
T 2p1y_A           16 GKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGD   94 (238)
T ss_dssp             CCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC
T ss_pred             CEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCeeEEEEEEe
Confidence            46788888 77889999999952 2111110   0 0   0011245677665444567899999999999999999965


Q ss_pred             CCC------ceEeEEEEEEcCCc------------ccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCe-----E
Q psy16425         75 DPM------KSQVGYLEVVVPPD------------ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGG-----E  131 (163)
Q Consensus        75 ~~~------~~~~~~l~v~~~p~------------~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~-----~  131 (163)
                      ...      ......|.|...+.            +...+  ....+.+|+++.|.|.+.+.|.|.+.|++++.     .
T Consensus        95 ~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p--~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~  172 (238)
T 2p1y_A           95 LGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSP--QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPAL  172 (238)
T ss_dssp             ------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEEC--SEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEE
T ss_pred             CCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccC--ceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEE
Confidence            421      11334677765543            22222  35678899999999999999999999998641     1


Q ss_pred             EE---------ecCCceEE------eceEEEEcchhhhHh
Q psy16425        132 LI---------AQGNGQED------FPFFKRTKKKKKKKK  156 (163)
Q Consensus       132 ~~---------~~~~~~~~------~~~l~i~~v~~~~~~  156 (163)
                      +.         ...+....      ...|+|.+++.+|++
T Consensus       173 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G  212 (238)
T 2p1y_A          173 LISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA  212 (238)
T ss_dssp             EEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCE
T ss_pred             EEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCE
Confidence            11         11222111      257999999999875

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.73  E-value=1.9e-17  Score=110.89  Aligned_cols=146  Identities=21%  Similarity=0.348  Sum_probs=97.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--eE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--SQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~~   80 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+....    ....++.. ..+.....|.|.+++.+|+|.|+|.+.+....  +.
T Consensus        25 ~~v~L~C~~~g~p~~~v~W~~-~g~~~~~~~----~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~   98 (217)
T 2vr9_A           25 EPATLNCKVEGKPEPTIEWFK-DGEPVSTNE----KKSHRVQF-KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSR   98 (217)
T ss_dssp             SCEEECCEEECSSCCEEEEEE-TTEECCCSS----SSSSEEEC-TTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECC
T ss_pred             CcEEEEEEcCCCCCCeEEEEE-CCcCccCCC----ccceeEEe-cCCceEEEEEeccCCcccCceEEEEEecCCCccccc
Confidence            367888998888999999999 555442110    00112211 11111123368999999999999999765332  23


Q ss_pred             eEEEEEEc-CCcccccCCCCcEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEecC--------Cce-EEeceEEEEc
Q psy16425         81 VGYLEVVV-PPDILDYPTSTDMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQG--------NGQ-EDFPFFKRTK  149 (163)
Q Consensus        81 ~~~l~v~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~--------~~~-~~~~~l~i~~  149 (163)
                      ...+.+.+ +|.+...+  ....+.+|+.+.|.|.+ .+.|.|.+.|++++..+....        ... ..++.|.|.+
T Consensus        99 ~~~l~v~~~~~~~~~~~--~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  176 (217)
T 2vr9_A           99 HASLQIAVLRDDFRVEP--KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISN  176 (217)
T ss_dssp             CEEEEECEECCSCSBCC--CCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESS
T ss_pred             cceEEEEEeCCCcEECC--CccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEee
Confidence            45666655 34444333  35678899999999999 899999999999998876321        111 2446899999


Q ss_pred             chhhhHh
Q psy16425        150 KKKKKKK  156 (163)
Q Consensus       150 v~~~~~~  156 (163)
                      ++.+|.+
T Consensus       177 ~~~~d~G  183 (217)
T 2vr9_A          177 VEPIDEG  183 (217)
T ss_dssp             CCSTTCE
T ss_pred             CCHHHCe
Confidence            9998875

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.73  E-value=5.7e-17  Score=108.28  Aligned_cols=149  Identities=15%  Similarity=0.227  Sum_probs=95.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEE-ee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTIL-TI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~-~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      .++.|.|...  +.+.|.||+.+ +.... ..   ........+|+.... ..++++|.|.+++.+|+|.|+|.+.+...
T Consensus        16 ~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   92 (211)
T 3tv3_L           16 QSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-SGNTASLTVSGLQTDDEAVYYCGSLVGNW   92 (211)
T ss_dssp             CEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEEESCCGGGCEEEEEEEEETTT
T ss_pred             CCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-cCCEEEEEECCCChhHCEEEEEEEecCCC
Confidence            4688888887  88999999942 21111 00   000011335666554 33567899999999999999999977643


Q ss_pred             ---ceEeEEEEEE----cCCcccccCCCCcEEEeCCCcEEEEeEeccC--CCCeEEEEECCeEEEec----------CCc
Q psy16425         78 ---KSQVGYLEVV----VPPDILDYPTSTDMVIREGSNVTLKCAASGS--PKPNITWRREGGELIAQ----------GNG  138 (163)
Q Consensus        78 ---~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~--p~p~v~W~~~~~~~~~~----------~~~  138 (163)
                         ......|.|.    .+|.+...+.  ...+.+|+.+.|.|.+.+.  |.+.+.|++++..+...          ...
T Consensus        93 ~~~~~~~~~l~V~~~~~~~P~v~~~~~--~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~  170 (211)
T 3tv3_L           93 DVIFGGGTKLTVLGQPKAAPSVTLFPP--SSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNK  170 (211)
T ss_dssp             EEEECCCEEEEECCSCCBCCEEEEECC--CHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSS
T ss_pred             ceeECCCceEEEeCCCCcCCeeEecCC--chhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCC
Confidence               3344567776    4555544332  1223369999999999885  35789999999887421          011


Q ss_pred             eEEeceEEEEcchhhhHh
Q psy16425        139 QEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       139 ~~~~~~l~i~~v~~~~~~  156 (163)
                      ......|.|..+..+|.+
T Consensus       171 ~~~~s~L~i~~~~~~d~g  188 (211)
T 3tv3_L          171 YAASSYLSLTPEQWKSHR  188 (211)
T ss_dssp             EEEEEEEEECHHHHHHSS
T ss_pred             EEEEEEEEEcHHHhCCCC
Confidence            112356788888777654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.73  E-value=4.5e-17  Score=108.78  Aligned_cols=151  Identities=17%  Similarity=0.221  Sum_probs=96.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceE--Eeee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTI--LTIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~--~~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      .++.|.|...+.|.+.|.||+.+ +..+  ....  ........|+.... ..++++|.|.+++.+|+|.|.|.+.+...
T Consensus        16 ~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   94 (210)
T 1lk3_L           16 EKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG-SGTDFTLTIDPVEADDTAIYFCQQSWNGP   94 (210)
T ss_dssp             SCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe-cCCEEEEEECCCCHHHCeEEEEEEEcCCC
Confidence            46889999988888999999953 2211  1100  00001235666554 23466899999999999999999966532


Q ss_pred             c--eEeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEEec----CCc-------e
Q psy16425         78 K--SQVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELIAQ----GNG-------Q  139 (163)
Q Consensus        78 ~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~~----~~~-------~  139 (163)
                      .  .....|.|..   +|.+...+..  ....+|+.+.|.|.+.| .|++ .+.|++++..+...    ...       .
T Consensus        95 ~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~  172 (210)
T 1lk3_L           95 LTFGAGTKLELKRADAAPTVSIFPPS--TEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTY  172 (210)
T ss_dssp             CEECCCEEEEECCCCBCCEEEEECCC--HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCE
T ss_pred             ceeCCCEEEEEcCCCcCCeEEEECCc--hhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCE
Confidence            2  2234566654   3444432221  12347899999999987 5554 89999999876433    000       0


Q ss_pred             EEeceEEEEcchhhhHh
Q psy16425        140 EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 ~~~~~l~i~~v~~~~~~  156 (163)
                      .....|.|.++..+|++
T Consensus       173 ~~~s~L~i~~~~~~d~G  189 (210)
T 1lk3_L          173 SMSSTLSLTKADYESHN  189 (210)
T ss_dssp             EEEEEEEEEHHHHHTCC
T ss_pred             EEEEEEEEChHHhccCC
Confidence            12236899999888765

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.72  E-value=2.9e-16  Score=117.91  Aligned_cols=148  Identities=20%  Similarity=0.241  Sum_probs=105.2

Q ss_pred             ceeEEEeeeeccCCCE-EEEEEcCCce-EEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCce
Q psy16425          3 ARMLIEIGEMLMAEST-VAWLRVDTQT-ILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~-i~W~k~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~   79 (163)
                      ..+.|.|...+.|.+. |.|++.+... +.......+.......      ....|.|.+++.+|+|.|+|.+.+. +...
T Consensus       227 ~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~  300 (524)
T 2ec8_A          227 EEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE------RQATLTISSARVNDSGVFMCYANNTFGSAN  300 (524)
T ss_dssp             SCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEE------EEEEEEESSCCTTTCEEEEEEEECSSCEEE
T ss_pred             CcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccc------eEEEEEECCCCHHHCEEEEEEEEecCCceE
Confidence            3678889988888887 9999954331 2111111111111111      2348999999999999999999765 4445


Q ss_pred             EeEEEEEEcCCcccccCC-CCcEEEeCCCcEEEEeEeccCCCCe-EEEEECCeEEEecCCce---------EEeceEEEE
Q psy16425         80 QVGYLEVVVPPDILDYPT-STDMVIREGSNVTLKCAASGSPKPN-ITWRREGGELIAQGNGQ---------EDFPFFKRT  148 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~~~~~~~---------~~~~~l~i~  148 (163)
                      ..+.|.|..+|.+...+. .....+.+|+++.|.|.+.|+|.|. +.|++++..+.......         .....|.|.
T Consensus       301 ~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~  380 (524)
T 2ec8_A          301 VTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLT  380 (524)
T ss_dssp             EEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEEC
T ss_pred             EEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEe
Confidence            567788888887765442 2357789999999999999999999 99999998765443111         134689999


Q ss_pred             cchhhhHh
Q psy16425        149 KKKKKKKK  156 (163)
Q Consensus       149 ~v~~~~~~  156 (163)
                      +++.+|.+
T Consensus       381 ~v~~~d~G  388 (524)
T 2ec8_A          381 RLKGTEGG  388 (524)
T ss_dssp             SCCGGGCE
T ss_pred             ecCcccCe
Confidence            99999876

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.72  E-value=1.4e-16  Score=109.85  Aligned_cols=152  Identities=12%  Similarity=0.131  Sum_probs=100.4

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceEE---eee------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTIL---TIQ------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~~---~~~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.+  .+.|.|++.+ +..+.   ...      .......+|+.+.... .++++|.|.+++++|+|.|.
T Consensus        16 ~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   95 (256)
T 1nqb_A           16 ASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYY   95 (256)
T ss_dssp             CCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChhhCEEEE
Confidence            4688889887664  6899999953 22221   100      0001234677776543 45679999999999999999


Q ss_pred             EEEEeCCC------ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCC-----eEEEEE--CCeEEEe--
Q psy16425         70 CQVNTDPM------KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKP-----NITWRR--EGGELIA--  134 (163)
Q Consensus        70 C~~~~~~~------~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-----~v~W~~--~~~~~~~--  134 (163)
                      |.+.+...      ......|.|...|.+...+  ....+.+|+++.|.|.+.+.|.+     .+.|++  ++..+..  
T Consensus        96 C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~  173 (256)
T 1nqb_A           96 CARYDYYGSSYFDYWGQGTTVTVSSDIELTQTP--LSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLI  173 (256)
T ss_dssp             EEECCTTSSSSCSEECCCEEEEECCCCCEEEEC--SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEE
T ss_pred             EEEeeccCccceeEEcCceeeeecccccEEecC--cEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEE
Confidence            99976521      1123566776666554433  35678899999999999998765     899999  5554321  


Q ss_pred             ----------cCCceE----EeceEEEEcchhhhHh
Q psy16425        135 ----------QGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       135 ----------~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                                ..+...    ....|+|.+++.+|.+
T Consensus       174 ~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  209 (256)
T 1nqb_A          174 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG  209 (256)
T ss_dssp             ETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCE
Confidence                      111111    2246999999999875

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.72  E-value=1.1e-16  Score=111.68  Aligned_cols=139  Identities=13%  Similarity=0.154  Sum_probs=99.8

Q ss_pred             ceeEEEeeeeccCC-CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCe-EEEEEEEeCCCc--
Q psy16425          3 ARMLIEIGEMLMAE-STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRG-WYMCQVNTDPMK--   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~~~~~~--   78 (163)
                      ..+.|.|...+ |. +.|.|++.++..+        ....++.....+    .|.|.+++.+|+| .|+|.+.+....  
T Consensus       107 ~~v~l~C~~~~-p~~~~v~W~~~~g~~l--------~~~~~~~~~~~~----~L~i~~v~~~d~G~~Y~C~a~n~~~~~~  173 (290)
T 2o26_X          107 SDALVRCPLTD-PQVSQYSLIECDGKSL--------PTDLTFVPNPKA----GITIKNVKRAYHRLCVRCAAQRDGTWLH  173 (290)
T ss_dssp             SCEEECCCBSC-CSCEEEEEEETTSCCC--------CTTCEEEEETTT----EEEEESCCGGGTTCEEEEEEEETTEEEE
T ss_pred             CeEEEeCcCCC-CCCceEEEEeCCCcCC--------CCCCceeeCCCC----CEEEecccHHHCCCEEEEEEEECCceEE
Confidence            35778888775 77 9999976566554        223444444443    7999999999999 999999876433  


Q ss_pred             eEeEEEEEE----cCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCe-EEEEECCeEE----EecCC-------ceEEe
Q psy16425         79 SQVGYLEVV----VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPN-ITWRREGGEL----IAQGN-------GQEDF  142 (163)
Q Consensus        79 ~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~----~~~~~-------~~~~~  142 (163)
                      +..+.|.|.    .+|.+...+.  ...+.+|+.+.|.|.+.+.|.|. +.|++++..+    .....       .....
T Consensus       174 s~~~~l~V~~~~~~~P~i~~~~~--~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (290)
T 2o26_X          174 SDKFTLKVREAIKAIPVVSVPET--SHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQ  251 (290)
T ss_dssp             CCCEEEEEECCCCSCCEEECSCS--BCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEE
T ss_pred             eEEEEEEEEeCCCCCCccccCCC--cceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEE
Confidence            234567766    5566554332  34688999999999999999996 9999998773    11111       12345


Q ss_pred             ceEEEEcchhhhHh
Q psy16425        143 PFFKRTKKKKKKKK  156 (163)
Q Consensus       143 ~~l~i~~v~~~~~~  156 (163)
                      +.|.|.+++.+|.+
T Consensus       252 ~~L~I~~v~~~d~G  265 (290)
T 2o26_X          252 ETLTISSARVDDSG  265 (290)
T ss_dssp             EEEEESSCCSSSCE
T ss_pred             EEEEEcCCCcccCe
Confidence            78999999998875

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.72  E-value=1.3e-16  Score=105.54  Aligned_cols=137  Identities=14%  Similarity=0.257  Sum_probs=85.3

Q ss_pred             ceeEEEeeeec-cCCCEEEEEEcCCceEEeeee-e---------EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425          3 ARMLIEIGEML-MAESTVAWLRVDTQTILTIQT-H---------VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~-~---------~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .++.|.|...+ .+.+.|.|++. +..+..... .         .....+|+.+..    +++|.|.+++.+|+|.|.|.
T Consensus        14 ~~v~L~C~~~~~~~~~~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~   88 (193)
T 2if7_A           14 ESVTLPLEFPAGEKVNFITWLFN-ETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ----SYSLQLSNLKMEDTGSYRAQ   88 (193)
T ss_dssp             SCEEECCCCCCCSCCCEEEEEET-TEEEEEEECCSSSCCEEEECCHHHHTTEEECT----TCCEEECSCCGGGCEEEEEE
T ss_pred             CeEEEeccCCCcccccEEEEEEC-CEEEEEEecccCCCCceeecCccccccEEECC----CeEEEECCCCcccCceEEEE
Confidence            46888888765 45579999994 443322111 0         001124666653    34899999999999999999


Q ss_pred             EEeCCC-ceEeEEEEEEcCCcccccCCCCcEEEeCCC-cEEEEeEeccC-CCCeEEEEECCeEEEecCCceEEeceEEEE
Q psy16425         72 VNTDPM-KSQVGYLEVVVPPDILDYPTSTDMVIREGS-NVTLKCAASGS-PKPNITWRREGGELIAQGNGQEDFPFFKRT  148 (163)
Q Consensus        72 ~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~  148 (163)
                      +.+... ....+.|.|..++........ ......|. .+.|.|.+.+. |.|.+.|++++..+..       +..|+|.
T Consensus        89 ~~~~~~~~~~~~~L~V~~~~~~p~i~~~-~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~-------~~~l~i~  160 (193)
T 2if7_A           89 ISTKTSAKLSSYTLRILRQLRNIQVTNH-SQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS-------QPNLTVS  160 (193)
T ss_dssp             EECSSCEEEEEEEEEEECCCEEEEEEEC-CC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES-------SSEEEEE
T ss_pred             EEecCCCeEEEEEEEEEccCCCCeEecC-ceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC-------CCeEEEE
Confidence            976532 334566777665432221111 11233455 79999999985 5889999999876532       2346665


Q ss_pred             cchh
Q psy16425        149 KKKK  152 (163)
Q Consensus       149 ~v~~  152 (163)
                      ...+
T Consensus       161 ~~~~  164 (193)
T 2if7_A          161 WDPR  164 (193)
T ss_dssp             ECTT
T ss_pred             eccC
Confidence            4444

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=4.1e-16  Score=106.52  Aligned_cols=152  Identities=15%  Similarity=0.249  Sum_probs=98.5

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcCC-ceEEee---e------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVDT-QTILTI---Q------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~~-~~~~~~---~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.|  .+.|.|++.+. ......   .      .......+|+.+.... .+.++|.|.+++.+|+|.|.
T Consensus        18 ~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   97 (247)
T 2ghw_B           18 KSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYY   97 (247)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHHHCEEEE
Confidence            4688899988776  68899999532 111100   0      0001234677776543 45679999999999999999


Q ss_pred             EEEEeCC-C--ceEeEEEEEEcCC---------------cccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEE--CC
Q psy16425         70 CQVNTDP-M--KSQVGYLEVVVPP---------------DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR--EG  129 (163)
Q Consensus        70 C~~~~~~-~--~~~~~~l~v~~~p---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~--~~  129 (163)
                      |.+.+.. .  ......|.|...+               .+...+  ....+.+|+++.|.|.+.+.|.|.+.|++  ++
T Consensus        98 C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g  175 (247)
T 2ghw_B           98 CARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSP--ATLSLSPGERATLSCRASQSVRSNLAWYQQKPG  175 (247)
T ss_dssp             EEEEETTEEEEECCCEEEEECSCC------------CCCCEEEEC--SEEEECTTSCEEEEEEESSCCTTCEEEEEECTT
T ss_pred             EeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccC--CEEEecCCCcEEEEEEeCCCccceEEEEEECCC
Confidence            9997651 1  1223466666542               122212  35568899999999999999999999998  45


Q ss_pred             eEEEe------------cCCce----EEeceEEEEcchhhhHh
Q psy16425        130 GELIA------------QGNGQ----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       130 ~~~~~------------~~~~~----~~~~~l~i~~v~~~~~~  156 (163)
                      ..+..            ..+..    .....|+|.+++.+|.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  218 (247)
T 2ghw_B          176 QAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFA  218 (247)
T ss_dssp             SCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCE
T ss_pred             CCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCE
Confidence            43311            01111    12346999999999875

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.72  E-value=5.6e-17  Score=105.59  Aligned_cols=126  Identities=18%  Similarity=0.203  Sum_probs=91.1

Q ss_pred             ceeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          3 ARMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ..+.|.|...+.+.+ .+.|++ ++..+.        .           .+.+|.|.+++.+|+|.|+|.+.+ ...+..
T Consensus        20 ~~v~L~C~~~~~~~~~~i~W~~-~~~~~~--------~-----------~~~~L~i~~v~~~d~G~Y~C~~~~-~~~s~~   78 (176)
T 1f2q_A           20 ENVTLTCNGNNFFEVSSTKWFH-NGSLSE--------E-----------TNSSLNIVNAKFEDSGEYKCQHQQ-VNESEP   78 (176)
T ss_dssp             CCEEEECCTTCC----CCEEEE-TTEECS--------C-----------CSSEEEECSCCGGGCEEEEEECTT-SSCCCC
T ss_pred             CcEEEEEeCCCCCCcceEEEEE-CCeECC--------C-----------CceEEEEeccceecCEEEEEEcCC-cccccc
Confidence            367889988888775 699999 554331        0           123899999999999999999954 334556


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..++.....+   ...+.+|+.+.|.|.+. +.|.+.+.|++++..+..    ...++.|.|.+++.+|.+
T Consensus        79 ~~l~V~~~~~~~~~~---~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~----~~~~~~L~i~~v~~~d~G  147 (176)
T 1f2q_A           79 VYLEVFSDWLLLQAS---AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY----WYENHNISITNATVEDSG  147 (176)
T ss_dssp             EEEEEECSSEEEEES---CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS----CCCSSEEEESSCCGGGCE
T ss_pred             EEEEEeCcceeecCC---cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEee----ecCCCeEEECCCCcccCE
Confidence            677777554444332   34677999999999995 677789999999987732    234567999999998875

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.72  E-value=2.2e-16  Score=105.13  Aligned_cols=154  Identities=21%  Similarity=0.234  Sum_probs=98.7

Q ss_pred             cceeEEEeeeeccCCC---EEEEEEcCCceEEee-----e--eeE--EecCCeEEEEeCC--CceEEEEEcccCCCCCeE
Q psy16425          2 AARMLIEIGEMLMAES---TVAWLRVDTQTILTI-----Q--THV--ITKNHRIGVTHSE--TKAWYLHIREVRESDRGW   67 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~---~i~W~k~~~~~~~~~-----~--~~~--~~~~~r~~~~~~~--~~~~~L~i~~v~~~d~G~   67 (163)
                      ..++.|.|...+.|.+   .|.|+|.+.......     .  ...  ....+|+.+....  ..+++|.|.+++.+|+|.
T Consensus        14 G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~   93 (218)
T 4frw_A           14 GQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGE   93 (218)
T ss_dssp             TSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCGGGCEE
T ss_pred             CCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccHHHCCc
Confidence            3468889988777765   489999543221100     0  000  0123444443332  245689999999999999


Q ss_pred             EEEEEEeCCCce--EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-----E
Q psy16425         68 YMCQVNTDPMKS--QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-----E  140 (163)
Q Consensus        68 Y~C~~~~~~~~~--~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-----~  140 (163)
                      |.|.+.+.....  ....+.+..++...... .....+.+|..+.+.|.+.+.|+|.++|++++..+.......     .
T Consensus        94 Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~  172 (218)
T 4frw_A           94 YECRVSTFPAGSFQARLRLRVLVPPLPSLNP-GPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAA  172 (218)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEBCCCCEEEE-CSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEE
T ss_pred             eeEEEEeccCceeeeEEEEEEeeeccceeee-eeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCCcEE
Confidence            999996653322  22334444443332222 235567788999999999999999999999988765443222     2


Q ss_pred             EeceEEEEcchhhhHh
Q psy16425        141 DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       141 ~~~~l~i~~v~~~~~~  156 (163)
                      ..+.|+|.++..+|++
T Consensus       173 ~~s~L~i~~~~~~d~g  188 (218)
T 4frw_A          173 VTSEFHLVPSRSMNGQ  188 (218)
T ss_dssp             EEEEEEECCCGGGTTC
T ss_pred             EEEEEEEeeCCHHhCe
Confidence            3457999999998875

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.72  E-value=4e-17  Score=109.44  Aligned_cols=140  Identities=13%  Similarity=0.178  Sum_probs=89.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEc--CCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRV--DTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   80 (163)
                      .++.|.|...+ |.+.+.|++.  ++..+        ....++......    .|.|.+++.+|+|.|+|.+.+.+....
T Consensus        25 ~~v~L~C~~~~-p~~~v~w~~~~~~g~~~--------~~~~~~~~~~~~----~l~I~~v~~~D~G~Y~C~a~n~~~~~~   91 (213)
T 2x1w_L           25 KTVVIPCLGSI-SNLNVSLCARYPEKRFV--------PDGNRISWDSKK----GFTIPSYMISYAGMVFCEAKINDESYQ   91 (213)
T ss_dssp             CEEEECCCBSS-TTCCEEEEEETTTEEEC--------CCSSSCEEETTT----EEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred             ccEEEeeccCC-CCcEEEEEhhcCCCccc--------cCCCcccccCCc----cEEEccCChhcCceEEEEEEECCeeEE
Confidence            57888888865 7799999984  34332        111233333322    799999999999999999966533322


Q ss_pred             --eEEEEEEc--CCcccccCCCCcEEEeCCCcEEEEeEeccCC--CCeEEEEECCeEEEe------c-CC-c----eEEe
Q psy16425         81 --VGYLEVVV--PPDILDYPTSTDMVIREGSNVTLKCAASGSP--KPNITWRREGGELIA------Q-GN-G----QEDF  142 (163)
Q Consensus        81 --~~~l~v~~--~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~~~~~~~------~-~~-~----~~~~  142 (163)
                        ...|.+..  +|.+...+. ....+.+|+++.|.|.+.+.|  .+.+.|++++..+..      . .. .    ....
T Consensus        92 s~~~~l~v~~~~~p~~~~~~~-~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  170 (213)
T 2x1w_L           92 SIMYIVVVVGYRIYDVVLSPS-HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL  170 (213)
T ss_dssp             CCCEEEEECBCCEEEEEEESC-SCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEE
T ss_pred             EEEEEEEEeCCcccceEEcCC-CCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeee
Confidence              24555533  222333232 245788999999999999865  457999998875211      1 00 0    2234


Q ss_pred             ceEEEEcchhhhHh
Q psy16425        143 PFFKRTKKKKKKKK  156 (163)
Q Consensus       143 ~~l~i~~v~~~~~~  156 (163)
                      ..|+|.+++.+|.+
T Consensus       171 ~~L~I~~v~~~D~G  184 (213)
T 2x1w_L          171 STLTIDGVTRSDQG  184 (213)
T ss_dssp             EEEEESSCCGGGCE
T ss_pred             EEEEECCCCcccCE
Confidence            57999999999875

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.72  E-value=2.9e-16  Score=119.26  Aligned_cols=153  Identities=10%  Similarity=0.167  Sum_probs=106.1

Q ss_pred             ceeEEEeeeeccCCCEE----EEEE--cCCc-eEEe-eeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTV----AWLR--VDTQ-TILT-IQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i----~W~k--~~~~-~~~~-~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|...+.|.+.+    .|++  ++.. .+.. .+.......+|+.+... ..+.++|.|.+++.+|+|.|+|.++
T Consensus       347 ~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~an  426 (585)
T 2ocw_A          347 SSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTN  426 (585)
T ss_pred             CcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEccc
Confidence            46788899888999887    7998  4331 2221 11112234556666543 2345579999999999999999983


Q ss_pred             eCCCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec----cCCCCeEEEEECCeEEEecCCc------eE---
Q psy16425         74 TDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS----GSPKPNITWRREGGELIAQGNG------QE---  140 (163)
Q Consensus        74 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~----~~p~p~v~W~~~~~~~~~~~~~------~~---  140 (163)
                      ..+.....+.|.|...|.....+  ....+.+|+.+.|.|.+.    +.|.|.+.|++++..+......      ..   
T Consensus       427 ~~g~~~~~~~l~V~~~~p~~~~~--~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~  504 (585)
T 2ocw_A          427 GDTLWRTTVEIKIIEGEPNLKVP--GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDE  504 (585)
T ss_pred             CCCccceeEEEEEecCccccccC--CceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecC
Confidence            33555666777777654444333  356788999999999997    6788899999999887554321      11   


Q ss_pred             --EeceEEEEcchhhhHhh
Q psy16425        141 --DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       141 --~~~~l~i~~v~~~~~~~  157 (163)
                        ....|+|.+++.+|.+.
T Consensus       505 ~~~~~~L~i~~v~~~d~G~  523 (585)
T 2ocw_A          505 NSRLVSLTLNLVTRADEGW  523 (585)
T ss_pred             cccEEEEEECCCCcccCeE
Confidence              12589999999998763

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.72  E-value=2e-16  Score=106.78  Aligned_cols=130  Identities=18%  Similarity=0.338  Sum_probs=86.5

Q ss_pred             ceeEEEeeeeccCC-CEEEEEEcCCc----eEEeeeeeEEecCCeEE----------EEeCCCceEEEEEcccCCCCCeE
Q psy16425          3 ARMLIEIGEMLMAE-STVAWLRVDTQ----TILTIQTHVITKNHRIG----------VTHSETKAWYLHIREVRESDRGW   67 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-~~i~W~k~~~~----~~~~~~~~~~~~~~r~~----------~~~~~~~~~~L~i~~v~~~d~G~   67 (163)
                      ..+.|.|...+.+. +.|.|++.+..    .+............|+.          +...+    .|.|.+++.+|+|.
T Consensus        16 ~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~----~L~i~~v~~~D~G~   91 (231)
T 2pet_A           16 KSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG----RLVLAEAQVGDERD   91 (231)
T ss_dssp             CCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC----CEEESSCCGGGCEE
T ss_pred             CCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc----eEEEcccCcccCce
Confidence            46888999888885 89999985433    22110000000122332          33332    59999999999999


Q ss_pred             EEEEEEeC--CCceEeEEEEEEcCCcccccC-CCCcEEEeCCCcE-EEEeEe-ccCCCCeEEEEECCeEEEecC
Q psy16425         68 YMCQVNTD--PMKSQVGYLEVVVPPDILDYP-TSTDMVIREGSNV-TLKCAA-SGSPKPNITWRREGGELIAQG  136 (163)
Q Consensus        68 Y~C~~~~~--~~~~~~~~l~v~~~p~~~~~~-~~~~~~~~~g~~~-~l~C~~-~~~p~p~v~W~~~~~~~~~~~  136 (163)
                      |+|.+.+.  +.....+.|.|..+|...... ......+.+|+.+ .|.|.+ .+.|.|.+.|++++..+....
T Consensus        92 Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~  165 (231)
T 2pet_A           92 YVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPV  165 (231)
T ss_dssp             EEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCS
T ss_pred             EEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccc
Confidence            99999665  344556678888776432211 1123445678887 999999 899999999999998875554

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.71  E-value=2.4e-16  Score=101.80  Aligned_cols=126  Identities=17%  Similarity=0.244  Sum_probs=93.4

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ..+.|.|...+.| .+.+.|++ ++..+.        ..           ...+.|.+++.+|+|.|+|.+.+ ...+..
T Consensus        20 ~~v~l~C~~~~~p~~~~~~W~~-~g~~~~--------~~-----------~~~~~~~~~~~~d~G~Y~C~~~~-~~~s~~   78 (170)
T 3ry4_A           20 DSVTLTCQGARSPESDSIQWFH-NGNLIP--------TH-----------TQPSYRFKANNNDSGEYTCQTGQ-TSLSDP   78 (170)
T ss_dssp             CEEEEEEESCCCSSSSCEEEEE-TTEECT--------TC-----------CSSEEEEECCGGGCEEEEEEETT-SBCCCC
T ss_pred             CcEEEEEEecCCCCcceEEEEE-CCeEcc--------cC-----------ccceEEEecccccCeEEEEEEeC-CCceEe
Confidence            4678889888876 67999999 554431        11           11567889999999999999964 334455


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..++.....+   ...+.+|+.+.|.|.+. +.|.+.+.|++++..+....    .+..|.|.+++.+|.+
T Consensus        79 ~~l~v~~~~~~~~~~---~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----~~~~L~i~~v~~~d~G  147 (170)
T 3ry4_A           79 VHLTVLFEWLVLQTP---HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH----LDPTFSIPQANHSHSG  147 (170)
T ss_dssp             EEEEEECCSEEEECS---CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES----SCCEEEESSCCGGGCE
T ss_pred             EEEEEECCceEecCC---CceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC----CCCeEEEEeccccCCE
Confidence            778888766554433   34678899999999995 56778999999998875432    2456999999988875

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.71  E-value=3.6e-17  Score=111.85  Aligned_cols=126  Identities=18%  Similarity=0.256  Sum_probs=79.6

Q ss_pred             cceeEEEeeeeccCCCE-----EEEEEcCCce-----EEee-eeeEEecCC--eEEEEeCCCceEEEEEcccCCCCCeEE
Q psy16425          2 AARMLIEIGEMLMAEST-----VAWLRVDTQT-----ILTI-QTHVITKNH--RIGVTHSETKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~-----i~W~k~~~~~-----~~~~-~~~~~~~~~--r~~~~~~~~~~~~L~i~~v~~~d~G~Y   68 (163)
                      ..++.|.|...+.|.+.     |.|++.+...     ++.. +........  ++.......++++|.|.+++.+|+|.|
T Consensus        18 G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   97 (248)
T 3pv7_A           18 NDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEY   97 (248)
T ss_dssp             TSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGGCEEE
T ss_pred             CCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHHCeEE
Confidence            34688999988777765     9999964321     1111 111111111  111111223566899999999999999


Q ss_pred             EEEEEeCC-CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCe
Q psy16425         69 MCQVNTDP-MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGG  130 (163)
Q Consensus        69 ~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~  130 (163)
                      +|.+.+.. .......|.|..+|.+...+.   .....|+.+.|.|.+.+ .|.| .+.|++++.
T Consensus        98 ~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~---~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~  159 (248)
T 3pv7_A           98 RCEVVVTPLKAQGTVQLEVVASPASRLLLD---QVGMKENEDKYMCESSGFYPEAINITWEKQTQ  159 (248)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBCCEEEEECC-----------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred             EEEEEeCCccceeEEEEEEecCCceEEecC---CccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence            99997653 344566788888887665442   23456788889999998 8998 999999985

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.71  E-value=1.8e-16  Score=108.53  Aligned_cols=151  Identities=16%  Similarity=0.227  Sum_probs=95.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCc-e---EEe-eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQ-T---ILT-IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~-~---~~~-~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      .++.|.|...+.|.+.|.|++.+.. .   +.. .........+|+..... .++++|.|.+++.+|+|.|.|.+.+...
T Consensus        20 ~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~n~~~   98 (250)
T 3esu_F           20 DRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGS-GTDYSLTISNLEQEDIGTYFCQQGNTLP   98 (250)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCC-CCEEEEEEccCChhhCEEEEEEEeeCCC
Confidence            4688999999999999999995321 1   111 01111122456654432 3567899999999999999999965422


Q ss_pred             --ceEeEEEEEEcCC-------------------cccccCCCCcEEEeCCCcEEEEeEeccCC--CCeEEEEEC--CeEE
Q psy16425         78 --KSQVGYLEVVVPP-------------------DILDYPTSTDMVIREGSNVTLKCAASGSP--KPNITWRRE--GGEL  132 (163)
Q Consensus        78 --~~~~~~l~v~~~p-------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~--~~~~  132 (163)
                        ......|.|..++                   .....+  ....+.+|+++.|.|.+.+.|  .+.+.|+++  +..+
T Consensus        99 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~  176 (250)
T 3esu_F           99 WTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQS--GPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGP  176 (250)
T ss_dssp             CEECCCEEEEEC------------------------CEEC--CCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCC
T ss_pred             ceECCCEEEEEECCCCcccccccccccccCcccceEEecC--CceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCc
Confidence              2233456665431                   122212  356788999999999998876  789999987  4332


Q ss_pred             Eec-----------------CCceE------EeceEEEEcchhhhHh
Q psy16425        133 IAQ-----------------GNGQE------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       133 ~~~-----------------~~~~~------~~~~l~i~~v~~~~~~  156 (163)
                      ...                 .+...      ....|+|.+++.+|.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG  223 (250)
T 3esu_F          177 EWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSA  223 (250)
T ss_dssp             EEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             EEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCE
Confidence            111                 11111      1126999999999875

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.71  E-value=1.9e-16  Score=112.38  Aligned_cols=128  Identities=15%  Similarity=0.261  Sum_probs=86.1

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCce---EEeeeeeEEecCCeEEEEeCC----CceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQT---ILTIQTHVITKNHRIGVTHSE----TKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~---~~~~~~~~~~~~~r~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...+. |.+.|.|++.+...   +.....   ....|+......    ....+|.|.+++.+|+|.|+|.+.+
T Consensus        19 ~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~---~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   95 (327)
T 2wng_A           19 ESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKE---GHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFR   95 (327)
T ss_dssp             SCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTS---SCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCC---CCcceeeeecccccccCceeEEEEccCccccCeEEEEEeec
Confidence            468888998887 88999999954321   111000   112344433221    3455899999999999999999977


Q ss_pred             CCCc------eEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCC--eEEEEECCeEEEe
Q psy16425         75 DPMK------SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKP--NITWRREGGELIA  134 (163)
Q Consensus        75 ~~~~------~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~~~  134 (163)
                      ....      ...+.|.|...|....... +...+.+|+.+.|.|.+.+.|+|  .+.|++++..+..
T Consensus        96 ~~~~~~~~~~~~~~~l~V~~~p~~p~i~~-~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~  162 (327)
T 2wng_A           96 KGSPDTEFKSGAGTELSVRAKPSAPVVSG-PAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSD  162 (327)
T ss_dssp             SSTTCEEEEECCCEEEEEEBCCCCCEEEC-CSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             CCCcceeEeecCcEEEEEEecCCCceeec-cccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccc
Confidence            6432      1345777877664332221 13457889999999999988766  8999999988743

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.71  E-value=1.5e-17  Score=110.21  Aligned_cols=138  Identities=18%  Similarity=0.186  Sum_probs=89.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC----Cc
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP----MK   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~----~~   78 (163)
                      ..+.|.|...+.|. .+.|+| ++..+...      ...+....    ....|.|.+++.+|+|.|+|.+.+..    ..
T Consensus        20 ~~v~L~C~~~~~~~-~~~W~k-~g~~~~~~------~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~   87 (198)
T 1ugn_A           20 SPVTLRCQGGQETQ-EYRLYR-EKKTAPWI------TRIPQELV----KKGQFPIPSITWEHTGRYRCYYGSDTAGRSES   87 (198)
T ss_dssp             CCEEEEEECCTTCC-CEEEEE-SSSCCHHH------HTSCHHHH----TTTEEEESSCCGGGCEEEEEEEEETTTEECCC
T ss_pred             CcEEEEEEecCCCc-EEEEEE-CCcccccc------ccccccCC----cccEEEECCCCHHHCeEEEEEEECCCCCcccC
Confidence            46888898887776 699999 44433110      00000000    12389999999999999999997753    23


Q ss_pred             eEeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc---eE---EeceEEEEc
Q psy16425         79 SQVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG---QE---DFPFFKRTK  149 (163)
Q Consensus        79 ~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~---~~---~~~~l~i~~  149 (163)
                      +..+.|.|..   .|.+...+   ...+.+|+++.|.|.+.+. .|.+.|++++..+......   ..   ..+.|+|.+
T Consensus        88 s~~~~l~V~~~~~~p~i~~~~---~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~  163 (198)
T 1ugn_A           88 SDPLELVVTGAYIKPTLSAQP---SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGP  163 (198)
T ss_dssp             CCCEEEEEECSSCCCEEEEES---CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECC
T ss_pred             CccEEEEEcccccCCccccCC---ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecc
Confidence            4556777776   23333322   3467899999999999988 7899999999876432111   11   237899999


Q ss_pred             chhhhHh
Q psy16425        150 KKKKKKK  156 (163)
Q Consensus       150 v~~~~~~  156 (163)
                      |+.+|.+
T Consensus       164 v~~~D~G  170 (198)
T 1ugn_A          164 VSPSRRW  170 (198)
T ss_dssp             CCTTSCE
T ss_pred             cCcccCe
Confidence            9999876

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.71  E-value=7.4e-17  Score=115.29  Aligned_cols=139  Identities=14%  Similarity=0.158  Sum_probs=72.7

Q ss_pred             eeEEEeee-----eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-C
Q psy16425          4 RMLIEIGE-----MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-M   77 (163)
Q Consensus         4 ~~~~~~~~-----~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~   77 (163)
                      .+.|.|..     .+.|.+.|.|++ ++..+        ....++....     ..|.|.+++.+|+|.|+|.+.+.. .
T Consensus       137 ~~~l~C~~~~~~~~g~p~~~v~W~k-~~~~l--------~~~~~~~~~~-----~~L~i~~v~~~d~G~Y~C~a~n~~~g  202 (349)
T 4dep_C          137 IQRITCPNVDGYFPSSVKPTITWYM-GCYKI--------QNFNNVIPEG-----MNLSFLIALISNNGNYTCVVTYPENG  202 (349)
T ss_dssp             EEEEECCSCTTSSCTTSCCEEEEEE-TTEEC--------CSCSSEEEET-----TEEEEESCCGGGCEEEEEEEEEEETT
T ss_pred             cEEEEcCCCcccccCCCCceEEEee-CCEEC--------CCccceeecC-----CEEEEeeeeecCCcEEEEEEEEeeCC
Confidence            57788864     678999999999 55543        1112332222     179999999999999999997652 2


Q ss_pred             c----eEeEEEEEEc------CCcccccCCCCcEEEeCCCcEEEEeEec----cCCCCeEEEEECCeEEEe-cCCc----
Q psy16425         78 K----SQVGYLEVVV------PPDILDYPTSTDMVIREGSNVTLKCAAS----GSPKPNITWRREGGELIA-QGNG----  138 (163)
Q Consensus        78 ~----~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~----~~p~p~v~W~~~~~~~~~-~~~~----  138 (163)
                      .    .....|.+..      +|.+...+......+.+|+.+.|.|.+.    +.|.|.+.|++++..+.. ....    
T Consensus       203 ~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~  282 (349)
T 4dep_C          203 RTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINE  282 (349)
T ss_dssp             EEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCE
T ss_pred             EEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCcccccc
Confidence            2    3444555554      3444332211112678899999999998    578999999999988755 1111    


Q ss_pred             ---------eEEeceEEEEcchhhhH-h
Q psy16425        139 ---------QEDFPFFKRTKKKKKKK-K  156 (163)
Q Consensus       139 ---------~~~~~~l~i~~v~~~~~-~  156 (163)
                               ......|+|.+++.+|. +
T Consensus       283 ~~~~~~~~~~~~~~~L~i~~v~~~d~~G  310 (349)
T 4dep_C          283 SISHSRTEDETRTQILSIKKVTSEDLKR  310 (349)
T ss_dssp             EEECCTTCCEEEEECC------------
T ss_pred             ceeeecCCCcEEEEEEEEeeccHHHcCC
Confidence                     11245599999999987 5

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.71  E-value=2.2e-16  Score=107.77  Aligned_cols=130  Identities=18%  Similarity=0.334  Sum_probs=85.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceE---Ee-eeeeE-Eec---CCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTI---LT-IQTHV-ITK---NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~---~~-~~~~~-~~~---~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .++.|.| ..+.+.+.|.||+.. +...   .. ..... ...   .+|+.+.....++++|.|.+++.+|+|.|.|.+.
T Consensus        18 ~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   96 (245)
T 4ei6_B           18 QMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASS   96 (245)
T ss_dssp             CCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCEEEEEEEc
Confidence            4688889 777888999999832 1111   11 11111 111   2788887766678899999999999999999996


Q ss_pred             eC-----CCceEeEEEEEEc------CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEEe
Q psy16425         74 TD-----PMKSQVGYLEVVV------PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELIA  134 (163)
Q Consensus        74 ~~-----~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~  134 (163)
                      +.     ........|.|..      +|.+..... ....+.+|+.+.|.|.+.+ .|.+ .+.|+++|..+..
T Consensus        97 ~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~-~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~  169 (245)
T 4ei6_B           97 FWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  169 (245)
T ss_dssp             CSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             cCCCcceEEEcCCcEEEEecccCCCCCceEEEeCC-CcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCC
Confidence            42     1223345666663      333322221 1223456899999999988 5555 7999999987743

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.71  E-value=6.4e-17  Score=108.13  Aligned_cols=128  Identities=17%  Similarity=0.218  Sum_probs=84.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ceE--Eee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QTI--LTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~--~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-   76 (163)
                      .++.|.|...+.|.+.|.||+.+. ...  ...  .........|+.... ..++++|.|.+++.+|+|.|+|.+.+.. 
T Consensus        17 ~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   95 (213)
T 3r06_A           17 DRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG-SGRDSSFTISSLESEDIGSYYCQQYYNYP   95 (213)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSS
T ss_pred             CcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec-cCCEEEEEECCCCcccCEEEEEecccCCc
Confidence            478899999999999999998431 111  110  111112345666653 3356799999999999999999996542 


Q ss_pred             -CceEeEEEEE---EcCCcccccCCCCcEEEeCCCcEEEEeEeccCCC--CeEEEEECCeEEE
Q psy16425         77 -MKSQVGYLEV---VVPPDILDYPTSTDMVIREGSNVTLKCAASGSPK--PNITWRREGGELI  133 (163)
Q Consensus        77 -~~~~~~~l~v---~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~~~~~~  133 (163)
                       .......|.|   ..+|.+...+.  ......|+.+.|.|.+.+.|+  +.+.|++++..+.
T Consensus        96 ~~~~~~~~l~V~~~~~~p~v~~~~~--~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  156 (213)
T 3r06_A           96 WTFGPGTKLEIKRADAKPTVSIFPP--SSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKR  156 (213)
T ss_dssp             CEECCCEEEEECCCCBCCEEEEECC--CHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             eEEcCCceEEEeccCCCceeeeeCC--CceecCCCCcEEEEEEeeecCCceEEEEEECCcccC
Confidence             2233445666   33444443332  223446888999999987654  3899999998874

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.71  E-value=7.6e-17  Score=126.71  Aligned_cols=144  Identities=22%  Similarity=0.334  Sum_probs=104.3

Q ss_pred             ceeEEEeeeeccCC-CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEMLMAE-STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      ..+.|.|...+.+. +.|.|++ ++..+.        ...++...........|.|.+++.+|+|.|+|.+.|. +....
T Consensus       635 ~~v~L~C~~~~~~~~~~i~W~~-~g~~l~--------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  705 (816)
T 3dmk_A          635 QYLTLHCSVPGGDLPLNIDWTL-DGQAIS--------EDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF  705 (816)
T ss_dssp             CEEEEEEBCCCSSSCCEEEEEE-TTBCCC--------GGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CeEEEEEEEeCCCCCCEEEEEE-CCeEcC--------CCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEE
Confidence            35778888765444 5999999 555442        1122222222334558999999999999999999776 45566


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEE-------EecCCceEEeceEEEEcchhh
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGEL-------IAQGNGQEDFPFFKRTKKKKK  153 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~-------~~~~~~~~~~~~l~i~~v~~~  153 (163)
                      .+.|.|..+|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+       .........++.|.|.+++.+
T Consensus       706 ~~~l~V~~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  783 (816)
T 3dmk_A          706 TTPLNVYVPPRWILEP--TDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKT  783 (816)
T ss_dssp             EEEECEEEEEEEEECC--CCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGG
T ss_pred             EEEEEEEeCCceeeec--ccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChh
Confidence            6788888888876654  3567889999999999999999999999986432       112222345678999999999


Q ss_pred             hHhh
Q psy16425        154 KKKK  157 (163)
Q Consensus       154 ~~~~  157 (163)
                      |.+.
T Consensus       784 d~G~  787 (816)
T 3dmk_A          784 NEGY  787 (816)
T ss_dssp             GCEE
T ss_pred             hCeE
Confidence            9763

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.71  E-value=9.6e-17  Score=112.74  Aligned_cols=136  Identities=23%  Similarity=0.344  Sum_probs=93.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCce--E
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKS--Q   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~--~   80 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+...     ....++.....+    .|.|.+++.+|+|.|+|.+.+.....  .
T Consensus       124 ~~v~l~C~~~g~p~~~v~W~k-~~~~~~~~-----~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  193 (304)
T 2yd9_A          124 RTATMLCAASGNPDPEITWFK-DFLPVDPS-----ASNGRIKQLRSG----ALQIESSEETDQGKYECVATNSAGVRYSS  193 (304)
T ss_dssp             SCEEECCEEECSSCCEEEEEE-TTEECCGG-----GGTTSEEECTTS----CEEECSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CeEEEEEECccCCCCeEEEEE-CCEECcCC-----CCcceEEeCCCe----EEEEccCCcccCEEEEEEEEeCCCCEEec
Confidence            357888999999999999999 55443211     112244333333    79999999999999999997763222  1


Q ss_pred             eEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcc
Q psy16425         81 VGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKK  150 (163)
Q Consensus        81 ~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v  150 (163)
                      ...+.|.+   +|.+...+.  ...+.+|+.+.|.|.+.|.|.|.+.|++++..+............|.|.++
T Consensus       194 ~~~l~v~~~~~~P~~~~~~~--~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~  264 (304)
T 2yd9_A          194 PANLYVRVQNVAPRFSILPM--SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV  264 (304)
T ss_dssp             CEEEEEECCCEEEEEEECCC--CBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC
T ss_pred             cEEEEEEeeccCCcEEecCC--ceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEccc
Confidence            24555543   444444332  355788999999999999999999999999887555433333344666555

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.71  E-value=1.9e-16  Score=114.95  Aligned_cols=144  Identities=18%  Similarity=0.334  Sum_probs=103.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~   80 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+...     ....+......+    +|.|.+++.+|+|.|+|.+.+...  ...
T Consensus       137 ~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~-----~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~  206 (403)
T 3laf_A          137 DTVLLKCEVIGDPMPTIHWQK-NQQDLNPI-----PGDSRVVVLPSG----ALQISRLQPGDSGVYRCSARNPASTRTGN  206 (403)
T ss_dssp             SCEEECCCEECSSCCEEEEEE-SSSBCCCC-----TTCCSEEECTTS----CEEECSCCGGGCEEEEEEEECSSCCCBCC
T ss_pred             CeEEEEEEEcccCCCeEEEEE-CCEecccc-----CCceEEEEcCCc----eEEEcccccccCEEEEEEEEcCCCceecc
Confidence            467888988889999999999 44443110     122333333333    799999999999999999976532  334


Q ss_pred             eEEEEEEcCCcccc----cCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce--EEeceEEEEcchhhh
Q psy16425         81 VGYLEVVVPPDILD----YPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ--EDFPFFKRTKKKKKK  154 (163)
Q Consensus        81 ~~~l~v~~~p~~~~----~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~--~~~~~l~i~~v~~~~  154 (163)
                      ...+.+...|....    ........+.+|+.+.|.|.+.+.|.|.+.|++++..+.......  ..++.|.|.+++.+|
T Consensus       207 ~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  286 (403)
T 3laf_A          207 EAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDD  286 (403)
T ss_dssp             CEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGG
T ss_pred             ceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHH
Confidence            56777777664321    112235667899999999999999999999999998875443332  245789999999998


Q ss_pred             Hh
Q psy16425        155 KK  156 (163)
Q Consensus       155 ~~  156 (163)
                      .+
T Consensus       287 ~G  288 (403)
T 3laf_A          287 SG  288 (403)
T ss_dssp             CE
T ss_pred             CE
Confidence            75

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.70  E-value=2e-16  Score=112.16  Aligned_cols=142  Identities=15%  Similarity=0.104  Sum_probs=101.3

Q ss_pred             eeEEEee-eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          4 RMLIEIG-EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         4 ~~~~~~~-~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .+.|.|. ..+.|.+.|.|++.......  ........+.+....      .|.|.++..+|+|.|+|.+.+. +.....
T Consensus       152 ~~~l~C~~~~~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  223 (331)
T 3u83_A          152 VLVATCTSANGKPPSVVSWETRLKGEAE--YQEIRNPNGTVTVIS------RYRLVPSREAHQQSLACIVNYHMDRFKES  223 (331)
T ss_dssp             EEEEEEEEEEEBSCCEEEEEESSCCEEE--EEEEECTTSCEEEEE------EEEECCCGGGTTCEEEEEEEETTEEEEEE
T ss_pred             eEEEEEEecCCcCCceEEEEcCCCCccc--cceeECCCCcEEEEE------EEEEEeccccCCCEEEEEEecCCCcceee
Confidence            3788886 88899999999994222211  111112233333322      6899999999999999999776 334455


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCe-EEEEECCeEEEecCCceEEeceEEEE-cchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPN-ITWRREGGELIAQGNGQEDFPFFKRT-KKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~~~~~~~~~~~~l~i~-~v~~~~~~  156 (163)
                      +.|.|..+|.+...+. ....+.+|+.+.|.|.+.++|.|. +.|++++..+...  ....++.|.|. +++.+|.+
T Consensus       224 ~~l~V~~~P~~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~--~~~~~~~L~i~~~v~~~d~G  297 (331)
T 3u83_A          224 LTLNVQYEPEVTIEGF-DGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG--VEAQNRTLFFKGPINYSLAG  297 (331)
T ss_dssp             EECCEEEEEEEEEECC-CSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT--EEEETTEEEECSCCCGGGCE
T ss_pred             EEEEEecCCeEEEecC-CCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc--ceecCcEEEEeCCCccccCe
Confidence            6777777776654332 244577899999999999999998 9999999876322  33466789999 89998875

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.70  E-value=7.9e-16  Score=105.95  Aligned_cols=154  Identities=12%  Similarity=0.149  Sum_probs=98.5

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-Cce---EEeee---eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQT---ILTIQ---THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~---~~~~~---~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      ..+.|.|...+.|  .+.|.||+.+ +..   +....   ...  ....+|+.+.... .+.++|.|.+++.+|+|.|.|
T Consensus        16 ~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   95 (257)
T 1f3r_B           16 ETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYC   95 (257)
T ss_dssp             SEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTCCEEEEE
T ss_pred             ceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcccCEEEEE
Confidence            4688999988764  7899999952 111   11100   000  1124677776542 457799999999999999999


Q ss_pred             EEEeCCC-------c---eEeEEEEEEcCCc-------------ccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEE
Q psy16425         71 QVNTDPM-------K---SQVGYLEVVVPPD-------------ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR  127 (163)
Q Consensus        71 ~~~~~~~-------~---~~~~~l~v~~~p~-------------~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~  127 (163)
                      .+.+...       .   ...+.|.|...|.             ...........+.+|+++.|.|.+.+.|.+.+.|++
T Consensus        96 ~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k  175 (257)
T 1f3r_B           96 TRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQ  175 (257)
T ss_dssp             EEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTCEEEEE
T ss_pred             EEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCcEEEEE
Confidence            9976521       1   1234677765431             111111124557899999999999999889999999


Q ss_pred             --CCeEEEe------------cCCceE----EeceEEEEcchhhhHh
Q psy16425        128 --EGGELIA------------QGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       128 --~~~~~~~------------~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                        ++..+..            ..+...    ....|+|.++..+|.+
T Consensus       176 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  222 (257)
T 1f3r_B          176 QKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVA  222 (257)
T ss_dssp             ECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCS
T ss_pred             ECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCE
Confidence              5543211            111111    2247999999999875

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.70  E-value=1.8e-16  Score=105.32  Aligned_cols=138  Identities=15%  Similarity=0.105  Sum_probs=89.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC------
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP------   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~------   76 (163)
                      .++.|.|... .+.+.+.|+|. +..+......     .+.   .....+..|.|.+++.+|+|.|+|.+.+..      
T Consensus        23 ~~v~L~C~~~-~~~~~~~w~k~-g~~~~~~~~~-----~~~---~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~   92 (201)
T 1nkr_A           23 ETVILQCWSD-VMFEHFLLHRE-GMFNDTLRLI-----GEH---HDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVS   92 (201)
T ss_dssp             CCEEEEEEES-SCCSEEEEEEE-SSSCEEEEEE-----CEE---ETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCC
T ss_pred             CcEEEEEecc-CCCCEEEEEEC-CCcCCcceee-----eec---CCCCceEEEEeccCCcccCeEEEEeEecCCCCcccc
Confidence            3678888876 47789999995 4433211100     000   111123489999999999999999996431      


Q ss_pred             CceEeEEEEEEcC---CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCC-ce----EEeceEEEE
Q psy16425         77 MKSQVGYLEVVVP---PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN-GQ----EDFPFFKRT  148 (163)
Q Consensus        77 ~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~-~~----~~~~~l~i~  148 (163)
                      ..+..+.|.|...   |.+...+   ...+.+|+++.|.|.+.+ |.+.+.|++++..+..... ..    ..++.|.|.
T Consensus        93 ~~s~~~~l~V~~~~~~p~i~~~p---~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~  168 (201)
T 1nkr_A           93 APSDPLDIVIIGLYEKPSLSAQP---GPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLG  168 (201)
T ss_dssp             CCCCCEEEEEECSSCCCEEEEES---CSEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEE
T ss_pred             CCCCCEEEEeeccCCCCceecCC---CCccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEeC
Confidence            2234556777653   3443333   236789999999999986 5689999999876533211 11    125689999


Q ss_pred             cchhhhHh
Q psy16425        149 KKKKKKKK  156 (163)
Q Consensus       149 ~v~~~~~~  156 (163)
                      +|+  |++
T Consensus       169 ~v~--d~G  174 (201)
T 1nkr_A          169 PAT--HGG  174 (201)
T ss_dssp             ECC--SCE
T ss_pred             CcC--CCe
Confidence            997  654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.70  E-value=1.7e-16  Score=107.13  Aligned_cols=128  Identities=18%  Similarity=0.304  Sum_probs=85.0

Q ss_pred             cceeEEEeeeeccCCC---EEEEEEcCCceEEe--eeeeE------EecCCeEEEEeCC--CceEEEEEcccCCCCCeEE
Q psy16425          2 AARMLIEIGEMLMAES---TVAWLRVDTQTILT--IQTHV------ITKNHRIGVTHSE--TKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~---~i~W~k~~~~~~~~--~~~~~------~~~~~r~~~~~~~--~~~~~L~i~~v~~~d~G~Y   68 (163)
                      +.++.|.|...+.+.+   .|.|+|.+......  ..+..      .....|+......  .++++|.|.+++.+|+|.|
T Consensus        19 G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   98 (226)
T 4f80_A           19 GEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKY   98 (226)
T ss_dssp             TSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchHHCeeE
Confidence            3468899987665554   79999955433211  11111      1123455555443  3578999999999999999


Q ss_pred             EEEEEeCCCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCCeEEEEECCeEE
Q psy16425         69 MCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKPNITWRREGGEL  132 (163)
Q Consensus        69 ~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~  132 (163)
                      +|.+.+. .......+.+...+.....+  ....+.+|+.+.|.|.+.+ .|.|.++|+++++.+
T Consensus        99 ~C~a~n~-~~~~~~~v~~~~~~~~~~~~--~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~  160 (226)
T 4f80_A           99 LCYFQDG-DFYEKALVELKVAALGSDLH--VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGEN  160 (226)
T ss_dssp             EEEEEET-TEEEEEEEEEEEEBCCCCCE--EEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCB
T ss_pred             EEEEECC-CcEEEEEEEEeeccceeccc--ceeeeccCCceeeEEEeccCCCCCEEEEEECCceE
Confidence            9999764 33444455555444333322  3456778999999999987 699999999976554

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.70  E-value=8.4e-17  Score=109.06  Aligned_cols=151  Identities=15%  Similarity=0.216  Sum_probs=94.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      .++.|.|...+.+.+.|.||+.+ +..   +... .........|+.... ..++++|.|.+++.+|+|.|.|.+.+...
T Consensus        40 ~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  118 (237)
T 3sob_L           40 DRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG-SGTDFTLTISSLQPEDFATYYCQQSYTTP  118 (237)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc-CCCEEEEEECCCChhhCeEEEEeeccCCc
Confidence            46889999888889999999953 111   1111 111112245666653 23567899999999999999999965432


Q ss_pred             --ceEeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEecc-CC-CCeEEEEECCeEEEecC----C-------ce
Q psy16425         78 --KSQVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASG-SP-KPNITWRREGGELIAQG----N-------GQ  139 (163)
Q Consensus        78 --~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~p~v~W~~~~~~~~~~~----~-------~~  139 (163)
                        ......+.|..   +|.+...+.  .....+|+.+.|.|.+.+ .| .|.+.|++++..+....    .       ..
T Consensus       119 ~~~~~~~~l~V~~~~~~p~v~~~~~--~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~  196 (237)
T 3sob_L          119 PTFGQGTKVEIKRTVAAPSVFIFPP--SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTY  196 (237)
T ss_dssp             CEECCCEEEEEECCCBCCEEEEECC--CHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCE
T ss_pred             eEEcCcEEEEEecCCCCCceEEeCC--ChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcE
Confidence              23334566643   333332221  112335888999999987 55 58999999998765321    0       01


Q ss_pred             EEeceEEEEcchhhhHh
Q psy16425        140 EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 ~~~~~l~i~~v~~~~~~  156 (163)
                      .....|.|..+..+|++
T Consensus       197 ~~~s~L~i~~~~~~d~g  213 (237)
T 3sob_L          197 SLSSTLTLSKADYEKHK  213 (237)
T ss_dssp             EEEEEEEEEHHHHTTCC
T ss_pred             EEEEEEEEcHHHccCCC
Confidence            12345777777766643

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.70  E-value=9.2e-16  Score=105.47  Aligned_cols=152  Identities=16%  Similarity=0.212  Sum_probs=98.4

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceEEee---------eeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTILTI---------QTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~~~~---------~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.+  .+.|.||+.. +......         ........+|+.+.... .+.++|.|.+++.+|+|.|.
T Consensus        18 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   97 (256)
T 3umt_A           18 ASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSEDSAVYY   97 (256)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcccCEEEE
Confidence            3678888877655  7899999853 2222111         01111234677776543 35678999999999999999


Q ss_pred             EEEEeC-----CCceEeEEEEEEc----------------CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         70 CQVNTD-----PMKSQVGYLEVVV----------------PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        70 C~~~~~-----~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      |.+.+.     ........|.|..                +|.+...+  ....+.+|+++.|.|.+.+.|.+.+.|+++
T Consensus        98 C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~  175 (256)
T 3umt_A           98 CARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSP--SSLSASLGERVSITCRASQDIGSNLNWLQQ  175 (256)
T ss_dssp             EEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEEC--SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             EEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCC--CeEEEECCCCEEEEEEEecCCCcEEEEEEE
Confidence            999654     1122345566653                33444333  356788999999999999998889999984


Q ss_pred             --CeEEE--e----------cCCceE----EeceEEEEcchhhhHh
Q psy16425        129 --GGELI--A----------QGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       129 --~~~~~--~----------~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                        +..+.  .          ..+...    ....|+|.+++.+|.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  221 (256)
T 3umt_A          176 KPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFV  221 (256)
T ss_dssp             CTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCS
T ss_pred             CCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCE
Confidence              22211  0          011111    1235999999999875

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.70  E-value=3.1e-16  Score=105.56  Aligned_cols=150  Identities=17%  Similarity=0.278  Sum_probs=94.8

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceE---Eee-e-----eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTI---LTI-Q-----THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGW   67 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~---~~~-~-----~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~   67 (163)
                      .++.|.|...+.+  .+.|.||+.+ +...   ... .     ...  ....+|+.+..+. .++++|.|.+++.+|+|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   95 (222)
T 1q9r_B           16 GSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSAT   95 (222)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCCcccCeE
Confidence            4688999887654  7899999854 2211   110 0     000  1124677777543 457799999999999999


Q ss_pred             EEEEEEeCC------CceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEEEec
Q psy16425         68 YMCQVNTDP------MKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGELIAQ  135 (163)
Q Consensus        68 Y~C~~~~~~------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~~~  135 (163)
                      |.|.+.+..      .......|.|..    +|.+...+.  ...+.+|+.+.|.|.+.|. |.| .+.|++++..+...
T Consensus        96 Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~  173 (222)
T 1q9r_B           96 YYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAP--GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH  173 (222)
T ss_dssp             EEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECC--CSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             EEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccc--cccccCCCcEEEEEEEccEECCCCEEEEecCCeEcceE
Confidence            999996543      222345677764    233333221  1124579999999999985 888 99999998653110


Q ss_pred             -------CCceEEeceEEEEcchhhh
Q psy16425        136 -------GNGQEDFPFFKRTKKKKKK  154 (163)
Q Consensus       136 -------~~~~~~~~~l~i~~v~~~~  154 (163)
                             .........|.|..+..+|
T Consensus       174 ~~~~~~~~~~~~~~s~L~i~~~~~~d  199 (222)
T 1q9r_B          174 TFPAVLQSDLYTLSSSVTVPSSTWPS  199 (222)
T ss_dssp             EEEEEEETTEEEEEEEEEEETTTTTT
T ss_pred             eccccccCCcEEEEEEEEECchhcCC
Confidence                   1111123467888877665

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.70  E-value=9.2e-16  Score=100.24  Aligned_cols=133  Identities=13%  Similarity=0.223  Sum_probs=94.1

Q ss_pred             ceeEEEeeeeccCCC--EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceE
Q psy16425          3 ARMLIEIGEMLMAES--TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~--~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   80 (163)
                      ..+.|.|...+.+.+  .+.|++ ++..+..        ....      .....|.|.  +.+|+|.|+|.+.+.  ...
T Consensus        14 ~~v~l~C~~~~~~~p~~~~~W~k-~~~~l~~--------~~~~------~~~~~l~i~--~~~d~G~Y~C~~~n~--~~~   74 (184)
T 3b5h_A           14 SKILLTCSLNDSATEVTGHRWLK-GGVVLKE--------DALP------GQKTEFKVD--SDDQWGEYSCVFLPE--PMG   74 (184)
T ss_dssp             TEEEEEEEEESCSSCCCEEEEES-SSEEEEC--------TTCC------CSEEEEEEC--GGGCCEEEEEEEEST--TSC
T ss_pred             CCEEEEEECCCCCCCceEEEEEe-CCEEeec--------cccc------CCcEEEEEe--chhhCeEEEEEEECC--cCc
Confidence            467888887776666  999999 5554421        1100      112356666  689999999999763  345


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCC-CCeEEEEE---CCeEEEecC---CceE----EeceEEEEc
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSP-KPNITWRR---EGGELIAQG---NGQE----DFPFFKRTK  149 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~p~v~W~~---~~~~~~~~~---~~~~----~~~~l~i~~  149 (163)
                      .+.|.|.++|.+...+  ....+.+|+.+.|.|.+.+.| .|.+.|++   ++..+....   +...    ....|.|.+
T Consensus        75 ~~~l~V~~~P~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  152 (184)
T 3b5h_A           75 TANIQLHGPPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN  152 (184)
T ss_dssp             EEEEEECCSCCCEESC--SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECS
T ss_pred             EEEEEEecCCceeecC--CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEee
Confidence            6788888888877655  356788999999999999999 79999999   555543321   1111    124799999


Q ss_pred             ch-hhhHh
Q psy16425        150 KK-KKKKK  156 (163)
Q Consensus       150 v~-~~~~~  156 (163)
                      ++ .+|.+
T Consensus       153 v~~~~d~G  160 (184)
T 3b5h_A          153 LNMEADPG  160 (184)
T ss_dssp             CCTTTSSE
T ss_pred             ccccccCc
Confidence            98 88865

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.69  E-value=1.2e-16  Score=106.80  Aligned_cols=150  Identities=17%  Similarity=0.188  Sum_probs=96.0

Q ss_pred             ceeEEEeeeecc-------CCCEEEEEEcCCc----eEEeeee----eEEecCCeEEEEeCC-CceEEEEEcccCCCCCe
Q psy16425          3 ARMLIEIGEMLM-------AESTVAWLRVDTQ----TILTIQT----HVITKNHRIGVTHSE-TKAWYLHIREVRESDRG   66 (163)
Q Consensus         3 ~~~~~~~~~~~~-------~~~~i~W~k~~~~----~~~~~~~----~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G   66 (163)
                      .++.|.|.....       +.+.|.||+.+..    .+.....    ......+|+.+..+. .++++|.|.+++.+|+|
T Consensus        16 ~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   95 (214)
T 2zg1_A           16 LCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTG   95 (214)
T ss_dssp             CCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCCGGGCE
T ss_pred             ccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCCHhhCc
Confidence            467888887644       5789999995431    1111100    011234677766542 34668999999999999


Q ss_pred             EEEEEEEeCCCc-----eEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC----CCCeEEEEECCeEEEecCC
Q psy16425         67 WYMCQVNTDPMK-----SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS----PKPNITWRREGGELIAQGN  137 (163)
Q Consensus        67 ~Y~C~~~~~~~~-----~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~----p~p~v~W~~~~~~~~~~~~  137 (163)
                      .|.|.+.+....     ...+.|.|...+..+......  .+.+|+.+.|.|.+.+.    |.|.+.|++++..+...  
T Consensus        96 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~--  171 (214)
T 2zg1_A           96 SYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP--  171 (214)
T ss_dssp             EEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS--
T ss_pred             eEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC--
Confidence            999999765311     135667777643221111111  25689999999999764    88999999998653221  


Q ss_pred             ceEEeceEEEEcchhhhHh
Q psy16425        138 GQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       138 ~~~~~~~l~i~~v~~~~~~  156 (163)
                      .....+.|+|..+..+|.+
T Consensus       172 ~~~~~~~L~i~~~~~~~~g  190 (214)
T 2zg1_A          172 ETTRSSELTLTPRPEDHGT  190 (214)
T ss_dssp             SCCCSSEEEECCCTTCCSC
T ss_pred             CceeEEEEEEecccHHcCc
Confidence            1235567888888777753

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.69  E-value=2.2e-16  Score=107.86  Aligned_cols=131  Identities=20%  Similarity=0.360  Sum_probs=85.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c---eEEeee---eeEEe---cCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q---TILTIQ---THVIT---KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~---~~~~~~---~~~~~---~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .++.|.|...+.+.+.|.||+... .   .+....   .....   ..+|+.+.....++++|.|.+++.+|+|.|.|.+
T Consensus        17 ~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   96 (246)
T 4dzb_B           17 TSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICSA   96 (246)
T ss_dssp             SCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHCEEEEEEE
Confidence            468899988888999999998421 1   111111   11111   1267777654456789999999999999999999


Q ss_pred             EeCC-----CceEeEEEEEEc------CCcccccCCCCcEEEeCCCcEEEEeEeccCCCC--eEEEEECCeEEEe
Q psy16425         73 NTDP-----MKSQVGYLEVVV------PPDILDYPTSTDMVIREGSNVTLKCAASGSPKP--NITWRREGGELIA  134 (163)
Q Consensus        73 ~~~~-----~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~~~  134 (163)
                      .+..     .......|.|..      +|.+..... ....+.+|+.+.|.|.+.+.|++  .+.|++++..+..
T Consensus        97 ~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~-~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  170 (246)
T 4dzb_B           97 RTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  170 (246)
T ss_dssp             CCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             ecCCCCcceEEcCCEEEEEecCCCcccCCceEeecC-CchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCC
Confidence            6432     122344566664      333322211 12234568999999999986654  8999999987743

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.69  E-value=5.2e-16  Score=103.68  Aligned_cols=151  Identities=13%  Similarity=0.205  Sum_probs=92.9

Q ss_pred             ceeEEEeeeeccC---CCEEEEEEcC-CceEEeee----eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMA---ESTVAWLRVD-TQTILTIQ----THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~---~~~i~W~k~~-~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|...+.|   .+.|.||+.+ +..+....    ........|+.... ..++++|.|.+++.+|+|.|.|.+.+
T Consensus        16 ~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (212)
T 1q0x_L           16 ETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL-IGDKAALTITGAQTEDEAIYFCALWS   94 (212)
T ss_dssp             CCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe-eCCEEEEEECCCCccCCEEEEEEEec
Confidence            4688999988776   4789999953 22221100    00001235666554 23466899999999999999999976


Q ss_pred             CCCc--eEeEEEEEE----cCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEEEecCC---ce----
Q psy16425         75 DPMK--SQVGYLEVV----VPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGELIAQGN---GQ----  139 (163)
Q Consensus        75 ~~~~--~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~~~~~---~~----  139 (163)
                      ....  .....|.|.    .+|.+...+.  .....+|+.+.|.|.+.+. |++ .+.|++++..+.....   ..    
T Consensus        95 ~~~~~~~~~~~l~V~~~~~~~P~v~~~~~--~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~  172 (212)
T 1q0x_L           95 NNKLVFGGGTKLTVLGQPKSSPTVTLFPP--SSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSN  172 (212)
T ss_dssp             SSCEEECCCEEEEECCSCCBCCEEEEECC--CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTT
T ss_pred             CchhhcCCCeEEEEecCCCCCCeeEEeCC--CHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCC
Confidence            5321  233455553    2444433222  1123468899999999885 443 8999999987643211   00    


Q ss_pred             ---EEeceEEEEcchhhhHh
Q psy16425        140 ---EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 ---~~~~~l~i~~v~~~~~~  156 (163)
                         .....|.|..+..+|.+
T Consensus       173 g~~~~~s~L~i~~~~~~d~g  192 (212)
T 1q0x_L          173 NKYMASSYLTLTARAWERHS  192 (212)
T ss_dssp             SCEEEEEEEEEEHHHHTTCC
T ss_pred             CCEEEEEEEEEcHHHccCCC
Confidence               12246788887776654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.69  E-value=1.1e-16  Score=112.55  Aligned_cols=154  Identities=15%  Similarity=0.247  Sum_probs=101.3

Q ss_pred             ceeEEEeeee-ccCCCEEEEEEcCCceEEeee------eeE--EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEM-LMAESTVAWLRVDTQTILTIQ------THV--ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~------~~~--~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .++.|.|... +.+.+.|.|+|.++.......      ...  ....+|+.+.....++.+|.|.+++.+|+|.|+|.+.
T Consensus        15 ~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~   94 (308)
T 4fom_A           15 KNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKYICKAV   94 (308)
T ss_dssp             SCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCEEEEEEEE
T ss_pred             CcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCEEEEEEEe
Confidence            4688888754 455567999996543322111      001  1224566655544566789999999999999999997


Q ss_pred             eCCC--ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEecCCc-----eEEeceE
Q psy16425         74 TDPM--KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQGNG-----QEDFPFF  145 (163)
Q Consensus        74 ~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~-----~~~~~~l  145 (163)
                      +...  ......+.+...|...............|+.+.|.|.+ .|.|.|.+.|++++..+......     ......|
T Consensus        95 n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l  174 (308)
T 4fom_A           95 TFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQY  174 (308)
T ss_dssp             ETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEE
T ss_pred             eCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccc
Confidence            7533  33445666777666544333334445668899999986 58999999999998776433211     1233568


Q ss_pred             EEEcchhhhHh
Q psy16425        146 KRTKKKKKKKK  156 (163)
Q Consensus       146 ~i~~v~~~~~~  156 (163)
                      .|..+..+|.+
T Consensus       175 ~i~~~~~~d~g  185 (308)
T 4fom_A          175 KLFPTRFARGR  185 (308)
T ss_dssp             EECCCGGGTTC
T ss_pred             eEEeeeecCCc
Confidence            88888888765

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.69  E-value=3.1e-17  Score=116.54  Aligned_cols=143  Identities=20%  Similarity=0.357  Sum_probs=97.0

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVG   82 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~   82 (163)
                      .+.|.|...+.|.+.|.|++ ++..+.        ...++..........+|.|.+++.+|+|.|+|.+.+. +.....+
T Consensus       140 ~v~l~C~~~g~p~~~v~W~~-~~~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  210 (334)
T 1ry7_B          140 TVRFRCPAAGNPTPSISWLK-NGREFR--------GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTY  210 (334)
T ss_dssp             CEEEECCCCCSSCCEEECCB-TTBCCC--------TTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEE
T ss_pred             cEEEEEEccCCCCCeEEEEE-CCEECc--------ccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEE
Confidence            57888999889999999999 554432        1111111111123448999999999999999999776 3344556


Q ss_pred             EEEEEcCC----cccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEE----CCeEEEecCCce----E---------E
Q psy16425         83 YLEVVVPP----DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR----EGGELIAQGNGQ----E---------D  141 (163)
Q Consensus        83 ~l~v~~~p----~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~----~~~~~~~~~~~~----~---------~  141 (163)
                      .|.|...+    .+.. .......+.+|+.+.|.|.+.+.|.|.+.|++    ++..+.......    .         .
T Consensus       211 ~l~V~~~~~~~p~~~~-~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  289 (334)
T 1ry7_B          211 TLDVLERSPHRPILQA-GLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKE  289 (334)
T ss_dssp             EEEEECCCCSSCBCCT-TCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTT
T ss_pred             EEEEecCCCCCCceEe-cCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCcccccccc
Confidence            67776532    2221 11235678899999999999999999999999    565543322210    0         1


Q ss_pred             eceEEEEcchhhhHh
Q psy16425        142 FPFFKRTKKKKKKKK  156 (163)
Q Consensus       142 ~~~l~i~~v~~~~~~  156 (163)
                      ...|.|.+++.+|.+
T Consensus       290 ~~~L~i~~v~~~d~G  304 (334)
T 1ry7_B          290 LEVLSLHNVTFEDAG  304 (334)
T ss_dssp             CCCEEECSCCTTSCS
T ss_pred             ccEEEEccCCHHHCE
Confidence            137999999998875

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.69  E-value=6.8e-17  Score=108.56  Aligned_cols=151  Identities=18%  Similarity=0.293  Sum_probs=93.3

Q ss_pred             ceeEEEeeeeccCC-----CEEEEEEcCCceE-Eee-eee--EEecCCeEEEEeCC--CceEEEEEcccCCCCCeEEEEE
Q psy16425          3 ARMLIEIGEMLMAE-----STVAWLRVDTQTI-LTI-QTH--VITKNHRIGVTHSE--TKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-----~~i~W~k~~~~~~-~~~-~~~--~~~~~~r~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .++.|.|...+.+.     +.|.|++.+.... ... ...  .....+|+.+....  .++.+|.|.+++.+|+|.|+|.
T Consensus        11 ~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   90 (222)
T 4i0k_A           11 TDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEGSYTCF   90 (222)
T ss_dssp             SCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCSCEEEE
T ss_pred             CCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCEEEEEE
Confidence            46888898776654     7899999653321 111 111  12335566654421  2356899999999999999999


Q ss_pred             EEeCCCceEeEEEEEEcC---CcccccCCCCcEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEec-CCceE---Ee-
Q psy16425         72 VNTDPMKSQVGYLEVVVP---PDILDYPTSTDMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQ-GNGQE---DF-  142 (163)
Q Consensus        72 ~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~-~~~~~---~~-  142 (163)
                      +.+.+.....+.|.|..+   |.+...+   ...+.+|+.+.|.|.+ .+.|.|.+.|+++++..... .....   .. 
T Consensus        91 ~~~~~~~~~~~~l~V~~~~~~p~i~~~~---~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~  167 (222)
T 4i0k_A           91 VSIQDFDSAAVSLQVAAPYSKPSMTLEP---NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERG  167 (222)
T ss_dssp             EEECCCCCCCCCCCCCBCCCCCEEECCC--------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTS
T ss_pred             EEeCCCceEEEEEEEEcCCCCCcEEeCC---CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCC
Confidence            976654445555666554   3333222   3456789999999999 78999999999854332211 11111   11 


Q ss_pred             --ceEEEEcchhhhHh
Q psy16425        143 --PFFKRTKKKKKKKK  156 (163)
Q Consensus       143 --~~l~i~~v~~~~~~  156 (163)
                        ..|.|.+++.+|.+
T Consensus       168 ~~~~l~i~~v~~~d~G  183 (222)
T 4i0k_A          168 LFDVHSVLRVVLGANG  183 (222)
T ss_dssp             CEEEEEEEEEECCTTC
T ss_pred             eEEEEEEEEEEeCCCC
Confidence              23778888888865

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.69  E-value=8.1e-16  Score=115.49  Aligned_cols=151  Identities=15%  Similarity=0.170  Sum_probs=98.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEE---ee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTIL---TI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~---~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..+.|.|...+.|.+.|.||+.+ +..+.   .. ........+|+... ...+..+|.|.+++.+|+|.|+|.+.+...
T Consensus        16 ~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g   94 (523)
T 2rcj_C           16 QRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGS-KSGTSASLAISGLEAEDESDYYCASWNSSD   94 (523)
T ss_pred             CcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEe-cCCCEEEEEECCCChhhCEEEEEEEccCCC
Confidence            46889999988899999999953 22211   10 00011123566633 223466899999999999999999976421


Q ss_pred             ----ceEeEEEEEE----cCCcccccCCCCcEEEeCCCcEEEEeEeccCCCC--eEEEEECCeEEEecCCce--------
Q psy16425         78 ----KSQVGYLEVV----VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKP--NITWRREGGELIAQGNGQ--------  139 (163)
Q Consensus        78 ----~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~~~~--------  139 (163)
                          ....+.|.|.    .+|.+...+.  ...+.+|+.+.|.|.+.|.|++  .+.|++++..+.......        
T Consensus        95 ~~~~~~~~~~l~V~~~~~~~P~~~~~~~--~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~  172 (523)
T 2rcj_C           95 NSYVFGTGTKVTVLGQPKANPTVTLFPP--SSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNN  172 (523)
T ss_pred             ccccccCceEEEeccCCCcCCeEEecCC--cccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCC
Confidence                2234566663    3454443332  3345679999999999988764  899999998764321111        


Q ss_pred             --EEeceEEEEcchhhhHh
Q psy16425        140 --EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 --~~~~~l~i~~v~~~~~~  156 (163)
                        .....|.|.++..+|++
T Consensus       173 ~~~~~s~L~i~~~~~~d~G  191 (523)
T 2rcj_C          173 KYAASSYLSLTPEQWKSHR  191 (523)
T ss_pred             CEEEEEEEEEechhcCCCc
Confidence              11246889999888875

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.69  E-value=4.1e-16  Score=107.57  Aligned_cols=121  Identities=16%  Similarity=0.284  Sum_probs=79.9

Q ss_pred             ceeEEEeeee---ccCCCEEEEEEcCCce-----E-Eeeeee---EEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEM---LMAESTVAWLRVDTQT-----I-LTIQTH---VITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~---~~~~~~i~W~k~~~~~-----~-~~~~~~---~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...   +.+.+.|.|++.+...     + ......   .....+|+.+.... .++.+|.|.+++.+|+|.|+
T Consensus        21 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  100 (268)
T 3mj6_A           21 ESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYT  100 (268)
T ss_dssp             CCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHhHCEEEE
Confidence            4678888876   6778899999954321     1 111000   01123566654322 34568999999999999999


Q ss_pred             EEEEeCC-CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEe---ccCCCCeEEEEEC
Q psy16425         70 CQVNTDP-MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAA---SGSPKPNITWRRE  128 (163)
Q Consensus        70 C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~p~v~W~~~  128 (163)
                      |.+.+.. .......+.+.+.+..     .....+.+|+++.|.|.+   .+.|.|.+.|+++
T Consensus       101 C~~~~~~~~~~~~~~~~l~V~~~~-----p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~  158 (268)
T 3mj6_A          101 CEIRLKNESMVMKKPVELWVLPEE-----PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS  158 (268)
T ss_dssp             EEEEETTCCCEEEEEEEEEEECCC-----CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred             EEEEecCCcceEEEEEEEEEeccC-----CCccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence            9997652 3323334444433221     135678899999999999   5779999999984

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.69  E-value=7.2e-17  Score=106.20  Aligned_cols=127  Identities=14%  Similarity=0.183  Sum_probs=83.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcc-cCCCCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIRE-VRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      ..+.|.|...+ +. .|.|+| ++..+...              .    +.+|.|.+ ++.+|+|.|+|.+.+. +....
T Consensus        15 ~~v~L~C~~~~-~~-~i~W~k-~g~~l~~~--------------~----~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~   73 (186)
T 1jbj_A           15 TSVELTCPLDS-DE-NLKWEK-NGQELPQK--------------H----DKHLVLQDFSEVEDSGYYVCYTPASNKNTYL   73 (186)
T ss_dssp             TEEEEECSSCC-CT-TCEEEE-TTEEECSC--------------C----CSEEEEESCCTTTSCEEEEEECSSCCCCCCE
T ss_pred             cEEEEEEeCCC-CC-ceEEEE-CCEECCCC--------------C----CCEEEECCCCccccCEEEEEEEEeCCCcEEE
Confidence            46788888877 43 499999 56554210              1    12799999 9999999999999665 33233


Q ss_pred             eEEEEEEc--CCcc----------------cc--cCCCCc---EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCC
Q psy16425         81 VGYLEVVV--PPDI----------------LD--YPTSTD---MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN  137 (163)
Q Consensus        81 ~~~l~v~~--~p~~----------------~~--~~~~~~---~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~  137 (163)
                      ...+.+..  ++..                ..  ......   ..+.+|+++.|.|.+   |.|.+.|++++..+.... 
T Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~-  149 (186)
T 1jbj_A           74 YLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLN-  149 (186)
T ss_dssp             EECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSS-
T ss_pred             EEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccC-
Confidence            33333222  1110                00  000001   123489999999998   889999999999875332 


Q ss_pred             ceEEeceEEEEcchhhhHh
Q psy16425        138 GQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       138 ~~~~~~~l~i~~v~~~~~~  156 (163)
                        ..++.|.|.+++.+|++
T Consensus       150 --~~~~~L~i~~v~~~D~G  166 (186)
T 1jbj_A          150 --ATKNTWNLGNNAKDPRG  166 (186)
T ss_dssp             --CCSSCCEEEETTSCCEE
T ss_pred             --CCcceEEECCCCcCcCE
Confidence              25577999999998876

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.68  E-value=8.4e-16  Score=117.95  Aligned_cols=132  Identities=19%  Similarity=0.314  Sum_probs=97.4

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceEe
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQV   81 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~~   81 (163)
                      .+.|.|... .|.+.+.|++ ++..+.        ...++.+...   +..|.|.+++.+|+|.|+|.+.|...  .+..
T Consensus       484 ~v~l~C~~~-~~~~~i~W~~-~g~~l~--------~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~  550 (642)
T 1e07_A          484 AVAFTCEPE-AQNTTYLWWV-NGQSLP--------VSPRLQLSNG---NRTLTLFNVTRNDARAYVCGIQNSVSANRSDP  550 (642)
T ss_pred             eEEEEEECC-CCCcEEEEEE-CCEeCC--------CCCcEEEcCC---CcEEEEeecChhcCceEEEEeEcCCCCccCCC
Confidence            567778777 4889999999 555442        2334444332   23899999999999999999977632  2335


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..+|....... ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..       +..|.|.+++.+|.+
T Consensus       551 ~~l~V~~~p~~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~-------~~~L~i~~~~~~d~G  617 (642)
T 1e07_A          551 VTLDVLYGPDTPIISP-PDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH-------TQVLFIAKITPNNNG  617 (642)
T ss_pred             EEEEEEeCCCcceecC-CceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc-------CceEEECcccccCCe
Confidence            7888887665333222 356788999999999999999999999999987643       246888888888765

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.68  E-value=3.3e-15  Score=104.22  Aligned_cols=151  Identities=17%  Similarity=0.209  Sum_probs=96.6

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcCC-ceEE---eee------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVDT-QTIL---TIQ------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~~-~~~~---~~~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.+  .+.|.||+.+. ....   ...      .......+|+.+.... .+.++|.|.+++.+|+|.|.
T Consensus        42 ~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~  121 (282)
T 1qok_A           42 TSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYY  121 (282)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChhhCEEEE
Confidence            4678888877664  68999999642 2111   100      0001124677766542 35679999999999999999


Q ss_pred             EEEEeCCC------ceEeEEEEEEcCCc---------------ccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEE-
Q psy16425         70 CQVNTDPM------KSQVGYLEVVVPPD---------------ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR-  127 (163)
Q Consensus        70 C~~~~~~~------~~~~~~l~v~~~p~---------------~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~-  127 (163)
                      |.+.+...      ....+.|.|...|.               +...+  ....+.+|+++.|.|.+.+.| +.+.|++ 
T Consensus       122 C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~  198 (282)
T 1qok_A          122 CNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSP--AIMSASPGEKVTITCSASSSV-SYMHWFQQ  198 (282)
T ss_dssp             EEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEEC--SEEEECTTCCEEEEEEESSCC-SCCEEEEE
T ss_pred             EEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCC--CEEEEcCCCcEEEEEEecCCC-ceEEEEEE
Confidence            99976532      11334677766431               22212  356688999999999999988 8999999 


Q ss_pred             -CCeEEEe------------cCCceE----EeceEEEEcchhhhHh
Q psy16425        128 -EGGELIA------------QGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       128 -~~~~~~~------------~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                       ++..+..            ..+...    ....|+|.++..+|.+
T Consensus       199 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  244 (282)
T 1qok_A          199 KPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAA  244 (282)
T ss_dssp             CTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCE
Confidence             5543311            111111    2346999999999875

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.68  E-value=9.3e-16  Score=103.09  Aligned_cols=150  Identities=17%  Similarity=0.275  Sum_probs=94.3

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-Cce---EEeee--------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQT---ILTIQ--------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGW   67 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~---~~~~~--------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~   67 (163)
                      .++.|.|...+.+  .+.|.||+.+ +..   +....        .......+|+.+..+. .++++|.|.+++.+|+|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   95 (220)
T 1pz5_B           16 GSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGI   95 (220)
T ss_dssp             CCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCCHHHCEE
Confidence            4688899887665  7899999953 221   11110        0001124677776543 356799999999999999


Q ss_pred             EEEEEEeCCC----ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeE----EE
Q psy16425         68 YMCQVNTDPM----KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGE----LI  133 (163)
Q Consensus        68 Y~C~~~~~~~----~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~----~~  133 (163)
                      |.|.+.+...    ....+.|.|..    +|.+...+.  ...+.+|+.+.|.|.+.+. |.| .+.|++++..    ..
T Consensus        96 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~  173 (220)
T 1pz5_B           96 YYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVP--GCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTV  173 (220)
T ss_dssp             EEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECC--CSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEC
T ss_pred             EEEEEecCCcccceECCCEEEEEccCCCCCCeEEEccc--ccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEc
Confidence            9999976531    11345677763    333333221  1234679999999999986 888 9999998863    11


Q ss_pred             e---cCCceEEeceEEEEcchhhh
Q psy16425        134 A---QGNGQEDFPFFKRTKKKKKK  154 (163)
Q Consensus       134 ~---~~~~~~~~~~l~i~~v~~~~  154 (163)
                      .   ........+.|.|..+..++
T Consensus       174 ~~~~~~~~~~~~s~L~i~~~~~~~  197 (220)
T 1pz5_B          174 SSVLQSGFYSLSSLVTVPSSTWPS  197 (220)
T ss_dssp             CCEEETTEEEEEEEEEECGGGTTT
T ss_pred             CCcccCCeEEEEEEEEEcchhcCC
Confidence            0   01111234567787776543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.68  E-value=7.8e-16  Score=102.73  Aligned_cols=127  Identities=16%  Similarity=0.256  Sum_probs=84.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|..   |.+.|.|+| ++..+...     ..           .+.+|.|.+++.+|+|.|+|.+.+..  +...
T Consensus        19 ~~v~L~C~~---p~~~i~W~k-~g~~l~~~-----~~-----------~~~~L~i~~v~~~DsG~Y~C~~~~~~--s~~~   76 (204)
T 1sy6_A           19 GSVLLTCDA---EAKNITWFK-DGKMIGFL-----TE-----------DKKKWNLGSNAKDPRGMYQCKGSQNK--SKPL   76 (204)
T ss_dssp             SEEEEEECS---CSSEEEEEE-TTEEEEEE-----ES-----------SCCCEEEEEGGGCCEEEEEEESSSSC--CCCE
T ss_pred             CeEEEEEcC---CCCEEEEEE-CCEECCCC-----CC-----------CCCeEEeCCCCcCCCEEEEEEecCCC--CeeE
Confidence            357888877   788999999 66555321     00           11279999999999999999974332  2223


Q ss_pred             EEEEEc-------------------------------CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeE
Q psy16425         83 YLEVVV-------------------------------PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGE  131 (163)
Q Consensus        83 ~l~v~~-------------------------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~  131 (163)
                      .+.+..                               ++.+...   +.....+|+++.|.|.  +.|.|.+.|++++..
T Consensus        77 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~  151 (204)
T 1sy6_A           77 QVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT---PYKVSISGTTVILTCP--QYPGSEILWQHNDKN  151 (204)
T ss_dssp             EEEEEC------------------------------------CC---CCEEEEETTEEEEECS--CCCSSCEEEEETTEE
T ss_pred             EEEEEEeccccccccccccccccccccccccccccccccceecC---CceeeecCCcEEEEcC--CCCCCceEEEECCEE
Confidence            333330                               1111111   1222338999999999  789999999999988


Q ss_pred             EEecCC---ceEEeceEEEEcc-hhhhHh
Q psy16425        132 LIAQGN---GQEDFPFFKRTKK-KKKKKK  156 (163)
Q Consensus       132 ~~~~~~---~~~~~~~l~i~~v-~~~~~~  156 (163)
                      +.....   ....++.|.|.+| +.+|.+
T Consensus       152 l~~~~~~~~~~~~~~~L~I~~v~~~~D~G  180 (204)
T 1sy6_A          152 IGGDEDDKNIGSDEDHLSLKEFSELEQSG  180 (204)
T ss_dssp             ESCCTTCTTEEEETTEEEETTCCHHHHCE
T ss_pred             CCCccCCceEecCCCEEEEeeCCccccCE
Confidence            754321   1235789999999 999876

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.68  E-value=6.1e-17  Score=115.31  Aligned_cols=144  Identities=11%  Similarity=0.128  Sum_probs=100.9

Q ss_pred             ceeEEEeeee-------ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEM-------LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~-------~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...       +.|.+.|.|++. +..+....    ....|+... .+    +|.|.+++.+|+|.|+|.+.+.
T Consensus        34 ~~v~L~C~~~~~~~~~~~~p~~~v~W~k~-~~~~~~~~----~~~~~~~~~-~~----~L~i~~v~~~D~G~Y~C~~~n~  103 (339)
T 3o4o_C           34 EPVALRCPQVPYWLWASVSPRINLTWHKN-DSARTVPG----EEETRMWAQ-DG----ALWLLPALQEDSGTYVCTTRNA  103 (339)
T ss_dssp             BCCEEECTTSCSSCCSTTSSCCBCCCEES-SCCSCCSC----CSSSCEEEE-TT----EEEESSBCTTCCEEEECCEEET
T ss_pred             ccEEEEeccccccccccCCCCceEEEEEC-CCCcccCc----cccccEEee-CC----eEEECCCCcccCEEEEEEEECC
Confidence            3578888887       889999999994 44321100    113344432 22    8999999999999999999765


Q ss_pred             -CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeE-----eccCCCCeEEEEECCeEEEecCCce-E--EeceEE
Q psy16425         76 -PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCA-----ASGSPKPNITWRREGGELIAQGNGQ-E--DFPFFK  146 (163)
Q Consensus        76 -~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~p~v~W~~~~~~~~~~~~~~-~--~~~~l~  146 (163)
                       +.....+.|.|...+............+.+|+.+.|.|.     +.+.|.|.+.|++++..+....... .  +.+.|.
T Consensus       104 ~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~  183 (339)
T 3o4o_C          104 SYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLL  183 (339)
T ss_dssp             TEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEE
T ss_pred             cceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEE
Confidence             334455677777766543211112456889999999999     7889999999999998775442222 1  225799


Q ss_pred             EEcchhhhHh
Q psy16425        147 RTKKKKKKKK  156 (163)
Q Consensus       147 i~~v~~~~~~  156 (163)
                      |.+++.+|.+
T Consensus       184 i~~v~~~d~G  193 (339)
T 3o4o_C          184 VHDVALEDAG  193 (339)
T ss_dssp             ESSCCGGGCE
T ss_pred             EcccCHhhCe
Confidence            9999998875

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.68  E-value=1.2e-16  Score=106.79  Aligned_cols=151  Identities=16%  Similarity=0.227  Sum_probs=95.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEEeee----eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-C
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTILTIQ----THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-P   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~   76 (163)
                      .++.|.|...+.|.+.|.||+.+ +..+....    ........|+..... .+.++|.|.+++.+|+|.|+|.+.+. .
T Consensus        15 ~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~n~~~   93 (212)
T 1nfd_E           15 ETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS-GTTATLTISGAQPEDEAAYYCLSSYGDN   93 (212)
T ss_dssp             SCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE-TTEEEEEETTCCGGGCSEEEEEEEETTT
T ss_pred             CcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEee-CCEEEEEECcCCcccCEEEEEEEEcccC
Confidence            46788898888888899999853 22221100    000012356665542 34668999999999999999999752 2


Q ss_pred             C---ceEeEEEEEE----cCCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCeEEEecCCc---------
Q psy16425         77 M---KSQVGYLEVV----VPPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGGELIAQGNG---------  138 (163)
Q Consensus        77 ~---~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~~~~~~---------  138 (163)
                      .   ......|.|.    .+|.+...+.  ...+.+|+.+.|.|.+.+. |+ |.+.|++++..+......         
T Consensus        94 ~~~~~~~~~~l~V~~~~~~~p~v~~~~~--~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~  171 (212)
T 1nfd_E           94 NDLVFGSGTQLTVLRGPKSSPKVTVFPP--SPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQN  171 (212)
T ss_dssp             TEEEECCCEEEEEECCCCBCCEEECCCC--CHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSC
T ss_pred             cccccCCceEEEEccCCCCCCEEEeeCC--chHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCC
Confidence            1   1223456664    2344433222  2223578999999999886 55 799999999887543211         


Q ss_pred             eEEeceEEEEcchhhhHh
Q psy16425        139 QEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       139 ~~~~~~l~i~~v~~~~~~  156 (163)
                      ....+.|.|.++..+|++
T Consensus       172 ~~~~s~L~i~~~~~~d~G  189 (212)
T 1nfd_E          172 YMTSSYLSLTADQWKSHN  189 (212)
T ss_dssp             EEEEEBCCEEHHHHHTCS
T ss_pred             ceEEEEEEEchhhcCCCC
Confidence            112345788888888765

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.68  E-value=7.3e-16  Score=104.79  Aligned_cols=152  Identities=19%  Similarity=0.207  Sum_probs=98.0

Q ss_pred             ceeEEEeeeeccC----CCEEEEEEcC-CceE--Eee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMA----ESTVAWLRVD-TQTI--LTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~----~~~i~W~k~~-~~~~--~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .++.|.|...+.|    .+.|.|++.+ +...  ...  .........|+..... .+.++|.|.+++.+|+|.|.|.+.
T Consensus        17 ~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~   95 (240)
T 1moe_A           17 QRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS-RTDFTLIIDPVEADDVATYYCQQT   95 (240)
T ss_dssp             SCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEec-CCeEEEEEcCCChhhCEEEEEEEc
Confidence            4688999988887    8899999953 2211  110  0000112457776552 356789999999999999999996


Q ss_pred             eCCC--ceEeEEEEEEcCC-----cccccCCCCcEEEeCCCcEEEEeEeccCCC--CeEEEEEC--CeEEE-----e---
Q psy16425         74 TDPM--KSQVGYLEVVVPP-----DILDYPTSTDMVIREGSNVTLKCAASGSPK--PNITWRRE--GGELI-----A---  134 (163)
Q Consensus        74 ~~~~--~~~~~~l~v~~~p-----~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~--~~~~~-----~---  134 (163)
                      +...  ......|.|..++     .+.... .....+.+|+++.|.|.+.+.|.  +.+.|+++  +..+.     .   
T Consensus        96 n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~  174 (240)
T 1moe_A           96 NEDPYTFGGGTKLEIKGGGSGGGGEVQLQQ-SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPAN  174 (240)
T ss_dssp             SSSSCCBCCCEEEEECCCSCCCCCCCEEEE-CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cCCceeecCCEEEEEecCCCCCCceEEEeC-CCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccC
Confidence            6522  3345567776643     121111 13567889999999999998874  58999996  22211     0   


Q ss_pred             ---------cCCceEE------eceEEEEcchhhhHh
Q psy16425        135 ---------QGNGQED------FPFFKRTKKKKKKKK  156 (163)
Q Consensus       135 ---------~~~~~~~------~~~l~i~~v~~~~~~  156 (163)
                               ..+....      ...|+|.+++.+|++
T Consensus       175 ~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G  211 (240)
T 1moe_A          175 GNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTA  211 (240)
T ss_dssp             TEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CccccCccccccEEEEEcccCCEEEEEECcCCHHHCE
Confidence                     1111111      146999999999875

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.68  E-value=2.5e-15  Score=114.07  Aligned_cols=153  Identities=16%  Similarity=0.169  Sum_probs=104.1

Q ss_pred             ceeEEEeeeeccCCC---EEEEEEcCCc----eEEeee-eeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAES---TVAWLRVDTQ----TILTIQ-THVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~---~i~W~k~~~~----~~~~~~-~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|...+.+.+   .|.|++.+..    .+.... .......+|+.+... ..+.++|.|.+++.+|+|.|+|.+.
T Consensus        16 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~   95 (585)
T 2ocw_A           16 NSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLG   95 (585)
T ss_pred             CcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCEEEEEEcc
Confidence            467888888777544   8999995431    111111 111123457776654 3456789999999999999999996


Q ss_pred             eC-CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCCeEEEEECCeEEE----e---------cCCc
Q psy16425         74 TD-PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKPNITWRREGGELI----A---------QGNG  138 (163)
Q Consensus        74 ~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~~~----~---------~~~~  138 (163)
                      +. +..+..+.|.|..+|.+...+  ....+.+|+.+.|.|.+.+. |.+.+.|++++....    .         ..+.
T Consensus        96 n~~~~~~~~~~l~V~~~p~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~  173 (585)
T 2ocw_A           96 INSRGLSFDVSLEVSQGPGLLNDT--KVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRI  173 (585)
T ss_pred             cCCCCceEEEEEEEecCccccCCC--ccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcE
Confidence            55 455666788888888776543  46678899999999999865 457799999876421    1         1111


Q ss_pred             eE--Eec-----eEEEEcchhhhHhh
Q psy16425        139 QE--DFP-----FFKRTKKKKKKKKK  157 (163)
Q Consensus       139 ~~--~~~-----~l~i~~v~~~~~~~  157 (163)
                      ..  .+.     .|.|.+++.+|.+.
T Consensus       174 ~~~~~~~~~~~~~L~I~~v~~~D~G~  199 (585)
T 2ocw_A          174 RLDIQGTGQLLFSVVINQLRLSDAGQ  199 (585)
T ss_pred             EEEeccCCCcEEEEEEccCChhHCeE
Confidence            11  121     79999999998763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.68  E-value=2.9e-17  Score=117.73  Aligned_cols=136  Identities=12%  Similarity=0.135  Sum_probs=97.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCe-EEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRG-WYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~~~-~~~~~   80 (163)
                      ..+.+.|...+.|.+.|.|++.++......        .+.    ....+.+|.|.+++.+|+| .|+|.+.+. +....
T Consensus       174 ~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~--------~~~----~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~  241 (347)
T 2ifg_A          174 DDVLLRCQVEGRGLEQAGWILTELEQSATV--------MKS----GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV  241 (347)
T ss_dssp             CCEEEEEEEECSSCCCCCEEESCCCSSEEE--------CCC----CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCE
T ss_pred             CcEEEEEEEecCCCCEEEEEcCCceeeccc--------ccc----eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEE
Confidence            368889999999999999999544322111        000    1123458999999999999 999999766 33344


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-----------EEeceEEEEc
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-----------EDFPFFKRTK  149 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-----------~~~~~l~i~~  149 (163)
                      .+.+.|..+|.+ .     .....+|+.+.|.|.+.|.|.|.+.|++++..+.......           ...+.|+|.+
T Consensus       242 ~~~l~V~~~P~i-~-----~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~  315 (347)
T 2ifg_A          242 SVQVNVSFPASV-Q-----LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ  315 (347)
T ss_dssp             EECCCCBEEEEE-E-----ECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESS
T ss_pred             EEEEEEcCCCee-e-----eccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECC
Confidence            555666666654 1     1123568999999999999999999999998876443322           1356799999


Q ss_pred             chhhhHh
Q psy16425        150 KKKKKKK  156 (163)
Q Consensus       150 v~~~~~~  156 (163)
                      ++.+|++
T Consensus       316 v~~~d~G  322 (347)
T 2ifg_A          316 PTHVNNG  322 (347)
T ss_dssp             CCGGGCE
T ss_pred             CCcccCc
Confidence            9999875

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.68  E-value=2.8e-16  Score=107.78  Aligned_cols=151  Identities=18%  Similarity=0.201  Sum_probs=94.8

Q ss_pred             ceeEEEeeeeccC-----CCEEEEEEcC-CceEEe--e-e-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMA-----ESTVAWLRVD-TQTILT--I-Q-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~-----~~~i~W~k~~-~~~~~~--~-~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .++.|.|...+.+     .+.|.|++.+ +..+..  . . ........|+..... .+.++|.|.+++.+|+|.|.|.+
T Consensus        54 ~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a  132 (254)
T 2c1o_A           54 QPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGS-GTDFTLKISRVEAEDLGIYYCVQ  132 (254)
T ss_dssp             SCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecC-CCEEEEEECcCCcccCEEEEEEE
Confidence            4688999988877     4899999853 222110  0 0 000112356666542 34668999999999999999999


Q ss_pred             EeCCCc--eEeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEecc-CCC-CeEEEEECCeEEEec-C--------
Q psy16425         73 NTDPMK--SQVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASG-SPK-PNITWRREGGELIAQ-G--------  136 (163)
Q Consensus        73 ~~~~~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~~~-~--------  136 (163)
                      .+....  .....+.|..   +|.+...+..  ....+|+.+.|.|.+.+ .|+ +.+.|++++..+... .        
T Consensus       133 ~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~  210 (254)
T 2c1o_A          133 GSHFPPTFGAGTKLELKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDS  210 (254)
T ss_dssp             CSSSSCEEBCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCT
T ss_pred             EcCcceEecCCEEEEECCCCCCCeeEeecCC--hhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccC
Confidence            665321  2223566653   3444432221  11235789999999988 444 469999999876433 0        


Q ss_pred             --CceEEeceEEEEcchhhhHh
Q psy16425        137 --NGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       137 --~~~~~~~~l~i~~v~~~~~~  156 (163)
                        ........|.|.++..+|.+
T Consensus       211 ~~g~~~~~~~L~i~~~~~~d~G  232 (254)
T 2c1o_A          211 KDSTYSMSSTLTLTKDEYERHN  232 (254)
T ss_dssp             TTCCEEEEEEEEEEHHHHHTCC
T ss_pred             CCCcEEEEEEEEeccccccCCC
Confidence              00112457999999888865

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.68  E-value=1.1e-15  Score=117.29  Aligned_cols=132  Identities=17%  Similarity=0.278  Sum_probs=95.3

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceEe
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQV   81 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~~   81 (163)
                      .+.|.|...+ |.+.|.|++ ++..+.        ...++.....   ...|.|.+++.+|+|.|+|.+.+...  .+..
T Consensus       128 ~v~l~C~~~~-p~~~v~W~~-~g~~l~--------~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~  194 (642)
T 1e07_A          128 AVAFTCEPET-QDATYLWWV-NNQSLP--------VSPRLQLSNG---NRTLTLFNVTRNDTASYKCETQNPVSARRSDS  194 (642)
T ss_pred             cEEEEEECCC-CCeeEEEEE-CCeECC--------CCCceEEcCC---CCEEEEeCCCcccCeeEEEEEecCCCCcccce
Confidence            3778888877 899999999 555442        2334443322   23899999999999999999976532  3445


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|...|....... ....+.+|+.+.|.|.+.++|.|.+.|++++..+..       +..|.|.+++.+|.+
T Consensus       195 ~~l~V~~~p~~~~~~~-~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~-------~~~L~i~~~~~~d~G  261 (642)
T 1e07_A          195 VILNVLYGPDAPTISP-LNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS-------TQELFIPNITVNNSG  261 (642)
T ss_pred             EEEEEEeCCCCcEEec-CCcccccCCEEEEEEEcCCCCCcEEEEEECCeEccc-------CCceEEecccccCCe
Confidence            6778876665433222 245678899999999999999999999999987632       245777777777765

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.67  E-value=4.2e-16  Score=106.93  Aligned_cols=151  Identities=19%  Similarity=0.233  Sum_probs=94.3

Q ss_pred             ceeEEEeeeeccC-----CCEEEEEEcC-CceE--Eeee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMA-----ESTVAWLRVD-TQTI--LTIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~-----~~~i~W~k~~-~~~~--~~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .++.|.|...+.+     .+.|.||+.+ +...  ....  .......+|+.... ..++++|.|.+++.+|+|.|.|.+
T Consensus        50 ~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~  128 (252)
T 3bkj_L           50 EQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG-SGTDFTLRISRVEAEDLGVYYCFQ  128 (252)
T ss_dssp             SCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc-cCCEEEEEECCCCcccCEEEEEEE
Confidence            4688999988777     6899999954 2211  1100  00011245666654 235678999999999999999999


Q ss_pred             EeCCCc--eEeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEEec----CCce--
Q psy16425         73 NTDPMK--SQVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELIAQ----GNGQ--  139 (163)
Q Consensus        73 ~~~~~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~~----~~~~--  139 (163)
                      .+....  .....|.|..   +|.+...+..  ....+|+.+.|.|.+.+ .|++ .+.|++++..+...    ....  
T Consensus       129 ~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~  206 (252)
T 3bkj_L          129 ASLVPLTFGAGTKLELKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDS  206 (252)
T ss_dssp             CSBSSCEECCCEEEEECCCCBCCEEEEECCC--HHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCT
T ss_pred             EcCCccEECCCEEEEEeCCCcCcEEEEeCCC--hhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccC
Confidence            655321  2234566653   3444332221  11336889999999988 4554 79999999876432    0000  


Q ss_pred             -----EEeceEEEEcchhhhHh
Q psy16425        140 -----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 -----~~~~~l~i~~v~~~~~~  156 (163)
                           .....|.|..+..+|++
T Consensus       207 ~~g~~~~~s~L~i~~~~~~d~g  228 (252)
T 3bkj_L          207 KDSTYSMSSTLTLTKDEYERHN  228 (252)
T ss_dssp             TTCCEEEEEEEEEEHHHHHHCC
T ss_pred             CCCCEEEEEEEEEcchhccCCC
Confidence                 12245889888887765

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.67  E-value=1e-15  Score=106.05  Aligned_cols=129  Identities=19%  Similarity=0.371  Sum_probs=82.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceE---Eeee-eeEEec---CC-eEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTI---LTIQ-THVITK---NH-RIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~---~~~~-~~~~~~---~~-r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .++.|.|.... +.+.|.||+.. +...   .... ......   .+ |+.+.....++++|.|.+++.+|+|.|.|.+.
T Consensus        43 ~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~  121 (270)
T 3qib_D           43 QKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASS  121 (270)
T ss_dssp             SCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEe
Confidence            46788887654 77899999843 2111   1111 000011   11 77777655567899999999999999999996


Q ss_pred             eCC-----CceEeEEEEEEc------CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEE
Q psy16425         74 TDP-----MKSQVGYLEVVV------PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELI  133 (163)
Q Consensus        74 ~~~-----~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~  133 (163)
                      +..     .......|.|..      +|.+...+. ....+.+|+.+.|.|.+.+ .|.| .+.|+++|..+.
T Consensus       122 ~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~  193 (270)
T 3qib_D          122 LNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  193 (270)
T ss_dssp             SCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEEC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             cCCCccceEECCcEEEEEccccccccCCceEEECC-CccccccCCceEEEEEecceeCCCeEEEEEECCEECC
Confidence            431     122334667765      333222111 1222345899999999988 6767 799999998874

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.67  E-value=1e-15  Score=105.91  Aligned_cols=129  Identities=19%  Similarity=0.312  Sum_probs=84.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceE---Eee-eeeEEec---C-CeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTI---LTI-QTHVITK---N-HRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~---~~~-~~~~~~~---~-~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .++.|.|... .+.+.|.||+.. +...   ... .......   . +|+.+.....++++|.|.+++.+|+|.|.|.+.
T Consensus        42 ~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~  120 (268)
T 3pl6_D           42 KYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAVYLCATS  120 (268)
T ss_dssp             CCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCEEEEEEEe
Confidence            4678888765 678899999942 1111   111 1111111   1 788877765567899999999999999999997


Q ss_pred             eC---CCceEeEEEEEEc------CCcccccCCCCcEEEeCCCcEEEEeEeccCCC-C-eEEEEECCeEEE
Q psy16425         74 TD---PMKSQVGYLEVVV------PPDILDYPTSTDMVIREGSNVTLKCAASGSPK-P-NITWRREGGELI  133 (163)
Q Consensus        74 ~~---~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p-~v~W~~~~~~~~  133 (163)
                      +.   ........|.|..      +|.+..... ....+.+|+.+.|.|.+.+.|+ | .+.|+++|..+.
T Consensus       121 ~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~  190 (268)
T 3pl6_D          121 ALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  190 (268)
T ss_dssp             SSSSSCEECCCEEEEEESCGGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEEC
T ss_pred             cCCCceeeCCcEEEEEecCcccccCCceEEeCC-CcccccCCCceEEEEEECcccCCCeEEEEEECCEECC
Confidence            53   1223344666665      333322211 1223446899999999998554 4 899999998874

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.67  E-value=2.4e-15  Score=103.14  Aligned_cols=126  Identities=18%  Similarity=0.199  Sum_probs=95.1

Q ss_pred             ceeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          3 ARMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ..+.|.|...+.|.+ .+.|++ ++..+..        .           ...|.|.+++.+|+|.|+|.+.+. ..+..
T Consensus        17 ~~v~l~C~~~~~~~~~~~~W~~-~g~~~~~--------~-----------~~~l~i~~~~~~d~G~Y~C~~~~~-~~s~~   75 (262)
T 3rjd_A           17 ETVTLHCEVLHLPGSSSTQWFL-NGTATQT--------S-----------TPSYRITSASVNDSGEYRCQRGLS-GRSDP   75 (262)
T ss_dssp             CCEEEEEECSSCCCTTCEEEEE-TTEECSC--------C-----------SSEEEESSCCGGGCEEEEEEESSS-CCCCC
T ss_pred             CeEEEEEECCCCCCCceEEEEE-CCEEeec--------c-----------CCeEEEecCCcccCeEEEEEEecC-Ccccc
Confidence            368889998888887 999999 5554311        1           127999999999999999999543 34456


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      +.+.|..++.....+   ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+...    ..+..|.|.+++.+|.+
T Consensus        76 ~~l~v~~~~~~~~~~---~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~----~~~~~l~i~~~~~~d~G  144 (262)
T 3rjd_A           76 IQLEIHRGWLLLQVS---SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF----HWNSNLTILKTNISHNG  144 (262)
T ss_dssp             EEEEEECSSEEEEES---CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE----EECCCEEESSCCGGGCE
T ss_pred             EEEEEeccceEecCC---CeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc----CCCCeEEEEECChhhCE
Confidence            677777665443322   4467889999999999 67888999999999887433    23567899999888865

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.67  E-value=1.6e-15  Score=101.31  Aligned_cols=150  Identities=17%  Similarity=0.213  Sum_probs=93.6

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceEE---eee-----eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTIL---TIQ-----THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~~---~~~-----~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .++.|.|...+.+  .+.|.|++.+ +....   ...     .......+|+.+.... .++++|.|.+++.+|+|.|.|
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   95 (210)
T 3d9a_H           16 QTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYC   95 (210)
T ss_dssp             SCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcccCEEEEE
Confidence            4688999887764  4899999853 22211   100     0001134677776543 246799999999999999999


Q ss_pred             EEEeCCCceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEEE--ecCCc----
Q psy16425         71 QVNTDPMKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGELI--AQGNG----  138 (163)
Q Consensus        71 ~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~--~~~~~----  138 (163)
                      .+.+.........|.|..    +|.+...+.  ...+.+|+.+.|.|.+.+. |.| .+.|++++..+.  .....    
T Consensus        96 ~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~  173 (210)
T 3d9a_H           96 ANWDGDYWGQGTLVTVSAAKTTPPSVYPLAP--GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD  173 (210)
T ss_dssp             EETTSSCBCCCEEEEECCCCCBCCEEEEECC--TTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETT
T ss_pred             EEecCcccccceEEEeccCCCCCCEEEEecC--CcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCC
Confidence            996543222335666653    333333221  1224679999999999986 888 999999987531  11111    


Q ss_pred             -eEEeceEEEEcchhhh
Q psy16425        139 -QEDFPFFKRTKKKKKK  154 (163)
Q Consensus       139 -~~~~~~l~i~~v~~~~  154 (163)
                       ......|.|..+..+|
T Consensus       174 ~~~~~s~L~i~~~~~~~  190 (210)
T 3d9a_H          174 LYTLSSSVTVPSSTWPS  190 (210)
T ss_dssp             EEEEEEEEEEEGGGTTT
T ss_pred             cEEEEEEEEEcHHHcCC
Confidence             1123467888777644

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.67  E-value=8.3e-16  Score=106.91  Aligned_cols=152  Identities=18%  Similarity=0.221  Sum_probs=95.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c---eEEeee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q---TILTIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~---~~~~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      .++.|.|...+.|.+.|.||+.+. .   .+.... ........|+..... .+.++|.|.+++.+|+|.|.|.+.+...
T Consensus        28 ~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~C~~~n~~~  106 (276)
T 3auv_A           28 DRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-GTDFTLTISSLQPEDFATYYCQQHYTTP  106 (276)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEecc-CCeEEEEEccCChhhCEEEEEEEecCCc
Confidence            468899999888899999999542 1   111110 000112457766542 3466899999999999999999966421


Q ss_pred             --ceEeEEEEEEcCCc-------------ccccCCCCcEEEeCCCcEEEEeEeccCC--CCeEEEEECC--eEE--Ee--
Q psy16425         78 --KSQVGYLEVVVPPD-------------ILDYPTSTDMVIREGSNVTLKCAASGSP--KPNITWRREG--GEL--IA--  134 (163)
Q Consensus        78 --~~~~~~l~v~~~p~-------------~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~~--~~~--~~--  134 (163)
                        ......|.|...|.             +....+ ....+.+|+++.|.|.+.+.|  .+.+.|++++  ..+  ..  
T Consensus       107 ~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p-~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~  185 (276)
T 3auv_A          107 PTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVES-GGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGI  185 (276)
T ss_dssp             CCCCCCEEEEC-----------------CCEEEEE-CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEE
T ss_pred             ccccCCEEEEEecCCCccccccccccCcceEEECC-CceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEE
Confidence              23335666655431             211111 356788999999999999876  5899999963  211  10  


Q ss_pred             -------------cCCceEE------eceEEEEcchhhhHh
Q psy16425        135 -------------QGNGQED------FPFFKRTKKKKKKKK  156 (163)
Q Consensus       135 -------------~~~~~~~------~~~l~i~~v~~~~~~  156 (163)
                                   ..+....      ...|+|.+++.+|++
T Consensus       186 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG  226 (276)
T 3auv_A          186 TPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTA  226 (276)
T ss_dssp             CGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             eccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCE
Confidence                         1111111      137999999999875

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.67  E-value=3.8e-16  Score=112.34  Aligned_cols=140  Identities=16%  Similarity=0.220  Sum_probs=95.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeE-----EecCCeEEEEeC--CCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHV-----ITKNHRIGVTHS--ETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~-----~~~~~r~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|...+.|.+.|.|++.+...+.......     .....|+.+...  ..++.+|.|.+++.+|+|.|+|.+.+.
T Consensus        10 ~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   89 (363)
T 1wio_A           10 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQ   89 (363)
T ss_dssp             SCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEEEEETTE
T ss_pred             CeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEEEEEEEC
Confidence            4688999988899999999995433232111100     012345544321  113447999999999999999999544


Q ss_pred             CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhH
Q psy16425         76 PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKK  155 (163)
Q Consensus        76 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~  155 (163)
                         ...+.|.|..   +...+   ...+.+|+++.|.|.+.+.|.|.+.|++++..+.      .....|.|.+++.+|+
T Consensus        90 ---~~~~~l~V~~---~~~~~---~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~------~~~~~L~i~~v~~~d~  154 (363)
T 1wio_A           90 ---KEEVQLLVFG---LTANS---DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------QGGKTLSVSQLELQDS  154 (363)
T ss_dssp             ---EEEEEEEEEE---EEESS---CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEE------EESSEEEECSBCGGGC
T ss_pred             ---CCcEEEEEEe---CCCCC---ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc------ccceEEEEeeCChhcC
Confidence               2345555553   22222   2246789999999999999999999999986642      3557799999999987


Q ss_pred             hh
Q psy16425        156 KK  157 (163)
Q Consensus       156 ~~  157 (163)
                      +.
T Consensus       155 G~  156 (363)
T 1wio_A          155 GT  156 (363)
T ss_dssp             EE
T ss_pred             CE
Confidence            63

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.67  E-value=4.6e-16  Score=104.28  Aligned_cols=151  Identities=14%  Similarity=0.192  Sum_probs=91.5

Q ss_pred             ceeEEEee-eecc-CCCEEEEEEcCC-ceEE--ee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIG-EMLM-AESTVAWLRVDT-QTIL--TI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~-~~~~-~~~~i~W~k~~~-~~~~--~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|. ..+. +.+.|.|++.+. ....  ..  .........|+.... ..++++|.|.+++.+|+|.|.|.+.+.
T Consensus        16 ~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~   94 (216)
T 2xzc_L           16 QKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK-SGTSATLGITGLQTGDEADYYCGTWDS   94 (216)
T ss_dssp             CCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             CeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec-cCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            46888888 3433 368999999542 2111  00  000011235666554 234678999999999999999999765


Q ss_pred             CC---ceEeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEEec----CCce----
Q psy16425         76 PM---KSQVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELIAQ----GNGQ----  139 (163)
Q Consensus        76 ~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~~----~~~~----  139 (163)
                      ..   ......|.|..   +|.+...+..  ....+|+.+.|.|.+.+ .|+| .+.|++++..+...    ....    
T Consensus        95 ~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~  172 (216)
T 2xzc_L           95 SLNPVFGGGTKLEIKRTVAAPSVFIFPPS--DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKD  172 (216)
T ss_dssp             TSCEEEBCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTT
T ss_pred             CCcceECCCEEEEEcCCCCCCceEEeCCC--hhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCC
Confidence            43   12234566642   3444332221  11235889999999987 5665 89999999876433    0000    


Q ss_pred             ---EEeceEEEEcchhhhHh
Q psy16425        140 ---EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 ---~~~~~l~i~~v~~~~~~  156 (163)
                         .....|.|..+..+|++
T Consensus       173 g~~~~~s~L~i~~~~~~d~g  192 (216)
T 2xzc_L          173 STYSLSSTLTLSKADYEKHK  192 (216)
T ss_dssp             CCEEEEEEEEEEHHHHTTCC
T ss_pred             CCEEEEEEEEECHHHhCCCC
Confidence               12236888888877754

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.67  E-value=8.6e-16  Score=108.88  Aligned_cols=154  Identities=12%  Similarity=0.211  Sum_probs=100.3

Q ss_pred             ceeEEEeeeecc----CCCEEEEEEcCCceEEeee--------eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEE
Q psy16425          3 ARMLIEIGEMLM----AESTVAWLRVDTQTILTIQ--------THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         3 ~~~~~~~~~~~~----~~~~i~W~k~~~~~~~~~~--------~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .++.|.|...+.    +.+.|.|++.+........        .......+|+.+.....++.+|.|.+++.+|+|.|+|
T Consensus        30 ~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  109 (331)
T 3u83_A           30 TDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYIC  109 (331)
T ss_dssp             CCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSCCGGGCEEEEE
T ss_pred             CCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcccCcccCcEEEE
Confidence            467888887665    6678999994322111100        0011235677766444456689999999999999999


Q ss_pred             EEEeC--CCceEeEEEEEEcCCcccccCCCCcEEEeCC---CcEEEEeE-eccCCCCeEEEEECCe--EEEe----cCCc
Q psy16425         71 QVNTD--PMKSQVGYLEVVVPPDILDYPTSTDMVIREG---SNVTLKCA-ASGSPKPNITWRREGG--ELIA----QGNG  138 (163)
Q Consensus        71 ~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g---~~~~l~C~-~~~~p~p~v~W~~~~~--~~~~----~~~~  138 (163)
                      .+.+.  +.....+.|.|..+|.+..........+.+|   +.+.|.|. +.+.|.|.+.|++++.  ....    ....
T Consensus       110 ~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  189 (331)
T 3u83_A          110 EFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGT  189 (331)
T ss_dssp             EEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSC
T ss_pred             EEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCc
Confidence            96433  3445567788888887644333346678888   77999998 7799999999998532  2111    1111


Q ss_pred             eEEeceEEEEcchhhhHh
Q psy16425        139 QEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       139 ~~~~~~l~i~~v~~~~~~  156 (163)
                      ......|.|..+..+|.+
T Consensus       190 ~~~~~~L~i~~~~~~d~G  207 (331)
T 3u83_A          190 VTVISRYRLVPSREAHQQ  207 (331)
T ss_dssp             EEEEEEEEECCCGGGTTC
T ss_pred             EEEEEEEEEEeccccCCC
Confidence            123356777777887765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.67  E-value=9.2e-16  Score=103.00  Aligned_cols=127  Identities=19%  Similarity=0.301  Sum_probs=85.3

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceEEeee-------ee--EEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTILTIQ-------TH--VITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~~~~~-------~~--~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.+  .+.|.||+.+ +..+....       ..  .....+|+.+.... .++++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   95 (219)
T 1c1e_H           16 ETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNEDMATYF   95 (219)
T ss_dssp             CCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcccCEEEE
Confidence            4688889887654  7899999963 33221110       00  01234677776542 34679999999999999999


Q ss_pred             EEEEeCCC-----ceEeEEEEEEcC----CcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeE
Q psy16425         70 CQVNTDPM-----KSQVGYLEVVVP----PDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGE  131 (163)
Q Consensus        70 C~~~~~~~-----~~~~~~l~v~~~----p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~  131 (163)
                      |.+.+...     ......|.|...    |.+...+.  ...+.+|+.+.|.|.+.+ .|.| .+.|++++..
T Consensus        96 C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  166 (219)
T 1c1e_H           96 CARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAP--GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  166 (219)
T ss_dssp             EEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECC--CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             EEEeccCcccceeecCceEEEEecCCCCCCeEEEecC--ccccccCCeEEEEEEcccccCCCeEEEEEeCCcc
Confidence            99976531     123456666653    33332221  123467999999999998 8999 9999999875

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.67  E-value=1.8e-15  Score=104.06  Aligned_cols=151  Identities=20%  Similarity=0.277  Sum_probs=97.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---EEee--eeeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---ILTI--QTHVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~~~~--~~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.+.+.|.||+... ..   +...  ........+|+.+.. .....++|.|.+++.+|+|.|.|.+.+.
T Consensus        19 ~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~   98 (256)
T 3tf7_C           19 ASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAK   98 (256)
T ss_dssp             SCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECT
T ss_pred             CeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecC
Confidence            468899999889999999998531 11   1111  111223456666642 2346779999999999999999999764


Q ss_pred             CC-----ceEeEEEEEEc--------------------CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECC-
Q psy16425         76 PM-----KSQVGYLEVVV--------------------PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG-  129 (163)
Q Consensus        76 ~~-----~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~-  129 (163)
                      ..     ......|.|..                    +|.+...+  ....+.+|+++.|.|.+.+. .|.+.|++.. 
T Consensus        99 ~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p--~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~  175 (256)
T 3tf7_C           99 GTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSP--RNKVTVTGENVTLSCRQTNS-HNYMYWYRQDT  175 (256)
T ss_dssp             TCTTCEEECCCEEEEEEC---------------------CCEEESC--SEEEEETTCCEEECEEECSC-CSEEEEEEECT
T ss_pred             CCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecC--CEEEEeCCCcEEEEEEcCCC-ceEEEEEEECC
Confidence            21     12234566654                    33344333  35667799999999999876 7799999832 


Q ss_pred             -eE--EEe-------------cCCce-----EEeceEEEEcchhhhHh
Q psy16425        130 -GE--LIA-------------QGNGQ-----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       130 -~~--~~~-------------~~~~~-----~~~~~l~i~~v~~~~~~  156 (163)
                       ..  ...             ..+..     .....|+|.+++.+|++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG  223 (256)
T 3tf7_C          176 GHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTS  223 (256)
T ss_dssp             TSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCE
T ss_pred             CCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCE
Confidence             11  111             01110     12347999999999875

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.66  E-value=4.5e-15  Score=101.01  Aligned_cols=129  Identities=18%  Similarity=0.299  Sum_probs=83.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---EEeee-ee---EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---ILTIQ-TH---VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~~~~~-~~---~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|...+ +.+.|.||+... ..   +.... ..   .....+|+.+.....++++|.|.+++.+|+|.|.|.+.+
T Consensus        18 ~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   96 (240)
T 3q5y_A           18 GRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSL   96 (240)
T ss_dssp             CCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEEES
T ss_pred             CcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEEEEEEEcc
Confidence            46788887764 788999999431 11   11111 11   112246888777666788999999999999999999962


Q ss_pred             --C--CCceEeEEEEEEc------CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEE
Q psy16425         75 --D--PMKSQVGYLEVVV------PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELI  133 (163)
Q Consensus        75 --~--~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~  133 (163)
                        .  ........+.|..      +|.+..... ....+.+|+.+.|.|.+.+ .|.| .+.|+++|..+.
T Consensus        97 ~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~-~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~  166 (240)
T 3q5y_A           97 RWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEP-SKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVH  166 (240)
T ss_dssp             STTBCCEECCCEEEEEESCGGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CCCcceEEcCCEEEEEeccccCCCCCeeEEeCC-chhhcccCCceEEEEEEeeEECCCeEEEEEECCEECc
Confidence              1  1223344566663      333322111 1223446899999999988 6666 799999998874

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.66  E-value=9.2e-15  Score=100.45  Aligned_cols=152  Identities=16%  Similarity=0.215  Sum_probs=97.5

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcC-CceE---Eeee------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVD-TQTI---LTIQ------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~-~~~~---~~~~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+  .+.+.|.||+.. +...   ....      .......+|+.+..+. .+.++|.|.+++.+|+|.|.
T Consensus        22 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~  101 (256)
T 3juy_B           22 ASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYY  101 (256)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCCcccCEEEE
Confidence            46888888776  478899999853 2111   1111      1111234678777543 45678999999999999999


Q ss_pred             EEEEeC-------------CCceEeEEEEEEcCC---------------cccccCCCCcEEEeCCCcEEEEeEeccCCC-
Q psy16425         70 CQVNTD-------------PMKSQVGYLEVVVPP---------------DILDYPTSTDMVIREGSNVTLKCAASGSPK-  120 (163)
Q Consensus        70 C~~~~~-------------~~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-  120 (163)
                      |.+.+.             ........|.|...+               .+...+  ....+.+|+++.|.|.+.+.|. 
T Consensus       102 C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~~~~~~~  179 (256)
T 3juy_B          102 CARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAP--GTLSLSPGERATFSCRSSHSIRS  179 (256)
T ss_dssp             EEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEEC--SEEEECTTSCEEEEEEESSCCTT
T ss_pred             EeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecC--CeEEEeCCCCEEEEEEECCCcCC
Confidence            999664             112234456666532               233322  3677889999999999998876 


Q ss_pred             CeEEEEEC--CeEEEe------------cCCceE----EeceEEEEcchhhhHh
Q psy16425        121 PNITWRRE--GGELIA------------QGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       121 p~v~W~~~--~~~~~~------------~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      +.+.|++.  +..+..            ..+...    ....|+|.+++.+|.+
T Consensus       180 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  233 (256)
T 3juy_B          180 RRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFA  233 (256)
T ss_dssp             CCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCE
Confidence            89999983  222110            111111    1235999999999875

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.66  E-value=2.3e-16  Score=112.13  Aligned_cols=137  Identities=18%  Similarity=0.223  Sum_probs=92.5

Q ss_pred             eeEEEeeeecc---------CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCe-EEEEEEE
Q psy16425          4 RMLIEIGEMLM---------AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRG-WYMCQVN   73 (163)
Q Consensus         4 ~~~~~~~~~~~---------~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~   73 (163)
                      .+.|.|...+.         |.+.|.|++. +..+..        ..+.  ...+    +|.|.+++.+|+| .|+|.+.
T Consensus        46 ~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~-~~~~~~--------~~~~--~~~~----~L~i~~v~~~D~Gs~Y~C~a~  110 (329)
T 3oq3_B           46 PFSAKCPPIEDSLLSHRYNDKDNVVNWEKI-GKTRRP--------LNRR--VKNG----DLWIANYTSNDSHRRYLCTVT  110 (329)
T ss_dssp             CEEECCHHHHCTTTGGGSCCTTCEEEEEEC-SSSCEE--------CSTT--EETT----EEEESSCCGGGGGCCEEEEEE
T ss_pred             eEEEEccCCCCccccccccCCCCeeEEEEC-CCCccc--------cCce--eecc----eEEEcCCChHhCCCcEEEEEE
Confidence            57788887663         6689999994 443321        1222  2222    8999999999999 9999997


Q ss_pred             eCC-CceEeEEEEEE-cCCcccccCCCCcEEEeCCCcEEEEeEeccCC-CCeEEEEECCeEEEecC-CceEEeceEEEEc
Q psy16425         74 TDP-MKSQVGYLEVV-VPPDILDYPTSTDMVIREGSNVTLKCAASGSP-KPNITWRREGGELIAQG-NGQEDFPFFKRTK  149 (163)
Q Consensus        74 ~~~-~~~~~~~l~v~-~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~p~v~W~~~~~~~~~~~-~~~~~~~~l~i~~  149 (163)
                      +.. .......+.+. .+|.+....  ....+.+|+.+.|.|.+.+.| .|.+.|++++..+.... .....++.|.|.+
T Consensus       111 n~~g~~~~~~~~~v~~~~p~~~~~~--~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~  188 (329)
T 3oq3_B          111 TKNGDCVQGIVRSHIRKPPSCIPET--YELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHN  188 (329)
T ss_dssp             CTTSCEEEEEEEEEECCCCSCEEEE--EETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECS
T ss_pred             eCCCceeeEEEEEEEcCCCcEeccc--cceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEee
Confidence            764 32222222333 344322211  122356799999999999999 89999999999874332 2223568999999


Q ss_pred             chhhhHhh
Q psy16425        150 KKKKKKKK  157 (163)
Q Consensus       150 v~~~~~~~  157 (163)
                      ++.+|++.
T Consensus       189 v~~~D~G~  196 (329)
T 3oq3_B          189 PELEDSGR  196 (329)
T ss_dssp             CCGGGCEE
T ss_pred             cChhhCEE
Confidence            99998763

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.66  E-value=6.2e-15  Score=99.55  Aligned_cols=150  Identities=15%  Similarity=0.218  Sum_probs=94.1

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceEEe---ee----eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTILT---IQ----THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~~~---~~----~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.+  .+.|.||+.+ +.....   ..    ....  ...+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   95 (225)
T 1op3_H           16 GSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYY   95 (225)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChhhCEEEE
Confidence            4688999887665  7899999864 222211   10    0011  134678776543 45679999999999999999


Q ss_pred             EEEEeCCC---------ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEEE-
Q psy16425         70 CQVNTDPM---------KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGELI-  133 (163)
Q Consensus        70 C~~~~~~~---------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~-  133 (163)
                      |.+.+...         ....+.|.|..    +|.+...++..  .+.+|+.+.|.|.+.+. |.| .+.|++++..+. 
T Consensus        96 C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~--~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~  173 (225)
T 1op3_H           96 CARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS--KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV  173 (225)
T ss_dssp             EEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT--TCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTC
T ss_pred             EEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc--cccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCe
Confidence            99976531         11345677765    23333222111  24579999999999875 777 999999886521 


Q ss_pred             -ecC------CceEEeceEEEEcchhhh
Q psy16425        134 -AQG------NGQEDFPFFKRTKKKKKK  154 (163)
Q Consensus       134 -~~~------~~~~~~~~l~i~~v~~~~  154 (163)
                       ...      ........|.|..+..+|
T Consensus       174 ~~~~~~~~~~g~~~~~s~L~i~~~~~~~  201 (225)
T 1op3_H          174 HTFPAVLQSSGLYSLSSVVTVPSSSLGT  201 (225)
T ss_dssp             EECCCEECTTSCEEEEEEEEEEGGGTTC
T ss_pred             EecCceeCCCCCEEEEEEEEEechhcCC
Confidence             110      111123457888777655

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.66  E-value=8.5e-16  Score=105.01  Aligned_cols=152  Identities=15%  Similarity=0.225  Sum_probs=94.5

Q ss_pred             ceeEEEeeeeccC-----CCEEEEEEcCC-ceEE--ee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMA-----ESTVAWLRVDT-QTIL--TI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~-----~~~i~W~k~~~-~~~~--~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|...+.+     .+.|.||+.+. ....  ..  ........+|+.... ..+.++|.|.+++.+|+|.|.|.+
T Consensus        17 ~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~   95 (247)
T 1svz_A           17 DQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG-SGTDFTLKISRVEAEDLGIYYCFQ   95 (247)
T ss_dssp             CCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc-CCCEEEEEECCCCHHHCEEEEEEE
Confidence            4688999988777     68999999542 2111  10  000001245776654 235678999999999999999999


Q ss_pred             EeCCC--ceEeEEEEEEcCC------------cccccCCCCcEEEeCCCcEEEEeEeccCC--CCeEEEEECC--eEE--
Q psy16425         73 NTDPM--KSQVGYLEVVVPP------------DILDYPTSTDMVIREGSNVTLKCAASGSP--KPNITWRREG--GEL--  132 (163)
Q Consensus        73 ~~~~~--~~~~~~l~v~~~p------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~~--~~~--  132 (163)
                      .+...  ....+.|.|..++            .+..... ....+.+|+++.|.|.+.+.|  .+.+.|++++  ..+  
T Consensus        96 ~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~  174 (247)
T 1svz_A           96 GSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQS-GPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKY  174 (247)
T ss_dssp             CSSSSCEECCCEEEEEC---------------CCEEEEC-CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEE
T ss_pred             ccCCccEECCCEEEEEECCccccccccccccCceEEeCC-CceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEE
Confidence            66532  2233567776542            1111111 234588999999999999875  5689999863  211  


Q ss_pred             Ee---------------cCCceEE------eceEEEEcchhhhHh
Q psy16425        133 IA---------------QGNGQED------FPFFKRTKKKKKKKK  156 (163)
Q Consensus       133 ~~---------------~~~~~~~------~~~l~i~~v~~~~~~  156 (163)
                      ..               ..+....      ...|+|.+++.+|++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG  219 (247)
T 1svz_A          175 VGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTA  219 (247)
T ss_dssp             EEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCE
Confidence            10               1111111      247999999999875

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.66  E-value=1.9e-15  Score=103.13  Aligned_cols=151  Identities=12%  Similarity=0.139  Sum_probs=95.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ceE---Eee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QTI---LTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~---~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      .++.|.|...+.|.+.|.||+.+. ...   ... ........+|+.+... .+.++|.|.+++.+|+|.|.|.+.+...
T Consensus        17 ~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~n~~~   95 (242)
T 2znx_A           17 NSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGS-GTDFTLSINSVETEDFGMYFCQQSNSXP   95 (242)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecC-CCEEEEEECCCChHHCEEEEEeEecCCc
Confidence            468899999888899999999532 111   110 0000012457766542 3466899999999999999999966532


Q ss_pred             --ceEeEEEEEEcCCc-------------ccccCCCCcEEEeCCCcEEEEeEeccCC--CCeEEEEECC--eEEE---e-
Q psy16425         78 --KSQVGYLEVVVPPD-------------ILDYPTSTDMVIREGSNVTLKCAASGSP--KPNITWRREG--GELI---A-  134 (163)
Q Consensus        78 --~~~~~~l~v~~~p~-------------~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~~--~~~~---~-  134 (163)
                        ......|.|..+|.             ....+  ....+.+|+++.|.|.+.+.|  .+.+.|+++.  ..+.   . 
T Consensus        96 ~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~  173 (242)
T 2znx_A           96 YTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQES--GPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYV  173 (242)
T ss_dssp             CEECCCEEEEEC---------------CCEEEEE--CCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEE
T ss_pred             eEECCCEEEEEcCCCCCCcccccccccceeeecC--CcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEE
Confidence              12345677765442             11111  134588999999999999876  4789999852  2221   0 


Q ss_pred             ------------cCCceEE------eceEEEEcchhhhHh
Q psy16425        135 ------------QGNGQED------FPFFKRTKKKKKKKK  156 (163)
Q Consensus       135 ------------~~~~~~~------~~~l~i~~v~~~~~~  156 (163)
                                  ..+....      ...|+|.+++.+|++
T Consensus       174 ~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G  213 (242)
T 2znx_A          174 SYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTA  213 (242)
T ss_dssp             CTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCE
Confidence                        1111111      237999999999976

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.66  E-value=2.9e-15  Score=101.11  Aligned_cols=128  Identities=15%  Similarity=0.286  Sum_probs=83.5

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceEE---eee----eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTIL---TIQ----THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~~---~~~----~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.+  .+.|.||+.+ +....   ...    ....  ...+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   95 (223)
T 1dee_B           16 KSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYY   95 (223)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHHHCEEEE
Confidence            4688999887654  5789999964 22211   110    0001  124688877543 35789999999999999999


Q ss_pred             EEEEeCCC-------ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEE-CCeEE
Q psy16425         70 CQVNTDPM-------KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRR-EGGEL  132 (163)
Q Consensus        70 C~~~~~~~-------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~-~~~~~  132 (163)
                      |.+.+...       ....+.|.|..    +|.+...+.  ...+.+|+.+.|.|.+.+. |.| .+.|++ ++..+
T Consensus        96 C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l  170 (223)
T 1dee_B           96 CAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVS--CENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDI  170 (223)
T ss_dssp             EEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEEC--TTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBC
T ss_pred             EEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecC--CcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCcc
Confidence            99966431       11334677763    333332111  1124679999999999876 777 999999 87765

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.66  E-value=2.3e-15  Score=118.37  Aligned_cols=142  Identities=20%  Similarity=0.317  Sum_probs=104.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEE----EeCCCceEEEEEcccCCCCCeEEEEEEEeC-CC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGV----THSETKAWYLHIREVRESDRGWYMCQVNTD-PM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~   77 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.        ...++..    ...+.....|.|.+++.+|+|.|+|.+.+. +.
T Consensus       445 ~~v~L~C~~~g~p~p~v~W~~-~g~~l~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  515 (816)
T 3dmk_A          445 PSVFLKCVAGGNPTPEISWEL-DGKKIA--------NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGV  515 (816)
T ss_dssp             SCEEEEEEEECSSCCEEEEEE-TTEECC--------SCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEE
T ss_pred             CCEEEEEEEecCCCCEEEEEE-CCEECC--------CCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCe
Confidence            357889999999999999999 555442        1222222    112223347999999999999999999776 44


Q ss_pred             ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchh-hhH
Q psy16425         78 KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKK-KKK  155 (163)
Q Consensus        78 ~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~-~~~  155 (163)
                      ....+.|.|..+|.+...   ....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ .++.|.|.++.+ +|.
T Consensus       516 ~~~~~~l~V~~~p~~~~~---~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~  592 (816)
T 3dmk_A          516 AEHSAKLNVYGLPYIRQM---EKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQ  592 (816)
T ss_dssp             EEEEEEEEECSSCEECCC---CCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHC
T ss_pred             EEEEEEEEEecCCeeEcc---CCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccC
Confidence            556677888877755432   346788999999999999999999999999988755444332 457899999974 565


Q ss_pred             h
Q psy16425        156 K  156 (163)
Q Consensus       156 ~  156 (163)
                      +
T Consensus       593 G  593 (816)
T 3dmk_A          593 A  593 (816)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.66  E-value=2.4e-15  Score=103.53  Aligned_cols=152  Identities=15%  Similarity=0.153  Sum_probs=89.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--Cce--EEeee---e-eEEe--cC-CeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQT--ILTIQ---T-HVIT--KN-HRIGVTHSETKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~--~~~~~---~-~~~~--~~-~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      ..+.|.|...+.+.+.|.||+..  ...  +....   . ....  .. .+..........++|.|.+++.+|+|.|.|.
T Consensus        18 ~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   97 (259)
T 3omz_A           18 SSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCA   97 (259)
T ss_dssp             CCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCEEEEEE
T ss_pred             CcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcccCEEEEEE
Confidence            46889999998899999999942  111  11111   0 0000  11 2222222334566899999999999999999


Q ss_pred             EEeCCC----ceEeEEEEEEcC-----------------CcccccCCCCcEEEeCCCcEEEEeEeccC-CCCeEEEEECC
Q psy16425         72 VNTDPM----KSQVGYLEVVVP-----------------PDILDYPTSTDMVIREGSNVTLKCAASGS-PKPNITWRREG  129 (163)
Q Consensus        72 ~~~~~~----~~~~~~l~v~~~-----------------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~~  129 (163)
                      +.+...    ......|.|...                 |.+...+  ....+.+|+++.|.|.+.+. |.+.+.|+++.
T Consensus        98 ~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~  175 (259)
T 3omz_A           98 TWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQ--SSVSMPVRKAVTLNCLYETSWWSYYIFWYKRL  175 (259)
T ss_dssp             EECTTSSCEEECCCEEEEEEC------------------CEEECCC--CCEEEETTCCEEECCEEECCCSSCEEEEEEEC
T ss_pred             EeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeC--CEEEEcCCCCEEEEEECCCccCCceEEEeeeC
Confidence            976532    223455666653                 2233322  35778899999999998874 78899999853


Q ss_pred             e--EE--E-e---------cCCceE------EeceEEEEcchhhhHh
Q psy16425        130 G--EL--I-A---------QGNGQE------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       130 ~--~~--~-~---------~~~~~~------~~~~l~i~~v~~~~~~  156 (163)
                      .  .+  . .         ..+...      ....|+|.+++.+|.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG  222 (259)
T 3omz_A          176 PSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSA  222 (259)
T ss_dssp             TTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCS
T ss_pred             CCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCE
Confidence            1  11  1 0         111111      1245999999999875

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.66  E-value=3.4e-16  Score=112.57  Aligned_cols=129  Identities=9%  Similarity=0.049  Sum_probs=92.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC-ceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM-KSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~-~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++.++ .+.               ...    ..|.|.+++.+|+|.|+|.+.+... ....
T Consensus       112 ~~v~l~C~~~~~p~~~v~W~~~~~-~~~---------------~~~----~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~  171 (363)
T 1wio_A          112 QSLTLTLESPPGSSPSVQCRSPRG-KNI---------------QGG----KTLSVSQLELQDSGTWTCTVLQNQKKVEFK  171 (363)
T ss_dssp             SCEEEEEECCTTCCCCEEEECSSS-CEE---------------EES----SEEEECSBCGGGCEECEEEEEETTEEEEEC
T ss_pred             CCEEEEEEcCCCCCCeEEEEcCCC-ccc---------------ccc----eEEEEeeCChhcCCEEEEEEecCCCeEEEE
Confidence            468889998889999999999433 221               111    2899999999999999999976532 2233


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-----CCCCeEEEEECCeEEEe--------cCCceE--------
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-----SPKPNITWRREGGELIA--------QGNGQE--------  140 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~p~v~W~~~~~~~~~--------~~~~~~--------  140 (163)
                      +.+.+...|...     ....+.+|+.+.|.|.+.+     +|.|.+.|++++..+..        ......        
T Consensus       172 ~~l~v~~~p~~~-----~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (363)
T 1wio_A          172 IDIVVLAFQKAS-----SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPK  246 (363)
T ss_dssp             CEECEECCSCSE-----EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSC
T ss_pred             EEEEEecCCCCC-----CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchh
Confidence            455555555432     3556888999999998877     78899999999877544        222111        


Q ss_pred             ----E--eceEEEEcchhhhHh
Q psy16425        141 ----D--FPFFKRTKKKKKKKK  156 (163)
Q Consensus       141 ----~--~~~l~i~~v~~~~~~  156 (163)
                          .  ...|.|.+++.+|++
T Consensus       247 ~~~~~~~~~~L~i~~v~~~d~G  268 (363)
T 1wio_A          247 LQMGKKLPLHLTLPQALPQYAG  268 (363)
T ss_dssp             CBCCSSSSCEEEESSBCGGGCE
T ss_pred             hhcccCCceEEEEccCCcCcCc
Confidence                1  348999999999876

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.66  E-value=2.6e-15  Score=98.36  Aligned_cols=120  Identities=21%  Similarity=0.236  Sum_probs=78.5

Q ss_pred             ceeEEEeeeec-cCCCEEEEEEcCCceEEeeee---e-EE--ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEML-MAESTVAWLRVDTQTILTIQT---H-VI--TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~---~-~~--~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|.... .+.+.|.|++.++..+.....   . .+  ...+|+.+.   ..+++|.|.+++.+|+|.|.|.+.+.
T Consensus        15 ~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~---~~~~sL~I~~v~~~D~G~Y~C~v~~~   91 (180)
T 2dru_A           15 SNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD---KTNGALRIYNVSKEDRGDYYMRMLHE   91 (180)
T ss_dssp             SCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC---TTTCCEEECSCCGGGCEEEEEEEESS
T ss_pred             CCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe---CCCccEEEcCCCHHHCeEEEEEEEcC
Confidence            46888887643 457899999943333322111   1 11  122677762   12348999999999999999999654


Q ss_pred             CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEE
Q psy16425         76 PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAA-SGSPKPNITWRREGGELI  133 (163)
Q Consensus        76 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~  133 (163)
                      ......+.|.|..++..+      ... ..+.++.|.|.+ .+ |.|.+.|++++..+.
T Consensus        92 ~~~~~~~~L~V~~~~~~P------~i~-~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~  142 (180)
T 2dru_A           92 TEDQWKITMEVYEMVSKP------MIY-WECSNATLTCEVLEG-TDVELKLYQGKEHLR  142 (180)
T ss_dssp             SEEEEEEEEEEECCCCCC------EEE-EEGGGTEEEEECSSC-TTCEEEEEETTEEEE
T ss_pred             CeEEEEEEEEEECCCCCC------EEE-ecCCCEEEEEEeCCC-CCCEEEEEECCeECc
Confidence            433444566666543211      122 245679999999 56 999999999998874

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.66  E-value=1.5e-15  Score=104.28  Aligned_cols=125  Identities=20%  Similarity=0.249  Sum_probs=79.4

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCC-ceE---Eee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDT-QTI---LTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~-~~~---~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.  +.+.|.||+.+. ...   ... ........+|+.....+ ..++|.|.+++.+|+|.|.|.+.+.
T Consensus        18 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (256)
T 3ux9_B           18 QRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSG-TSASLAITGLQSEDEADYYCQVRDN   96 (256)
T ss_dssp             CCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-TEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccC-CEEEEEECCCChhhCEEEEEEEEEC
Confidence            468889988776  788999999531 111   100 01111123566665432 5678999999999999999999764


Q ss_pred             CC----ceEeEEEEEEcCCccc------------------ccCCCCcEEEeCCCcEEEEeEeccCC--CCeEEEEEC
Q psy16425         76 PM----KSQVGYLEVVVPPDIL------------------DYPTSTDMVIREGSNVTLKCAASGSP--KPNITWRRE  128 (163)
Q Consensus        76 ~~----~~~~~~l~v~~~p~~~------------------~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~  128 (163)
                      ..    ......|.|...+...                  .........+.+|+++.|.|.+.+.|  .+.+.|+++
T Consensus        97 ~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  173 (256)
T 3ux9_B           97 NENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQ  173 (256)
T ss_dssp             TTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEEEEEE
Confidence            21    2233466666543110                  00011245588999999999999876  788999986

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.66  E-value=1.8e-15  Score=103.54  Aligned_cols=138  Identities=13%  Similarity=0.074  Sum_probs=92.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC---Cce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP---MKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~---~~~   79 (163)
                      ..+.|.|...+ +...+.||| ++..+...      ....    ........|.|.+++.+|+|.|+|.+.+..   ..+
T Consensus        22 ~~VtL~C~~~~-~~~~~~w~k-~g~~~~~~------~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S   89 (242)
T 1p6f_A           22 KQVTICCQGNY-GAVEYQLHF-EGSLFAVD------RPKP----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPS   89 (242)
T ss_dssp             CCEEEEEECCT-TCCEEEEEE-TTEEEEEE------CCSS----CTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCC
T ss_pred             CcEEEEEeeCC-CCcEEEEEE-CCCccccc------cccc----cCCcceeEEEecCCCcccCeEEEEEEecCCccccCC
Confidence            46888888764 457899999 55443211      0000    011234589999999999999999996542   234


Q ss_pred             EeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         80 QVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        80 ~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ..+.|.|..   .|.+...+   ...+.+|++++|.|.+.+. .+.+.|++++..+............|.|.+|+.+|++
T Consensus        90 ~~~~L~V~~~~~~P~i~~~p---~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G  165 (242)
T 1p6f_A           90 NLLDLVVTEMYDTPTLSVHP---GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRG  165 (242)
T ss_dssp             CCEEEEEECCSCCCEEEEES---CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEEEEECSSEEEEEEEECCGGGCE
T ss_pred             cceEEEeecccCCCceEccC---CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCccccCCCceEEEEeCCCccccCE
Confidence            456676664   34444333   3457899999999998764 4699999998765432111124567999999999876

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.65  E-value=1.1e-15  Score=106.49  Aligned_cols=130  Identities=20%  Similarity=0.364  Sum_probs=85.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEeeee---e-E--EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILTIQT---H-V--ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~~~~---~-~--~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .++.|.|...+.+.+.|.||+.+ +..   +.....   . .  ....+|+.+.....++++|.|.+++.+|+|.|.|.+
T Consensus        40 ~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~  119 (279)
T 2wbj_D           40 TSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICSA  119 (279)
T ss_dssp             SCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccCCEEEEEEE
Confidence            46888998888888999999964 111   111110   0 0  012468887765556789999999999999999999


Q ss_pred             EeCC-------CceEeEEEEEEc------CCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCeEEE
Q psy16425         73 NTDP-------MKSQVGYLEVVV------PPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGGELI  133 (163)
Q Consensus        73 ~~~~-------~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~  133 (163)
                      .+..       .......|.|..      +|.+..... ....+.+|+.+.|.|.+.+. |+ +.+.|++++..+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~  194 (279)
T 2wbj_D          120 RDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  194 (279)
T ss_dssp             EETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEEC-CHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECC
T ss_pred             cccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECC-CcccccCCCceEEEEEEeeEcCCCcEEEEEECCEECC
Confidence            7621       112334677765      233322111 11123368999999999986 54 6899999998764

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.65  E-value=4.3e-15  Score=100.08  Aligned_cols=127  Identities=17%  Similarity=0.282  Sum_probs=84.2

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceE---Eeee---e-eEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTI---LTIQ---T-HVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~---~~~~---~-~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.+  .+.|.||+.+ +...   ....   . ...  ...+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   95 (220)
T 2fbj_H           16 GSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYY   95 (220)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChhhCEEEE
Confidence            4688899887654  6889999964 2211   1110   0 001  134688877653 45789999999999999999


Q ss_pred             EEEEeCCC----ceEeEEEEEEcC----CcccccCCCCcEEEeCCCcEEEEeEeccC-CC--CeEEEEECCeEE
Q psy16425         70 CQVNTDPM----KSQVGYLEVVVP----PDILDYPTSTDMVIREGSNVTLKCAASGS-PK--PNITWRREGGEL  132 (163)
Q Consensus        70 C~~~~~~~----~~~~~~l~v~~~----p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--p~v~W~~~~~~~  132 (163)
                      |.+.+...    ....+.|.|...    |.+...+   ...+.+|+.+.|.|.+.+. |.  +.+.|++++..+
T Consensus        96 C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~  166 (220)
T 2fbj_H           96 CARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT---LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI  166 (220)
T ss_dssp             EEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC---CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred             EEEeccccccceecCCEEEEecCCCCCCCEEEEee---cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence            99976532    123356777642    3333222   1124679999999999875 76  689999998764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.65  E-value=6.3e-17  Score=113.94  Aligned_cols=139  Identities=14%  Similarity=0.262  Sum_probs=87.8

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ..+.|.|...+. |.+.|.|++ ++..+.        ...++...   .+..+|.|.+++.+|+|.|+|.+.+... ...
T Consensus        22 ~~v~l~C~~~~~~p~~~v~W~~-~~~~~~--------~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~g-~~~   88 (317)
T 2y25_A           22 CNVLLKCKVANIKKETHIVWYK-DEREIS--------VDEKHDFK---DGICTLLITEFSKKDAGIYEVILKDDRG-KDK   88 (317)
T ss_dssp             TEEEEEEEEESCCTTCEEEEEE-TTEEEC--------CSCC--------CCEEEEETTCCSTTCSCEEEEEESSSC-EEE
T ss_pred             CeEEEEEEEcCCCCCCEEEEEE-CCeEcC--------CCCcEEEE---CCeEEEEEccCCcccCeEEEEEEECCCC-cEE
Confidence            468888987777 789999999 555442        12233222   2345899999999999999999966532 222


Q ss_pred             EEEEEEc--CCcccccCCCCcEEEeCCCcEEEEeEecc----------CCCCeEEEEECCeEEEecCCceE----EeceE
Q psy16425         82 GYLEVVV--PPDILDYPTSTDMVIREGSNVTLKCAASG----------SPKPNITWRREGGELIAQGNGQE----DFPFF  145 (163)
Q Consensus        82 ~~l~v~~--~p~~~~~~~~~~~~~~~g~~~~l~C~~~~----------~p~p~v~W~~~~~~~~~~~~~~~----~~~~l  145 (163)
                      ..+.+.+  .|.+...+  ....+.+|+.+.|.|.+.+          .|.|.+.|++++..+........    ....|
T Consensus        89 ~~~~l~v~~~~~~~~~~--~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L  166 (317)
T 2y25_A           89 SRLKLVDEAFKELMMEV--CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL  166 (317)
T ss_dssp             EEECCSTHHHHHHHHHH--HHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEE
T ss_pred             EEEEEEEecCccccccC--CceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEE
Confidence            3333322  22221111  1222345666666666655          78999999999988765544332    12349


Q ss_pred             EEEcchhhhHh
Q psy16425        146 KRTKKKKKKKK  156 (163)
Q Consensus       146 ~i~~v~~~~~~  156 (163)
                      .|.+++.+|.+
T Consensus       167 ~i~~~~~~d~G  177 (317)
T 2y25_A          167 QINEPTPNDKG  177 (317)
T ss_dssp             EEESCCGGGCE
T ss_pred             EECcCCcccCe
Confidence            99999998875

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.65  E-value=8.1e-15  Score=99.20  Aligned_cols=150  Identities=16%  Similarity=0.190  Sum_probs=90.7

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceEE---eee----eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTIL---TIQ----THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~~---~~~----~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.+  .+.|.||+.+ +....   ...    ....  ...+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   95 (227)
T 1mju_H           16 ASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYY   95 (227)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcccCEEEE
Confidence            4688999887765  6899999964 22211   110    0111  125688776543 45789999999999999999


Q ss_pred             EEEEeCCC--ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEEE--ecCC--
Q psy16425         70 CQVNTDPM--KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGELI--AQGN--  137 (163)
Q Consensus        70 C~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~--~~~~--  137 (163)
                      |.+.+...  ......|.|..    +|.+.....  ...+.+|+.+.|.|.+.|. |.| .+.|++++..+.  ....  
T Consensus        96 C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~  173 (227)
T 1mju_H           96 CANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAP--VCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL  173 (227)
T ss_dssp             EEEEETTEEEECCCEEEEECSSCCBCCEEEEECC--CC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE
T ss_pred             EEECCCCceEEcCcEEEEEcCCCCCCCEEEEecC--CccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCcee
Confidence            99976421  12334677764    233332221  1235679999999999975 777 999999987531  1111  


Q ss_pred             --ce-EEeceEEEEcchhhh
Q psy16425        138 --GQ-EDFPFFKRTKKKKKK  154 (163)
Q Consensus       138 --~~-~~~~~l~i~~v~~~~  154 (163)
                        .. .....|+|..+..+|
T Consensus       174 ~~g~~~~~s~L~i~~~~~~~  193 (227)
T 1mju_H          174 QSDLYTLSSSVTVTSSTWPS  193 (227)
T ss_dssp             ETTEEEEEEEEEECTTTTTT
T ss_pred             cCCeEEEEEEEEEchhhcCC
Confidence              11 233567887777654

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.65  E-value=1.6e-14  Score=99.28  Aligned_cols=152  Identities=16%  Similarity=0.191  Sum_probs=96.2

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCC-ceEEee------e--eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDT-QTILTI------Q--THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~-~~~~~~------~--~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      ..+.|.|...+  .+.+.|.||+... ......      +  .......+|+.+..+. .+.++|.|.+++.+|+|.|.|
T Consensus        24 ~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C  103 (257)
T 3gkz_A           24 QTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSEDTATYYC  103 (257)
T ss_dssp             CCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhhCEEEEE
Confidence            46888898877  4588999999532 111111      0  0001234677766543 356789999999999999999


Q ss_pred             EEEeCC---C--ceEeEEEEEEcC--------------CcccccCCCCcEEEeCCCcEEEEeEeccCCCC-eEEEEEC--
Q psy16425         71 QVNTDP---M--KSQVGYLEVVVP--------------PDILDYPTSTDMVIREGSNVTLKCAASGSPKP-NITWRRE--  128 (163)
Q Consensus        71 ~~~~~~---~--~~~~~~l~v~~~--------------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~--  128 (163)
                      .+.+..   .  ......|.|..+              +.+...  .....+.+|+++.|.|.+.+.|.+ .+.|+++  
T Consensus       104 ~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~  181 (257)
T 3gkz_A          104 SYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQS--PAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKP  181 (257)
T ss_dssp             EEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECS--CSEEEECTTCCEEEEEEESSCCCGGGEEEEEECT
T ss_pred             EEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcC--CceEEEeCCCcEEEEEEEccCccceEEEEEEECC
Confidence            997641   1  123345666554              223322  235778899999999999998877 8999984  


Q ss_pred             CeEEE--ec----------CCceE----EeceEEEEcchhhhHh
Q psy16425        129 GGELI--AQ----------GNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       129 ~~~~~--~~----------~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      +..+.  ..          .+...    ....|+|.+++.+|.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  225 (257)
T 3gkz_A          182 GSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAA  225 (257)
T ss_dssp             TSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCE
Confidence            22221  10          11111    1235999999999875

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.65  E-value=1.2e-14  Score=99.64  Aligned_cols=152  Identities=14%  Similarity=0.195  Sum_probs=97.6

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcC-CceEEee---------eeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVD-TQTILTI---------QTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~---------~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+  .+.+.|.||+.. +......         ........+|+.+.... .+.++|.|.+++.+|+|.|.
T Consensus        17 ~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   96 (253)
T 3uzq_A           17 ASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSGDTAVYY   96 (253)
T ss_dssp             CCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCcccCEEEE
Confidence            46888898776  347899999943 2222111         01111234677776544 35778999999999999999


Q ss_pred             EEEEeCCCc--eEeEEEEEEc---------------CCcccccCCCCcEEEeCCCcEEEEeEeccCCCC----eEEEEEC
Q psy16425         70 CQVNTDPMK--SQVGYLEVVV---------------PPDILDYPTSTDMVIREGSNVTLKCAASGSPKP----NITWRRE  128 (163)
Q Consensus        70 C~~~~~~~~--~~~~~l~v~~---------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p----~v~W~~~  128 (163)
                      |.+.+....  .....|.|..               ++.+...+  ....+.+|+++.|.|.+.+.|.+    .+.|+++
T Consensus        97 C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~  174 (253)
T 3uzq_A           97 CSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTP--ASLAVSLGQRATISCRASENVDRYGNSFMHWYQQ  174 (253)
T ss_dssp             EEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEEC--SEEEECTTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             EEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcC--CeEEEeCCCCEEEEEEecCccccCCCcEEEEEEE
Confidence            999664322  2345666664               23333322  35778899999999999998876    8999984


Q ss_pred             --CeEEE--ec----------CCceE----EeceEEEEcchhhhHh
Q psy16425        129 --GGELI--AQ----------GNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       129 --~~~~~--~~----------~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                        +..+.  ..          .+...    ....|+|.+++.+|.+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  220 (253)
T 3uzq_A          175 KAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVA  220 (253)
T ss_dssp             CTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCE
Confidence              22211  00          11111    1235999999999875

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.64  E-value=2e-15  Score=100.03  Aligned_cols=126  Identities=23%  Similarity=0.319  Sum_probs=80.3

Q ss_pred             ceeEEEeeee----ccCCCEEEEEEcCCceEEeee-ee---EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEM----LMAESTVAWLRVDTQTILTIQ-TH---VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~----~~~~~~i~W~k~~~~~~~~~~-~~---~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|...    +.|.+.+.|++ ++..+.... ..   .....+|..+..  .++.+|.|.+++.+|+|.|.|.+.+
T Consensus        10 ~~v~L~C~~~~~~~~~~~~~~~W~~-~~~~i~~~~~~~~~~~~~~~~r~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~~~   86 (201)
T 1dr9_A           10 EVATLSCGHNVSVEELAQTRIYWQK-EKKMVLTMMSGDMNIWPEYKNRTIFDI--TNNLSIVILALRPSDEGTYECVVLK   86 (201)
T ss_dssp             SCEEECCSCCCCTTHHHHCEEEEEE-TTEEEEEEETTEEEECHHHHTTEEEES--TTTTEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEecccCCCcccccccEEEEEe-CCcEEEEEeCCceeecCcccceeEEcc--CCCcEEEEecccchhCeEEEEEEEc
Confidence            4678888874    45778999999 455443211 11   001233444422  2345899999999999999999977


Q ss_pred             CC-Cc-----eEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEe
Q psy16425         75 DP-MK-----SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIA  134 (163)
Q Consensus        75 ~~-~~-----~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~  134 (163)
                      .. ..     ...+.|.|..++..+.   ........|+.+.|.|.+. |+|.|.+.|++++..+..
T Consensus        87 ~~g~~~~~~~~~~~~l~V~~~~~~p~---~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~  150 (201)
T 1dr9_A           87 YEKDAFKREHLAEVTLSVKADFPTPS---ISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNA  150 (201)
T ss_dssp             CCTTSCEEEEEEEEEEEEECCCCCCE---EEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECC
T ss_pred             CCCCccccccccEEEEEEcCCCCCCc---eEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECcc
Confidence            52 22     2344555554422111   0111224588899999995 999999999999887753

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.64  E-value=3.8e-17  Score=116.07  Aligned_cols=139  Identities=15%  Similarity=0.226  Sum_probs=47.0

Q ss_pred             eeEEEeeeecc-CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          4 RMLIEIGEMLM-AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         4 ~~~~~~~~~~~-~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      .+.|.|...+. |.+.|.|++ ++..+.        ...|+...     +.+|.|.+++.+|+|.|+|.+.+.+.....+
T Consensus        25 ~v~l~C~~~~~~p~~~v~W~k-~g~~~~--------~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~~   90 (334)
T 1ry7_B           25 AVELSCPPPGGGPMGPTVWVK-DGTGLV--------PSERVLVG-----PQRLQVLNASHEDSGAYSCRQRLTQRVLCHF   90 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEeeCCCCCCCcceEEEE-CCeeCC--------CcccEEec-----cceEEEeecccccCEEEEEEEEeCCeEEEEE
Confidence            57788888766 578999999 554442        12333332     2389999999999999999997663334444


Q ss_pred             EEEEEcCC----------------------cccccC--CCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc
Q psy16425         83 YLEVVVPP----------------------DILDYP--TSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG  138 (163)
Q Consensus        83 ~l~v~~~p----------------------~~~~~~--~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~  138 (163)
                      .|.|...+                      .+....  ......+.+|+.+.|.|.+.|.|.|.+.|++++..+......
T Consensus        91 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~  170 (334)
T 1ry7_B           91 SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI  170 (334)
T ss_dssp             ----------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSST
T ss_pred             EEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccc
Confidence            55554432                      221111  112356889999999999999999999999999877544332


Q ss_pred             e-----EEeceEEEEcchhhhHh
Q psy16425        139 Q-----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       139 ~-----~~~~~l~i~~v~~~~~~  156 (163)
                      .     .....|.|.+++.+|.+
T Consensus       171 ~~~~~~~~~~~L~i~~v~~~d~G  193 (334)
T 1ry7_B          171 GGIKLRHQQWSLVMESVVPSDRG  193 (334)
T ss_dssp             TCCCCCTTTTEEEECSCCGGGCC
T ss_pred             cceecccceEEEEECCCCcccCE
Confidence            1     13457999999998876

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.64  E-value=5e-15  Score=111.17  Aligned_cols=146  Identities=11%  Similarity=0.141  Sum_probs=91.8

Q ss_pred             ceeEEEeeeecc-CCC-EEEEEEcCCceEEeeee-eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCc
Q psy16425          3 ARMLIEIGEMLM-AES-TVAWLRVDTQTILTIQT-HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMK   78 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~-~i~W~k~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~   78 (163)
                      ..+.|.|...+. |.+ .|.|++ ++..+..... ......+.+..      ...|.|.+++.+| |.|+|.+.|. +..
T Consensus       235 ~~~~l~C~~~g~~P~p~~v~W~k-~g~~~~~~~~~~~~~~~g~~~~------~s~L~i~~~~~~d-G~Y~C~a~n~~g~~  306 (523)
T 2rcj_C          235 GTAALGCLVKDYFPQPVTVSWNS-GALTSGVHTFPAVLQSSGLYSL------SSVVTVPSSSLGT-QTYICNVNHKPSNT  306 (523)
T ss_pred             CceEEEEEEeceeCCCeEEEEec-CCcccceEeCCcEecCCCcEEE------EEEEEechhhcCC-ceEEEEEEeCCCCc
Confidence            367888888776 767 899999 4443311110 00111122221      2379999999999 9999999776 333


Q ss_pred             eEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCC----CeEEEEECCeEEEecCCce---------EEeceE
Q psy16425         79 SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPK----PNITWRREGGELIAQGNGQ---------EDFPFF  145 (163)
Q Consensus        79 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~----p~v~W~~~~~~~~~~~~~~---------~~~~~l  145 (163)
                      .....+.+...|.+...++.....+.+|+.+.|.|.+.|.|+    +.+.|++++..+.......         ...+.|
T Consensus       307 ~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L  386 (523)
T 2rcj_C          307 KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVL  386 (523)
T ss_pred             ceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEE
Confidence            444555555555543333222223678999999999998654    4899999998875443211         122357


Q ss_pred             EEEcchhhhHh
Q psy16425        146 KRTKKKKKKKK  156 (163)
Q Consensus       146 ~i~~v~~~~~~  156 (163)
                      .|..+..+|.+
T Consensus       387 ~i~~~~~~d~G  397 (523)
T 2rcj_C          387 TVLHQNWLDGK  397 (523)
T ss_pred             EECHHHhcCCC
Confidence            77777777754

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.64  E-value=1.6e-15  Score=109.59  Aligned_cols=139  Identities=14%  Similarity=0.117  Sum_probs=99.5

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCC------CeEEEEEEEeCCC
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESD------RGWYMCQVNTDPM   77 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d------~G~Y~C~~~~~~~   77 (163)
                      .+.|.|...+.|.+.|.|++.++..+...       .........+    +|.|.+++.+|      +|.|+|.+.+...
T Consensus        21 ~v~l~C~~~g~p~p~v~W~k~~g~~~~~~-------~~~~~~~~~~----~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g   89 (388)
T 2v5m_A           21 GAEIECKASGNPMPEIIWIRSDGTAVGDV-------PGLRQISSDG----KLVFPPFRAEDYRQEVHAQVYACLARNQFG   89 (388)
T ss_dssp             CEEEECEEEEESCCEEEEEETTSCBCCCB-------TTTBEECSTT----EEEECCCCGGGCCHHHHEEEEEEEEEETTE
T ss_pred             cEEEEEECCCCCCCEEEEEcCCCCccccC-------CCceEEcCCc----eEEecccChhhccccccCceEEEEEEccCC
Confidence            58899999999999999999555544211       1111222222    79999999997      9999999977632


Q ss_pred             c--eEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCC---CeEEEEECCeEEEecC-----Cce-EEeceEE
Q psy16425         78 K--SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPK---PNITWRREGGELIAQG-----NGQ-EDFPFFK  146 (163)
Q Consensus        78 ~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---p~v~W~~~~~~~~~~~-----~~~-~~~~~l~  146 (163)
                      .  +..+.+.+.++|.+...+  ....+.+|+.+.|.|.+.+.|.   +.+.|++++..+....     +.. ..++.|.
T Consensus        90 ~~~s~~~~v~v~~~p~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~  167 (388)
T 2v5m_A           90 SIISRDVHVRAVVAQYYEADV--NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH  167 (388)
T ss_dssp             EEECCCEEEEEECCCCCCCBC--CCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEE
T ss_pred             eEEecceEEEEccccccccCc--cceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEE
Confidence            2  345667777777665543  3567889999999999987653   6899999988764321     111 2346899


Q ss_pred             EEcchhhhH
Q psy16425        147 RTKKKKKKK  155 (163)
Q Consensus       147 i~~v~~~~~  155 (163)
                      |.+++.+|.
T Consensus       168 i~~v~~~d~  176 (388)
T 2v5m_A          168 IREVGPEDG  176 (388)
T ss_dssp             ESSCCGGGG
T ss_pred             EecCCcccc
Confidence            999999987

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.64  E-value=1.9e-14  Score=93.42  Aligned_cols=120  Identities=13%  Similarity=0.124  Sum_probs=79.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEE----ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVI----TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   78 (163)
                      .++.|.|... .|.+.|.|++. +..+........    ...+|+.+..   .+.+|.|.+++.+|+|.|.|.+.+... 
T Consensus        11 ~~VtL~c~~~-~~~~~i~W~~~-~~~i~~~~~~~~~~~~~~~~R~~~~~---~~~sL~I~~v~~~DsG~Y~C~~~n~~~-   84 (171)
T 1ccz_A           11 GNVTFHVPSN-VPLKEVLWKKQ-KDKVAELENSEFRAFSSFKNRVYLDT---VSGSLTIYNLTSSDEDEYEMESPNITD-   84 (171)
T ss_dssp             CCEEECCCCS-SCCSCEEEEET-TEEEEEEETTEEEECGGGTTSEEECT---TTCCEEECSCCGGGCEEEEEECTTCCS-
T ss_pred             CCEEEcCCCC-CCcceEEEEeC-CcEEEEEcCCCcccccccCCcEEEeC---CCCeEEECCCChhhCceEEEEEeCCCC-
Confidence            4688888874 48899999994 433332211111    1345665532   234899999999999999999965433 


Q ss_pred             eEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec
Q psy16425         79 SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ  135 (163)
Q Consensus        79 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~  135 (163)
                      ...+.|.|..++..+.      ..... ....|.|.+.+.|.|.++|++++..+...
T Consensus        85 ~~~~~L~V~~~~~~p~------i~~~~-~~~~L~C~~~~~p~p~i~W~~~~~~l~~~  134 (171)
T 1ccz_A           85 TMKFFLYVLEMVSKPM------IYWEC-SNATLTCEVLEGTDVELKLYQGKEHLRSL  134 (171)
T ss_dssp             CEEEEEEEECCCCCCE------EEEET-TTTEEEEECSSCSSCEEEEEETTEEEEEE
T ss_pred             cEEEEEEEECcCCCCE------EEEec-CCcEEEEEeCCCCCcEEEEEECCEECcCC
Confidence            6667787776543211      11111 11379999999899999999999887543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.64  E-value=1.2e-14  Score=97.81  Aligned_cols=151  Identities=17%  Similarity=0.354  Sum_probs=93.7

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCC-ceEEee---ee--------eEEecCCeEEEEeCC-CceEEEEEcccCCCCCeE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDT-QTILTI---QT--------HVITKNHRIGVTHSE-TKAWYLHIREVRESDRGW   67 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~-~~~~~~---~~--------~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~   67 (163)
                      .++.|.|...+  .+.+.|.||+... ......   ..        ......+|+.+..+. .++++|.|.+++.+|+|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~   95 (221)
T 3m8o_H           16 GSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLKSDDTAM   95 (221)
T ss_dssp             CCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCCHHHCEE
Confidence            46888898775  3468999998542 111110   00        011234788777554 467889999999999999


Q ss_pred             EEEEEEeCC---CceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEecc-CCC-C-eEEEEECCeEEEec--
Q psy16425         68 YMCQVNTDP---MKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG-SPK-P-NITWRREGGELIAQ--  135 (163)
Q Consensus        68 Y~C~~~~~~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-p-~v~W~~~~~~~~~~--  135 (163)
                      |.|.+.+..   .......|.|..    +|.+...... ..  .+|+.+.|.|.+.+ .|. + .+.|++++..+...  
T Consensus        96 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~  172 (221)
T 3m8o_H           96 YYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLC-ST--QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNF  172 (221)
T ss_dssp             EEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECC-SC--CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEEC
T ss_pred             EEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCc-cc--ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEc
Confidence            999996642   223345666652    2333211111 11  67999999999987 776 4 89999988765221  


Q ss_pred             -------CCceEEeceEEEEcchhhhHh
Q psy16425        136 -------GNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       136 -------~~~~~~~~~l~i~~v~~~~~~  156 (163)
                             .........|+|..+..+|++
T Consensus       173 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g  200 (221)
T 3m8o_H          173 PPSQDASGDLYTTSSQLTLPATQCLAGK  200 (221)
T ss_dssp             CCEECSSSSCEEEEEEEEEEGGGSCTTC
T ss_pred             CceeeCCCCcEEEEEEEEECHHHcCCCC
Confidence                   111112245778877766543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.64  E-value=4.5e-15  Score=99.17  Aligned_cols=112  Identities=21%  Similarity=0.228  Sum_probs=82.8

Q ss_pred             cceeEEEeeeeccCCC--EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-Cc
Q psy16425          2 AARMLIEIGEMLMAES--TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-MK   78 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~--~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~   78 (163)
                      ...+.|.|.+ +.|.|  .|.|++.+...            ++....   .+...|.|.+++.+|+|.|.|.+.+.. ..
T Consensus        22 G~sv~L~C~a-~~p~P~~~i~W~~~~~~l------------~~~~~~---~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~   85 (210)
T 1gsm_A           22 GASRQLTCRL-ACADRGASVQWRGLDTSL------------GAVQSD---TGRSVLTVRNASLSAAGTRVCVGSCGGRTF   85 (210)
T ss_dssp             TCCEEEEEEE-CCSSTTCEEEEESSTTTT------------CCEEEE---SSEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCCEEEEEEC-CCCCCCcceEEeeccccc------------CcEEec---CCccEEEECccCcccCceEEEEEEeCCCce
Confidence            3568899988 78878  99999954321            122211   123489999999999999999997764 33


Q ss_pred             eEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC----eEEEEECCeEEE
Q psy16425         79 SQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP----NITWRREGGELI  133 (163)
Q Consensus        79 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p----~v~W~~~~~~~~  133 (163)
                      ...+.|.|..+|.......  . .+.+|+.+ |.|.+.+ .|.+    .+.|++++.++.
T Consensus        86 ~~~~~ltV~~~P~~~~i~~--~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~  141 (210)
T 1gsm_A           86 QHTVQLLVYAFPNQLTVSP--A-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELE  141 (210)
T ss_dssp             EEEEEEEEEBCCSEEEEES--S-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECT
T ss_pred             EEEEEEEEEecCCCcEEcc--c-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcc
Confidence            4577899999987655432  1 46678888 9999987 4754    799999999874

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.63  E-value=8.8e-15  Score=100.32  Aligned_cols=129  Identities=15%  Similarity=0.129  Sum_probs=91.7

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-CceE
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-MKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~   80 (163)
                      ..+.|.|.. .+.|.+.+.|++ ++..+...             ...    ..|.|.+++.+|+|.|+|.+.+.. ..+.
T Consensus        98 ~~v~l~C~~~~~~p~~~v~W~~-~g~~~~~~-------------~~~----~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~  159 (262)
T 3rjd_A           98 EPLALRCHAWKDKLVYNVLYYR-NGKAFKFF-------------HWN----SNLTILKTNISHNGTYHCSGMGKHRYTSA  159 (262)
T ss_dssp             SCEEEEEEEGGGCCCEEEEEEE-TTEEEEEE-------------EEC----CCEEESSCCGGGCEEEEEEEESSSEEEEE
T ss_pred             CeEEEEEEccCCCCCceEEEEE-CCcccccc-------------CCC----CeEEEEECChhhCEEEEEEEeCCCCcccc
Confidence            357788888 677889999999 55554211             011    279999999999999999997653 3344


Q ss_pred             eEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCC-Ce----EEEEECCeEEEecCCceEEeceEEEEcchh
Q psy16425         81 VGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPK-PN----ITWRREGGELIAQGNGQEDFPFFKRTKKKK  152 (163)
Q Consensus        81 ~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~----v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~  152 (163)
                      .+.|.|..   +|.+...+   ...+.+|+.+.|.|.+.+.|. |.    +.|++++..+...    .....|+|.+++.
T Consensus       160 ~~~l~V~~~~~~p~~~~~~---~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~----~~~~~L~i~~v~~  232 (262)
T 3rjd_A          160 GISVTVKELFPAPVLNASV---TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR----NTSSEYQILTARR  232 (262)
T ss_dssp             CEEEEEECSSCCCEEEESS---CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE----ESCCEEEESSCCG
T ss_pred             ceEEEeccCCCCCeEeecC---ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc----CCCceEEEEEech
Confidence            45677765   23333322   345778999999999999876 53    7899999887533    3446799999999


Q ss_pred             hhHh
Q psy16425        153 KKKK  156 (163)
Q Consensus       153 ~~~~  156 (163)
                      +|.+
T Consensus       233 ~d~G  236 (262)
T 3rjd_A          233 EDSG  236 (262)
T ss_dssp             GGCE
T ss_pred             hhCe
Confidence            8875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.63  E-value=2.9e-15  Score=110.22  Aligned_cols=116  Identities=9%  Similarity=0.117  Sum_probs=73.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++. +..+..        ...+  ........+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        64 ~~v~L~C~v~g~P~p~i~W~~~-~~~l~~--------~~~~--~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~  132 (423)
T 3qs7_E           64 ASITLQVLVDAPGNISCLWVFK-HSSLNC--------QPHF--DLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL  132 (423)
T ss_dssp             CCEEEEEECSCCSSCEEEEEET-TEEECC--------CCBC-------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEE
T ss_pred             CcEEEEEEEEcCCCCeEEEEEC-CCccCc--------ccee--ccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEE
Confidence            4688999999999999999994 433211        0000  001112347999999999999999999776 333445


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEE
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGEL  132 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~  132 (163)
                      +.|.|..+|.+...   .......|+.+.|.|.+.|+|.|.++|++++..+
T Consensus       133 ~~l~V~~~p~~~~~---~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~  180 (423)
T 3qs7_E          133 FTVSIRNTLLYTLR---RPYFRKMENQDALVCISESVPEPIVEWVLCDSQG  180 (423)
T ss_dssp             EEEEEC-----CEE---EEEEEECSSSSCEEEEEEESSCCEEEEEEC----
T ss_pred             EEEEEecCcccccc---CCcEeccCCceEEEEEEeeecCCeEEEEECCCCC
Confidence            55666655543211   1223456888899999999999999999988754

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.63  E-value=2.6e-15  Score=114.12  Aligned_cols=147  Identities=15%  Similarity=0.152  Sum_probs=93.8

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeee---EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTH---VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK   78 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   78 (163)
                      ..+.|.|.. .+.|.+.|.|++.+..........   .....+|..+...+    +|.|.+++.+|+|.|+|.+.+....
T Consensus       382 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~L~i~~v~~~D~G~Y~C~~~n~~~~  457 (581)
T 3o3u_N          382 EPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG----SLFLPAVGIQDEGIFRCQAMNRNGK  457 (581)
T ss_dssp             SCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS----CEEESSCCGGGCEEEEEEEECTTSC
T ss_pred             CcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc----eEEEeccccccCeEEEEEEEcCCCc
Confidence            468888988 788999999999543211110000   00113344444443    8999999999999999999766332


Q ss_pred             --eEeEEEEEEcCCcccccCCCCcEEEeCCCc-EEEEeEecc-CCCCeEEEEECCeEEEecCCce---------------
Q psy16425         79 --SQVGYLEVVVPPDILDYPTSTDMVIREGSN-VTLKCAASG-SPKPNITWRREGGELIAQGNGQ---------------  139 (163)
Q Consensus        79 --~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~-~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~---------------  139 (163)
                        ...+.|.|..+|..+........ +.+|+. +.|.|.+.+ +|.|.++|++++..+.......               
T Consensus       458 ~~~~~~~l~V~~~~~~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y  536 (581)
T 3o3u_N          458 ETKSNYRVRVYQIPGKPEIVDSASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLF  536 (581)
T ss_dssp             EEEEEEEEEEEBCCCCCEEESCCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCE
T ss_pred             eeEEEEEEEEEcCCCCCEEEcCCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceE
Confidence              45677888775543332222222 455555 467999987 6999999999998875432221               


Q ss_pred             EEeceEEEEcchhhh
Q psy16425        140 EDFPFFKRTKKKKKK  154 (163)
Q Consensus       140 ~~~~~l~i~~v~~~~  154 (163)
                      .-...|+|..++++|
T Consensus       537 ~~~s~L~i~~~~~~d  551 (581)
T 3o3u_N          537 TLQSELMVTPARGGD  551 (581)
T ss_dssp             EEEEEEEECCCTTSC
T ss_pred             EEEEEEEEEeccccC
Confidence            012457777777555

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.63  E-value=3.8e-15  Score=106.52  Aligned_cols=150  Identities=13%  Similarity=0.181  Sum_probs=94.9

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcC-CceEEeeee-------e--EEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVD-TQTILTIQT-------H--VITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~-~~~~~~~~~-------~--~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.  +.+.|.||+.+ +..+.....       .  .....+|+.+..+. .+.++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   95 (344)
T 1za6_B           16 ASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDTAVYF   95 (344)
T ss_dssp             CCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcccCEEEE
Confidence            467888888765  46889999963 332211100       0  01134677776543 35679999999999999999


Q ss_pred             EEEEeCC-CceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCeEEE--e------
Q psy16425         70 CQVNTDP-MKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGGELI--A------  134 (163)
Q Consensus        70 C~~~~~~-~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~--~------  134 (163)
                      |.+.+.. .......|.|..    +|.+...+.  ...+.+|+.+.|.|.+.|. |. +.+.|++++..+.  .      
T Consensus        96 C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~  173 (344)
T 1za6_B           96 CTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAP--SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQ  173 (344)
T ss_dssp             EEETTTTCEECCCEEEEECSSCCBCCEEEEECC--SCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEEC
T ss_pred             EEEecCcceecCcEEEEEecCCCCCCeEEEccc--cccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeEC
Confidence            9996642 223345677763    333332221  1224689999999999986 65 7999999986521  0      


Q ss_pred             cCCceEEeceEEEEcchhhh
Q psy16425        135 QGNGQEDFPFFKRTKKKKKK  154 (163)
Q Consensus       135 ~~~~~~~~~~l~i~~v~~~~  154 (163)
                      ..........|+|..+..+|
T Consensus       174 ~~~~~~~~s~L~i~~~~~~d  193 (344)
T 1za6_B          174 SSGLYSLSSVVTVPSSSLGT  193 (344)
T ss_dssp             TTSCEEEEEEEEEETTHHHH
T ss_pred             CCCCEEEEEEEEEcHHHcCC
Confidence            11111223478888888766

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.63  E-value=8.8e-16  Score=111.34  Aligned_cols=140  Identities=14%  Similarity=0.154  Sum_probs=96.3

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEccc-CCCCCeEEEEEEEeCCCc--eE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREV-RESDRGWYMCQVNTDPMK--SQ   80 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~~~~~~~~--~~   80 (163)
                      .+.|.|...+.|.|.|.|++ ++..+...      ...++... .+    +|.|.++ +.+|+|.|+|.+.|....  +.
T Consensus        25 ~v~L~C~~~g~P~p~i~W~k-~g~~l~~~------~~~~~~~~-~g----~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~   92 (384)
T 3kld_A           25 KVKLSCEVKGNPKPHIRWKL-NGTDVDIG------MDFRYSVV-DG----SLLINNPNKTQDAGTYQCIATNSFGTIVSR   92 (384)
T ss_dssp             EEEECCEEEEESCCEEEEEE-TTEECCC----------CEEEE-TT----EEEEESCCHHHHCEEEEEEEEETTEEEECC
T ss_pred             eEEEEeEecCCCCCEEEEEE-CCEECcCC------CCccEEEE-CC----EEEEcCCCCcccCEEEEEEEEcCcccEEec
Confidence            58899999999999999999 56554211      12333332 22    6777765 789999999999876322  23


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCceE--EeceEEEEcchhhhHh
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQE--DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~  156 (163)
                      .+.+.+...+.+...+. ....+.+|+.+.|.|... +.|.+.+.|++++.++....+...  ..+.|.|.+|+.+|.+
T Consensus        93 ~~~l~v~~~~~~~~~~~-~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  170 (384)
T 3kld_A           93 EAKLQFAYLENFKTRTR-STVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVG  170 (384)
T ss_dssp             CEEEEEEEECCCSCCCC-CCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCE
T ss_pred             ceEEEEecccccccCCC-CceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCc
Confidence            45566655444433222 356788999999999764 567789999999987654333222  3467999999999876

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.63  E-value=2e-15  Score=113.42  Aligned_cols=141  Identities=16%  Similarity=0.188  Sum_probs=100.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCe-EEEEEEEeCCC--ce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRG-WYMCQVNTDPM--KS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~~~~~--~~   79 (163)
                      ..+.|.|...+.+.+.|.||+.++..+        ....++.....+    .|.|.+++.+|+| .|+|.+.+...  .+
T Consensus       130 ~~v~l~C~~~~~~~~~v~W~~~~g~~l--------~~~~~~~~~~~~----~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s  197 (524)
T 2ec8_A          130 NDTLVRCPLTDPEVTNYSLKGCQGKPL--------PKDLRFIPDPKA----GIMIKSVKRAYHRLCLHCSVDQEGKSVLS  197 (524)
T ss_dssp             SCEEECCCBSCCCCSCEEEECSSSCCC--------CSSCEEEEETTT----EEEEESCCGGGTTCEEEEEEC----CCCC
T ss_pred             CeEEEECcCCCCccceEEEEccCCcCc--------CCCCceeECCCc----cEEEeccchhhCCceEEEEEEECCceEEE
Confidence            367888988887779999998556554        223445544444    7999999999999 99999966532  23


Q ss_pred             EeEEEEEE----cCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCe-EEEEECCeEE--EecCC-------ceEEeceE
Q psy16425         80 QVGYLEVV----VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPN-ITWRREGGEL--IAQGN-------GQEDFPFF  145 (163)
Q Consensus        80 ~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~--~~~~~-------~~~~~~~l  145 (163)
                      ..+.|.|.    .+|.+...+  ....+.+|+++.|.|.+.+.|.|. +.|++++..+  .....       .....+.|
T Consensus       198 ~~~~l~V~~~~~~~p~i~~~~--~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  275 (524)
T 2ec8_A          198 EKFILKVRPAFKAVPVVSVSK--ASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATL  275 (524)
T ss_dssp             CCEECCEECCCCSCCEEECSC--SEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEE
T ss_pred             EEEEEEEEeCCCCCCcEEecC--CcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEE
Confidence            35677776    456655543  355789999999999999999887 9999998772  21111       12356789


Q ss_pred             EEEcchhhhHhh
Q psy16425        146 KRTKKKKKKKKK  157 (163)
Q Consensus       146 ~i~~v~~~~~~~  157 (163)
                      .|.+++.+|.+.
T Consensus       276 ~I~~~~~~D~G~  287 (524)
T 2ec8_A          276 TISSARVNDSGV  287 (524)
T ss_dssp             EESSCCTTTCEE
T ss_pred             EECCCCHHHCEE
Confidence            999999988753

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.63  E-value=2.9e-16  Score=110.45  Aligned_cols=142  Identities=15%  Similarity=0.103  Sum_probs=93.9

Q ss_pred             eeEEEee-eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCc--e
Q psy16425          4 RMLIEIG-EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMK--S   79 (163)
Q Consensus         4 ~~~~~~~-~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~--~   79 (163)
                      .+.+.|. ..+.|.+.|.|++ ++..+.....  .........      ...|.|.++...|+|.|+|.+.+. +..  .
T Consensus       131 ~~~l~C~~~~g~P~~~i~W~~-~~~~~~~~~~--~~~~~~~~~------~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  201 (308)
T 4fom_A          131 TVAAICIAATGKPVAHIDWEG-DLGEMESTTT--SFPNETATI------ISQYKLFPTRFARGRRITCVVKHPALEKDIR  201 (308)
T ss_dssp             EEEEEEEEEEEBSCCEEEECC-CSSBCCEEEE--ECTTSCEEE------EEEEEECCCGGGTTCEEEEEEECTTCSSCEE
T ss_pred             eEEEEEEecCCcCCceEEEEE-CCcccccccc--eeeeecccc------cccceEEeeeecCCccEEEEEEccCCCCceE
Confidence            4667776 4688999999999 4444322111  111121111      126999999999999999999775 333  3


Q ss_pred             EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ..+.|.|..+|.+...+. ....+.+|+.+.|.|.+.|+|+| .+.|++++..+... ....++..+.|.+++.+|++
T Consensus       202 ~~~~l~V~~~P~~~~~~~-~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~-~~~~~~~~l~i~~v~~~d~G  277 (308)
T 4fom_A          202 YSFILDIQYAPEVSVTGY-DGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDG-LLASDNTLHFVHPLTFNYSG  277 (308)
T ss_dssp             EEEECCCCEEEEECCBCC-CSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSS-CBCSTTEEECCSCCCSCCCS
T ss_pred             EeEEEEEecCCeeEEccc-ceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCc-EEEcCCeEEEECCCChhhCE
Confidence            334555666666554433 34567788999999999999988 69999998776432 12223345567788888765

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.63  E-value=1.5e-16  Score=112.09  Aligned_cols=143  Identities=14%  Similarity=0.154  Sum_probs=96.7

Q ss_pred             eeEEEeeeeccC-CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          4 RMLIEIGEMLMA-ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         4 ~~~~~~~~~~~~-~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .+.|.|...+.+ .+.|.|++.+......     .....|+.....     +|.|.+++.+|+|.|+|.+.+. +.....
T Consensus        22 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~-----~~~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (315)
T 1itb_B           22 IDVRPCPLNPNEHKGTITWYKDDSKTPVS-----TEQASRIHQHKE-----KLWFVPAKVEDSGHYYCVVRNSSYCLRIK   91 (315)
T ss_dssp             CCCCBCCCCSCCCSSCCCEECTTSCSCSC-----CCTTSSSEECSS-----BEECTTCCGGGCSCCEECCCSSSCCCCEE
T ss_pred             cEEEEeeccCcCCCceEEEEeCCCcCccc-----cccCCcEeccCC-----eEEECCCChhhCEEEEEEEeCCceEEEEE
Confidence            577888887777 7899999954321110     122344443322     7999999999999999999655 222333


Q ss_pred             EEEEEE-cCCcccccCC-CCcEEEeCCCcEEEEeEe------ccCCCCeEEEEECCeEEEecCC-ceEEeceEEEEcchh
Q psy16425         82 GYLEVV-VPPDILDYPT-STDMVIREGSNVTLKCAA------SGSPKPNITWRREGGELIAQGN-GQEDFPFFKRTKKKK  152 (163)
Q Consensus        82 ~~l~v~-~~p~~~~~~~-~~~~~~~~g~~~~l~C~~------~~~p~p~v~W~~~~~~~~~~~~-~~~~~~~l~i~~v~~  152 (163)
                      ..+.+. .+|.+...+. .....+.+|+++.|.|.+      .+.|.|.+.|++++..+..... ....++.|.|.+++.
T Consensus        92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~  171 (315)
T 1itb_B           92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAE  171 (315)
T ss_dssp             CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCG
T ss_pred             EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEecee
Confidence            333333 2343322211 123567889999999998      7899999999999998754322 234667999999999


Q ss_pred             hhHh
Q psy16425        153 KKKK  156 (163)
Q Consensus       153 ~~~~  156 (163)
                      +|.+
T Consensus       172 ~d~G  175 (315)
T 1itb_B          172 KHRG  175 (315)
T ss_dssp             GGCE
T ss_pred             hhCc
Confidence            9876

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.63  E-value=3.2e-15  Score=103.17  Aligned_cols=138  Identities=14%  Similarity=0.093  Sum_probs=88.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-C-----
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-P-----   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~-----   76 (163)
                      .++.|.|... .+.+.+.|||++ ..+.....   .  .+   ......+..|.|.+++.+|+|.|+|.+.+. .     
T Consensus        22 ~~VtL~C~~~-~~~~~~~W~k~g-~~~~~~~~---~--~~---~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s   91 (257)
T 1b6u_A           22 ETVILQCWSD-VRFQHFLLHREG-KFKDTLHL---I--GE---HHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLS   91 (257)
T ss_dssp             CCEEEEEEES-SCCSEEEEEEES-TTCEEEEE---E--CB---CCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCC
T ss_pred             CCEEEEEecC-CCCcEEEEEECC-CCCCccee---e--ee---ccCCCceEEEEeecCCcccCEEEEEeEeccCCCcccc
Confidence            4688888876 457889999954 33321110   0  00   011123458999999999999999999643 1     


Q ss_pred             CceEeEEEEEEcC---CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-----EEeceEEEE
Q psy16425         77 MKSQVGYLEVVVP---PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-----EDFPFFKRT  148 (163)
Q Consensus        77 ~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-----~~~~~l~i~  148 (163)
                      ..+..+.|.|...   |.+...+.   ..+.+|++++|.|.+.+. .+.+.|++++..+.......     ..+..|.|.
T Consensus        92 ~~S~~~~L~V~~~~~~P~l~~~p~---~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~  167 (257)
T 1b6u_A           92 APSDPLDIVITGLYEKPSLSAQPG---PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLG  167 (257)
T ss_dssp             CCCCCEEEEEECSSCCCEEECSSC---TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEE
T ss_pred             ccCCCEEEecccCCCCcceEccCC---CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccCCceeEEEEec
Confidence            2244556777643   34433332   246889999999999875 47899999998765432111     125679999


Q ss_pred             cchhhhHh
Q psy16425        149 KKKKKKKK  156 (163)
Q Consensus       149 ~v~~~~~~  156 (163)
                      +|+  |++
T Consensus       168 ~v~--D~G  173 (257)
T 1b6u_A          168 PAT--HGG  173 (257)
T ss_dssp             ECC--SCE
T ss_pred             ccc--cCE
Confidence            987  554

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.63  E-value=8.5e-15  Score=101.28  Aligned_cols=152  Identities=17%  Similarity=0.229  Sum_probs=96.2

Q ss_pred             ceeEEEeeeeccC------CCEEEEEEcC-CceE---Eee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425          3 ARMLIEIGEMLMA------ESTVAWLRVD-TQTI---LTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         3 ~~~~~~~~~~~~~------~~~i~W~k~~-~~~~---~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      ..+.|.|...+.+      .+.|.||+.+ +...   ... ........+|+.+... ...++|.|.+++.+|+|.|.|.
T Consensus        21 ~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~L~I~~v~~~DsG~Y~C~   99 (264)
T 2gjj_A           21 EKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGS-GTDFTLTIGSVKAEDLAVYYCQ   99 (264)
T ss_dssp             CCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEE
T ss_pred             CcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecC-CCEEEEEECCCCHHHCEEEEEE
Confidence            4688889887776      6899999953 2211   110 0000012467766542 3467999999999999999999


Q ss_pred             EEeCCC--ceEeEEEEEEcCC------------------cccccCCCCcEEEeCCCcEEEEeEeccCCC--CeEEEEECC
Q psy16425         72 VNTDPM--KSQVGYLEVVVPP------------------DILDYPTSTDMVIREGSNVTLKCAASGSPK--PNITWRREG  129 (163)
Q Consensus        72 ~~~~~~--~~~~~~l~v~~~p------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~~  129 (163)
                      +.+...  ....+.|.|..+|                  .+..... ....+.+|+++.|.|.+.+.|.  +.+.|+++.
T Consensus       100 ~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~  178 (264)
T 2gjj_A          100 QYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQS-GPEVVKTGASVKISCKASGYSFTGYFINWVKKN  178 (264)
T ss_dssp             ECSSSSCEECCCEEEEEECC-------------------CCEEEEC-CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             EecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCC-CCEEEcCCCcEEEEEEEeCCccCCeEEEEEEEC
Confidence            965422  2234567777653                  1211111 2346889999999999998764  789999863


Q ss_pred             --eE--EEe---------------cCCceE------EeceEEEEcchhhhHh
Q psy16425        130 --GE--LIA---------------QGNGQE------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       130 --~~--~~~---------------~~~~~~------~~~~l~i~~v~~~~~~  156 (163)
                        ..  +..               ..+...      ....|+|.+++.+|.+
T Consensus       179 ~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG  230 (264)
T 2gjj_A          179 SGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSA  230 (264)
T ss_dssp             TTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCE
Confidence              21  111               111111      1357999999999875

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.62  E-value=1.3e-15  Score=109.98  Aligned_cols=141  Identities=14%  Similarity=0.148  Sum_probs=98.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCC-CCCeEEEEEEEeCCCc--e
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRE-SDRGWYMCQVNTDPMK--S   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~~~~~~--~   79 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+..      ....++... .+    +|.|.++.. +|+|.|+|.+.+....  +
T Consensus        23 ~~v~l~C~~~g~p~~~v~W~k-~g~~~~~------~~~~~~~~~-~~----~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s   90 (382)
T 1cs6_A           23 EKVTLTCRARANPPATYRWKM-NGTELKM------GPDSRYRLV-AG----DLVISNPVKAKDAGSYQCVATNARGTVVS   90 (382)
T ss_dssp             CEEEECCEEEEESCCEEEEEE-TTEECCC------STTSSEEEE-TT----EEEEESCCHHHHCEEEEEEEEETTEEEEC
T ss_pred             CcEEEEEEecCCCCCEEEEEE-CCEECCc------CCCccEEee-CC----eEEEecccccccCEEEEEEEEcCCcEEEe
Confidence            367889999889999999999 5554421      123455543 22    799999996 9999999999776322  2


Q ss_pred             EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEec--CCceE--EeceEEEEcchhhh
Q psy16425         80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQ--GNGQE--DFPFFKRTKKKKKK  154 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~--~~~~~--~~~~l~i~~v~~~~  154 (163)
                      ..+.+.+...|.+..... ....+.+|+++.|.|.+ .+.|.+.+.|++++..+...  .+...  ..+.|.|.+++.+|
T Consensus        91 ~~~~l~v~~~~~~~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  169 (382)
T 1cs6_A           91 REASLRFGFLQEFSAEER-DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASD  169 (382)
T ss_dssp             CCEEEEEEEECCCCSSCC-CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGG
T ss_pred             cceEEEeeccccccccCC-CceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCccc
Confidence            345677766555443322 35678899999999996 46788999999998764221  11111  33679999999888


Q ss_pred             Hh
Q psy16425        155 KK  156 (163)
Q Consensus       155 ~~  156 (163)
                      .+
T Consensus       170 ~G  171 (382)
T 1cs6_A          170 LG  171 (382)
T ss_dssp             CE
T ss_pred             Ce
Confidence            75

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.62  E-value=9.5e-15  Score=95.86  Aligned_cols=118  Identities=13%  Similarity=0.251  Sum_probs=78.8

Q ss_pred             ceeEEEeeeec--cCCCEEEEEE--cCCceEEeee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEML--MAESTVAWLR--VDTQTILTIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k--~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|...+  .+.+.|.|++  .+. .+....  ...+...+|+.+..++    +|.|.+++.+|+|.|.|.+.+..
T Consensus        15 ~sv~L~~~~~~~~~~~~~i~W~k~~~~~-~i~~~~~~~~~~~~~~R~~~~~ng----sL~I~~v~~~DsG~Y~c~~~n~~   89 (182)
T 1hnf_A           15 QDINLDIPSFQMSDDIDDIKWEKTSDKK-KIAQFRKEKETFKEKDTYKLFKNG----TLKIKHLKTDDQDIYKVSIYDTK   89 (182)
T ss_dssp             SCEEECCTTCCCCSSEEEEEEEEGGGCC-EEEEECGGGCEEESCTTEEECTTS----CEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeCCcccccCcCCEEEEEECCCCc-EEEEEeCccCCCCCCCeEEECCCC----CEEECCCChhhCEEEEEEEEeCC
Confidence            45778875433  5678999999  443 332111  1112345777777555    89999999999999999997653


Q ss_pred             -Cce--EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEE
Q psy16425         77 -MKS--QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGEL  132 (163)
Q Consensus        77 -~~~--~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~  132 (163)
                       ...  ..+.|.|..+...      +.... .+..+.|.|.+.+.|.|.+.|++++..+
T Consensus        90 g~~~~~~~~~L~V~~~~~~------P~i~~-~~~~v~L~C~~~~~p~~~~~W~~~g~~l  141 (182)
T 1hnf_A           90 GKNVLEKIFDLKIQERVSK------PKISW-TCINTTLTCEVMNGTDPELNLYQDGKHL  141 (182)
T ss_dssp             SCEEEEEEEEEEEECCCCC------CEEEE-ETTTTEEEEECSSCSSCEEEEEESSCEE
T ss_pred             CceeEEEEEEEEEcCcCCC------CEEEE-ccCcEEEEeEccCCCCCEEEEEECCEEC
Confidence             322  3445666643211      11112 2447899999999999999999999887

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.62  E-value=1.3e-14  Score=98.17  Aligned_cols=150  Identities=17%  Similarity=0.202  Sum_probs=91.7

Q ss_pred             ceeEEEeeeeccCC----CEEEEEEcC-CceE---Eee---eeeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEE
Q psy16425          3 ARMLIEIGEMLMAE----STVAWLRVD-TQTI---LTI---QTHVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         3 ~~~~~~~~~~~~~~----~~i~W~k~~-~~~~---~~~---~~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y   68 (163)
                      .++.|.|...+.+.    +.|.||+.+ +...   ...   +....  ...+|+.+.... .++++|.|.+++.+|+|.|
T Consensus        16 ~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   95 (228)
T 3bae_H           16 QTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDTADTATY   95 (228)
T ss_dssp             CCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCcccCEEE
Confidence            46889999887764    899999853 2211   111   00001  124678776543 3567999999999999999


Q ss_pred             EEEEEeCCC----------ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEE
Q psy16425         69 MCQVNTDPM----------KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGEL  132 (163)
Q Consensus        69 ~C~~~~~~~----------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~  132 (163)
                      .|.+.+...          ....+.|.|..    +|.+...++  ...+.+|+.+.|.|.+.+. |.| .+.|++++..+
T Consensus        96 ~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~--~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~  173 (228)
T 3bae_H           96 YCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAP--VCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  173 (228)
T ss_dssp             EEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-------CCSEEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred             EEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecc--cccccCCCCEEEEEEEccEeCCCEEEEEeeCCccc
Confidence            999966431          11235677763    333333221  2235689999999999875 877 99999988642


Q ss_pred             E--ec-----CCceEEeceEEEEcchhhh
Q psy16425        133 I--AQ-----GNGQEDFPFFKRTKKKKKK  154 (163)
Q Consensus       133 ~--~~-----~~~~~~~~~l~i~~v~~~~  154 (163)
                      .  ..     .........|+|..+..++
T Consensus       174 ~~~~~~~~~~~~~~~~~s~L~i~~~~~d~  202 (228)
T 3bae_H          174 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS  202 (228)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEEETTTTTT
T ss_pred             CceEcCceeCCCcEEEEEEEEEEhhhcCC
Confidence            1  00     0111123457777776643

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.62  E-value=7.8e-15  Score=102.27  Aligned_cols=128  Identities=12%  Similarity=0.086  Sum_probs=92.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|...+    .|.|++.+. .+..            .....    .+|.|.+++.+|+|.|+|.+.+ + ....+
T Consensus        28 ~~v~l~C~~~~----~i~W~~~~~-~~~~------------~~~~~----~~L~i~~~~~~d~G~Y~C~~~n-g-~~~~~   84 (290)
T 2o26_X           28 DTLSLTCIDPD----FVRWTFKTY-FNEM------------VENKK----NEWIQEKAEATRTGTYTCSNSN-G-LTSSI   84 (290)
T ss_dssp             SCEEEEEECTT----EEEEEEECS-SSCE------------EEECS----SEEEETTCCGGGCEEEEEEESS-S-CEEEE
T ss_pred             CcEEEEECCCC----cEEEecCCc-ceee------------ecCCC----ceEEEeccCHHhCeEEEEEeeC-C-ccEEE
Confidence            36788888776    899999544 3210            00111    2899999999999999999977 3 36667


Q ss_pred             EEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCC-CeEEEE-ECCeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425         83 YLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPK-PNITWR-REGGELIAQGNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        83 ~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~v~W~-~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      .|.|..+|.....  .....+.+|+.+.|.|.+.+ |. |.+.|+ +++..+....... ...+.|.|.+++.+|.+
T Consensus        85 ~l~V~~~~~~~~~--~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G  158 (290)
T 2o26_X           85 YVFVRDPAKLFLV--GLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR  158 (290)
T ss_dssp             EEEEECSSCCBCC--CCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTT
T ss_pred             EEEEeCCCccccc--ccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCC
Confidence            8888887766532  24677889999999999986 77 899995 5666553322222 23468999999999987

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.62  E-value=1.7e-14  Score=98.19  Aligned_cols=130  Identities=16%  Similarity=0.283  Sum_probs=84.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceE---Eee-ee-eEE--ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTI---LTI-QT-HVI--TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~---~~~-~~-~~~--~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|... .+.+.|.||+.+ +...   ... .. ...  ...+|+.+.....++++|.|.+++.+|+|.|.|.+.+
T Consensus        15 ~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   93 (238)
T 1bec_A           15 GKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSVYFCASGG   93 (238)
T ss_dssp             CCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEEEEEEEec
Confidence            4678888874 568899999964 2211   111 10 001  1256777765445678999999999999999999966


Q ss_pred             CCC------ceEeEEEEEEc------CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEEEe
Q psy16425         75 DPM------KSQVGYLEVVV------PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGELIA  134 (163)
Q Consensus        75 ~~~------~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~~  134 (163)
                      ...      ......|.|..      +|.+..... ....+.+|+.+.|.|.+.|. |.| .+.|++++..+..
T Consensus        94 ~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~  166 (238)
T 1bec_A           94 GRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEP-SKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS  166 (238)
T ss_dssp             CTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECC-CSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECT
T ss_pred             CCCCccccccCCCEEEEEeccCCCCCCCceEEECC-ChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCC
Confidence            421      12334577765      333332211 11224579999999999985 755 8999999987643

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.61  E-value=2.2e-16  Score=106.96  Aligned_cols=151  Identities=15%  Similarity=0.182  Sum_probs=78.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ceEE--ee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QTIL--TI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~~--~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      .++.|.|...+.+.+.|.||+.+. ....  ..  ........+|+.... ..++++|.|.+++.+|+|.|.|.+.+...
T Consensus        39 ~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  117 (233)
T 3bqu_C           39 EKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG-YGTDFVFTIENMLSEDVADYYCLQSDNLP  117 (233)
T ss_dssp             --CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE-EEEEEEEC-----CCCCSEEEEEECSSSS
T ss_pred             CCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec-cCCEEEEEECCCCHHHCEEEEEEEecCCc
Confidence            467888988888888899998542 2111  00  000001123333222 12345899999999999999999965422


Q ss_pred             --ceEeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEEEec----CCc-------e
Q psy16425         78 --KSQVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGELIAQ----GNG-------Q  139 (163)
Q Consensus        78 --~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~~~----~~~-------~  139 (163)
                        ......|.|..   +|.+...+..  ....+|+++.|.|.+.+. |++ .+.|++++..+...    ...       .
T Consensus       118 ~~~~~~~~l~V~~~~~~p~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~  195 (233)
T 3bqu_C          118 YTFGGGTNLEIKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTY  195 (233)
T ss_dssp             CCBCCCCBC---CCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCE
T ss_pred             eeecCCEEEEEeCCCCCCEEEEeCCC--HHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCE
Confidence              12223455543   3444332221  112368999999999885 444 79999999876433    000       0


Q ss_pred             EEeceEEEEcchhhhHh
Q psy16425        140 EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 ~~~~~l~i~~v~~~~~~  156 (163)
                      .....|.|..+..+|++
T Consensus       196 ~~~s~L~i~~~~~~d~g  212 (233)
T 3bqu_C          196 SMSSTLTLTKDEYERHN  212 (233)
T ss_dssp             EEEEEEEEEHHHHHTCC
T ss_pred             EEEEEEEECHHHhCCCC
Confidence            12346788888777654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.61  E-value=2.7e-15  Score=108.86  Aligned_cols=142  Identities=20%  Similarity=0.358  Sum_probs=96.9

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCC-CeEEEEEEEeCCCc--
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESD-RGWYMCQVNTDPMK--   78 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~~~~~~--   78 (163)
                      ..+.|.|.. .+.|.+.+.|++.+...+        ....++.....+    +|.|.+++.+| +|.|+|.+.+....  
T Consensus       132 ~~v~l~C~~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~----~l~i~~v~~~d~~G~Y~C~a~n~~~~~~  199 (404)
T 3p3y_A          132 APLTLQCNPPPGLPSPVIFWMSSSMEPI--------TQDKRVSQGHNG----DLYFSNVMLQDMQTDYSCNARFHFTHTI  199 (404)
T ss_dssp             SCEEECCCCCCCSSCCEEEEECTTSCBC--------CCCSSEEECTTS----CEEESSCCSGGGSSCBEEEEECTTTCCE
T ss_pred             CcEEEEeCCCCCCCCCeEEEeCCCcccc--------CCCCcEEEcCCC----cEEEEeeeeccCCcceEEEEEeccccce
Confidence            357788887 788999999999543332        223444444433    79999999999 59999999765322  


Q ss_pred             --eEeEEEEEEcC-------CcccccCC-CCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEE
Q psy16425         79 --SQVGYLEVVVP-------PDILDYPT-STDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKR  147 (163)
Q Consensus        79 --~~~~~l~v~~~-------p~~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i  147 (163)
                        .....+.+...       |.+..... .....+.+|+++.|.|.+.+.|.|.+.|++++..+....... ..++.|.|
T Consensus       200 ~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i  279 (404)
T 3p3y_A          200 QQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRI  279 (404)
T ss_dssp             EECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEE
T ss_pred             eccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEE
Confidence              12234555432       22222111 124568899999999999999999999999998764432211 13578999


Q ss_pred             EcchhhhHh
Q psy16425        148 TKKKKKKKK  156 (163)
Q Consensus       148 ~~v~~~~~~  156 (163)
                      .+++.+|.+
T Consensus       280 ~~~~~~d~G  288 (404)
T 3p3y_A          280 TNVSEEDSG  288 (404)
T ss_dssp             SSCCGGGCE
T ss_pred             ccCCHhHCE
Confidence            999999875

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.61  E-value=4.1e-15  Score=109.17  Aligned_cols=151  Identities=17%  Similarity=0.206  Sum_probs=96.4

Q ss_pred             ceeEEEeeeeccCC----CEEEEEEcC-CceEE---eee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAE----STVAWLRVD-TQTIL---TIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~----~~i~W~k~~-~~~~~---~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .++.|.|...+.+.    +.|.||+.+ +..+.   ... ........|+..... .+..+|.|.+++.+|+|.|+|.+.
T Consensus        17 ~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~   95 (438)
T 1qgc_4           17 QRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGS-RTDFTLTIDPVEADDVATYYCQQS   95 (438)
T ss_dssp             SCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEcc-CCcEEEEeCCCcCcCCeeEEEEEe
Confidence            46888999877776    489999953 22211   000 000112356665542 345689999999999999999997


Q ss_pred             eCCC--ceEeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEEecC----------
Q psy16425         74 TDPM--KSQVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELIAQG----------  136 (163)
Q Consensus        74 ~~~~--~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~~~----------  136 (163)
                      +...  ....+.|.|..   +|.+...+.  .....+|+.+.|.|.+.+ .|.| .+.|++++..+....          
T Consensus        96 n~~~~~~~~~~~l~V~~~~~~P~v~~~~~--~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~  173 (438)
T 1qgc_4           96 NEVPLTFGAGTKLDLKRADAAPTVSIFPP--SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK  173 (438)
T ss_dssp             SSTTCCBCCCEEEEECCCCBCCEEEEECC--CHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTT
T ss_pred             cCCCccccCceeEEecCCCCCCEEEecCC--ChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCC
Confidence            6532  23345666643   444433221  112235789999999987 7777 899999998764330          


Q ss_pred             -CceEEeceEEEEcchhhhHh
Q psy16425        137 -NGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       137 -~~~~~~~~l~i~~v~~~~~~  156 (163)
                       ......+.|.|.++..+|++
T Consensus       174 ~~~~~~~~~L~i~~~~~~d~G  194 (438)
T 1qgc_4          174 DSTYSMSSTLTLTKDEYERHN  194 (438)
T ss_dssp             TCCEEEEEEEEEEHHHHHTCC
T ss_pred             CCcEEEEEEEEEeCcccCCCC
Confidence             00112457899999988865

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.60  E-value=2.5e-14  Score=100.27  Aligned_cols=152  Identities=13%  Similarity=0.167  Sum_probs=93.9

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcCC-ceE---Eeee------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVDT-QTI---LTIQ------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~~-~~~---~~~~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.+  .+.|.||+.+. ...   ....      .......+|+.+.... .++++|.|.+++.+|+|.|.
T Consensus        38 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~  117 (291)
T 2gki_A           38 ASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYY  117 (291)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHHHCEEEE
Confidence            4678888877665  68899999532 111   1100      0001123566655432 24679999999999999999


Q ss_pred             EEEEeCC--Cc----eEeEEEEEEcC----------------CcccccCCCCcEEEeCCCcEEEEeEeccCCCC------
Q psy16425         70 CQVNTDP--MK----SQVGYLEVVVP----------------PDILDYPTSTDMVIREGSNVTLKCAASGSPKP------  121 (163)
Q Consensus        70 C~~~~~~--~~----~~~~~l~v~~~----------------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p------  121 (163)
                      |.+.+..  ..    ...+.|.|..+                +.+...  .....+.+|+++.|.|.+.+.|.+      
T Consensus       118 C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~  195 (291)
T 2gki_A          118 CARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQS--PSSLAVSAGEKVTMSCKSSQSLFNSRTRKN  195 (291)
T ss_dssp             EEEECGGGTTCEEEECCCEEEEECC----------------CCCEECS--CSEEEEETTSCEEEEEEESSCCEETTTTEE
T ss_pred             EEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcC--CCEEEEcCCCcEEEEEEcCCccccccccce
Confidence            9996642  11    12335666551                112221  235678899999999999988765      


Q ss_pred             eEEEEECC--eE--EEe----------cCCceE----EeceEEEEcchhhhHh
Q psy16425        122 NITWRREG--GE--LIA----------QGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       122 ~v~W~~~~--~~--~~~----------~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      .+.|+++.  ..  ...          ..+...    ....|+|.+++.+|.+
T Consensus       196 ~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  248 (291)
T 2gki_A          196 YLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLA  248 (291)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCE
Confidence            89999863  21  111          111111    1247999999999875

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.60  E-value=2.3e-14  Score=98.44  Aligned_cols=149  Identities=15%  Similarity=0.258  Sum_probs=90.5

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCC-ceEEee---e------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDT-QTILTI---Q------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~-~~~~~~---~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+  .+...|.||+... ......   .      .......+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~   95 (253)
T 3liz_H           16 GSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSEDTAMYY   95 (253)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEE
Confidence            46888888765  4467899998542 111111   0      0001234677776544 36788999999999999999


Q ss_pred             EEEEeCC-----CceEeEEEEEE----cCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEE------
Q psy16425         70 CQVNTDP-----MKSQVGYLEVV----VPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGEL------  132 (163)
Q Consensus        70 C~~~~~~-----~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~------  132 (163)
                      |.+.+..     .......|.|.    .+|.+...+.  ...+.+|+.+.|.|.+.+ .|.+ .+.|++++..+      
T Consensus        96 C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~  173 (253)
T 3liz_H           96 CTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAP--GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFP  173 (253)
T ss_dssp             EEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC--------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC
T ss_pred             EEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecC--CcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCC
Confidence            9996542     12233466665    2344432221  234557999999999987 7767 89999998721      


Q ss_pred             --EecCCceEEeceEEEEcchhhh
Q psy16425        133 --IAQGNGQEDFPFFKRTKKKKKK  154 (163)
Q Consensus       133 --~~~~~~~~~~~~l~i~~v~~~~  154 (163)
                        ... ......+.|+|..+..+|
T Consensus       174 ~~~~~-g~~~~~s~L~i~~~~~~d  196 (253)
T 3liz_H          174 AVLQS-DLYTLSSSVTVPSSTWPS  196 (253)
T ss_dssp             CEEET-TEEEEEEEEEEETTSTTT
T ss_pred             ccccC-CeEEEEEEEEEcHHHCCC
Confidence              111 111233567888777665

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=106.31  Aligned_cols=139  Identities=14%  Similarity=0.146  Sum_probs=94.1

Q ss_pred             ceeEEEeeeeccCC--CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--
Q psy16425          3 ARMLIEIGEMLMAE--STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~--~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--   78 (163)
                      ..+.|.|...+ |.  +.|.|++.++..+        ....++.....+    .|.|.+++.+|+|.|+|.+.+....  
T Consensus       105 ~~v~l~C~~~~-~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~~~~~  171 (292)
T 4dkd_C          105 QDALLPCLLTD-PVLEAGVSLVRVRGRPL--------MRHTNYSFSPWH----GFTIHRAKFIQSQDYQCSALMGGRKVM  171 (292)
T ss_dssp             SCEECCEEESS-GGGGSSEEEEEGGGCCC--------CSSCCEECCSSS----CCEETTCCGGGCSEEEEEECSTTSCEE
T ss_pred             CcEEEeeeCCC-CCcceeEEEEecCCCcc--------ccCCcccccCCc----eEEECCCCHHHCeEEEEEEEeCCCcee
Confidence            35677787765 44  7899999645443        122333333322    5999999999999999999765332  


Q ss_pred             eEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccCCC-CeEEEEECCeEEEecCCc------eEEeceEEE
Q psy16425         79 SQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGSPK-PNITWRREGGELIAQGNG------QEDFPFFKR  147 (163)
Q Consensus        79 ~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~~~~~~~~~~------~~~~~~l~i  147 (163)
                      +..+.|.|..    +|.+...+.  ...+.+|+.+.|.|.+.+.|+ +.+.|++++..+......      ....+.|.|
T Consensus       172 s~~~~l~V~~~~~~~p~i~~~~~--~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i  249 (292)
T 4dkd_C          172 SISIRLKVQKVIPGPPALTLVPA--ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNL  249 (292)
T ss_dssp             CCCEEEEEECCCCSSCEEEEESS--CBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCCCCCeEEccCC--ceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEE
Confidence            3356777776    666655443  334568999999999998765 568898888755322111      124458999


Q ss_pred             EcchhhhHh
Q psy16425        148 TKKKKKKKK  156 (163)
Q Consensus       148 ~~v~~~~~~  156 (163)
                      .+++.+|.+
T Consensus       250 ~~v~~~d~G  258 (292)
T 4dkd_C          250 DQVDFQHAG  258 (292)
T ss_dssp             SSCCTTSCE
T ss_pred             CccChhcCe
Confidence            999988865

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.60  E-value=4.1e-14  Score=96.06  Aligned_cols=129  Identities=16%  Similarity=0.277  Sum_probs=80.4

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-Cce---EEeee---eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQT---ILTIQ---THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~---~~~~~---~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .++.|.|...+.+  .+.|.||+.. +..   +....   ....  ...+|+.+..+. .++++|.|.+++.+|+|.|.|
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   95 (232)
T 1dn0_B           16 ETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC   95 (232)
T ss_dssp             SCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcccCEEEEE
Confidence            4688889877654  6789999964 221   11110   0011  134688877643 457899999999999999999


Q ss_pred             EEEe-CC--C----ceEeEEEEEEcC----CcccccCCCCcEEEeCC-CcEEEEeEeccC-CCC-eEEEEE-CCeEEE
Q psy16425         71 QVNT-DP--M----KSQVGYLEVVVP----PDILDYPTSTDMVIREG-SNVTLKCAASGS-PKP-NITWRR-EGGELI  133 (163)
Q Consensus        71 ~~~~-~~--~----~~~~~~l~v~~~----p~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~p-~v~W~~-~~~~~~  133 (163)
                      .+.+ .+  .    ......|.|...    |.+....+  ...+..| +.+.|.|.+.+. |.| .+.|++ ++..+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p--~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~  171 (232)
T 1dn0_B           96 ARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVS--CENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDIS  171 (232)
T ss_dssp             EECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEEC--C------CCSEEEEEEEEEEBSSCCEEEEEETTSCEEC
T ss_pred             EEecCCcCCchhhhcccceEEEEccCCCCCCceEEecc--ccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCcee
Confidence            9963 11  1    123456777652    33322111  1223468 899999999875 876 999999 887753

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.60  E-value=2.4e-14  Score=97.71  Aligned_cols=127  Identities=17%  Similarity=0.193  Sum_probs=83.3

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcC-Cce---EEeee---eeEEe---cCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVD-TQT---ILTIQ---THVIT---KNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~-~~~---~~~~~---~~~~~---~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.  +.+.|.||+.+ +..   +....   .....   ..+|+.+.... .++++|.|.+++.+|+|.|.
T Consensus        17 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   96 (242)
T 1hxm_B           17 KTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYY   96 (242)
T ss_dssp             CCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCcccCEEEE
Confidence            468888987765  67899999954 221   11111   00111   45788876543 36789999999999999999


Q ss_pred             EEEEeCC--C------ceEeEEEEEEcC-------CcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCe
Q psy16425         70 CQVNTDP--M------KSQVGYLEVVVP-------PDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGG  130 (163)
Q Consensus        70 C~~~~~~--~------~~~~~~l~v~~~-------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~  130 (163)
                      |.+.+..  .      ......|.|...       |....... ....+.+|+.+.|.|.+.+. |. +.+.|++++.
T Consensus        97 C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p-~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  173 (242)
T 1hxm_B           97 CALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLP-SIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKS  173 (242)
T ss_dssp             EEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCC-CGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSS
T ss_pred             EeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECC-ChhhcccCCCceEEEEEeeEECCCeEEEEEcCCC
Confidence            9996542  1      123456777753       32222211 12235579999999999875 65 6899999987

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.60  E-value=7.2e-17  Score=125.86  Aligned_cols=153  Identities=17%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEe-cC---------CeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVIT-KN---------HRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~-~~---------~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .++.|.|...+.|.+.|.|++.+............. ..         ....+.........|.|.+++.+|+|.|+|.+
T Consensus       565 ~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  644 (772)
T 3v2a_R          565 ESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA  644 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEE
Confidence            357788988899999999999443322111000000 00         00000111112346999999999999999999


Q ss_pred             EeC-CCce--EeEEEEE--EcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce--EEeceE
Q psy16425         73 NTD-PMKS--QVGYLEV--VVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ--EDFPFF  145 (163)
Q Consensus        73 ~~~-~~~~--~~~~l~v--~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~--~~~~~l  145 (163)
                      .|. +...  ....+.|  ..+|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+.......  .+++.|
T Consensus       645 ~n~~~~~~~s~~~~l~v~~~~~P~~~~~~--~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L  722 (772)
T 3v2a_R          645 QDRKTKKRHCVVRQLTVLERVAPTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL  722 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeCCCCeEEEEEEeecccccCCCEeecCC--CceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEE
Confidence            774 2221  2334444  5567665543  34668889999999999999999999999999886654433  246789


Q ss_pred             EEEcchhhhHhh
Q psy16425        146 KRTKKKKKKKKK  157 (163)
Q Consensus       146 ~i~~v~~~~~~~  157 (163)
                      +|.+++.+|.+.
T Consensus       723 ~I~~v~~~D~G~  734 (772)
T 3v2a_R          723 TIRRVRKEDEGL  734 (772)
T ss_dssp             ------------
T ss_pred             EECcCCHHHCEE
Confidence            999999999874

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.60  E-value=1.6e-14  Score=99.19  Aligned_cols=128  Identities=18%  Similarity=0.300  Sum_probs=80.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceE---Eeeee----eEEecCC-eEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTI---LTIQT----HVITKNH-RIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~---~~~~~----~~~~~~~-r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .++.|.|...+.+.+.|.||+.. +...   .....    ......+ |+.+.......  |.|.+++.+|+|.|.|.+.
T Consensus        17 ~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~--L~I~~v~~~DsG~Y~C~~~   94 (253)
T 3to4_D           17 QAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE--LRLQVANMSQGRTLYCTSS   94 (253)
T ss_dssp             CCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC--CEEEEESCSSCEEEEEEEE
T ss_pred             CcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe--EEEccCChhhCeEEEEEEe
Confidence            46889998888888999999842 1111   11100    0111223 77776655333  9999999999999999996


Q ss_pred             eCCC-------ceEeEEEEEEc------CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEE
Q psy16425         74 TDPM-------KSQVGYLEVVV------PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELI  133 (163)
Q Consensus        74 ~~~~-------~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~  133 (163)
                      +...       ......|.|..      +|.+...+. ....+.+|+.+.|.|.+.+ .|++ .++|++++..+.
T Consensus        95 ~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~  168 (253)
T 3to4_D           95 ADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  168 (253)
T ss_dssp             CSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEEC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             cCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCC-ChhhcccCCceEEEEEEceEECCcEEEEEEECCEECC
Confidence            4421       12233566653      222221111 0111224689999999998 6777 899999998874

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.59  E-value=8.9e-15  Score=100.94  Aligned_cols=127  Identities=15%  Similarity=0.319  Sum_probs=76.9

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceEE---ee----eeeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTIL---TI----QTHV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~~---~~----~~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.+  .+.|.||+.+ +....   ..    +...  ....+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~   95 (257)
T 3bn9_D           16 GSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYY   95 (257)
T ss_dssp             CEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGGGCEEEE
T ss_pred             CcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChhhCEEEE
Confidence            4688999887654  6889999964 22211   11    0011  1235788877643 45789999999999999999


Q ss_pred             EEEEeCCC--------------ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECC
Q psy16425         70 CQVNTDPM--------------KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREG  129 (163)
Q Consensus        70 C~~~~~~~--------------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~  129 (163)
                      |.+.+...              ......|.|..    +|.+....+  ...+.+|+.+.|.|.+.+. |.| .+.|++++
T Consensus        96 C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p--~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g  173 (257)
T 3bn9_D           96 CARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAP--SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA  173 (257)
T ss_dssp             EEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-------------CCCEEEEEBSSCCEEEETTTT
T ss_pred             EEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecC--cccccCCCcEEEEEEEeeEECCCcEEEEeeCC
Confidence            99965421              11234677764    344333221  2235679999999999875 877 89999998


Q ss_pred             eE
Q psy16425        130 GE  131 (163)
Q Consensus       130 ~~  131 (163)
                      ..
T Consensus       174 ~~  175 (257)
T 3bn9_D          174 LT  175 (257)
T ss_dssp             CC
T ss_pred             Cc
Confidence            75

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.59  E-value=3.7e-14  Score=98.02  Aligned_cols=150  Identities=16%  Similarity=0.174  Sum_probs=93.0

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceEEe---ee----eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTILT---IQ----THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~~~---~~----~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.+  .+.|.||+.+ +..+..   ..    ...  ....+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        22 ~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~  101 (261)
T 2xqy_G           22 ASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSEDSAVYY  101 (261)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCcccCeEEE
Confidence            4688899887665  6899999964 222211   00    000  1235677776542 35679999999999999999


Q ss_pred             EEEEeCCC----ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEEe--cCC
Q psy16425         70 CQVNTDPM----KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELIA--QGN  137 (163)
Q Consensus        70 C~~~~~~~----~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~--~~~  137 (163)
                      |.+.+...    ....+.|.|..    +|.+...+.  ...+.+|+.+.|.|.+.+ .|.| .+.|++++..+..  ...
T Consensus       102 C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p--~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~  179 (261)
T 2xqy_G          102 CGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAP--VCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA  179 (261)
T ss_dssp             EEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECC--CCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCC
T ss_pred             EEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCC--CccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCc
Confidence            99976421    12334677764    344333222  122567999999999987 4776 8999998865311  110


Q ss_pred             ----ce-EEeceEEEEcchhhh
Q psy16425        138 ----GQ-EDFPFFKRTKKKKKK  154 (163)
Q Consensus       138 ----~~-~~~~~l~i~~v~~~~  154 (163)
                          .. .....|+|..+..+|
T Consensus       180 ~~~~g~~~~~s~L~i~~~~~~~  201 (261)
T 2xqy_G          180 VLQSDLYTLSSSVTVTSSTWPS  201 (261)
T ss_dssp             EEETTEEEEEEEEEEETTTTTT
T ss_pred             eecCCcEEEEEEEEEeccccCC
Confidence                11 133567887777654

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.59  E-value=1.8e-15  Score=102.44  Aligned_cols=151  Identities=18%  Similarity=0.242  Sum_probs=89.7

Q ss_pred             ceeEEEeeeeccCC-C-EEEEEEcC-CceEE--ee-e-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAE-S-TVAWLRVD-TQTIL--TI-Q-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-~-~i~W~k~~-~~~~~--~~-~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|...+.+. + .|.||+.+ +....  .. . ........|+.... ..++++|.|.+++.+|+|.|.|.+.+.
T Consensus        35 ~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~  113 (234)
T 2j6e_L           35 QRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK-SGTSASLAISGLRSEDEADYYCATWDD  113 (234)
T ss_dssp             CEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE-ETTEEEEEEESCCSTTCSEEEEEEEET
T ss_pred             CcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe-cCCeEEEEECCCCHHHCEEEEEEEEcC
Confidence            46889998776443 3 69999953 22211  00 0 00011235666554 235678999999999999999999766


Q ss_pred             CCc----eEeEEEEEE----cCCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCeEEEecCC---ce---
Q psy16425         76 PMK----SQVGYLEVV----VPPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGGELIAQGN---GQ---  139 (163)
Q Consensus        76 ~~~----~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~~~~~---~~---  139 (163)
                      ...    .....|.|.    .+|.+...+.  .....+|+++.|.|.+.+. |+ +.+.|++++..+.....   ..   
T Consensus       114 ~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~--~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~  191 (234)
T 2j6e_L          114 SLSAVIFGGGTKLTVLGQPKAAPSVTLFPP--SSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQS  191 (234)
T ss_dssp             TTTEEEECCCBCCCBCCCCCCCCCCCEECC--CHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCT
T ss_pred             CcceeEecCCEEEEEecCCCCCCcccccCC--ChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECC
Confidence            431    122344443    2333332221  1123358899999999885 44 38999999987643210   00   


Q ss_pred             ----EEeceEEEEcchhhhHh
Q psy16425        140 ----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 ----~~~~~l~i~~v~~~~~~  156 (163)
                          .....|.|..+..+|.+
T Consensus       192 ~~~~~~~s~L~i~~~~~~d~G  212 (234)
T 2j6e_L          192 NNKYAASSYLSLTPEQWKSHR  212 (234)
T ss_dssp             TSCCBCCEEECCCGGGTTTSC
T ss_pred             CCCEEEEEEEEECHHHcCCCC
Confidence                11235777777776654

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.59  E-value=1.3e-14  Score=97.64  Aligned_cols=122  Identities=19%  Similarity=0.283  Sum_probs=76.7

Q ss_pred             ceeEEEeeeecc---C-CCEEEEEEcCCceEEeeeee--EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLM---A-ESTVAWLRVDTQTILTIQTH--VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~---~-~~~i~W~k~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .++.|.|...+.   | .+.|.|++. +..+......  .....+++..      ..+|.|.+++.+|+|.|+|.+.+..
T Consensus        27 ~~v~L~C~~~g~~~~p~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~D~g~Y~C~~~~~~   99 (218)
T 2rgs_A           27 LTPKVTCVVVDVSEDDPDVQISWFVN-NVEVHTAQTQTHREDYNSTIRV------VSTLPIQHQDWMSGKEFKCKVNNKD   99 (218)
T ss_dssp             SCCEEEEEEEEECTTSCCEEEEEEET-TEEECCCEEEEEEETTTTEEEE------EEEEECCHHHHHTTCCEEEEEEETT
T ss_pred             CCeeEEEEEcCCccCCCceEEEEEEC-CccccCcccccccccCCCeEEE------EEEEEEcHHHcCCCCeEEEEEECCc
Confidence            467888888776   3 379999994 4443211110  0111223322      2379999999999999999997763


Q ss_pred             Cce-EeEEE----EEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEE
Q psy16425         77 MKS-QVGYL----EVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELI  133 (163)
Q Consensus        77 ~~~-~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~  133 (163)
                      ... ....+    .+..+|.+...+....  ..+|+.+.|.|.+.| +|.+ .+.|++++..+.
T Consensus       100 ~~~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  161 (218)
T 2rgs_A          100 LPSPIERTISKIKGLVRAPQVYILPPPAE--QLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEE  161 (218)
T ss_dssp             CSSCEEEEECCCCCCCBCCEEEEECCCGG--GTTSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCCcceEEEeecCCCCCCCEEEEECCChH--HhcCCceEEEEEEEeeeCCCcEEEEEECCEecc
Confidence            322 22222    2334555543332211  235899999999998 6766 899999998763

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.59  E-value=2.2e-14  Score=99.29  Aligned_cols=153  Identities=18%  Similarity=0.243  Sum_probs=91.8

Q ss_pred             ceeEEEeeeeccC-----CCEEEEEEcC-Cce---EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMA-----ESTVAWLRVD-TQT---ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~-----~~~i~W~k~~-~~~---~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|...+.+     .+.|.||+.+ +..   +... ........+|+..... .+.++|.|.+++.+|+|.|.|.+
T Consensus        31 ~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~C~~  109 (268)
T 1x9q_A           31 DQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGS-GTDFTLKINRVEAEDLGVYFCSQ  109 (268)
T ss_dssp             CCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcC-CCEEEEEECCCChhHCEEEEEEE
Confidence            4688899887776     5899999854 221   1110 0000012467766542 35678999999999999999999


Q ss_pred             EeCCC--ceEeEEEEEEcCCccc---------------------ccCCCCcEEEeCCCcEEEEeEeccCCC--CeEEEEE
Q psy16425         73 NTDPM--KSQVGYLEVVVPPDIL---------------------DYPTSTDMVIREGSNVTLKCAASGSPK--PNITWRR  127 (163)
Q Consensus        73 ~~~~~--~~~~~~l~v~~~p~~~---------------------~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~v~W~~  127 (163)
                      .+...  ......|.|...+...                     .........+.+|+++.|.|.+.+.|+  +.+.|++
T Consensus       110 ~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k  189 (268)
T 1x9q_A          110 STHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVR  189 (268)
T ss_dssp             CSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGCEEEEEE
T ss_pred             ecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccccccEEEEEE
Confidence            65422  2233456665432100                     000112457889999999999998764  7899998


Q ss_pred             C--CeEE--Ee-----------------cCCceEE------eceEEEEcchhhhHh
Q psy16425        128 E--GGEL--IA-----------------QGNGQED------FPFFKRTKKKKKKKK  156 (163)
Q Consensus       128 ~--~~~~--~~-----------------~~~~~~~------~~~l~i~~v~~~~~~  156 (163)
                      +  +..+  ..                 ..+....      ...|+|.+++.+|++
T Consensus       190 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG  245 (268)
T 1x9q_A          190 QSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTG  245 (268)
T ss_dssp             EETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             eCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCE
Confidence            5  2222  10                 1111111      247999999999975

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.59  E-value=1.3e-14  Score=96.86  Aligned_cols=153  Identities=18%  Similarity=0.298  Sum_probs=94.1

Q ss_pred             cceeEEEeeeeccCCC---EEEEEEcCCceEEeeee---eE----EecCCeEEEEeC------CCceEEEEEcccCCCCC
Q psy16425          2 AARMLIEIGEMLMAES---TVAWLRVDTQTILTIQT---HV----ITKNHRIGVTHS------ETKAWYLHIREVRESDR   65 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~---~i~W~k~~~~~~~~~~~---~~----~~~~~r~~~~~~------~~~~~~L~i~~v~~~d~   65 (163)
                      +..+.|.|...+.+.+   .|.|+|.++..+.....   ..    .....|......      ..++++|.|.+++.+|+
T Consensus        16 G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~   95 (225)
T 4fmk_A           16 GGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRVEDE   95 (225)
T ss_dssp             TSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCCGGGC
T ss_pred             CCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCCHHHC
Confidence            4578899988776665   48999965544332110   00    011223333221      12456899999999999


Q ss_pred             eEEEEEEEeCCCce--EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCce---
Q psy16425         66 GWYMCQVNTDPMKS--QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQ---  139 (163)
Q Consensus        66 G~Y~C~~~~~~~~~--~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~---  139 (163)
                      |.|.|.+.+.....  ....+.+..+|.....+.  ......++.+.+.|.+. +.|++.+.|++++..+.......   
T Consensus        96 G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~~  173 (225)
T 4fmk_A           96 GNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQ--EVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGIQ  173 (225)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEEC--CBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECSS
T ss_pred             cceEEEEEeCCCcceeeeeeeeeecCCceeeccc--ceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEec
Confidence            99999997653332  233455555555444332  23345677777777664 68889999999876654322111   


Q ss_pred             ----EEeceEEEEcchhhhHh
Q psy16425        140 ----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 ----~~~~~l~i~~v~~~~~~  156 (163)
                          ...+.|.|.++..+|++
T Consensus       174 ~~~~~~~s~L~i~~~~~~d~g  194 (225)
T 4fmk_A          174 AGTVTIISRYSLVPVGRADGV  194 (225)
T ss_dssp             TTCEEEEEEEEECCCGGGTTC
T ss_pred             CCCEEEEEEEEEeeCCHHHCC
Confidence                12346999999998875

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.59  E-value=3.7e-14  Score=104.05  Aligned_cols=145  Identities=13%  Similarity=0.118  Sum_probs=90.7

Q ss_pred             ceeEEEeeeec-cCCC-EEEEEEcCCceEEeeee---eE-EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEML-MAES-TVAWLRVDTQTILTIQT---HV-ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~-~i~W~k~~~~~~~~~~~---~~-~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|...+ .|.+ .|.|++ ++..+.....   .. ...++.+..      ...|.|.+++.+|+|.|+|.+.+..
T Consensus       132 ~~~~l~C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~  204 (438)
T 1qgc_4          132 GGASVVCFLNNFYPKDINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKT  204 (438)
T ss_dssp             TEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEEEEECCCTTTCCEEE------EEEEEEEHHHHHTCCEEEEEEEETT
T ss_pred             CceEEEEEEccccCCCcEEEEEE-CCEEcCCCceeccccccCCCCcEEE------EEEEEEeCcccCCCCeEEEEEEecc
Confidence            36788888766 5666 899999 6655422100   00 011222222      2379999999999999999997763


Q ss_pred             CceEeEEEEEEcC--CcccccCCCCcEEEeCCCcEEEEeEeccCC--CCeEEEEEC--CeEEEe----------------
Q psy16425         77 MKSQVGYLEVVVP--PDILDYPTSTDMVIREGSNVTLKCAASGSP--KPNITWRRE--GGELIA----------------  134 (163)
Q Consensus        77 ~~~~~~~l~v~~~--p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~--~~~~~~----------------  134 (163)
                      ... ...+.+...  +.....+  ....+.+|+++.|.|.+.|.|  .+.+.|+++  +..+..                
T Consensus       205 ~~~-~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~  281 (438)
T 1qgc_4          205 STS-PIVKSFNRNECEVMLVES--GGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDS  281 (438)
T ss_dssp             CSS-CEEEEEETTC-CCEEEEE--CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGG
T ss_pred             cCC-ceecccccccceeEEecC--CceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcc
Confidence            322 233333321  1112112  356788999999999999988  678999986  544321                


Q ss_pred             -cCCceEE------eceEEEEcchhhhHhh
Q psy16425        135 -QGNGQED------FPFFKRTKKKKKKKKK  157 (163)
Q Consensus       135 -~~~~~~~------~~~l~i~~v~~~~~~~  157 (163)
                       ..+....      ...|.|.+++.+|.+.
T Consensus       282 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~  311 (438)
T 1qgc_4          282 VKGRFTISRDNAKNTLYLQMSSLRSADTAM  311 (438)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGCCE
T ss_pred             cCCcEEEEeecCCCeEEEEECCCChhhCEE
Confidence             1111111      2379999999998753

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.58  E-value=9.2e-15  Score=103.25  Aligned_cols=138  Identities=16%  Similarity=0.125  Sum_probs=83.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc----
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK----   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~----   78 (163)
                      ..+.|.|... .+.+.+.|++. +..+.....        ............|.|.+++.+|+|.|+|.+.+....    
T Consensus       134 ~~v~L~C~~~-~~~~~~~w~k~-g~~~~~~~~--------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s  203 (316)
T 3vh8_G          134 ERVILQCWSD-IMFEHFFLHKE-GISKDPSRL--------VGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLS  203 (316)
T ss_dssp             CCEEEEEEES-SCCSEEEEEET-TCCSCCEEE--------ECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCC
T ss_pred             CeEEEEEcCC-CCCcEEEEEEC-CCcccccee--------eeeecCCCceEEEEECCCChhhCceEEEEEecCCCCcccc
Confidence            3577888774 56678999994 443311100        000111112348999999999999999999765321    


Q ss_pred             --eEeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc-----eEEeceEEEE
Q psy16425         79 --SQVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG-----QEDFPFFKRT  148 (163)
Q Consensus        79 --~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~-----~~~~~~l~i~  148 (163)
                        +....|.|..   +|.+...+   ...+.+|+++.|.|.+. .|.+.+.|++++..+......     ......|.|.
T Consensus       204 ~~s~~~~l~V~~~~~~p~i~~~~---~~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~  279 (316)
T 3vh8_G          204 APSDPLDIVVTGPYEKPSLSAQP---GPKVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLG  279 (316)
T ss_dssp             CCCCCEEEEEECSSCCCEEEEES---CSCCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC
T ss_pred             CCCCCEEEEecCCCCCCeEEeCC---CCeecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcC
Confidence              4445666654   33333322   22467899999999997 478899999998765432111     1133678888


Q ss_pred             cchhhhHh
Q psy16425        149 KKKKKKKK  156 (163)
Q Consensus       149 ~v~~~~~~  156 (163)
                      +|+  |++
T Consensus       280 ~v~--D~G  285 (316)
T 3vh8_G          280 PAT--HGG  285 (316)
T ss_dssp             -------C
T ss_pred             CcC--CCE
Confidence            888  654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=108.94  Aligned_cols=136  Identities=11%  Similarity=0.099  Sum_probs=88.9

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceE--e
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQ--V   81 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~--~   81 (163)
                      .+.|.|.+.+.|.|.|.|++.+ ......           .  .............+...|+|.|+|.+.|......  .
T Consensus       156 ~~~L~C~a~G~P~P~i~W~~~~-~~~~~~-----------~--~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~  221 (527)
T 3qs9_E          156 QDALVCISESVPEPIVEWVLCD-SQGESC-----------K--EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL  221 (527)
T ss_dssp             SSCEEEEEEESSCCEEEEEEC---------------------------CEEECCSEECCCCSSCEEEEEECSSCEEEEEC
T ss_pred             ceEEEEEEceecCCeEEEEECC-CCCccc-----------c--ccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceE
Confidence            4568899999999999999943 322100           0  0000011223344568999999999987643322  2


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecC----------CceEEeceEEEEcc
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQG----------NGQEDFPFFKRTKK  150 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~----------~~~~~~~~l~i~~v  150 (163)
                      +.|.|...|..   +. ....+.+|+.+.|.|.+. +.|.|.+.|++++..+....          ........|.|.+|
T Consensus       222 ~~l~V~~~p~~---~p-~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v  297 (527)
T 3qs9_E          222 FTIDLNQTPQT---TL-PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV  297 (527)
T ss_dssp             EEEESSSCCCC---SC-CEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSC
T ss_pred             EEEEEeccCcc---CC-CceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccC
Confidence            45566555654   22 367788999999999996 89999999999998653321          11223456999999


Q ss_pred             hhhhHhh
Q psy16425        151 KKKKKKK  157 (163)
Q Consensus       151 ~~~~~~~  157 (163)
                      +.+|++.
T Consensus       298 ~~~DsG~  304 (527)
T 3qs9_E          298 ARNDTGY  304 (527)
T ss_dssp             CGGGCEE
T ss_pred             CcccCeE
Confidence            9999763

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.58  E-value=3.9e-14  Score=99.86  Aligned_cols=153  Identities=16%  Similarity=0.230  Sum_probs=97.4

Q ss_pred             cceeEEEeeeeccCCC-----EEEEEEcCCceE--Ee--eeeeEEecCCeEEEEeCC----CceEEEEEcccCCCCCeEE
Q psy16425          2 AARMLIEIGEMLMAES-----TVAWLRVDTQTI--LT--IQTHVITKNHRIGVTHSE----TKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~-----~i~W~k~~~~~~--~~--~~~~~~~~~~r~~~~~~~----~~~~~L~i~~v~~~d~G~Y   68 (163)
                      ...+.|.|...+.+.+     .|.|+|.+....  ..  .....+....|+......    .++++|.|.+++.+|+|.|
T Consensus        15 G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   94 (313)
T 4fqp_A           15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNY   94 (313)
T ss_dssp             TSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhCEEE
Confidence            3468888887766655     589999543211  11  112223444555544332    2456899999999999999


Q ss_pred             EEEEEeCCC--ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCce------
Q psy16425         69 MCQVNTDPM--KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQ------  139 (163)
Q Consensus        69 ~C~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~------  139 (163)
                      +|.+.+...  ....+.|.+...|.......  ...+..|+.+.+.|.+. +.|.|.+.|++++..+.......      
T Consensus        95 ~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~--~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~  172 (313)
T 4fqp_A           95 TCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ--KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT  172 (313)
T ss_dssp             EEEEECSSSCEEEEEEEECCBBCCEEEEEEC--CBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTC
T ss_pred             EEEEeeccCcceeeeeeeeeccCCcceeccc--ceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccc
Confidence            999855433  33444555666666544332  33456788889999875 78999999999987764332211      


Q ss_pred             -EEeceEEEEcchhhhHh
Q psy16425        140 -EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 -~~~~~l~i~~v~~~~~~  156 (163)
                       .....|.|..+..+|++
T Consensus       173 ~~~~s~l~i~~~~~~d~g  190 (313)
T 4fqp_A          173 VTVTSLWILVPSSQVDGK  190 (313)
T ss_dssp             EEEEEEEEECCCGGGTTC
T ss_pred             cccceeeeecccccccCe
Confidence             12245777777777754

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.58  E-value=9.1e-14  Score=102.85  Aligned_cols=150  Identities=13%  Similarity=0.169  Sum_probs=95.5

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-Cce---EEeee------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQT---ILTIQ------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~---~~~~~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.+  .+.|.||+.+ +..   +....      .......+|+.+..+. .+.++|.|.+++.+|+|.|+
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   95 (457)
T 1hzh_H           16 ASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYY   95 (457)
T ss_dssp             CCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCcccCEEEE
Confidence            4678888887765  7889999853 221   11110      0011235688776543 35679999999999999999


Q ss_pred             EEEEeCCC-------------ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCe
Q psy16425         70 CQVNTDPM-------------KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGG  130 (163)
Q Consensus        70 C~~~~~~~-------------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~  130 (163)
                      |.+.+...             ....+.|.|..    +|.+...+.  ...+.+|+.+.|.|.+.+. |. +.+.|++++.
T Consensus        96 C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~  173 (457)
T 1hzh_H           96 CARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAP--SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  173 (457)
T ss_dssp             EEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECC--CSCCCTTCCEEEEEEEESBBSCCCEEEETTTTB
T ss_pred             EEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCc--cccccCCCcEEEEEEEeEEeCCCeEEEEEeCCE
Confidence            99966521             22445677764    344333222  2235789999999999886 65 7899999985


Q ss_pred             EEE--------ecCCceEEeceEEEEcchhhh
Q psy16425        131 ELI--------AQGNGQEDFPFFKRTKKKKKK  154 (163)
Q Consensus       131 ~~~--------~~~~~~~~~~~l~i~~v~~~~  154 (163)
                      .+.        ...........|.|.++..+|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d  205 (457)
T 1hzh_H          174 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT  205 (457)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEEEECSGGGGT
T ss_pred             eccceEcCceECCCCCEEEEEEEEecccccCC
Confidence            321        011111223468888888776

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.57  E-value=7e-15  Score=114.69  Aligned_cols=152  Identities=14%  Similarity=0.159  Sum_probs=49.5

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCce
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~   79 (163)
                      ..+.|.|...+  .+.+.+.|++. +..+.............. ..........|.|.+++.+|+|.|+|.+.+. +...
T Consensus       240 ~~v~L~C~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~  317 (772)
T 3v2a_R          240 EKLVLNCTARTELNVGIDFNWEYP-SSKHQHKKLVNRDLKTQS-GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK  317 (772)
T ss_dssp             CCEEEEEEEEECTTCCCEEEEECC---------CEEEEC------CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEE
T ss_pred             CcEEEEEEEecCCCCceeEEEecC-CccCCCceeeeccccccc-cccceEEEEEEEECcCCcCCCeEEEEEEEcCCccee
Confidence            35777888766  55678999994 433211100000000000 0000012348999999999999999999765 3345


Q ss_pred             EeEEEEEEcCCcccccC-CCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425         80 QVGYLEVVVPPDILDYP-TSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ..+.|.|..+|.+...+ ......+.+|+.+.|.|.+.++|.|.+.|++++..+...... .....|.|.+++.+|.+.
T Consensus       318 ~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~-~~~~~L~i~~v~~~d~G~  395 (772)
T 3v2a_R          318 NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI-KAGHVLTIMEVSERDTGN  395 (772)
T ss_dssp             EEEEEEEECCCC-------------------------------------------------------------------
T ss_pred             EEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceE-ccceeEEEecCChhcCce
Confidence            56678888887665433 112456788999999999999999999999999887553222 244778899998888763

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.57  E-value=5.1e-14  Score=94.40  Aligned_cols=128  Identities=16%  Similarity=0.309  Sum_probs=83.9

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceE---Eeee--e-eEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTI---LTIQ--T-HVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~---~~~~--~-~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .++.|.|...+.+  .+.|.||+.+ +...   ....  . ...  ...+|+.+..+. .++++|.|.+++.+|+|.|.|
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   95 (215)
T 1c5d_H           16 QTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFC   95 (215)
T ss_dssp             CCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGGCEEEEE
T ss_pred             CcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcccCEEEEE
Confidence            4688899887654  5889999863 2211   1110  0 000  124677776543 356799999999999999999


Q ss_pred             EEEeCC----CceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEE
Q psy16425         71 QVNTDP----MKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGEL  132 (163)
Q Consensus        71 ~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~  132 (163)
                      .+.+..    .....+.|.|..    +|.+...++.  ..+.+|+.+.|.|.+.+. |.| .+.|++++..+
T Consensus        96 ~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H           96 TREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPG--CGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             EECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCC--SSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred             EEecCCcccceEcCCEEEEecCCCCCCCeEEeccCC--hhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence            996542    122345677763    3333332211  124679999999999985 888 99999988653

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.57  E-value=6.2e-15  Score=104.91  Aligned_cols=140  Identities=14%  Similarity=0.222  Sum_probs=95.6

Q ss_pred             ceeEEEee-----eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIG-----EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~-----~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..+.|.|.     ..+.|.+.|.|++ ++..+.       ....++.....   ...|.|.+++.+|+|.|+|.+.+...
T Consensus       136 ~~v~l~C~~~~~~~~g~p~~~v~W~k-~g~~~~-------~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g  204 (339)
T 3o4o_C          136 TSGVLVCPDLSEFTRDKTDVKIQWYK-DSLLLD-------KDNEKFLSVRG---TTHLLVHDVALEDAGYYRCVLTFAHE  204 (339)
T ss_dssp             SCEEEECCSCTTTCCSSSCCCBCCEE-SSCBCC-------TTCSSEEECTT---SSEEEESSCCGGGCEEEEEEEECCBT
T ss_pred             CCEEEEecCCcccccCCCCceEEEec-CCeeCC-------CCCceeEEcCC---cceEEEcccCHhhCeEEEEEEEECCC
Confidence            45778888     7888999999999 555442       12234443322   13899999999999999999976522


Q ss_pred             -----ceEeEEEEEEc-----CCcccccCCCCcEEEeCCCcEEEEeEe---ccCC-CCeEEEEECCeEEEec--------
Q psy16425         78 -----KSQVGYLEVVV-----PPDILDYPTSTDMVIREGSNVTLKCAA---SGSP-KPNITWRREGGELIAQ--------  135 (163)
Q Consensus        78 -----~~~~~~l~v~~-----~p~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p-~p~v~W~~~~~~~~~~--------  135 (163)
                           ....+.|.|..     +|.+...  .....+.+|+.+.|.|.+   .|.| .+.+.|++++..+...        
T Consensus       205 ~~~~~~~~~~~l~V~~~~~~~~P~i~~~--~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~  282 (339)
T 3o4o_C          205 GQQYNITRSIELRIKKKKEETIPVIISP--LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE  282 (339)
T ss_dssp             TBCCEEEEEEEEEEECCCCCCCCEECCC--SCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEE
T ss_pred             CeEEEEEEEEEEEEEcCCCCCCCEEecC--CceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeeccccccccccee
Confidence                 24455666664     3344332  234567889999999999   8999 8899999998764211        


Q ss_pred             -CCceE-Eec------eEEEEcchhhhH
Q psy16425        136 -GNGQE-DFP------FFKRTKKKKKKK  155 (163)
Q Consensus       136 -~~~~~-~~~------~l~i~~v~~~~~  155 (163)
                       ..... ..+      .|.|.+++.+|.
T Consensus       283 ~~~~~~~~~g~~~~~~~L~i~~v~~~d~  310 (339)
T 3o4o_C          283 GPRQEYSENNENYIEVPLIFDPVTREDL  310 (339)
T ss_dssp             CCCEECCCSSSCEEEECCEECSSCCCSC
T ss_pred             cceEEecccCceEEEEEEEEEEechhhc
Confidence             11111 112      799999999885

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.57  E-value=9.7e-15  Score=103.52  Aligned_cols=143  Identities=15%  Similarity=0.265  Sum_probs=83.3

Q ss_pred             ceeEEEeeeeccCCC--EEEEEEcCCceEEeeeeeEEe--cCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc
Q psy16425          3 ARMLIEIGEMLMAES--TVAWLRVDTQTILTIQTHVIT--KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~--~i~W~k~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   78 (163)
                      ..+.|.|...+.|++  .|.|++ ++..+.........  ..+.+...      ..|.|.....+|+|.|+|.+.+....
T Consensus       133 ~~~~l~C~~~g~p~~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          133 HTVSFTCESHGFSPRDITLKWFK-NGNELSDFQTNVDPVGESVSYSIH------STAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             CEEEEEEEEEEEBSSCCEEEEEE-TTEECCCEEEEEECSSCCSCEEEE------EEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             CEEEEEEEEeCccCCCcEEEEEE-CCEEccccccccccccCCCceEEE------EEEEEechhcCcCceEEEEEeccccC
Confidence            367888888877765  899999 56555322211111  11222222      25778877777889999999776332


Q ss_pred             ----eEeEEE--EEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEEEecCCc--eE-------E
Q psy16425         79 ----SQVGYL--EVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGELIAQGNG--QE-------D  141 (163)
Q Consensus        79 ----~~~~~l--~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~~~~~~--~~-------~  141 (163)
                          .....+  .+..+|.+...+.    .+.+|+.+.|.|.+.|. |++ .+.|+++|..+......  ..       .
T Consensus       206 ~~~~~~~~~~~~~v~~~P~i~~~~~----~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~  281 (327)
T 2wng_A          206 GDPLRGTANLSETIRVPPTLEVTQQ----PVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNW  281 (327)
T ss_dssp             SCCEEEEEEGGGTBCBCCEEEEEEE----CCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEE
T ss_pred             CCcccceEEeccccCCCCEEEEecC----CcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEE
Confidence                122222  2345565544322    16789999999999985 444 79999999987653211  11       1


Q ss_pred             eceEEEEcchhhhHh
Q psy16425        142 FPFFKRTKKKKKKKK  156 (163)
Q Consensus       142 ~~~l~i~~v~~~~~~  156 (163)
                      ...|.|..+..+|.+
T Consensus       282 ~~~L~i~~~~~~d~G  296 (327)
T 2wng_A          282 MSWLLVNVSAHRDDV  296 (327)
T ss_dssp             EEEEEC-------CC
T ss_pred             EEEEEEccccccCCC
Confidence            134777777777754

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.56  E-value=2.5e-14  Score=101.41  Aligned_cols=145  Identities=14%  Similarity=0.201  Sum_probs=87.5

Q ss_pred             ceeEEEeeeecc-CCC---EEEEEEcCCceEEeeeeeE-EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLM-AES---TVAWLRVDTQTILTIQTHV-ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~---~i~W~k~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..+.|.|...+. |.+   .|.|++.++..+....... ...++++.      ....|.|.+++.+|+|.|+|.+.+...
T Consensus       129 ~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~------~~~~L~I~~~~~~D~G~Y~C~a~n~~~  202 (323)
T 2wqr_A          129 KSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT------VTSTLPVGTRDWIEGETYQCRVTHPHL  202 (323)
T ss_dssp             SCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEE------EEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             CeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEE------EEEEEEECHHHccCCCCEEEEEECCCC
Confidence            357888887765 445   8999995544432111110 01222322      123799999999999999999976532


Q ss_pred             ceEeEEEEEE------cCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEEEecCC-----------c
Q psy16425         78 KSQVGYLEVV------VPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGELIAQGN-----------G  138 (163)
Q Consensus        78 ~~~~~~l~v~------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~~~~-----------~  138 (163)
                       .....+.+.      .+|.+...+...  ....|+.+.|.|.+.| .|++ .+.|++++..+.....           .
T Consensus       203 -~~~~~~~v~~~~~~~~~P~v~~~~~~~--~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~  279 (323)
T 2wqr_A          203 -PRALMRSTTKTSGPRAAPEVYAFATPE--WPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSG  279 (323)
T ss_dssp             -SSCEEEEECCCCSCCBCCEEEEEECCC--CTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSS
T ss_pred             -CCCeeeEEEccCCCCCCCEEEEeCCCh--HHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCc
Confidence             222234442      344443322211  1123999999999988 4544 7999999988643210           0


Q ss_pred             eEEeceEEEEcchhhhHh
Q psy16425        139 QEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       139 ~~~~~~l~i~~v~~~~~~  156 (163)
                      ....+.|.|..+..+|.+
T Consensus       280 ~~~~s~L~i~~~~~~d~g  297 (323)
T 2wqr_A          280 FFVFSRLEVTRAEWEQKD  297 (323)
T ss_dssp             EEEEEEEEEEHHHHHHCC
T ss_pred             EEEEEEEEEChHHccCCC
Confidence            112356888888877754

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.55  E-value=1.7e-14  Score=106.28  Aligned_cols=131  Identities=15%  Similarity=0.188  Sum_probs=95.6

Q ss_pred             ceeEEEeeeeccCCCEE-----EEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-
Q psy16425          3 ARMLIEIGEMLMAESTV-----AWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i-----~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-   76 (163)
                      ..+.|.|...+ |.+.+     .|++. +..+         ...+         ...|.|.+++. |+| |+|.+.+.+ 
T Consensus        15 ~~v~L~C~~~g-p~p~~~~~~~~w~k~-~~~~---------~~~~---------~~~l~i~~v~~-d~g-Y~C~a~~~~~   72 (450)
T 1z7z_I           15 GSVLVTCSTSC-DQPMLLGIETPLPKK-ELLL---------PGNN---------RKVYELSNVQE-DSQ-PMCYSNCPDG   72 (450)
T ss_dssp             EEEEEEEECCS-SCCCEEEECSSSCEE-ECCS---------STTT---------EEEEEEEEECS-CBC-CEEEEEETTE
T ss_pred             CcEEEEEEccC-CCcccccccceeeec-ceEe---------cCCC---------ceEEEEEeccc-CCe-eEEEEeCCCC
Confidence            46888999888 88888     89983 3211         0111         22789999987 999 999996553 


Q ss_pred             CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCC---eEEEEECCeEEEecCCc-eEEeceEEEEcchh
Q psy16425         77 MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKP---NITWRREGGELIAQGNG-QEDFPFFKRTKKKK  152 (163)
Q Consensus        77 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~v~W~~~~~~~~~~~~~-~~~~~~l~i~~v~~  152 (163)
                      ..+..+.|.|..+|....... ....+.+|+++.|.|.+.+.|+|   .+.|++++..+...... ....+.|.|.++..
T Consensus        73 ~~~~~~~l~V~~~P~~~~~~~-~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~  151 (450)
T 1z7z_I           73 QSTAKTFLTVYWTPERVELAP-LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRD  151 (450)
T ss_dssp             EEEEECEEEEEBCCSEEEECC-CCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSS
T ss_pred             cceeEEEEEEEeCCCcceecC-CCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeecc
Confidence            344566788888887654332 24568899999999999998888   89999999988655322 12346899999888


Q ss_pred             hhHh
Q psy16425        153 KKKK  156 (163)
Q Consensus       153 ~~~~  156 (163)
                      +|.+
T Consensus       152 ~d~G  155 (450)
T 1z7z_I          152 HHGA  155 (450)
T ss_dssp             CSSC
T ss_pred             ccCc
Confidence            8765

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.55  E-value=1.1e-14  Score=102.86  Aligned_cols=135  Identities=13%  Similarity=0.108  Sum_probs=89.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC------C
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD------P   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~------~   76 (163)
                      ..+.|.|...+. .+.+.|+| ++..+...         .    ........|.|.+++.+|+|.|+|.+.+.      .
T Consensus        39 ~~v~L~C~~~~~-~~~~~W~k-~g~~~~~~---------~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~  103 (316)
T 3vh8_G           39 GHVTLRCHYRHR-FNNFMLYK-EDRIHIPI---------F----HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWS  103 (316)
T ss_dssp             SCEEEEEEBTTB-CCSEEEEE-SSCSSSCH---------H----HHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBC
T ss_pred             CCEEEEEEccCC-CceEEEEe-CCCcccee---------e----cCCcceEEEEECCCCcccCeEEEEEEEcCCCCccee
Confidence            467888888776 68899999 44432110         0    00011237999999999999999998642      1


Q ss_pred             CceEeEEEEEEcC---CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc-----eEEeceEEEE
Q psy16425         77 MKSQVGYLEVVVP---PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG-----QEDFPFFKRT  148 (163)
Q Consensus        77 ~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~-----~~~~~~l~i~  148 (163)
                      ..+....|.|...   |.+...+   ...+.+|+++.|.|.+. .+++.+.|++++..+......     ....+.|.|.
T Consensus       104 ~~s~~~~l~V~~~~~~p~~~~~~---~~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~  179 (316)
T 3vh8_G          104 APSNPVVIMVTGNHRKPSLLAHP---GPLVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIG  179 (316)
T ss_dssp             CCCCCEEEEEECSSCCCEEEEES---CSEEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEEC
T ss_pred             cCCCcEEEEEecCCCCCeEEecC---CCccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEEEEEC
Confidence            2334456666543   3333322   22378999999999995 466789999998765322111     1255789999


Q ss_pred             cchhhhHh
Q psy16425        149 KKKKKKKK  156 (163)
Q Consensus       149 ~v~~~~~~  156 (163)
                      +|+.+|.+
T Consensus       180 ~v~~~D~G  187 (316)
T 3vh8_G          180 PMMLALAG  187 (316)
T ss_dssp             SCCGGGCE
T ss_pred             CCChhhCc
Confidence            99999875

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.54  E-value=7.4e-14  Score=95.83  Aligned_cols=129  Identities=19%  Similarity=0.383  Sum_probs=81.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---EEeeee----eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---ILTIQT----HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~~~~~~----~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|... .+.+.|.||+... ..   +.....    ......+|+.+.....++++|.|.+++.+|+|.|.|.+.+
T Consensus        19 ~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   97 (252)
T 1oga_E           19 QNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSS   97 (252)
T ss_dssp             CCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEES
T ss_pred             CcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEEEEEEEec
Confidence            4678888864 5678999999642 11   111100    0011346777765434567899999999999999999966


Q ss_pred             CC----CceEeEEEEEEc------CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEEE
Q psy16425         75 DP----MKSQVGYLEVVV------PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGELI  133 (163)
Q Consensus        75 ~~----~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~  133 (163)
                      ..    .......|.|..      +|.+..... ....+.+|+.+.|.|.+.+. |.+ .+.|++++..+.
T Consensus        98 ~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~  167 (252)
T 1oga_E           98 RSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  167 (252)
T ss_dssp             STTSCCEECCCEEEEEESCGGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CCccceeECCCEEEEEecccCCCCCCeEEEECC-ChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECC
Confidence            41    112234566653      333322111 11223368999999999974 754 899999998764

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.54  E-value=1.2e-13  Score=93.62  Aligned_cols=129  Identities=16%  Similarity=0.276  Sum_probs=82.2

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCC-ce---EEeee-ee---EEe-cCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDT-QT---ILTIQ-TH---VIT-KNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~-~~---~~~~~-~~---~~~-~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .++.|.|...+.  +.+.|.||+... ..   +.... ..   ... ..+|+.+..+. .++++|.|.+++.+|+|.|.|
T Consensus        17 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   96 (230)
T 1ypz_F           17 ETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYC   96 (230)
T ss_dssp             SCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEE
T ss_pred             CcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChhhCEEEEE
Confidence            467888887664  668899998642 11   11111 10   111 46788877643 367899999999999999999


Q ss_pred             EEEeC---C--CceEeEEEEEEc---------CCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEE-CCeEE
Q psy16425         71 QVNTD---P--MKSQVGYLEVVV---------PPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRR-EGGEL  132 (163)
Q Consensus        71 ~~~~~---~--~~~~~~~l~v~~---------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~-~~~~~  132 (163)
                      .+.+.   .  .......|.|..         +|......+ ....+.+|+.+.|.|.+.+. |. +.+.|++ ++..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p-~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l  174 (230)
T 1ypz_F           97 SYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLP-SVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTI  174 (230)
T ss_dssp             EECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECC-CHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCB
T ss_pred             EEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECC-CchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEc
Confidence            99653   1  112335677762         232222111 12223468899999999875 75 5899999 76654

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.53  E-value=1.6e-13  Score=95.64  Aligned_cols=151  Identities=15%  Similarity=0.235  Sum_probs=93.6

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCC-ce---EEeee------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDT-QT---ILTIQ------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~-~~---~~~~~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.  +.+.|.||+... ..   +....      .......+|+.+..+. ...++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~   95 (280)
T 3fku_X           16 SSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYY   95 (280)
T ss_dssp             CCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCSTTCEECC
T ss_pred             CcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEE
Confidence            467888887654  668999998531 11   11111      1111234577776543 45679999999999999999


Q ss_pred             EEEEeC--------C--CceEeEEEEEEc---------------CCcccccCCCCcEEEeCCCcEEEEeEecc-CC-CCe
Q psy16425         70 CQVNTD--------P--MKSQVGYLEVVV---------------PPDILDYPTSTDMVIREGSNVTLKCAASG-SP-KPN  122 (163)
Q Consensus        70 C~~~~~--------~--~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~p~  122 (163)
                      |.+.+.        .  .......|.|..               ++.+...   +...+.+|+++.|.|.+.+ .+ .+.
T Consensus        96 C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~---p~~~v~~G~~v~L~C~~~~~~~~~~~  172 (280)
T 3fku_X           96 CARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQP---PSVSKGLRQTATLTCTGNSNNVGNQG  172 (280)
T ss_dssp             EEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCC---SEEEECTTCCEEEEEECCCCCCCTTC
T ss_pred             EEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeC---CcEEEecCCCEEEEEEecCCCCCCce
Confidence            999654        1  112234566654               2333332   2377899999999999987 44 478


Q ss_pred             EEEEEC--CeEEEe------------cCCceE----EeceEEEEcchhhhHh
Q psy16425        123 ITWRRE--GGELIA------------QGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       123 v~W~~~--~~~~~~------------~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      +.|++.  +..+..            ..+...    ....|+|.+++.+|.+
T Consensus       173 v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  224 (280)
T 3fku_X          173 AAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEA  224 (280)
T ss_dssp             CEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCS
T ss_pred             EEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCE
Confidence            999873  222211            011111    1235999999999875

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.52  E-value=4.5e-13  Score=98.75  Aligned_cols=150  Identities=16%  Similarity=0.225  Sum_probs=93.9

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceEEeee---------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTILTIQ---------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~~~~~---------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.+  .+.|.||+.+ +.......         .......+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   95 (444)
T 1igt_B           16 GSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMYY   95 (444)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHHHCEEEE
Confidence            4688888887653  6789999864 22221100         0001234678776543 35679999999999999999


Q ss_pred             EEEEeCCC----ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEE--EecCC
Q psy16425         70 CQVNTDPM----KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGEL--IAQGN  137 (163)
Q Consensus        70 C~~~~~~~----~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~--~~~~~  137 (163)
                      |.+.+...    ....+.|.|..    +|.+...+..  ..+.+|+.+.|.|.+.|. |.| .+.|++++..+  .....
T Consensus        96 C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~  173 (444)
T 1igt_B           96 CARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPV--CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA  173 (444)
T ss_dssp             EEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCC--SSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC
T ss_pred             EEEecCCcccccccCcEEEEecCCCCCCCceeEeccc--ccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCc
Confidence            99976532    12334666653    3433322221  124689999999999874 777 99999988752  11111


Q ss_pred             ----c-eEEeceEEEEcchhhh
Q psy16425        138 ----G-QEDFPFFKRTKKKKKK  154 (163)
Q Consensus       138 ----~-~~~~~~l~i~~v~~~~  154 (163)
                          . ....+.|+|.++..+|
T Consensus       174 ~~~~~~~~~~s~L~i~~~~~~d  195 (444)
T 1igt_B          174 VLQSDLYTLSSSVTVTSSTWPS  195 (444)
T ss_dssp             EEETTEEEEEEEEEECSTTTTT
T ss_pred             cccCCcEEEEEEEEEchhhcCC
Confidence                1 1123567888887666

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.52  E-value=7.2e-14  Score=97.12  Aligned_cols=134  Identities=17%  Similarity=0.190  Sum_probs=89.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+    .|.|++.+ ....           +.   .......+|.|.+++.+|+|.|+|.+.+. +.....
T Consensus        20 ~~v~L~C~~~~----~v~W~~~~-~~~~-----------~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~   80 (289)
T 3ejj_X           20 ETVTLRCVSNG----SVEWDGPI-SPYW-----------TL---DPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT   80 (289)
T ss_dssp             CCEEEEEECSS----CCEEECSC-SSSS-----------EE---CCCSSCCEEEESSCCGGGCEEEEEECCC-----CEE
T ss_pred             CCEEEEEEeCC----cEEEccCC-CceE-----------EE---eccCCccEEEEeeeccccCEEEEEEEeccCCcceeE
Confidence            35778887765    48999743 2210           00   01112348999999999999999998554 445666


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCe-EEEEEC-CeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPN-ITWRRE-GGELIAQGNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~-~~~~~~~~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..+|....... ....+.+|+++.|.|.+.+.|.+. +.|++. +..+....... ..++.|.|.+++.+|.+
T Consensus        81 ~~l~V~~~~~~~~~~~-~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  157 (289)
T 3ejj_X           81 IHLYVKDPAHSWNLLA-QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSN  157 (289)
T ss_dssp             EEEEECCSSCSEEESC-SEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCE
T ss_pred             EEEEEeCCCcceeccc-ceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCE
Confidence            7788877665422222 467788999999999999877665 999874 44443332322 24567999999998875

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.52  E-value=5.5e-14  Score=93.78  Aligned_cols=122  Identities=16%  Similarity=0.222  Sum_probs=76.0

Q ss_pred             ceeEEEeeeeccC----CCEEEEEEcCCceEEeeeee--EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMA----ESTVAWLRVDTQTILTIQTH--VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~----~~~i~W~k~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .++.|.|...+.+    ...|.|++.+ ..+......  .....+++..      ...|.|.+++.+|+|.|+|.+.+..
T Consensus        19 ~~v~L~C~~~g~~~~p~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~~~~   91 (207)
T 2vol_A           19 LTPKVTCVVVDISKDDPEVQFSWFVDD-VEVHTAQTKPREEQFNSTFRS------VSELPIMHQDWLNGKEFKCRVNSAA   91 (207)
T ss_dssp             SCCEEEEEEEEECTTCCCCEEEEEETT-EEECCCEEECCCEETTTEEEE------EEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             CceEEEEEEeCcccCCCceEEEEEECC-ccccccccCCCcCcCCCcEEE------EEEEEEehhHcCCCCEEEEEEEccC
Confidence            4678888887764    3599999954 433211100  0011223322      2379999999999999999997653


Q ss_pred             Cc-eEeEEE----EEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425         77 MK-SQVGYL----EVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus        77 ~~-~~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      .. .....+    .+..+|.+...+....  ..+|+.+.|.|.+.| .|+ +.+.|+++|..+.
T Consensus        92 ~~~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  153 (207)
T 2vol_A           92 FPAPIEKTISKTKGRPKAPQVYTLPPPKE--QMAKDKVSLTCMITDFFPEDITVEWESNGQPAE  153 (207)
T ss_dssp             CSSCEEEEECCCCCCCBCCEEEEECCCTG--GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             CCCceEEEeccCCCCCcCCeEEEeCCCHH--HhcCCceEEEEEEeeEECCCCEEEEEECCEecc
Confidence            32 222233    3344665544332211  235899999999998 455 3899999998763

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.51  E-value=3.7e-13  Score=97.36  Aligned_cols=145  Identities=12%  Similarity=0.170  Sum_probs=94.0

Q ss_pred             eeEEEee-eeccCCCEEEEEEcCC--ceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCe---EEEEEEEeCCC
Q psy16425          4 RMLIEIG-EMLMAESTVAWLRVDT--QTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRG---WYMCQVNTDPM   77 (163)
Q Consensus         4 ~~~~~~~-~~~~~~~~i~W~k~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G---~Y~C~~~~~~~   77 (163)
                      .+.|.|. ..+.|.+.|.|++.+.  .....    ......++.....+    +|.|.+++.+|+|   .|+|.+.+...
T Consensus       117 ~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~~----~L~i~~v~~~d~G~~~~Y~C~a~n~~~  188 (395)
T 1bih_A          117 PFQLDCVLPNAYPKPLITWKKRLSGADPNAD----VTDFDRRITAGPDG----NLYFTIVTKEDVSDIYKYVCTAKNAAV  188 (395)
T ss_dssp             EEEECCCCCEEESCCEEEEEEEETTSCGGGC----CCCCCTTEEECTTS----CEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred             cEEEEecCCCCCCCCeEEEEecCCCcCcccc----cccccccEEEcCCC----cEEEEEEeeccCCCceEEEEEEEeccc
Confidence            5778888 4788999999999531  11100    00113455544443    7999999999999   99999976632


Q ss_pred             c-eEeEEEEEE---cCCc-------ccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE------
Q psy16425         78 K-SQVGYLEVV---VPPD-------ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE------  140 (163)
Q Consensus        78 ~-~~~~~l~v~---~~p~-------~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~------  140 (163)
                      . .........   ..+.       .... ......+.+|+.+.|.|.+.|.|.|.+.|++++..+........      
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~  267 (395)
T 1bih_A          189 DEEVVLVEYEIKGVTKDNSGYKGEPVPQY-VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRT  267 (395)
T ss_dssp             SSCEEEEEEEECCCBCCSSCCCCCCEEEE-ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSS
T ss_pred             ceEEEeeeEEecccccccccccCCcCcee-cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecC
Confidence            2 222211111   1100       0000 11356788999999999999999999999999988754432221      


Q ss_pred             EeceEEEEcchhhhHhh
Q psy16425        141 DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       141 ~~~~l~i~~v~~~~~~~  157 (163)
                      .+..|.|.+++.+|.+.
T Consensus       268 ~~~~L~i~~~~~~d~G~  284 (395)
T 1bih_A          268 SGKRLLFKTTLPEDEGV  284 (395)
T ss_dssp             TTSEEEESSCCGGGCEE
T ss_pred             CCceEEEccCChhhCEE
Confidence            22379999999998753

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.51  E-value=4.8e-13  Score=90.62  Aligned_cols=150  Identities=10%  Similarity=0.146  Sum_probs=84.0

Q ss_pred             ceeEEEeeeecc--CCCEE--EEEEcCC-ce---EEee--ee------eEEecCCeEEEEeCC-CceEEEEEcccCCCCC
Q psy16425          3 ARMLIEIGEMLM--AESTV--AWLRVDT-QT---ILTI--QT------HVITKNHRIGVTHSE-TKAWYLHIREVRESDR   65 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i--~W~k~~~-~~---~~~~--~~------~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~   65 (163)
                      .++.|.|...+.  ....+  .||+... ..   +...  ..      ......+|+.+.... .++++|.|.+++.+|+
T Consensus        16 ~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   95 (232)
T 3qhz_H           16 QTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTNMDPVDT   95 (232)
T ss_dssp             SCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECcCChhhC
Confidence            468888887643  22344  9998532 11   1111  00      001234688877654 4678999999999999


Q ss_pred             eEEEEEEEeCC---------CceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccCCC--CeEEEEECCe
Q psy16425         66 GWYMCQVNTDP---------MKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGSPK--PNITWRREGG  130 (163)
Q Consensus        66 G~Y~C~~~~~~---------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~~~  130 (163)
                      |.|.|.+.+..         .......+.|..    .|.+...+.  ...+..|+.+.|.|.+.+.++  ..+.|++++.
T Consensus        96 G~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~--~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~  173 (232)
T 3qhz_H           96 ATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAP--SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  173 (232)
T ss_dssp             EEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC---------CEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             EEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecc--cccccCCCcEEEEEEEeeEeCCCeEEEEEECCE
Confidence            99999996541         122334566652    333332221  234556999999999987443  3588999885


Q ss_pred             EEE--------ecCCceEEeceEEEEcchhhh
Q psy16425        131 ELI--------AQGNGQEDFPFFKRTKKKKKK  154 (163)
Q Consensus       131 ~~~--------~~~~~~~~~~~l~i~~v~~~~  154 (163)
                      .+.        ..+........|+|..+..+|
T Consensus       174 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~  205 (232)
T 3qhz_H          174 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT  205 (232)
T ss_dssp             CTTEEECCCEECTTSCEEEEEEEEEEGGGGGT
T ss_pred             ecceeeccceeCCCCCEEEEEEEEEchhhcCC
Confidence            321        111111223467777766554

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.50  E-value=1.7e-13  Score=100.98  Aligned_cols=138  Identities=14%  Similarity=0.116  Sum_probs=87.2

Q ss_pred             ceeEEEeeeeccCCC---EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC-c
Q psy16425          3 ARMLIEIGEMLMAES---TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM-K   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~---~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~-~   78 (163)
                      .++.|.|...+.|++   .|.|++ ++..+.....   .         ....+..|.|.+++.+|+|.|+|.+.+... .
T Consensus       102 ~~v~L~C~~~g~~~~~~~~v~W~k-~g~~l~~~~~---~---------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  168 (450)
T 1z7z_I          102 KNLTLRCQVEGGAPRANLTVVLLR-GEKELKREPA---V---------GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ  168 (450)
T ss_dssp             SEEEEEEEEECCBCGGGEEEEEEE-TTEEEEEEEC---C---------TTTEEEEEEEECCSSCSSCEEEEEEEEECGGG
T ss_pred             CeEEEEEEecCCCCCcCcEEEEee-CCEEeecccc---c---------ccccceEEEEEeeccccCceEEEEEEcccCCC
Confidence            468899999988888   999999 5655532110   0         011234899999999999999999976522 1


Q ss_pred             e--------EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-C--CCeEEEEECCeEEEecCCceEEeceEEE
Q psy16425         79 S--------QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-P--KPNITWRREGGELIAQGNGQEDFPFFKR  147 (163)
Q Consensus        79 ~--------~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p--~p~v~W~~~~~~~~~~~~~~~~~~~l~i  147 (163)
                      .        ....+.+...|....... ....+.+|+.+.|.|.+.+. |  .+.+.|++++..+...  ....+..+.+
T Consensus       169 ~~~~~~~~s~~~~l~v~~~~~~~p~~~-~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~--~~~~~~~~~~  245 (450)
T 1z7z_I          169 GLELFENTSAPYQLQTFVLPATPPQLV-SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--VTYGNDSFSA  245 (450)
T ss_dssp             TSCEEEEECCCEECEECCCCSSCCEEE-CCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCE--EEEETTEEEE
T ss_pred             CceEEeeccCccceeeeccCCCCCEec-CceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCce--EEecCCceeE
Confidence            1        223344443311100000 11568899999999999998 7  6899999999876542  2222222222


Q ss_pred             E---cchhhhHh
Q psy16425        148 T---KKKKKKKK  156 (163)
Q Consensus       148 ~---~v~~~~~~  156 (163)
                      .   +++.+|.+
T Consensus       246 ~~~~~v~~~d~G  257 (450)
T 1z7z_I          246 KASVSVTAEDEG  257 (450)
T ss_dssp             EEEEECCGGGCE
T ss_pred             EEEEEeEhhhCC
Confidence            2   56677655

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.50  E-value=1.8e-13  Score=82.14  Aligned_cols=78  Identities=17%  Similarity=0.285  Sum_probs=57.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.|.|.|++ ++..+        ....++.+...+ ...+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        29 ~~~~l~C~~~G~P~p~v~W~k-~g~~l--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   98 (107)
T 3knb_B           29 AEAELKCVVLGEPPPVVVWEK-GGQQL--------AASERLSFPADG-AEHGLLLTAALPTDAGVYVCRARNAAGEAYAA   98 (107)
T ss_dssp             SCEEEEEEEEEESCCEEEEEE-TTEEC--------CCCSSEECCEET-TEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEEEecCCEEEEEE-Ccccc--------cceeeEEEeecC-ceEEEEEecCChhhCEEEEEEEEECCCEEEEE
Confidence            468889999999999999999 56554        233455444332 3458999999999999999999876 445556


Q ss_pred             EEEEEEcCC
Q psy16425         82 GYLEVVVPP   90 (163)
Q Consensus        82 ~~l~v~~~p   90 (163)
                      +.|.|..+|
T Consensus        99 ~~l~V~~pP  107 (107)
T 3knb_B           99 AAVTVLEPP  107 (107)
T ss_dssp             EEEEEEC--
T ss_pred             EEEEEEcCC
Confidence            777777654

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.49  E-value=1.9e-12  Score=86.37  Aligned_cols=143  Identities=17%  Similarity=0.220  Sum_probs=85.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c-e-EEeeeeeEEecCCeEEEEeC--CCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q-T-ILTIQTHVITKNHRIGVTHS--ETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~-~-~~~~~~~~~~~~~r~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..+.|.|...+.+ +.|.||+.+. . . ............+|+.+..+  ..++++|.|.+++.+|+|.|.|.+.+...
T Consensus        17 ~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   95 (207)
T 1ypz_E           17 TDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHI   95 (207)
T ss_dssp             CCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBCC
T ss_pred             CcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCCc
Confidence            4678888876554 4899999642 1 1 11111111224577887765  24678999999999999999999965421


Q ss_pred             ------------ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCC-CeEEEEECCeEEEecCCce--EE
Q psy16425         78 ------------KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPK-PNITWRREGGELIAQGNGQ--ED  141 (163)
Q Consensus        78 ------------~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~~~~~~~--~~  141 (163)
                                  ......|.|...+.....   +...+..+ .+.|.|.+.+ .|. +.+.|+++ ..+.......  ..
T Consensus        96 ~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~---P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~  170 (207)
T 1ypz_E           96 SEGYELGTDKLVFGQGTQVTVEPKSQPPAK---PSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISP  170 (207)
T ss_dssp             CTTCCCCCCCCEECCCEEEEEECCCCCCCC---CEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEEEECCCEEEECT
T ss_pred             ccccccccceeeecCccEEEEccCCCCCCC---CeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCccceEEcC
Confidence                        123356777643222111   12233222 3699999987 454 79999999 6654332211  23


Q ss_pred             eceEEEEcch
Q psy16425        142 FPFFKRTKKK  151 (163)
Q Consensus       142 ~~~l~i~~v~  151 (163)
                      ++.+.+....
T Consensus       171 ~g~y~~~~~~  180 (207)
T 1ypz_E          171 SGKYSAVKLG  180 (207)
T ss_dssp             TSSEEEEECE
T ss_pred             CCcEEEEEee
Confidence            3556665443

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.49  E-value=1.6e-12  Score=96.76  Aligned_cols=126  Identities=20%  Similarity=0.331  Sum_probs=81.3

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceE---Eeee--e----eEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTI---LTIQ--T----HVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~---~~~~--~----~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.+  .+.|.||+.. +...   ....  .    ......+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        17 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   96 (475)
T 1iga_A           17 ASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYY   96 (475)
T ss_pred             CCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCChhhCEEEE
Confidence            4688888877654  6789999953 2211   1110  0    011234677776553 35679999999999999999


Q ss_pred             EEEEeCCC-------ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-C-eEEEEECCeE
Q psy16425         70 CQVNTDPM-------KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-P-NITWRREGGE  131 (163)
Q Consensus        70 C~~~~~~~-------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p-~v~W~~~~~~  131 (163)
                      |.+.+...       ....+.|.|..    +|.+...+.   ..+.+|+.+.|.|.+.|. |. | .+.|++++..
T Consensus        97 C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~---~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~  169 (475)
T 1iga_A           97 CARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL---CSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQG  169 (475)
T ss_pred             EEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc---cccCCCCeEEEEEEEeeecCCCceEEEEcCCCcc
Confidence            99966531       12334566653    233332221   123689999999999986 65 5 8999998753

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.49  E-value=7.7e-13  Score=90.12  Aligned_cols=126  Identities=13%  Similarity=0.272  Sum_probs=77.0

Q ss_pred             ceeEEEeeeeccC----CCEEEEEEcCC-ce---EEeee-------e-e-EE--ecCCeEEEEeCC-CceEEEEEcccCC
Q psy16425          3 ARMLIEIGEMLMA----ESTVAWLRVDT-QT---ILTIQ-------T-H-VI--TKNHRIGVTHSE-TKAWYLHIREVRE   62 (163)
Q Consensus         3 ~~~~~~~~~~~~~----~~~i~W~k~~~-~~---~~~~~-------~-~-~~--~~~~r~~~~~~~-~~~~~L~i~~v~~   62 (163)
                      ..+.|.|...+.+    ...|.||+... ..   +....       . . ..  ...+|+.+..+. .+.++|.|.+++.
T Consensus        16 ~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   95 (239)
T 3tv3_H           16 ETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKLNSVTA   95 (239)
T ss_dssp             SCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEEECCCCh
Confidence            4688888877655    45899998532 11   11111       0 0 01  124678776543 4678899999999


Q ss_pred             CCCeEEEEEEEeCC--------------CceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-e
Q psy16425         63 SDRGWYMCQVNTDP--------------MKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-N  122 (163)
Q Consensus        63 ~d~G~Y~C~~~~~~--------------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~  122 (163)
                      +|+|.|.|.+.+..              .......|.|..    .|.+...+.  ...+..|+.+.|.|.+.+ .|.+ .
T Consensus        96 ~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~--~~~~~~g~~v~l~C~~~~~~p~~~~  173 (239)
T 3tv3_H           96 ADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAP--SSKSTSGGTAALGCLVKDYFPEPVT  173 (239)
T ss_dssp             GGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECC--CCCC--TTEEEEEEEEEEEBSSCCE
T ss_pred             hhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECC--ChhhccCCcEEEEEEEeeEeCCCeE
Confidence            99999999995431              011223455542    233332222  223446999999999987 5544 4


Q ss_pred             EEEEECCe
Q psy16425        123 ITWRREGG  130 (163)
Q Consensus       123 v~W~~~~~  130 (163)
                      +.|++++.
T Consensus       174 v~W~~~g~  181 (239)
T 3tv3_H          174 VSWNSGAL  181 (239)
T ss_dssp             EEEGGGTB
T ss_pred             EEEEECCc
Confidence            88999886

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.47  E-value=1.7e-13  Score=94.41  Aligned_cols=107  Identities=16%  Similarity=0.185  Sum_probs=79.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe-C-CCce-
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT-D-PMKS-   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~-~-~~~~-   79 (163)
                      ..+.|.|...  |.+.|.|   ++..+.        ..+         ....|.|..+..+|.|.|+|.+.+ . +... 
T Consensus       114 ~~v~l~C~~~--p~~~i~W---~g~~~~--------~~~---------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~  171 (265)
T 2oz4_A          114 TEVTVKCEAH--PRAKVTL---NGVPAQ--------PLG---------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIH  171 (265)
T ss_dssp             CEEEEEEECC--TTSEEEE---SSCSSS--------CCS---------SEECCEEECCGGGTTEEEEEEEEEECSSSEEE
T ss_pred             CcEEEEEEcc--CCCEEEE---CCEEcc--------CCC---------CcEEEEEccccccCCceEEEEEEcCCCCCccc
Confidence            3577788776  8899999   344431        011         123688999999999999999964 3 3333 


Q ss_pred             --EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeE
Q psy16425         80 --QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGE  131 (163)
Q Consensus        80 --~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~  131 (163)
                        ..+.|.|..+|.+..........+.+|+.+.|.|.+.|+|.|.+.|++++..
T Consensus       172 ~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~  225 (265)
T 2oz4_A          172 KNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF  225 (265)
T ss_dssp             EEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTE
T ss_pred             ccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcc
Confidence              5567888888776554333456788999999999999999999999999984

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.47  E-value=1.7e-12  Score=89.05  Aligned_cols=126  Identities=14%  Similarity=0.309  Sum_probs=75.8

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCC-ceEEee------ee---eEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDT-QTILTI------QT---HVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~-~~~~~~------~~---~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+  .+...|.||+... ......      +.   ......+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        15 ~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~   94 (248)
T 3u2s_H           15 SSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRVEDTATYF   94 (248)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCHHHCEEEE
Confidence            46888888754  4567899998542 211111      00   001234788876654 46789999999999999999


Q ss_pred             EEEEeCC-----------------------CceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEecc-CC-C
Q psy16425         70 CQVNTDP-----------------------MKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG-SP-K  120 (163)
Q Consensus        70 C~~~~~~-----------------------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~  120 (163)
                      |.+.+..                       .......+.|..    .|.+...+.  ...+..|+.+.|.|.+.+ .| .
T Consensus        95 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~--~~~~~~g~~~~L~C~~~~~~P~~  172 (248)
T 3u2s_H           95 CVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAP--SSKSTSGGTAALGCLVKDYFPEP  172 (248)
T ss_dssp             EEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECC--C------CEEEEEEEEEEEBSSC
T ss_pred             EEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCC--CccccCCCcEEEEEEEeeEECCC
Confidence            9996421                       112234555552    233332221  223456999999999987 55 4


Q ss_pred             CeEEEEECCe
Q psy16425        121 PNITWRREGG  130 (163)
Q Consensus       121 p~v~W~~~~~  130 (163)
                      +.+.|++++.
T Consensus       173 ~~v~W~~~g~  182 (248)
T 3u2s_H          173 VTVSWNSGAL  182 (248)
T ss_dssp             CEEEEGGGTB
T ss_pred             eEEEEeECCc
Confidence            5799999885

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.46  E-value=9.4e-14  Score=102.13  Aligned_cols=150  Identities=17%  Similarity=0.242  Sum_probs=93.3

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcC-CceEEeeee---------eEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVD-TQTILTIQT---------HVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~-~~~~~~~~~---------~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.  +.+.|.||+.+ +........         ......+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        15 ~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   94 (434)
T 1igy_B           15 ASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSDDSAVYY   94 (434)
T ss_dssp             CCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGGGCSEEC
T ss_pred             CCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChHHCEEEE
Confidence            468888888765  37789999964 222211000         001124677765542 24568999999999999999


Q ss_pred             EEEEeC-CCceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEEE--e-----c
Q psy16425         70 CQVNTD-PMKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGELI--A-----Q  135 (163)
Q Consensus        70 C~~~~~-~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~--~-----~  135 (163)
                      |.+.+. ......+.|.|..    +|.+...+.  ...+.+|+.+.|.|.+.|. |.| .+.|++++..+.  .     .
T Consensus        95 C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~  172 (434)
T 1igy_B           95 CVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAP--GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQ  172 (434)
T ss_dssp             CCCSSSSCCCCCCEECEECCSCCBCCCEEEECC--CCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEEC
T ss_pred             EEEEccccccCCceEEEEccCCCCCCeEEEcCC--ccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceec
Confidence            999654 2233445666653    343332222  1234689999999999885 776 999999987421  0     0


Q ss_pred             CCceEEeceEEEEcchhhh
Q psy16425        136 GNGQEDFPFFKRTKKKKKK  154 (163)
Q Consensus       136 ~~~~~~~~~l~i~~v~~~~  154 (163)
                      .......+.|+|.++..+|
T Consensus       173 ~~~~~~~s~L~i~~~~~~d  191 (434)
T 1igy_B          173 SDLYTLSSSVTVPSSPRPS  191 (434)
T ss_dssp             SSCEEEEEEEEEETTTTTS
T ss_pred             CCcEEEEEEEEEcchhcCC
Confidence            0111223568888887665

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.46  E-value=6.1e-13  Score=90.23  Aligned_cols=122  Identities=18%  Similarity=0.230  Sum_probs=73.9

Q ss_pred             ceeEEEeeeecc-CC-C-EEEEEEcCCceE-EeeeeeE-EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLM-AE-S-TVAWLRVDTQTI-LTIQTHV-ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~-~-~i~W~k~~~~~~-~~~~~~~-~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..+.|.|...+. |. + .|.|++ ++..+ ....... ...++.+..      ...|.|.+++.+|+|.|+|.+.+...
T Consensus        29 ~~v~L~C~~~g~~P~~p~~v~W~~-~g~~~~~~~~~~~~~~~~g~~~~------~s~L~I~~~~~~D~g~Y~C~~~~~~~  101 (231)
T 2w59_A           29 LDAKLRCLVVNLPSDSSLSVTWTR-EKSGNLRPDPMVLQEHFNGTYSA------SSAVPVSTQDWLSGERFTCTVQHEEL  101 (231)
T ss_dssp             CCCEEEEEEEEESCCTTCEEEEEC-SSSSCCCCCCCEEEECTTSCEEE------EEEEECCHHHHHTTCCEEEEEECTTC
T ss_pred             CceEEEEEEeCccCCCCeEEEEEc-CCeeccccccccceECCCCcEEE------EEEEEecchhccCCCEEEEEEEcCCC
Confidence            367888888774 53 4 999998 55444 1111110 112233321      23799999999999999999976532


Q ss_pred             ceEeEEEEEE------cCCcccccCCCCcEEEeCCCcEEEEeEeccC-C-CCeEEEEECCeEEEe
Q psy16425         78 KSQVGYLEVV------VPPDILDYPTSTDMVIREGSNVTLKCAASGS-P-KPNITWRREGGELIA  134 (163)
Q Consensus        78 ~~~~~~l~v~------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~p~v~W~~~~~~~~~  134 (163)
                       .....+.+.      .+|.+...+.... . ..|+.+.|.|.+.|. | .+.+.|+++|..+..
T Consensus       102 -~~~~~~~v~~~~~~~~~P~v~v~~~~~~-~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  163 (231)
T 2w59_A          102 -PLPLSKSVYRNTGPTTPPLIYPFAPHPE-E-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPA  163 (231)
T ss_dssp             -SSCEEEEECCCCSCCBCCEEEEECCCGG-G-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             -CCceEEEEecCCCCCcCCEEEEeCCCHH-H-hccCceEEEEEEEeccCCCcEEEEEECCEECCC
Confidence             223334443      2343332221111 1 235679999999985 5 368999999988744

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.45  E-value=1.5e-12  Score=77.73  Aligned_cols=87  Identities=21%  Similarity=0.376  Sum_probs=64.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|...+.|.+.|.|++.+...+. ..........|+.+......+.+|.|.+++.+|+|.|+|.+.+.+.....+
T Consensus        22 ~~v~L~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~  100 (108)
T 3m45_A           22 GTAILTCRVDQNDNTSLQWSNPAQQTLY-FDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKA  100 (108)
T ss_dssp             SCEEEEEEESSCSSCCEEEECTTCCEEE-ETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEE
T ss_pred             CcEEEEeEEcCCCccEEEEEcCCCceEE-EcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEcCCCcEEEE
Confidence            4688999999999999999995432332 222223345677776555567799999999999999999997755556667


Q ss_pred             EEEEEcCC
Q psy16425         83 YLEVVVPP   90 (163)
Q Consensus        83 ~l~v~~~p   90 (163)
                      .|.|..+|
T Consensus       101 ~L~V~~~P  108 (108)
T 3m45_A          101 YLTVLGVP  108 (108)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            78777654

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.45  E-value=3.1e-12  Score=86.55  Aligned_cols=148  Identities=16%  Similarity=0.253  Sum_probs=87.2

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCC-ceEE---eee------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDT-QTIL---TIQ------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~-~~~~---~~~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+  .....|.||+... ....   ...      .......+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~   95 (230)
T 3n9g_H           16 ASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSEDTAVYY   95 (230)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChhhCEEEE
Confidence            46888888754  4567899998532 1111   110      0011235688877655 46788999999999999999


Q ss_pred             EEEEeCC---------CceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEecc-CC-CCeEEEEECCeEEEe
Q psy16425         70 CQVNTDP---------MKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG-SP-KPNITWRREGGELIA  134 (163)
Q Consensus        70 C~~~~~~---------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~p~v~W~~~~~~~~~  134 (163)
                      |.+.+..         .......|.|..    +|.+...+.  ...+.+|+.+.|.|.+.+ .| .+.+.|  ++..+..
T Consensus        96 C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~--~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~  171 (230)
T 3n9g_H           96 CARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAP--SSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTS  171 (230)
T ss_dssp             EEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECC--CCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTBCT
T ss_pred             EEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCC--CccccCCCCEEEEEEEEeEECCCEEEEE--CCcccCC
Confidence            9996532         112334566642    233332221  222457999999999987 45 346999  5443311


Q ss_pred             ----------cCCceEEeceEEEEcchhhh
Q psy16425        135 ----------QGNGQEDFPFFKRTKKKKKK  154 (163)
Q Consensus       135 ----------~~~~~~~~~~l~i~~v~~~~  154 (163)
                                .+........|+|..+..+|
T Consensus       172 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~  201 (230)
T 3n9g_H          172 GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT  201 (230)
T ss_dssp             TEEECCCEECTTSCEEEEEEEEEESTTBTT
T ss_pred             CeEeCCceECCCCCEEEEEEEEECHHHcCC
Confidence                      01111122467777776655

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.45  E-value=1.5e-13  Score=101.23  Aligned_cols=145  Identities=10%  Similarity=0.079  Sum_probs=86.8

Q ss_pred             eeEEEeeeecc-CCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc-eE
Q psy16425          4 RMLIEIGEMLM-AES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK-SQ   80 (163)
Q Consensus         4 ~~~~~~~~~~~-~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~   80 (163)
                      .+.|.|...+. |.+ .|.|++.+ ..+...........+.+...      ..|.|.++..+| |.|+|.+.+.... ..
T Consensus       140 ~v~L~C~~~g~~P~p~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~  211 (444)
T 1igt_B          140 SVTLGCLVKGYFPEPVTLTWNSGS-LSSGVHTFPAVLQSDLYTLS------SSVTVTSSTWPS-QSITCNVAHPASSTKV  211 (444)
T ss_dssp             CEEEEEEEEEEBSSCCEEEEGGGT-BCTTEEECCCEEETTEEEEE------EEEEECSTTTTT-SCCEEEEEETTTTEEE
T ss_pred             cEEEEEEEcceeCCCcEEEEecCC-CCCCeEecCccccCCcEEEE------EEEEEchhhcCC-CeEEEEEEeCCCCcce
Confidence            57788888774 666 99999954 33110000000111333322      279999999999 9999999776432 22


Q ss_pred             eEEEEE------------------EcCCcccccCCCCcEEEeCCCcEEEEeEeccCC----CCeEEEEECCeEEEecCCc
Q psy16425         81 VGYLEV------------------VVPPDILDYPTSTDMVIREGSNVTLKCAASGSP----KPNITWRREGGELIAQGNG  138 (163)
Q Consensus        81 ~~~l~v------------------~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p----~p~v~W~~~~~~~~~~~~~  138 (163)
                      ...+.+                  ..+|.+...++.....+.+|+++.|.|.+.|.|    .+.+.|++++..+......
T Consensus       212 ~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~  291 (444)
T 1igt_B          212 DKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ  291 (444)
T ss_dssp             EEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCB
T ss_pred             EEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccc
Confidence            223322                  113333122221111147899999999999874    3589999999876432211


Q ss_pred             e---------EEeceEEEEcchhhhHh
Q psy16425        139 Q---------EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       139 ~---------~~~~~l~i~~v~~~~~~  156 (163)
                      .         ...+.|.|.++..+|.+
T Consensus       292 ~~~~~~~~~~~~~~~L~I~~v~~~d~G  318 (444)
T 1igt_B          292 THREDYNSTLRVVSALPIQHQDWMSGK  318 (444)
T ss_dssp             CCEEECSSSEEEEEEEECCHHHHHTTC
T ss_pred             cceeCCCCcEEEEEEEEEcHHHhccCC
Confidence            1         23357999999988865

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.44  E-value=2.6e-13  Score=92.65  Aligned_cols=122  Identities=16%  Similarity=0.198  Sum_probs=74.7

Q ss_pred             ceeEEEeeeecc---CCC-EEEEEEcCCceEEeeee--eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLM---AES-TVAWLRVDTQTILTIQT--HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~---~~~-~i~W~k~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .++.|.|...+.   |.+ .|.||+.+ ..+.....  ......+++.      ....|.|.+++.+|+|.|+|.+.+..
T Consensus        33 ~~v~L~C~~~g~~~~P~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~------~~s~L~I~~~~~~D~g~Y~C~~~~~~  105 (239)
T 1i1c_A           33 LTPKVTCVVVDISQNDPEVRFSWFIDD-VEVHTAQTHAPEKQSNSTLR------SVSELPIVERDWLNGKTFKCKVNSGA  105 (239)
T ss_dssp             SCCEEEEEEEEECTTCCCCEEEEEESS-CEECCCEECCCEECTTSCEE------EEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             CcEEEEEEEecCccCCCCCEEEEEECC-ccccCcccccceEcCCCcEE------EEEEEEEEhhHccCCCeEEEEEeccc
Confidence            367888888776   665 89999954 33321110  0001112222      22479999999999999999997653


Q ss_pred             Cc-eEeEEE----EEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425         77 MK-SQVGYL----EVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus        77 ~~-~~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      .. .....+    .+..+|.+...+...  ....|+.+.|.|.+.| +|+ +.+.|+++|..+.
T Consensus       106 ~~~~~~~~v~~~~~~~~~P~v~v~~~~~--~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  167 (239)
T 1i1c_A          106 FPAPIEKSISKPEGTPRGPQVYTMAPPK--EEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQE  167 (239)
T ss_dssp             SSSCEEEEECCCSSCCBCCEEEEECCCG--GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             CCCCcEEEEecCCCCCcCCEEEEECCCh--HHhcCCcEEEEEEEeeeECCCeEEEEEECCEECC
Confidence            32 122222    223455544333211  1234788999999998 555 4799999998763

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.43  E-value=2.2e-12  Score=88.82  Aligned_cols=128  Identities=16%  Similarity=0.149  Sum_probs=82.3

Q ss_pred             ceeEEEeeeec-cCCC--EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEccc---CCCCCeE--EEEEEEe
Q psy16425          3 ARMLIEIGEML-MAES--TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREV---RESDRGW--YMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~--~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v---~~~d~G~--Y~C~~~~   74 (163)
                      ..+.|.|...+ .|.+  .|.|++ ++..+..          ++  ...+.   .+.+..+   +.+|+|.  |+|.+.+
T Consensus        19 ~~v~l~C~~~g~~p~p~~~v~W~k-~~~~l~~----------~~--~~~~~---~~~~~~~~~~~~~d~g~g~Y~C~a~n   82 (265)
T 2oz4_A           19 TQGTVVCSLDGLFPVSEAQVHLAL-GDQRLNP----------TV--TYGND---SFSAKASVSVTAEDEGTQRLTCAVIL   82 (265)
T ss_dssp             EEEEEEEEEESCSCGGGCEEEEEE-TTEECCC----------EE--EECSS---EEEEEEEEEECGGGCEEEEEEEEEEE
T ss_pred             CCEEEEEEccCCCCCcceEEEEEe-CCEECCc----------eE--eeCCC---eEEEEeecccccccCCcceEEEEEec
Confidence            46788898887 6666  999999 5544321          11  11111   3444444   7888885  9999977


Q ss_pred             C-CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhh
Q psy16425         75 D-PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKK  153 (163)
Q Consensus        75 ~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~  153 (163)
                      . +.....+.|.|...|......  ....+.+|+.+.|.|.+.  |.|.+.|  +|..+...    ...+.|.|..+..+
T Consensus        83 ~~~~~~~~~~l~V~~~p~p~~~~--~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~----~~~~~l~i~~~~~~  152 (265)
T 2oz4_A           83 GNQSQETLQTVTIYSFPAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL----GPRAQLLLKATPED  152 (265)
T ss_dssp             TTEEEEEEEEEEEECCCCCEEEE--SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCC----SSEECCEEECCGGG
T ss_pred             CCCCcEEEEEEEEeCCCCceeec--CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCC----CCcEEEEEcccccc
Confidence            6 444556778887644322222  244577899999999998  8999999  76665211    12245667777666


Q ss_pred             hHh
Q psy16425        154 KKK  156 (163)
Q Consensus       154 ~~~  156 (163)
                      |.+
T Consensus       153 ~~g  155 (265)
T 2oz4_A          153 NGR  155 (265)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            654

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.43  E-value=1.4e-12  Score=80.13  Aligned_cols=91  Identities=18%  Similarity=0.228  Sum_probs=63.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|...+.|.+.|.|++.++..+.. ........+|+.+.......++|.|.+++.+|+|.|+|.+.+.+.....+
T Consensus        17 ~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~g~~~~~~   95 (124)
T 3rbg_A           17 QTLTLKCVTSLRKNSSLQWLTPSGFTIFL-NEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEV   95 (124)
T ss_dssp             SCEEEEEECCCCTTCEEEEECTTSCEEEE-TTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESSSEEEEEE
T ss_pred             CCEEEEeEEeccCCCEEEEECCCCeEEEE-eccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcCCCCcEEE
Confidence            46889999999999999999855444322 22222345566665444456799999999999999999997765556677


Q ss_pred             EEEEEcCCcccc
Q psy16425         83 YLEVVVPPDILD   94 (163)
Q Consensus        83 ~l~v~~~p~~~~   94 (163)
                      .|.|..+|....
T Consensus        96 ~l~V~~~P~~~~  107 (124)
T 3rbg_A           96 KVIVLATMKGEF  107 (124)
T ss_dssp             EEEEECC-----
T ss_pred             EEEEEeCCCCCc
Confidence            888888776443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.43  E-value=6.4e-13  Score=95.79  Aligned_cols=98  Identities=20%  Similarity=0.262  Sum_probs=53.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.+.|...+ |.+.|.|++.++..+...     ....|+.+ ..+    +|.|.+++.+|+|.|+|.+.+. +.....
T Consensus       262 ~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~-----~~~~r~~~-~~~----~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~  330 (361)
T 2xot_A          262 DTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQ-----GSNGSVSV-RNG----DLFFKKVQVEDGGVYTCYAMGETFNETLS  330 (361)
T ss_dssp             CCEEECCCCSS-TTCEEEEECTTSCBCCSC-----CSSSSEEE-ETT----EEEESSCCTTSCEEEEEEEECSSCEEEEE
T ss_pred             CeEEEEeEeeC-CCCeEEEEeCCCeeEeec-----ccCCceEe-ecC----eEEEeecCcccCEEEEEEEecCCCccEEE
Confidence            36788898888 999999999554432110     12335666 444    8999999999999999999776 333444


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEE
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNIT  124 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~  124 (163)
                      +.+.|...+             .+|+.+.|.|.+.|.|.|.|.
T Consensus       331 ~~l~V~~~~-------------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          331 VELKVYNFT-------------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EEEEEESSC-------------CC-------------------
T ss_pred             EEEEEEeee-------------ccCCceEEEEEeCCCCCCccc
Confidence            555553321             458899999999999998763

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.43  E-value=1.4e-12  Score=86.94  Aligned_cols=122  Identities=16%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             ceeEEEeeeeccC----CCEEEEEEcCCceEEeeee--eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMA----ESTVAWLRVDTQTILTIQT--HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~----~~~i~W~k~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .++.|.|...+.+    .+.|.|++ ++..+.....  ......+.+.+..      .|.|......|+|.|+|.+.+..
T Consensus        19 ~~v~L~C~~~g~~p~~~~~~v~W~k-~~~~~~~~~~~~~~~~~~g~~~~~~------~l~i~~~d~~d~g~Y~C~a~n~~   91 (207)
T 1l6x_A           19 RTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVHNAKTKPREEQYNSTYRVVS------VLTVLHQDWLNGKEYKCKVSNKA   91 (207)
T ss_dssp             SCCEEEEEEEEECSSSCCCEEEEEE-TTEEECCCEECCCEECTTSCEEEEE------EEECCHHHHHTTCCEEEEEECTT
T ss_pred             CceEEEEEEecccCCCCCeEEEEEE-CCccccCcccCCceeccCCcEEEEE------EEEEEHHHccCCceEEEEEEcCc
Confidence            4678888887764    35999999 5544421110  0001112221111      34444444555999999997663


Q ss_pred             Cce-EeEEE----EEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCeEEE
Q psy16425         77 MKS-QVGYL----EVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGGELI  133 (163)
Q Consensus        77 ~~~-~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~  133 (163)
                      ... ....+    .+..+|.+...+.. .. ...|+.+.|.|.+.|. |+ +.+.|+++|..+.
T Consensus        92 ~~~~~~~~v~~~~~~~~~P~v~~~~~~-~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  153 (207)
T 1l6x_A           92 LPAPIEKTISKAKGQPREPQVYTLPPS-RD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  153 (207)
T ss_dssp             SSSCEEEEECCCCSCCBCCEEEEECCC-GG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCcceEEEeccCCCCCcCCEEEEECCC-hH-HhcCCcEEEEEEEeCeECCCeEEEEEECCeecc
Confidence            322 22233    22344554433221 11 1246669999999984 54 3899999998764

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.42  E-value=1.1e-12  Score=92.92  Aligned_cols=144  Identities=11%  Similarity=0.090  Sum_probs=85.8

Q ss_pred             eeEEEeeeecc-C-CCEEEEEEcCCceEEeeee--eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCce
Q psy16425          4 RMLIEIGEMLM-A-ESTVAWLRVDTQTILTIQT--HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKS   79 (163)
Q Consensus         4 ~~~~~~~~~~~-~-~~~i~W~k~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~   79 (163)
                      .+.|.|...+. | .+.|.|++ ++..+.....  .....++++...      ..|.|.++...|+|.|+|.+.+... .
T Consensus        26 ~v~L~C~~~g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~~g~~~~~------s~l~i~~~~~~d~g~Y~C~a~n~~~-~   97 (323)
T 2wqr_A           26 TIQLLCLVSGYTPGTIQITWLE-DGQVMDVDLSTASTTQEGELASTQ------SELTLSQKHWLSDRTYTCQVTYQGH-T   97 (323)
T ss_dssp             EEEEEEEEEEECCCCEEEEEEE-TTEECCGGGEEEEEEEETTEEEEE------EEEEEEHHHHHTTCCEEEEEEETTE-E
T ss_pred             cEEEEEEEeCeECCCeEEEEEE-CCEEcccceecCCcCccCCcEEEE------EEEEEcHHHcCCCCcEEEEEEeCCC-C
Confidence            67888888775 3 57999999 5555421100  011113333322      2688998888999999999977532 2


Q ss_pred             EeEEEEEE-----cCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC---eEEEEECCeEEEecCC---------ceEE
Q psy16425         80 QVGYLEVV-----VPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP---NITWRREGGELIAQGN---------GQED  141 (163)
Q Consensus        80 ~~~~l~v~-----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p---~v~W~~~~~~~~~~~~---------~~~~  141 (163)
                      ....+.+.     ..|.+...++ ....+.+|+++.|.|.+.+. |.|   .+.|+++++.+.....         ....
T Consensus        98 ~~~~~~~~~~~~~~~p~v~~~~p-~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~  176 (323)
T 2wqr_A           98 FEDSTKKCADSNPRGVSAYLSRP-SPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTV  176 (323)
T ss_dssp             EEEEECCCCCSSGGGCEEEECCC-CHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEE
T ss_pred             cceeeecCCCCCCCCCEEEEcCC-CHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEE
Confidence            22222210     1222222121 12346689999999999875 566   8999997543322111         1123


Q ss_pred             eceEEEEcchhhhHh
Q psy16425        142 FPFFKRTKKKKKKKK  156 (163)
Q Consensus       142 ~~~l~i~~v~~~~~~  156 (163)
                      .+.|+|.++..+|.+
T Consensus       177 ~~~L~I~~~~~~D~G  191 (323)
T 2wqr_A          177 TSTLPVGTRDWIEGE  191 (323)
T ss_dssp             EEEEECCHHHHHTTC
T ss_pred             EEEEEECHHHccCCC
Confidence            457899999988865

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.42  E-value=9.7e-14  Score=96.59  Aligned_cols=133  Identities=16%  Similarity=0.146  Sum_probs=87.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.    |.|++.. ...             ..... .....+|.|.+++.+|+|.|+|.+.+. +.....
T Consensus        20 ~~v~L~C~~~~~----v~W~~~~-~~~-------------~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~   80 (292)
T 4dkd_C           20 ATVTLRCVGNGS----VEWDGPP-SPH-------------WTLYS-DGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA   80 (292)
T ss_dssp             CCEEEEEECSSC----CCBCCCC-CSS-------------CEECC-BTTEEEEEESSCCGGGCSCEEECCCC----CCEE
T ss_pred             CcEEEEEcCCCc----eEEccCC-CCc-------------eEEec-cCceEEEEEcccccccCEEEEEEEccCCCCcceE
Confidence            467888877663    8899632 211             11111 112348999999999999999999654 444666


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCC--CeEEEEECCeEEEecCC-ce-EEeceEEEEcchhhhHh
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPK--PNITWRREGGELIAQGN-GQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~~~~~~~~~~-~~-~~~~~l~i~~v~~~~~~  156 (163)
                      +.|.|..+|....... ....+.+|+++.|.|.+.+ |.  +.+.|+++++....... .. ...+.|.|.+++.+|.+
T Consensus        81 ~~l~V~~~~~~~~~~~-~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  157 (292)
T 4dkd_C           81 IHLYVKDPARPWNVLA-QEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQ  157 (292)
T ss_dssp             ECCEECCSSCCEEESC-SEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCS
T ss_pred             EEEEEcCccccccccC-CeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCe
Confidence            6777777665432222 3677889999999999987 54  78999998544332222 21 13345899999888875

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.42  E-value=2.1e-13  Score=94.87  Aligned_cols=131  Identities=13%  Similarity=0.134  Sum_probs=82.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCce--
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKS--   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~--   79 (163)
                      ..+.|.|... .|.+.+.|++.+ +..+.          ..  ....   . .+.    ...|+|.|+|.+.+.....  
T Consensus       111 ~~v~l~C~~~-~p~~~v~w~~~~~~~~~~----------~~--~~~~---~-~~~----~~~d~G~Y~C~a~n~~~~~~s  169 (289)
T 3mjg_X          111 TEITIPCRVT-DPQLVVTLHEKKGDVALP----------VP--YDHQ---R-GFS----GIFEDRSYICKTTIGDREVDS  169 (289)
T ss_dssp             CCEEECCCBS-CTTSCEEEEESSCCSCCC----------CC--EETT---T-EEE----ECCCSSEEEEEEEETTEEEEC
T ss_pred             CeEEEEeEcC-CCCceEEEEeCCCCCccc----------ee--ecCC---c-Cee----eeccCcEEEEEEEeCCceeee
Confidence            3577788877 778899999954 22221          00  0000   0 111    3679999999997653322  


Q ss_pred             EeEEEEEEc--CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCC---------ceEEeceEEEE
Q psy16425         80 QVGYLEVVV--PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN---------GQEDFPFFKRT  148 (163)
Q Consensus        80 ~~~~l~v~~--~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~---------~~~~~~~l~i~  148 (163)
                      ....+.+..  +|.+...+.  ...+.+|+++.|.|.+.+.|.|.+.|++++........         .......|.|.
T Consensus       170 ~~~~l~v~~~~~p~i~~~~~--~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~  247 (289)
T 3mjg_X          170 DAYYVYRLQVSSINVSVNAV--QTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIP  247 (289)
T ss_dssp             CCEEEEECCCCCCCCEEEES--CSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEES
T ss_pred             eeEEEEecCCCCCCcEEeCC--cceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEc
Confidence            233455554  444444332  35688999999999999999999999976543211111         12345789999


Q ss_pred             cchhhhHh
Q psy16425        149 KKKKKKKK  156 (163)
Q Consensus       149 ~v~~~~~~  156 (163)
                      +++.+|.+
T Consensus       248 ~v~~~D~G  255 (289)
T 3mjg_X          248 SAELEDSG  255 (289)
T ss_dssp             SCCSSCCE
T ss_pred             ccChhhCc
Confidence            99998875

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.40  E-value=3.4e-12  Score=77.58  Aligned_cols=82  Identities=20%  Similarity=0.371  Sum_probs=62.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.       ....++.+.....+..+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        31 ~~v~L~C~~~g~p~p~v~W~k-~~~~~~-------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  102 (116)
T 2kkq_A           31 DSVKLECQISAIPPPKLFWKR-NNEMVQ-------FNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCN  102 (116)
T ss_dssp             EEEEEEEEBCCBSCCEEEEEE-TTEECC-------CCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEeccCCCEEEEEE-CCEECc-------CCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEE
Confidence            468899999999999999999 554432       12356666666556678999999999999999999776 444556


Q ss_pred             EEEEEEcCCcc
Q psy16425         82 GYLEVVVPPDI   92 (163)
Q Consensus        82 ~~l~v~~~p~~   92 (163)
                      +.|.|..+|..
T Consensus       103 ~~l~V~~~p~~  113 (116)
T 2kkq_A          103 TRLDVTARPNQ  113 (116)
T ss_dssp             EEEEEECCSCC
T ss_pred             EEEEEeCCCCC
Confidence            67777776643

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.1e-12  Score=78.57  Aligned_cols=92  Identities=22%  Similarity=0.271  Sum_probs=64.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.       ....++.....+    +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        24 ~~v~l~C~~~g~p~p~i~W~k-~g~~~~-------~~~~~~~~~~~~----~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (118)
T 2eo9_A           24 GTFVLSCVATGSPVPTILWRK-DGVLVS-------TQDSRIKQLENG----VLQIRYAKLGDTGRYTCIASTPSGEATWS   91 (118)
T ss_dssp             CEEEEECBCCCSSCCEEEEEE-SSSBCC-------TTSTTEEEEETT----EEEEESCCGGGCCCEEEEEECSSCEEEEE
T ss_pred             CeEEEEEEEEecCCCEEEEEE-CCEECc-------CCCCeEEEccCC----EEEEccCCcCCCEEEEEEEEcCCCcEEEE
Confidence            468899999999999999999 554442       124556555554    8999999999999999999776 444455


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCC
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREG  106 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g  106 (163)
                      +.|.|..++.....+......+.+|
T Consensus        92 ~~l~V~~~~~p~~~~~~~~~~~~~G  116 (118)
T 2eo9_A           92 AYIEVQEFGVPVQPPRPTDPNLIPS  116 (118)
T ss_dssp             CCEEEECCSCCCCCCCCCCCCCCCC
T ss_pred             EEEEEEeCCCCccCCCCCCCccCCC
Confidence            6677777655433333333344444

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.40  E-value=8e-12  Score=75.51  Aligned_cols=83  Identities=19%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.+.|.|++ ++..+        ....++.+... .....|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        23 ~~v~l~C~~~g~p~p~i~W~k-~~~~~--------~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   92 (114)
T 2cqv_A           23 ESVELFGKVTGTQPITCTWMK-FRKQI--------QESEHMKVENS-ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQ   92 (114)
T ss_dssp             CCEEEEEEEESSSSCEEEEEE-SSSBC--------CCSSSEEEEEC-SSEEEEEETTCCTTTCEEEEEEEECSSCEEECC
T ss_pred             CeEEEEEEEEcCCCCEEEEEE-CCEEC--------cCCCCEEEEEc-CCEEEEEECCCChhcCEEEEEEEEECCCcEEEE
Confidence            468899999999999999999 55544        22345555432 23558999999999999999999776 444556


Q ss_pred             EEEEEEcCCccccc
Q psy16425         82 GYLEVVVPPDILDY   95 (163)
Q Consensus        82 ~~l~v~~~p~~~~~   95 (163)
                      +.|.|...|.....
T Consensus        93 ~~l~V~~~p~~P~~  106 (114)
T 2cqv_A           93 VNLTVVDKPDPPAG  106 (114)
T ss_dssp             EEEEEECSCSCCCC
T ss_pred             EEEEEECCCCCCCC
Confidence            77888776655443

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.40  E-value=2.1e-12  Score=89.85  Aligned_cols=111  Identities=19%  Similarity=0.340  Sum_probs=71.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~   80 (163)
                      ..+.|.|...+.    |.|++ ++..+.          .+......+.....|.|.+++.+|+|.|+|.+.+...  ...
T Consensus        16 ~~v~L~C~~~~~----v~W~~-~~~~~~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   80 (289)
T 3mjg_X           16 STFVLTCSGSAP----VVWER-MSQEPP----------QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDE   80 (289)
T ss_dssp             CCEEEEEEESSC----CEEEB-TTBCCS----------EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CC
T ss_pred             CcEEEEEeccce----EEEEC-CCCCcc----------cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCc
Confidence            367888877654    89999 444431          1122222222235899999999999999999966531  223


Q ss_pred             eEEEEEEcC-CcccccCCCCc---EEEeCCCcEEEEeEeccCCCCeEEEEECC
Q psy16425         81 VGYLEVVVP-PDILDYPTSTD---MVIREGSNVTLKCAASGSPKPNITWRREG  129 (163)
Q Consensus        81 ~~~l~v~~~-p~~~~~~~~~~---~~~~~g~~~~l~C~~~~~p~p~v~W~~~~  129 (163)
                      ...+.+.+. |.....+....   ..+.+|+++.|.|.+. .|.|.++|++++
T Consensus        81 ~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~  132 (289)
T 3mjg_X           81 RKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKK  132 (289)
T ss_dssp             CEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESS
T ss_pred             EEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCC
Confidence            345555554 33333222222   6688999999999998 788899999865

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.40  E-value=2.7e-12  Score=76.01  Aligned_cols=77  Identities=14%  Similarity=0.216  Sum_probs=55.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+..      ....|+.+.... ...+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        21 ~~~~l~C~~~g~P~p~v~W~k-~g~~i~~------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   92 (100)
T 3knb_A           21 KVLTVACAFTGEPTPEVTWSC-GGRKIHS------QEQGRFHIENTD-DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT   92 (100)
T ss_dssp             SEEEEEEEEEEESCCEEEEEE-TTEECCT------TGGGTEEEEECS-SEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEEEecCCEEEEEE-CceEeee------eccceeeeeccc-ceEEEEEcCCCccCCEEEEEEEEECCCEEEEE
Confidence            468899999999999999999 5555421      122355554433 3458999999999999999999876 444455


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus        93 ~~l~V~   98 (100)
T 3knb_A           93 VNIHIR   98 (100)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            556554

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.5e-12  Score=75.54  Aligned_cols=75  Identities=13%  Similarity=0.221  Sum_probs=56.6

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeEE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGY   83 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~   83 (163)
                      .+.+.|..  .|.+.|.||| ++..+        ....|+.+...+ ...+|.|.+++.+|+|.|+|.+.|. ..+..+.
T Consensus        24 ~v~l~C~v--~p~p~v~W~k-~g~~l--------~~~~r~~i~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~-~~~~~a~   90 (100)
T 2yuz_A           24 EICLKCEI--SENIPGKWTK-NGLPV--------QESDRLKVVQKG-RIHKLVIANALTEDEGDYVFAPDAY-NVTLPAK   90 (100)
T ss_dssp             CCCEEEEC--SSCCCEEEEE-TTEEC--------CCCSSEEEEECS-SEEEEEESSCCGGGCSEEEEEESSS-CCCEEEE
T ss_pred             CEEEEEEe--CCCCeEEEEE-CCEEC--------CCCCcEEEEEeC-CEEEEEECCCChhhCEEEEEEEcCC-CeeEEEE
Confidence            46677776  7889999999 66655        234566655543 3458999999999999999999776 5567788


Q ss_pred             EEEEcCCc
Q psy16425         84 LEVVVPPD   91 (163)
Q Consensus        84 l~v~~~p~   91 (163)
                      |.|..+|.
T Consensus        91 L~V~~~P~   98 (100)
T 2yuz_A           91 VHVISGPS   98 (100)
T ss_dssp             EEEECCSC
T ss_pred             EEEeCCCC
Confidence            88887764

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.38  E-value=3.1e-12  Score=78.61  Aligned_cols=79  Identities=11%  Similarity=0.068  Sum_probs=55.5

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEE--e---C-CCceEEEEEcccCCCCCeEEEEEEEeC-C
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVT--H---S-ETKAWYLHIREVRESDRGWYMCQVNTD-P   76 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~--~---~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~   76 (163)
                      ++.+.|...+.|.|.|+|+| ++..+..        ..++...  .   . ....++|.|.+++..|+|.|+|.|.|. |
T Consensus        17 ~~~l~c~v~G~P~P~I~W~k-nG~~l~~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G   87 (126)
T 1he7_A           17 HWCIPFSVDGQPAPSLRWLF-NGSVLNE--------TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (126)
T ss_dssp             EEEEEEEECCSSCCEEEEEE-TTEECCC--------CSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             cEEEEEEEeeeCCCeEEEEE-CCEECCC--------CCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCC
Confidence            67789999999999999999 6666532        2222211  1   0 012358999999999999999999876 4


Q ss_pred             CceEeEEEEEEcCCc
Q psy16425         77 MKSQVGYLEVVVPPD   91 (163)
Q Consensus        77 ~~~~~~~l~v~~~p~   91 (163)
                      .....+.|.|...|.
T Consensus        88 ~~~~t~~l~v~~~P~  102 (126)
T 1he7_A           88 QASASIMAAFMDNPF  102 (126)
T ss_dssp             EEEEEEEECCCSCTT
T ss_pred             eEEEEEEEEEEcCCC
Confidence            445555666665553

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.38  E-value=5.5e-12  Score=93.79  Aligned_cols=124  Identities=15%  Similarity=0.141  Sum_probs=75.9

Q ss_pred             ceeEEEeeeeccCC---CEEEEEEcCCceEEeeeee-EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC-
Q psy16425          3 ARMLIEIGEMLMAE---STVAWLRVDTQTILTIQTH-VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM-   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~---~~i~W~k~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~-   77 (163)
                      ..+.|.|...+.++   +.|.| + ++......... .....+.+.      ....|.|.+++.+|+|.|+|.+.+... 
T Consensus       263 ~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~~~------~~~~L~I~~~~~~d~G~Y~C~a~n~~~~  334 (475)
T 1iga_A          263 SEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYS------VSSVLPGCAEPWNHGKTFTCTAAYPESK  334 (475)
T ss_pred             CceEEEEEEEcccCCCceEEEE-C-CCCcCCccccCceECCCCCEE------EEEEEEEchHHhccCCcEEEEEEcCCCC
Confidence            36788888877644   69999 4 33221110000 000111111      233799999999999999999976632 


Q ss_pred             ceEeEEEE---EEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCeEEEec
Q psy16425         78 KSQVGYLE---VVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGGELIAQ  135 (163)
Q Consensus        78 ~~~~~~l~---v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~~~  135 (163)
                      ......+.   +..+|.+...+.. ...+.+|+++.|.|.+.|. |+ +.+.|+++|..+...
T Consensus       335 ~~~~~~v~~~~~~~~P~v~~~~~~-~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  396 (475)
T 1iga_A          335 TPLTATLSKSGNTFRPEVHLLPPP-SEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE  396 (475)
T ss_pred             CceEEEeecCCCCCCCeEEEECCC-hHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCC
Confidence            22333342   2455655443322 2235679999999999986 43 489999999887443

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.38  E-value=6.7e-12  Score=73.79  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=54.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.        ...++.......+..+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        21 ~~v~l~C~~~g~p~p~v~W~k-~g~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~   91 (99)
T 1g1c_A           21 SDAHFRVRVVGKPDPECEWYK-NGVKIE--------RSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH   91 (99)
T ss_dssp             SCEEEEEEEEEESCCEEEEEE-TTEECC--------CCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEEEeCCCEEEEEE-CCEECC--------CCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEE
Confidence            467889999999999999999 555442        2334443333334568999999999999999999776 334444


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus        92 ~~l~V~   97 (99)
T 1g1c_A           92 AFLLVQ   97 (99)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555554

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.37  E-value=7.6e-12  Score=79.70  Aligned_cols=85  Identities=15%  Similarity=0.174  Sum_probs=60.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+        ....++.+.....+...|.|.+++..|+|.|+|.+.|. +.....
T Consensus        57 ~~v~L~C~~~g~P~p~v~W~k-~g~~~--------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  127 (154)
T 1fhg_A           57 SAARFDCKVEGYPDPEVMWFK-DDNPV--------KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT  127 (154)
T ss_dssp             SCEEEEEEEEEESCCEEEEEE-TTEEC--------CCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEEEecCCEEEEEE-CCEEC--------CCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEE
Confidence            357889999999999999999 55444        23455665554445678999999999999999999776 445566


Q ss_pred             EEEEEEcCCcccccC
Q psy16425         82 GYLEVVVPPDILDYP   96 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~   96 (163)
                      +.|.|..+|.....+
T Consensus       128 ~~l~V~~~p~~~~~~  142 (154)
T 1fhg_A          128 AELLVETMGKEGEGE  142 (154)
T ss_dssp             EEEEEECC-------
T ss_pred             EEEEEeCcCcCCCCC
Confidence            778888877665433

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.37  E-value=3.1e-11  Score=82.95  Aligned_cols=121  Identities=16%  Similarity=0.314  Sum_probs=72.4

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCC-ce---EEeee------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDT-QT---ILTIQ------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~-~~---~~~~~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+  .....+.||+... ..   +....      .......+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        39 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~  118 (256)
T 3sob_H           39 GSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYY  118 (256)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcccCEEEE
Confidence            46788888753  3457899998532 11   11111      0011234688876554 46788999999999999999


Q ss_pred             EEEEeCC------------CceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEecc-CC-CCeEEE
Q psy16425         70 CQVNTDP------------MKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG-SP-KPNITW  125 (163)
Q Consensus        70 C~~~~~~------------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~p~v~W  125 (163)
                      |.+.+.+            .......|.|..    +|.+...+.  ...+.+|+.+.|.|.+.+ .| .+.+.|
T Consensus       119 C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~~~~p~~~~v~W  190 (256)
T 3sob_H          119 CARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAP--SSKSTSGGTAALGCLVKDYFPEPVTVSW  190 (256)
T ss_dssp             EEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECC--C-----TTEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECC--CcccccCCcEEEEEEEEEEECCCeEEEE
Confidence            9996532            112233566642    233332221  223567999999999987 55 357999

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.36  E-value=9.9e-12  Score=90.06  Aligned_cols=122  Identities=13%  Similarity=0.165  Sum_probs=73.9

Q ss_pred             ceeEEEeeeecc---CC-CEEEEEEcCCceEEeeeee-EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLM---AE-STVAWLRVDTQTILTIQTH-VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~---~~-~~i~W~k~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..+.|.|...+.   |. ..|.|+++++......... .....+.+.      ....|.|.+++.+|+|.|+|.+.+...
T Consensus       184 ~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~------~~s~L~I~~~~~~D~g~Y~C~~~~~~~  257 (376)
T 2aty_A          184 LTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFR------SVSELPIMHQDWLNGKEFKCRVNSAAF  257 (376)
T ss_pred             CeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEE------EEEEEEechHhccCCCEEEEEEecCCC
Confidence            467788887766   32 4799999553321110000 000111111      223799999999999999999966532


Q ss_pred             -ceEeEEE----EEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-C-CCeEEEEECCeEE
Q psy16425         78 -KSQVGYL----EVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-P-KPNITWRREGGEL  132 (163)
Q Consensus        78 -~~~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~p~v~W~~~~~~~  132 (163)
                       ......+    .+..+|.+...+..  ....+|+.+.|.|.+.|. | .+.|+|++++..+
T Consensus       258 ~~~~~~~v~~~~~~~~~P~v~v~~~~--~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~  317 (376)
T 2aty_A          258 PAPIEKTISKTKGRPKAPQLYTIPPP--KEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPA  317 (376)
T ss_pred             CCceEEEEcCCCCCCcCCeEEeeCCC--HHHhcCCceEEEEEEEEeECCCcEEEEEECCEEC
Confidence             2222222    33445655544432  223458899999999985 3 4589999999876

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.36  E-value=1e-11  Score=73.16  Aligned_cols=77  Identities=19%  Similarity=0.237  Sum_probs=53.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+..        ..+........+..+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        21 ~~~~l~C~~~g~p~p~v~W~~-~g~~~~~--------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (100)
T 2kdg_A           21 RFCRMDFKVSGLPAPDVSWYL-NGRTVQS--------DDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT   91 (100)
T ss_dssp             CCEEEEEECEEESCCEEEEEE-TTEEECC--------CSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEEEEeeCCCEEEEEE-CCEECcC--------CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEE
Confidence            467889999999999999999 5555421        111111222234458999999999999999999776 344455


Q ss_pred             EEEEEEc
Q psy16425         82 GYLEVVV   88 (163)
Q Consensus        82 ~~l~v~~   88 (163)
                      +.|.|..
T Consensus        92 ~~l~V~~   98 (100)
T 2kdg_A           92 VQLDVLA   98 (100)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            5666553

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.35  E-value=7.9e-12  Score=71.62  Aligned_cols=72  Identities=17%  Similarity=0.332  Sum_probs=51.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      .++.|.|...+ |.|.|.||| ++..+.        ...++.....+ +..+|.|.+++.+|+|.|+|.+.+   ....+
T Consensus        12 ~~v~l~C~vs~-p~p~v~W~k-~g~~l~--------~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~a   77 (84)
T 2lu7_A           12 GDLELVVHLSG-PGGPVRWYK-DGERLA--------SQGRVQLEQAG-ARQVLRVQGARSGDAGEYLCDAPQ---DSRIF   77 (84)
T ss_dssp             SCEEEECCCSC-CSTTCEEEE-TTEECC--------CCSSEEEEECS-SCEEEEESSCSSTTCEEEEEECTT---TCEEE
T ss_pred             CCEEEEEEECC-CCcEEEEEE-CCEEcc--------ccccEEEeecC-CeEEEEecCCCCcccEEEEEEECC---EEEEE
Confidence            36788887755 888999999 666652        34455555443 345899999999999999998833   35556


Q ss_pred             EEEEEc
Q psy16425         83 YLEVVV   88 (163)
Q Consensus        83 ~l~v~~   88 (163)
                      .|.|..
T Consensus        78 ~l~V~e   83 (84)
T 2lu7_A           78 LVSVEE   83 (84)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            666653

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.35  E-value=2.1e-12  Score=95.52  Aligned_cols=122  Identities=15%  Similarity=0.204  Sum_probs=73.8

Q ss_pred             eeEEEeeeecc-CC-CEEEEEEcCCceEEe-eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc-e
Q psy16425          4 RMLIEIGEMLM-AE-STVAWLRVDTQTILT-IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK-S   79 (163)
Q Consensus         4 ~~~~~~~~~~~-~~-~~i~W~k~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~   79 (163)
                      .+.|.|...+. |. +.|.|++ ++..+.. ........++++...      ..|.|.++..+| |.|+|.+.+.... .
T Consensus       149 ~v~L~C~~~g~~P~~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-G~Y~C~a~n~~~~~~  220 (457)
T 1hzh_H          149 TAALGCLVKDYFPEPVTVSWNS-GALTSGVHTFPAVLQSSGLYSLS------SVVTVPSSSLGT-QTYICNVNHKPSNTK  220 (457)
T ss_dssp             CEEEEEEEESBBSCCCEEEETT-TTBCTTEEEEEEEECTTSCEEEE------EEEEECSGGGGT-SCCEEEEEEGGGTEE
T ss_pred             cEEEEEEEeEEeCCCeEEEEEe-CCEeccceEcCceECCCCCEEEE------EEEEecccccCC-ceEEEEEEeCCCCcc
Confidence            57888888776 54 8999999 4433211 111111223333322      279999999999 9999999775322 2


Q ss_pred             EeEEEEEEc-----------------CCcccccCCCCcEEEeCCCcEEEEeEeccCCCC----eEEEEECCeEEE
Q psy16425         80 QVGYLEVVV-----------------PPDILDYPTSTDMVIREGSNVTLKCAASGSPKP----NITWRREGGELI  133 (163)
Q Consensus        80 ~~~~l~v~~-----------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p----~v~W~~~~~~~~  133 (163)
                      ....+.+..                 +|.+...++.....+.+|+++.|.|.+.|.|++    .+.|++++..+.
T Consensus       221 ~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~  295 (457)
T 1hzh_H          221 VDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH  295 (457)
T ss_dssp             EEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEEC
T ss_pred             eeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccc
Confidence            222232211                 232211121111125679999999999987553    899999998764

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.35  E-value=4.9e-13  Score=98.32  Aligned_cols=146  Identities=8%  Similarity=0.041  Sum_probs=86.5

Q ss_pred             ceeEEEeeeecc-CCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc-e
Q psy16425          3 ARMLIEIGEMLM-AES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK-S   79 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~   79 (163)
                      ..+.|.|...+. |.+ .|.|++. +..+...........+.+...      ..|.|.++..+| |.|+|.+.+.... .
T Consensus       135 ~~v~L~C~~~g~~P~p~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-g~Y~C~a~n~~~~~~  206 (434)
T 1igy_B          135 SMVTLGCLVKGYFPEPVTVTWNSG-SLSSGVHTFPAVLQSDLYTLS------SSVTVPSSPRPS-ETVTCNVAHPASSTK  206 (434)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEETTT-TBCSSEEECCCEECSSCEEEE------EEEEEETTTTTS-SCCEEEEECTTTTCC
T ss_pred             CcEEEEEEEeeecCCCeEEEEeeC-CcCCCeEecCceecCCcEEEE------EEEEEcchhcCC-CcEEEEEEeCCCCcc
Confidence            367888888775 665 9999994 433210000001111333322      269999999999 9999999776322 2


Q ss_pred             EeEEEEEEc---------C---CcccccCCCCcEEEeCCCcEEEEeEeccCC----CCeEEEEECCeEEEecCCce----
Q psy16425         80 QVGYLEVVV---------P---PDILDYPTSTDMVIREGSNVTLKCAASGSP----KPNITWRREGGELIAQGNGQ----  139 (163)
Q Consensus        80 ~~~~l~v~~---------~---p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p----~p~v~W~~~~~~~~~~~~~~----  139 (163)
                      ....+.+..         .   |.+...++.....+.+|+++.|.|.+.|.|    .+.++|++++..+.......    
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~  286 (434)
T 1igy_B          207 VDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQ  286 (434)
T ss_dssp             EEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCC
T ss_pred             ceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeC
Confidence            333332210         0   232222211111167899999999999874    35899999997764321111    


Q ss_pred             -----EEeceEEEEcchhhhHh
Q psy16425        140 -----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       140 -----~~~~~l~i~~v~~~~~~  156 (163)
                           ...+.|.|.++..+|.+
T Consensus       287 ~~~~~~~~~~L~i~~~~~~d~G  308 (434)
T 1igy_B          287 FNSTFRVVSALPIMHQDWLNGK  308 (434)
T ss_dssp             CSSSCCCCCCEECCHHHHHHTC
T ss_pred             CCCcEEEEEEEEECHHHccCCC
Confidence                 12346899999888875

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=9.3e-12  Score=74.70  Aligned_cols=81  Identities=16%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.       ....++.+.....+...|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        24 ~~v~l~C~~~g~p~p~v~W~k-~g~~~~-------~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~   95 (110)
T 2dm2_A           24 MPVTFTCRVAGNPKPKIYWFK-DGKQIS-------PKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCT   95 (110)
T ss_dssp             CCEEEEEEBCCSSCCEEEEEC-SSCBCC-------TTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEEC
T ss_pred             CeEEEEEEEEecCCCEEEEEE-CCEECC-------CCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEE
Confidence            468889999999999999999 555442       12355666655555668999999999999999999776 455556


Q ss_pred             EEEEEEcCCc
Q psy16425         82 GYLEVVVPPD   91 (163)
Q Consensus        82 ~~l~v~~~p~   91 (163)
                      +.|.|...|.
T Consensus        96 ~~l~V~~~~~  105 (110)
T 2dm2_A           96 GRLMVQAVNS  105 (110)
T ss_dssp             CCEEEECCSC
T ss_pred             EEEEEECCCC
Confidence            6777776553

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.33  E-value=7.6e-12  Score=74.41  Aligned_cols=78  Identities=10%  Similarity=0.090  Sum_probs=53.2

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeE--EE--EeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCc
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRI--GV--THSETKAWYLHIREVRESDRGWYMCQVNTD-PMK   78 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~--~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~   78 (163)
                      .+.+.|...+.|.|.|.|++ ++..+..        ..+.  ..  .........|.|.+++.+|+|.|+|.+.|. +..
T Consensus        18 ~~~~~c~v~G~P~P~i~W~k-~g~~l~~--------~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   88 (103)
T 1wwb_X           18 HWCIPFTVKGNPKPALQWFY-NGAILNE--------SKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD   88 (103)
T ss_dssp             EEEEEEEEECSSCCEEEEEE-TTEEECC--------CSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred             EEEEEEEEEEeCCCEEEEEE-CCEECCC--------CCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcE
Confidence            46788889999999999999 6655522        1221  11  111112346999999999999999999776 444


Q ss_pred             eEeEEEEEEcCC
Q psy16425         79 SQVGYLEVVVPP   90 (163)
Q Consensus        79 ~~~~~l~v~~~p   90 (163)
                      ...+.|.|...|
T Consensus        89 ~~~~~l~V~~~P  100 (103)
T 1wwb_X           89 EKQISAHFMGWP  100 (103)
T ss_dssp             EEEEEECCSCCC
T ss_pred             eEEEEEEECCCC
Confidence            555566665554

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.32  E-value=2.4e-11  Score=76.58  Aligned_cols=89  Identities=19%  Similarity=0.322  Sum_probs=64.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      .++.|.|...+.+.+.|.|++.+...++. .........|+........+.+|.|.+++.+|+|.|+|.+.+.+.....+
T Consensus        54 ~~v~L~C~~~~~~~~~i~W~~~~~~~i~~-~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~  132 (145)
T 1z9m_A           54 GTVVLKCQVKDHEDSSLQWSNPAQQTLYF-GEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKS  132 (145)
T ss_dssp             SCEEEEEECSCCTTCCEEEECTTCCEEEE-TTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEE
T ss_pred             CCEEEEEEEcCCCCcEEEEECCCCcEEEE-CCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcCCCceEEE
Confidence            46889999888888999999755444432 22222334677766555567799999999999999999997765556667


Q ss_pred             EEEEEcCCcc
Q psy16425         83 YLEVVVPPDI   92 (163)
Q Consensus        83 ~l~v~~~p~~   92 (163)
                      .|.|..+|..
T Consensus       133 ~L~V~~~P~~  142 (145)
T 1z9m_A          133 LVTVLGIPQK  142 (145)
T ss_dssp             EEEEECCCC-
T ss_pred             EEEEEeCCCC
Confidence            7888876643

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.31  E-value=5.3e-11  Score=79.45  Aligned_cols=141  Identities=18%  Similarity=0.198  Sum_probs=86.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+..      ....++.+.... ....|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        34 ~~v~l~C~~~g~p~p~i~W~~-~g~~l~~------~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  105 (215)
T 3mtr_A           34 NQVNITCEVFAYPSATISWFR-DGQLLPS------SNYSNIKIYNTP-SASYLEVTPDSENDFGNYNCTAVNRIGQESLE  105 (215)
T ss_dssp             CCEEEEEEEEEESCCEEEEEE-TTEESSC------SSSCSEEEEEET-TEEEEEECCCSGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCEEEEEEEeecCCCEEEEEE-CCeECCC------CCCccEEEecCC-CeeEEEEecCChhhCeEEEEEEEECCCceEEE
Confidence            468899999999999999999 5554321      111344444322 2458999999999999999999776 444555


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc----CCCC--eEEEEECCeEEEecCCce----EEeceEEEEcch
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG----SPKP--NITWRREGGELIAQGNGQ----EDFPFFKRTKKK  151 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~----~p~p--~v~W~~~~~~~~~~~~~~----~~~~~l~i~~v~  151 (163)
                      +.|.+..+|......    .....+..+.|.|....    .|..  .+.|..++...-......    .....|+|.++.
T Consensus       106 ~~l~v~~~P~~p~~~----~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~  181 (215)
T 3mtr_A          106 FILVQADTPSSPSID----QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLK  181 (215)
T ss_dssp             EEEEECCCCCCCEEE----EEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCC
T ss_pred             EEEEECCCCCCCcce----EEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCC
Confidence            666776666443211    12234677888887432    2333  377887764311100000    012567777777


Q ss_pred             hhhH
Q psy16425        152 KKKK  155 (163)
Q Consensus       152 ~~~~  155 (163)
                      ..+.
T Consensus       182 ~~~~  185 (215)
T 3mtr_A          182 PETT  185 (215)
T ss_dssp             TTCE
T ss_pred             CCCE
Confidence            6653

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.31  E-value=4.9e-11  Score=80.50  Aligned_cols=121  Identities=17%  Similarity=0.259  Sum_probs=72.9

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCC-ce---EEeee------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDT-QT---ILTIQ------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~-~~---~~~~~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+  .+...|.||+... ..   +....      .......+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~   95 (226)
T 3mlr_H           16 QSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQASDTGKYF   95 (226)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcccCEEEE
Confidence            46788888754  3467899998531 11   11111      0011224677776544 36788999999999999999


Q ss_pred             EEEEeCC----------CceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEecc-CC-CCeEEE
Q psy16425         70 CQVNTDP----------MKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG-SP-KPNITW  125 (163)
Q Consensus        70 C~~~~~~----------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~p~v~W  125 (163)
                      |.+.+..          .......|.|..    +|.+...+  ....+.+|+.+.|.|.+.+ .| .+.+.|
T Consensus        96 C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~~v~W  165 (226)
T 3mlr_H           96 CTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPEPVTVSW  165 (226)
T ss_dssp             EEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEE--EEECSTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             EeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEec--CcccccCCCCEEEEEEEEEEECCCeEEEE
Confidence            9995431          011223455532    22222111  1222457899999999987 45 457999

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.31  E-value=5.2e-12  Score=90.21  Aligned_cols=121  Identities=18%  Similarity=0.241  Sum_probs=71.6

Q ss_pred             ceeEEEeeeecc-CC-CEEEEEEcCCceEEe-eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc-
Q psy16425          3 ARMLIEIGEMLM-AE-STVAWLRVDTQTILT-IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK-   78 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~-~~i~W~k~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-   78 (163)
                      ..+.|.|...+. |. +.|.|++ ++..+.. .........+++...      ..|.|.+++.+| |.|+|.+.+.... 
T Consensus       136 ~~v~L~C~~~g~~P~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-G~Y~C~a~n~~~~~  207 (344)
T 1za6_B          136 GTAALGCLVKDYFPEPVTVSWNS-GALTSGVHTFPAVLQSSGLYSLS------SVVTVPSSSLGT-QTYICNVNHKPSNT  207 (344)
T ss_dssp             SEEEEEEEEEEEBSSCCCEEETT-TTBCTTEEECCCEECTTSCEEEE------EEEEEETTHHHH-BCEEEEEEEGGGTE
T ss_pred             CcEEEEEEEeeEECCCeEEEEec-CCccCceeECCCeECCCCCEEEE------EEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            367888888776 54 7999999 4443211 011111223344332      279999999888 9999999776332 


Q ss_pred             eEeEEEE------------------------EEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-C-CCeEEEEECCeEE
Q psy16425         79 SQVGYLE------------------------VVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-P-KPNITWRREGGEL  132 (163)
Q Consensus        79 ~~~~~l~------------------------v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~p~v~W~~~~~~~  132 (163)
                      .....+.                        ...+|.+...+.. .. ..+|+.+.|.|.+.|. | .+.+.|+++|..+
T Consensus       208 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~-~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~  285 (344)
T 1za6_B          208 KVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPS-RD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE  285 (344)
T ss_dssp             EEEEEECCCCC--------------------CCBCCEEEEECCC-GG-GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCC
T ss_pred             cceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCC-hH-hccCCcEEEEEEEeeEECCCeEEEEEECCeEC
Confidence            2222221                        1223443332211 11 2246679999999985 4 3589999999876


Q ss_pred             E
Q psy16425        133 I  133 (163)
Q Consensus       133 ~  133 (163)
                      .
T Consensus       286 ~  286 (344)
T 1za6_B          286 N  286 (344)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.31  E-value=1.1e-10  Score=79.20  Aligned_cols=143  Identities=13%  Similarity=0.096  Sum_probs=83.2

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-Cce--EEee-e-eeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQT--ILTI-Q-THVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~--~~~~-~-~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...+.+  ...|.||+.. +..  .... . .......+|+.+..+ ..++++|.|.+++.+|+|.|.|.+.+
T Consensus        17 ~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~   96 (229)
T 1hxm_A           17 VPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT   96 (229)
T ss_dssp             CCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEec
Confidence            4678888876433  5789999853 211  1111 1 111123578887754 34678999999999999999999965


Q ss_pred             CC------C---ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEECCeEEEecCCce--EE
Q psy16425         75 DP------M---KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGGELIAQGNGQ--ED  141 (163)
Q Consensus        75 ~~------~---~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~~~~~~~--~~  141 (163)
                      ..      .   ......|.|.........|   ...+.. ..+.|.|.+.+. |.+ .+.|.++ ..+.......  ..
T Consensus        97 ~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P---~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~~~~~~~~~~~~  171 (229)
T 1hxm_A           97 LGMGGEYTDKLIFGKGTRVTVEPRSQPHTKP---SVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KKITEFDPAIVISP  171 (229)
T ss_dssp             CCCSSSCCCCCEEBCCEEEEEECCSCCCBCC---EEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SEEEECCCEEEECT
T ss_pred             CCCcccccchhhcCccEEEEEeccCCCCcCC---cEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CEEecCccceEECC
Confidence            42      1   1223466666422111111   222222 234899999874 654 8999999 7664332211  13


Q ss_pred             eceEEEEcc
Q psy16425        142 FPFFKRTKK  150 (163)
Q Consensus       142 ~~~l~i~~v  150 (163)
                      ++.|.+...
T Consensus       172 dg~y~~~~~  180 (229)
T 1hxm_A          172 SGKYNAVKL  180 (229)
T ss_dssp             TSSEEEEEE
T ss_pred             CCcEEEEEC
Confidence            356666543

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.1e-11  Score=71.82  Aligned_cols=75  Identities=21%  Similarity=0.341  Sum_probs=55.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.       ....++.....+    +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        24 ~~~~l~C~~~g~p~p~v~W~~-~~~~~~-------~~~~~~~~~~~~----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   91 (100)
T 2edj_A           24 GTALLKCKATGDPLPVISWLK-EGFTFP-------GRDPRATIQEQG----TLQIKNLRISDTGTYTCVATSSSGETSWS   91 (100)
T ss_dssp             SEEEECCEEECSSCCEEEEEE-SSSEES-------SSCSSCEECTTC----CEEEESCCTTTCCEEEEEEECSSCCCBCC
T ss_pred             CcEEEEEEEEEcCCCEEEEEE-CCEECC-------CCCCCEEEcCCC----EEEEccCCcccCEEEEEEEEcCCCCEEEE
Confidence            468889999999999999999 554442       123444443333    7999999999999999999776 555566


Q ss_pred             EEEEEEcC
Q psy16425         82 GYLEVVVP   89 (163)
Q Consensus        82 ~~l~v~~~   89 (163)
                      +.|.|..+
T Consensus        92 ~~l~V~~~   99 (100)
T 2edj_A           92 AVLDVTES   99 (100)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEecC
Confidence            67777654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.30  E-value=4.2e-11  Score=70.86  Aligned_cols=76  Identities=16%  Similarity=0.196  Sum_probs=54.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.        ...++...... ...+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        24 ~~v~l~C~~~g~p~p~i~W~k-~~~~~~--------~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   93 (103)
T 3qp3_A           24 QNTRFILNVQSKPTAEVKWYH-NGVELQ--------ESSKIHYTNTS-GVLTLEILDCHTDDSGTYRAVCTNYKGEASDY   93 (103)
T ss_dssp             CCEEEEEEEEEESCCEEEEEE-TTEECC--------CCSSEEEEEET-TEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEEecCCCEEEEEE-CCEECC--------CCCCEEEEECC-CEEEEEEcCCCcccCEEEEEEEEeCCCcEEEE
Confidence            467889999999999999999 555442        23344444322 3458999999999999999999776 444555


Q ss_pred             EEEEEEc
Q psy16425         82 GYLEVVV   88 (163)
Q Consensus        82 ~~l~v~~   88 (163)
                      +.|.|..
T Consensus        94 ~~l~V~~  100 (103)
T 3qp3_A           94 ATLDVTG  100 (103)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            6666654

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=4.6e-11  Score=72.58  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=55.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+.         ..++.+.. ......|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        40 ~~~~l~C~~~g~P~p~i~W~k-~g~~l~---------~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~  108 (118)
T 2e7c_A           40 EQLNLVVPFQGKPRPQVVWTK-GGAPLD---------TSRVHVRT-SDFDTVFFVRQAARSDSGEYELSVQIENMKDTAT  108 (118)
T ss_dssp             SCEEEEEEEEEESCCEEEEEE-TTEECC---------CSSCEEEE-CSSEEEEEESSCCTTTCEEEEEEEECSSCEECCE
T ss_pred             CEEEEEEEEccCCCCEEEEEE-CCEECC---------CCcEEEEE-CCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEE
Confidence            367889999999999999999 555441         23333332 223457999999999999999999776 444555


Q ss_pred             EEEEEEcCC
Q psy16425         82 GYLEVVVPP   90 (163)
Q Consensus        82 ~~l~v~~~p   90 (163)
                      +.|.|...|
T Consensus       109 ~~l~V~~~P  117 (118)
T 2e7c_A          109 IRIRVVEKA  117 (118)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            667776554

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.29  E-value=3.8e-11  Score=70.52  Aligned_cols=76  Identities=21%  Similarity=0.361  Sum_probs=52.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.       ....++..... .+..+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        21 ~~v~l~C~~~g~p~p~v~W~k-~~~~~~-------~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~   91 (99)
T 1u2h_A           21 QDVIMSIRVQGEPKPVVSWLR-NRQPVR-------PDQRRFAEEAE-GGLCRLRILAAERGDAGFYTCKAVNEYGARQCE   91 (99)
T ss_dssp             CCEEEEEEEEEESCCEEEEEE-TTEECC-------CBTTEEEEECG-GGEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEEEEEcCCCEEEEEE-CCEECC-------CCCCEEEEECC-CCEEEEEEccCCcCCCEEEEEEEEECCCceeEE
Confidence            468889999999999999999 554432       11233333222 23457999999999999999999776 333444


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus        92 ~~l~V~   97 (99)
T 1u2h_A           92 ARLEVR   97 (99)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            455553

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.28  E-value=2.2e-10  Score=86.09  Aligned_cols=128  Identities=18%  Similarity=0.250  Sum_probs=78.8

Q ss_pred             ceeEEEeeeeccCC----CEEEEEEcC-Cce---EEe-eee----eEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEE
Q psy16425          3 ARMLIEIGEMLMAE----STVAWLRVD-TQT---ILT-IQT----HVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         3 ~~~~~~~~~~~~~~----~~i~W~k~~-~~~---~~~-~~~----~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y   68 (163)
                      ..+.|.|...+.+.    ..|.||+.. +..   +.. ...    ......+|+.+..+. .++++|.|.+++.+|+|.|
T Consensus        16 ~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y   95 (512)
T 1zvo_C           16 ETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMSAADTAMY   95 (512)
T ss_pred             CCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcCCHHHCEEE
Confidence            46888888765443    689999853 221   111 110    011234688877653 3578999999999999999


Q ss_pred             EEEEEeCCC--------------ceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC-eEEEEEC
Q psy16425         69 MCQVNTDPM--------------KSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRRE  128 (163)
Q Consensus        69 ~C~~~~~~~--------------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~v~W~~~  128 (163)
                      .|.+.+...              ......|.|..    +|.+...... ......|+.+.|.|.+.+. |.| .++|+++
T Consensus        96 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~~~~~v~L~C~~~g~~P~p~~v~W~~~  174 (512)
T 1zvo_C           96 YCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISG-CRHPKDNSPVVLACLITGYHPTSVTVTWYMG  174 (512)
T ss_pred             EEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCC-cccccCCCeEEEEEEEEeeecCceEEEEEcC
Confidence            999965421              12334566653    2333211110 1101246899999999886 765 8999997


Q ss_pred             CeE
Q psy16425        129 GGE  131 (163)
Q Consensus       129 ~~~  131 (163)
                      +..
T Consensus       175 ~~~  177 (512)
T 1zvo_C          175 TQS  177 (512)
T ss_pred             ccc
Confidence            643

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.27  E-value=2.2e-11  Score=83.14  Aligned_cols=121  Identities=17%  Similarity=0.232  Sum_probs=72.9

Q ss_pred             ceeEEEeeeeccC----CCEEEEEEcCCceEEeeeee--EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMA----ESTVAWLRVDTQTILTIQTH--VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~----~~~i~W~k~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|...+..    ...|.|++ ++..+......  ....++++...      ..|.|......|.|.|+|.+.+..
T Consensus        40 ~~~~L~C~v~g~~p~P~~i~v~W~k-~g~~l~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~~~YtC~v~h~~  112 (240)
T 4acp_A           40 RTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVHNAKTKPREEQYNSTYRVV------SVLTVLHQDWLNGKEYKCKVSNKA  112 (240)
T ss_dssp             SCCEEEEEEESCCC--CCCEEEEEE-TTEEECCCEECCCEEC---CEEEE------EEEECCHHHHHHTCCEEEEEECC-
T ss_pred             CCcEEEEEEeccccCCCccEEEEEE-CCcccCCceeccceECCCCeEEEE------EEEEEechhccCCCEEEEEEEcCC
Confidence            4678888887753    45899999 56554221110  11123333333      268888888888999999997653


Q ss_pred             C-ceEeEEEE----EEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC-eEEEEECCeEE
Q psy16425         77 M-KSQVGYLE----VVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP-NITWRREGGEL  132 (163)
Q Consensus        77 ~-~~~~~~l~----v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~  132 (163)
                      . ......+.    +..+|.+...+...  ...+|+.+.|.|.+.+ +|.+ .++|++++..+
T Consensus       113 ~~~~~~~~i~~~~~~~~~P~V~v~~~~~--~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~  173 (240)
T 4acp_A          113 LPAPIEKTISKAKGQPREPQVYTLPPSR--DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE  173 (240)
T ss_dssp             ---CEEEEECCCCSCCBCCEEEEECCCG--GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CCccccccccccCCCCCCCEEEEECCCh--HHhcCCceEEEEEEeEEeCCCcEEEEEECCEEC
Confidence            3 22222222    23455554433221  1224889999999998 5654 79999999875

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.27  E-value=7.6e-11  Score=69.15  Aligned_cols=75  Identities=20%  Similarity=0.366  Sum_probs=54.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+        ....++.+.... +..+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        22 ~~~~l~C~~~g~p~p~v~W~~-~g~~~--------~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~   91 (99)
T 3puc_A           22 SVAKFAVKATGEPRPTAIWTK-DGKAI--------TQGGKYKLSEDK-GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSS   91 (99)
T ss_dssp             SCEEEEEEEEEESCCEEEEEE-TTEEC--------CSSSSEEEEEET-TEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEEecCCCEEEEEE-CCEEC--------cCCCCEEEEEeC-CEEEEEECCCCcccCEEEEEEEEeCCCcEeEE
Confidence            468889999999999999999 55544        233455554432 3458999999999999999999776 344445


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus        92 ~~l~V~   97 (99)
T 3puc_A           92 CKLTIK   97 (99)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555554

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=1.2e-11  Score=74.08  Aligned_cols=80  Identities=16%  Similarity=0.163  Sum_probs=56.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.        ...+........+..+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        25 ~~v~l~C~~~g~p~p~v~W~~-~g~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   95 (110)
T 2dm3_A           25 KLCRMDCKVSGLPTPDLSWQL-DGKPVR--------PDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFS   95 (110)
T ss_dssp             SCBCCEEEEECSSCCEEECBB-SSSBCC--------CCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEEC
T ss_pred             CEEEEEEEEEEcCCCEEEEEE-CCEECC--------CCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEE
Confidence            357788998899999999999 554442        1222222223334568999999999999999999776 445556


Q ss_pred             EEEEEEcCCc
Q psy16425         82 GYLEVVVPPD   91 (163)
Q Consensus        82 ~~l~v~~~p~   91 (163)
                      +.|.|..+|.
T Consensus        96 ~~l~V~~~p~  105 (110)
T 2dm3_A           96 LELVVAAKES  105 (110)
T ss_dssp             CEEEEECCCC
T ss_pred             EEEEEeCCCC
Confidence            6777776654

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=2.3e-11  Score=73.63  Aligned_cols=82  Identities=13%  Similarity=0.144  Sum_probs=58.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      .++.+.|...+.|.|.|.||+ ++..+.        ...++.+.....+..+|.|.+++.+|+|.|+|.+   +.....+
T Consensus        29 ~~v~l~C~~~g~p~p~v~W~k-~g~~l~--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~---g~~~~~~   96 (115)
T 2cr6_A           29 SSATFRCRISPANYEPVHWFL-DKTPLH--------ANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA---GDQRASA   96 (115)
T ss_dssp             SCEECCCEEESTTCCSCEEEE-SSCEEC--------CSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE---TTEECCE
T ss_pred             CcEEEEEEEcCCCCCccEEEE-CCEECC--------CCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE---CCeeEEE
Confidence            367888999999999999999 555542        2233333322223457999999999999999995   4455567


Q ss_pred             EEEEEcCCcccccC
Q psy16425         83 YLEVVVPPDILDYP   96 (163)
Q Consensus        83 ~l~v~~~p~~~~~~   96 (163)
                      .|.|..+|.+...+
T Consensus        97 ~L~V~~~p~~~~~~  110 (115)
T 2cr6_A           97 ALRVTEKPSVFSRS  110 (115)
T ss_dssp             EEEEECCSSCCSSS
T ss_pred             EEEEECCCceeccC
Confidence            89998888765433

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.24  E-value=1.2e-10  Score=68.15  Aligned_cols=74  Identities=18%  Similarity=0.250  Sum_probs=52.3

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      .++.|.|...+. |.+.|.|++ ++..+        ....++.+... .+...|.|.+++.+|+|.|+|.+.|. +....
T Consensus        17 ~~v~l~C~~~g~~p~~~v~W~~-~~~~~--------~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   86 (97)
T 2bk8_A           17 GHVKYVCKIENYDQSTQVTWYF-GVRQL--------ENSEKYEITYE-DGVAILYVKDITKLDDGTYRCKVVNDYGEDSS   86 (97)
T ss_dssp             CCEEEEEEEESCCTTCEEEEEE-TTEEC--------CSSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CcEEEEEEEeccCCCCEEEEEE-CCEEC--------cCCCCEEEEEc-CCeEEEEEecCChhhCeEEEEEEECCCCeEeE
Confidence            468889999886 999999999 55443        23345544332 23558999999999999999999766 33334


Q ss_pred             eEEEEE
Q psy16425         81 VGYLEV   86 (163)
Q Consensus        81 ~~~l~v   86 (163)
                      .+.|.|
T Consensus        87 ~~~l~V   92 (97)
T 2bk8_A           87 YAELFV   92 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444544

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.24  E-value=1.5e-10  Score=84.01  Aligned_cols=78  Identities=21%  Similarity=0.300  Sum_probs=57.5

Q ss_pred             ceEEEEEcccCCCCCeEEEEEEEeCC-CceEeEEEEEEcCCcccccCCCCcEEEeCCC-cEEEEeEecc-CCC--CeEEE
Q psy16425         51 KAWYLHIREVRESDRGWYMCQVNTDP-MKSQVGYLEVVVPPDILDYPTSTDMVIREGS-NVTLKCAASG-SPK--PNITW  125 (163)
Q Consensus        51 ~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~~-~p~--p~v~W  125 (163)
                      ++++|.|.+++.+|+|.|.|.+.+.. .....+.|.|..+|.+...+.. ...+..|+ .+.|.|.+.+ +|.  +.+.|
T Consensus       252 g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~-~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW  330 (401)
T 3f8u_B          252 GNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT-LARAAPGEAPPELLCLVSHFYPSGGLEVEW  330 (401)
T ss_dssp             EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSS-CCCCCTTCCCCCEEEEEEEEBSSTTCEEEE
T ss_pred             CcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCc-ceeecCCCccEEEEEEecCCcCCCCcEEEE
Confidence            67899999999999999999996652 3334567778888876654321 11134576 7999999987 566  78999


Q ss_pred             E-ECC
Q psy16425        126 R-REG  129 (163)
Q Consensus       126 ~-~~~  129 (163)
                      . +++
T Consensus       331 ~~rdg  335 (401)
T 3f8u_B          331 ELRGG  335 (401)
T ss_dssp             EEESS
T ss_pred             EecCC
Confidence            5 765

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.24  E-value=6.2e-11  Score=70.70  Aligned_cols=77  Identities=18%  Similarity=0.354  Sum_probs=48.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.        ...++.....   +.+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        26 ~~v~l~C~~~g~p~p~i~W~~-~~~~~~--------~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   93 (108)
T 3kvq_A           26 ESIEVSCTASGNPPPQIMWFK-DNETLV--------EDSGIVLKDG---NRNLTIRRVRKEDEGLYTCQACSVLGCAKVE   93 (108)
T ss_dssp             CCEEEECBCC----CCEEEEE-SSSBCC--------CBTTEEEETT---TTEEEECSCCGGGCEEEEEEEC----CEEEE
T ss_pred             CeEEEEEECcCcCCCeEEEEE-CCeEcc--------cCCCeEEeCC---CcEEEEeecCcccCEEEEEEEEeCCCceEEE
Confidence            468889999999999999999 444432        1222332221   238999999999999999999765 555666


Q ss_pred             EEEEEEcCCc
Q psy16425         82 GYLEVVVPPD   91 (163)
Q Consensus        82 ~~l~v~~~p~   91 (163)
                      +.|.|..+|.
T Consensus        94 ~~l~V~~~~~  103 (108)
T 3kvq_A           94 AFFIIEGAQE  103 (108)
T ss_dssp             EEEEEEC---
T ss_pred             EEEEEeCCCc
Confidence            7788877654

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.22  E-value=8.6e-11  Score=68.31  Aligned_cols=73  Identities=12%  Similarity=0.165  Sum_probs=49.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      ..+.|.|...+.|.|.|.|++.+ +..+.        ...++...   .....|.|.+++.+|+|.|+|.+.|. +....
T Consensus        18 ~~~~l~C~~~g~P~p~i~W~k~~~~~~~~--------~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   86 (93)
T 1wit_A           18 FTHNLEVDFIGAPDPTATWTVGDSGAALA--------PELLVDAK---SSTTSIFFPSAKRADSGNYKLKVKNELGEDEA   86 (93)
T ss_dssp             BCCEEEEEEECCSSCEEEEECSTTTCBCS--------TTSEEEEE---TTEEEEECTTBCGGGCEEEEEEEEETTEEEEE
T ss_pred             CEEEEEEEEEEcCCCEEEEEECCCCcccC--------CcEEEEec---CCEEEEEECCCChhcCEEEEEEEEcCCCeEEE
Confidence            46788999999999999999944 14431        11111111   23358999999999999999999776 33333


Q ss_pred             eEEEEE
Q psy16425         81 VGYLEV   86 (163)
Q Consensus        81 ~~~l~v   86 (163)
                      .+.|.|
T Consensus        87 ~~~l~V   92 (93)
T 1wit_A           87 IFEVIV   92 (93)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            344443

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.86  E-value=9.5e-13  Score=86.44  Aligned_cols=126  Identities=14%  Similarity=0.205  Sum_probs=76.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c---eE-EeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeC-
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q---TI-LTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTD-   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~---~~-~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~-   75 (163)
                      ..+.|.|...+.+.+.|.||+... .   .+ +..........+|+.+..+ ..+.++|.|.+++.+|+|.|.|.+.+. 
T Consensus        16 ~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~   95 (185)
T 3c6l_A           16 ETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNR   95 (185)
Confidence            467788887666656899998531 1   11 1111111123567766543 235678999999999999999998542 


Q ss_pred             CCceEeEEEEEEcC-----CcccccCCCCcEEEeCCCcEEEEeEecc-CCCCeEEEEECCeEEEec
Q psy16425         76 PMKSQVGYLEVVVP-----PDILDYPTSTDMVIREGSNVTLKCAASG-SPKPNITWRREGGELIAQ  135 (163)
Q Consensus        76 ~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~  135 (163)
                      ........|.|...     |.+....       ...+.+.|.|.+.| +|.|.|.|.........+
T Consensus        96 ~~fg~gT~L~V~~~~~~~~P~V~~~~-------~~~~~vtL~C~~~gf~P~p~v~~~~~~~~~~~~  154 (185)
T 3c6l_A           96 IFFGDGTQLVVKPNIQNPEPAVYQLK-------DPRSQDSTLCLFTDFDSQINVPKTMESGTFITD  154 (185)
Confidence            11222334555432     2221111       11227899999987 789999998766555433

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.22  E-value=4.4e-11  Score=69.54  Aligned_cols=60  Identities=15%  Similarity=0.282  Sum_probs=44.1

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ++.|.|...+ |.+.|.|+| ++..+.        ...++.+...+ +..+|.|.+++.+|+|.|+|.+.|
T Consensus        23 ~v~l~C~v~~-p~~~v~W~k-~g~~i~--------~~~~~~i~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A           23 CVMLACEVDR-EDAPVRWYK-DGQEVE--------ESDFVVLENEG-PHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             CEEEEEECSC-TTSCCEEEE-TTSCCC--------CCSSCEEEEET-TEEEEEESSCCGGGCSEEEEECSS
T ss_pred             cEEEEEEECC-CCcEEEEEE-CCEEee--------eeeeeeEEecC-CeEEEEeCCCChhhcEEEEEEEcc
Confidence            5778887654 888999999 666652        23445544433 345899999999999999999844

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.21  E-value=2e-12  Score=86.65  Aligned_cols=124  Identities=16%  Similarity=0.150  Sum_probs=73.5

Q ss_pred             ceeEEEeeeeccCC---CEEEEEEcCCceEEeeeee-EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc
Q psy16425          3 ARMLIEIGEMLMAE---STVAWLRVDTQTILTIQTH-VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~---~~i~W~k~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   78 (163)
                      .++.|.|...+.++   +.|.| + +.......... .....+++.      ....|.|.+++.+|+|.|+|.+.+....
T Consensus        20 ~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~------~~~~L~I~~~~~~D~g~Y~C~~~~~~~~   91 (214)
T 1ow0_A           20 SEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYS------VSSVLPGCAEPWNHGKTFTCTAAYPESK   91 (214)
T ss_dssp             SSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCC------EEEECTTTHHHHHHTCEEEEEECCSSCS
T ss_pred             CCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEE------EEEEEEEeHHHcCCCCeEEEEEecCCCC
Confidence            35778888877654   68999 4 33221100000 001112211      2347899999999999999999665322


Q ss_pred             -eEeEEEE---EEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCeEEEec
Q psy16425         79 -SQVGYLE---VVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGGELIAQ  135 (163)
Q Consensus        79 -~~~~~l~---v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~~~  135 (163)
                       .....+.   +..+|.+...+.. ...+.+|+.+.|.|.+.|. |+ +.+.|++++..+...
T Consensus        92 ~~~~~~i~~~~~~~~P~v~~~~~~-~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  153 (214)
T 1ow0_A           92 TPLTATLSKSGNTFRPEVHLLPPP-SEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE  153 (214)
T ss_dssp             SCEEEEEECCSSCCCCEEEEECCC-TTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGG
T ss_pred             CceeEeeccCCCCCCCEEEecCCC-HHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCC
Confidence             2223332   2345554332221 1224578889999999984 54 489999999876443

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.21  E-value=2.2e-10  Score=67.47  Aligned_cols=74  Identities=18%  Similarity=0.164  Sum_probs=53.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|... .|.+.|.||+ ++..+.        ...++.+...+ ....|.|.+++.+|+|.|+|.+   +.....+
T Consensus        24 ~~v~l~C~~~-~p~~~v~W~k-~g~~i~--------~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a---g~~~~~~   89 (100)
T 2yuv_A           24 GRVRFVVELA-DPKLEVKWYK-NGQEIR--------PSTKYIFEHKG-CQRILFINNCQMTDDSEYYVTA---GDEKCST   89 (100)
T ss_dssp             EEEEEEEEES-CTTSCEEEEE-SSCBCC--------CBTTEEEEEET-TEEEEEEEEECTTTCCEEEEEE---TTEEEEE
T ss_pred             CcEEEEEEec-CCCceEEEEE-CCEECC--------CCCCEEEEecC-CEEEEEEcCCCcCcCEEEEEEE---CCceEEE
Confidence            3577888877 6899999999 555442        23345544333 2347999999999999999999   4455667


Q ss_pred             EEEEEcCC
Q psy16425         83 YLEVVVPP   90 (163)
Q Consensus        83 ~l~v~~~p   90 (163)
                      .|.|..+|
T Consensus        90 ~l~V~~~P   97 (100)
T 2yuv_A           90 ELFVRSGP   97 (100)
T ss_dssp             EEEECCSC
T ss_pred             EEEEecCC
Confidence            77777665

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1e-10  Score=69.25  Aligned_cols=76  Identities=24%  Similarity=0.319  Sum_probs=54.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|...+ |.+.|.|++ ++..+        ....++.+...+ ....|.|.+++.+|+|.|+|.+.+   ....+
T Consensus        24 ~~v~l~C~~~~-~~~~v~W~k-~g~~~--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~   89 (103)
T 2edf_A           24 EDVELRCELSR-AGTPVHWLK-DRKAI--------RKSQKYDVVCEG-TMAMLVIRGASLKDAGEYTCEVEA---SKSTA   89 (103)
T ss_dssp             SCEEECCEESS-SSCCCCEEE-SSCBC--------CCSSSEEEEEET-TEEEEEESSCCTTTCSEEEEECSS---CEEEE
T ss_pred             CCEEEEEEEeC-CCCcEEEEE-CCEEc--------cCCCCEEEEECC-CEEEEEECCCCcccCEEEEEEEcc---CCcEE
Confidence            35778888876 788999999 55544        223455555433 245799999999999999999966   35667


Q ss_pred             EEEEEcCCcc
Q psy16425         83 YLEVVVPPDI   92 (163)
Q Consensus        83 ~l~v~~~p~~   92 (163)
                      .|.|..+|..
T Consensus        90 ~l~V~~~p~~   99 (103)
T 2edf_A           90 SLHVEEKASG   99 (103)
T ss_dssp             EEEECCCSSS
T ss_pred             EEEEeCCCCC
Confidence            7787776643

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.19  E-value=5.5e-10  Score=78.02  Aligned_cols=117  Identities=16%  Similarity=0.227  Sum_probs=72.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcc-cCCCCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIRE-VRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+        ....++...... ...+|.|.+ ++.+|+|.|+|.+.|. +....
T Consensus       120 ~~~~l~C~~~g~p~p~i~W~~-~~~~~--------~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~  189 (305)
T 2nzi_A          120 EVVSIKIPFSGKPDPVITWQK-GQDLI--------DNNGHYQVIVTR-SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK  189 (305)
T ss_dssp             CCEEEEEEEEEESCCEEEEEE-SSSBC--------CSSSSCEEEECS-SEEEEEETTCCCSTTCEEEEEEEEETTEEEEE
T ss_pred             CEEEEEEEECCCCCCEEEEEE-CCEEC--------CCCCcEEEEEcC-CceEEEEecCCccCccEEEEEEEEeCCCceee
Confidence            357888999999999999999 55444        223344433222 234899999 9999999999999776 44455


Q ss_pred             eEEEEEEcCCcccccC-----CCCcEEE------eCCCcEEEEeEeccCCCCeEEEEECC
Q psy16425         81 VGYLEVVVPPDILDYP-----TSTDMVI------REGSNVTLKCAASGSPKPNITWRREG  129 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~-----~~~~~~~------~~g~~~~l~C~~~~~p~p~v~W~~~~  129 (163)
                      .+.|.+...|......     ......+      ..|....+.|.+...+.+...|...+
T Consensus       190 ~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~  249 (305)
T 2nzi_A          190 TVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVG  249 (305)
T ss_dssp             EEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEE
T ss_pred             EEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECc
Confidence            5667777655422110     0011111      12344455666666666667777654

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.19  E-value=8.6e-10  Score=76.25  Aligned_cols=125  Identities=17%  Similarity=0.322  Sum_probs=74.5

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCC-ce---EEeee------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDT-QT---ILTIQ------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~-~~---~~~~~------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+  .....+.||+... ..   +....      .......+|+.+..+. .++++|.|.+++.+|+|.|.
T Consensus        39 ~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~  118 (267)
T 3u1s_H           39 SSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTADDTAIYY  118 (267)
T ss_dssp             CCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCChhhCEEEE
Confidence            46788887643  3457899998632 11   11111      0111235788877655 36789999999999999999


Q ss_pred             EEEEe-------CC-------------------CceEeEEEEEEc----CCcccccCCCCcEEEeCCCcEEEEeEecc-C
Q psy16425         70 CQVNT-------DP-------------------MKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG-S  118 (163)
Q Consensus        70 C~~~~-------~~-------------------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~  118 (163)
                      |.+.+       .+                   .......|.|..    +|.+...++..  ...+|+.+.|.|.+.+ .
T Consensus       119 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~--~~~~g~~~~l~C~~~~~~  196 (267)
T 3u1s_H          119 CLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSS--KSTSGGTAALGCLVKDYF  196 (267)
T ss_dssp             EEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCG--GGEETTEEEEEEEEEEEB
T ss_pred             EEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCc--ccCCCCcEEEEEEEeEEE
Confidence            99851       11                   011123455542    23332212111  1246899999999986 5


Q ss_pred             C-CCeEEEEECCeE
Q psy16425        119 P-KPNITWRREGGE  131 (163)
Q Consensus       119 p-~p~v~W~~~~~~  131 (163)
                      | .+.+.|  ++..
T Consensus       197 p~~~~v~W--~~~~  208 (267)
T 3u1s_H          197 PEPVTVSW--NSGA  208 (267)
T ss_dssp             SSCCEEEE--GGGT
T ss_pred             CCCeEEEE--CCcc
Confidence            6 457999  5543

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.18  E-value=1.6e-10  Score=69.59  Aligned_cols=82  Identities=16%  Similarity=0.225  Sum_probs=55.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCc----eEEee------eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQ----TILTI------QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~----~~~~~------~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .+++|.|...+.+...+.|||....    .+...      ........+|..+..++    +|.|.+++.+|+|.|+|.+
T Consensus        16 ~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ng----SL~I~nvt~~D~G~Ytc~v   91 (111)
T 2qsq_A           16 KEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA----SLLIQNIIQNDAGFYTLHV   91 (111)
T ss_dssp             SCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTS----CEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCC----cEEEccCcccCCeEEEEEE
Confidence            4789999876666678999994321    12111      01111246788887766    9999999999999999999


Q ss_pred             EeCCC--ceEeEEEEEEc
Q psy16425         73 NTDPM--KSQVGYLEVVV   88 (163)
Q Consensus        73 ~~~~~--~~~~~~l~v~~   88 (163)
                      .+...  ....+.|.|..
T Consensus        92 ~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           92 IKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             EETTSCCEEEEEEEEEEC
T ss_pred             EeCCCcEEEEEEEEEEec
Confidence            76632  34445565553

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.18  E-value=6.5e-10  Score=68.26  Aligned_cols=80  Identities=15%  Similarity=0.233  Sum_probs=51.8

Q ss_pred             ceeEEEeeeec---cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeC--C---CceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEML---MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHS--E---TKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~---~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~--~---~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|...+   .|.|.|.||| ++......     ....++.+...  .   ..+++|.|.+++..|+|.|+|++.+
T Consensus        23 ~~v~L~C~v~g~~~~p~P~V~W~K-gk~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn   96 (126)
T 2dav_A           23 EDITFIAKVKAEDLLRKPTIKWFK-GKWMDLAS-----KAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTY   96 (126)
T ss_dssp             CCEEEEEEEECCCSSSCCEEEEEE-SSSCCHHH-----HTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEEC
T ss_pred             CCEEEEEEEeccCCCCCCcEEEee-CcCcccCC-----CCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEe
Confidence            35778887655   3899999999 43111000     00122222110  0   1245899999999999999999977


Q ss_pred             C-CCceEeEEEEEEc
Q psy16425         75 D-PMKSQVGYLEVVV   88 (163)
Q Consensus        75 ~-~~~~~~~~l~v~~   88 (163)
                      . +..+..+.|.|.+
T Consensus        97 ~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           97 KDKFDSCSFDLEVHE  111 (126)
T ss_dssp             SSCEEEECCEEEEEC
T ss_pred             CCCcEEEEEEEEEEe
Confidence            6 4556778899988

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.18  E-value=4.6e-10  Score=84.37  Aligned_cols=121  Identities=13%  Similarity=0.088  Sum_probs=73.4

Q ss_pred             ceeEEEeeeeccCC--CEEEEEEcCCceEE-eee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAE--STVAWLRVDTQTIL-TIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~--~~i~W~k~~~~~~~-~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..+.|.|...+..+  ..|.|++ ++..+. ...  ......++.+...      ..|.|..+...|.|.|+|.+.+...
T Consensus       313 ~~~~L~C~v~g~~P~~~~i~W~k-~g~~~~~~~~~~~~~~~~~gt~~~~------s~L~i~~~~~~d~g~y~C~a~n~~~  385 (512)
T 1zvo_C          313 DKATFTCFVVGSDLKDAHLTWEV-AGKVPTGGVEEGLLERHSNGSQSQH------SRLTLPRSLWNAGTSVTCTLNHPSL  385 (512)
T ss_pred             CceEEEEEEeceECCCeEEEEEE-CCEeccCceeccceecCCCCeEEEE------EEEEEchHHhcCCCeEEEEEEeCCC
Confidence            35777888766533  4999999 554432 110  0111122333322      2699999999999999999977632


Q ss_pred             ceEeEEEEE------EcCCcccccCCCCcEEEeCCCcEE-EEeEeccCCCC--eEEEEECCeEEEec
Q psy16425         78 KSQVGYLEV------VVPPDILDYPTSTDMVIREGSNVT-LKCAASGSPKP--NITWRREGGELIAQ  135 (163)
Q Consensus        78 ~~~~~~l~v------~~~p~~~~~~~~~~~~~~~g~~~~-l~C~~~~~p~p--~v~W~~~~~~~~~~  135 (163)
                      ......+..      ..+|.+...+.. .    +|+.+. |.|.+.|++++  .+.|+++|..+...
T Consensus       386 ~~~~~~~~~~~~~~~~~~p~v~~~~~~-~----~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~  447 (512)
T 1zvo_C          386 PPQRLMALREPAAQAPVKLSLNLLASS-D----PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTS  447 (512)
T ss_pred             CCCceeEEeecCCCCCCCCEEEEEccC-c----CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCc
Confidence            221222222      234444333221 1    688899 99999985443  58999999887543

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.18  E-value=9.2e-10  Score=72.05  Aligned_cols=79  Identities=23%  Similarity=0.381  Sum_probs=60.5

Q ss_pred             EEEEcccCCCCCeEEEEEEEeC-CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC--eEEEEECC
Q psy16425         54 YLHIREVRESDRGWYMCQVNTD-PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP--NITWRREG  129 (163)
Q Consensus        54 ~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p--~v~W~~~~  129 (163)
                      .|.|.+++. | |.|.|.+... ......+.|.|..+|........ ...+.+|+.++|.|.+.| .|.+  .|+|++++
T Consensus        51 ~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l~V~~~P~~v~i~~~-~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~  127 (185)
T 1iam_A           51 VYELSNVQE-D-SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPL-PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGE  127 (185)
T ss_dssp             EEEEEEECS-C-BCCEEEEECSSCEEEEECEEEEEBCCSEEEECCC-CSEECTTSEEEEEEEEECCBCGGGEEEEEEETT
T ss_pred             EEEEEecCc-C-CEEEEEEECCCCceEEEEEEEEeCCCCCCEEccC-CccccCCCcEEEEEEcCCccCCCCcEEEEEeCC
Confidence            689999983 4 9999999655 34456678889888876555443 345889999999999987 5654  48999999


Q ss_pred             eEEEec
Q psy16425        130 GELIAQ  135 (163)
Q Consensus       130 ~~~~~~  135 (163)
                      ..+...
T Consensus       128 ~~l~~~  133 (185)
T 1iam_A          128 KELKRE  133 (185)
T ss_dssp             EEEEEE
T ss_pred             EEcccc
Confidence            988653

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.18  E-value=2.4e-10  Score=67.66  Aligned_cols=75  Identities=17%  Similarity=0.252  Sum_probs=53.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCC--eEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNH--RIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   80 (163)
                      .++.|.|...+ +.+.|.|++ ++..+.        ...  ++.+...+ ....|.|.+++.+|+|.|+|.+.+   ...
T Consensus        23 ~~v~l~C~~~~-~~~~v~W~k-~g~~l~--------~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~n---~~~   88 (103)
T 1x44_A           23 ERVELECEVSE-DDANVKWFK-NGEEII--------PGPKSRYRIRVEG-KKHILIIEGATKADAAEYSVMTTG---GQS   88 (103)
T ss_dssp             EEEEEEEECSS-SSCCCEEEE-TTEECC--------CSTTCSEEEEEET-TEEEEEEEEECTTTCSEEEEEETT---EEE
T ss_pred             CCEEEEEEecC-CCCeEEEEE-CCEECC--------CCCceEEEEEEcC-CEEEEEECCCCcccCEEEEEEECC---CcE
Confidence            36778888866 779999999 555442        222  44554432 345899999999999999999955   466


Q ss_pred             eEEEEEEcCCc
Q psy16425         81 VGYLEVVVPPD   91 (163)
Q Consensus        81 ~~~l~v~~~p~   91 (163)
                      .+.|.|..+|.
T Consensus        89 ~~~l~V~~~p~   99 (103)
T 1x44_A           89 SAKLSVDLKSG   99 (103)
T ss_dssp             EEEEEEECCCS
T ss_pred             EEEEEEeCCCC
Confidence            67788877654

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.18  E-value=1.5e-10  Score=67.55  Aligned_cols=68  Identities=18%  Similarity=0.337  Sum_probs=48.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.| +.|.|++ ++..+.        ...++... .+    .|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        25 ~~v~l~C~~~g~p-p~i~W~k-~g~~~~--------~~~~~~~~-~~----~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   89 (95)
T 2ckn_A           25 DLLQLRCRLRDDV-QSINWLR-DGVQLV--------ESNRTRIT-GE----EVEVRDSIPADSGLYACVTSSPSGSDTTY   89 (95)
T ss_dssp             SCEEEECCEESSC-CEEEEEB-TTBCCC--------CCSSEEEC-SS----EEEESSCCGGGSEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEECCCCC-CceEEEE-CCEecC--------CCCCEEEe-CC----EEEECCCChHHCEEEEEEeccCCCcEEEE
Confidence            3678889888887 7999999 565542        23444443 22    8999999999999999999776 333333


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        90 ~~l~   93 (95)
T 2ckn_A           90 FSVN   93 (95)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            3443

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.17  E-value=1.5e-10  Score=70.34  Aligned_cols=77  Identities=17%  Similarity=0.129  Sum_probs=51.0

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEE--eCC-CceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVT--HSE-TKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~--~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      ..+.|...+.|.+.|.|++ ++..+..        ..+....  ... ....+|.|.+++.+|+|.|+|.+.|. +....
T Consensus        23 ~~l~C~~~g~P~p~i~W~k-~g~~l~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~   93 (118)
T 1wwc_A           23 HCIEFVVRGNPPPTLHWLH-NGQPLRE--------SKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQ   93 (118)
T ss_dssp             EEEEEEEECSSCCEEEEEE-TTEECCC--------SSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             eEEEEEeeeeCCCeEEEEE-CCEECCC--------CCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEee
Confidence            4567888999999999999 5554421        1222211  111 12348999999999999999999776 33444


Q ss_pred             eEEEEEEcCC
Q psy16425         81 VGYLEVVVPP   90 (163)
Q Consensus        81 ~~~l~v~~~p   90 (163)
                      .+.|.+...|
T Consensus        94 ~~~l~v~~~P  103 (118)
T 1wwc_A           94 TINGHFLKEP  103 (118)
T ss_dssp             EEEECCSCCC
T ss_pred             EEEEEEccCC
Confidence            4555555554

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.16  E-value=4.7e-11  Score=71.28  Aligned_cols=74  Identities=23%  Similarity=0.240  Sum_probs=53.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+        ....++...... ...+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        30 ~~v~L~C~~~g~p~p~v~W~k-~g~~l--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   99 (106)
T 1nct_A           30 ESARFSCDTDGEPVPTVTWLR-KGQVL--------STSARHQVTTTK-YKSTFEISSVQASDEGNYSVVVENSEGKQEAE   99 (106)
T ss_dssp             SCEECCEEEECSSCCBCCBCS-SSSCC--------TTCSSEEEEECS-SEEEEEECCCCSSCCSEEEECCBCSSCBCCEE
T ss_pred             CcEEEEEEEEEcCCCEEEEEE-CCEEC--------CCCCCEEEEECC-CEEEEEECcCCchhCEEEEEEEEeCCCeEEEE
Confidence            367888999999999999999 55443        233455544422 3458999999999999999999766 444455


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus       100 ~~l~V  104 (106)
T 1nct_A          100 FTLTI  104 (106)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.16  E-value=3.7e-10  Score=65.84  Aligned_cols=71  Identities=14%  Similarity=0.103  Sum_probs=49.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.+.|...+ +.+.|.|+| ++..+.        ...|+.+...+ ...+|.|.+++.+|+|.|+|.+.|.   ...+
T Consensus        21 ~~v~l~C~v~~-~~~~v~W~k-~g~~i~--------~~~~~~i~~~g-~~~~L~I~~v~~~D~G~Y~C~a~n~---~~sa   86 (93)
T 1waa_A           21 ETAHFEIELSE-PDVHGQWKL-KGQPLA--------ASPDCEIIEDG-KKHILILHNCQLGMTGEVSFQAANT---KSAA   86 (93)
T ss_dssp             SCEEEEEEESS-SSCCCEEEE-TTEECC--------CBTTEEEEEET-TEEEEEECSCCGGGCEEEEEEETTE---EEEE
T ss_pred             CCEEEEEEECC-CCCeEEEEE-CCEECc--------CCCCEEEEEEC-CEEEEEECCCChhhCEEEEEEECCC---cEEE
Confidence            35777887765 557899999 666552        23455554433 3458999999999999999999542   3455


Q ss_pred             EEEEE
Q psy16425         83 YLEVV   87 (163)
Q Consensus        83 ~l~v~   87 (163)
                      .|.|.
T Consensus        87 ~L~V~   91 (93)
T 1waa_A           87 NLKVK   91 (93)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66665

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.16  E-value=4.5e-10  Score=65.45  Aligned_cols=72  Identities=18%  Similarity=0.328  Sum_probs=49.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+  .|.|.|++ ++..+        ....++.... +    +|.|.+++.+|+|.|+|.+.+. +.....
T Consensus        17 ~~~~l~C~~~~--~p~v~W~k-~g~~~--------~~~~~~~~~~-~----~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   80 (95)
T 4hwu_A           17 ESLELQCMLKD--AAVISWTK-DGVHL--------GPNNRTVLIG-E----YLQIKGATPRDSGLYACTAARTVDSETWI   80 (95)
T ss_dssp             SCEEEECCCCT--TCEEEEEE-TTEEE--------CCCSSEEEET-T----EEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CEEEEEEEeCC--CCEEEEEE-CCEEC--------CCCceEEEeC-C----EEEECcCCcccCEEEEEEEccCCCcEEEE
Confidence            46788888775  57999999 55554        2234554432 2    8999999999999999999765 433444


Q ss_pred             EEEEEEcCC
Q psy16425         82 GYLEVVVPP   90 (163)
Q Consensus        82 ~~l~v~~~p   90 (163)
                      +.|.|..++
T Consensus        81 ~~l~V~~~~   89 (95)
T 4hwu_A           81 FMVNVTDAA   89 (95)
T ss_dssp             EEEEECCC-
T ss_pred             EEEEEeCCc
Confidence            555555443

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=2.4e-10  Score=68.77  Aligned_cols=77  Identities=18%  Similarity=0.344  Sum_probs=55.4

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeEE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGY   83 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~   83 (163)
                      ++.|.|... .|.+.+.|++ ++..+.        ...++.+...+ ....|.|.+++.+|+|.|+|.+.+   ....+.
T Consensus        30 ~v~L~C~~~-~p~~~v~W~k-~g~~~~--------~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~   95 (113)
T 2cpc_A           30 RVVLTCELC-RPWAEVRWTK-DGEEVV--------ESPALLLQKED-TVRRLVLPAVQLEDSGEYLCEIDD---ESASFT   95 (113)
T ss_dssp             CEEEEEEES-CTTCCCEEEE-TTEECC--------CBTTBEEEECS-SEEEEEESSCCTTTCEEEEEESSS---CEEEEE
T ss_pred             eEEEEEEec-CCCCeEEEEE-CCEECc--------cCCCEEEEECC-CEEEEEECCCCcccCEEEEEEEec---CcEEEE
Confidence            567778774 7889999999 555442        22344444332 234899999999999999999966   566778


Q ss_pred             EEEEcCCcccc
Q psy16425         84 LEVVVPPDILD   94 (163)
Q Consensus        84 l~v~~~p~~~~   94 (163)
                      |.|..+|....
T Consensus        96 l~V~~~p~~~~  106 (113)
T 2cpc_A           96 VTVTEPPVRII  106 (113)
T ss_dssp             EEEECCCCCCC
T ss_pred             EEEecCCchhc
Confidence            88888875544

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.5e-10  Score=67.17  Aligned_cols=58  Identities=19%  Similarity=0.388  Sum_probs=43.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.| +.|.|++ ++..+.        ...++.+.. .    .|.|.+++.+|+|.|+|.+.+.
T Consensus        19 ~~v~L~C~~~g~p-p~i~W~k-~g~~~~--------~~~~~~~~~-~----~L~i~~v~~~D~G~Y~C~a~n~   76 (99)
T 2cr3_A           19 DLLQLRCRLRDDV-QSINWLR-DGVQLA--------ESNRTRITG-E----EVEVQDSVPADSGLYACVTSSP   76 (99)
T ss_dssp             SCEEEECCCCSSC-CEEEEEE-SSSBCC--------CCSSEEECS-S----EEEETTCCTTTCEEEEEEEEET
T ss_pred             CcEEEEEEecCCC-CeEEEEE-CCEECC--------CCCcEEEEC-C----EEEEccCCHHHCEEEEEEEEeC
Confidence            3678889888776 7999999 554431        233444432 2    8999999999999999999776

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.16  E-value=3.6e-11  Score=70.79  Aligned_cols=74  Identities=19%  Similarity=0.278  Sum_probs=48.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-CceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-MKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+...     .....+....   ...+|.|.+++.+|+|.|+|.+.|.. .....
T Consensus        24 ~~v~l~C~~~g~p~p~v~W~~-~~~~~~~~-----~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~   94 (100)
T 3caf_A           24 NTVKFRCPAGGNPMPTMRWLK-NGKEFKQE-----HRIGGYKVRN---QHWSLIMESVVPSDKGNYTCVVENEYGSINHT   94 (100)
T ss_dssp             CCEEEECCEEEESCCEEEEEE-TTEECCGG-----GSTTCCEEEG---GGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEEccccCCCEEEEEE-CCEEcccc-----cccccEEEec---CeEEEEEccCCcCCCEEEEEEEEeCCCEEEEE
Confidence            468899999999999999999 55443211     0011122221   12389999999999999999997763 33333


Q ss_pred             EEEE
Q psy16425         82 GYLE   85 (163)
Q Consensus        82 ~~l~   85 (163)
                      +.|.
T Consensus        95 ~~l~   98 (100)
T 3caf_A           95 YHLD   98 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            3443

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.5e-10  Score=68.63  Aligned_cols=75  Identities=17%  Similarity=0.250  Sum_probs=53.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|...+.|.+ |.|++ ++..+.        ...++.+...+ ....|.|.+++.+|+|.|+|.+.+.   ...+
T Consensus        26 ~~v~l~C~~~~~p~~-v~W~k-~g~~~~--------~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~n~---~~~~   91 (104)
T 2e6p_A           26 ERVVLTCELSRVDFP-ATWYK-DGQKVE--------ESELLVVKMDG-RKHRLILPEAKVQDSGEFECRTEGV---SAFF   91 (104)
T ss_dssp             SCEECCEECSSTTCC-CEEEE-TTEECC--------CBTTBEEEEET-TEEEEEESSCCTTTCEEEEEECSSC---CCCE
T ss_pred             CcEEEEEEecCCCCc-cEEee-CCEECC--------CCCCEEEEeCC-CEEEEEECCCChhhCEEEEEEECCc---eEEE
Confidence            357888888888888 99999 555442        22344443322 3458999999999999999999654   3466


Q ss_pred             EEEEEcCCc
Q psy16425         83 YLEVVVPPD   91 (163)
Q Consensus        83 ~l~v~~~p~   91 (163)
                      .|.|..+|.
T Consensus        92 ~l~V~~~P~  100 (104)
T 2e6p_A           92 GVTVQDPSG  100 (104)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEcCCCC
Confidence            788887664

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.15  E-value=1e-10  Score=69.96  Aligned_cols=79  Identities=18%  Similarity=0.249  Sum_probs=50.8

Q ss_pred             ceeEEEeeeeccCC---CEEEEEEcCCceEEeeeeeEEecCCeEEEEeC-----CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAE---STVAWLRVDTQTILTIQTHVITKNHRIGVTHS-----ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~---~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|...+.|.   +.|.||| ++......     ....++.+...     .....+|.|.+++.+|+|.|+|.+.|
T Consensus        20 ~~v~L~C~~~g~p~~~~p~v~W~k-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   93 (108)
T 3cx2_A           20 GSITFSARVAGASLLKPPVVKWFK-GKWVDLSS-----KVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVST   93 (108)
T ss_dssp             CCEEEEEEEECC-CCSCCEEEEEE-TTTEEGGG-----GCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEEEECCCccCCCcEEEEcc-CCcccccc-----cCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEec
Confidence            46889999988888   9999999 44211100     01123332210     11346899999999999999999977


Q ss_pred             C-CCceEeEEEEEE
Q psy16425         75 D-PMKSQVGYLEVV   87 (163)
Q Consensus        75 ~-~~~~~~~~l~v~   87 (163)
                      . +.....+.|.|.
T Consensus        94 ~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           94 KDKFDCSNFNLTVH  107 (108)
T ss_dssp             SSCEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEEe
Confidence            6 444555566653

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=7.4e-11  Score=69.31  Aligned_cols=60  Identities=18%  Similarity=0.313  Sum_probs=44.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+..        .... ..   .+...|.|.+++.+|+|.|+|.+.|.
T Consensus        27 ~~v~l~C~~~g~p~p~v~W~~-~g~~~~~--------~~~~-~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~   86 (99)
T 2yr3_A           27 QDFVLQCSVRGTPVPRITWLL-NGQPIQY--------ARST-CE---AGVAELHIQDALPEDHGTYTCLAENA   86 (99)
T ss_dssp             CCEEEECEEEEESCCCCEEEE-SSSBCSS--------CCCE-EE---TTEEEEEECSCCTTCCBCEEEEEECS
T ss_pred             CeEEEEEEEeeeCCCeEEEEE-CCEECcc--------cceE-ee---CCeEEEEECCCChhhCEEEEEEEEEC
Confidence            467889999999999999999 5544421        1111 11   12348999999999999999999776

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=99.14  E-value=1.9e-10  Score=76.27  Aligned_cols=132  Identities=16%  Similarity=0.161  Sum_probs=78.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEe-eeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeC-
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILT-IQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTD-   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~-~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~-   75 (163)
                      ..+.|.|.........+.||+.. +..   +.. .........+|+....+ ....++|.|.+++++|+|.|.|.+... 
T Consensus        16 ~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~   95 (200)
T 3rgv_A           16 DFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGT   95 (200)
T ss_dssp             CCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCEEEEEEEESSS
T ss_pred             CCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCccCCCEEEEeccCc
Confidence            46788888776556789999863 211   111 11111123467777643 346789999999999999999998532 


Q ss_pred             -CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCCeEEEEECCeEEEecC
Q psy16425         76 -PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKPNITWRREGGELIAQG  136 (163)
Q Consensus        76 -~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~~~~~~  136 (163)
                       ........|.|...... ..|. ..........+.|.|.+.+. |...+.|.++|..+....
T Consensus        96 ~~~fG~GT~L~V~~~~~~-~~P~-V~~~~~~~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~~~  156 (200)
T 3rgv_A           96 YQRFGTGTKLQVVPNIQN-PDPA-VYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDK  156 (200)
T ss_dssp             CCCCCCCEEEEEECCCSS-CCCE-EEEEEESSSSSCEEEEEESCCTTCCCCCCSSTTCEECCC
T ss_pred             ccccCcCEEEEEeCCCCC-CCCe-EEEccCCCCCceEEEEcccccCCeEeEeccCCcEEeecc
Confidence             12223346666543110 0010 00111122347899999874 544699999998775543

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.14  E-value=7.6e-11  Score=82.59  Aligned_cols=131  Identities=15%  Similarity=0.079  Sum_probs=41.7

Q ss_pred             eeEEEeeeeccCCC---EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC---
Q psy16425          4 RMLIEIGEMLMAES---TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM---   77 (163)
Q Consensus         4 ~~~~~~~~~~~~~~---~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~---   77 (163)
                      .+.|.|...+..+.   .|.||| ++..+....   ...         ......|.+......|.+.|+|++.+...   
T Consensus       103 ~~~LtC~v~g~~P~~~l~itW~k-g~~~l~~~~---~~~---------~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g  169 (291)
T 1mq8_A          103 NLTLRCQVEGGAPRANLTVVLLR-GEKELKREP---AVG---------EPAEVTTTVLVRRDHHGANFSCRTELDLRPQG  169 (291)
T ss_dssp             CCEEEEEECCCBSTTTEEEEEES-SSSEEEEEE---CCB---------TTEEEEEECCCSSSCSSCEEEEEEEEECGGGT
T ss_pred             CEEEEEEecCccCCCCcEEEEEE-CCEEeeccc---CCC---------CCceEEEEeeeeeccCCceEEEEEEecCCccC
Confidence            56677776554443   699999 555553221   000         11233677777777777799999976411   


Q ss_pred             ------ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCC---eEEEEECCeEEEecCCceEEeceEEEE
Q psy16425         78 ------KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKP---NITWRREGGELIAQGNGQEDFPFFKRT  148 (163)
Q Consensus        78 ------~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~v~W~~~~~~~~~~~~~~~~~~~l~i~  148 (163)
                            .+....|.|+++|........ ...+.+|+.+.|.|.+.|+|++   .+.|.++|+.+....  ..++..++++
T Consensus       170 ~~l~~~~s~~~~L~V~~~P~~~~~~~~-p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~--~~~g~~~~~~  246 (291)
T 1mq8_A          170 LELFENTSAPYQLQTFVLPATPPQLVS-PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV--TYGNDSFSAK  246 (291)
T ss_dssp             SCEEEECCCCEECBC-----------------------------------------------------------------
T ss_pred             CccccccccceEEEEEecCCCCceecC-CcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee--eecCCeEEEE
Confidence                  234457888887643221111 2257899999999999997554   599999998875432  2234444444


Q ss_pred             cc
Q psy16425        149 KK  150 (163)
Q Consensus       149 ~v  150 (163)
                      ..
T Consensus       247 ~~  248 (291)
T 1mq8_A          247 AS  248 (291)
T ss_dssp             --
T ss_pred             Ee
Confidence            33

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=99.14  E-value=6.1e-10  Score=74.07  Aligned_cols=117  Identities=16%  Similarity=0.189  Sum_probs=72.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---E-EeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---I-LTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~-~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .++.|.|...+.....|.||+... ..   + +..........+|+.+..+ ..++++|.|.+++.+|+|.|.|.+.+..
T Consensus        16 ~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~   95 (203)
T 2bnu_A           16 ENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTS   95 (203)
T ss_dssp             CCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEECS
T ss_pred             CCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcccCeEEEEEEEcCc
Confidence            468888887666556899998642 21   1 1111111123577877643 3467899999999999999999996531


Q ss_pred             ------CceEeEEEEEEcCCcccccCCCCcEEE--eCCCcEEEEeEecc-CCCCeE
Q psy16425         77 ------MKSQVGYLEVVVPPDILDYPTSTDMVI--REGSNVTLKCAASG-SPKPNI  123 (163)
Q Consensus        77 ------~~~~~~~l~v~~~p~~~~~~~~~~~~~--~~g~~~~l~C~~~~-~p~p~v  123 (163)
                            .......|.|...+... .|   ...+  .....+.|.|.+.| +|.|.+
T Consensus        96 ~~~~~~~~g~gt~L~V~~~~~~~-~P---~V~~~~~~~~~~~L~C~~~g~~P~p~v  147 (203)
T 2bnu_A           96 GGSYIPTFGRGTSLIVHPYIQNP-DP---AVYQLRRSKSSDKSVCLFTDFDSQTNV  147 (203)
T ss_dssp             SSTTCCEECCCEEEEEECCCSSC-CC---EEEEECCSSSSSCEEEEEESCCTTCCC
T ss_pred             CcceeeeeCCCEEEEEeCCCCCC-CC---eEEecCCCCCCcEEEEEccccccCccc
Confidence                  11133567776532100 00   1111  12347899999998 798877

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.13  E-value=7.7e-10  Score=73.27  Aligned_cols=77  Identities=14%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+        ....++...........|.|.+++.+|+|.|+|.+.|. +.....
T Consensus       133 ~~~~l~C~~~g~p~p~v~W~~-~~~~~--------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~  203 (212)
T 2r15_A          133 KALNLTCNVWGDPPPEVSWLK-NEKAL--------AQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSD  203 (212)
T ss_dssp             CCEEEEEEEECSSCCEEEEEE-TTEEE--------CCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEcCCCCceEEEEE-CCeEC--------ccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEE
Confidence            357888999999999999999 55554        23345555544344568999999999999999999776 444455


Q ss_pred             EEEEEEc
Q psy16425         82 GYLEVVV   88 (163)
Q Consensus        82 ~~l~v~~   88 (163)
                      +.|.|.+
T Consensus       204 ~~l~V~~  210 (212)
T 2r15_A          204 FTVSVFI  210 (212)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            5666654

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.6e-10  Score=68.74  Aligned_cols=76  Identities=18%  Similarity=0.153  Sum_probs=54.2

Q ss_pred             ceeEEEeeeeccCC-CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          3 ARMLIEIGEMLMAE-STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      .++.|.|...+.|. +.+.||| ++..+.        ...|+.+...+ ...+|.|.+++.+|+|.|+|.+.   .....
T Consensus        24 ~~v~l~C~v~~~~~~~~v~W~k-~g~~i~--------~~~r~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~---~~~~~   90 (104)
T 2eny_A           24 ESCSFECVLSHESASDPAMWTV-GGKTVG--------SSSRFQATRQG-RKYILVVREAAPSDAGEVVFSVR---GLTSK   90 (104)
T ss_dssp             CCEEEEEECSSCCCSSCBCCBS-SSSBCS--------BCSSCEEEEET-TEEEEEECSCCTTTCSCEEEEET---TEEEE
T ss_pred             CcEEEEEEEcCCCCCceeEEEE-CCEECC--------CCCCEEEEEcC-CEEEEEECCCCHHHCEEEEEEEC---CeeEE
Confidence            35788888877664 4799999 565542        23455544433 34589999999999999999883   34566


Q ss_pred             EEEEEEcCCc
Q psy16425         82 GYLEVVVPPD   91 (163)
Q Consensus        82 ~~l~v~~~p~   91 (163)
                      +.|.|..+|.
T Consensus        91 a~L~V~~~p~  100 (104)
T 2eny_A           91 ASLIVRERSG  100 (104)
T ss_dssp             ECEEEECCCS
T ss_pred             EEEEEeCCCc
Confidence            7888887764

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.12  E-value=4.1e-10  Score=68.63  Aligned_cols=90  Identities=16%  Similarity=0.177  Sum_probs=53.9

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCC--CceEEEEEcccCCCCCeEEEEEEEeC-CC
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSE--TKAWYLHIREVRESDRGWYMCQVNTD-PM   77 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~   77 (163)
                      ..+.|.|...+  .|.+.|.|++.+. .+....   .....+.......  ....+|.|.+++.+|+|.|+|.+.|. +.
T Consensus        24 ~~v~L~C~~~g~p~~~~~i~W~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~   99 (122)
T 3s35_X           24 EKLVLNCTARTELNVGIDFNWEYPSS-KHQHKK---LVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT   99 (122)
T ss_dssp             CCEEEEEEEEECTTCCCEEEEECSCT-TCCHHH---HBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             CeEEEEEEEEcCCCCcEEEEEECCCc-ccCCce---eeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCCc
Confidence            36788888877  5567899999543 211000   0001111111110  12347999999999999999999776 44


Q ss_pred             ceEeEEEEEEcCCcccccC
Q psy16425         78 KSQVGYLEVVVPPDILDYP   96 (163)
Q Consensus        78 ~~~~~~l~v~~~p~~~~~~   96 (163)
                      ....+.|.|..+|.+...+
T Consensus       100 ~~~~~~l~V~~~p~i~~~p  118 (122)
T 3s35_X          100 KKNSTFVRVHEKPFVAFGS  118 (122)
T ss_dssp             EEEEEEEEEEEEECC----
T ss_pred             eEEEEEEEEeccCeEEeec
Confidence            5566778888777766543

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.12  E-value=7.5e-10  Score=64.55  Aligned_cols=71  Identities=23%  Similarity=0.287  Sum_probs=49.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|.. +.|.+.|.|++ ++..+.        ...++.+...+ ...+|.|.+++.+|+|.|+|.+   +.....+
T Consensus        24 ~~v~l~C~~-~~p~~~v~W~k-~~~~l~--------~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a---g~~~~~~   89 (95)
T 2k1m_A           24 SPAVFEAET-ERAGVKVRWQR-GGSDIS--------ASNKYGLATEG-TRHTLTVREVGPADQGSYAVIA---GSSKVKF   89 (95)
T ss_dssp             SCEEEEEEC-SSSSCCCEEEC-SSSEEC--------SSTTCEEEEET-TEEEEEESSCCTTCCSEEEEEE---TTEEEEE
T ss_pred             CcEEEEEEe-CCCCCeEEEEE-CCEECC--------CCCcEEEEEcC-CEEEEEEcCCCcccCEEEEEEE---CCceEEE
Confidence            357788877 78889999999 555542        23344444333 2458999999999999999999   3344445


Q ss_pred             EEEEE
Q psy16425         83 YLEVV   87 (163)
Q Consensus        83 ~l~v~   87 (163)
                      .|.|.
T Consensus        90 ~l~V~   94 (95)
T 2k1m_A           90 DLKVI   94 (95)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            56553

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.12  E-value=3.5e-10  Score=68.73  Aligned_cols=86  Identities=17%  Similarity=0.216  Sum_probs=55.0

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCCceEEeee---eeEE--ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDTQTILTIQ---THVI--TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~---~~~~--~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|...+  .+...|.|++.+ ..+....   +...  ...+|+.+..    +++|.|.+++.+|+|.|+|.+.+.
T Consensus        19 ~~v~L~C~~~~~~~~~~~v~W~k~~-~~i~~~~~~~~~~~~~~~~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~v~~~   93 (117)
T 3q0h_A           19 GSIILQCHLSSTTAQVTQVNWEQQD-QLLAICNADLGWHISPSFKDRVAPGP----GLGLTLQSLTVNDTGEYFCIYHTY   93 (117)
T ss_dssp             CCEEECEEEESCCCEEEEEEEEETT-EEEEEEETTTEEECCGGGTTTEEECS----TTCEEECSCCGGGCEEEEEEEEEE
T ss_pred             CCEEEEEEecCCCCCEEEEEEEeCC-EEEEEEECCCCceeCccccCcEEeCC----ceEEEEeeCChhhCEEEEEEEEEC
Confidence            46888888765  445679999953 3332211   1111  2246776533    348999999999999999998543


Q ss_pred             --CCceEeEEEEEEcCCccc
Q psy16425         76 --PMKSQVGYLEVVVPPDIL   93 (163)
Q Consensus        76 --~~~~~~~~l~v~~~p~~~   93 (163)
                        +.....+.|.|.++|...
T Consensus        94 ~~g~~~~~~~L~V~~pp~~~  113 (117)
T 3q0h_A           94 PDGTYTGRIFLEVLESSVAE  113 (117)
T ss_dssp             TTCCEEEEEEEEEECC----
T ss_pred             CCCCeEEEEEEEEEccCccc
Confidence              455667788998887553

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=1.9e-10  Score=69.82  Aligned_cols=81  Identities=21%  Similarity=0.253  Sum_probs=51.4

Q ss_pred             ceeEEEeeeecc---CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeC--C---CceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM---AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHS--E---TKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~---~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~--~---~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|...+.   |.|.|.||| ++......     ....++.+...  .   ..+++|.|.+++..|+|.|+|++.+
T Consensus        28 ~~v~L~C~v~g~~~~p~P~V~W~K-gk~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn  101 (118)
T 2edn_A           28 KDAVVVAKVNGKELPDKPTIKWFK-GKWLELGS-----KSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKA  101 (118)
T ss_dssp             SCEECCEEEETTTSSSCCCCEEEE-TTTCCCCC-----STTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEEC
T ss_pred             CCEEEEEEEeccCCCCCCcEEEee-CCEeccCC-----CCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEE
Confidence            357777876653   789999999 43211100     00122222211  0   1246899999999999999999977


Q ss_pred             C-CCceEeEEEEEEcC
Q psy16425         75 D-PMKSQVGYLEVVVP   89 (163)
Q Consensus        75 ~-~~~~~~~~l~v~~~   89 (163)
                      . +..+..+.|.|..+
T Consensus       102 ~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A          102 KDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             SSCEEEEEECCEEECC
T ss_pred             cCCcEEEEEEEEEEcC
Confidence            6 55566777777653

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G

Probab=99.11  E-value=9.9e-10  Score=74.05  Aligned_cols=133  Identities=15%  Similarity=0.174  Sum_probs=77.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEe-eeeeEEecC-CeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILT-IQTHVITKN-HRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~-~~~~~~~~~-~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|.........+.||+.. +..   +.. ......... +|+....+ ....++|+|.+++++|+|.|.|.+...
T Consensus        25 ~sVtL~C~~s~~~~~~v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~~lq~~DSG~YyCa~~~~  104 (226)
T 3tjh_C           25 ASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVSAK  104 (226)
T ss_dssp             SCEEECCEEEESSCEEEEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEES
T ss_pred             CCEEEEEEEecCCCCeEEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcCCCCEEEEEEecCCcccCCCEEEEEEec
Confidence            45788888766556689999963 221   111 111111223 78877643 356889999999999999999998532


Q ss_pred             ---CC--ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCCeEEEEECCeEEEecCC
Q psy16425         76 ---PM--KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKPNITWRREGGELIAQGN  137 (163)
Q Consensus        76 ---~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~  137 (163)
                         ..  ......|.|...  +....+...........+.|.|.+.+ +|...+.|.+++..+.....
T Consensus       105 ~~~~~~~fG~GT~LtV~~~--~~~~~P~V~~~~~~~~~~tl~Cl~~~f~P~i~v~~~~~~~~~~~~~t  170 (226)
T 3tjh_C          105 GTGSKLSFGKGAKLTVSPN--IQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKC  170 (226)
T ss_dssp             SCSSSEEECCCEEEEEECC--CSSCCCEEEEEEECC---CEEEEEESCCTTCCCCCCSCTTEEECCCE
T ss_pred             CCccccccCCCeEEEEeCC--CCCCCCEEEEcccCCCCeEEEEEcccccCCcEEEeeccCceeecCce
Confidence               11  112245666532  10000000001111234789999987 56457999999988765543

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=99.11  E-value=1.6e-09  Score=73.26  Aligned_cols=131  Identities=18%  Similarity=0.219  Sum_probs=78.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEeeeeeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEEeCC-
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILTIQTHVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVNTDP-   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~~~~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-   76 (163)
                      ..+.|.|..... ...+.||+.. +..   +....... ...+|+.... .....++|+|.+++++|+|.|.|.+.... 
T Consensus        17 ~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~-~~~~Rfs~~~~~~~~~~sLtI~~lq~~DSG~Y~Ca~~~~~~   94 (229)
T 3mbe_C           17 ADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGT-KENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGS   94 (229)
T ss_dssp             CCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEESSEE-EEETTEEEEEETTTTEEEEEECSCCSTTCBEEEEEEECSSS
T ss_pred             CCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeCCCC-ccCCCEEEEECCCCCEEEEEEECCcccCCCCEEEEEEeCCC
Confidence            467888887666 6689999863 111   11111111 3357777764 33567899999999999999999996421 


Q ss_pred             ----CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCCeEEEEECCeEEEecCC
Q psy16425         77 ----MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKPNITWRREGGELIAQGN  137 (163)
Q Consensus        77 ----~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~  137 (163)
                          .......|.|...... ..|. ..........+.|.|.+.+. |...+.|.+++..+.....
T Consensus        95 ~~~~~fG~GT~L~V~~~~~~-p~P~-Vf~~~~~~~~vtl~Cl~~gf~P~i~v~~~~~~~~~~~~~t  158 (229)
T 3mbe_C           95 GNKLIFGTGTLLSVKPNIQN-PEPA-VYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKC  158 (229)
T ss_dssp             TTCEEECCCCEEEEECCCSS-CCCE-EEEEECTTCTTCEEEEEESCCSSSCCCCCCSSSEEECCCC
T ss_pred             cccceeCCCEEEEEecccCC-CCCE-EEEccCCCCCEEEEEEccccCCceEeEeeccCceEecCce
Confidence                1122235666542100 0000 00111122358899999874 5457999999988755443

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.10  E-value=1.3e-09  Score=65.57  Aligned_cols=75  Identities=21%  Similarity=0.341  Sum_probs=53.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      .++.|.|...+.  +.|.||+ ++..+        ....++.+...+ ....|.|.+++.+|+|.|+|.+   +.....+
T Consensus        35 ~~v~l~C~~~~~--p~v~W~k-~~~~l--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a---~~~~~~~   99 (113)
T 2edh_A           35 ATAVLRCELSKM--APVEWWK-GHETL--------RDGDRHSLRQDG-ARCELQIRGLVAEDAGEYLCMC---GKERTSA   99 (113)
T ss_dssp             SCEEEEEEESSC--CCCEEEE-SSSBC--------CCSSSEEEEEET-TEEEEEECSCCSTTCEEEEEEE---TTEEEEE
T ss_pred             CeEEEEEEECCC--CcEEEEE-CCEEC--------CCCCcEEEEECC-CEEEEEECCCChhhCEEEEEEe---CCCCEEE
Confidence            367788887654  6799999 55544        223555555443 3458999999999999999999   4556667


Q ss_pred             EEEEEcCCcc
Q psy16425         83 YLEVVVPPDI   92 (163)
Q Consensus        83 ~l~v~~~p~~   92 (163)
                      .|.|..+|..
T Consensus       100 ~l~V~~~p~~  109 (113)
T 2edh_A          100 MLTVRAMPSG  109 (113)
T ss_dssp             EEEECCCCCS
T ss_pred             EEEEeCCCCC
Confidence            7888776643

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.09  E-value=6.4e-10  Score=65.76  Aligned_cols=75  Identities=17%  Similarity=0.298  Sum_probs=54.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      .++.|.|...+.|.+ |.|++ ++..+        ....++.+...+ ...+|.|.+++.+|+|.|+|.+   +.....+
T Consensus        24 ~~v~l~C~~~~~p~~-v~W~k-~~~~l--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~---g~~~~~~   89 (103)
T 2e7b_A           24 GAATLRCVLSSVAAP-VKWCY-GNNVL--------RPGDKYSLRQEG-AMLELVVRNLRPQDSGRYSCSF---GDQTTSA   89 (103)
T ss_dssp             SCEEEEEECSSCCCS-CEEEE-SSSBC--------CCSSSEEEEECS-SEEEEEECSCCTTTCCCEEEEC---SSCBCCB
T ss_pred             CcEEEEEEEeCCCCC-eEEEE-CCEEC--------CCCCcEEEEEcC-CEEEEEEccCCcccCEEEEEEE---CCcEEEE
Confidence            468889998888888 99999 55544        223455555443 3457999999999999999983   3445556


Q ss_pred             EEEEEcCCc
Q psy16425         83 YLEVVVPPD   91 (163)
Q Consensus        83 ~l~v~~~p~   91 (163)
                      .|.|..+|.
T Consensus        90 ~l~V~~~p~   98 (103)
T 2e7b_A           90 TLTVTALPS   98 (103)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEeccc
Confidence            778877664

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.08  E-value=3.4e-10  Score=67.36  Aligned_cols=73  Identities=18%  Similarity=0.218  Sum_probs=50.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|...+.|.+ |.||+ ++..+.        ...++.+...+ ....|.|.+++.+|+|.|+|.+.|. .....+
T Consensus        24 ~~v~l~C~~~~~~~~-v~W~k-~g~~~~--------~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~-~~~~~~   91 (106)
T 2dlt_A           24 EQAVFKCEVSDEKVT-GKWYK-NGVEVR--------PSKRITISHVG-RFHKLVIDDVRPEDEGDYTFVPDGY-ALSLSA   91 (106)
T ss_dssp             CCEECCCEESCSSCE-EEEEE-SSCBCC--------CCSSCEEEEET-TEEEEEESSCCTTTCSCEEEEEETS-CCCCCB
T ss_pred             CeEEEEEEEcCCCcc-eEEEc-CCEECc--------CCCCEEEEEeC-CEEEEEECCCCcCCCEEEEEEEccC-CceEEE
Confidence            357788888887777 99999 555442        23444444332 3458999999999999999999776 444445


Q ss_pred             EEEEE
Q psy16425         83 YLEVV   87 (163)
Q Consensus        83 ~l~v~   87 (163)
                      .|.|.
T Consensus        92 ~l~V~   96 (106)
T 2dlt_A           92 KLNFL   96 (106)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            55555

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=1.1e-10  Score=68.94  Aligned_cols=77  Identities=18%  Similarity=0.215  Sum_probs=50.7

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeEE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGY   83 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~   83 (163)
                      .+.|.|...+.| +.|.|++ ++..+.....    ...++.+...+ ....|.|.+++.+|+|.|+|.+.+   ....+.
T Consensus        25 ~v~l~C~~~~~~-~~v~W~k-~g~~i~~~~~----~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~~~   94 (101)
T 2edk_A           25 RVEMAVEVSEEG-AQVMWMK-NGVELTREDS----FKARYRFKKDG-KRHILIFSDVVQEDRGRYQVITNG---GQCEAE   94 (101)
T ss_dssp             CCBCCEEESCSS-CCCEEEE-SSCBCCCSCC----SSCCCEEEECS-SEEEEECSSCCGGGCSBEEEECSS---CEECCB
T ss_pred             CEEEEEEEeCCC-CEEEEEE-CCEECCCCCC----cceeEEEEECC-CEEEEEECCCChhhCEEEEEEEcC---CcEEEE
Confidence            567788888777 8999999 5554421110    00044444332 345799999999999999999854   344456


Q ss_pred             EEEEcCC
Q psy16425         84 LEVVVPP   90 (163)
Q Consensus        84 l~v~~~p   90 (163)
                      |.|..+|
T Consensus        95 l~V~~~P  101 (101)
T 2edk_A           95 LIVEEKQ  101 (101)
T ss_dssp             EEEECCC
T ss_pred             EEEeCCC
Confidence            6666543

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.08  E-value=9.2e-10  Score=64.45  Aligned_cols=69  Identities=25%  Similarity=0.369  Sum_probs=47.3

Q ss_pred             ceeEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      .++.|.|... +.|.+.|.|++.+....          ..+. ....+    +|.|.+++.+|+|.|+|.+.|. +....
T Consensus        26 ~~v~l~C~~~~~~p~~~v~W~k~~~~~~----------~~~~-~~~~~----~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   90 (98)
T 1gl4_B           26 ADVTFICTAKSKSPAYTLVWTRLHNGKL----------PSRA-MDFNG----ILTIRNVQPSDAGTYVCTGSNMFAMDQG   90 (98)
T ss_dssp             CCEEEEEEEEESSSCCEEEEEEGGGBCC----------CTTE-EEETT----EEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCEEEEEeCCCCCCCcEEEEEeCCCCCC----------Ccee-ecCCC----EEEEeCCChhhCEEEEEEecCCCCcccc
Confidence            4678889887 68999999999533221          0111 12222    8999999999999999999776 33344


Q ss_pred             eEEEEE
Q psy16425         81 VGYLEV   86 (163)
Q Consensus        81 ~~~l~v   86 (163)
                      .+.|.|
T Consensus        91 ~~~l~V   96 (98)
T 1gl4_B           91 TATLHV   96 (98)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            445554

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.7e-09  Score=63.90  Aligned_cols=75  Identities=13%  Similarity=0.154  Sum_probs=53.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      .++.|.|. .+.|.+.|.|++ ++..+        ....++.+...+ ....|.|.+++.+|+|.|+|.   .+.....+
T Consensus        24 ~~v~l~C~-~~~p~~~v~W~k-~~~~l--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~---~g~~~~~~   89 (103)
T 2dku_A           24 GTAVFTCK-TEHPAATVTWRK-GLLEL--------RASGKHQPSQEG-LTLRLTISALEKADSDTYTCD---IGQAQSRA   89 (103)
T ss_dssp             SEEEEEEE-CSSCCSCCEEEE-SSCBC--------CSSSSEEEEEET-TEEEEEEESCCTTTCSEEEEE---CSSCBCCE
T ss_pred             CcEEEEEE-eCCCCCeEEEEe-CCEEC--------CCCCeEEEEeCC-CEEEEEECCCCcccCEEEEEE---eCCceEEE
Confidence            36778888 578889999999 55544        223455544322 345899999999999999998   34445567


Q ss_pred             EEEEEcCCc
Q psy16425         83 YLEVVVPPD   91 (163)
Q Consensus        83 ~l~v~~~p~   91 (163)
                      .|.|...|.
T Consensus        90 ~l~V~~~p~   98 (103)
T 2dku_A           90 QLLVQGRRS   98 (103)
T ss_dssp             EEEEECSCC
T ss_pred             EEEEeCccC
Confidence            788877654

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=8.9e-10  Score=65.00  Aligned_cols=73  Identities=15%  Similarity=0.266  Sum_probs=51.2

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeEE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGY   83 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~   83 (163)
                      .+.|.|... .|.+.|.|++ ++..+        ....++.+...+ ....|.|.+++.+|+|.|+|.+.   .....+.
T Consensus        28 ~v~L~C~~~-~p~~~v~W~k-~g~~~--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~---~~~~~~~   93 (102)
T 2eo1_A           28 SATLSCEVA-QAQTEVTWYK-DGKKL--------SSSSKVRVEAVG-CTRRLVVQQAGQAEAGEYSCEAG---GQQLSFR   93 (102)
T ss_dssp             CEEECCBCS-CSSSCCEEEE-TTEEC--------CCCSSEEEEEET-TEEEEEETTCCTTTCSCEEEEET---TEECCEE
T ss_pred             cEEEEEEec-CCCCceEEEE-CCEEC--------CCCCCEEEEEcC-CEEEEEECCCCcccCEEEEEEcC---CCcEEEE
Confidence            577888876 8889999999 55544        223344444332 23489999999999999999983   2344567


Q ss_pred             EEEEcCC
Q psy16425         84 LEVVVPP   90 (163)
Q Consensus        84 l~v~~~p   90 (163)
                      |.|..+|
T Consensus        94 l~V~~p~  100 (102)
T 2eo1_A           94 LQVAGQC  100 (102)
T ss_dssp             EEEESCC
T ss_pred             EEEeCCC
Confidence            7777654

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.06  E-value=5.4e-10  Score=68.71  Aligned_cols=86  Identities=15%  Similarity=0.135  Sum_probs=54.4

Q ss_pred             cceeEEEeeeeccCC---CEEEEEEcCCce-EE-eeeee------EEecCCeEEEEeCC--CceEEEEEcccCCCCCeEE
Q psy16425          2 AARMLIEIGEMLMAE---STVAWLRVDTQT-IL-TIQTH------VITKNHRIGVTHSE--TKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~---~~i~W~k~~~~~-~~-~~~~~------~~~~~~r~~~~~~~--~~~~~L~i~~v~~~d~G~Y   68 (163)
                      ..++.|.|...+.+.   ..|.|+|.+... +. ...+.      .....+|+.+....  .++++|.|.+++++|+|.|
T Consensus        20 G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~D~G~Y   99 (125)
T 4gos_A           20 GEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDAGTY   99 (125)
T ss_dssp             TSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChHHCEEE
Confidence            457889998654332   479999954322 11 11111      12235677766554  3578999999999999999


Q ss_pred             EEEEEeCCCceEeEEEEEEc
Q psy16425         69 MCQVNTDPMKSQVGYLEVVV   88 (163)
Q Consensus        69 ~C~~~~~~~~~~~~~l~v~~   88 (163)
                      +|.+.+. .....+.+++.+
T Consensus       100 ~C~v~~~-~g~~~~~v~LkV  118 (125)
T 4gos_A          100 KCYIITS-KGKGNANLEYKT  118 (125)
T ss_dssp             EEEEEET-TEEEEEEEEEEE
T ss_pred             EEEEEeC-CCeEEEEEEEEE
Confidence            9999664 344445555544

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.06  E-value=1.9e-09  Score=64.08  Aligned_cols=60  Identities=18%  Similarity=0.290  Sum_probs=43.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|.. +.|.+.|.|++ ++..+..       ...++.+...+ ...+|.|.+++.+|+|.|+|.+
T Consensus        32 ~~v~L~C~~-~~p~~~v~W~k-~g~~l~~-------~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a   91 (104)
T 1pd6_A           32 HKIRLTVEL-ADHDAEVKWLK-NGQEIQM-------SGSKYIFESIG-AKRTLTISQCSLADDAAYQCVV   91 (104)
T ss_dssp             SCEEEEEEC-SSSSSCCEEEE-SSSEECC-------CSSSSEEEEET-TEEEEEECSCSSSSCEEEEEEE
T ss_pred             CCEEEEEEE-cCCCCEEEEEE-CCEECCC-------CCCeEEEEecC-CEEEEEECCCCcccCEEEEEEE
Confidence            357788877 68888999999 5655421       11445544333 2458999999999999999999

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.05  E-value=1.2e-09  Score=72.85  Aligned_cols=61  Identities=20%  Similarity=0.359  Sum_probs=46.1

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|...+. |.|.|.|+| ++..+..        ..++   ....+..+|.|.+++.+|+|.|+|.+.|.
T Consensus       132 ~~v~l~C~v~g~~P~p~i~W~k-~g~~l~~--------~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  193 (207)
T 3rbs_A          132 CNVLLKCKVANIKKETHIVWYK-DEREISV--------DEKH---DFKDGICTLLITEFSKKDAGIYEVILKDD  193 (207)
T ss_dssp             TEEEEEEEEESCCTTCEEEEEE-TTEEECC--------CCCC---CCSSEEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CcEEEEEEEeCCCCCCEEEEEE-CCEECCC--------CCce---EcCCCEEEEEECCCCcccCEEEEEEEEcC
Confidence            468899999998 999999999 6665522        2222   11123457999999999999999999776

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=99.04  E-value=1.3e-09  Score=73.85  Aligned_cols=122  Identities=17%  Similarity=0.211  Sum_probs=73.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---E-EeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---I-LTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~-~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|.........+.||+... ..   + +..........+|+.+..+ ..++++|.|.+++.+|+|.|.|.+.+..
T Consensus        17 ~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~   96 (229)
T 2q86_A           17 ENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRG   96 (229)
T ss_dssp             CCEEEEEEECCSCCSCEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGG
T ss_pred             CCEEEEEEECCCCCcEEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEcccCcccCccEEEEEEecC
Confidence            468888887666667899998642 21   1 1111111233577877653 3467899999999999999999985421


Q ss_pred             --CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCCeEEEE
Q psy16425         77 --MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKPNITWR  126 (163)
Q Consensus        77 --~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~v~W~  126 (163)
                        .......|.|...+... .|. ..........+.|.|.+.+ +|.|.+.+.
T Consensus        97 ~~~~g~gt~L~V~~~~~~~-~P~-V~~~~~~~~~~tL~Cl~~gf~P~p~V~~~  147 (229)
T 2q86_A           97 SALFGSGTQLIVIPYIQNP-EPA-VYQLKDPRSQDSTLCLFTDFDSQINVPKT  147 (229)
T ss_dssp             GCEECCCEEEEEECCCSSC-CCE-EEEEECTTSTTCEEEEEEEECTTCCCCCC
T ss_pred             cccccCCEEEEEECcCCCC-CCE-EEEccCCCCCeEEEEEECCcCcCCccccc
Confidence              11223466666422100 010 0111112337899999987 688877553

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.04  E-value=5.9e-09  Score=64.95  Aligned_cols=86  Identities=17%  Similarity=0.129  Sum_probs=55.1

Q ss_pred             ceeEEEeeeeccC---CCEEEEEEcCCc-eEEee-eeeE------EecCCeEEEEeCC--CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLMA---ESTVAWLRVDTQ-TILTI-QTHV------ITKNHRIGVTHSE--TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~~---~~~i~W~k~~~~-~~~~~-~~~~------~~~~~r~~~~~~~--~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|...+.+   .+.|.|++.+.. .+... .+..      ....+|+.+....  .++++|.|.+++.+|+|.|+
T Consensus        22 ~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~  101 (139)
T 1pko_A           22 DEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYT  101 (139)
T ss_dssp             SCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCHHHCEEEE
Confidence            4688888876544   378999995432 22111 1110      1224677776542  35679999999999999999


Q ss_pred             EEEEeCC-CceEeEEEEEEc
Q psy16425         70 CQVNTDP-MKSQVGYLEVVV   88 (163)
Q Consensus        70 C~~~~~~-~~~~~~~l~v~~   88 (163)
                      |.+.+.. .....+.|.|..
T Consensus       102 C~v~~~~~~~~~~~~L~V~~  121 (139)
T 1pko_A          102 CFFRDHSYQEEAAVELKVED  121 (139)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEcCCCceEEEEEEEEec
Confidence            9997653 334455677763

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=3.5e-09  Score=63.71  Aligned_cols=83  Identities=10%  Similarity=0.085  Sum_probs=54.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   80 (163)
                      .++.+.|...+  .+.+.||+ ++..+....  ........|+.+...+ ...+|.|.+++.+|+|.|+|...+  ....
T Consensus        24 ~~a~f~C~vs~--~p~v~W~k-nG~~l~~~~~~~~~~~~~~r~~i~~~g-~~~~L~I~~v~~~D~G~Y~~~~~~--~~~s   97 (112)
T 2e6q_A           24 EDAVFSLDLST--IIQGTWFL-NGEELKSNEPEGQVEPGALRYRIEQKG-LQHRLILHAVKHQDSGALVGFSCP--GVQD   97 (112)
T ss_dssp             CEEEEEEEESS--CCCCEEEE-SSCBCCSSCCCTTSCTTSCEEEECCBT-TEEEEEEESCCSTTCSEEEEEEET--TEEE
T ss_pred             CcEEEEEEECC--CCeEEEEE-CCEECccCcccccccccccEEEEEeCC-cEEEEEECCCCHHHCccEEEEEEC--CeeE
Confidence            46788888876  77899999 666663211  0000000166655443 345899999999999999886532  3355


Q ss_pred             eEEEEEEcCCc
Q psy16425         81 VGYLEVVVPPD   91 (163)
Q Consensus        81 ~~~l~v~~~p~   91 (163)
                      .+.|.|..+|.
T Consensus        98 sA~L~V~~~p~  108 (112)
T 2e6q_A           98 SAALTIQESSG  108 (112)
T ss_dssp             EEEEEEECSSC
T ss_pred             EEEEEEeCCCc
Confidence            77888887764

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.04  E-value=2.2e-10  Score=68.53  Aligned_cols=67  Identities=24%  Similarity=0.408  Sum_probs=52.0

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      +|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+....+...    ....|.|.+++.+|.+.
T Consensus        13 pP~f~~~p--~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   83 (107)
T 3knb_B           13 PPCFLRFP--RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGV   83 (107)
T ss_dssp             EEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEE
T ss_pred             CCEEEeCC--CcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEE
Confidence            34444433  356788999999999999999999999999999876654432    22479999999999763

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.03  E-value=1.8e-10  Score=68.08  Aligned_cols=67  Identities=31%  Similarity=0.602  Sum_probs=50.8

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc--eE----EeceEEEEcchhhhHhh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG--QE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~--~~----~~~~l~i~~v~~~~~~~  157 (163)
                      +|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+......  ..    ....|.|.+++.+|.+.
T Consensus         5 PP~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   77 (100)
T 3knb_A            5 PPKIEALP--SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGL   77 (100)
T ss_dssp             EEEECCCC--SEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEE
T ss_pred             CCEEEeCC--CcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEE
Confidence            34444433  3677899999999999999999999999999988654322  11    23579999999999763

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.03  E-value=8.3e-09  Score=74.39  Aligned_cols=117  Identities=12%  Similarity=0.186  Sum_probs=72.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+..      ....++.....+ ....|.|.+++.+|+|.|+|.+.|. +.....
T Consensus       116 ~~~~l~C~~~g~p~~~i~W~~-~g~~l~~------~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~  187 (389)
T 2jll_A          116 NPINISCDVKSNPPASIHWRR-DKLVLPA------KNTTNLKTYSTG-RKMILEIAPTSDNDFGRYNCTATNHIGTRFQE  187 (389)
T ss_dssp             CCEEEEECEEEESCCEEEEEE-TTEESSC------TTCTTEEEEECS-SCEEEEECCCSTTSSEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEEEEecCCCeEEEEE-CCccCCc------ccCceEEEeccC-CEEEEEECCCChhhCEEEEEEEEcCCCcEEEE
Confidence            357889999999999999999 5544321      111244444332 3458999999999999999999776 333444


Q ss_pred             EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc----CCCC--eEEEEECCe
Q psy16425         82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG----SPKP--NITWRREGG  130 (163)
Q Consensus        82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~----~p~p--~v~W~~~~~  130 (163)
                      +.+.+...|....   ........+..+.|.|....    .|..  .+.|..++.
T Consensus       188 ~~l~v~~~P~~P~---~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~  239 (389)
T 2jll_A          188 YILALADVPSSPY---GVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS  239 (389)
T ss_dssp             EEEEECCCCCCCE---EEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTC
T ss_pred             EEEEecCCCCCCc---ceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCC
Confidence            4555544443221   11222334567888887432    2322  467877654

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=99.02  E-value=1.3e-09  Score=72.58  Aligned_cols=134  Identities=14%  Similarity=0.122  Sum_probs=77.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeCC-
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTDP-   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-   76 (163)
                      ..+.|.|.........+.||+.. +..   +...........+|+....+ ....++|+|.+++++|+|.|.|.+.... 
T Consensus        18 ~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~DsG~Y~Ca~~~~~~   97 (208)
T 4ei6_A           18 GMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNN   97 (208)
T ss_dssp             CCEECEEEECCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEECSCCGGGCEEEEEEEEECCS
T ss_pred             CCEEEEEEEcCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEEEeCcccCCCcEEEEEecCCC
Confidence            45788888766555689999863 111   11111111114577777643 3467899999999999999999985321 


Q ss_pred             -----CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCCeEEEEECCeEEEecCCc
Q psy16425         77 -----MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKPNITWRREGGELIAQGNG  138 (163)
Q Consensus        77 -----~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~~  138 (163)
                           .......|.|....... .|. ..........+.|.|.+.+. |...++|.+++..+...+..
T Consensus        98 ~~~~~~fG~GT~L~V~~~~~~~-~Ps-Vf~l~~~~~~~tl~Cl~~~f~P~i~v~~~~~~~~~~~~~~~  163 (208)
T 4ei6_A           98 YAQGLTFGLGTRVSVFPYIQNP-DPA-VYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCV  163 (208)
T ss_dssp             SCCCCEECCCEEEEEECCCSSC-CCE-EEEEEBSSCTTCEEEEEESCCTTCCCCCCSSTTCEECCCEE
T ss_pred             ccccccCCCCEEEEEeCcccCC-CCE-EEEcccCCCCceEEEEeeccCCceEeeecccCcEEEeCCEE
Confidence                 11233456665421000 010 00011111236789999875 53469999998877655443

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.02  E-value=6.7e-10  Score=64.21  Aligned_cols=56  Identities=13%  Similarity=0.255  Sum_probs=43.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+.        ...          ...|.|.+++.+|+|.|+|.+.+...
T Consensus        19 ~~~~l~C~~~g~p~p~i~W~~-~~~~~~--------~~~----------~~~L~i~~v~~~d~G~Y~C~a~n~~g   74 (91)
T 3bfo_A           19 STLVLQCVAVGSPIPHYQWFK-NELPLT--------HET----------KKLYMVPYVDLEHQGTYWCHVYNDRD   74 (91)
T ss_dssp             SCEEEECEEECSSCCEEEEEE-TTEECT--------TCC----------SSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CcEEEEEEeccCCCCEEEEEc-CCeeCC--------cCC----------CCeEEECCCCHHhCEEEEEEEEcCCC
Confidence            468899999999999999999 554331        111          12799999999999999999977633

>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D

Probab=99.02  E-value=4.3e-09  Score=70.63  Aligned_cols=118  Identities=16%  Similarity=0.208  Sum_probs=70.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c---eE-EeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q---TI-LTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~---~~-~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|... .....+.||+... .   .+ +..........+|+.+..+ ..++++|.|.+++.+|+|.|.|.+....
T Consensus        17 ~~vtL~C~~~-~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~   95 (215)
T 1oga_D           17 ENLTVYCNSS-SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQ   95 (215)
T ss_dssp             CCEEEEEECS-SCCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECTT
T ss_pred             CCEEEEEEEc-CCCceEEEEEeCCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEeccc
Confidence            4678888763 3456799998642 1   11 1111111223578887754 3467899999999999999999996431


Q ss_pred             C---ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCCeE
Q psy16425         77 M---KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKPNI  123 (163)
Q Consensus        77 ~---~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~v  123 (163)
                      .   ......|.|...+... .|. .......++.+.|.|.+.+ +|.|.+
T Consensus        96 ~~~~fg~gt~L~V~~~~~~~-~P~-V~~~~~~~~~vtL~C~~~gf~P~p~v  144 (215)
T 1oga_D           96 GNLIFGKGTKLSVKPNIQNP-DPA-VYQLRDSKSSDKSVCLFTDFDSQTNV  144 (215)
T ss_dssp             SSEEECCCEEEEEECCCSSC-CCE-EEEEEBSSSSSCEEEEEESCCTTCCC
T ss_pred             ccceeCCCEEEEEeccCCCc-CCE-EEEcCCCCCCeEEEEEccccccCccc
Confidence            1   1123467776532111 010 0111112347899999987 788866

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.01  E-value=3.1e-09  Score=63.61  Aligned_cols=82  Identities=26%  Similarity=0.362  Sum_probs=53.1

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeee---ee-EE--ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQ---TH-VI--TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~---~~-~~--~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|.. .+.+.+.|.||+..+..+....   .. ..  ...+|+.+..   ++++|.|.+++.+|+|.|.|.+.+.
T Consensus        19 ~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~---~~~sL~I~~v~~~DsG~Y~C~v~~~   95 (110)
T 2ptt_A           19 SNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE---NNGALHISNVRKEDKGTYYMRVLRE   95 (110)
T ss_dssp             SCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECT---TTCCEEESSCCGGGCEEEEEEEESS
T ss_pred             CcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeC---CCccEEECCCCcccCeEEEEEEEcC
Confidence            468888987 6677789999994343332110   10 11  1225666542   3458999999999999999999655


Q ss_pred             CCceEeEEEEEE
Q psy16425         76 PMKSQVGYLEVV   87 (163)
Q Consensus        76 ~~~~~~~~l~v~   87 (163)
                      ......+.|.|.
T Consensus        96 ~~~~~~~~L~V~  107 (110)
T 2ptt_A           96 TENELKITLEVF  107 (110)
T ss_dssp             SBCCEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            433445556655

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.01  E-value=2.3e-09  Score=64.00  Aligned_cols=72  Identities=17%  Similarity=0.275  Sum_probs=49.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|...+.+.+.|.||+... ..   +... .........|+.... ..+.++|.|.+++++|+|.|.|.+.+.
T Consensus        17 ~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~n~   93 (108)
T 1jhl_L           17 ETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG-SGTDFTLTISSLEPEDFAMYICQQHNE   93 (108)
T ss_dssp             SCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-SSSEEEEEECSCCTTCCSEEEEEECSS
T ss_pred             CCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe-cCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            468899998888889999999642 11   1111 110011246776654 335678999999999999999999654

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=99.01  E-value=1.9e-10  Score=76.22  Aligned_cols=128  Identities=16%  Similarity=0.214  Sum_probs=76.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEee-eeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILTI-QTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~~-~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|.........+.||+.. +..   +... ........+|+....+ ....++|.|.+++.+|+|.|.|.+....
T Consensus        16 ~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~   95 (199)
T 3gsn_A           16 DSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGN   95 (199)
T ss_dssp             CCCEEEEECCCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCGGGCEEEEEEEESSS
T ss_pred             CCEEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCcccCCccEEEEEcccc
Confidence            45788888766556689999863 211   1111 1111112456665532 3467899999999999999999985321


Q ss_pred             C--ceEeEEEEEEcC---C--cccccCCCCcEEEeCCCcEEEEeEeccC-CCCeEEEEECCeEEEecCC
Q psy16425         77 M--KSQVGYLEVVVP---P--DILDYPTSTDMVIREGSNVTLKCAASGS-PKPNITWRREGGELIAQGN  137 (163)
Q Consensus        77 ~--~~~~~~l~v~~~---p--~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~  137 (163)
                      .  ......|.|...   +  .+.. +..      ....+.|.|.+.+. |...+.|.+++..+.....
T Consensus        96 ~~~fG~GT~L~V~~~~~~~~P~V~~-~~~------~~~~~tl~Cl~~gf~P~i~~~~~~~~~~~~~~~t  157 (199)
T 3gsn_A           96 QFYFGTGTSLTVIPNIQNPDPAVYQ-LRD------SKSSDKSVCLFTDFDSQTNVSQSKDSDAYITDKT  157 (199)
T ss_dssp             CEEECSCEEEEEECCCSSCCCEEEE-CCC------SSSSSSCCEEEETCCTTCCSSCSSCSSEEECCCB
T ss_pred             cccCCCCEEEEEecccCCCCCEEEE-ccc------CCCCceEEEEeecccCCeEeEeccCCCeEecCce
Confidence            1  122345666542   1  1111 110      11236789999875 5446899999988765443

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.99  E-value=4e-09  Score=62.77  Aligned_cols=74  Identities=19%  Similarity=0.326  Sum_probs=51.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|...+.  +.|.|++ ++..+        ....++.+...+ ...+|.|.+++.+|+|.|+|.+.   .....+
T Consensus        24 ~~v~l~C~~~~~--p~v~W~k-~~~~~--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~---n~~~~~   88 (108)
T 2dm7_A           24 ATATLQCELSKV--APVEWKK-GPETL--------RDGGRYSLKQDG-TRCELQIHDLSVADAGEYSCMCG---QERTSA   88 (108)
T ss_dssp             SCEEEEEEBSSS--CCCEEES-SSSBC--------CSSSSCEEEEET-TEEEEEESSCCTTTCSEEEEEET---TEEEEE
T ss_pred             CcEEEEEEeCCC--CeeEEEE-CCEEC--------CCCCCEEEEecC-CEEEEEECCCCcccCEEEEEEEc---CCEEEE
Confidence            357788877654  6899999 45443        223455555433 34579999999999999999993   345666


Q ss_pred             EEEEEcCCc
Q psy16425         83 YLEVVVPPD   91 (163)
Q Consensus        83 ~l~v~~~p~   91 (163)
                      .|.|...|.
T Consensus        89 ~l~V~~~p~   97 (108)
T 2dm7_A           89 TLTVRALPA   97 (108)
T ss_dssp             ECEEECCCS
T ss_pred             EEEEecCCH
Confidence            788877554

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=98.98  E-value=1.4e-09  Score=71.92  Aligned_cols=117  Identities=14%  Similarity=0.161  Sum_probs=70.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEe-eeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeC-
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILT-IQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTD-   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~-~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~-   75 (163)
                      ..+.|.|.........|.||+.. +..   +.. .........+|+.+..+. .++++|.|.+++.+|+|.|.|.+.+. 
T Consensus        17 ~~v~L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~   96 (194)
T 1lp9_E           17 LPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLAS   96 (194)
T ss_dssp             SCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEECS
T ss_pred             CCEEEEEEeCCCCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCcccCeeEEEEEeccc
Confidence            46788888766666789999964 221   111 111111235677766432 35678999999999999999999652 


Q ss_pred             ---CC--ceEeEEEEEEcCCcccccCCCCcEEE--eCCCcEEEEeEecc-CCCCeE
Q psy16425         76 ---PM--KSQVGYLEVVVPPDILDYPTSTDMVI--REGSNVTLKCAASG-SPKPNI  123 (163)
Q Consensus        76 ---~~--~~~~~~l~v~~~p~~~~~~~~~~~~~--~~g~~~~l~C~~~~-~p~p~v  123 (163)
                         ..  ......|.|...+.. ..|   ...+  ...+.+.|.|.+.+ +|.|.|
T Consensus        97 ~~~~~~~~g~gt~L~V~~~~~~-~~P---~V~~~~~~~~~~tL~Cl~~gf~P~~~V  148 (194)
T 1lp9_E           97 SSFSKLVFGQGTSLSVVPNIQN-PEP---AVYQLKDPRSQDSTLCLFTDFDSQINV  148 (194)
T ss_dssp             SSSCEEEECCCEEEEEECCCSS-CCC---EEEEEECTTSSSCEEEEEESCCTTSCC
T ss_pred             CCcceeeeccCceEEecCcCCC-CCC---eeEecCCCCCCcEEEEEeecccCCccc
Confidence               11  112346666543110 001   1111  12346899999988 688877

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.98  E-value=7.3e-09  Score=62.25  Aligned_cols=88  Identities=13%  Similarity=0.208  Sum_probs=54.8

Q ss_pred             ceeEEEeeeeccCC-CEEEEEEcCCc--e--EEee-eeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAE-STVAWLRVDTQ--T--ILTI-QTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-~~i~W~k~~~~--~--~~~~-~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|....... ..+.||+....  .  +... +.......+|+.+... ..+.++|.|.+++.+|+|.|.|.+.+.
T Consensus        17 ~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~~~   96 (113)
T 1zox_A           17 GSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKG   96 (113)
T ss_dssp             SCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCS
T ss_pred             CcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeEcC
Confidence            46788888765443 36999996421  1  1111 1111123467776643 346789999999999999999999655


Q ss_pred             C-CceEeEEEEEEcCC
Q psy16425         76 P-MKSQVGYLEVVVPP   90 (163)
Q Consensus        76 ~-~~~~~~~l~v~~~p   90 (163)
                      + .....+.|.|..+|
T Consensus        97 ~~~~~~~v~L~V~~~p  112 (113)
T 1zox_A           97 GLDPMFKVTVNIGPVP  112 (113)
T ss_dssp             SSCCEEEEEEEEECC-
T ss_pred             CCCccEEEEEEEEcCC
Confidence            3 33455566665443

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.98  E-value=5e-09  Score=63.81  Aligned_cols=88  Identities=18%  Similarity=0.189  Sum_probs=53.3

Q ss_pred             ceeEEEeeeec----cCCCEEEEEEcCCc---e--EEee-eeeEE-----ecCCeEEEEeC-CCceEEEEEcccCCCCCe
Q psy16425          3 ARMLIEIGEML----MAESTVAWLRVDTQ---T--ILTI-QTHVI-----TKNHRIGVTHS-ETKAWYLHIREVRESDRG   66 (163)
Q Consensus         3 ~~~~~~~~~~~----~~~~~i~W~k~~~~---~--~~~~-~~~~~-----~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G   66 (163)
                      .++.|.|....    .+...|.|++.+..   .  +... .+...     ...+|+.+... ..++++|.|.+++.+|+|
T Consensus        15 ~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G   94 (124)
T 1neu_A           15 SQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNG   94 (124)
T ss_dssp             SCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGGGCE
T ss_pred             CeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEccCChhhCE
Confidence            46788888643    25688999985431   1  2211 11111     12567776543 134568999999999999


Q ss_pred             EEEEEEEeCCC---ceEeEEEEEEcCC
Q psy16425         67 WYMCQVNTDPM---KSQVGYLEVVVPP   90 (163)
Q Consensus        67 ~Y~C~~~~~~~---~~~~~~l~v~~~p   90 (163)
                      .|.|.+.+...   ....+.|.|...|
T Consensus        95 ~Y~C~v~~~~~~~~~~~~v~L~V~~~p  121 (124)
T 1neu_A           95 TFTCDVKNPPDIVGKTSQVTLYVFEKV  121 (124)
T ss_dssp             EEEEEEEC----CCEEEEEEEEEEC--
T ss_pred             EEEEEEEcCCCCcCcEeeEEEEEecCC
Confidence            99999976532   2445566666554

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.98  E-value=5.9e-10  Score=64.70  Aligned_cols=68  Identities=13%  Similarity=0.151  Sum_probs=49.2

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--Ee--ceEEEEcchhhhHhh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DF--PFFKRTKKKKKKKKK  157 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~--~~l~i~~v~~~~~~~  157 (163)
                      |+.+..........+.+|+++.|.|.+.+ |.|.+.|++||..+........  .+  ..|.|.+++.+|.+.
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~   75 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGE   75 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEE
Confidence            44444422222344568999999999866 8889999999999876665543  22  369999999999864

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=98.97  E-value=1.5e-08  Score=66.84  Aligned_cols=116  Identities=15%  Similarity=0.170  Sum_probs=76.0

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-CceE
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-MKSQ   80 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~   80 (163)
                      ++.+.+.|...-..+..+.|...-+....                ..+.....+.|.+++ +|++.|.|.++..+ ....
T Consensus        17 G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~----------------~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~~~~   79 (196)
T 3bn3_B           17 GGSLWLNCSTNCPRPERGGLETSLRRNGT----------------QRGLRWLARQLVDIR-EPETQPVCFFRCARRTLQA   79 (196)
T ss_dssp             TEEEEEEEEECCSSCSEEEEECSSEEEEE----------------EEETTEEEEEEEEEC-SSEECCEEEEEETTEEEEE
T ss_pred             CCeEEEEEeCCCCCCCccEEEEccCCeeE----------------ccccCceEEEEEEEc-cCCCceEEEEECCCCceEE
Confidence            34677778775333336777642111111                001111248899999 88888999986543 4456


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCCe--EEEEECCeEEEec
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKPN--ITWRREGGELIAQ  135 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~--v~W~~~~~~~~~~  135 (163)
                      .+.|.|+.+|........ ...+.+|+.++|.|.+.+ .|...  ++|++++..+...
T Consensus        80 ~v~l~Vy~~P~~v~i~~~-~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~  136 (196)
T 3bn3_B           80 RGLIRTFQRPDRVELMPL-PPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRR  136 (196)
T ss_dssp             ECEEEEEBCCCCCEECCC-CSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEE
T ss_pred             EEEEEEecCCCcCEEccC-CccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeecc
Confidence            678888888876554432 223788999999999987 56554  8999999987544

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.96  E-value=4.4e-09  Score=63.31  Aligned_cols=88  Identities=18%  Similarity=0.214  Sum_probs=53.0

Q ss_pred             ceeEEEeee-eccCCC----EEEEEEcCCce--EEee--eeeEEecCCeEEEEeCCC----ceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGE-MLMAES----TVAWLRVDTQT--ILTI--QTHVITKNHRIGVTHSET----KAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~----~i~W~k~~~~~--~~~~--~~~~~~~~~r~~~~~~~~----~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .++.|.|.. .+.+.+    .|.|++.+...  ....  ....+...+|+.+.....    ++++|.|.+++.+|+|.|.
T Consensus        16 ~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   95 (118)
T 3udw_C           16 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYT   95 (118)
T ss_dssp             SCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChHHCeEEE
Confidence            467888887 344433    49999953221  1111  111122256666654321    2679999999999999999


Q ss_pred             EEEEeC--CCceEeEEEEEEcCC
Q psy16425         70 CQVNTD--PMKSQVGYLEVVVPP   90 (163)
Q Consensus        70 C~~~~~--~~~~~~~~l~v~~~p   90 (163)
                      |.+.+.  +.....+.|.|.++|
T Consensus        96 C~v~~~~~~~~~~~~~L~V~~~P  118 (118)
T 3udw_C           96 CLFVTFPQGSRSVDIWLRVLAKP  118 (118)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC--
T ss_pred             EEEEECCCCCccceEEEEEEeCC
Confidence            999663  234455667776654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.96  E-value=2e-09  Score=70.11  Aligned_cols=75  Identities=27%  Similarity=0.415  Sum_probs=53.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--eE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--SQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~~   80 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+        ....++.....+    .|.|.+++.+|+|.|+|.+.|....  +.
T Consensus       116 ~~~~l~C~~~g~p~~~v~W~~-~~~~~--------~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~  182 (192)
T 2iep_A          116 LKAVLPCTTMGNPKPSVSWIK-GDSAL--------RENSRIAVLESG----SLRIHNVQKEDAGQYRCVAKNSLGTAYSK  182 (192)
T ss_dssp             SCEEECCEEEEESCCEEEEEE-TTEEC--------CCCSSEEECTTS----CEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CcEEEEEEEeccCCceEEEEe-CCEEc--------cCCCcEEEecCC----cEEEecCChhhCEEEEEEEEcCCCcEEEE
Confidence            357888988899999999999 55443        223344444433    7999999999999999999876332  33


Q ss_pred             eEEEEEEcCC
Q psy16425         81 VGYLEVVVPP   90 (163)
Q Consensus        81 ~~~l~v~~~p   90 (163)
                      .+.|.|.++|
T Consensus       183 ~~~l~V~~pp  192 (192)
T 2iep_A          183 LVKLEVEVFA  192 (192)
T ss_dssp             CEEEEEEC--
T ss_pred             EEEEEEEeCC
Confidence            5677777654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.96  E-value=3.4e-09  Score=70.06  Aligned_cols=81  Identities=26%  Similarity=0.366  Sum_probs=52.8

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--e
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--S   79 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~   79 (163)
                      ..+.|.|.. .+.|.+.+.|++ ++..+.       ....++... .+    .|.|.+++.+|+|.|+|.+.|....  +
T Consensus       127 ~~~~l~C~~~~~~p~~~v~W~~-~~~~l~-------~~~~~~~~~-~~----~L~i~~~~~~d~G~Y~C~a~N~~g~~~s  193 (212)
T 2v9r_A          127 EPAVMECQPPRGHPEPTISWKK-DGSPLD-------DKDERITIR-GG----KLMITYTRKSDAGKYVCVGTNMVGERES  193 (212)
T ss_dssp             SCEEEECBCCCEESCCEEEEEE-TTEEEC-------TTSTTEEEE-TT----EEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CcEEEEEecCCCCCCCEEEEEE-CCccCC-------CCcceEEcc-CC----eEEEeeCCHhhCeeEEEEEecccCceec
Confidence            357888887 888999999999 555442       112333332 22    8999999999999999999876432  2


Q ss_pred             EeEEEEEEcCCcccccC
Q psy16425         80 QVGYLEVVVPPDILDYP   96 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~   96 (163)
                      ..+.|.|..+|.+...|
T Consensus       194 ~~~~l~V~~~P~~~~~P  210 (212)
T 2v9r_A          194 EVAELTVLERPSFVKAA  210 (212)
T ss_dssp             CCEEEEEEC--------
T ss_pred             ceEEEEEEeCchHhhhc
Confidence            24788888888766543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.95  E-value=6.6e-09  Score=81.15  Aligned_cols=138  Identities=10%  Similarity=0.108  Sum_probs=83.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      +.+.|.|...+.|.+.|.|.+.+.... ...      ..++.+......+..+.+..+...+.|.|.|.......     
T Consensus        92 g~l~v~c~~~g~P~p~i~W~k~g~~~~-~~~------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~-----  159 (731)
T 2v5y_A           92 GLLNVYVKVNNGPLGNPIWNISGDPTR-TWN------RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLG-----  159 (731)
T ss_dssp             EEEEEEEEETTCCCCSEEEEECCCCCS-SCE------EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEES-----
T ss_pred             ceEEEEEecCCCCccceeEEEeCCcCC-cee------EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeee-----
Confidence            478899999999999999999543321 100      01122211112233455655666666666653211000     


Q ss_pred             EEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEE-EE--ECCeEEEecCCc----eEEeceEEEEcchhhhH
Q psy16425         83 YLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNIT-WR--REGGELIAQGNG----QEDFPFFKRTKKKKKKK  155 (163)
Q Consensus        83 ~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~-W~--~~~~~~~~~~~~----~~~~~~l~i~~v~~~~~  155 (163)
                       ..+..+|.+.. +  ....+.+|+++.|.|.+.|.|.|.+. |+  +++..+......    ....+.|+|.++...|.
T Consensus       160 -~~~~~~p~~~~-~--~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~  235 (731)
T 2v5y_A          160 -HPCTRTPHFLR-I--QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDA  235 (731)
T ss_dssp             -SCCSSSCEECC-C--CCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTC
T ss_pred             -ccccccccccc-c--cceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccC
Confidence             01113455442 2  35778899999999999999999988 88  677665433211    12346899999988875


Q ss_pred             h
Q psy16425        156 K  156 (163)
Q Consensus       156 ~  156 (163)
                      +
T Consensus       236 g  236 (731)
T 2v5y_A          236 G  236 (731)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.94  E-value=3.1e-09  Score=64.10  Aligned_cols=89  Identities=20%  Similarity=0.230  Sum_probs=55.2

Q ss_pred             ceeEEEeeeec-cCCCEEEEEEcCCc------eEEeee-e-eEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEML-MAESTVAWLRVDTQ------TILTIQ-T-HVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~~i~W~k~~~~------~~~~~~-~-~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|.... .....+.||+....      .+.... . ......+|+.+... ..++++|.|.+++.+|+|.|.|.+
T Consensus        13 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v   92 (116)
T 2or8_A           13 HPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRV   92 (116)
T ss_dssp             SCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEE
T ss_pred             CcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccCEEEEEEE
Confidence            46788888654 34567999996411      111111 1 11234567765432 235678999999999999999999


Q ss_pred             EeCCCc-eEeEEEEEEcCCc
Q psy16425         73 NTDPMK-SQVGYLEVVVPPD   91 (163)
Q Consensus        73 ~~~~~~-~~~~~l~v~~~p~   91 (163)
                      .+.+.. .....+.+.+.|.
T Consensus        93 ~~~~~~~~~~~~~~l~V~p~  112 (116)
T 2or8_A           93 EIPGWFNDQKVTFSLQVKPE  112 (116)
T ss_dssp             CCSSTTCCEEEEEEEEEECS
T ss_pred             EcCCcccccEEEEEEEECCc
Confidence            665422 2355566665553

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=7.1e-10  Score=64.76  Aligned_cols=54  Identities=15%  Similarity=0.300  Sum_probs=42.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+..        .          .+..|.|.+++.+|+|.|+|.+.+.
T Consensus        26 ~~v~l~C~~~g~p~~~v~W~k-~~~~~~~--------~----------~~~~L~i~~v~~~d~G~Y~C~a~n~   79 (96)
T 2ens_A           26 GTVTLTCEVPAQPSPQIHWMK-DGVPLPL--------P----------PSPVLILPEIGPQDQGTYSCVATHS   79 (96)
T ss_dssp             CEEEEECCCSSCSSCCCCCEE-SSSBCSS--------C----------CCSEEEEESCCTTTCEEEECEECCS
T ss_pred             CeEEEEEEEccCCCCEEEEEE-CCEECcC--------C----------CCCEEEECCCCcccCEEEEEEEEeC
Confidence            468899999899999999999 5544311        0          1128999999999999999999774

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.94  E-value=8.2e-09  Score=66.97  Aligned_cols=73  Identities=22%  Similarity=0.386  Sum_probs=51.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+.        ...++.....   +..|.|.+++.+|+|.|+|.+.|. +.....
T Consensus       114 ~~v~l~C~~~g~p~~~v~W~~-~g~~~~--------~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  181 (189)
T 2v5t_A          114 EEMTFSCRASGSPEPAISWFR-NGKLIE--------ENEKYILKGS---NTELTVRNIINSDGGPYVCRATNKAGEDEKQ  181 (189)
T ss_dssp             CCEEEECEEEEESCCEEEEEE-TTEECC--------CSSSEEEETT---TTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEccCCCCeEEEEE-CCEECc--------CCCcEEEecC---CCEEEEcCCChhhCeeEEEEEEeCCCceeEE
Confidence            357888998889999999999 555442        2233333322   227999999999999999999776 344445


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus       182 ~~l~V~  187 (189)
T 2v5t_A          182 AFLQVF  187 (189)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555554

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.94  E-value=5.3e-08  Score=63.85  Aligned_cols=79  Identities=14%  Similarity=0.228  Sum_probs=60.9

Q ss_pred             EEEEcccCCCCCeEEEEEEEeCC-CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCCe--EEEEECC
Q psy16425         54 YLHIREVRESDRGWYMCQVNTDP-MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKPN--ITWRREG  129 (163)
Q Consensus        54 ~L~i~~v~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~--v~W~~~~  129 (163)
                      .|.|.+|+  |+|.|.|.+...+ .....+.+.|+.+|........ ...+.+|+.++|.|.+.+ .|...  +.|++++
T Consensus        53 ~l~l~~vs--~~g~~~C~~~c~~~~~~~~~~itVy~~P~~v~i~~~-p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~  129 (192)
T 1zxq_A           53 HYLVSNIS--HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ-PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGN  129 (192)
T ss_dssp             EEEEEEEC--SCEEEEEEEEETTEEEEEEEEEEECBCCCCCEEEEE-SSEECTTSEEEEEEEECSCBCGGGEEEEEEETT
T ss_pred             EEEEeccc--cCCeeEEEEECCCcceEEEEEEEEEeCCCCceEccC-CccccCCCcEEEEEEeCCeECCCCcEEEEEcCC
Confidence            69999998  7899999996653 4456778899988876554321 235788999999999985 77765  8999999


Q ss_pred             eEEEec
Q psy16425        130 GELIAQ  135 (163)
Q Consensus       130 ~~~~~~  135 (163)
                      ..+...
T Consensus       130 ~~l~~~  135 (192)
T 1zxq_A          130 ETLHYE  135 (192)
T ss_dssp             EEEEEE
T ss_pred             EEeeec
Confidence            887544

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=98.93  E-value=1.6e-08  Score=67.40  Aligned_cols=116  Identities=14%  Similarity=0.100  Sum_probs=70.2

Q ss_pred             ceeEEEeeeec-cCCCEEEEEEcCC-c---eEEeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeC-
Q psy16425          3 ARMLIEIGEML-MAESTVAWLRVDT-Q---TILTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTD-   75 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~~i~W~k~~~-~---~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~-   75 (163)
                      .++.|.|...+ .....+.||+... .   .+...... ....+|+.+..+ ..++++|.|.+++.+|+|.|.|.+.+. 
T Consensus        15 ~~v~L~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~-~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~   93 (206)
T 1kgc_D           15 EPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTS-NVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAG   93 (206)
T ss_dssp             SCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSS-SEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCCCS
T ss_pred             CCEEEEEEEcCCCCCccEEEEEECCCCCcEEEEEECCC-CccCCCEEEEEcCCCCEEEEEECCCCcccCccEEEEEeccc
Confidence            46888888755 3445899998642 1   11111110 112678887754 346789999999999999999998542 


Q ss_pred             ------CCceEeEEEEEEcCCcccccCCCCcEEEe--CCCcEEEEeEecc-CCCCeE
Q psy16425         76 ------PMKSQVGYLEVVVPPDILDYPTSTDMVIR--EGSNVTLKCAASG-SPKPNI  123 (163)
Q Consensus        76 ------~~~~~~~~l~v~~~p~~~~~~~~~~~~~~--~g~~~~l~C~~~~-~p~p~v  123 (163)
                            ........|.|...+... .   +...+.  ..+.+.|.|.+.+ +|.|.+
T Consensus        94 ~~~~~~~~~g~gt~L~V~~~~~~~-~---P~V~~~~~~~~~v~L~C~~~g~~P~~~V  146 (206)
T 1kgc_D           94 GTSYGKLTFGQGTILTVHPNIQNP-D---PAVYQLRDSKSSDKSVCLFTDFDSQTNV  146 (206)
T ss_dssp             TTCCCCCCCCCCEEEEEECCCSSC-C---CEEEECCCCTTCCCEEEEEESCCTTCCC
T ss_pred             CCCcccceECCCEEEEEeCCCCCC-C---CeEEeecCCCCCeEEEEEeeceeccccc
Confidence                  112233467776432100 0   111111  1247899999987 688866

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.93  E-value=8.7e-09  Score=61.25  Aligned_cols=80  Identities=15%  Similarity=0.229  Sum_probs=46.8

Q ss_pred             ceeEEEeeee--ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeC--CCceEEEEEcccCCCCCeEEEEEEEeCCCc
Q psy16425          3 ARMLIEIGEM--LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHS--ETKAWYLHIREVRESDRGWYMCQVNTDPMK   78 (163)
Q Consensus         3 ~~~~~~~~~~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   78 (163)
                      ..+.|.|...  +.+.+.+.|++ ++..+........   .++.....  .....+|.|.+++.+|+|.|+|.+.+....
T Consensus        26 ~~v~L~C~~~~~~~~~~~i~W~k-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  101 (112)
T 3so5_A           26 SDVSFTCSAASSSDSPMTFAWXX-DNEALQDAEMENY---AHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGS  101 (112)
T ss_dssp             CCEEEEEEEEESCCCCCEEEEEE-TTEECTTCEEEEE---EETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CCEEEEEEEecCCCCCEEEEEcc-CCcccccccccce---eeeeccCCCccccceEEEEeccccccCCeEEEEEEeCCCc
Confidence            4677888877  45568999999 5544321110000   00000000  001348999999999999999999776332


Q ss_pred             --eEeEEEEE
Q psy16425         79 --SQVGYLEV   86 (163)
Q Consensus        79 --~~~~~l~v   86 (163)
                        +..+.|.|
T Consensus       102 ~~s~~~~l~V  111 (112)
T 3so5_A          102 SYSVXAXLTI  111 (112)
T ss_dssp             EECCCEEEEE
T ss_pred             EEEeEEEEEe
Confidence              34445544

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.92  E-value=3.6e-08  Score=64.25  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=54.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEc-CCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEEEeC-CCce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRV-DTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQVNTD-PMKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~-~~~~   79 (163)
                      ..+.|.|...+.|.+.+.|++. ++..+..     .....++...... ....|.|.+++ .+|+|.|+|.+.|. +...
T Consensus       108 ~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~-----~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~  181 (190)
T 2wv3_A          108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEI-----SNSSGRFFIINKE-NYTELNIVNLQITEDPGEYECNATNSIGSAS  181 (190)
T ss_dssp             SCEEEEEEEECSSCCEEEEEEEETTEEEEC-----CCTTSCEEEEECS-SEEEEEECSCCTTTSCEEEEEEEECSSCEEE
T ss_pred             CcEEEEEEeCccCCCceEEEEcCCCceeee-----ecCCCeEEEecCC-CeeEEEEEeccccCCCEEEEEEEEecCCcce
Confidence            3578889999999999999995 2333211     0234556555433 34489999999 69999999999776 4444


Q ss_pred             EeEEEEEE
Q psy16425         80 QVGYLEVV   87 (163)
Q Consensus        80 ~~~~l~v~   87 (163)
                      ..+.|.|.
T Consensus       182 ~~~~l~V~  189 (190)
T 2wv3_A          182 VSTVLRVR  189 (190)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            55556554

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.92  E-value=6.1e-09  Score=62.25  Aligned_cols=72  Identities=13%  Similarity=0.195  Sum_probs=48.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEeeee-eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILTIQT-HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~~~~-~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.+.+.|.||+.. +..   +..... ......+|+.... ...+++|.|.+++++|+|.|.|.+.+.
T Consensus        19 ~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           19 DRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSG-SGTDFTFTISSLQPEDIATYYCQQYDN   95 (109)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec-cCCEEEEEECCCChhhCEEEEEEEeeC
Confidence            46889999887778899999964 221   111111 1011246777654 235678999999999999999999553

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=98.92  E-value=2.8e-08  Score=66.43  Aligned_cols=117  Identities=11%  Similarity=0.117  Sum_probs=69.8

Q ss_pred             ceeEEEeeeeccCCC-EEEEEEcC-Cce---EEee-eeeE-EecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAES-TVAWLRVD-TQT---ILTI-QTHV-ITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~-~i~W~k~~-~~~---~~~~-~~~~-~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...+.... .+.||+.. +..   +... .... ....+|+.+..+ ..++++|.|.+++.+|+|.|.|.+.+
T Consensus        19 ~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (211)
T 2ak4_D           19 EDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSG   98 (211)
T ss_dssp             CCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEEEecCCcCceeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECccccccCceEEEEEEc
Confidence            467888887654444 89999864 221   1111 1110 023567877643 34678999999999999999999964


Q ss_pred             CC-----CceEeEEEEEEcCCcccccCCCCcEEE--eCCCcEEEEeEecc-CCCCeE
Q psy16425         75 DP-----MKSQVGYLEVVVPPDILDYPTSTDMVI--REGSNVTLKCAASG-SPKPNI  123 (163)
Q Consensus        75 ~~-----~~~~~~~l~v~~~p~~~~~~~~~~~~~--~~g~~~~l~C~~~~-~p~p~v  123 (163)
                      ..     .......|.|...+... .|   ...+  ...+.+.|.|.+.+ +|.|.+
T Consensus        99 ~~~~~~~~~g~gt~L~V~~~~~~~-~P---~V~~~~~~~~~vtL~Cl~~gf~P~~~v  151 (211)
T 2ak4_D           99 FYNTDKLIFGTGTRLQVFPNIQNP-DP---AVYQLRDSKSSDKSVCLFTDFDSQTNV  151 (211)
T ss_dssp             SBTTSCCEECCCEEEEEECCCSSC-CC---EEEEEBCCSSSCCEEEEEESCCTTCCC
T ss_pred             CCCcceeeECCCEEEEEeCcCCCC-CC---EEEEccCCCCceEEEEEeeeecCCccc
Confidence            21     11233467666432100 01   1111  12347899999987 787766

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.92  E-value=1.9e-08  Score=67.22  Aligned_cols=119  Identities=18%  Similarity=0.182  Sum_probs=69.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cc---eEEe-eeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQ---TILT-IQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~---~~~~-~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|...+.....+.||+.. +.   .+.. .........+|+....+ ..+.++|.|.+++.+|+|.|.|.+.+..
T Consensus        19 ~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~   98 (210)
T 2eys_A           19 KNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRG   98 (210)
T ss_dssp             CCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEESCS
T ss_pred             CCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEEccC
Confidence            46888888776666789999964 21   1111 11011123578887643 3467899999999999999999996521


Q ss_pred             ----C--ceEeEEEEEEcCCcccccCCCCcEEEe--CCCcEEEEeEeccC-CCCeEEE
Q psy16425         77 ----M--KSQVGYLEVVVPPDILDYPTSTDMVIR--EGSNVTLKCAASGS-PKPNITW  125 (163)
Q Consensus        77 ----~--~~~~~~l~v~~~p~~~~~~~~~~~~~~--~g~~~~l~C~~~~~-p~p~v~W  125 (163)
                          .  ......|.|...+.. ..|   ...+.  ....+.|.|.+.+. |.+.+.+
T Consensus        99 ~~~~~~~fg~gt~L~V~~~~~~-~~P---~V~~~~~~~~~~tl~Cl~~gf~P~~~v~~  152 (210)
T 2eys_A           99 STLGRLYFGRGTQLTVWPDIQN-PDP---AVYQLRDSKSSDKSVCLFTDFDSQTNVSQ  152 (210)
T ss_dssp             STTCCEEECCCEEEEEECCCSS-CCC---EEEEECCCSSSSCEEEEEESCCTTCCCCC
T ss_pred             CCcccceECCCEEEEEECCCCC-CCC---eEEecCCCCCCceEEEEcccccCCcEecc
Confidence                1  112345666542110 001   11111  12367899999885 4444433

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.91  E-value=6.4e-09  Score=63.37  Aligned_cols=72  Identities=18%  Similarity=0.193  Sum_probs=49.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.+.+.|.||+.. +..   +... ........+|+.... ..++++|.|.+++.+|+|.|.|.+.+.
T Consensus        17 ~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (120)
T 1mqk_L           17 ETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG-SGTQFSLKINSLLPEDFGSYYCQHHYG   93 (120)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEec-cCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            46889999887778899999964 221   1111 111011246777654 235678999999999999999999654

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.91  E-value=4.5e-09  Score=63.87  Aligned_cols=86  Identities=21%  Similarity=0.290  Sum_probs=53.7

Q ss_pred             ceeEEEeeeeccCC----CEEEEEEcCC------ceEEe-eeeeE-----EecCCeEEEEeC--CCceEEEEEcccCCCC
Q psy16425          3 ARMLIEIGEMLMAE----STVAWLRVDT------QTILT-IQTHV-----ITKNHRIGVTHS--ETKAWYLHIREVRESD   64 (163)
Q Consensus         3 ~~~~~~~~~~~~~~----~~i~W~k~~~------~~~~~-~~~~~-----~~~~~r~~~~~~--~~~~~~L~i~~v~~~d   64 (163)
                      ..+.|.|...+.+.    +.|.|++.+.      ..+.. .....     ....+|+.+...  ..++++|.|.+++.+|
T Consensus        21 ~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D  100 (126)
T 1eaj_A           21 ETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSD  100 (126)
T ss_dssp             SCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCGGG
T ss_pred             CCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEEECcCChHH
Confidence            46788888766554    4599999642      22221 11111     123467776654  2345689999999999


Q ss_pred             CeEEEEEEEeCCC-ceEeEEEEEEc
Q psy16425         65 RGWYMCQVNTDPM-KSQVGYLEVVV   88 (163)
Q Consensus        65 ~G~Y~C~~~~~~~-~~~~~~l~v~~   88 (163)
                      +|.|.|.+.+... ....+.|.|.+
T Consensus       101 ~G~Y~C~v~~~~~~~~~~~~L~V~~  125 (126)
T 1eaj_A          101 IGTYQCKVKKAPGVANKKIHLVVLV  125 (126)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CeEEEEEEEcCCccCCcEEEEEEEc
Confidence            9999999976532 23445555543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.90  E-value=1.1e-08  Score=66.67  Aligned_cols=74  Identities=16%  Similarity=0.232  Sum_probs=51.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+.        ...++.....+ ...+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus       119 ~~~~l~C~~~g~p~~~v~W~~-~~~~~~--------~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  188 (194)
T 2a38_A          119 SQVRLQVRVTGIPTPVVKFYR-DGAEIQ--------SSLDFQISQEG-DLYSLLIAEAYPEDSGTYSVNATNSVGRATST  188 (194)
T ss_dssp             EEEEEEEEEEEESCCEEEEEE-TTEECC--------CSSSEEEEEET-TEEEEEEEEECGGGCEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEEEEEecCCeEEEEE-CCEECC--------CCCcEEEEEcC-CEEEEEECCCChhcCeEEEEEEEeCCCceEEE
Confidence            357888988899999999999 555442        23344443332 2347999999999999999999776 333344


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus       189 ~~l~V  193 (194)
T 2a38_A          189 AELLV  193 (194)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.90  E-value=2.9e-09  Score=64.05  Aligned_cols=66  Identities=17%  Similarity=0.291  Sum_probs=52.1

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEE----eceEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQED----FPFFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~----~~~l~i~~v~~~~~~  156 (163)
                      +|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+....    ...|.|.+++.+|.+
T Consensus         7 pp~i~~~~--~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   76 (114)
T 2cqv_A            7 GPQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCG   76 (114)
T ss_dssp             CCEESCCC--CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCE
T ss_pred             CCEEEeCC--CCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCE
Confidence            45555433  3677899999999999999999999999999887655444432    568999999999876

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=98.90  E-value=3.4e-08  Score=65.46  Aligned_cols=118  Identities=15%  Similarity=0.149  Sum_probs=66.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c---eE-EeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeC-
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q---TI-LTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTD-   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~---~~-~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~-   75 (163)
                      ..+.|.|.........+.||+... .   .+ +...... ...+|+....+ ..+.++|.|.+++.+|+|.|.|.+... 
T Consensus        15 ~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~-~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~   93 (200)
T 2nw2_A           15 AIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGL-EEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASG   93 (200)
T ss_dssp             CCEEEEEECCCSSCCCEEEEEECTTSCCEEEEEECSSEE-EEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC---
T ss_pred             CCEEEEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCCc-ccCCceEEEecCCCCEEEEEECccCcccCCcEEEEEEcCC
Confidence            468888887666667899998642 1   11 1111111 12578877643 346789999999999999999998541 


Q ss_pred             --C--CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCCeE
Q psy16425         76 --P--MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKPNI  123 (163)
Q Consensus        76 --~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~v  123 (163)
                        .  .......|.|...+.. ..|. ..........+.|.|.+.+. |.+.+
T Consensus        94 ~~~~~~fg~gt~L~V~~~~~~-~~P~-V~~~~~~~~~~tl~Cl~~gf~P~~~v  144 (200)
T 2nw2_A           94 GSYIPTFGRGTSLIVHPYIQN-PDPA-VYQLRDSKSSDKSVCLFTDFDSQTNV  144 (200)
T ss_dssp             CCCCCEECCCEEEEEECCCSS-CCCE-EEEEEECC--CCEEEEEESCCTTCCC
T ss_pred             cceeeeeCCCEEEEEecCccc-CCCe-EEEcCCCCCCceEEEEeecccCCcEe
Confidence              1  1113345666542110 0110 01111122378899999885 44444

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.90  E-value=1.3e-08  Score=66.58  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=52.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcc-cCCCCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIRE-VRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+        ....++...... ....|.|.+ ++.+|+|.|+|.+.|. +....
T Consensus       120 ~~~~l~C~~~g~p~p~i~W~~-~~~~~--------~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~  189 (197)
T 2j8h_A          120 EVVSIKIPFSGKPDPVITWQK-GQDLI--------DNNGHYQVIVTR-SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK  189 (197)
T ss_dssp             CCCEEEEEEEEESCCEEEEEE-SSCEE--------CSSSSCEEEECS-SEEEEECTTCCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CEEEEEEEEEecCCCcEEEEE-CCEEe--------ecCCCEEEEEcC-CceEEEEeCCCCcccCEeEEEEEEeCCCcEeE
Confidence            357888998999999999999 55554        223444443332 345899999 9999999999999776 33344


Q ss_pred             eEEEEE
Q psy16425         81 VGYLEV   86 (163)
Q Consensus        81 ~~~l~v   86 (163)
                      .+.|.|
T Consensus       190 ~~~l~V  195 (197)
T 2j8h_A          190 TVELDV  195 (197)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            445544

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.89  E-value=1.6e-09  Score=64.47  Aligned_cols=72  Identities=19%  Similarity=0.343  Sum_probs=48.5

Q ss_pred             EEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--EeceEEEEcchhhhHh
Q psy16425         83 YLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        83 ~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~  156 (163)
                      .+.+..+|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+........  .+..|.|.+++.+|.+
T Consensus         4 ~v~~~~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   77 (108)
T 3kvq_A            4 TVLERVAPTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEG   77 (108)
T ss_dssp             -------CCCBSCC--CCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCE
T ss_pred             eECccCCCceecCC--CCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCE
Confidence            45556677776644  467889999999999999999999999999988755544332  4468999999999875

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.89  E-value=2.9e-08  Score=65.48  Aligned_cols=77  Identities=12%  Similarity=0.108  Sum_probs=51.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.+.|...+.|.|.|.|++ ++..+.....  ....+....      ...|.|.++..+|+|.|+|.+.|. +.....
T Consensus       134 ~~~~~~c~~~g~p~p~i~W~~-~~~~~~~~~~--~~~~~~~~~------~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~  204 (218)
T 4frw_A          134 LTLAASCTAEGSPAPSVTWDT-EVKGTTSSRS--FKHSRSAAV------TSEFHLVPSRSMNGQPLTCVVSHPGLLQDQR  204 (218)
T ss_dssp             SEEEEEEEEEEBSCCEEEEEE-SSCCEEEEEE--EECSSSEEE------EEEEEECCCGGGTTCEEEEEEECTTCSSCEE
T ss_pred             cccceeeeccCCcCceEEEEE-CCcccccCce--EecCCcEEE------EEEEEEeeCCHHhCeEEEEEEEeCCCCeEEE
Confidence            357888999999999999999 4544432221  111121111      237999999999999999999876 444555


Q ss_pred             EEEEEEc
Q psy16425         82 GYLEVVV   88 (163)
Q Consensus        82 ~~l~v~~   88 (163)
                      +.+.|.+
T Consensus       205 ~t~~v~V  211 (218)
T 4frw_A          205 ITHILHV  211 (218)
T ss_dssp             EEEECCE
T ss_pred             EEEEEEE
Confidence            5555443

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.88  E-value=2.5e-08  Score=60.94  Aligned_cols=86  Identities=20%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             cceeEEEeeeeccCC---CEEEEEEcCCc----eEEee-eee----EEecCCeEEEEeCC--CceEEEEEcccCCCCCeE
Q psy16425          2 AARMLIEIGEMLMAE---STVAWLRVDTQ----TILTI-QTH----VITKNHRIGVTHSE--TKAWYLHIREVRESDRGW   67 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~---~~i~W~k~~~~----~~~~~-~~~----~~~~~~r~~~~~~~--~~~~~L~i~~v~~~d~G~   67 (163)
                      ..++.|.|...+.+.   ..|.|+|.+..    .+... ...    .....+|+.+....  .++++|.|.+++.+|+|.
T Consensus        15 G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~DsG~   94 (123)
T 4gjt_B           15 GQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGE   94 (123)
T ss_dssp             TSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESCCSSSCSE
T ss_pred             CCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCCChHHCEE
Confidence            357889997655443   45889995321    11111 000    01224566654433  356789999999999999


Q ss_pred             EEEEEEeCCCc--eEeEEEEEE
Q psy16425         68 YMCQVNTDPMK--SQVGYLEVV   87 (163)
Q Consensus        68 Y~C~~~~~~~~--~~~~~l~v~   87 (163)
                      |.|.+.+.+..  ...+.|.|.
T Consensus        95 Y~C~v~t~~~g~~~~~~~L~Vl  116 (123)
T 4gjt_B           95 YECRVSTFPAGSFQARLRLRVL  116 (123)
T ss_dssp             EEEEEEESSSCEEEEEEEEEC-
T ss_pred             EEEEEEECCCCeEEeEEEEEEE
Confidence            99998665333  334445443

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.88  E-value=1.3e-08  Score=60.40  Aligned_cols=85  Identities=16%  Similarity=0.207  Sum_probs=52.3

Q ss_pred             ceeEEEeeeeccCC---CEEEEEEcCCc------eEEeeee--eEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEE
Q psy16425          3 ARMLIEIGEMLMAE---STVAWLRVDTQ------TILTIQT--HVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         3 ~~~~~~~~~~~~~~---~~i~W~k~~~~------~~~~~~~--~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .++.|.|...+.+.   ..|.|++....      .+....+  ......+|+.+... ..++++|.|.+++.+|+|.|.|
T Consensus        10 ~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   89 (109)
T 2oyp_A           10 KNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCC   89 (109)
T ss_dssp             SCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             CCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChhCeEEEE
Confidence            46888888765543   34999995421      1111111  11234566665543 2345789999999999999999


Q ss_pred             EEEeCC-CceEeEEEEEE
Q psy16425         71 QVNTDP-MKSQVGYLEVV   87 (163)
Q Consensus        71 ~~~~~~-~~~~~~~l~v~   87 (163)
                      .+.+.+ .....+.|.|.
T Consensus        90 ~v~~~~~~~~~~~~l~V~  107 (109)
T 2oyp_A           90 RIQFPGLMNDKKLELKLD  107 (109)
T ss_dssp             EECCSSTTCCEEEEEEEE
T ss_pred             EEEcCCcccceEEEEEEE
Confidence            996653 33345555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.87  E-value=9.4e-09  Score=73.46  Aligned_cols=77  Identities=10%  Similarity=0.053  Sum_probs=51.4

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEE--e----CCCceEEEEEcccCCCCCeEEEEEEEeC-C
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVT--H----SETKAWYLHIREVRESDRGWYMCQVNTD-P   76 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~--~----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~   76 (163)
                      .+.+.|...+.|.|.|.|++ ++..+..        .......  .    ....+.+|.|.+++.+|+|.|+|.+.|. +
T Consensus       263 ~v~l~C~~~g~P~p~i~W~~-~g~~l~~--------~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G  333 (347)
T 2ifg_A          263 HWCIPFSVDGQPAPSLRWLF-NGSVLNE--------TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG  333 (347)
T ss_dssp             SEEEEEEEEEESCCEEEEEE-TTEECCC--------CSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             eEEEEEEeeecCCCcEEEEe-CCEECCC--------CcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCC
Confidence            57889999999999999999 5554421        1111111  1    0113458999999999999999999776 3


Q ss_pred             CceEeEEEEEEcC
Q psy16425         77 MKSQVGYLEVVVP   89 (163)
Q Consensus        77 ~~~~~~~l~v~~~   89 (163)
                      .....+.|.|..+
T Consensus       334 ~~~~~~~l~V~~~  346 (347)
T 2ifg_A          334 QASASIMAAFMDN  346 (347)
T ss_dssp             EEEEEEEECSCCC
T ss_pred             ceeeEEEEEecCC
Confidence            3444445554443

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.87  E-value=1.7e-09  Score=61.82  Aligned_cols=57  Identities=19%  Similarity=0.339  Sum_probs=46.6

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--E--eceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--D--FPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~--~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+.+ |.|.+.|+++|.++........  .  ...|.|.+++.+|.+.
T Consensus         5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   65 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGE   65 (84)
T ss_dssp             CEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEE
T ss_pred             EEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEE
Confidence            567889999999999966 8999999999999876665543  2  2479999999999763

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.87  E-value=6e-09  Score=62.34  Aligned_cols=88  Identities=20%  Similarity=0.270  Sum_probs=54.7

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcCC-c-e--EEeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVDT-Q-T--ILTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~~-~-~--~~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|...... ...+.||+... . .  +...........+|+.+... ..+.++|.|.+++.+|+|.|.|.+.+..
T Consensus        12 ~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~   91 (110)
T 2q87_A           12 GSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPW   91 (110)
T ss_dssp             SCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTT
T ss_pred             CcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEEEEEEEecCc
Confidence            4678888865543 36899998542 1 1  11111000013467776643 3457899999999999999999997653


Q ss_pred             -C--ceEeEEEEEEcCC
Q psy16425         77 -M--KSQVGYLEVVVPP   90 (163)
Q Consensus        77 -~--~~~~~~l~v~~~p   90 (163)
                       .  ......+.|.+.|
T Consensus        92 ~g~~~~~~~~v~v~V~p  108 (110)
T 2q87_A           92 LQDFHDPVVEVEVSVFP  108 (110)
T ss_dssp             SCCBCCCSEEEEEEEC-
T ss_pred             cCccCCccEEEEEEEec
Confidence             1  2345566666655

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.87  E-value=1e-08  Score=61.82  Aligned_cols=86  Identities=13%  Similarity=0.063  Sum_probs=53.6

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCC------ceEEeeee--eEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDT------QTILTIQT--HVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~------~~~~~~~~--~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .++.|.|.....  ....+.|++...      ..+....+  ......+|+.+.... .++++|.|.+++.+|+|.|.|.
T Consensus        13 ~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~   92 (115)
T 2or7_A           13 HPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCV   92 (115)
T ss_dssp             SCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEE
T ss_pred             CCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCHHHCEEEEEE
Confidence            468888876543  346899999541      22222211  122345677755322 3567999999999999999999


Q ss_pred             EEeCCCceEeEEEEEEcC
Q psy16425         72 VNTDPMKSQVGYLEVVVP   89 (163)
Q Consensus        72 ~~~~~~~~~~~~l~v~~~   89 (163)
                      +...+... ...+.+.+.
T Consensus        93 v~~~~~~~-~~~v~L~V~  109 (115)
T 2or7_A           93 VEIPGAFH-FVDYMLEVK  109 (115)
T ss_dssp             ECCTTSCE-EEEEEEEEE
T ss_pred             EECCCcee-EEEEEEEEc
Confidence            96544332 445555443

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.87  E-value=1.7e-08  Score=67.05  Aligned_cols=82  Identities=23%  Similarity=0.244  Sum_probs=54.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~   80 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+...     ....++...... ....|.|.+++.+|+|.|+|.+.|...  .+.
T Consensus       124 ~~v~l~C~~~g~p~p~v~W~~-~g~~l~~~-----~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~  196 (212)
T 2yd6_A          124 RTATMLCAASGNPDPEITWFK-DFLPVDTS-----NNNGRIKQLRSE-SIGALQIEQSEESDQGKYECVATNSAGTRYSA  196 (212)
T ss_dssp             SCEEEEEEEECSSCCEEEEEE-TTEEC-----------CCEEEEEET-TEEEEEECSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CCEEEEEEecCCCCCeEEEEE-CCccccCc-----CCCceEEEEecC-CeEEEEEcCCCcccCEEEEEEEECCCCccccc
Confidence            357888999999999999999 55544221     112344433322 245899999999999999999987732  234


Q ss_pred             eEEEEEEcCCc
Q psy16425         81 VGYLEVVVPPD   91 (163)
Q Consensus        81 ~~~l~v~~~p~   91 (163)
                      .+.|.+.+.+.
T Consensus       197 ~a~l~~~~~~~  207 (212)
T 2yd6_A          197 PANLYVRGTKH  207 (212)
T ss_dssp             CEEEEEEC---
T ss_pred             cccEEEEeccc
Confidence            56777776553

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.86  E-value=7.6e-09  Score=63.11  Aligned_cols=86  Identities=17%  Similarity=0.212  Sum_probs=53.9

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeee--eE---EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQT--HV---ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~--~~---~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .++.|.|.. .+.....|.||+.....+.....  ..   ....+|+.+..   .+.+|.|.+++.+|+|.|.|.+.+..
T Consensus        20 ~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~---~~~sL~I~nv~~~DsG~Y~c~v~~~~   96 (121)
T 2edo_A           20 SNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDP---QSGALYISKVQKEDNSTYIMRVLKKT   96 (121)
T ss_dssp             SCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECT---TTCCEEESSCCGGGCSEEEEEEEETT
T ss_pred             CCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeC---CCceEEEeCCCHHHCeEEEEEEEcCC
Confidence            468888876 44456789999965423322111  11   12235655541   23489999999999999999996553


Q ss_pred             C--ceEeEEEEEEcCCc
Q psy16425         77 M--KSQVGYLEVVVPPD   91 (163)
Q Consensus        77 ~--~~~~~~l~v~~~p~   91 (163)
                      .  ....+.|.|..++.
T Consensus        97 ~~~~~~~~~L~V~~~~~  113 (121)
T 2edo_A           97 GNEQEWKIKLQVLDPVP  113 (121)
T ss_dssp             TEEEECCEECEEECCSC
T ss_pred             CcEEEEEEEEEEECCCC
Confidence            2  33455667765443

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.86  E-value=5.2e-09  Score=62.48  Aligned_cols=72  Identities=17%  Similarity=0.235  Sum_probs=48.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c-e--EEeee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q-T--ILTIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~-~--~~~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.+.+.|.||+... . +  +.... .......+|+.... ..++++|.|.+++++|+|.|.|.+.+.
T Consensus        17 ~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (108)
T 1qfw_M           17 ERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSG-SATDFTLTISSVQAEDFADYHCGQTYN   93 (108)
T ss_dssp             CCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCB-CSSEEEEEESSCCTTCCSEEEEEECSS
T ss_pred             CCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEc-CCCEEEEEECCCChhhCEEEEEEEccC
Confidence            468899988777778999999642 1 1  11111 10001245666543 335679999999999999999999653

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.86  E-value=1.1e-08  Score=67.89  Aligned_cols=69  Identities=22%  Similarity=0.382  Sum_probs=49.1

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|.. .+.|.+.+.|++ ++..+............++.....+    .|.|.+++.+|+|.|+|.+.|..
T Consensus       124 ~~v~l~C~~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~N~~  193 (217)
T 2vr9_A          124 ETALLECGPPKGIPEPTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGG----NLLISNVEPIDEGNYKCIAQNLV  193 (217)
T ss_dssp             SCEEECCBCCCEESCCEEEEEE-TTEEECCCCCC---CCCSEEEETTT----EEEESSCCSTTCEEEEEEEEETT
T ss_pred             CeEEEEEECCCCCCCCeEEEEE-CCcCCCcccccccccCCcEEecCCC----cEEEeeCCHHHCeEEEEEEEccc
Confidence            357788887 889999999999 5655532222222234555555444    89999999999999999998763

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.86  E-value=3e-08  Score=66.00  Aligned_cols=86  Identities=14%  Similarity=0.172  Sum_probs=49.7

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcCCceEEeeee-e-EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CC
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVDTQTILTIQT-H-VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~~~~~~~~~~-~-~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~   77 (163)
                      ..+.|.|...+.|  .+.|.|++.+. .+..... . ........+   .......|.|.+++.+|+|.|+|.+.|. +.
T Consensus       121 ~~v~L~C~~~g~p~~~~~i~W~~~g~-~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~  196 (213)
T 2x1w_L          121 EKLVLNCTARTELNVGIDFNWEYPSS-KHQHKKLVNRDLKTQSGSE---MKKFLSTLTIDGVTRSDQGLYTCAASSGLMT  196 (213)
T ss_dssp             CCEEEEEEEEECTTBCCEEEEECSCS-SCCSEEEEEEEECCCSSCS---CEEEEEEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             CCEEEEEEEECCCCCceEEEEEecCC-ccceEEEeccccccccCcc---ceeeeEEEEECCCCcccCEEEEEEEecCCCc
Confidence            4678888887644  46899999543 3211100 0 001000000   0001237999999999999999999776 45


Q ss_pred             ceEeEEEEEEcCCcc
Q psy16425         78 KSQVGYLEVVVPPDI   92 (163)
Q Consensus        78 ~~~~~~l~v~~~p~~   92 (163)
                      ....+.|.|...|.+
T Consensus       197 ~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          197 KKNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEEEEEEEEEC----
T ss_pred             EEEEEEEEEeccccc
Confidence            566677888776654

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.86  E-value=2.2e-09  Score=73.24  Aligned_cols=93  Identities=12%  Similarity=0.121  Sum_probs=43.8

Q ss_pred             cCCCCCeEEEEEEEeCCCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCC-----CCeEEEEECC--eEE
Q psy16425         60 VRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSP-----KPNITWRREG--GEL  132 (163)
Q Consensus        60 v~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~p~v~W~~~~--~~~  132 (163)
                      ++++|+|.|+|.+.  +.......+.+..++.+...+  ....+.+|+++.|.|.+.+.|     .+.+.|++++  ..+
T Consensus        11 v~~~dsg~Y~C~a~--g~~~~~~~~~~~~~~~~~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~   86 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS--GYSFTNYWMNWLRELVMTQSP--LTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP   86 (254)
T ss_dssp             -----------------------------CCCEEEEC--SEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred             ecCCccEEEEEcCc--hhhhhhhhhheeeceeEEeCC--ceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence            78999999999996  222222223333344444433  367889999999999999887     3889999743  221


Q ss_pred             E---------ec---CCceE----EeceEEEEcchhhhHh
Q psy16425        133 I---------AQ---GNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       133 ~---------~~---~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      .         ..   .+...    ....|+|.+++.+|.+
T Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  126 (254)
T 2c1o_A           87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLG  126 (254)
T ss_dssp             EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCE
Confidence            1         00   11111    1237999999999875

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.85  E-value=4.2e-09  Score=61.30  Aligned_cols=57  Identities=14%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+++.|.|.+.+.| |.+.|++++..+....+....++.|.|.+++.+|++
T Consensus        17 ~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G   73 (95)
T 2ckn_A           17 ESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSG   73 (95)
T ss_dssp             CCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSE
T ss_pred             ceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCE
Confidence            367789999999999999987 899999999887666555556788999999999876

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.85  E-value=4.3e-09  Score=69.93  Aligned_cols=73  Identities=8%  Similarity=-0.023  Sum_probs=45.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++.++......     ....|+....++ .-..|.|.+++.+|+|.|+|.+.|.......
T Consensus       122 ~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~-----~~~~r~~~~~~g-~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          122 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPT-----AANGGVMKEKDG-SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             CCEEEEEEEEEESCCEEEECCC-----------------CCEECTTS-CEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             CEEEEEEEcCCCCCCEEEEEECCeeecCcc-----cccceEEEeCCC-CEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            357899999999999999998554432111     123344444333 1124566899999999999999887554443

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.85  E-value=2.1e-08  Score=61.46  Aligned_cols=77  Identities=18%  Similarity=0.284  Sum_probs=49.2

Q ss_pred             ceeEEEeeeeccCCC----EEEEEEcCC----ceEEee---eeeEEe----cCCeEEEEeCC----------CceEEEEE
Q psy16425          3 ARMLIEIGEMLMAES----TVAWLRVDT----QTILTI---QTHVIT----KNHRIGVTHSE----------TKAWYLHI   57 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~----~i~W~k~~~----~~~~~~---~~~~~~----~~~r~~~~~~~----------~~~~~L~i   57 (163)
                      .++.|.|...+.+.+    .|.|++...    ..+...   .+....    ..+|+.+....          ..+++|.|
T Consensus        18 ~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~~~~sL~I   97 (128)
T 3r0n_A           18 GTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLAL   97 (128)
T ss_dssp             SCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBCSBCCEEE
T ss_pred             CCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCCCCeEEEE
Confidence            468888988776654    899999521    111111   011111    23677765553          23679999


Q ss_pred             cccCCCCCeEEEEEEEeCCCce
Q psy16425         58 REVRESDRGWYMCQVNTDPMKS   79 (163)
Q Consensus        58 ~~v~~~d~G~Y~C~~~~~~~~~   79 (163)
                      .+++.+|+|.|+|.+.+.+...
T Consensus        98 ~~v~~~D~G~Y~C~v~~~~~g~  119 (128)
T 3r0n_A           98 HGLTVEDEGNYTCEFATFPKGS  119 (128)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEE
T ss_pred             ccCCchhCeEEEEEEEeCCCCC
Confidence            9999999999999986554333

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.84  E-value=9e-09  Score=61.31  Aligned_cols=72  Identities=13%  Similarity=0.214  Sum_probs=48.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cc-e--EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQ-T--ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~-~--~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.+.+.|.||+.. +. +  +... ........+|+.... ..+.++|.|.+++++|+|.|.|.+.+.
T Consensus        17 ~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (107)
T 1i8k_A           17 EKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG-TGTDFVFTIENTLSEDVGDYYCLQSFN   93 (107)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEc-cCCEEEEEECCCCHHHCEEEEEEEeeC
Confidence            46889998877778899999964 11 1  1111 111011246777654 335678999999999999999999543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.83  E-value=1.9e-09  Score=63.59  Aligned_cols=66  Identities=14%  Similarity=0.162  Sum_probs=50.5

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      +|.+...+  ....+.+|+++.|.|.+.+.|.|.+.|++++..+........    ....|.|.+++.+|.+
T Consensus         8 ~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   77 (103)
T 3qp3_A            8 APRITLRM--RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSG   77 (103)
T ss_dssp             EEEEEECC--CCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCEEEeCC--cceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCE
Confidence            34444433  356788999999999999999999999999988766544332    2246999999999875

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.83  E-value=2.3e-08  Score=64.88  Aligned_cols=69  Identities=10%  Similarity=0.064  Sum_probs=50.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-CceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-MKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~~   81 (163)
                      ..+.|.|...+.|.+.+.|++. +..+.               ...    ..|.|.+++.+|+|.|+|.+.+.. .....
T Consensus       113 ~~~~l~C~~~~~p~~~v~W~~~-~~~~~---------------~~~----~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~  172 (184)
T 2ny1_B          113 QSLTLTLESPPGSSPSVQCRSP-RGKNI---------------QGG----KTLSVSQLELQDSGTWTCTVLQNQKKVEFK  172 (184)
T ss_dssp             CCEEEEEECCTTCCCEEEEECT-TSCEE---------------EES----SEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCEEEEEEcCCCCCCEEEEEeC-CCccc---------------cCc----eEEEEecCCcCCCeEEEEEEEECCceEEEE
Confidence            3678889988889999999994 33321               111    289999999999999999997653 34455


Q ss_pred             EEEEEEcCCc
Q psy16425         82 GYLEVVVPPD   91 (163)
Q Consensus        82 ~~l~v~~~p~   91 (163)
                      +.|.|...|.
T Consensus       173 ~~l~V~~~p~  182 (184)
T 2ny1_B          173 IDIVVLAFQK  182 (184)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEecCC
Confidence            6666666553

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.82  E-value=3.8e-08  Score=59.09  Aligned_cols=71  Identities=18%  Similarity=0.393  Sum_probs=47.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ceE---EeeeeeEEecCCeEEEEeC--CCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QTI---LTIQTHVITKNHRIGVTHS--ETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~---~~~~~~~~~~~~r~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.+ +.|.||+... ...   ...... ....+|+.+...  ...+++|.|.+++++|+|.|.|.+.+.
T Consensus        17 ~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~-~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~   93 (113)
T 1h5b_A           17 TDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASG-TKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEAS   93 (113)
T ss_dssp             CCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSS-EEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCC-CccCCceEEEEccCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence            4678888877654 6899998642 211   111100 123466766544  346789999999999999999999764

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.82  E-value=9.1e-09  Score=62.59  Aligned_cols=72  Identities=13%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cc-e--EEeee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQ-T--ILTIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~-~--~~~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.+.+.|.||+.. +. +  +.... .......+|+.... ..++++|.|.+++++|+|.|.|.+.+.
T Consensus        19 ~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (119)
T 2e27_L           19 GKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSG-SGRDYSFSISNLEPEDAATYYCLQYDN   95 (119)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEECGG
T ss_pred             CCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc-cCCEEEEEECCCChHHCEEEEEEEccC
Confidence            46888998887778899999964 11 1  11111 11111246777654 235678999999999999999999653

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.82  E-value=1.2e-08  Score=70.27  Aligned_cols=113  Identities=13%  Similarity=0.000  Sum_probs=47.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC------
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP------   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~------   76 (163)
                      ..+.|.|...+. .+.+.|+| ++..+.....       + .....+.....|.|.+++  |+|.|+|.+.+..      
T Consensus       122 ~~vtL~C~~~~~-~~~~~w~k-~g~~~~~~~~-------~-~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s  189 (257)
T 1b6u_A          122 ESVTLSCSSRSS-YDMYHLSR-EGEAHERRFS-------A-GPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWS  189 (257)
T ss_dssp             CEEEEEEECSSC-CSEEEEEE-TTSSCEECCB-------C-BCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBC
T ss_pred             CEEEEEEeCCCC-CcEEEEEE-CCcccCcccc-------c-ccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccc
Confidence            367888887765 47899999 4544321100       0 000111123489999998  9999999996531      


Q ss_pred             CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECC
Q psy16425         77 MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG  129 (163)
Q Consensus        77 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~  129 (163)
                      ..+....|.|...|.... +.........|..+.|.|.+ |.+.+.+.|...+
T Consensus       190 ~~S~pl~L~V~g~p~~~~-p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~  240 (257)
T 1b6u_A          190 NSSDPLLVSVTGNPSNSW-PSPTEPSSETGNPRHLHAAA-EQKLISEEDLNLD  240 (257)
T ss_dssp             CCCCCEEECCBCCC---------------------------------------
T ss_pred             cCCCCEEEEEeccCCCCC-CCCcccCccCCCeEEEEEEE-cchHHHHHHhhhh
Confidence            224456677777776552 22222334568889999876 5577789997654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.82  E-value=5.9e-09  Score=68.87  Aligned_cols=73  Identities=12%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      ..+.|.|.. .+.|.+.|.|++.++.....       . .+..    ...+..|.|.+++.+|+|.|+|.+.|. +....
T Consensus       137 ~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~-------~-~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~  204 (214)
T 3jz7_A          137 NDFKLKCEPKEGSLPLQFEWQKLSDSQTMP-------T-PWLA----EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQC  204 (214)
T ss_dssp             CCEEEEEECSBCCSSCEEEEEECSTTCCCC-------G-GGGG----GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CcEEEEecCCCCCCCCEEEEEECCCCCccC-------c-ccee----ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEE
Confidence            357888988 89999999999953322110       0 0000    011228999999999999999999776 33444


Q ss_pred             eEEEEEE
Q psy16425         81 VGYLEVV   87 (163)
Q Consensus        81 ~~~l~v~   87 (163)
                      .+.|.|.
T Consensus       205 ~~~l~V~  211 (214)
T 3jz7_A          205 MLRLDVV  211 (214)
T ss_dssp             EEEECCB
T ss_pred             EEEEEEe
Confidence            4455544

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.82  E-value=1.5e-08  Score=65.98  Aligned_cols=63  Identities=22%  Similarity=0.413  Sum_probs=47.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+..      ....++.....+    +|.|.+++.+|+|.|+|.+.|..
T Consensus       116 ~~~~l~C~~~g~p~~~v~W~~-~~~~~~~------~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~  178 (191)
T 1epf_A          116 EDAVIVCDVVSSLPPTIIWKH-KGRDVIL------KKDVRFIVLSNN----YLQIRGIKKTDEGTYRCEGRILA  178 (191)
T ss_dssp             SCEEECCEEECSSCCEEEEEE-TTEEGGG------GCCTTEEECTTS----CEEETTCCGGGCEEEEEEEEEGG
T ss_pred             CeEEEEEEECCCCCCEEEEEE-CCEEeec------cCCceEEEecCC----eEEECCCChhhCEEEEEEEEEec
Confidence            357888999999999999999 4544311      123445544443    79999999999999999997763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.82  E-value=1.5e-08  Score=74.76  Aligned_cols=79  Identities=18%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.+.|.+ +.|.|.|.|++.++..+...     ....|+.....+    +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus       357 ~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~-----~~~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  426 (440)
T 3zyj_A          357 MAAELKCRA-STSLTSVSWITPNGTVMTHG-----AYKVRIAVLSDG----TLNFTNVTVQDTGMYTCMVSNSVGNTTAS  426 (440)
T ss_dssp             SCCEECCEE-SSTTSEEEEECTTSCEEESS-----SCCSSEEECTTC----CEEESSCCSTTCEEEEEEEECSSCEEEEE
T ss_pred             ceEEEEeec-CCCCCceEEEeCCCceeecc-----CCCceEEEccCC----eEEEccCChhhCEEEEEEEEcCCCcEEEE
Confidence            357778887 56899999999555443211     122455555544    7999999999999999999776 445556


Q ss_pred             EEEEEEcCCc
Q psy16425         82 GYLEVVVPPD   91 (163)
Q Consensus        82 ~~l~v~~~p~   91 (163)
                      +.+.|...|.
T Consensus       427 ~~~~v~~~~~  436 (440)
T 3zyj_A          427 ATLNVTGTHH  436 (440)
T ss_dssp             EEEEEC----
T ss_pred             EEEEEecccc
Confidence            6666665543

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.81  E-value=1.4e-08  Score=66.93  Aligned_cols=76  Identities=17%  Similarity=0.381  Sum_probs=50.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--eE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--SQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~~   80 (163)
                      ..+.|.|...+.| +.|.|++ ++..+        ....++......   .+|.|.+++.+|+|.|+|.+.|....  +.
T Consensus       126 ~~v~l~C~~~~~p-p~i~W~~-~g~~l--------~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~  192 (208)
T 3r4d_A          126 DSVTLTCLSNDIG-ANIQWLF-NSQSL--------QLTERMTLSQNN---SILRIDPIKREDAGEYQCEISNPVSVRRSN  192 (208)
T ss_dssp             CCEEEEEECSCTT-CEEEEEE-TTEEC--------CCCSSEEEETTT---TEEEESSCCGGGCEEEEEEEECTTCCEECC
T ss_pred             CCEEEEEECCCCC-CceEEEE-CCEeC--------CCCCCeEEcCCC---CEEEEeccCHHhCeEEEEEEecCCCcccCC
Confidence            3577888888766 7999999 55544        223445444332   28999999999999999999877433  34


Q ss_pred             eEEEEEEcCCc
Q psy16425         81 VGYLEVVVPPD   91 (163)
Q Consensus        81 ~~~l~v~~~p~   91 (163)
                      .+.|.+..+|.
T Consensus       193 ~~~l~v~~~~~  203 (208)
T 3r4d_A          193 SIKLDIIFDPH  203 (208)
T ss_dssp             CEEECCC----
T ss_pred             ceeeeEEeCCc
Confidence            45555555443

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.81  E-value=7e-08  Score=58.91  Aligned_cols=85  Identities=12%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCC-c---e-EEeeeeeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDT-Q---T-ILTIQTHVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~-~---~-~~~~~~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.....  ....+.||+... .   . +...........+|+.+.. ...+.++|.|.+++++|+|.|.|.+..
T Consensus        26 ~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~v~~  105 (122)
T 1hkf_A           26 QTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYR  105 (122)
T ss_dssp             CCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEc
Confidence            467888876543  236899999631 1   1 1111111123457887753 345788999999999999999999965


Q ss_pred             CC--CceEeEEEEEE
Q psy16425         75 DP--MKSQVGYLEVV   87 (163)
Q Consensus        75 ~~--~~~~~~~l~v~   87 (163)
                      .+  .......|.+.
T Consensus       106 ~~~~~~~~~~~l~L~  120 (122)
T 1hkf_A          106 PSDNSVSKSVRFYLV  120 (122)
T ss_dssp             TTTCCEEEEEEEEEE
T ss_pred             CCCCcccccEEEEEE
Confidence            43  33444445444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.81  E-value=1.1e-08  Score=76.15  Aligned_cols=74  Identities=19%  Similarity=0.261  Sum_probs=49.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.+.|.+.+.|.|.|.|++.+ ..+...     ....|+.....+    +|.|.+++.+|+|.|+|.+.+. +.....
T Consensus       401 ~~v~l~C~~~g~P~p~i~W~~~~-~~~~~~-----~~~~~~~~~~~~----~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  470 (477)
T 2id5_A          401 HTVQFVCRADGDPPPAILWLSPR-KHLVSA-----KSNGRLTVFPDG----TLEVRYAQVQDNGTYLCIAANAGGNDSMP  470 (477)
T ss_dssp             CCEEECCCEEEESCCEEEEECTT-SCBC------------CEECTTS----CEEESSCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEeccccCCCEEEEEECC-cccccc-----CCCceEEeCCCC----EEEEeeCChHHCEEEEEEEEeCCCcEEEE
Confidence            46788899999999999999954 333211     123444444443    7999999999999999999776 333444


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.+.|
T Consensus       471 ~~l~V  475 (477)
T 2id5_A          471 AHLHV  475 (477)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            45544

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.81  E-value=6.8e-09  Score=60.66  Aligned_cols=57  Identities=12%  Similarity=0.246  Sum_probs=46.8

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-----EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++..+........     ....|.|.+++.+|.+
T Consensus        14 ~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   75 (99)
T 1g1c_A           14 SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSA   75 (99)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCE
T ss_pred             ceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCE
Confidence            56788999999999999999999999999998765544332     2237999999999876

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.80  E-value=1.4e-08  Score=63.76  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=48.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cc---eEEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQ---TILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~---~~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|.....+...+.||+.. +.   .+... ........+|+.... ...+++|.|.+++.+|+|.|.|.+.+.
T Consensus        16 ~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~-~~~~~sL~I~~l~~~DsG~Y~C~~~~~   92 (143)
T 3u6r_L           16 ERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSG-SGTDFTLTISNLEPEDFAVYYCQQRSD   92 (143)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             CCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEc-cCCEEEEEEccCcccCCEEEEEEEecC
Confidence            46788888776667789999963 11   11111 111112346777663 346789999999999999999999543

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.80  E-value=2.7e-09  Score=61.85  Aligned_cols=67  Identities=19%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECC--eEEEecCCceE--EeceEEEEcchhhhHhh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG--GELIAQGNGQE--DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~--~~~~~~~~~~~--~~~~l~i~~v~~~~~~~  157 (163)
                      +|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++++  ..+........  ....|.|.++..+|++.
T Consensus         2 ~P~i~~~~--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   72 (93)
T 1wit_A            2 KPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGN   72 (93)
T ss_dssp             CCEECCCC--CEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEE
T ss_pred             CCeEEcCC--CceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEE
Confidence            45554322  4677899999999999999999999999999  66533211111  23679999999998763

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.80  E-value=5.3e-09  Score=80.65  Aligned_cols=101  Identities=21%  Similarity=0.199  Sum_probs=49.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-C----
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-M----   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~----   77 (163)
                      ..+.|.|...+ |.+.|.|+++ +..+..      ....++ +...    ..|.|.+++.+|+|.|.|.+.+.+ .    
T Consensus       549 ~~~~L~C~~~s-p~a~v~W~~~-~~~l~~------~~~~~~-~~~~----~~LlI~~v~~~DsG~Y~C~A~e~~~~~~~~  615 (663)
T 1olz_A          549 GTAELKCSQKS-NLARVFWKFQ-NGVLKA------ESPKYG-LMGR----KNLLIFNLSEGDSGVYQCLSEERVKNKTVF  615 (663)
T ss_dssp             SCEEECCCCSC-TTCEEEEEES-SSBCCC------CSSSBC-CTTT----TCEEECSCCGGGCEEEEEEEEEECSSSEEE
T ss_pred             CcEEEEccCCC-CCCcEEEEEC-Ceeccc------cCcceE-EecC----CeEEEEecCcccCeEEEEEEEECccCCCce
Confidence            46788898888 9999999994 443311      111111 1111    269999999999999999997662 1    


Q ss_pred             -ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc
Q psy16425         78 -KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG  117 (163)
Q Consensus        78 -~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~  117 (163)
                       ......|+|.++|.+...|.. .....+|+.+.++|.+..
T Consensus       616 ~~~~~~~l~V~v~P~~~~~p~~-~~~~~~g~~~~~~~~~~~  655 (663)
T 1olz_A          616 QVVAKHVLEVKVVPKPVVAPTL-SVVQTEGSRIATKVLVAS  655 (663)
T ss_dssp             EEEEEEEEEEEC-----------------------------
T ss_pred             EEEEEEEEEEEeCCccCCCCCC-hhhhhcCCceEEEeeccc
Confidence             134567888999988887654 467889999999999854

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.80  E-value=7.4e-09  Score=62.51  Aligned_cols=81  Identities=15%  Similarity=0.165  Sum_probs=46.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceE--EEEEcccCCCCCeEEEEEEEeCCCc--
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAW--YLHIREVRESDRGWYMCQVNTDPMK--   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~~~~~~~~--   78 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+.....   ....+......+ ...  .|.+.+++.+|+|.|+|.+.|....  
T Consensus        25 ~~v~L~C~~~g~P~p~v~W~k-~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~   99 (117)
T 2v9t_A           25 EPATLNCKAEGRPTPTIEWYK-GGERVETDKD---DPRSHRMLLPSG-SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV   99 (117)
T ss_dssp             CCEEECCEEEEESCCEEEEEE-TTEECCCTTT---CSSCSEEECTTS-CEEESSCCCBTTBCSSCEEEEEEEEETTEEEE
T ss_pred             CcEEEEEECCccCCCeEEEEE-CCEeccccCC---CCcceeEEecCC-cEEEEEEEeCCCCcCcCEEEEEEEEeCccceE
Confidence            357889999999999999999 5544321100   000111111221 111  1223367899999999999877332  


Q ss_pred             eEeEEEEEEc
Q psy16425         79 SQVGYLEVVV   88 (163)
Q Consensus        79 ~~~~~l~v~~   88 (163)
                      +..+.+.+..
T Consensus       100 s~~~~l~~~~  109 (117)
T 2v9t_A          100 SHDASLEVAA  109 (117)
T ss_dssp             CCCEEEEEC-
T ss_pred             eeeEEEEhhh
Confidence            3344555544

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.79  E-value=2.3e-08  Score=65.36  Aligned_cols=71  Identities=14%  Similarity=0.212  Sum_probs=48.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.        ...  .....   +..|.|.+++.+|+|.|+|.+.|. +.....
T Consensus       129 ~~~~l~C~~~g~p~p~v~W~~-~~~~~~--------~~~--~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  194 (201)
T 3s97_C          129 QNVTLECFALGNPVPDIRWRK-VLEPMP--------STA--EISTS---GAVLKIFNIQLEDEGIYECEAENIRGKDKHQ  194 (201)
T ss_dssp             CCEEEEEEEEEESCCEEEEEE-TTBCCC--------TTC--EEETT---TTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEccCCCCCceEEEe-CCCcCC--------Cce--eecCC---CCEEEEccCChhhCEEEEEEEEecCCceeee
Confidence            357888988899999999999 444331        111  11111   128999999999999999999776 344445


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus       195 ~~l~V~  200 (201)
T 3s97_C          195 ARIYVQ  200 (201)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555553

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.79  E-value=2.5e-08  Score=66.17  Aligned_cols=75  Identities=20%  Similarity=0.353  Sum_probs=52.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCce-E-
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKS-Q-   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~-   80 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.       ....++... .+    .|.|.+++.+|+|.|+|.+.|..... . 
T Consensus       126 ~~v~l~C~~~g~p~p~i~W~~-~~~~~~-------~~~~~~~~~-~~----~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~  192 (212)
T 2yd1_A          126 HTVLMTCKAIGNPTPNIYWIK-NQTKVD-------MSNPRYSLK-DG----FLQIENSREEDQGKYECVAENSMGTEHSK  192 (212)
T ss_dssp             CCEEECCEEECSSCCEEEEEE-TTEECC-------TTSTTEEEE-TT----EEEECSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CeEEEEEEeccCCCCeEEEEE-CCeEcc-------cCCCeEEcc-CC----eEEEccCChhhCEEEEEEeecCCCceeEE
Confidence            357888999999999999999 554432       112334332 22    89999999999999999998764332 2 


Q ss_pred             eEEEEEEcCC
Q psy16425         81 VGYLEVVVPP   90 (163)
Q Consensus        81 ~~~l~v~~~p   90 (163)
                      .+.|.|...+
T Consensus       193 ~~~l~V~~~~  202 (212)
T 2yd1_A          193 ATNLYVKVRR  202 (212)
T ss_dssp             CEEEEEEC--
T ss_pred             EEEEEEEecc
Confidence            3577777543

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.79  E-value=1.4e-08  Score=60.90  Aligned_cols=72  Identities=21%  Similarity=0.271  Sum_probs=48.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c---eEEeee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q---TILTIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~---~~~~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.+.+.|.||+... .   .+.... .......+|+.... ..+.++|.|.+++++|+|.|.|.+.+.
T Consensus        20 ~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           20 DRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSG-SGTDFTLTISNVQSEDLADYFCQQYSS   96 (111)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             CCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc-CCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            468889988777778899999642 1   111111 11111246777654 335678999999999999999999543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.79  E-value=5.9e-09  Score=61.05  Aligned_cols=66  Identities=20%  Similarity=0.386  Sum_probs=50.1

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE---Ee--ceEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE---DF--PFFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~---~~--~~l~i~~v~~~~~~  156 (163)
                      +|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+........   .+  ..|.|.+++.+|.+
T Consensus         5 ~P~~~~~p--~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   75 (100)
T 2kdg_A            5 PPRFIQVP--ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAG   75 (100)
T ss_dssp             EEECCCCC--CCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCE
T ss_pred             CCeEEeCC--CCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCE
Confidence            34444433  356788999999999999999999999999988765543321   11  37999999999875

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.79  E-value=1.5e-08  Score=58.85  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=46.1

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--Ee--ceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DF--PFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~--~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+++.|.|.+.+ |+|.+.|+++|.++....+...  ++  ..|.|.+++.+|.+
T Consensus        13 ~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G   73 (93)
T 1waa_A           13 YGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTG   73 (93)
T ss_dssp             CCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             cceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCE
Confidence            3678899999999999976 5588999999999876655443  22  37999999999976

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.78  E-value=8.8e-08  Score=59.01  Aligned_cols=89  Identities=17%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcC-C-ce--EEee-ee-eEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVD-T-QT--ILTI-QT-HVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~-~-~~--~~~~-~~-~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...... ...+.||+.. + ..  +... .. ......+|+....+. .++++|.|.+++.+|+|.|.|.+.+
T Consensus        17 ~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   96 (129)
T 3rrq_A           17 DNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAIS   96 (129)
T ss_dssp             SCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEe
Confidence            4678888876654 5679999853 1 11  1111 11 111224688877533 4678999999999999999999966


Q ss_pred             CC-Cc----eEeEEEEEEcCCc
Q psy16425         75 DP-MK----SQVGYLEVVVPPD   91 (163)
Q Consensus        75 ~~-~~----~~~~~l~v~~~p~   91 (163)
                      .. ..    +..+.|.|...+.
T Consensus        97 ~~~~~~~~~s~~~~L~V~~~~~  118 (129)
T 3rrq_A           97 LAPKLQIKESLRAELRVTERRA  118 (129)
T ss_dssp             CGGGCEEEECCCEEEEEECCCC
T ss_pred             cCCCceeeEeceEEEEEecCcc
Confidence            42 22    3456777776543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.78  E-value=5.7e-08  Score=63.28  Aligned_cols=75  Identities=12%  Similarity=0.239  Sum_probs=52.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCC-CCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRE-SDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~~~-~~~~~   80 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+        ....++...... ....|.|.++.. +|+|.|+|.+.|. +....
T Consensus       119 ~~~~l~C~~~~~p~p~v~W~~-~~~~~--------~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~  188 (197)
T 3lcy_A          119 STLRLHVMYIGRPVPAMTWFH-GQKLL--------QNSENITIENTE-HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDA  188 (197)
T ss_dssp             SCEEEEEEEEEESCCEEEEEE-TTEEC--------CCCSSEEEEECS-SEEEEEESSCCHHHHCEEEEEEEECSSCEEEE
T ss_pred             CeEEEEEEEeeeeCCeeEEeE-CCEEC--------CCCCceEEEEcC-CEEEEEEccccchhhCceEEEEEEcCcCceEE
Confidence            357888998999999999999 55544        223344443332 235899999995 8999999999776 44444


Q ss_pred             eEEEEEE
Q psy16425         81 VGYLEVV   87 (163)
Q Consensus        81 ~~~l~v~   87 (163)
                      .+.|.|.
T Consensus       189 ~~~l~V~  195 (197)
T 3lcy_A          189 ILDVEIQ  195 (197)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            4555554

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.78  E-value=1.5e-07  Score=56.09  Aligned_cols=71  Identities=13%  Similarity=0.255  Sum_probs=45.7

Q ss_pred             cceeEEEeeeeccCCC-----EEEEEEcCCceEEee-eeeE------EecCCeEEEEeCCCceEEEEEcccCCCCCeEEE
Q psy16425          2 AARMLIEIGEMLMAES-----TVAWLRVDTQTILTI-QTHV------ITKNHRIGVTHSETKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~-----~i~W~k~~~~~~~~~-~~~~------~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..++.|.|...+.|.+     .|.|++.+...+... .+..      ....+|+.+...   +++|.|.+++.+|+|.|.
T Consensus         9 G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~sL~I~~v~~~D~G~Y~   85 (110)
T 1ncn_A            9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSD---SWTLRLHNLQIKDKGLYQ   85 (110)
T ss_dssp             TSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETT---TTEEEECSCCGGGCEEEE
T ss_pred             CCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECC---CEEEEEcCCChHHCEEEE
Confidence            3468899987654433     499999643323211 1111      122456665532   359999999999999999


Q ss_pred             EEEEeC
Q psy16425         70 CQVNTD   75 (163)
Q Consensus        70 C~~~~~   75 (163)
                      |.+.+.
T Consensus        86 C~v~~~   91 (110)
T 1ncn_A           86 CIIHHK   91 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEEcC
Confidence            999655

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2e-09  Score=63.06  Aligned_cols=67  Identities=22%  Similarity=0.406  Sum_probs=50.2

Q ss_pred             cCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhhHh
Q psy16425         88 VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        88 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~  156 (163)
                      .+|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+........ ....|.|.+++.+|.+
T Consensus        10 ~~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G   77 (99)
T 2yr3_A           10 VAPSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHG   77 (99)
T ss_dssp             EEEEEEECC--CCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCB
T ss_pred             cCCceeecC--CCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCE
Confidence            345554433  356788999999999999999999999999987654432222 3357999999998875

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=1e-08  Score=60.12  Aligned_cols=66  Identities=24%  Similarity=0.463  Sum_probs=50.0

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC-Cce-EEeceEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG-NGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      +|.+...+  ....+.+|+++.|.|.+.+.|.|.+.|++++..+.... ... ..++.|.|.+++.+|.+
T Consensus         8 ~P~i~~~p--~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G   75 (100)
T 2edj_A            8 PPIILQGP--ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTG   75 (100)
T ss_dssp             SCEEEECC--CCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCC
T ss_pred             CCEEEeCc--CCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCE
Confidence            44444433  35678899999999999999999999999998875322 222 24568999999999875

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.77  E-value=3.3e-08  Score=67.76  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=52.0

Q ss_pred             ceeEEEeee---eccCCCEEEEEEcCCceEEeeeeeE---------E----ecCCeEEEEeCC-CceEEEEEcccCCCCC
Q psy16425          3 ARMLIEIGE---MLMAESTVAWLRVDTQTILTIQTHV---------I----TKNHRIGVTHSE-TKAWYLHIREVRESDR   65 (163)
Q Consensus         3 ~~~~~~~~~---~~~~~~~i~W~k~~~~~~~~~~~~~---------~----~~~~r~~~~~~~-~~~~~L~i~~v~~~d~   65 (163)
                      ..+.|.|..   .+.|.+.|.|++.++..........         .    ....|+.+.... ..+.+|.|.+++.+|+
T Consensus       134 ~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~  213 (268)
T 3mj6_A          134 DTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQ  213 (268)
T ss_dssp             CCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGC
T ss_pred             CcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhC
Confidence            357788887   6779999999995443211000000         0    112233332211 2345899999999999


Q ss_pred             eEEEEEEEeC-CCceEeEEEEEEc-CCcccccCCCCcEEEeCCCc
Q psy16425         66 GWYMCQVNTD-PMKSQVGYLEVVV-PPDILDYPTSTDMVIREGSN  108 (163)
Q Consensus        66 G~Y~C~~~~~-~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~g~~  108 (163)
                      |.|+|.+.+. +.....+.|.|.. +|.+...+.  ...+.+|+.
T Consensus       214 G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~p~--~~~~~~~q~  256 (268)
T 3mj6_A          214 GIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPT--PPTDKGQQG  256 (268)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECC--------------------
T ss_pred             eEEEEEEEcCCceEEEEEEEEEEcCCCeeeeCCC--CCCCCccee
Confidence            9999999775 3334455666643 444444332  333444444

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.76  E-value=6.4e-08  Score=62.64  Aligned_cols=77  Identities=19%  Similarity=0.345  Sum_probs=51.7

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEc---CCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEEEeC-C
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRV---DTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQVNTD-P   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~-~   76 (163)
                      ..+.|.|...+.| .+.|.|++.   +...+..      ...+++.+...+ ....|.|.+++ .+|+|.|+|.+.|. +
T Consensus        99 ~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~L~i~~v~~~~d~G~Y~C~a~N~~g  171 (184)
T 3b5h_A           99 ETAMLVCKSESVPPVTDWAWYKITDSEDKALMN------GSESRFFVSSSQ-GRSELHIENLNMEADPGQYRCNGTSSKG  171 (184)
T ss_dssp             SCEEEEEECCCSSCCCEEEEEECCSSSCEECCT------TGGGTEEEEEET-TEEEEEECSCCTTTSSEEEEEEEEETTE
T ss_pred             CcEEEEEEECCCCCCCeEEEEEcCCCCCEEeec------CCCCEEEEEecC-CeeEEEEeeccccccCceEEEEEEeCCC
Confidence            3678889999999 799999993   3222210      112455555432 34589999999 99999999999776 3


Q ss_pred             CceEeEEEEE
Q psy16425         77 MKSQVGYLEV   86 (163)
Q Consensus        77 ~~~~~~~l~v   86 (163)
                      .....+.|.|
T Consensus       172 ~~~~~~~l~V  181 (184)
T 3b5h_A          172 SDQAIITLRV  181 (184)
T ss_dssp             EEEEEEEEEE
T ss_pred             cceEEEEEEE
Confidence            3334444444

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=1.8e-08  Score=60.88  Aligned_cols=67  Identities=25%  Similarity=0.442  Sum_probs=51.4

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCC-ce-EEeceEEEEcchhhhHhh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN-GQ-EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~-~~-~~~~~l~i~~v~~~~~~~  157 (163)
                      +|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+..... .. ..++.|.|.+++.+|.+.
T Consensus         8 pP~i~~~p--~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   76 (118)
T 2eo9_A            8 PPVIRQGP--VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGR   76 (118)
T ss_dssp             SCCCSBCC--CCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCC
T ss_pred             CCEEEcCC--CCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEE
Confidence            45555433  357789999999999999999999999999987753222 22 356789999999999763

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.76  E-value=6.8e-08  Score=59.88  Aligned_cols=84  Identities=19%  Similarity=0.277  Sum_probs=52.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC----
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM----   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~----   77 (163)
                      ..+.|.|...+.  +.|.||+.. +......    ....+|+.....+ ..++|.|.+++.+|+|.|.|.+.+...    
T Consensus        33 ~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l----~~~~~r~~~~~~~-~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~  105 (133)
T 3khq_A           33 SMVKFHCYTNHS--GALTWFRKRGSQQPQEL----VSEEGRIVQTQNG-SVYTLTIQNIQYEDNGIYFCKQKCDSANHNV  105 (133)
T ss_dssp             CCEEEEEEESSS--SCEEEEEECTTSCCEEC----CCTTTTEEEEEET-TEEEEEECSCCGGGCEEEEEEESSCC-----
T ss_pred             CeEEEEEEeCCC--CEEEEEEeCCCCCCEEE----EEeCCCEEEEcCC-CEEEEEECCCChHHCEEEEEEEEeCCCCcce
Confidence            467888888766  889999963 2221110    1235677765543 467899999999999999999965421    


Q ss_pred             -ceEeEEEEEEcCCccc
Q psy16425         78 -KSQVGYLEVVVPPDIL   93 (163)
Q Consensus        78 -~~~~~~l~v~~~p~~~   93 (163)
                       ....+.|.|...|.+.
T Consensus       106 ~~g~gt~L~V~~~p~~~  122 (133)
T 3khq_A          106 TDSCGTELLVLGFSTLD  122 (133)
T ss_dssp             --CCCEEEEEC------
T ss_pred             eECCCEEEEEEecccch
Confidence             2344567776655443

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.75  E-value=1.4e-09  Score=66.27  Aligned_cols=77  Identities=16%  Similarity=0.139  Sum_probs=50.0

Q ss_pred             ceeEEEeeeeccCCCE-EEEEEcCCceEEeeeeeEEecCCeEEEE--eCCC-ceEEEEEcccCCCCC-eEEEEEEEeC-C
Q psy16425          3 ARMLIEIGEMLMAEST-VAWLRVDTQTILTIQTHVITKNHRIGVT--HSET-KAWYLHIREVRESDR-GWYMCQVNTD-P   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~-i~W~k~~~~~~~~~~~~~~~~~~r~~~~--~~~~-~~~~L~i~~v~~~d~-G~Y~C~~~~~-~   76 (163)
                      .++.|.|...+.|.|. |.|++ ++..+...      ...|+.+.  .... ....|.|.+++.+|+ |.|+|.+.|. +
T Consensus        29 ~~v~l~C~~~g~P~p~~i~W~~-~~~~l~~~------~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G  101 (122)
T 2cry_A           29 EKGQIKCFIRSTPPPDRIAWSW-KENVLESG------TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG  101 (122)
T ss_dssp             SCCCCCEEECCSSCCSEEEEES-SSCEECSE------EETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSC
T ss_pred             CCEEEEEEEeecCCCcEeEEEE-CCEEccCC------CCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCC
Confidence            3678889999999987 99999 45444211      12344432  1111 134899999999999 9999999776 3


Q ss_pred             CceEeEEEEE
Q psy16425         77 MKSQVGYLEV   86 (163)
Q Consensus        77 ~~~~~~~l~v   86 (163)
                      .....+.|.|
T Consensus       102 ~~~~~~~l~V  111 (122)
T 2cry_A          102 SDTEIIRLKE  111 (122)
T ss_dssp             EEEEEECCCC
T ss_pred             eEEEEEEEEE
Confidence            3333333333

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=4.2e-08  Score=60.88  Aligned_cols=85  Identities=14%  Similarity=0.211  Sum_probs=51.6

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCce---EEeeeeeEEecCCeEEEEeC----CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQT---ILTIQTHVITKNHRIGVTHS----ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~---~~~~~~~~~~~~~r~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...+. +.+.|.||+..+..   +.....   ....|+.....    ...+++|.|.+++.+|+|.|.|.+.+
T Consensus        24 ~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~---~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  100 (136)
T 2d9c_A           24 ESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKE---GHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFR  100 (136)
T ss_dssp             SCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSS---CCCSSBCCSSCSSSSSCCBCCEEESSCCTTTCEEEEEEEEE
T ss_pred             CCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCC---CcccceeeeeeeccCCCCEEEEEECCCCHHHCEEEEEEEEe
Confidence            468888887655 56789999965321   111110   00124332211    12357899999999999999999965


Q ss_pred             CCC---ce----EeEEEEEEcCC
Q psy16425         75 DPM---KS----QVGYLEVVVPP   90 (163)
Q Consensus        75 ~~~---~~----~~~~l~v~~~p   90 (163)
                      ...   ..    ..+.|.|...|
T Consensus       101 ~~~~~~~~~~~g~~t~L~V~~~~  123 (136)
T 2d9c_A          101 KGSPDDVEFKSGAGTELSVRAKP  123 (136)
T ss_dssp             CCSSSCEEEEECCCEEEEEECCC
T ss_pred             CCCCcccceeeCCCeEEEEEeCC
Confidence            432   11    34567777655

>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A

Probab=98.75  E-value=1.7e-07  Score=62.25  Aligned_cols=112  Identities=16%  Similarity=0.244  Sum_probs=64.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEeeeeeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEEeCC-
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILTIQTHVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVNTDP-   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~~~~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-   76 (163)
                      ..+.|.|..... ...+.||+.. +..   +....... ...+|+.... .....++|+|.+++++|+|.|.|.+.... 
T Consensus        19 ~svtL~C~~s~~-~~~v~Wyrq~~g~~~~~l~~~~~~~-~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Cav~~~~~   96 (205)
T 3qjh_A           19 TGSALRCNFTTT-MRAVQWFRKNSRGSLINLFYLASGT-KENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNT   96 (205)
T ss_dssp             CCEEEEEECSSC-EEEEEEEEEC-CCCEEEEEEESSEE-EEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             CCEEEEEEEECC-cceEEEEEECCCCCcEEEEEECCCC-ccCCCEEEEEcCCCCEEEEEEeccccccCeEEEEEEEcCCC
Confidence            457888877665 5689999963 221   11111111 3356777664 33567899999999999999999996321 


Q ss_pred             ---CceEeEEEEEEcCCcccccCCCCcEE--EeCCCcEEEEeEeccCCC
Q psy16425         77 ---MKSQVGYLEVVVPPDILDYPTSTDMV--IREGSNVTLKCAASGSPK  120 (163)
Q Consensus        77 ---~~~~~~~l~v~~~p~~~~~~~~~~~~--~~~g~~~~l~C~~~~~p~  120 (163)
                         .......|.|.....  .  +.+.+.  ......++|.|.+.+..+
T Consensus        97 ~~~~fG~GT~L~V~~~~~--~--~~p~V~~l~~~~~~~tl~Cl~~~f~P  141 (205)
T 3qjh_A           97 NKVVFGTGTRLQVLPNIQ--N--PDPAVYQLRDSKSSDKSVCLFTDFDS  141 (205)
T ss_dssp             CCEEEBCCEEEEEECCCS--S--CCCEEEEEEBCC--CCEEEEEESCCT
T ss_pred             CccccCCCEEEEEeCccc--C--CCCEEEEecccCCCcEEEEEEEcccc
Confidence               112234566653210  0  001111  111234789999988654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.75  E-value=1.8e-08  Score=58.74  Aligned_cols=57  Identities=21%  Similarity=0.417  Sum_probs=46.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--E--eceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--D--FPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~--~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+.+.|.|.+.|++++..+....+...  .  ...|.|.+++.+|.+
T Consensus        15 ~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   75 (99)
T 3puc_A           15 DTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSG   75 (99)
T ss_dssp             CEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCE
T ss_pred             cEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCE
Confidence            56788999999999999999999999999988765544432  1  126999999999875

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.75  E-value=1.4e-07  Score=55.62  Aligned_cols=69  Identities=17%  Similarity=0.328  Sum_probs=46.6

Q ss_pred             eeEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCC-ceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSET-KAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .+.|.|.+.+ .+.|.|+|.|.++..-.....   ....+......++ ..+.|.|.+|.+.|+|.|+|.+++.
T Consensus        31 ~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~---~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~  101 (122)
T 1xau_A           31 LFKIECPVKYCVHRPNVTWCKHNGTIWVPLEV---GPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN  101 (122)
T ss_dssp             CEEEEEEEECSSSCCCEEEEEECSSSEEECCC---BTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             eEEEEeEecCCCCCCcEEEEecCCeecccccc---ceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCC
Confidence            4678888855 689999999976543322110   1122333333332 4568999999999999999999764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.75  E-value=1.4e-08  Score=75.15  Aligned_cols=77  Identities=23%  Similarity=0.317  Sum_probs=50.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.+.|.+.  |.|.|.|++.++..+...     ....|+.....+    +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus       368 ~~~~l~C~~~--p~p~i~W~~~~~~~~~~~-----~~~~~~~~~~~g----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~  436 (452)
T 3zyi_A          368 RMAELKCRTP--PMSSVKWLLPNGTVLSHA-----SRHPRISVLNDG----TLNFSHVLLSDTGVYTCMVTNVAGNSNAS  436 (452)
T ss_dssp             SCCEECCBCC--TTSEEEEECTTSCEECSS-----CCCSSCEECTTS----CEECSSCCTTCCEEEEEEEECSSCEEEEE
T ss_pred             CEEEEEEeCC--CCCcEEEEeCCCcEeccC-----CCCCCEEECCCC----eEEEeecCHHHCEEEEEEEEcCCCcEEEE
Confidence            3577788776  999999999655443211     122355555444    7999999999999999999776 444455


Q ss_pred             EEEEEEcCC
Q psy16425         82 GYLEVVVPP   90 (163)
Q Consensus        82 ~~l~v~~~p   90 (163)
                      +.+.|...+
T Consensus       437 ~~l~v~~~~  445 (452)
T 3zyi_A          437 AYLNVSTAG  445 (452)
T ss_dssp             EEEEC----
T ss_pred             EEEEEEccc
Confidence            556555443

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.74  E-value=1.5e-08  Score=59.17  Aligned_cols=57  Identities=19%  Similarity=0.350  Sum_probs=45.5

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE---Ee--ceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE---DF--PFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~---~~--~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+.+.|.|.+.|++++..+........   .+  ..|.|.+++.+|.+
T Consensus        14 ~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   75 (99)
T 1u2h_A           14 DQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAG   75 (99)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCE
T ss_pred             ceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCE
Confidence            55788999999999999999999999999988765533221   11  26999999999875

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.74  E-value=1.4e-07  Score=57.77  Aligned_cols=88  Identities=9%  Similarity=0.167  Sum_probs=53.9

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcCC--c--eEEe-eeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVDT--Q--TILT-IQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~~--~--~~~~-~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...... ...+.||+...  .  .+.. .+.......+|+.+..+ ..+.++|.|.+++.+|+|.|.|.+...
T Consensus        18 ~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~   97 (124)
T 2nms_A           18 GSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKT   97 (124)
T ss_dssp             CCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcC
Confidence            4678888765443 23699999642  1  1111 11111123467777654 356789999999999999999999654


Q ss_pred             C-CceEeEEEEEEcCC
Q psy16425         76 P-MKSQVGYLEVVVPP   90 (163)
Q Consensus        76 ~-~~~~~~~l~v~~~p   90 (163)
                      + .....+.|.|..+|
T Consensus        98 ~~~~~~~v~L~V~~~~  113 (124)
T 2nms_A           98 GNDLGVTVQVTIDPAP  113 (124)
T ss_dssp             TEEEEEEEEEEEECCC
T ss_pred             CCCccEEEEEEEeCCC
Confidence            3 22333455555444

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.74  E-value=8.2e-08  Score=63.93  Aligned_cols=84  Identities=14%  Similarity=0.101  Sum_probs=52.1

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCce-EEEEEcccCCCCCeEEEEEEEeC-CCce
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKA-WYLHIREVRESDRGWYMCQVNTD-PMKS   79 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C~~~~~-~~~~   79 (163)
                      ..+.|.|.. .+.|.+.|.|++.++..+...        ..........+. ..|.|.+++.+|+|.|+|.+.+. +...
T Consensus       126 ~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~  197 (222)
T 4i0k_A          126 NMVTITCSSYQGYPEAEVFWKDGQGVPLTGN--------VTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQD  197 (222)
T ss_dssp             SEEEEEEEEEEEBSCCEEEEECTTSCBCCSE--------EEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEE
T ss_pred             ceEEEEEecccccCCCeEEEEcCCCccCCCC--------cceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCc
Confidence            367888888 788999999998555443211        111111112222 24789999999999999999776 5556


Q ss_pred             EeEEEEEEcCCcccc
Q psy16425         80 QVGYLEVVVPPDILD   94 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~   94 (163)
                      ..+.|.|..+|....
T Consensus       198 ~~~~l~V~~~p~~~~  212 (222)
T 4i0k_A          198 AHGSVTITGQPLTFP  212 (222)
T ss_dssp             EEEEEECCC------
T ss_pred             eEEEEEEeCCccccC
Confidence            666777776664433

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=2.5e-09  Score=64.54  Aligned_cols=72  Identities=18%  Similarity=0.206  Sum_probs=53.3

Q ss_pred             EEEEEcCC-cccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-----EeceEEEEcchhhhHh
Q psy16425         83 YLEVVVPP-DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        83 ~l~v~~~p-~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~  156 (163)
                      .|.|..+| .+...+  ....+.+|+++.|.|.+.+.|.|.+.|++++..+....+...     ....|.|.+++.+|.+
T Consensus         6 ~l~V~~~p~~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   83 (115)
T 2cr6_A            6 SGLVQGRRVHIIEDL--EDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSG   83 (115)
T ss_dssp             CCCCCSSCCEEEECC--CEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCE
T ss_pred             EEEEcCCCCeEeccC--ccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCE
Confidence            34454444 233322  467889999999999999999999999999998866644332     2247999999999876

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=98.73  E-value=2.4e-07  Score=55.08  Aligned_cols=88  Identities=15%  Similarity=0.187  Sum_probs=52.5

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCce-E---EeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQT-I---LTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~-~---~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..+.|.|..... ....+.||+..... .   ...........+|+.+.....+.++|+|.+++++|+|.|.|.+.....
T Consensus        13 ~svtl~C~~s~~~~~~~~~Wyrq~~g~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~L~I~~l~~~Dsg~Y~C~~~~~~~   92 (106)
T 2frg_P           13 SSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARG   92 (106)
T ss_dssp             CCEEEEEECCGGGTTSEEEEEEEETTEEEEEEECCBTCEEEETTTEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CcEEEEeEecCCcccCcEEEEECCCCCCcEEEEeCCcEeeecCCCEEEEcCCCCEEEEEEccCCHHHCEEEEEEeecCCC
Confidence            467888876432 23457899864211 1   111111223457887654445678999999999999999999965432


Q ss_pred             ceEeEEEEEEcCC
Q psy16425         78 KSQVGYLEVVVPP   90 (163)
Q Consensus        78 ~~~~~~l~v~~~p   90 (163)
                      .-....+.+.+.|
T Consensus        93 ~d~~~~v~L~V~p  105 (106)
T 2frg_P           93 PQILHRVSLNILP  105 (106)
T ss_dssp             EEEEEEEEEEECC
T ss_pred             CCEeEEEEEEEeC
Confidence            2222344444433

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.73  E-value=4.7e-08  Score=56.88  Aligned_cols=58  Identities=16%  Similarity=0.142  Sum_probs=47.1

Q ss_pred             CcEEEeCCCcEEEEeEeccC-CCCeEEEEECCeEEEecCCceE--Eec--eEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGS-PKPNITWRREGGELIAQGNGQE--DFP--FFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~~~~--~~~--~l~i~~v~~~~~~  156 (163)
                      ....+.+|+++.|.|.+.+. |.|.+.|++++..+........  .++  .|.|.+++.+|.+
T Consensus         9 ~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   71 (97)
T 2bk8_A            9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDG   71 (97)
T ss_dssp             CCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCE
T ss_pred             cCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCe
Confidence            36778899999999999997 9999999999988765544432  333  8999999999875

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.73  E-value=4.5e-08  Score=63.11  Aligned_cols=71  Identities=14%  Similarity=0.180  Sum_probs=50.1

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC--Cce
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP--MKS   79 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~--~~~   79 (163)
                      ..+.|.|.. .+.|.+.+.|++ ++..+..        .         ..+..|.|.+++.+|+|.|+|.+.+..  ..+
T Consensus       101 ~~~~l~C~~~~~~p~~~~~W~~-~g~~~~~--------~---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s  162 (176)
T 1f2q_A          101 QPLFLRCHGWRNWDVYKVIYYK-DGEALKY--------W---------YENHNISITNATVEDSGTYYCTGKVWQLDYES  162 (176)
T ss_dssp             SCEEEEEEEGGGCCEEEEEEEE-TTEECCS--------C---------CCSSEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCEEEEEEecCCCCceEEEEEE-CCEEEee--------e---------cCCCeEEECCCCcccCEEEEEEEEeCCcceEe
Confidence            357788887 466778999999 5554310        0         112389999999999999999998752  234


Q ss_pred             EeEEEEEEcCCc
Q psy16425         80 QVGYLEVVVPPD   91 (163)
Q Consensus        80 ~~~~l~v~~~p~   91 (163)
                      ..+.|.|..+|.
T Consensus       163 ~~~~l~V~~~p~  174 (176)
T 1f2q_A          163 EPLNITVIKAPR  174 (176)
T ss_dssp             CCEEEEEECSCC
T ss_pred             cCEEEEEecCCC
Confidence            456777777664

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.73  E-value=2.4e-08  Score=59.79  Aligned_cols=72  Identities=17%  Similarity=0.176  Sum_probs=47.6

Q ss_pred             ceeEEEeeeeccC----CCEEEEEEcC-Cce---EEeee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMA----ESTVAWLRVD-TQT---ILTIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~----~~~i~W~k~~-~~~---~~~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|...+.+    .+.|.||+.. +..   +.... .......+|+.... ..++++|.|.+++++|+|.|.|.+.
T Consensus        17 ~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~   95 (111)
T 1j05_L           17 QRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-SRTDFTLIIDPVEADDVATYYCQQT   95 (111)
T ss_dssp             SCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEc-cCCEEEEEECCCCcccCEEEEEEEe
Confidence            4688889877665    5789999963 221   11111 11011246777654 3356789999999999999999995


Q ss_pred             eC
Q psy16425         74 TD   75 (163)
Q Consensus        74 ~~   75 (163)
                      +.
T Consensus        96 ~~   97 (111)
T 1j05_L           96 NE   97 (111)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.72  E-value=2.8e-08  Score=57.21  Aligned_cols=52  Identities=21%  Similarity=0.388  Sum_probs=43.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++..+...     ....|.|.+++.+|.+
T Consensus        12 ~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G   63 (91)
T 3bfo_A           12 SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----TKKLYMVPYVDLEHQG   63 (91)
T ss_dssp             CEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC-----CSSEEEESSCCGGGCE
T ss_pred             ccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC-----CCCeEEECCCCHHhCE
Confidence            456889999999999999999999999999876433     2357899999988875

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.72  E-value=3.6e-08  Score=62.13  Aligned_cols=85  Identities=16%  Similarity=0.168  Sum_probs=53.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c---eEEeee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q---TILTIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~---~~~~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..+.|.|.....+.+.|.||+... .   .+.... ........|+.... ...+++|.|.+++++|+|.|.|.+.+...
T Consensus        32 ~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~  110 (146)
T 2yc1_B           32 ERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSG-SGTDFTLTISSLEPEDFAIYYCQQYRYSP  110 (146)
T ss_dssp             SCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSS
T ss_pred             CCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEec-CCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            468888988777778899999642 1   111111 11111246777654 23567899999999999999999965422


Q ss_pred             --ceEeEEEEEEc
Q psy16425         78 --KSQVGYLEVVV   88 (163)
Q Consensus        78 --~~~~~~l~v~~   88 (163)
                        ......|.|..
T Consensus       111 ~~fg~GT~L~V~~  123 (146)
T 2yc1_B          111 RTFGQGTKVEIKR  123 (146)
T ss_dssp             CEECCCEEEEEC-
T ss_pred             CeECCCEEEEEeC
Confidence              12234555543

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=1e-08  Score=61.68  Aligned_cols=57  Identities=16%  Similarity=0.131  Sum_probs=46.4

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC----------CceE-Ee---ceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG----------NGQE-DF---PFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~----------~~~~-~~---~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.+  .|.+.|++||.++..+.          +... .+   ..|+|.+++.+|++.
T Consensus        16 ~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~   86 (112)
T 2e6q_A           16 EDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGA   86 (112)
T ss_dssp             CCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSE
T ss_pred             CCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCcc
Confidence            4678999999999999987  77899999999987665          3333 12   379999999999874

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.72  E-value=5.1e-09  Score=65.09  Aligned_cols=73  Identities=14%  Similarity=0.172  Sum_probs=45.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeee-EEecCCeEEEEe--CCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTH-VITKNHRIGVTH--SETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~-~~~~~~r~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.|.+.|.|++.+.......... ......++....  ....+.+|.|.+++.+|+|.|+|.+.|.
T Consensus        37 ~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  112 (137)
T 3qr2_A           37 GSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASND  112 (137)
T ss_dssp             SCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccCEEEEEEEEec
Confidence            468899999999999999999443221100000 000011222221  1123458999999999999999999776

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.72  E-value=9.7e-08  Score=57.17  Aligned_cols=68  Identities=25%  Similarity=0.332  Sum_probs=46.6

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcC-CceEEeeeeeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVD-TQTILTIQTHVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~-~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...+.  +.+.|.||+.. +....    ......+|+.... ....+++|.|.+++++|+|.|.|.+.+
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A           16 ESLTIKCVLKDHSCGLSSTTWYRTQLGSTNE----KTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             CCEEEEEEEESCSSCCCEEEEEEEETTCCCC----EECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEeEECCCCCCCCEEEEEEeCCCCCce----EeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEEc
Confidence            468888887655  57899999953 21110    0112345666543 234578999999999999999999976

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.71  E-value=4.2e-08  Score=57.98  Aligned_cols=54  Identities=15%  Similarity=0.219  Sum_probs=42.7

Q ss_pred             eCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce---------EEeceEEEEcchhhhHhh
Q psy16425        104 REGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ---------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       104 ~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~v~~~~~~~  157 (163)
                      ..+..+.|.|.+.|.|.|.+.|++++..+.......         ...+.|.|.+++.+|.+.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   76 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEE
Confidence            357789999999999999999999999886654321         123459999999999763

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.71  E-value=6.1e-08  Score=58.52  Aligned_cols=67  Identities=21%  Similarity=0.317  Sum_probs=51.4

Q ss_pred             cCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec-CCceE-E-e---ceEEEEcchhhhHh
Q psy16425         88 VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ-GNGQE-D-F---PFFKRTKKKKKKKK  156 (163)
Q Consensus        88 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~-~-~---~~l~i~~v~~~~~~  156 (163)
                      .+|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+... .+... . +   ..|.|.+++.+|.+
T Consensus        14 ~~p~f~~~p--~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   86 (116)
T 2kkq_A           14 RAPMFIYKP--QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG   86 (116)
T ss_dssp             BCCCBSSCC--CCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCE
T ss_pred             CCCeEEeCC--CcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCE
Confidence            456666644  3678999999999999999999999999999887643 22222 1 1   27999999999875

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.71  E-value=4.2e-08  Score=60.18  Aligned_cols=72  Identities=18%  Similarity=0.267  Sum_probs=47.8

Q ss_pred             ceeEEEeeeeccC----CCEEEEEEcCC--ce--EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMA----ESTVAWLRVDT--QT--ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~----~~~i~W~k~~~--~~--~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.....+    .+.|.||+...  .+  +... .........|+.... ...+++|.|.+++++|+|.|.|.+.
T Consensus        17 ~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~   95 (126)
T 4ffy_L           17 QRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSG-SETDFTLTIDSVETDDAATYYCQQN   95 (126)
T ss_dssp             SCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec-CCCEEEEEECCCCHHHCEEEEEEEe
Confidence            4688889887766    67899999631  11  1111 111112245776653 2357899999999999999999996


Q ss_pred             eC
Q psy16425         74 TD   75 (163)
Q Consensus        74 ~~   75 (163)
                      +.
T Consensus        96 ~~   97 (126)
T 4ffy_L           96 NE   97 (126)
T ss_dssp             SS
T ss_pred             cC
Confidence            53

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.71  E-value=6e-08  Score=63.89  Aligned_cols=81  Identities=19%  Similarity=0.246  Sum_probs=49.8

Q ss_pred             ceeEEEee-eeccCCCEEEEEEcCCc-eEEeeeeeE-EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCc
Q psy16425          3 ARMLIEIG-EMLMAESTVAWLRVDTQ-TILTIQTHV-ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMK   78 (163)
Q Consensus         3 ~~~~~~~~-~~~~~~~~i~W~k~~~~-~~~~~~~~~-~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~   78 (163)
                      ..+.|.|. ..+.|.+.|.|++ ++. .+....... .....++....   ....|.|.+++.+|+|.|+|.+.|. +..
T Consensus       120 ~~~~l~C~~~~~~p~~~i~W~~-~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          120 NRAVLTCSEHDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTIDP---KSGDLIFDPVTAFDSGEYYCQAQNGYGTA  195 (212)
T ss_dssp             SCEEEEEECSCCBSCCEEEEEE-TTEESBC-----CBSCSSSCEEECT---TTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             CeEEEEEEcccCcCCCEEEEEe-CCcccccccccccccccCceeEecC---CCceEEEEecChhhCcEEEEEEccccCCc
Confidence            35788888 7889999999999 554 442211100 00112232221   1237999999999999999999876 333


Q ss_pred             --eEeEEEEEE
Q psy16425         79 --SQVGYLEVV   87 (163)
Q Consensus        79 --~~~~~l~v~   87 (163)
                        +..+.|.|.
T Consensus       196 ~~s~~~~l~V~  206 (212)
T 1f97_A          196 MRSEAAHMDAV  206 (212)
T ss_dssp             EECCCEEEEEE
T ss_pred             cccceEEEEEE
Confidence              334445444

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.71  E-value=1.2e-08  Score=64.71  Aligned_cols=69  Identities=20%  Similarity=0.296  Sum_probs=52.7

Q ss_pred             EEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEE-----eceEEEEcchhhhHh
Q psy16425         86 VVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQED-----FPFFKRTKKKKKKKK  156 (163)
Q Consensus        86 v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~-----~~~l~i~~v~~~~~~  156 (163)
                      +..+|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++++..+.........     ...|.|.+++.+|.+
T Consensus        38 v~~~P~~~~~~--~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  111 (154)
T 1fhg_A           38 PHVKPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA  111 (154)
T ss_dssp             CCEEEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCE
T ss_pred             CCCCCeEEccC--CcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCE
Confidence            33455555543  3567889999999999999999999999999887655444332     348999999999875

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.70  E-value=5e-08  Score=66.04  Aligned_cols=68  Identities=16%  Similarity=0.220  Sum_probs=44.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeee---eeEE-------------ecCCeEEEEeCCCceEEEEEcccCCCCCe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQ---THVI-------------TKNHRIGVTHSETKAWYLHIREVRESDRG   66 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~---~~~~-------------~~~~r~~~~~~~~~~~~L~i~~v~~~d~G   66 (163)
                      ..+.|.|...+.|.|.|.|++. +..+....   ...+             ....+......    ..|.|.+++.+|+|
T Consensus       152 ~~v~L~C~~~g~p~p~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~v~~~D~G  226 (250)
T 2fbo_J          152 NDITMTCPCTDCANANVTWYTG-PTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGA----RNLVIRAAKITDAG  226 (250)
T ss_dssp             CCEEECCCEESCTTCEEEEEEE-EECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETT----TEEEECSCCGGGCE
T ss_pred             CcEEEEEEecCCCCCeeEEEeC-CCcccccccCcceeEeccCCCCccccCceEecccccCCc----cEEEEecCCcccCE
Confidence            4688999999989999999994 33321100   0000             00122222121    38999999999999


Q ss_pred             EEEEEEEeC
Q psy16425         67 WYMCQVNTD   75 (163)
Q Consensus        67 ~Y~C~~~~~   75 (163)
                      .|+|.+.|.
T Consensus       227 ~Y~C~a~N~  235 (250)
T 2fbo_J          227 RVWCELATG  235 (250)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEecCC
Confidence            999999874

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.70  E-value=9.4e-08  Score=57.20  Aligned_cols=72  Identities=19%  Similarity=0.331  Sum_probs=49.1

Q ss_pred             ceeEEEeeee-ccCCCEEEEEEcCC-c---eEEe-e--eee-EE--ec-CCeEEEEeCCCceEEEEEcccCCCCCeEEEE
Q psy16425          3 ARMLIEIGEM-LMAESTVAWLRVDT-Q---TILT-I--QTH-VI--TK-NHRIGVTHSETKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         3 ~~~~~~~~~~-~~~~~~i~W~k~~~-~---~~~~-~--~~~-~~--~~-~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      ..+.|.|... +.+...|.||+... .   .+.. .  +.. ..  .. .+|+..... .++++|.|.+++++|+|.|.|
T Consensus        15 ~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~L~I~~~~~~DsG~Y~C   93 (111)
T 2qhl_A           15 ENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVN-DQKFDLNIIGTREDDGGEYFC   93 (111)
T ss_dssp             CCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEES-SSBEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEc-CCeEEEEECCCChhHCEEEEE
Confidence            4688889876 66678899999642 1   1111 1  111 11  11 567877654 467899999999999999999


Q ss_pred             EEEeC
Q psy16425         71 QVNTD   75 (163)
Q Consensus        71 ~~~~~   75 (163)
                      .+.+.
T Consensus        94 ~~~~~   98 (111)
T 2qhl_A           94 GEVEG   98 (111)
T ss_dssp             EEEET
T ss_pred             EEccC
Confidence            99654

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=3.7e-08  Score=58.71  Aligned_cols=66  Identities=23%  Similarity=0.329  Sum_probs=49.3

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec-CCceEE---e--ceEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ-GNGQED---F--PFFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~---~--~~l~i~~v~~~~~~  156 (163)
                      +|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+... ......   .  ..|.|.+++.+|.+
T Consensus         8 ~P~~~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   79 (110)
T 2dm2_A            8 APFFEMKL--KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDG   79 (110)
T ss_dssp             CCCBSSCC--CCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCS
T ss_pred             CCEEEecC--cCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCE
Confidence            45555433  3677899999999999999999999999998877542 222221   1  26999999998875

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=4.1e-08  Score=57.78  Aligned_cols=56  Identities=16%  Similarity=0.242  Sum_probs=46.1

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--E--eceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--D--FPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~--~~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+.+.|.|.+  .|.|.+.|+++|..+....+...  .  ...|.|.+++.+|.+
T Consensus        15 ~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G   74 (100)
T 2yuz_A           15 TDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEG   74 (100)
T ss_dssp             CCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCS
T ss_pred             CceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCE
Confidence            46788999999999999  79999999999999876655443  2  237999999999976

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.70  E-value=5.1e-08  Score=58.64  Aligned_cols=72  Identities=18%  Similarity=0.251  Sum_probs=47.5

Q ss_pred             ceeEEEeeeeccC------CCEEEEEEcCC-c-e--EEeee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425          3 ARMLIEIGEMLMA------ESTVAWLRVDT-Q-T--ILTIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         3 ~~~~~~~~~~~~~------~~~i~W~k~~~-~-~--~~~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      ..+.|.|...+.+      .+.|.||+... . +  +.... .......+|+.... ..++++|.|.+++++|+|.|.|.
T Consensus        17 ~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~   95 (114)
T 1eeq_A           17 ERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSG-SGTDFTLTISSLQAEDVAVYYCQ   95 (114)
T ss_dssp             SCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEee-cCCEEEEEECCCCcccCEEEEEE
Confidence            4688888876665      37899999641 1 1  11111 11111246777654 34577899999999999999999


Q ss_pred             EEeC
Q psy16425         72 VNTD   75 (163)
Q Consensus        72 ~~~~   75 (163)
                      +.+.
T Consensus        96 ~~~~   99 (114)
T 1eeq_A           96 QYYS   99 (114)
T ss_dssp             ECSS
T ss_pred             EeeC
Confidence            9543

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=98.70  E-value=1.2e-06  Score=60.21  Aligned_cols=109  Identities=15%  Similarity=0.225  Sum_probs=67.7

Q ss_pred             eeEEEeeee-ccC---CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCc
Q psy16425          4 RMLIEIGEM-LMA---ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMK   78 (163)
Q Consensus         4 ~~~~~~~~~-~~~---~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~   78 (163)
                      .+.|.|... +.|   +..++|+| ++..+        ...           ...|.|..+...|+|.|+|.+.+. +..
T Consensus        19 sVTLTatVaGGkP~pspyTYqWyK-DG~~I--------sGa-----------T~tLti~s~t~sdSG~YqCvVTDa~Gcs   78 (304)
T 3shs_A           19 GFTLTATVAGDEPLPSNLTYTWTK-DDQPH--------ENN-----------TATLTVADATSENAGSYKVTVQDTDTMT   78 (304)
T ss_dssp             CEEEEEEEEESSSCCCCEEEEEEE-TTEEC--------SCC-----------SSEEEESSCCGGGCEEEEEEEEETTTCC
T ss_pred             CEEEEEEecCCCCCCCCceEEEEE-CCccc--------cCC-----------cceEEeeeccccCCeEEEEEEEECCCCe
Confidence            456777643 445   45899999 55443        111           127999999999999999999765 333


Q ss_pred             eEeEEEEEEcCCc--ccccCCCCcEEEeCCCcEEEEeEe--c-cCC-----CCeEEEEECCeEEE
Q psy16425         79 SQVGYLEVVVPPD--ILDYPTSTDMVIREGSNVTLKCAA--S-GSP-----KPNITWRREGGELI  133 (163)
Q Consensus        79 ~~~~~l~v~~~p~--~~~~~~~~~~~~~~g~~~~l~C~~--~-~~p-----~p~v~W~~~~~~~~  133 (163)
                      .....+.+...+.  +.... .....+..|..+.|.+.+  . |.|     ...+.|++++..+.
T Consensus        79 ~tSs~VtVT~~a~l~i~it~-P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Is  142 (304)
T 3shs_A           79 SVESEVFLMEEAELIVNITE-PQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID  142 (304)
T ss_dssp             EEECCCEEECBCCEEEEESS-CSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEE
T ss_pred             eeeeeEEEeccCceeEEecC-CCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEcc
Confidence            2222333333222  21111 123445667889999887  5 344     35899999998764

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.69  E-value=2.8e-07  Score=64.49  Aligned_cols=116  Identities=16%  Similarity=0.222  Sum_probs=72.4

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-CceE
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-MKSQ   80 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~   80 (163)
                      +..+.+.|...-..+..+.|.-.-....               ....+.....|.|.+++..  +.|.|.+...+ ....
T Consensus        14 G~sv~l~Cs~~c~~p~~~~~~t~l~~~~---------------~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~   76 (291)
T 1mq8_A           14 GGSVLVTCSTSCDQPKLLGIETPLPKKE---------------LLLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTA   76 (291)
T ss_dssp             TCEEEEEEEECCSSCSEEEEECSSCCCC---------------CCCSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEE
T ss_pred             CCeEEEEEeCCCCCCccceEEecCCCcc---------------cccCCCceEEEEEEecccC--CeEEEEEEcCCccEEE
Confidence            3467788887533333478864211110               0001111225788888854  46999996543 3345


Q ss_pred             eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCC--eEEEEECCeEEEec
Q psy16425         81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKP--NITWRREGGELIAQ  135 (163)
Q Consensus        81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p--~v~W~~~~~~~~~~  135 (163)
                      .+.+.|..+|........ ...+.+|+.++|.|.+.+ .|.+  .|+|++++..+...
T Consensus        77 ~v~l~V~~~P~~v~I~~~-~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~  133 (291)
T 1mq8_A           77 KTFLTVYWTPERVELAPL-PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE  133 (291)
T ss_dssp             ECEEEECBCCSCCCBCCC-CSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEE
T ss_pred             EEEEEEecCCCCCEEecC-CccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecc
Confidence            567888888876554432 234788999999999986 4554  58999999887544

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.69  E-value=5e-08  Score=59.14  Aligned_cols=71  Identities=15%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCce--EEeeeeeEEecCCeEEEE----eCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQT--ILTIQTHVITKNHRIGVT----HSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~--~~~~~~~~~~~~~r~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|...+. +.+.|.||+.++..  +......  ....|+...    ......++|.|.+++++|+|.|.|.+.+.
T Consensus        23 ~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  100 (120)
T 2yz1_A           23 DSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTG--EHFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYCVKFQK  100 (120)
T ss_dssp             CCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECE--ECTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEEEEEEEEC
T ss_pred             CCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCC--cccCcccceeeccccCCCeEEEEECCCCHHHCEEEEEEEEcC
Confidence            468888887654 56789999964321  2111110  011233211    11234568999999999999999999654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.69  E-value=2.1e-07  Score=62.68  Aligned_cols=90  Identities=18%  Similarity=0.217  Sum_probs=50.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEc---CCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCc
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRV---DTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMK   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~   78 (163)
                      ..+.|.|...+.|.+.+.|++.   ++..+...+...... ..............|.|.+++.+|+|.|+|.+.|. +..
T Consensus       130 ~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~  208 (241)
T 3grw_A          130 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV-LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA  208 (241)
T ss_dssp             CCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEE-EEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeee-eeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceE
Confidence            3578899999999999999993   222221100000000 00000111123458999999999999999999776 445


Q ss_pred             eEeEEEEEEcCCccc
Q psy16425         79 SQVGYLEVVVPPDIL   93 (163)
Q Consensus        79 ~~~~~l~v~~~p~~~   93 (163)
                      ...+.|.|..+|...
T Consensus       209 ~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          209 EKAFWLSVHGPRAAE  223 (241)
T ss_dssp             EEEEEEEC-------
T ss_pred             EEEEEEEecCCCCCC
Confidence            555667776666543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.69  E-value=9.6e-08  Score=63.31  Aligned_cols=71  Identities=14%  Similarity=0.148  Sum_probs=47.6

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC--Cce
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP--MKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~--~~~   79 (163)
                      ..+.|.|...+. |.+.|.|++ ++..+...             ...    ..|.|.+++.+|+|.|+|.+.|..  ..+
T Consensus       104 ~~v~L~C~~~~~~p~~~v~W~k-~g~~~~~~-------------~~~----~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s  165 (204)
T 3sgj_C          104 DPIHLRCHSWKNTALHKVTYLQ-NGKGRKYF-------------HHN----SDFYIPKATLKDSGSYFCRGLVGSKNVSS  165 (204)
T ss_dssp             CCEEEEEEEGGGCCCEEEEEEE-TTEEEEEE-------------EEC----CCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CcEEEEEEecCCCCCceEEEEE-CCcEeecc-------------cCC----ceEEECcCCcccCEEEEEEEEeCCCceec
Confidence            367888888554 668899999 55544211             011    279999999999999999998742  334


Q ss_pred             EeEEEEEEcCCc
Q psy16425         80 QVGYLEVVVPPD   91 (163)
Q Consensus        80 ~~~~l~v~~~p~   91 (163)
                      ..+.|.|..+|.
T Consensus       166 ~~~~l~V~~~~~  177 (204)
T 3sgj_C          166 ETVQITITQGLA  177 (204)
T ss_dssp             CCEEEEEEC---
T ss_pred             CcEEEEEeCcCC
Confidence            455677765543

>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1

Probab=98.69  E-value=2.2e-09  Score=71.62  Aligned_cols=118  Identities=18%  Similarity=0.215  Sum_probs=47.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c----eEEeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q----TILTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~----~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|...+.. ..|.||+... .    .++..........+|+.+..+ ..++++|.|.+++.+|+|.|.|.+.+..
T Consensus        17 ~~v~L~C~~s~~~-~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~   95 (207)
T 1ymm_D           17 ENATMNCSYKTSI-NNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTS   95 (207)
T ss_dssp             CCCCBCCBCSSCE-EEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEETT
T ss_pred             CCEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEcCCCccccCCCEEEEEcCCCCEEEEEECcCCcccCceEEEEEEcCC
Confidence            4677788765555 7899998642 1    122221111123566665532 2356789999999999999999996531


Q ss_pred             ---C--ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCCCeE
Q psy16425         77 ---M--KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPKPNI  123 (163)
Q Consensus        77 ---~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~v  123 (163)
                         .  ......|.|...+... .|. ........+.+.|.|.+.+ +|.|.+
T Consensus        96 ~~~~~~~g~gt~L~V~~~~~~~-~P~-V~~~~~~~~~vtL~C~~~gf~P~p~v  146 (207)
T 1ymm_D           96 GTYKYIFGTGTRLKVLANIQNP-DPA-VYQLRDSKSSDKSVCLFTDFDSQTNV  146 (207)
T ss_dssp             SCSCEEECC--------------------------------------------
T ss_pred             CcceeeECCCEEEEEECCCCCC-CCE-EEecCCCCCCeEEEEEccccccCCcc
Confidence               1  1122345554321100 010 0000011247899999987 688866

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.69  E-value=5.7e-08  Score=59.95  Aligned_cols=73  Identities=19%  Similarity=0.230  Sum_probs=47.7

Q ss_pred             ceeEEEeeee-------ccCCCEEEEEEcCCc-----eEEeeeee---EEecCCeEEEEeCC-CceEEEEEcccCCCCCe
Q psy16425          3 ARMLIEIGEM-------LMAESTVAWLRVDTQ-----TILTIQTH---VITKNHRIGVTHSE-TKAWYLHIREVRESDRG   66 (163)
Q Consensus         3 ~~~~~~~~~~-------~~~~~~i~W~k~~~~-----~~~~~~~~---~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G   66 (163)
                      ..+.|.|...       ......|.||+....     .+......   .....+|+.+..+. .++++|.|.+++.+|+|
T Consensus        22 ~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG  101 (132)
T 1nko_A           22 MCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAG  101 (132)
T ss_dssp             CCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCCEEECSCCGGGCE
T ss_pred             CeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceEEEEcccCcccCe
Confidence            4678888865       345678999995421     12211100   01234788876542 46779999999999999


Q ss_pred             EEEEEEEeC
Q psy16425         67 WYMCQVNTD   75 (163)
Q Consensus        67 ~Y~C~~~~~   75 (163)
                      .|.|.+.+.
T Consensus       102 ~Y~C~v~~~  110 (132)
T 1nko_A          102 RYFFRMEKG  110 (132)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEEEcC
Confidence            999999654

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.68  E-value=4.4e-08  Score=58.46  Aligned_cols=73  Identities=15%  Similarity=0.158  Sum_probs=47.5

Q ss_pred             ceeEEEee-eeccC-CCEEEEEEcCCceEE--ee-eeeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIG-EMLMA-ESTVAWLRVDTQTIL--TI-QTHVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~-~~~~~-~~~i~W~k~~~~~~~--~~-~~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|. ..+.+ .+.+.||+....+..  .. ........+|+.... ...+.++|.|.+++++|+|.|.|.+.+.
T Consensus        16 ~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   94 (109)
T 1pew_A           16 KTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDA   94 (109)
T ss_dssp             SCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence            46888888 65554 478999996522111  00 000011246777764 3346789999999999999999999653

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=98.68  E-value=1.5e-07  Score=63.78  Aligned_cols=125  Identities=17%  Similarity=0.215  Sum_probs=69.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce----EEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT----ILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-   76 (163)
                      ..+.|.|.....-...+.||++. +..    ++.......-...|+.-+..+ .+++|.|.+++++|++.|.|...... 
T Consensus        17 ~~vtisC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sg-t~ftLtIs~lq~eD~A~YyC~~~~~~~   95 (259)
T 4f9l_D           17 DTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSA-TGFTLTISSLQPEDIATYYCQQGHSYP   95 (259)
T ss_dssp             CEEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-TEEEEEEESCCGGGCEEEEEEECSSSS
T ss_pred             CCEEEEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccC-CeEEEEEcccChhhCEEEEEeecCCCC
Confidence            46788886654444568999863 221    111111111123566655443 56789999999999999999863221 


Q ss_pred             -CceEeEEEEEEc---CCcc-----------------cccCCCCcEEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425         77 -MKSQVGYLEVVV---PPDI-----------------LDYPTSTDMVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus        77 -~~~~~~~l~v~~---~p~~-----------------~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                       .......|++.-   .|..                 ..........+.+|+++.|.|.+.|+.-  -.+.|.+.
T Consensus        96 ~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tfs~y~~~WvRQ  170 (259)
T 4f9l_D           96 YTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTFTRYYLYWVKQ  170 (259)
T ss_dssp             CCBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCcccCcEEEEEE
Confidence             111122333321   0100                 0000111345778999999999998642  34778763

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.68  E-value=6.3e-08  Score=58.81  Aligned_cols=72  Identities=11%  Similarity=0.145  Sum_probs=47.8

Q ss_pred             ceeEEEeeeeccC---CCEEEEEEcCC-ce---EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMA---ESTVAWLRVDT-QT---ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~---~~~i~W~k~~~-~~---~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.....+   ...+.||+... ..   +... ........+|+..... .++++|.|.+++.+|+|.|.|.+.+
T Consensus        16 ~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~L~I~~~~~~DsG~Y~C~~~~   94 (120)
T 1oaq_L           16 ETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-GNKAALTITGAQTEDEAIYFCALWY   94 (120)
T ss_dssp             CEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEE-TTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecC-CCeEEEEECCCChhhCeEEEEEEcc
Confidence            4688888876654   57899998532 11   1111 1111112467776643 3578999999999999999999965


Q ss_pred             C
Q psy16425         75 D   75 (163)
Q Consensus        75 ~   75 (163)
                      .
T Consensus        95 ~   95 (120)
T 1oaq_L           95 S   95 (120)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.68  E-value=8.6e-08  Score=57.44  Aligned_cols=71  Identities=15%  Similarity=0.228  Sum_probs=48.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c-e--EEeee-eeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q-T--ILTIQ-THVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~-~--~~~~~-~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.....+...|.||+... . +  +.... .......+|+.+.. ...++++|.|.+++++|+|.|.|.+.
T Consensus        16 ~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~   92 (112)
T 2z35_A           16 DFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALS   92 (112)
T ss_dssp             CCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCSEEEEEEE
T ss_pred             CCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            468888987776778999999642 1 1  11111 00111246777663 23467799999999999999999995

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=98.68  E-value=1.9e-07  Score=70.91  Aligned_cols=120  Identities=15%  Similarity=0.182  Sum_probs=70.0

Q ss_pred             eEEEeeeeccCC----CEEEEEEcCCceEEeeeee--EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC-
Q psy16425          5 MLIEIGEMLMAE----STVAWLRVDTQTILTIQTH--VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM-   77 (163)
Q Consensus         5 ~~~~~~~~~~~~----~~i~W~k~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~-   77 (163)
                      ..|.|.+.+..+    ..|+|++. +..+......  ....++.+.+.      ..|.|......|.+.|+|.+.+... 
T Consensus       361 ~~l~C~~~~~~p~~~~i~v~W~~~-~~~~~~~~t~~~~~~~n~~~~~~------s~L~i~~~~~~~~~~y~C~v~~~~~~  433 (551)
T 1ntl_A          361 PKVTCVVVDISKDDPEVQFSWFVD-DVEVHTAQTQPREEQFNSTFRSV------SELPIMHQDWLNGKEFKCRVNSAAFP  433 (551)
T ss_pred             cceEEEEEecccCCCceEEEEEEC-CccccccccCCceECCCCeEEEE------EeeEcCHHHccCCceEEEEEecCCCC
Confidence            345555554443    58999994 4443211110  01122333332      2688888888889999999965532 


Q ss_pred             ce--EeEEEE--EEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425         78 KS--QVGYLE--VVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus        78 ~~--~~~~l~--v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      ..  ..+.+.  ..++|.+...+.  ......|+.+.|.|.+.+ +|+ ..|+|++++..+.
T Consensus       434 ~~~~~~~~~~~~~~~~P~V~~~~~--~~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~  493 (551)
T 1ntl_A          434 APIEKTISKTKGRPKAPQLYTIPP--PKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE  493 (551)
T ss_pred             CCeEEEEecCCCCCcCCceEEeCC--ChhhccCCceEEEEEEEEeECCCCEEEEEECCEEcc
Confidence            11  222222  234565544332  122346889999999998 454 4799999998764

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.68  E-value=9.6e-08  Score=64.38  Aligned_cols=73  Identities=14%  Similarity=0.242  Sum_probs=49.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---EEe-eeeeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---ILT-IQTHVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~~~-~~~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.|.+.|.|++.+. ..   +.. .........+|+.... ......+|.|.+++.+|+|.|+|.+.+.
T Consensus       143 ~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          143 ETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT  221 (238)
T ss_dssp             SCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence            367889999888999999999542 11   111 0000112235666553 2335678999999999999999999765

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.67  E-value=4.4e-07  Score=55.89  Aligned_cols=71  Identities=18%  Similarity=0.183  Sum_probs=46.2

Q ss_pred             ceeEEEeeee---ccCCCEEEEEEcCCce---EEeeee----------------eE--EecCCeEEEEeCCCceEEEEEc
Q psy16425          3 ARMLIEIGEM---LMAESTVAWLRVDTQT---ILTIQT----------------HV--ITKNHRIGVTHSETKAWYLHIR   58 (163)
Q Consensus         3 ~~~~~~~~~~---~~~~~~i~W~k~~~~~---~~~~~~----------------~~--~~~~~r~~~~~~~~~~~~L~i~   58 (163)
                      ..+.|.|...   ..+.+.|.||+.+...   +.....                ..  ....+|+.+..  .++.+|.|.
T Consensus        20 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~sL~I~   97 (135)
T 1xt5_A           20 GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN--LAAPTLRLT   97 (135)
T ss_dssp             SCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESC--TTSCCEEEC
T ss_pred             CCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEec--CCCCeEEEC
Confidence            4678888754   3577899999964321   111100                00  11226766544  235689999


Q ss_pred             ccCCCCCeEEEEEEEeC
Q psy16425         59 EVRESDRGWYMCQVNTD   75 (163)
Q Consensus        59 ~v~~~d~G~Y~C~~~~~   75 (163)
                      +++.+|+|.|.|.+.+.
T Consensus        98 ~v~~~D~G~Y~C~v~~~  114 (135)
T 1xt5_A           98 HVHPQDGGRYWCQVAQW  114 (135)
T ss_dssp             SCCGGGCEEEEEEEECS
T ss_pred             CCChhhCcEEEEEEEcC
Confidence            99999999999999654

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.67  E-value=1.5e-08  Score=59.38  Aligned_cols=57  Identities=18%  Similarity=0.328  Sum_probs=46.5

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc---eE--EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG---QE--DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~---~~--~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++..+......   ..  .+..|.|.+++.+|.+
T Consensus        17 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   78 (100)
T 3caf_A           17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG   78 (100)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCE
T ss_pred             EEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCE
Confidence            567889999999999999999999999999887654332   11  3358999999999875

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.67  E-value=5.2e-08  Score=58.86  Aligned_cols=69  Identities=16%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             EEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--------EeceEEEEcchhhh
Q psy16425         83 YLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--------DFPFFKRTKKKKKK  154 (163)
Q Consensus        83 ~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--------~~~~l~i~~v~~~~  154 (163)
                      .|.|.++|.+......   .  ......|.|.+.|.|.|.+.|++++..+........        ..+.|.|.+++.+|
T Consensus         2 ~L~V~~pP~i~~~~~~---~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   76 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEP---E--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYN   76 (118)
T ss_dssp             --CCCCCCCCCCCCCC---C--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGG
T ss_pred             EEEEecCCceeccCCC---e--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhc
Confidence            4566777776554321   1  225678899999999999999999998866543332        35689999999998


Q ss_pred             Hh
Q psy16425        155 KK  156 (163)
Q Consensus       155 ~~  156 (163)
                      ++
T Consensus        77 ~G   78 (118)
T 1wwc_A           77 NG   78 (118)
T ss_dssp             CE
T ss_pred             CE
Confidence            76

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.67  E-value=4.2e-08  Score=57.74  Aligned_cols=65  Identities=17%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-Eec---eEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFP---FFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~---~l~i~~v~~~~~~  156 (163)
                      +|.+...+  ....+.+|+++.|.|.+.+.|.| +.|++++..+....+... ..+   .|.|.+++.+|.+
T Consensus         8 pp~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G   76 (103)
T 2e7b_A            8 PVRFQEAL--KDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSG   76 (103)
T ss_dssp             CCCCTBCC--CCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCC
T ss_pred             CCEEEecC--ccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCE
Confidence            44444433  36788999999999999999988 999999988755444332 222   5999999999876

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.11  E-value=2.6e-09  Score=64.06  Aligned_cols=72  Identities=14%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---E-EeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---I-LTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~-~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...+.+.+.|.||+... ..   + ...........+|+.+..+ ..++++|.|.+++++|+|.|.|.+.+
T Consensus        15 ~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   92 (110)
T 1u3h_A           15 ETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASA   92 (110)
Confidence            367888888777788999998531 11   1 1111111233567766553 33567899999999999999999954

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=98.66  E-value=4.2e-08  Score=59.87  Aligned_cols=86  Identities=17%  Similarity=0.137  Sum_probs=51.2

Q ss_pred             cceeEEEeeeeccCC-----CEEEEEEcCCceEEeeeee-EE-ec---CCeEEEEeCC--CceEEEEEcccCC-CCCeEE
Q psy16425          2 AARMLIEIGEMLMAE-----STVAWLRVDTQTILTIQTH-VI-TK---NHRIGVTHSE--TKAWYLHIREVRE-SDRGWY   68 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~-----~~i~W~k~~~~~~~~~~~~-~~-~~---~~r~~~~~~~--~~~~~L~i~~v~~-~d~G~Y   68 (163)
                      ..+++|.|.....+.     ..|.|++ ++..+....+. .. ..   -.+..+..+.  .|+++|+|.+++. +|+|.|
T Consensus        16 n~~vtLpC~l~~~~~~~~~~m~V~W~~-~~~~i~~~~G~~~~~~q~~~~~~a~l~~~~l~~GnaSL~i~~v~~~sD~G~Y   94 (127)
T 2jjs_C           16 NDTVVIPCFVTNMEAQNTTEVYVKWKF-KGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNY   94 (127)
T ss_dssp             CSEEEECCBBSSCCCSSGGGEEEEEEE-TTEEEEEEEGGGTEEECCGGGTTCBCCGGGGGGTBCCEEEEHHHHHTSCEEE
T ss_pred             CCCEEEEEEeCCcCCCCcceEEEEEEE-CCeEeEeeCCceeeccccccccceEechhhhccCcEEEEEcccccccCCcEE
Confidence            457889998774333     5799999 45554432221 11 00   0111222221  3678999999998 699999


Q ss_pred             EEEEEeCCCceEeEEEEEEcC
Q psy16425         69 MCQVNTDPMKSQVGYLEVVVP   89 (163)
Q Consensus        69 ~C~~~~~~~~~~~~~l~v~~~   89 (163)
                      +|++..... .....+++.+.
T Consensus        95 tC~v~~~~~-~~~~~i~Lkv~  114 (127)
T 2jjs_C           95 TCEVTELTR-EGETIIELKYR  114 (127)
T ss_dssp             EEEEEETTE-EEEEEEEEEEC
T ss_pred             EEEEEeCCc-eEEEEEEEEEE
Confidence            999965533 33445555543

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.65  E-value=9.1e-08  Score=57.44  Aligned_cols=72  Identities=17%  Similarity=0.247  Sum_probs=47.4

Q ss_pred             ceeEEEeeeeccC-----CCEEEEEEcCC-c-e--EEeee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMA-----ESTVAWLRVDT-Q-T--ILTIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~-----~~~i~W~k~~~-~-~--~~~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|...+.+     .+.|.||+... . +  +.... .......+|+.... ...+++|.|.+++++|+|.|.|.+
T Consensus        17 ~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~   95 (113)
T 1dlf_L           17 NQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSG-SGTDFTLKISRVEAEDLGVYFCSQ   95 (113)
T ss_dssp             CCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEc-cCCEEEEEECCCChHHCEEEEEEE
Confidence            4688888876655     47899998642 1 1  11111 11111246777654 335778999999999999999999


Q ss_pred             EeC
Q psy16425         73 NTD   75 (163)
Q Consensus        73 ~~~   75 (163)
                      .+.
T Consensus        96 ~~~   98 (113)
T 1dlf_L           96 STH   98 (113)
T ss_dssp             CSS
T ss_pred             ecC
Confidence            543

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.65  E-value=1.2e-06  Score=54.21  Aligned_cols=73  Identities=15%  Similarity=0.278  Sum_probs=49.1

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcC-Cc-e--EEe-eee-eEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVD-TQ-T--ILT-IQT-HVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~-~~-~--~~~-~~~-~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...... ...+.||+.. +. .  +.. ... ......+|+....+ ....++|.|.+++.+|+|.|.|.+..
T Consensus        25 ~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~  104 (134)
T 3bik_B           25 ANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAIS  104 (134)
T ss_dssp             SCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEe
Confidence            4678888876543 4789999963 21 1  111 111 12234678887643 34678999999999999999999865


Q ss_pred             C
Q psy16425         75 D   75 (163)
Q Consensus        75 ~   75 (163)
                      .
T Consensus       105 ~  105 (134)
T 3bik_B          105 L  105 (134)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=98.65  E-value=1.1e-06  Score=53.01  Aligned_cols=73  Identities=15%  Similarity=0.284  Sum_probs=49.6

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcCC-c-e--EEee-ee-eEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVDT-Q-T--ILTI-QT-HVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~~-~-~--~~~~-~~-~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...... ...+.||+... . +  +... .. ......+|+....+ ....++|.|.+++.+|+|.|.|.+.+
T Consensus        15 ~~vtL~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   94 (117)
T 3bp6_A           15 ANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAIS   94 (117)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEeEeecCCCCCEEEEEEeCCCCCceEEEEECCCCccccccCcEEEEEcCCCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            4678888876543 57899999632 1 1  1111 11 12234678887653 35678999999999999999999865


Q ss_pred             C
Q psy16425         75 D   75 (163)
Q Consensus        75 ~   75 (163)
                      .
T Consensus        95 ~   95 (117)
T 3bp6_A           95 L   95 (117)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.65  E-value=1.6e-07  Score=61.58  Aligned_cols=64  Identities=9%  Similarity=0.115  Sum_probs=39.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|...+. .+.+.|++ ++..+.....       ++.....+.....|.|.+++.+|+|.|+|.+.+.
T Consensus       116 ~~v~L~C~~~~~-~~~v~W~k-~g~~~~~~~~-------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~  179 (198)
T 1ugn_A          116 GNVTLQCDSQVA-FDGFILCK-EGEDEHPQCL-------NSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS  179 (198)
T ss_dssp             CCEEEEEECSSC-CSEEEEEE-C------CEE-------EC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CcEEEEEecCCC-CcEEEEEE-CCCccCCccc-------cccccCCCcceeEEEecccCcccCeEEEEEEEeC
Confidence            467888988877 78999999 4544321110       0111111112348999999999999999999765

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.64  E-value=2.9e-08  Score=65.89  Aligned_cols=61  Identities=16%  Similarity=0.389  Sum_probs=41.5

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEccc-CCCCCeEEEEEEEeCCC
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREV-RESDRGWYMCQVNTDPM   77 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~~~~~~~   77 (163)
                      .+.|.|.  +.|.+.|.|++ ++..+...     .....+. ...+    +|.|.++ +.+|+|.|+|.+.|...
T Consensus       130 ~v~L~C~--g~p~p~i~W~k-~~~~l~~~-----~~~~~~~-~~~~----~L~I~~v~~~~D~G~Y~C~A~N~~g  191 (204)
T 1sy6_A          130 TVILTCP--QYPGSEILWQH-NDKNIGGD-----EDDKNIG-SDED----HLSLKEFSELEQSGYYVCYPRGSKP  191 (204)
T ss_dssp             EEEEECS--CCCSSCEEEEE-TTEEESCC-----TTCTTEE-EETT----EEEETTCCHHHHCEEEEEEETTSCG
T ss_pred             cEEEEcC--CCCCCceEEEE-CCEECCCc-----cCCceEe-cCCC----EEEEeeCCccccCEEEEEEeccCCC
Confidence            5778887  67888999999 55544211     0011121 1222    8999999 99999999999977643

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.64  E-value=8e-08  Score=58.95  Aligned_cols=70  Identities=13%  Similarity=0.252  Sum_probs=44.1

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCce---EEeeeeeEEecCCeEEEEeC----CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQT---ILTIQTHVITKNHRIGVTHS----ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~---~~~~~~~~~~~~~r~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|...+. +.+.|.||+..+..   +.....   ....|+.....    ....++|.|.+++.+|+|.|.|.+.+
T Consensus        19 ~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~---~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   95 (127)
T 2jju_A           19 ESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKE---GHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFR   95 (127)
T ss_dssp             SCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSS---SCCTTEEEC-------CCBCCEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCC---CccCcEEeeEeeeecCCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            468888887654 56789999965321   111100   01134443211    12356899999999999999999965


Q ss_pred             C
Q psy16425         75 D   75 (163)
Q Consensus        75 ~   75 (163)
                      .
T Consensus        96 ~   96 (127)
T 2jju_A           96 K   96 (127)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.64  E-value=1.8e-07  Score=56.41  Aligned_cols=72  Identities=19%  Similarity=0.325  Sum_probs=48.1

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCC-ce---EEee-eeeEE---ecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDT-QT---ILTI-QTHVI---TKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~-~~---~~~~-~~~~~---~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .++.|.|..... +...|.||+... ..   +... .....   ...+|+.+..+ ..++++|.|.+++.+|+|.|.|.+
T Consensus        16 ~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~   95 (116)
T 1tvd_A           16 SEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAF   95 (116)
T ss_dssp             CCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccCChHHCEEEEEEE
Confidence            468888886544 567899998642 11   1111 11111   12577877653 346789999999999999999999


Q ss_pred             Ee
Q psy16425         73 NT   74 (163)
Q Consensus        73 ~~   74 (163)
                      .+
T Consensus        96 ~~   97 (116)
T 1tvd_A           96 TL   97 (116)
T ss_dssp             EC
T ss_pred             eC
Confidence            65

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.64  E-value=2.2e-07  Score=59.81  Aligned_cols=67  Identities=15%  Similarity=0.223  Sum_probs=45.6

Q ss_pred             ceeEEEeeeeccCC-CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ce
Q psy16425          3 ARMLIEIGEMLMAE-STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~   79 (163)
                      ..+.|.|...+.++ +.+.|++ ++..+...             ...    ..|.|.+++.+|+|.|+|.+.|...  .+
T Consensus       104 ~~~~l~C~~~~~~~~~~~~W~k-~g~~~~~~-------------~~~----~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s  165 (175)
T 1fnl_A          104 DPIHLRCHSWKNTALHKVTYLQ-NGKDRKYF-------------HHN----SDFHIPKATLKDSGSYFCRGLVGSKNVSS  165 (175)
T ss_dssp             CCEEEEEEECTTCCCEEEEEEE-TTEEEEEE-------------EEC----CCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCEEEEEEcCCCCCceEEEEEE-CCeEccCC-------------CCC----CEEEEcccChhhCeEEEEEEEcCCCCccC
Confidence            35788888776655 5999999 55554211             011    2799999999999999999987532  23


Q ss_pred             EeEEEEEE
Q psy16425         80 QVGYLEVV   87 (163)
Q Consensus        80 ~~~~l~v~   87 (163)
                      ..+.|.|.
T Consensus       166 ~~~~l~V~  173 (175)
T 1fnl_A          166 ETVNITIT  173 (175)
T ss_dssp             CCEEEEEE
T ss_pred             ccEEEEEe
Confidence            34445544

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=7.2e-08  Score=58.22  Aligned_cols=57  Identities=16%  Similarity=0.327  Sum_probs=46.0

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .+...    ....|.|.+++.+|.+
T Consensus        32 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~-~~~~~~~~~~~~~L~i~~~~~~D~G   92 (118)
T 2e7c_A           32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSDFDTVFFVRQAARSDSG   92 (118)
T ss_dssp             SCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCC-SSCEEEECSSEEEEEESSCCTTTCE
T ss_pred             CCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCC-CcEEEEECCCeEEEEECCCChhcCE
Confidence            467788999999999999999999999999988752 22222    2355999999999876

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.64  E-value=4.1e-07  Score=60.12  Aligned_cols=63  Identities=8%  Similarity=0.044  Sum_probs=41.7

Q ss_pred             EEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          6 LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ++.|...+.|++.+.|++. +..............+.+...      ..|.|.++..+|+|.|+|.+.|.
T Consensus       141 ~~c~~~~~~P~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d~g~YtC~a~N~  203 (225)
T 4fmk_A          141 ARCVSTGGRPPARITWISS-LGGEAKDTQEPGIQAGTVTII------SRYSLVPVGRADGVKVTCRVEHE  203 (225)
T ss_dssp             EEEEEEEEBSCCEEEEECS-SCCEEEEEEEECSSTTCEEEE------EEEEECCCGGGTTCEEEEEEECT
T ss_pred             eeeeecCCCCCCEEEEEEC-CccccCCcceEEecCCCEEEE------EEEEEeeCCHHHCCEEEEEEEcC
Confidence            4445566788899999984 433333222222333333322      26999999999999999999876

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.63  E-value=8.3e-08  Score=56.84  Aligned_cols=66  Identities=8%  Similarity=0.144  Sum_probs=49.6

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec-CCceE-Eec---eEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ-GNGQE-DFP---FFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~-~~~---~l~i~~v~~~~~~  156 (163)
                      +|.+...+. ....+.+|+++.|.|.+ +.|.|.+.|++++..+... .+... ..+   .|.|.+++.+|++
T Consensus        15 ~p~f~~~~~-~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   85 (104)
T 1pd6_A           15 STAFQKKLE-PAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDA   85 (104)
T ss_dssp             TSSCSEECC-SEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCE
T ss_pred             CCEEEEcCC-CcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCE
Confidence            444444332 24778999999999999 7899999999999988665 34332 234   8999999998875

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.63  E-value=8.8e-08  Score=64.14  Aligned_cols=75  Identities=11%  Similarity=0.155  Sum_probs=41.5

Q ss_pred             eeEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceE-EEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          4 RMLIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAW-YLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         4 ~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      .+.+.|...+ .|.|.|.|++.++..+......         ......+.+ .+.+.+++.+|+|.|+|.+.|. +....
T Consensus       135 ~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~---------~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~  205 (226)
T 4f80_A          135 GIHLECRSTGWYPQPQIQWSNNKGENIPTVEAP---------VVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEK  205 (226)
T ss_dssp             EEEEEEEEEEEBSCCEEEEECTTSCBCCCEECC---------CEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEE
T ss_pred             ceeeEEEeccCCCCCEEEEEECCceEcCCCceE---------EEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEE
Confidence            5677788776 5999999999655544221111         111111111 2345567889999999999876 44444


Q ss_pred             eEEEEEE
Q psy16425         81 VGYLEVV   87 (163)
Q Consensus        81 ~~~l~v~   87 (163)
                      .+.|.|.
T Consensus       206 ~~~v~v~  212 (226)
T 4f80_A          206 TASISIA  212 (226)
T ss_dssp             EEEECCC
T ss_pred             EEEEEEC
Confidence            4445443

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=98.63  E-value=5.7e-07  Score=54.13  Aligned_cols=73  Identities=15%  Similarity=0.263  Sum_probs=46.9

Q ss_pred             ceeEEEeeee--ccCCCEEEEEEcC-Cc-----eEE-eeee-eEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEE
Q psy16425          3 ARMLIEIGEM--LMAESTVAWLRVD-TQ-----TIL-TIQT-HVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         3 ~~~~~~~~~~--~~~~~~i~W~k~~-~~-----~~~-~~~~-~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      ..+.|.|...  ......+.||+.. ..     .+. ..+. ......+|+.+... ..++++|.|.+++.+|+|.|.|.
T Consensus        12 ~~vtL~C~~~~~~~~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~   91 (116)
T 3bia_X           12 QPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCR   91 (116)
T ss_dssp             SCEEECCBCTTCCTTTCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSCGGGTBCCEEECSCCGGGCEEEEEE
T ss_pred             CcEEEEEEeeCCCCCeEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEeccCCCCEEEEEEccCChhHCEEEEEE
Confidence            4678888765  2234569999965 11     122 1111 12233456665543 24678999999999999999999


Q ss_pred             EEeC
Q psy16425         72 VNTD   75 (163)
Q Consensus        72 ~~~~   75 (163)
                      +...
T Consensus        92 v~~~   95 (116)
T 3bia_X           92 IEVP   95 (116)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            9654

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=98.63  E-value=8.1e-07  Score=53.99  Aligned_cols=71  Identities=17%  Similarity=0.371  Sum_probs=47.8

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCC-c-e--EEeeee------eEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDT-Q-T--ILTIQT------HVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~-~-~--~~~~~~------~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.  ....|.||+... . +  +.....      ......+|+.+..+. .++++|.|.+++++|+|.|.
T Consensus        18 ~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~   97 (121)
T 2xt1_B           18 GSLRLSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQMNDLKPEDTAMYY   97 (121)
T ss_dssp             CCEEEEEEEESSSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEEecCeeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEE
Confidence            468888887643  367899999641 1 1  211110      011235688877653 46789999999999999999


Q ss_pred             EEEE
Q psy16425         70 CQVN   73 (163)
Q Consensus        70 C~~~   73 (163)
                      |.+.
T Consensus        98 C~~~  101 (121)
T 2xt1_B           98 CKAS  101 (121)
T ss_dssp             EEET
T ss_pred             EEEE
Confidence            9984

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.63  E-value=2.6e-07  Score=55.66  Aligned_cols=72  Identities=8%  Similarity=0.140  Sum_probs=48.0

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCC-ce---EEeee--eeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDT-QT---ILTIQ--THVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~-~~---~~~~~--~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|..... +...+.||+... ..   +....  .......+|+.+.. ...++++|.|.+++++|+|.|.|.+.+
T Consensus        16 ~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   95 (116)
T 1fo0_A           16 TTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRG   95 (116)
T ss_dssp             CCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEc
Confidence            468888887666 566899999642 21   11111  11111246777753 334678999999999999999999964

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=2.6e-08  Score=59.34  Aligned_cols=66  Identities=20%  Similarity=0.470  Sum_probs=50.5

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-----EeceEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~  156 (163)
                      +|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+........     ....|.|.+++.+|.+
T Consensus         9 ~P~i~~~~--~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   79 (110)
T 2dm3_A            9 RPHFLQAP--GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAG   79 (110)
T ss_dssp             CCEEEECC--CEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCS
T ss_pred             CCcEEeCC--CcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCE
Confidence            45555433  367788999999999999999999999999987755443322     1247999999999876

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.62  E-value=4.4e-09  Score=64.07  Aligned_cols=73  Identities=21%  Similarity=0.310  Sum_probs=54.9

Q ss_pred             EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCe-EEEEECCeEEEe--cCCceE----E----eceEEEE
Q psy16425         80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPN-ITWRREGGELIA--QGNGQE----D----FPFFKRT  148 (163)
Q Consensus        80 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~~--~~~~~~----~----~~~l~i~  148 (163)
                      ..+.|.|..+|.+.. +  ....+.+|+.+.|.|.+.|.|.|. +.|++++..+..  ..+...    .    ...|.|.
T Consensus         5 ~~~~l~V~~~P~i~~-~--~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~   81 (122)
T 2cry_A            5 SSGTLTVNGPPIISS-T--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTIS   81 (122)
T ss_dssp             CCCCCCCCSSCCEEE-E--CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECT
T ss_pred             eEEEEEEecCCCccC-C--CeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEc
Confidence            344567777887766 3  355688999999999999999997 999999988753  222222    1    3479999


Q ss_pred             cchhhhH
Q psy16425        149 KKKKKKK  155 (163)
Q Consensus       149 ~v~~~~~  155 (163)
                      +++.+|.
T Consensus        82 ~v~~~D~   88 (122)
T 2cry_A           82 NIVRADF   88 (122)
T ss_dssp             TCCHHHH
T ss_pred             CCChhhC
Confidence            9999987

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.62  E-value=4.6e-07  Score=60.19  Aligned_cols=79  Identities=11%  Similarity=0.167  Sum_probs=47.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEe--cCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVIT--KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~   79 (163)
                      ..+.|.|...+.|.|.|.|++.++..+.........  ..+.+.         ...+..++..|+|.|+|.+.|. +...
T Consensus       132 ~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~l~v~~~d~g~Y~C~a~n~~g~~~  202 (222)
T 3sbw_C          132 SEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFN---------VTSTLRINTTTNEIFYCTFRRLDPEEN  202 (222)
T ss_dssp             TEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEE---------EEEEEEEECCTTCEEEEEEEETTTTEE
T ss_pred             CcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEE---------EEEEEEEeccCCcEEEEEEEeCcccee
Confidence            468889999999999999999545544221111011  111111         1222345679999999999876 4455


Q ss_pred             EeEEEEEEcCC
Q psy16425         80 QVGYLEVVVPP   90 (163)
Q Consensus        80 ~~~~l~v~~~p   90 (163)
                      ..+.|.|...|
T Consensus       203 ~~~~l~v~~~p  213 (222)
T 3sbw_C          203 HTAELVIPELP  213 (222)
T ss_dssp             EEEEEECCCC-
T ss_pred             eEEEEEecCCc
Confidence            55666665544

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.62  E-value=1.9e-07  Score=55.60  Aligned_cols=68  Identities=24%  Similarity=0.293  Sum_probs=46.1

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcC-CceEEeeeeeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVD-TQTILTIQTHVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~-~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...+.  +.+.|.||+.. +....    ......+|+.... .....++|.|.+++++|+|.|.|.+.+
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           16 ESLTINCVLRDTACALDSTNWYRTKLGSTKE----QTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             CCEEEEEEECCSSEEEEEEEEEEEETTCCCE----EECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEeEeCCCcCCCCEEEEEEcCCCCCcE----EEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            467888887654  36789999953 22110    0112345666543 234678999999999999999999965

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.62  E-value=2.5e-07  Score=61.69  Aligned_cols=84  Identities=18%  Similarity=0.232  Sum_probs=53.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEc---CCceEEeeeeeEEecCCeEEEEe----CCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRV---DTQTILTIQTHVITKNHRIGVTH----SETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~---~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.|.+.+.|++.   ++..+....      ........    ......+|.|.+++.+|+|.|+|.+.|.
T Consensus       134 ~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  207 (231)
T 3ojm_B          134 GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDG------LPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNY  207 (231)
T ss_dssp             CCEEEECCEECSSCCEEEEEEECCBTTBSBCTTS------CBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEET
T ss_pred             CcEEEEEEEecCCCCEEEEEECCCCCCccccCCC------cceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEec
Confidence            3578889999999999999993   233221100      00111110    0112347999999999999999999776


Q ss_pred             -CCceEeEEEEEEcCCcc
Q psy16425         76 -PMKSQVGYLEVVVPPDI   92 (163)
Q Consensus        76 -~~~~~~~~l~v~~~p~~   92 (163)
                       +.....+.|.|..+|..
T Consensus       208 ~g~~~~~~~l~V~~~p~~  225 (231)
T 3ojm_B          208 IGQANQSAWLTVLPKQQA  225 (231)
T ss_dssp             TEEEEEEEEEEEECCC--
T ss_pred             cceEeeEEEEEEecCCCC
Confidence             44456667777776644

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.61  E-value=2.6e-07  Score=70.43  Aligned_cols=73  Identities=16%  Similarity=0.300  Sum_probs=54.2

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVG   82 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~   82 (163)
                      .+.+.|...+.|.|.|.|++ ++..+        ....++.....+ .+.+|.|.++...|+|.|+|.+.|. |..+..+
T Consensus       499 ~~~~~~~v~g~P~P~v~W~k-~~~el--------~~s~~~~i~~~~-~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v  568 (573)
T 3uto_A          499 SANFYCRVIASSPPVVTWHK-DDREL--------KQSVKYMKRYNG-NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV  568 (573)
T ss_dssp             CEEEEEEEECSSCCEEEEEE-TTEEC--------CSSSSEEEEEET-TEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEEEEEEccCCCeEEEEE-CCEEc--------ccCCcEEEEEcC-CEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEE
Confidence            56788888999999999999 55554        334555555443 4568999999999999999999776 4444545


Q ss_pred             EEEE
Q psy16425         83 YLEV   86 (163)
Q Consensus        83 ~l~v   86 (163)
                      .|.|
T Consensus       569 ~l~V  572 (573)
T 3uto_A          569 FLNV  572 (573)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.61  E-value=2.4e-07  Score=56.60  Aligned_cols=72  Identities=17%  Similarity=0.190  Sum_probs=47.5

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-Cce---EEeee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQT---ILTIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~---~~~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|.....+  ...+.||+.. +..   +.... .......+|+.... ...+++|.|.+++.+|+|.|.|.+.+.
T Consensus        16 ~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~-~~~~~sL~I~~l~~~DsG~Y~C~~~~~   94 (123)
T 3t0v_A           16 QKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSK-SGTSASLAISGLRSEDEADYYCLSWDD   94 (123)
T ss_dssp             CCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEc-cCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            4678888876543  4789999963 111   11111 11111246777664 346789999999999999999999654

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=98.61  E-value=4.5e-07  Score=55.16  Aligned_cols=72  Identities=13%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c---eEEeeeee----EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q---TILTIQTH----VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~---~~~~~~~~----~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.. ......|.||+... .   .+......    .....+|+.+.....++++|.|.+++++|+|.|.|.+.+
T Consensus        17 ~~vtL~C~~-~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~   95 (121)
T 2oi9_C           17 EKVTLSCNQ-TNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGG   95 (121)
T ss_dssp             CCEEEEEEE-SSCCSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEECCSSSEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CcEEEEEEe-cCCCCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEcCCCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            467888874 34567899999642 1   12111110    112256888776445678999999999999999999954


Q ss_pred             C
Q psy16425         75 D   75 (163)
Q Consensus        75 ~   75 (163)
                      .
T Consensus        96 ~   96 (121)
T 2oi9_C           96 G   96 (121)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.61  E-value=9.2e-09  Score=61.19  Aligned_cols=66  Identities=26%  Similarity=0.486  Sum_probs=50.4

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~  156 (163)
                      .|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+....+...    ....|.|.+++.+|.+
T Consensus        14 ~~~i~~~p--~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G   83 (106)
T 1nct_A           14 AARILTKP--RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEG   83 (106)
T ss_dssp             CCEEEECC--CCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCS
T ss_pred             CCEEEECC--CCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCE
Confidence            34444433  367788999999999999999999999999887654444332    2468999999998875

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=98.60  E-value=4.6e-07  Score=54.52  Aligned_cols=72  Identities=17%  Similarity=0.340  Sum_probs=48.2

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCC--ce--EEeeee---eEEe--cCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDT--QT--ILTIQT---HVIT--KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~--~~--~~~~~~---~~~~--~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|..... +...+.||+...  .+  +.....   ....  ..+|+.... ..++++|.|.+++++|+|.|.|.+
T Consensus        17 ~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~L~I~~~~~~Dsg~Y~C~~   95 (115)
T 2otu_A           17 ASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-SGADRYLSISNIQPEDEAIYICGV   95 (115)
T ss_dssp             CCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEc-cCCEEEEEECCCChhHCEEEEEEE
Confidence            468888887654 567899998631  11  211110   1111  246777765 346789999999999999999999


Q ss_pred             EeC
Q psy16425         73 NTD   75 (163)
Q Consensus        73 ~~~   75 (163)
                      .+.
T Consensus        96 ~~~   98 (115)
T 2otu_A           96 GDT   98 (115)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            654

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=98.59  E-value=3.9e-07  Score=55.17  Aligned_cols=73  Identities=21%  Similarity=0.253  Sum_probs=46.8

Q ss_pred             cceeEEEeeeeccCC---CEEEEEEcCCc-e--EEee--eeeE---EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEE
Q psy16425          2 AARMLIEIGEMLMAE---STVAWLRVDTQ-T--ILTI--QTHV---ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~---~~i~W~k~~~~-~--~~~~--~~~~---~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      ..++.|.|.......   ..|.||+..+. .  +...  +...   ....+|+.+.....++++|.|.+++.+|+|.|.|
T Consensus        16 G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   95 (119)
T 2pnd_A           16 KGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTC   95 (119)
T ss_dssp             TSCEEECCBCCCCTTCEEEEEEEEEEETTEEEEEEEEETTEEECCSGGGTTTEEECCSSTTBCCEEESSCCGGGCEEEEE
T ss_pred             CCcEEEEEEEcCCCCCCceEEEEEEeCCCCceEEEEEcCCCceeecccccCcEEEccCCCCCEEEEEccCCcccCEEEEE
Confidence            346888887654322   25799985322 1  1111  1111   1134677776555577899999999999999999


Q ss_pred             EEEe
Q psy16425         71 QVNT   74 (163)
Q Consensus        71 ~~~~   74 (163)
                      .+..
T Consensus        96 ~v~~   99 (119)
T 2pnd_A           96 EVTW   99 (119)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9954

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.59  E-value=1.8e-07  Score=56.21  Aligned_cols=68  Identities=21%  Similarity=0.276  Sum_probs=46.5

Q ss_pred             ceeEEEeeeeccC--CCEEEEEEcC-CceEEeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMA--ESTVAWLRVD-TQTILTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~--~~~i~W~k~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...+.+  .+.|.||+.. +....    ..+...+|+..... ....++|.|.+++++|+|.|.|.+.+
T Consensus        16 ~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~----~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (113)
T 1sq2_N           16 ESLTINCVLRDASYALGSTCWYRKKSGEGNE----ESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   87 (113)
T ss_dssp             CCEEEEEEECSCSSCCCCEEEEEEETTSCCC----EECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             CCEEEEEEECCCcCCCCEEEEEEeCCCCCce----EeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            4688888876554  5789999963 22111    01123456665433 34678999999999999999999965

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=1.2e-07  Score=55.76  Aligned_cols=65  Identities=20%  Similarity=0.298  Sum_probs=49.4

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-Eec---eEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFP---FFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~---~l~i~~v~~~~~~  156 (163)
                      +|.+...+  ....+.+|+++.|.|. .+.|.|.+.|++++..+....+... ..+   .|.|.+++.+|.+
T Consensus         8 pp~~~~~~--~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G   76 (103)
T 2dku_A            8 ANCFTEEL--TNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSD   76 (103)
T ss_dssp             CCCCSSCC--CCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCS
T ss_pred             CCEeEecC--CcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCE
Confidence            34444433  4678899999999999 4889999999999988765544443 233   7999999999876

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.59  E-value=6.5e-07  Score=54.37  Aligned_cols=73  Identities=12%  Similarity=0.314  Sum_probs=48.7

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCC-c-e--EEeeee---eEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDT-Q-T--ILTIQT---HVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~-~-~--~~~~~~---~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      ..+.|.|...+.  ....+.||+... . +  +.....   ...  ...+|+.+..+. .++++|.|.+++++|+|.|.|
T Consensus        16 ~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C   95 (121)
T 1kxv_C           16 GSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYYC   95 (121)
T ss_dssp             CCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCEEEEE
T ss_pred             CcEEEEEEecCCCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHHCEEEEE
Confidence            468888887643  357899998631 1 1  111110   011  124688877653 467899999999999999999


Q ss_pred             EEEeC
Q psy16425         71 QVNTD   75 (163)
Q Consensus        71 ~~~~~   75 (163)
                      .+.+.
T Consensus        96 ~~~~~  100 (121)
T 1kxv_C           96 KPSLR  100 (121)
T ss_dssp             EEEES
T ss_pred             EEEec
Confidence            99653

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.59  E-value=8.1e-08  Score=62.67  Aligned_cols=52  Identities=23%  Similarity=0.429  Sum_probs=38.6

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .+.|.|..   |.|.|.|+| ++..+..        ..+        ....|.|.+++.+|+|.|+|.+.|.
T Consensus       124 ~v~l~C~~---p~p~i~W~k-~g~~i~~--------~~~--------~~~~L~i~~v~~~D~G~Y~C~a~N~  175 (186)
T 1jbj_A          124 SVLLTCGL---TDKTIKWLK-DGSIISP--------LNA--------TKNTWNLGNNAKDPRGTYQCQGAKE  175 (186)
T ss_dssp             EEEEECSS---SCSCEEEEE-TTEECCC--------SSC--------CSSCCEEEETTSCCEEEEEEEESSC
T ss_pred             eEEEEeeC---CCCeEEEEE-CCEECcc--------cCC--------CcceEEECCCCcCcCEEEEEEEEcC
Confidence            57777876   788999999 5655421        010        1227999999999999999999665

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.58  E-value=2.4e-07  Score=56.85  Aligned_cols=69  Identities=23%  Similarity=0.264  Sum_probs=46.8

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcC-CceEEeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVD-TQTILTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+.  +.+.+.||+.. +...    .......+|+..... ...+++|.|.+++++|+|.|.|.+.+.
T Consensus        16 ~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~----~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~   88 (126)
T 3moq_A           16 ESLTINCVLRDASFELKDTGWYRTKLGSTN----EQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYV   88 (126)
T ss_dssp             CCEEEEEEEESCSSCCCEEEEEEEETTCCC----CEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CCEEEEEEeecCccCCceEEEEEeCCCCCc----eEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEEEc
Confidence            467888887654  56789999952 1111    011123467765543 346789999999999999999999543

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.57  E-value=7.5e-08  Score=57.01  Aligned_cols=57  Identities=12%  Similarity=0.233  Sum_probs=46.3

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-Ee---ceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DF---PFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~---~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+++.|.|.+.+.|.+ +.|++++..+....+... ..   ..|.|.+++.+|.+
T Consensus        16 ~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   76 (106)
T 2dlt_A           16 ADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEG   76 (106)
T ss_dssp             CCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCS
T ss_pred             CCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCE
Confidence            36778999999999999998877 999999988766555443 22   47999999999876

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.57  E-value=1.4e-07  Score=55.48  Aligned_cols=57  Identities=21%  Similarity=0.355  Sum_probs=45.7

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc--eE--E--eceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG--QE--D--FPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~--~~--~--~~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+++.|.|.+.+ |.+.+.|++++..+......  ..  .  ...|.|.+++.+|.+
T Consensus        15 ~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G   77 (103)
T 1x44_A           15 EDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAA   77 (103)
T ss_dssp             CCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCS
T ss_pred             CCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCE
Confidence            3577889999999999987 77999999999988666522  32  1  257999999999876

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.57  E-value=1.6e-07  Score=57.52  Aligned_cols=53  Identities=13%  Similarity=0.202  Sum_probs=42.9

Q ss_pred             CCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-----------EEeceEEEEcchhhhHhh
Q psy16425        105 EGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-----------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       105 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-----------~~~~~l~i~~v~~~~~~~  157 (163)
                      .+..+.|.|.+.|+|.|.|+|++||.++.......           ...+.|.|.+++..|++.
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   77 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN   77 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEE
Confidence            56789999999999999999999999886654421           124679999999998763

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.56  E-value=1.3e-07  Score=54.79  Aligned_cols=55  Identities=15%  Similarity=0.297  Sum_probs=46.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+.+  .|.+.|++++..+....+....++.|.|.+++.+|++
T Consensus        10 ~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G   64 (95)
T 4hwu_A           10 AYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSG   64 (95)
T ss_dssp             EEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCE
T ss_pred             cEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCE
Confidence            566889999999999987  5799999999988766665667789999999999876

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=98.56  E-value=8.6e-07  Score=53.40  Aligned_cols=72  Identities=15%  Similarity=0.269  Sum_probs=48.2

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCC-c-e--EEeeee----eE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDT-Q-T--ILTIQT----HV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~-~-~--~~~~~~----~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.  ....|.||+... . +  +.....    ..  ....+|+.+..+. .++++|.|.+++++|+|.|.
T Consensus        16 ~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~   95 (117)
T 2yc1_A           16 GSLRLSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQMNSLRAEDTAVYY   95 (117)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CeEEEEEEecCcccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEE
Confidence            468888887643  257899999642 2 1  111110    01  1134688877653 56789999999999999999


Q ss_pred             EEEEe
Q psy16425         70 CQVNT   74 (163)
Q Consensus        70 C~~~~   74 (163)
                      |.+.+
T Consensus        96 C~~~~  100 (117)
T 2yc1_A           96 CARGG  100 (117)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99864

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.56  E-value=1.3e-07  Score=62.99  Aligned_cols=67  Identities=12%  Similarity=0.189  Sum_probs=48.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~   80 (163)
                      ..+.|.|...+.|.+.+.|++ ++..+.        ...          ...|.|.+++.+|+|.|+|.+.|...  .+.
T Consensus       134 ~~v~L~C~~~g~p~~~v~W~~-~~~~~~--------~~~----------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~  194 (218)
T 3k0w_A          134 STLVLQCVAVGSPIPHYQWFK-NELPLT--------HET----------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK  194 (218)
T ss_dssp             CCEEEECEEEBSSCCEEEEEE-TTEECT--------TCC----------SSEEEESSCCGGGCEEEEEEEECSSCEEECC
T ss_pred             CcEEEEEEecccCCCeEEEEE-CCEECC--------CCC----------CCEEEEeecChhcCEEEEEEEEcCCCCceee
Confidence            357888999999999999999 554431        111          12799999999999999999987533  233


Q ss_pred             eEEEEEEc
Q psy16425         81 VGYLEVVV   88 (163)
Q Consensus        81 ~~~l~v~~   88 (163)
                      .+.|.|..
T Consensus       195 ~~~l~V~~  202 (218)
T 3k0w_A          195 KVEIIIDE  202 (218)
T ss_dssp             CEEEEECC
T ss_pred             eEEEEEeC
Confidence            44555544

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.56  E-value=7e-07  Score=53.48  Aligned_cols=70  Identities=11%  Similarity=0.117  Sum_probs=45.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---EEee-ee---eEEec-CCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---ILTI-QT---HVITK-NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~~~~-~~---~~~~~-~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.....+...+.||+... ..   +... ..   ..... ++|+....... + +|.|.+++++|+|.|.|.+.
T Consensus        17 ~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~-~-~L~I~~~~~~Dsg~Y~C~~~   94 (112)
T 1fo0_B           17 QAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD-T-ELRLQVANMSQGRTLYCTCS   94 (112)
T ss_dssp             CCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEET-T-EEEEEEESCCSCEEEEEEEE
T ss_pred             CcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCC-C-eEEEcCCCHhHCEEEEEEEE
Confidence            468888887666778899999642 21   1111 10   00112 26777665432 3 89999999999999999995


Q ss_pred             e
Q psy16425         74 T   74 (163)
Q Consensus        74 ~   74 (163)
                      +
T Consensus        95 ~   95 (112)
T 1fo0_B           95 A   95 (112)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.55  E-value=1.4e-07  Score=54.88  Aligned_cols=57  Identities=18%  Similarity=0.309  Sum_probs=44.4

Q ss_pred             CcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+++.|.|.+. +.|.|.+.|++++...... .....++.|.|.+++.+|.+
T Consensus        18 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~L~i~~v~~~D~G   75 (98)
T 1gl4_B           18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-RAMDFNGILTIRNVQPSDAG   75 (98)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT-TEEEETTEEEECSCCGGGCE
T ss_pred             CCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCc-eeecCCCEEEEeCCChhhCE
Confidence            356788999999999998 6899999999975443222 22345678999999999875

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=3.2e-08  Score=57.98  Aligned_cols=56  Identities=14%  Similarity=0.278  Sum_probs=45.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+.+.|.|.+.+.| |.+.|++++..+.........+..|.|.+++.+|.+
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G   67 (99)
T 2cr3_A           12 SFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSG   67 (99)
T ss_dssp             ECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCE
T ss_pred             CeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCE
Confidence            44577899999999999977 799999999887655555555778999999998875

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=9.4e-08  Score=56.31  Aligned_cols=55  Identities=18%  Similarity=0.233  Sum_probs=45.2

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--E--eceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--D--FPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~--~~~l~i~~v~~~~~~  156 (163)
                      ..+.+|+++.|.|.+.+.|.| +.|++++..+........  .  ...|.|.+++.+|.+
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G   78 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSG   78 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCE
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCE
Confidence            678999999999999999988 999999998866555443  1  246999999999875

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.54  E-value=1.4e-07  Score=55.17  Aligned_cols=66  Identities=11%  Similarity=0.149  Sum_probs=48.6

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--Ee--ceEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DF--PFFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~--~~l~i~~v~~~~~~  156 (163)
                      +|.+...+. ....+.+|+++.|.|.+. .|.|.+.|++++..+........  .+  ..|.|.+++.+|.+
T Consensus         7 ~p~~~~~~~-~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G   76 (100)
T 2yuv_A            7 GAAFAKILD-PAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDS   76 (100)
T ss_dssp             SCCEEECCC-SCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCC
T ss_pred             CCeEEecCC-CccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCE
Confidence            444544332 235788999999999998 69999999999988765544432  21  36999999999876

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.54  E-value=3.7e-08  Score=55.71  Aligned_cols=51  Identities=16%  Similarity=0.339  Sum_probs=38.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEccc-CCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREV-RESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...+.|.  |+|+| ++..+..        .      .    +.+|.|.++ +.+|+|.|+|.+.+
T Consensus        15 ~~v~L~C~~~g~P~--i~W~k-dg~~l~~--------~------~----~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           15 TSVELTCPLDSDEN--LKWEK-NGQELPQ--------K------H----DKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             TEEEEECSSCCCSS--CEEEE-TTEECTT--------C------C----SSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             CeEEEEEECCCCCc--EEEEE-CCEECcC--------C------C----CCEEEECccCccCcCEEEEEEEcc
Confidence            36889999988884  99999 5554411        0      1    127999996 78999999999853

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=98.54  E-value=1.1e-06  Score=53.21  Aligned_cols=73  Identities=14%  Similarity=0.310  Sum_probs=48.1

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCC-c-e--EEeee---ee-EE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDT-Q-T--ILTIQ---TH-VI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~-~-~--~~~~~---~~-~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+.  ....|.||+... . +  +....   .. ..  ...+|+.+..+. .++++|.|.+++++|+|.|.
T Consensus        16 ~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~   95 (120)
T 3b9v_A           16 GSLRLSCAASGFNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYY   95 (120)
T ss_dssp             CCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             ccEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEEEECCCCHHHCEEEE
Confidence            468888887643  357899999642 2 1  11111   00 11  124688877543 46789999999999999999


Q ss_pred             EEEEeC
Q psy16425         70 CQVNTD   75 (163)
Q Consensus        70 C~~~~~   75 (163)
                      |.+.+.
T Consensus        96 C~~~~~  101 (120)
T 3b9v_A           96 CARWGG  101 (120)
T ss_dssp             EEEECT
T ss_pred             EEEEcC
Confidence            999543

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.53  E-value=2.3e-07  Score=53.80  Aligned_cols=57  Identities=11%  Similarity=0.198  Sum_probs=46.1

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--Ee--ceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DF--PFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~--~~l~i~~v~~~~~~  156 (163)
                      ....+.+|+++.|.|.+ +.|.+.+.|++++..+........  .+  ..|.|.+++.+|.+
T Consensus        16 ~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G   76 (95)
T 2k1m_A           16 RSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQG   76 (95)
T ss_dssp             CCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCS
T ss_pred             CcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCE
Confidence            46778999999999999 788999999999998865554443  22  36999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-10
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-07
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	0.004
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	9e-07
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-06
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	1e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	0.002
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	3e-06
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	7e-06
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	1e-05
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-05
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	9e-05
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-04
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-04
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	3e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	4e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	9e-04
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.001
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.001
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.002
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.002
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	0.002
d2g5ra1	121	b.1.1.1 (A:24-144) N-terminal domain of sialic aci	0.004

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 1e-10
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 88  VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG 129
           VPP +    +  +     G +VTL C A G P+P ++W ++G
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDG 43

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 6e-07
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 90  PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELI 133
           P I+ +P   D  +R G +V L    +G+     TW +   ++ 
Sbjct: 1   PQIIQFPE--DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQ 42

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (74), Expect = 0.004
 Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 53 WYLHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVVPPD 91
            L I   R+   G Y   V N    +     L VV  PD
Sbjct: 56 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD 95

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 9e-07
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 44  GVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVV 88
           G T  ++ +W L +  ++  D+G Y C ++       +   ++  
Sbjct: 60  GRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNS 104

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGEL 132
            +   + V  +C A G+P P + W + G E 
Sbjct: 16  AVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 46

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-06
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 89  PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR 127
            P + +     +    E S  T  C A G+P P +   +
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK 40

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-06
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 92  ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGEL 132
           IL      +     G +V   C      +P+I W +   + 
Sbjct: 6   ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 46

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.002
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 21  WLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV-NTDPMKS 79
            +  +           +      GV  ++ +   L+IR V   D G Y C   N+  +  
Sbjct: 42  HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISF 101

Query: 80  QVGYLEVV 87
              +L V+
Sbjct: 102 HSAWLTVL 109

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.7 bits (97), Expect = 2e-06
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 88  VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWR 126
             P I     + D     G  VTL+C A G+P P I WR
Sbjct: 3   YAPSIKAKFPA-DTYALTGQMVTLECFAFGNPVPQIKWR 40

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 41.4 bits (96), Expect = 3e-06
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 97  TSTDMVIREGSNVTLKCAASGSPKPNITWRR 127
            S DM+ + G    + C    +P     + +
Sbjct: 9   VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK 39

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 41.3 bits (96), Expect = 3e-06
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 89  PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITW 125
            P     P    +V+++G +VT+ C  +G P PN+ W
Sbjct: 2   APKYEQKPEKV-IVVKQGQDVTIPCKVTGLPAPNVVW 37

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 7e-06
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 89  PPDI-LDYPTST--DMVIREGSNVTLKCAASGSPKPNITWRREGGELI 133
           PP I LD P      +V+  G+ + L    SG P P + W++   +  
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGN 51

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 7/81 (8%), Positives = 18/81 (22%), Gaps = 3/81 (3%)

Query: 11  EMLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGW 67
             L A +            +      +++                  L  + +   D G 
Sbjct: 26  LALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGV 85

Query: 68  YMCQVNTDPMKSQVGYLEVVV 88
           Y   +  +  +     +   V
Sbjct: 86  YTLDMTDENYRRTQATVRFHV 106

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 3/62 (4%)

Query: 88  VPPDILDYPTSTDMVIREGSNVTLKC-AASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
           VPP        +      G+   L C    GSP    TW ++G  +         F    
Sbjct: 1   VPPSKPTVNIPSS--ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS 58

Query: 147 RT 148
             
Sbjct: 59  YV 60

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 3e-05
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 88  VPPDILDYPTSTDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELI 133
           VPP       S    +  G+   L C+   GSP    +W ++G  ++
Sbjct: 1   VPPSKP--TISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML 45

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (89), Expect = 3e-05
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 88  VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITW 125
           + P IL       + I+ G    L+    G+P P  TW
Sbjct: 1   LKPKILTASR--KIKIKAGFTHNLEVDFIGAPDPTATW 36

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 3e-05
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 99  TDMVIREGSNVTLKCAASGSPKPNITWRR 127
             + + +G  V L C+  G  +P+I W +
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEEPDIQWVK 32

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 5e-05
 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 89  PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITW 125
            P I +        + +GS+   +    G P P   W
Sbjct: 4   APKIFERIQ--SQTVGQGSDAHFRVRVVGKPDPECEW 38

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.2 bits (85), Expect = 9e-05
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 90  PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITW 125
           PD LD  T  D     GS++   C ASG P+P + W
Sbjct: 2   PDWLDVIT--DTEADIGSDLRWSCVASGKPRPAVRW 35

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 92  ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITW 125
           IL  P    M + EG +    C   G P P +TW
Sbjct: 2   ILTKPR--SMTVYEGESARFSCDTDGEPVPTVTW 33

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (84), Expect = 1e-04
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 99  TDMVIREGSNVTLKCAASGSPKPNITWRREGGE 131
           T    +EG +  + C    S  P I W+ +G +
Sbjct: 9   TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 41

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.4 bits (83), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 89  PPDILDYPTSTDMVIREGS---NVTLKCAASGSPKPNITWRREGGE 131
            P   + P     +  EGS    VTL C A  +P     W+  G E
Sbjct: 4   GPVFEEQPA--HTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTE 47

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 36.4 bits (83), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 85  EVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITW 125
           +  V P         DM + EGS     C   G P P + W
Sbjct: 4   KPHVKPYFTKTIL--DMEVVEGSAARFDCKVEGYPDPEVMW 42

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 3e-04
 Identities = 10/56 (17%), Positives = 15/56 (26%)

Query: 21 WLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76
                   +      I   ++       T    + I  +R SD G Y C V    
Sbjct: 33 QKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYE 88

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.6 bits (81), Expect = 4e-04
 Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 90  PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITW 125
           P  +  P      + EG +    C    S  P +TW
Sbjct: 2   PRFIVKPY--GTEVGEGQSANFYCRVIASSPPVVTW 35

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (82), Expect = 4e-04
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 53  WYLHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVVPPDI 92
             L I+ VR SD G Y C   +    +     L+V  P   
Sbjct: 81  VALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW 121

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 9e-04
 Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)

Query: 89  PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWR 126
           PP +    +S    I EG    L C +   P       
Sbjct: 2   PPRVKAVKSS--EHINEGETAMLVCKSESVPPVTDWAW 37

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.001
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 90  PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGE 131
           P I+  P +  M +  GS + L C  +G       W+  G  
Sbjct: 2   PVIV-SPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSV 42

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 1/36 (2%)

Query: 94  DYPTSTDMVIREGSNVTLKC-AASGSPKPNITWRRE 128
           +      +V          C       K  ITW ++
Sbjct: 5   EREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKD 40

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.8 bits (76), Expect = 0.002
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 90  PDILDYPTSTDMVIREGSNVTLKC-AASGSPKPNITWRREGGELI 133
           P ++         +R G++VT  C A S SP   + W R     +
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 45

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 53  WYLHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVV 88
             +++  ++ SD G Y C+V     + ++  +L V+V
Sbjct: 88  ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 124

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 53  WYLHIREVRESDRGWYMCQVNTDP-MKSQVGYLEVVV 88
             + I  +  SD G + C V   P +  +   + + V
Sbjct: 81  GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 0.004
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 47  HSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
             +TK   L IR+ R SD G Y  ++    +K
Sbjct: 77  DPQTKNCTLSIRDARMSDAGRYFFRMEKGNIK 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.47
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.46
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.43
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.39
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.37
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.36
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.34
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.33
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.32
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.31
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.3
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.29
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.28
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.28
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.27
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.27
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.26
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.26
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.25
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.24
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.24
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.22
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.22
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.22
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.2
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.18
d2avga1	110	Cardiac myosin binding protein C, different domain	99.18
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.18
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.16
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.16
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.15
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.15
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.14
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.13
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.13
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.1
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.09
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.08
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.08
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.07
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.07
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.06
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.06
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.06
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.05
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.04
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.03
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.02
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.02
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.01
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.01
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.99
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.99
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.98
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.97
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.97
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.94
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.94
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.94
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.94
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.93
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.93
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.92
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.91
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.91
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.9
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.9
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.88
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.86
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.85
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.82
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.82
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.82
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.8
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.8
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.77
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.75
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.73
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.73
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.72
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.7
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.7
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.7
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.68
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.67
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.66
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.66
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.65
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.64
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.64
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.64
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.63
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.62
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.61
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.61
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.6
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.6
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.6
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.59
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.58
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.58
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.58
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.56
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.56
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.56
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.52
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.52
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.5
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.49
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.47
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.44
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.43
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.43
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.42
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.4
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.39
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.39
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.39
d2avga1	110	Cardiac myosin binding protein C, different domain	98.38
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.34
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.34
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.34
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.34
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.33
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.33
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.32
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.3
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.3
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.29
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.29
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.28
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.28
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.28
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.27
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.26
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.25
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.22
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.22
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.19
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.18
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.18
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.17
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.16
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.15
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.14
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.13
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.13
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.11
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.11
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.1
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.1
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.08
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.07
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.07
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.07
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.06
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.05
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.04
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.03
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.02
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.02
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.02
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.01
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.01
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.01
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.0
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.0
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.99
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.98
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.96
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.95
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.95
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.92
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.91
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.91
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.91
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.91
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.89
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.88
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.87
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.87
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.86
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.86
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.86
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.85
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.84
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.83
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.82
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.8
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.78
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.75
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.74
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.73
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.72
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.69
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.66
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.64
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.64
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.6
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.58
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.57
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.48
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.36
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.34
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.31
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.26
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.25
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.24
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.22
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.22
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.21
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.21
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.21
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.21
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.21
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.19
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.18
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.18
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.18
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.15
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.15
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.15
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.15
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.13
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.12
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.11
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.1
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.09
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.09
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.07
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.07
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.06
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.06
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.06
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.06
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.04
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.02
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.02
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.01
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.99
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	96.99
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.98
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.97
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.96
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.95
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.94
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	96.94
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.93
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.93
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.92
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.92
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.91
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.91
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	96.89
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.88
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.87
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.86
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	96.86
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.86
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.86
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.83
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.8
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.79
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	96.78
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	96.77
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.75
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	96.75
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.74
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.73
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.73
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	96.73
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	96.72
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.69
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.66
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.64
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	96.6
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.57
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.57
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.57
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.52
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.52
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.51
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.49
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.45
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.43
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.39
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.37
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.37
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.36
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.34
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	96.33
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.33
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	96.3
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	96.28
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.26
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.2
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.18
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	96.12
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.12
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.12
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.11
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.11
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.09
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.07
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.06
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	96.05
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.01
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	95.99
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	95.99
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	95.82
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	95.79
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	95.79
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	95.77
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	95.77
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	95.72
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	95.68
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	95.67
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	95.6
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	95.56
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	95.55
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	95.54
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	95.5
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	95.48
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	95.46
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	95.45
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	95.34
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	95.18
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	95.11
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	95.06
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	95.06
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	95.05
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	95.04
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	94.98
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	94.92
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	94.86
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	94.8
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	94.8
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	94.79
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	94.77
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	94.76
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	94.74
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	94.69
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	94.66
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	94.66
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	94.63
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	94.61
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	94.58
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	94.57
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	94.56
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	94.52
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	94.49
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	94.48
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	94.48
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	94.39
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	94.34
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	94.28
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	94.27
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	94.22
d8faba1	103	Immunoglobulin light chain lambda variable domain,	94.15
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	94.09
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	94.09
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	93.93
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	93.92
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	93.88
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	93.82
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	93.79
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	93.75
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	93.7
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	93.68
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	93.58
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	93.55
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	93.55
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	93.5
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	93.48
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	93.4
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	93.34
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	93.21
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	93.09
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	93.07
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	93.05
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	92.97
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	92.95
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	92.87
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	92.87
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	92.86
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	92.82
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	92.71
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	92.52
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	92.51
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	92.39
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	92.36
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	92.24
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	92.17
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	92.16
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	91.8
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	91.78
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	91.77
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	91.72
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	91.63
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	91.63
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	91.62
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	91.51
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	91.45
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	91.44
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	91.4
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	91.37
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	91.36
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	91.29
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	91.28
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	91.16
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	91.16
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	91.15
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	90.88
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	90.72
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	90.69
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	90.62
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	90.53
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	90.48
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	90.33
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	90.26
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	90.25
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	90.24
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	90.15
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	89.69
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	89.6
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	89.52
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	89.51
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	89.48
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	89.43
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	89.17
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	89.16
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	89.03
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	89.02
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	88.88
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	88.86
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	88.82
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	88.63
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	88.6
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	88.54
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	88.46
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	88.45
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	88.44
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	88.34
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	88.33
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	88.21
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	88.18
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	88.14
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	88.13
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	88.08
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	88.07
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	87.85
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	87.74
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	87.55
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	87.54
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	87.52
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	87.47
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	87.44
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	87.42
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	87.4
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	87.37
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	87.33
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	87.25
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	87.23
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	87.2
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	87.12
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	87.11
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	86.94
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	86.83
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	86.77
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	86.76
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	86.74
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	86.47
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	86.43
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	86.37
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	86.35
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	86.3
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	86.15
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	86.14
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	86.07
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	86.06
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	85.99
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	85.91
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	85.87

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.47  E-value=3.3e-13  Score=78.87  Aligned_cols=76  Identities=17%  Similarity=0.248  Sum_probs=58.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.+.|...+.|.|.|.|++ ++..+        ....++.......+..+|.|.+++.+|+|.|+|.+.|. |.....
T Consensus        24 ~~~~l~C~~~g~P~p~v~W~k-~~~~i--------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   94 (102)
T d1fhga_          24 SAARFDCKVEGYPDPEVMWFK-DDNPV--------KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT   94 (102)
T ss_dssp             SCEEEEEEEEEESCCEEEEEE-TTEEC--------CCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEEeccCCeEEEEe-eeccc--------cceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEE
Confidence            367889999999999999999 56555        33455666555566778999999999999999999876 444555


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus        95 ~~L~V~  100 (102)
T d1fhga_          95 AELLVE  100 (102)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            566654

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.46  E-value=3.9e-13  Score=77.99  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.+.|...+.|.|.|.||+ ++..+.        ...+........+..+|.|.+++.+|+|.|+|.+.|. |.....
T Consensus        20 ~~v~l~c~v~g~P~p~v~W~k-~~~~i~--------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   90 (98)
T d1g1ca_          20 SDAHFRVRVVGKPDPECEWYK-NGVKIE--------RSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH   90 (98)
T ss_dssp             SCEEEEEEEEEESCCEEEEEE-TTEECC--------CCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEEEecCCeEEEEe-CceEEe--------eeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEE
Confidence            468889999999999999999 566552        2334443333344568999999999999999999876 444455


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus        91 ~~L~V~   96 (98)
T d1g1ca_          91 AFLLVQ   96 (98)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666664

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.2e-12  Score=75.14  Aligned_cols=79  Identities=22%  Similarity=0.232  Sum_probs=60.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+        ....++.+.... ...+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        16 ~~~~l~C~v~g~p~p~v~W~k-~~~~l--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   85 (101)
T d2cqva1          16 ESVELFGKVTGTQPITCTWMK-FRKQI--------QESEHMKVENSE-NGSKLTILAARQEHCGCYTLLVENKLGSRQAQ   85 (101)
T ss_dssp             CCEEEEEEEESSSSCEEEEEE-SSSBC--------CCSSSEEEEECS-SEEEEEETTCCTTTCEEEEEEEECSSCEEECC
T ss_pred             CcEEEEEEEEecCCCEEEEEe-Cceee--------ccCCcEEEEEec-ceeEEEEeeCCcccCEEEEEEEEECCCEEEEE
Confidence            468889999999999999999 55554        233455544433 3457999999999999999999776 555667


Q ss_pred             EEEEEEcCCc
Q psy16425         82 GYLEVVVPPD   91 (163)
Q Consensus        82 ~~l~v~~~p~   91 (163)
                      +.|.|...|.
T Consensus        86 ~~l~V~~~P~   95 (101)
T d2cqva1          86 VNLTVVDKPD   95 (101)
T ss_dssp             EEEEEECSCS
T ss_pred             EEEEEEecCC
Confidence            7888887664

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.43  E-value=8.4e-13  Score=75.17  Aligned_cols=71  Identities=23%  Similarity=0.310  Sum_probs=53.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.+.|...+.|.|.|.|++ ++..+        ....++.+...     .|.|.++..+|+|.|+|.+.|. +.....
T Consensus        17 ~~~~l~C~~~g~P~p~v~W~k-~g~~i--------~~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   82 (89)
T d1cs6a4          17 SDLRWSCVASGKPRPAVRWLR-DGQPL--------ASQNRIEVSGG-----ELRFSKLVLEDSGMYQCVAENKHGTVYAS   82 (89)
T ss_dssp             CCEEEECEEEEESCCEEEEEE-TTEEC--------CCCSSEEEETT-----EEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEEEEcCCEEEEEE-eeccc--------cccceeeeeee-----eEEEEeecccCCEEEEEEEEeCCCEEEEE
Confidence            468899999999999999999 56554        23445555432     7999999999999999999876 334445


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus        83 ~~l~V~   88 (89)
T d1cs6a4          83 AELTVQ   88 (89)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            566653

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=3.1e-12  Score=73.94  Aligned_cols=78  Identities=15%  Similarity=0.265  Sum_probs=55.6

Q ss_pred             ceeEEEeeeeccCC-CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCce--
Q psy16425          3 ARMLIEIGEMLMAE-STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKS--   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~--   79 (163)
                      ..+.|.|...+.|+ +.|.|++.++..+.       ....++..........+|.|.+++.+|+|.|+|.+.|.....  
T Consensus        16 ~~~~l~C~v~g~p~~~~v~W~~~~g~~~~-------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   88 (97)
T d1epfa1          16 ESKFFLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   88 (97)
T ss_dssp             CCEEEEEEECCCSCCCEEEEECTTSCEEC-------CBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             CcEEEEEEEEeccCCCEEEEEEeeeeeee-------eccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEE
Confidence            46888998888875 79999996665442       234556655544556689999999999999999998774333  


Q ss_pred             EeEEEEEE
Q psy16425         80 QVGYLEVV   87 (163)
Q Consensus        80 ~~~~l~v~   87 (163)
                      ..+.|.|+
T Consensus        89 ~tv~l~V~   96 (97)
T d1epfa1          89 ATVNVKIF   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            33455543

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.37  E-value=2e-12  Score=73.57  Aligned_cols=69  Identities=23%  Similarity=0.390  Sum_probs=51.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.|.|.|++ ++..+         ..+++.....     .|.|.+++..|+|.|+|.+.|. +.....
T Consensus        19 ~~~~l~C~~~g~P~p~v~W~~-~~~~i---------~~~~~~~~~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~   83 (89)
T d1biha4          19 QDVTIPCKVTGLPAPNVVWSH-NAKPL---------SGGRATVTDS-----GLVIKGVKNGDKGYYGCRATNEHGDKYFE   83 (89)
T ss_dssp             SCEEEECEEEEESCCCCEEEE-TTEEC---------CSSSEEEETT-----EEEESSCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEEEeCCCEEEEEe-CCccC---------ccccEEEeee-----eEEECCCChhhCEEEEEEEEECCCEEEEE
Confidence            468899999999999999999 56554         1244544433     6999999999999999999876 333444


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus        84 ~~l~V   88 (89)
T d1biha4          84 TLVQV   88 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44444

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.36  E-value=2.8e-13  Score=78.46  Aligned_cols=75  Identities=20%  Similarity=0.302  Sum_probs=50.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+....     .........   ...+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        21 ~~v~l~C~~~g~P~p~i~W~k-ng~~l~~~~-----~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   91 (97)
T d3dara1          21 NTVKFRCPAGGNPMPTMRWLK-NGKEFKQEH-----RIGGYKVRN---QHWSLIMESVVPSDKGNYTCVVENEYGSINHT   91 (97)
T ss_dssp             CCEEEECCEEEESCCEEEEEE-TTEECCGGG-----STTCCEEEG---GGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEeEECCCEEEEEE-CCEeccccC-----ceeeEEEcC---CcEEEEECCCCcccCEEEEEEEEECCCEEEEE
Confidence            468899999999999999999 565542110     011111111   2238999999999999999999876 333444


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus        92 ~~l~V   96 (97)
T d3dara1          92 YHLDV   96 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            45544

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.34  E-value=1.3e-12  Score=75.60  Aligned_cols=76  Identities=16%  Similarity=0.268  Sum_probs=55.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+.        ...++..... .+...|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        17 ~~~~l~C~~~g~P~p~v~W~~-~~~~l~--------~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   86 (97)
T d1koaa1          17 QSANFYCRVIASSPPVVTWHK-DDRELK--------QSVKYMKRYN-GNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEI   86 (97)
T ss_dssp             SCEEEEEEEECSSCCEEEEEE-TTEECC--------SBTTBBCCCS-TTEEEEEESCCCSGGGSCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEEEcCCCEEEEEE-eeeccc--------eeeEEEEEec-CCeeEEEeCCCceecCEEEEEEEEECCCEEEEE
Confidence            468899999999999999999 555542        2233333322 24558999999999999999999876 444555


Q ss_pred             EEEEEEc
Q psy16425         82 GYLEVVV   88 (163)
Q Consensus        82 ~~l~v~~   88 (163)
                      +.|.|..
T Consensus        87 ~~l~V~~   93 (97)
T d1koaa1          87 VFLNVTR   93 (97)
T ss_dssp             ECCEEEC
T ss_pred             EEEEEee
Confidence            5666654

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.2e-12  Score=71.39  Aligned_cols=68  Identities=12%  Similarity=0.080  Sum_probs=51.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++.+.....                ..    ..|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        15 ~~~~L~C~~~g~p~P~i~W~~~~~~~~~----------------~~----~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~   74 (84)
T d2nxyb2          15 QSLTLTLESPPGSSPSVQCRSPRGKNIQ----------------GG----KTLSVSQLELQDSGTWTCTVLQNQKKVEFK   74 (84)
T ss_dssp             CCEEEEEECCTTCCCEEEEECTTCCEEE----------------ES----SEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEeEcCCchheEEEeeccccee----------------ee----eeeeeeecccccccEEEEEEEeCCCEEEEE
Confidence            3688999999999999999995443221                11    17999999999999999999776 444455


Q ss_pred             EEEEEEcCC
Q psy16425         82 GYLEVVVPP   90 (163)
Q Consensus        82 ~~l~v~~~p   90 (163)
                      +.|.|...|
T Consensus        75 ~~v~V~~~~   83 (84)
T d2nxyb2          75 IDIVVLAFQ   83 (84)
T ss_dssp             EEECEECCC
T ss_pred             EEEEEEecC
Confidence            566666544

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.32  E-value=3.4e-12  Score=73.13  Aligned_cols=74  Identities=12%  Similarity=0.127  Sum_probs=52.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.+.|...+.|.|.+.|++ ++..+.        ...++...... ...+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        18 ~~~~l~c~~~g~P~p~v~W~~-~~~~i~--------~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   87 (93)
T d1wiua_          18 FTHNLEVDFIGAPDPTATWTV-GDSGAA--------LAPELLVDAKS-STTSIFFPSAKRADSGNYKLKVKNELGEDEAI   87 (93)
T ss_dssp             BCCEEEEEEECCSSCEEEEEC-SSSSCB--------CSTTSEEEEET-TEEEEECTTBCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEEEecCCeEEEEe-eeeece--------eeeeeeecccc-cceeeccccccccccEEEEEEEEECCCEEEEE
Confidence            467899999999999999999 454442        22333333332 3458999999999999999999876 434444


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus        88 ~~l~V   92 (93)
T d1wiua_          88 FEVIV   92 (93)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44444

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4e-12  Score=73.84  Aligned_cols=77  Identities=18%  Similarity=0.268  Sum_probs=52.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++ ++..+....    ....+....   .....|.|.+++.+|+|.|.|.+.|. +.....
T Consensus        21 ~~v~l~C~~~g~P~p~i~W~~-~g~~i~~~~----~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   92 (100)
T d1qz1a3          21 QSVTLVCDADGFPEPTMSWTK-DGEPIENEE----EDDEKHIFS---DDSSELTIRNVDKNDEAEYVCIAENKAGEQDAS   92 (100)
T ss_dssp             CCEEEEEEEEEESCCEEEEEE-TTEECCCC------CCSSEEEC---TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCEEEEEEEEEecCCEEEEEe-CCccccccc----ccceeEEee---cCceEEEeCCCCcccCEEEEEEEEECCCEEEEE
Confidence            468899999999999999999 555542211    011111111   12348999999999999999999876 444455


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|.
T Consensus        93 ~~l~V~   98 (100)
T d1qz1a3          93 IHLKVF   98 (100)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            566665

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2e-12  Score=75.57  Aligned_cols=82  Identities=11%  Similarity=0.076  Sum_probs=53.1

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY   83 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~   83 (163)
                      ..+.|...+.|.|.|.|++ ++..+........    +............|.|.+++..|+|.|+|.+.|. +..+..+.
T Consensus        19 ~~i~~~v~G~P~P~i~W~~-~g~~l~~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          19 WCIPFTVKGNPKPALQWFY-NGAILNESKYICT----KIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             EEEEEEEECSSCCEEEEEE-TTEEECCCSSEEE----EEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEEEEeCCCEEEEEE-CCEEeeeeeeeee----eecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            4567788899999999999 6666532111100    0111111123347999999999999999999876 44555556


Q ss_pred             EEEEcCCc
Q psy16425         84 LEVVVPPD   91 (163)
Q Consensus        84 l~v~~~p~   91 (163)
                      |.|...|.
T Consensus        94 v~V~~~P~  101 (103)
T d1wwbx_          94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEEEeCCC
Confidence            66655554

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.29  E-value=2.9e-12  Score=73.15  Aligned_cols=74  Identities=23%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.+.|...+.|.|.|.|++ ++..+.        ...++...... ...+|.|.+++.+|+|.|.|.+.|. +.....
T Consensus        15 ~~~~l~C~~~g~P~p~v~W~~-~g~~l~--------~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   84 (91)
T d1tnna_          15 ESARFSCDTDGEPVPTVTWLR-KGQVLS--------TSARHQVTTTK-YKSTFEISSVQASDEGNYSVVVENSEGKQEAE   84 (91)
T ss_dssp             SCCCEEEECCCSSCCCCEEES-SSSTTC--------SSSSCEEEECS-SEEEEECSSCCSCCCEEEEEECBCSSCBCCEE
T ss_pred             CcEEEEEEEEEEeCCeEEEEE-eecccc--------cccceeeeeec-ceeEEeecCCCHHHCEEEEEEEEECCCEEEEE
Confidence            367889999999999999999 555542        22333333322 3458999999999999999999776 444555


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus        85 ~~l~V   89 (91)
T d1tnna_          85 FTLTI   89 (91)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            55554

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=7.4e-12  Score=71.59  Aligned_cols=74  Identities=20%  Similarity=0.354  Sum_probs=51.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++. +..+..      ....++.....+    +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        17 ~~~~l~C~v~g~p~p~v~W~~~-~~~i~~------~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~   85 (92)
T d1epfa2          17 EDAVIVCDVVSSLPPTIIWKHK-GRDVIL------KKDVRFIVLSNN----YLQIRGIKKTDEGTYRCEGRILARGEINF   85 (92)
T ss_dssp             SCEEECCEEECSSCCEEEEEET-TEEGGG------GCCTTEEECTTS----CEEETTCCGGGCEEEEEEEEEGGGTEEEE
T ss_pred             CcEEEEEEEeecCCCeEEEEEc-Cccccc------ccceeeeeeeee----eEEECCCCHHhCEEEEEEEEECcCCEEEE
Confidence            4688899999999999999994 443321      122333333333    7999999999999999999775 444444


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      ..+.|.
T Consensus        86 ~~i~Vi   91 (92)
T d1epfa2          86 KDIQVI   91 (92)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            455543

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1e-11  Score=70.63  Aligned_cols=72  Identities=10%  Similarity=0.128  Sum_probs=50.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|...+.|.|.|.|++.++...          .+.....   .....|.|.+++.+|+|.|+|.+.|. +..+..
T Consensus        17 ~~v~l~C~~~g~p~p~i~W~~~~~~~~----------~~~~~~~---~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~   83 (90)
T d1vcaa2          17 DSVSLTCSTTGCESPFFSWRTQIDSPL----------NGKVTNE---GTTSTLTMNPVSFGNEHSYLCTATCESRKLEKG   83 (90)
T ss_dssp             SCEEEEEEEESCSSCEEEEEETTCCCC----------SSEEEEE---TTEEEEEESSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEeccCCCCceEEEEecCccce----------eeeeeee---cCCcEEEEecccccccceEEEEEEeCCCEEEEE
Confidence            468999999999999999999554332          1111111   12348999999999999999999776 344455


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|+
T Consensus        84 ~~v~V~   89 (90)
T d1vcaa2          84 IQVEIY   89 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555553

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.27  E-value=8e-12  Score=71.28  Aligned_cols=69  Identities=17%  Similarity=0.263  Sum_probs=49.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      ..+.|.|...+.|.|.|.|++.++....           +. ..    .+.+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        21 ~~v~l~C~~~g~P~p~i~W~k~~~~~~~-----------~~-~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   84 (91)
T d1cs6a3          21 QMVTLECFAFGNPVPQIKWRKLDGSQTS-----------KW-LS----SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ   84 (91)
T ss_dssp             CCEEEECEEEEESCCEEEEEECCSCCSC-----------CC-SB----SSSEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEEEccCCEEEEEecccccce-----------Ee-ee----eeeEEEeCCCCccCCEEEEEEEEECCCEEEEE
Confidence            4688999999999999999995543211           00 01    1228999999999999999999876 444455


Q ss_pred             EEEEEE
Q psy16425         82 GYLEVV   87 (163)
Q Consensus        82 ~~l~v~   87 (163)
                      +.|.|+
T Consensus        85 ~~l~V~   90 (91)
T d1cs6a3          85 GRIIIH   90 (91)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            556554

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.27  E-value=2.5e-11  Score=71.37  Aligned_cols=85  Identities=16%  Similarity=0.203  Sum_probs=51.6

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CC
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PM   77 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~   77 (163)
                      ..++.|.|...+.|.|.|.|++.+......   .+.....................|.|.+++.+|+|.|+|.+.|. +.
T Consensus        20 G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~   99 (109)
T d2fdbp2          20 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI   99 (109)
T ss_dssp             TCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEECCCE
Confidence            347889999999999999999853221110   00000011111111122224568999999999999999999776 44


Q ss_pred             ceEeEEEEE
Q psy16425         78 KSQVGYLEV   86 (163)
Q Consensus        78 ~~~~~~l~v   86 (163)
                      ....+.|.|
T Consensus       100 ~~~~~~L~V  108 (109)
T d2fdbp2         100 SFHSAWLTV  108 (109)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            555556654

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-11  Score=70.11  Aligned_cols=76  Identities=22%  Similarity=0.351  Sum_probs=52.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEEeCCC--ce
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVNTDPM--KS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~   79 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+..        ..+..... .......|.|.+++.+|+|.|+|.+.|...  .+
T Consensus        12 ~~~~l~C~v~g~p~p~v~W~k-~g~~l~~--------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1          12 QPVKLNCSVEGMEEPDIQWVK-DGAVVQN--------LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CCEEEEEEEESCSSCCEEEEE-TTEECCS--------SEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeEEEEEEEEecCCceEEEEE-eeccccc--------ceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            468899999999999999999 5655422        22222222 222345799999999999999999977632  24


Q ss_pred             EeEEEEEE
Q psy16425         80 QVGYLEVV   87 (163)
Q Consensus        80 ~~~~l~v~   87 (163)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            45566553

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.26  E-value=1.2e-11  Score=71.43  Aligned_cols=76  Identities=17%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-C-ceE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-M-KSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~-~~~   80 (163)
                      ..+.|.|...+.|.+.|.|++ ++..+...      ...++.. .......+|.|.+++.+|+|.|+|.+.|.. . .+.
T Consensus        19 ~~v~l~C~~~g~P~~~v~W~k-~g~~i~~~------~~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   90 (97)
T d1biha3          19 DVTMIYCMYGSNPMGYPNYFK-NGKDVNGN------PEDRITR-HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH   90 (97)
T ss_dssp             SCEEEEEEEECSSCCCCEEEE-TTEECCCC------TTSSEES-CSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             CeEEEEEEEEEecCCEEEEEE-eeeecccc------ceeeeee-eeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence            468899999999999999999 55544211      1122221 112233589999999999999999997763 3 233


Q ss_pred             eEEEEE
Q psy16425         81 VGYLEV   86 (163)
Q Consensus        81 ~~~l~v   86 (163)
                      .+.|.|
T Consensus        91 s~~L~V   96 (97)
T d1biha3          91 SLKLTV   96 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            455655

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2e-11  Score=71.44  Aligned_cols=79  Identities=14%  Similarity=0.091  Sum_probs=50.4

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeC-CCceEeE
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVG   82 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~   82 (163)
                      ..+.|...+.|.|.|.|++ ++..+.....      .++...... .....|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus        20 ~~i~~~v~G~P~P~v~W~~-n~~~i~~~~~------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   92 (105)
T d1wwca_          20 HCIEFVVRGNPPPTLHWLH-NGQPLRESKI------IHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI   92 (105)
T ss_dssp             EEEEEEEECSSCCEEEEEE-TTEECCCSSS------EEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEEeCCCeEEEEe-CccccCCCcc------eeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEE
Confidence            3456677899999999999 5665522111      111111111 13457999999999999999999876 3344445


Q ss_pred             EEEEEcCC
Q psy16425         83 YLEVVVPP   90 (163)
Q Consensus        83 ~l~v~~~p   90 (163)
                      .|.|..+|
T Consensus        93 ~v~V~~~P  100 (105)
T d1wwca_          93 NGHFLKEP  100 (105)
T ss_dssp             EECCSCCC
T ss_pred             EEEEEeCC
Confidence            55554444

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=2.4e-11  Score=69.88  Aligned_cols=75  Identities=17%  Similarity=0.356  Sum_probs=53.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--eE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--SQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~~   80 (163)
                      .++.|.|...+ +.+.|.|++ ++..+.        ...+.......   .+|.|.+++.+|+|.|+|.+.|....  +.
T Consensus        19 ~~v~l~C~~~~-~~~~v~W~~-~~~~l~--------~~~~~~~~~~~---~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~   85 (96)
T d1l6za2          19 DSVTLTCLSND-IGANIQWLF-NSQSLQ--------LTERMTLSQNN---SILRIDPIKREDAGEYQCEISNPVSVRRSN   85 (96)
T ss_dssp             SCEEEEECCCC-SSCEEEEEE-TTEECC--------CCTTEEEETTT---TEEEECSCCGGGCEEEEEEEESSSCCEECC
T ss_pred             CeEEEEEccCC-CCCCEEEEE-eeeecc--------cccceeccCCc---eEEEEeccchhhceEEEEEEEeCCCCeEEE
Confidence            46888888755 668999999 565542        23344443322   27999999999999999999876332  34


Q ss_pred             eEEEEEEcCC
Q psy16425         81 VGYLEVVVPP   90 (163)
Q Consensus        81 ~~~l~v~~~p   90 (163)
                      .+.|.|.++|
T Consensus        86 ~~~L~V~~~P   95 (96)
T d1l6za2          86 SIKLDIIFDP   95 (96)
T ss_dssp             CCEEEECCSC
T ss_pred             eEEEEEEcCC
Confidence            5678887776

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1e-11  Score=71.09  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=45.0

Q ss_pred             ceeEEEeeeeccCC-CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceE
Q psy16425          3 ARMLIEIGEMLMAE-STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   80 (163)
                      ..+.|.|...+.|+ +.|.|+|+ +..+.        ...+......+    +|.|.+++.+|+|.|+|.+.+....+.
T Consensus        22 ~~v~L~C~~~g~~~~~~i~W~k~-~~~l~--------~~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~n~~~~t~   87 (93)
T d1n26a1          22 DSVTLTCPGVEPEDNATVHWVLR-KPAAG--------SHPSRWAGMGR----RLLLRSVQLHDSGNYSCYRAGRPAGTV   87 (93)
T ss_dssp             CCEEEECTTSCTTCCSEEEEEEE-CSSSS--------CCCEEEEEESS----EEEECSCCGGGCEEEEEESSSSCSCEE
T ss_pred             CcEEEEEEeecCCCCceEEEEEc-ccccc--------ceeeEEecCCC----EEEECCCChhcCEEEEEEECCccccEE
Confidence            46888998887665 68999995 44431        12333333333    899999999999999999865544433

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8.5e-11  Score=68.54  Aligned_cols=80  Identities=20%  Similarity=0.312  Sum_probs=52.4

Q ss_pred             cceeEEEeeeeccC-CCEEEEEEcCCceEEeeeeeEEecCCeEEEEe-CCCceEEEEEcccCCCCCeEEEEEEEeCCCc-
Q psy16425          2 AARMLIEIGEMLMA-ESTVAWLRVDTQTILTIQTHVITKNHRIGVTH-SETKAWYLHIREVRESDRGWYMCQVNTDPMK-   78 (163)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-   78 (163)
                      +..+.|.|...+.| .|.|.|+|.+.......      ...+..... .......|.|.+++.+|+|.|+|.+.|.... 
T Consensus        18 G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   91 (104)
T d2aw2a1          18 GDPFELECPVKYCANRPHVTWCKLNGTTCVKL------EDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLI   91 (104)
T ss_dssp             TSCEEEEEEEECSSSCCEEEEEEECSSCEEEC------CSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCeEEEEEEEEeeCCCCEEEEEecCccccccc------ceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeE
Confidence            34688999999988 48999999654443221      112222222 2234557999999999999999999876432 


Q ss_pred             -eEeEEEEEE
Q psy16425         79 -SQVGYLEVV   87 (163)
Q Consensus        79 -~~~~~l~v~   87 (163)
                       +..+.|.|.
T Consensus        92 ~s~~~~l~V~  101 (104)
T d2aw2a1          92 ESHSTTLYVT  101 (104)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             334555543

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=8e-11  Score=68.37  Aligned_cols=79  Identities=14%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeee-eeE--EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCc
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQ-THV--ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMK   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~-~~~--~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~   78 (163)
                      ..+.|.|...+.|.|.|.|++.++....... ...  .....+.....     .+|.|.+++.+|+|.|+|.+.+. +..
T Consensus        17 ~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~tL~I~~v~~~D~G~Y~C~a~n~~g~~   91 (102)
T d1f97a1          17 ESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS-----SGITFSSVTRKDNGEYTCMVSEEGGQN   91 (102)
T ss_dssp             CCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET-----TEEEESCCCGGGCEEEEEEEEETTSSS
T ss_pred             CEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecC-----CEEEEeECCccCCEEEEEEEEECCCCE
Confidence            4688999999999999999996554432211 111  12233443332     27999999999999999999776 444


Q ss_pred             eEeEEEEE
Q psy16425         79 SQVGYLEV   86 (163)
Q Consensus        79 ~~~~~l~v   86 (163)
                      ...+.+.|
T Consensus        92 ~~~~~v~v   99 (102)
T d1f97a1          92 YGEVSIHL   99 (102)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            44444544

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=9.9e-12  Score=73.71  Aligned_cols=83  Identities=13%  Similarity=0.202  Sum_probs=53.8

Q ss_pred             ceeEEEeeeeccC---CCEEEEEEcCCceEEeeeeeEEecCCeEEEEe----C-CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMA---ESTVAWLRVDTQTILTIQTHVITKNHRIGVTH----S-ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~---~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~----~-~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.+.|...+.|   .|.|.|++.+......      ....++....    . ....++|.|.+++.+|+|.|+|.+.|
T Consensus        16 ~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   89 (113)
T d2dava1          16 EDITFIAKVKAEDLLRKPTIKWFKGKWMDLAS------KAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTY   89 (113)
T ss_dssp             CCEEEEEEEECCCSSSCCEEEEEESSSCCHHH------HTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEEC
T ss_pred             CEEEEEEEEccCCCCCCCEEEEEEeecccccc------ccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEe
Confidence            4688899888877   5899999953221110      0111111111    0 11345799999999999999999977


Q ss_pred             C-CCceEeEEEEEEcCCc
Q psy16425         75 D-PMKSQVGYLEVVVPPD   91 (163)
Q Consensus        75 ~-~~~~~~~~l~v~~~p~   91 (163)
                      . +..+..+.|.|..++.
T Consensus        90 ~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          90 KDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             SSCEEEECCEEEEECCCC
T ss_pred             CCCEEEEEEEEEEEcCCC
Confidence            6 5556667788875543

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.20  E-value=1.2e-11  Score=70.19  Aligned_cols=58  Identities=28%  Similarity=0.430  Sum_probs=52.0

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ....+..|+++.|.|.+.|.|.|.+.|++++.++....+....++.|.|.+++.+|.+
T Consensus         9 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G   66 (89)
T d1cs6a4           9 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSG   66 (89)
T ss_dssp             CCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCE
T ss_pred             CCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCE
Confidence            3567889999999999999999999999999999877777778889999999999876

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.1e-10  Score=66.00  Aligned_cols=69  Identities=26%  Similarity=0.340  Sum_probs=46.9

Q ss_pred             ceeEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425          3 ARMLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~   80 (163)
                      ..+.|.|... +.|.+.|.|++.+ ..+.         ..+.. ...+    +|.|.+++.+|+|.|+|.+.|. +....
T Consensus        18 ~~~~l~C~~~~~~p~~~v~W~k~~-~~~~---------~~~~~-~~~~----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~   82 (89)
T d1gl4b_          18 ADVTFICTAKSKSPAYTLVWTRLH-NGKL---------PSRAM-DFNG----ILTIRNVQPSDAGTYVCTGSNMFAMDQG   82 (89)
T ss_dssp             CCEEEEEEEEESSSCCEEEEEEGG-GBCC---------CTTEE-EETT----EEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CcEEEEEEccCCCCCCEEEEecCC-ceee---------ccccE-eece----EEEEecCCcccCEEEEEEEEECCCEEEE
Confidence            3677888875 6788999999954 3331         11211 2222    8999999999999999999776 33344


Q ss_pred             eEEEEE
Q psy16425         81 VGYLEV   86 (163)
Q Consensus        81 ~~~l~v   86 (163)
                      .+.|.|
T Consensus        83 ~~~l~V   88 (89)
T d1gl4b_          83 TATLHV   88 (89)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444444

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.5e-11  Score=71.55  Aligned_cols=80  Identities=16%  Similarity=0.223  Sum_probs=51.6

Q ss_pred             ceeEEEeeeeccC---CCEEEEEEcCCceEEeeeeeEEecCCeEEEEe-----CCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMA---ESTVAWLRVDTQTILTIQTHVITKNHRIGVTH-----SETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~---~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.+.|...+.|   .|.|.|++.+...+...      ...++....     .....+.|.|.+++..|+|.|+|.+.|
T Consensus        20 ~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   93 (110)
T d2avga1          20 GSITFSARVAGASLLKPPVVKWFKGKWVDLSSK------VGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVST   93 (110)
T ss_dssp             SEEEEEEEEECCSCSSSCEEEEECSTTCCSTTT------CSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEE
T ss_pred             CCEEEEEeecCCCCCCCCEEEEEeCceeeeccc------CCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEE
Confidence            4788889888887   68899999432221110      011111111     111345899999999999999999977


Q ss_pred             C-CCceEeEEEEEEc
Q psy16425         75 D-PMKSQVGYLEVVV   88 (163)
Q Consensus        75 ~-~~~~~~~~l~v~~   88 (163)
                      . +..+..+.|.|..
T Consensus        94 ~~G~~~~~~~L~V~~  108 (110)
T d2avga1          94 KDKFDCSNFNLTVHE  108 (110)
T ss_dssp             TTEEEEEEEEEEEES
T ss_pred             CCCeEEEEEEEEEEe
Confidence            6 4555666777654

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.2e-11  Score=69.25  Aligned_cols=77  Identities=10%  Similarity=0.068  Sum_probs=51.1

Q ss_pred             EEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCC----CceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          7 IEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSE----TKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         7 ~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      +.|...+.|.|.|.|++ ++..+.....      .+.......    .....|.|.++..+|+|.|+|.+.|. +.....
T Consensus        20 i~~~v~G~P~P~v~W~~-ng~~l~~~~~------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~   92 (107)
T d1he7a_          20 IPFSVDGQPAPSLRWLF-NGSVLNETSF------IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (107)
T ss_dssp             EEEEECCSSCCEEEEEE-TTEECCCCSS------EEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEecCCeEEEEE-eeeEccCccc------eeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEE
Confidence            45678899999999999 6665532111      011111111    12357999999999999999999877 445555


Q ss_pred             EEEEEEcCC
Q psy16425         82 GYLEVVVPP   90 (163)
Q Consensus        82 ~~l~v~~~p   90 (163)
                      +.+.+..+|
T Consensus        93 i~v~v~~~P  101 (107)
T d1he7a_          93 IMAAFMDNP  101 (107)
T ss_dssp             EEECCCSCT
T ss_pred             EEEEEEcCC
Confidence            666666666

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1e-10  Score=68.03  Aligned_cols=60  Identities=18%  Similarity=0.282  Sum_probs=43.1

Q ss_pred             ceeEEEe------eeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEI------GEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~------~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ....|.|      ...+.|.|.|.|++ ++..+..       ...++ ....+    .|.|.+++.+|+|.|+|.+.+.
T Consensus        15 ~~~~l~Cp~~~~~~~~~~p~P~i~W~k-dg~~l~~-------~~~~~-~~~~~----~L~I~~v~~~D~G~Y~C~a~n~   80 (103)
T d1iray2          15 GDGGLVCPYMEFFKNENNELPKLQWYK-DCKPLLL-------DNIHF-SGVKD----RLIVMNVAEKHRGNYTCHASYT   80 (103)
T ss_dssp             SCEEEECTTGGGGCBTTTBCCCCEEEE-TTEECCC-------CSSSE-EEETT----EEEESSCCGGGCEEEEEEEEEE
T ss_pred             CCEEEEcCCccccccCCCCCCEEEEEE-CCccccC-------CCcEE-EecCC----EEEEcccccccCcEEEEEEEEC
Confidence            3556777      45788999999999 6666521       12222 22333    7999999999999999999654

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=9.4e-12  Score=69.86  Aligned_cols=63  Identities=13%  Similarity=0.065  Sum_probs=45.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .++.|.|.+.+.|.|.|.|++ ++..+..                      .+.+.+++.+|+|.|.|.+.|. +..+..
T Consensus        20 ~~~~l~C~a~G~P~P~v~W~k-~g~~~~~----------------------~~~~~~v~~~d~G~Y~C~A~N~~G~~~~~   76 (84)
T d2oz4a3          20 SQQTPMCQAWGNPLPELKCLK-DGTFPLP----------------------IGESVTVTRDLEGTYLCRARSTQGEVTRE   76 (84)
T ss_dssp             CEECCCCCCEEESCCEEEEEE-TTTEECC----------------------TTSCEECCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEEEeEcCccEEEEEE-eecccee----------------------eeeeeccccCCCCEEEEEEEcCCCEEEEE
Confidence            468889999999999999999 5544321                      1234567899999999999876 344455


Q ss_pred             EEEEEEc
Q psy16425         82 GYLEVVV   88 (163)
Q Consensus        82 ~~l~v~~   88 (163)
                      +.|.|..
T Consensus        77 ~~l~V~~   83 (84)
T d2oz4a3          77 VTVNVLS   83 (84)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            5666653

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.8e-11  Score=69.64  Aligned_cols=79  Identities=13%  Similarity=0.148  Sum_probs=51.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeee-eeE--EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCc
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQ-THV--ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMK   78 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~-~~~--~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~   78 (163)
                      .++.|.|...+.|.|.|.|++.++....... ...  .....+.....     .+|.|.+++.+|+|.|.|.+.|. +..
T Consensus        20 ~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n~~G~~   94 (105)
T d1nbqa1          20 NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-----TGITFKSVTREDTGTYTCMVSEEGGNS   94 (105)
T ss_dssp             CCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-----TEEECSCCCTTSCSEEEEEEEETTSSC
T ss_pred             CeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecC-----ceEEEecccccceeeEEEEEEECCCCE
Confidence            4688999999999999999995443322111 001  11223333322     27999999999999999999776 444


Q ss_pred             eEeEEEEE
Q psy16425         79 SQVGYLEV   86 (163)
Q Consensus        79 ~~~~~l~v   86 (163)
                      ...+.+.+
T Consensus        95 ~~~~~v~v  102 (105)
T d1nbqa1          95 YGEVKVKL  102 (105)
T ss_dssp             EECCEEEC
T ss_pred             EEEEEEEE
Confidence            44444443

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.4e-11  Score=66.78  Aligned_cols=69  Identities=19%  Similarity=0.162  Sum_probs=46.3

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC-CceE
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP-MKSQ   80 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~   80 (163)
                      ..+.|.|.. .+.|.+.+.|++.+. .+..           ...   ......|.|.+++.+|+|.|+|.+.+.. ....
T Consensus        19 ~~~~l~C~~~~g~p~p~v~W~~~~~-~~~~-----------~~~---~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~   83 (90)
T d1gsma1          19 ASRQLTCRLACADRGASVQWRGLDT-SLGA-----------VQS---DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQH   83 (90)
T ss_dssp             CCEEEEEEECCSSTTCEEEEESSTT-TTCC-----------EEE---ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CcEEEEEEecCCCCccEEEEEEeee-eeee-----------eec---cCceeeEEcCccChhhCCcEEEEEEeCCCcEEE
Confidence            467888865 478899999998543 2210           011   1123489999999999999999997763 3334


Q ss_pred             eEEEEE
Q psy16425         81 VGYLEV   86 (163)
Q Consensus        81 ~~~l~v   86 (163)
                      .+.|.|
T Consensus        84 s~~l~V   89 (90)
T d1gsma1          84 TVQLLV   89 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            445544

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.9e-11  Score=67.70  Aligned_cols=60  Identities=17%  Similarity=0.284  Sum_probs=43.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|...+ +.+.+.|++ ++..+..       ...++.....+    +|.|.+++++|+|.|+|.+.+.
T Consensus        13 ~~~~l~C~~~g-~~~~v~W~~-~g~~l~~-------~~~~~~~~~~~----~L~I~~v~~~DsG~Y~C~A~n~   72 (92)
T d1olza1          13 GTAELKCSQKS-NLARVFWKF-QNGVLKA-------ESPKYGLMGRK----NLLIFNLSEGDSGVYQCLSEER   72 (92)
T ss_dssp             SCEEECCCCSC-TTCEEEEEE-SSSBCCC-------CSSSBCCTTTT----CEEECSCCGGGCEEEEEEEEEE
T ss_pred             CEEEEEEEeec-cCCceeeec-Cccccee-------eeeeeecceee----EEEECCCCHHHCcEEEEEEEEc
Confidence            46888998887 778999999 5554421       12333333333    7999999999999999999765

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=8.3e-11  Score=69.22  Aligned_cols=82  Identities=20%  Similarity=0.283  Sum_probs=49.9

Q ss_pred             cceeEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecC--CeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CC
Q psy16425          2 AARMLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKN--HRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PM   77 (163)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~   77 (163)
                      ..++.|.|... +.|.+.|.|++ ++..+...........  .......   ....|.|.+++.+|+|.|+|.+.|. +.
T Consensus        17 G~~v~L~C~~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          17 GNRAVLTCSEHDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTIDP---KSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             TSCEEEEEECSCCBSCCEEEEEE-TTEESBC-----CBSCSSSCEEECT---TTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             CCeEEEEEEeecCCCCCEEEEEe-CCeEecCCCceeEEeecCceEEEee---cccceEECCCCccCCEEEEEEEEECCCc
Confidence            34688999864 79999999999 5554432221111111  1111111   2337999999999999999999876 33


Q ss_pred             ce--EeEEEEEE
Q psy16425         78 KS--QVGYLEVV   87 (163)
Q Consensus        78 ~~--~~~~l~v~   87 (163)
                      ..  ..+.|+|.
T Consensus        93 ~~~s~~v~l~V~  104 (110)
T d1f97a2          93 AMRSEAAHMDAV  104 (110)
T ss_dssp             CEECCCEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            32  33455554

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.6e-10  Score=66.17  Aligned_cols=62  Identities=18%  Similarity=0.276  Sum_probs=43.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .++.|.|.. +.|.+.|.||+ ++..+..       ...++..... .+...|.|.+++..|+|.|+|.+.+
T Consensus        22 ~~v~l~c~v-~~p~~~v~W~k-~g~~i~~-------~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_          22 HKIRLTVEL-ADHDAEVKWLK-NGQEIQM-------SGSKYIFESI-GAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             SCEEEEEEC-SSSSSCCEEEE-SSSEECC-------CSSSSEEEEE-TTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CeEEEEEEE-CCCCceEEEEE-cCcccee-------eeeeEeeecc-CCeEEeecCCCCceecEEEEEEEee
Confidence            357788876 45889999999 6665532       1223333332 2456899999999999999999843

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6.2e-10  Score=63.06  Aligned_cols=73  Identities=18%  Similarity=0.253  Sum_probs=49.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      .++.+.|.. +.|.+.+.||+ ++..+..      ....++.....+ +...|.|.+++++|+|.|+|.+.+   ....+
T Consensus        16 ~~v~l~C~v-~~p~~~v~W~k-~~~~~~~------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~a   83 (90)
T d1x44a1          16 ERVELECEV-SEDDANVKWFK-NGEEIIP------GPKSRYRIRVEG-KKHILIIEGATKADAAEYSVMTTG---GQSSA   83 (90)
T ss_dssp             EEEEEEEEC-SSSSCCCEEEE-TTEECCC------STTCSEEEEEET-TEEEEEEEEECTTTCSEEEEEETT---EEEEE
T ss_pred             CcEEEEEEE-CCCCceEEEEE-eecccCC------CCCccEEEEEeC-CccEEEECccccccCEEEEEEEec---ceEEE
Confidence            467788876 56889999999 5554421      122334444332 456899999999999999999844   34455


Q ss_pred             EEEEE
Q psy16425         83 YLEVV   87 (163)
Q Consensus        83 ~l~v~   87 (163)
                      .|.|.
T Consensus        84 ~l~V~   88 (90)
T d1x44a1          84 KLSVD   88 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66654

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.3e-10  Score=65.66  Aligned_cols=75  Identities=19%  Similarity=0.185  Sum_probs=49.4

Q ss_pred             eeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425          4 RMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV   81 (163)
Q Consensus         4 ~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~   81 (163)
                      .+++.|.. .+.|.+.|.||+.+.......     ....++.... +    +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus        19 ~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~-----~~~~~~~~~~-~----~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1          19 IDVRPCPLNPNEHKGTITWYKDDSKTPVST-----EQASRIHQHK-E----KLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             CEEECCCCCGGGCSSEEEEECSSTTSBCCC-----CTTSSEEEET-T----EEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEEEeeCCCCCCCceEEEEECCccccccc-----ccceEEeccC-C----EEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            35677755 468999999999543322110     1223333322 2    8999999999999999999776 344455


Q ss_pred             EEEEEEc
Q psy16425         82 GYLEVVV   88 (163)
Q Consensus        82 ~~l~v~~   88 (163)
                      +.|.|..
T Consensus        89 ~~L~V~~   95 (101)
T d1iray1          89 ISAKFVE   95 (101)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            6676654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.08  E-value=4.9e-10  Score=63.35  Aligned_cols=66  Identities=17%  Similarity=0.234  Sum_probs=45.3

Q ss_pred             eeEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceE
Q psy16425          4 RMLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQ   80 (163)
Q Consensus         4 ~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~   80 (163)
                      .+.|.|... +.|.+.+.||+ ++..+....             ..    ..|.|.+++.+|+|.|.|.+.+...  .+.
T Consensus        19 ~v~L~C~~~~~~p~~~~~W~k-ng~~~~~~~-------------~~----~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~   80 (89)
T d1fnla2          19 PIHLRCHSWKNTALHKVTYLQ-NGKDRKYFH-------------HN----SDFHIPKATLKDSGSYFCRGLVGSKNVSSE   80 (89)
T ss_dssp             CEEEEEEECTTCCCEEEEEEE-TTEEEEEEE-------------EC----CCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             eEEEEEEecCCCCCcEEEEEE-cccccceec-------------cc----cccEECccceeccceEEEEEEeCCCCeEEe
Confidence            578888765 56777899999 665543211             11    1689999999999999999977532  233


Q ss_pred             eEEEEEE
Q psy16425         81 VGYLEVV   87 (163)
Q Consensus        81 ~~~l~v~   87 (163)
                      .+.|.|.
T Consensus        81 ~v~itV~   87 (89)
T d1fnla2          81 TVNITIT   87 (89)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            4555554

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.08  E-value=4.9e-11  Score=67.64  Aligned_cols=66  Identities=24%  Similarity=0.453  Sum_probs=51.2

Q ss_pred             CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425         90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      |.+...+. ....+.+|+++.|.|.+.|.|.|.+.|++++.++.. .+....+..|.|.+++++|.+.
T Consensus         3 P~f~~~p~-~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~-~~~~~~~~~L~i~~v~~~d~G~   68 (89)
T d1biha4           3 PKYEQKPE-KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-GRATVTDSGLVIKGVKNGDKGY   68 (89)
T ss_dssp             EEEEECCC-SEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS-SSEEEETTEEEESSCCSTTCEE
T ss_pred             CeEEECCC-CCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc-ccEEEeeeeEEECCCChhhCEE
Confidence            44444332 345678999999999999999999999999998743 3444566779999999998764

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.07  E-value=4e-10  Score=63.63  Aligned_cols=68  Identities=13%  Similarity=0.126  Sum_probs=47.0

Q ss_pred             ceeEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ce
Q psy16425          3 ARMLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KS   79 (163)
Q Consensus         3 ~~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~   79 (163)
                      ..+.|.|... +.|.+.+.||| ++..+...      .           .+..|.|.+++.+|+|.|.|.+.+...  .+
T Consensus        16 ~~v~L~C~~~~~~p~~~~~W~k-~g~~~~~~------~-----------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S   77 (88)
T d2fcba2          16 ETIVLRCHSWKDKPLVKVTFFQ-NGKSKKFS------R-----------SDPNFSIPQANHSHSGDYHCTGNIGYTLYSS   77 (88)
T ss_dssp             CCEEEEEEEGGGCCCEEEEEEE-TTEEEEEE------S-----------SCCEEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CeEEEEEEecCCCCCcEEEEEe-eccccccc------c-----------cccccccCccCHHHCCeEEEEEEeCCCCEEe
Confidence            3578888875 45777899999 56554211      0           112799999999999999999977632  23


Q ss_pred             EeEEEEEEc
Q psy16425         80 QVGYLEVVV   88 (163)
Q Consensus        80 ~~~~l~v~~   88 (163)
                      ..+.|.|+.
T Consensus        78 ~~v~l~V~~   86 (88)
T d2fcba2          78 KPVTITVQA   86 (88)
T ss_dssp             CCEEEEECC
T ss_pred             eeEEEEEeC
Confidence            445666654

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.5e-10  Score=68.83  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=52.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEee--------------------eeeEEecCCeEEEEeCCCceEEEEEcccCC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTI--------------------QTHVITKNHRIGVTHSETKAWYLHIREVRE   62 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~--------------------~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~   62 (163)
                      ..+.|.|...+.|.|.|.|++.+.......                    .........|+...... ....|.|.+++.
T Consensus        25 ~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~  103 (130)
T d1gxea_          25 NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK-DRSIFTVEGAEK  103 (130)
T ss_dssp             SCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET-TEEEEECSCCCT
T ss_pred             CeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECC-CEEEEEECcCCh
Confidence            367889999999999999999542211000                    00001112334433322 456899999999


Q ss_pred             CCCeEEEEEEEeC-CCceEeEEEEE
Q psy16425         63 SDRGWYMCQVNTD-PMKSQVGYLEV   86 (163)
Q Consensus        63 ~d~G~Y~C~~~~~-~~~~~~~~l~v   86 (163)
                      +|+|.|+|.+.|. |.....+.|.|
T Consensus       104 ~D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_         104 EDEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             TTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             hcCEEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999776 44444555554

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.06  E-value=1.2e-10  Score=66.97  Aligned_cols=62  Identities=13%  Similarity=0.212  Sum_probs=45.6

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ++.|.|...+.|.|.|.|++ ++..+..      ....++.....    ..|.|..++.+|+|.|+|.+.|..
T Consensus        24 ~v~l~C~~~g~P~p~v~W~~-ng~~i~~------~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~N~~   85 (97)
T d1cs6a1          24 KVTLTCRARANPPATYRWKM-NGTELKM------GPDSRYRLVAG----DLVISNPVKAKDAGSYQCVATNAR   85 (97)
T ss_dssp             EEEECCEEEEESCCEEEEEE-TTEECCC------STTSSEEEETT----EEEEESCCHHHHCEEEEEEEEETT
T ss_pred             eEEEEEEEEEeCCCEEEEEE-eeeeccC------CCCceEEeeee----eEEEEecccccCCEEEEEEEEECC
Confidence            58899999999999999999 5555421      11223333222    268889999999999999998773

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4e-10  Score=63.76  Aligned_cols=70  Identities=14%  Similarity=0.205  Sum_probs=49.1

Q ss_pred             eeEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceE
Q psy16425          4 RMLIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQ   80 (163)
Q Consensus         4 ~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~   80 (163)
                      .+.|.|...+ .+...+.||| ++..+..        .         .....|.|.+++.+|+|.|.|.+.+...  .+.
T Consensus        17 ~v~L~C~~~~~~~~~~~~w~k-~g~~~~~--------~---------~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~   78 (89)
T d1f2qa2          17 PLFLRCHGWRNWDVYKVIYYK-DGEALKY--------W---------YENHNISITNATVEDSGTYYCTGKVWQLDYESE   78 (89)
T ss_dssp             CEEEEEEEGGGCCEEEEEEEE-TTEECCS--------C---------CCSSEEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             EEEEEEEecCCCCCeEEEEEE-eeecccc--------c---------cccceEEEeeeeeecCcEEEEEEEeCCCCeEee
Confidence            5778887744 4667999999 5554411        0         0112799999999999999999977632  345


Q ss_pred             eEEEEEEcCCc
Q psy16425         81 VGYLEVVVPPD   91 (163)
Q Consensus        81 ~~~l~v~~~p~   91 (163)
                      .+.|.|..+|+
T Consensus        79 ~v~i~V~~~Pr   89 (89)
T d1f2qa2          79 PLNITVIKAPR   89 (89)
T ss_dssp             CEEEEEECSCC
T ss_pred             eEEEEEEeCCC
Confidence            56788887764

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.5e-10  Score=65.99  Aligned_cols=79  Identities=13%  Similarity=0.153  Sum_probs=49.9

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEE----ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVI----TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ..++.|.|.. ..|.+.|.|++. +..+........    ....|..+..   .+++|.|.+++++|+|.|.|.+.+. .
T Consensus        10 G~sVtl~c~~-~~p~~~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~sL~I~~l~~~DsG~Y~c~~~n~-~   83 (93)
T d1ccza1          10 YGNVTFHVPS-NVPLKEVLWKKQ-KDKVAELENSEFRAFSSFKNRVYLDT---VSGSLTIYNLTSSDEDEYEMESPNI-T   83 (93)
T ss_dssp             TCCEEECCCC-SSCCSCEEEEET-TEEEEEEETTEEEECGGGTTSEEECT---TTCCEEECSCCGGGCEEEEEECTTC-C
T ss_pred             CCCEEEEecC-CCCCcEEEEEEe-ccccceeeecceeeCCCccceEEEcC---CeeEEEEEecChhhCEEEEEEEECC-C
Confidence            4578888865 578899999994 444432211111    1223444322   3458999999999999999998443 3


Q ss_pred             ceEeEEEEE
Q psy16425         78 KSQVGYLEV   86 (163)
Q Consensus        78 ~~~~~~l~v   86 (163)
                      .+..+.|.|
T Consensus        84 ~t~~~~l~V   92 (93)
T d1ccza1          84 DTMKFFLYV   92 (93)
T ss_dssp             SCEEEEEEE
T ss_pred             cEEEEEEEE
Confidence            344455544

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.2e-09  Score=63.00  Aligned_cols=80  Identities=19%  Similarity=0.256  Sum_probs=50.3

Q ss_pred             ceeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEEEeC-CCce
Q psy16425          3 ARMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQVNTD-PMKS   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~-~~~~   79 (163)
                      ..+.|.|...+.|.+ .+.|++.+........   .....++.+.... ....|.|.++. .+|+|.|.|.+.|. +...
T Consensus        18 ~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~---~~~~~~~~~~~~~-~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~   93 (101)
T d3b5ha1          18 ETAMLVCKSESVPPVTDWAWYKITDSEDKALM---NGSESRFFVSSSQ-GRSELHIENLNMEADPGQYRCNGTSSKGSDQ   93 (101)
T ss_dssp             SCEEEEEECCCSSCCCEEEEEECCSSSCEECC---TTGGGTEEEEEET-TEEEEEECSCCTTTSSEEEEEEEEETTEEEE
T ss_pred             CeEEEEEEEEecCCeeEEEEEeccceeeeecc---cCCCceEEEEeCC-CEEEEEEeccccccCCEEEEEEEEECCCEEE
Confidence            468889999988877 7999995422211100   0122344444333 34589999998 57999999999876 3334


Q ss_pred             EeEEEEE
Q psy16425         80 QVGYLEV   86 (163)
Q Consensus        80 ~~~~l~v   86 (163)
                      ..+.|.|
T Consensus        94 ~~~~L~V  100 (101)
T d3b5ha1          94 AIITLRV  100 (101)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4444444

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.4e-10  Score=63.45  Aligned_cols=65  Identities=14%  Similarity=0.137  Sum_probs=44.2

Q ss_pred             ceeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--e
Q psy16425          3 ARMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--S   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~   79 (163)
                      ..+.|.|...+.|.| .|.||+ ++..+...        .          ...+.|.....+|+|.|+|.+.|....  +
T Consensus        17 ~~~~l~C~~~g~P~P~~i~W~k-~g~~i~~~--------~----------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S   77 (85)
T d1rhfa2          17 APFQLSCEAVGPPEPVTIVWWR-GTTKIGGP--------A----------PSPSVLNVTGVTQSTMFSCEAHNLKGLASS   77 (85)
T ss_dssp             CCEEEEEEEECSSSCCEEEEEE-TTEECSCS--------E----------ESSEEEEECCCSSCEEEEEEEEETTEEEEC
T ss_pred             CEEEEEEEEecCCcceEEEEEE-CCEECCCC--------C----------CcceEEecCCccccEEEEEEEEcCCCcEEE
Confidence            468899999999987 899999 56544210        0          013456666678999999999887432  3


Q ss_pred             EeEEEEE
Q psy16425         80 QVGYLEV   86 (163)
Q Consensus        80 ~~~~l~v   86 (163)
                      ..+.|.|
T Consensus        78 ~~~~v~V   84 (85)
T d1rhfa2          78 RTATVHL   84 (85)
T ss_dssp             CCEEEEE
T ss_pred             EEEEEEE
Confidence            3455544

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=3.6e-10  Score=66.17  Aligned_cols=70  Identities=16%  Similarity=0.215  Sum_probs=49.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCc----eEEeee---ee---EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQ----TILTIQ---TH---VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~----~~~~~~---~~---~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .+++|.|...+.....+.|+|....    .+....   ..   .....+|..+..++    +|.|.+++.+|+|.|+|.+
T Consensus        15 ~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng----SL~I~~v~~~D~G~Y~c~v   90 (107)
T d1l6za1          15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG----SLLFQMITMKDMGVYTLDM   90 (107)
T ss_dssp             CCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS----CEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc----cEEEcCCCchhCEEEEEEE
Confidence            4799999888888899999994311    111110   00   11235688777655    8999999999999999999


Q ss_pred             EeCC
Q psy16425         73 NTDP   76 (163)
Q Consensus        73 ~~~~   76 (163)
                      .+..
T Consensus        91 ~~~~   94 (107)
T d1l6za1          91 TDEN   94 (107)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            6553

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=1.2e-09  Score=62.85  Aligned_cols=81  Identities=15%  Similarity=0.242  Sum_probs=50.6

Q ss_pred             cceeEEEeeee--ccCCCEEEEEEcCCceEEeee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-C
Q psy16425          2 AARMLIEIGEM--LMAESTVAWLRVDTQTILTIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-P   76 (163)
Q Consensus         2 ~~~~~~~~~~~--~~~~~~i~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~   76 (163)
                      ...+.|.|...  ......|.|++ ++..+....  .......+|.....++    +|.|.+++.+|+|.|+|.+.+. +
T Consensus        10 G~sV~L~~~~~~~~~~i~~I~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~ng----SL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1          10 GHGINLNIPNFQMTDDIDEVRWER-GSTLVAEFKRKMKPFLKSGAFEILANG----DLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             TSCEEECCTTCCCCTTEEEEEEEE-TTEEEEEEETTSCCEESSTTEEECTTS----CEEESSCCGGGCEEEEEEEEETTC
T ss_pred             CCCEEEECCCCCCccchheeeeec-cccceeEEccCCccccCCCeEEECCCc----cEEEeCCCHHHCEEEEEEEEeCCC
Confidence            45688888543  33345899999 444443221  1222344555555444    8999999999999999999655 3


Q ss_pred             Cc--eEeEEEEEE
Q psy16425         77 MK--SQVGYLEVV   87 (163)
Q Consensus        77 ~~--~~~~~l~v~   87 (163)
                      ..  ...+.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            33  334445543

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.02  E-value=2.7e-10  Score=65.08  Aligned_cols=63  Identities=17%  Similarity=0.233  Sum_probs=44.6

Q ss_pred             ceeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          3 ARMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ..+.|.|...+.|.+ .|.|++ ++..+..       ...+.....   .+.+|.|.+++.+|+|.|+|.+.|..
T Consensus        18 ~~~~l~C~~~g~p~p~~v~W~~-~g~~l~~-------~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1          18 NPTVLECIIEGNDQGVKYSWKK-DGKSYNW-------QEHNAALRK---DEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             SCEEECCCEESCCSSCEEEEEE-SSSBCCT-------TTTTEEECT---TSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CeEEEEEEecCCCCeeEEEEEe-eeeeeee-------ecceeeecc---cceEEEEeccChhcCeEEEEEEEeCC
Confidence            357888999988865 799999 5555421       112222221   12379999999999999999998774

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.01  E-value=3.2e-10  Score=65.16  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=51.4

Q ss_pred             CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425         90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      |.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+........    +...|.|.+++.+|.+.
T Consensus         2 P~f~~~p--~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   71 (97)
T d1koaa1           2 PRFIVKP--YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGE   71 (97)
T ss_dssp             CEEEECC--CCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSC
T ss_pred             CEEEEeC--CCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEE
Confidence            4444433  356788999999999999999999999999999866544432    33469999999999864

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=7.8e-11  Score=68.20  Aligned_cols=69  Identities=22%  Similarity=0.489  Sum_probs=49.8

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce------EEeceEEEEcchhhhHhh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~------~~~~~l~i~~v~~~~~~~  157 (163)
                      ||.+...+......+..|+++.|.|.+.|.|.|.+.|++++..+.......      ...+.|.|.+++.+|.+.
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   77 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAE   77 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEE
Confidence            455544333223456789999999999999999999999998875442221      144689999999999763

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.99  E-value=4.2e-10  Score=65.64  Aligned_cols=62  Identities=18%  Similarity=0.236  Sum_probs=43.6

Q ss_pred             eeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .+.|.|.. .+.|.+.|.|++ ++..+..      ....+......   +.+|.|.+++.+|+|.|+|.+.|.
T Consensus        21 ~~~l~C~~~~~~p~~~v~W~k-~g~~~~~------~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~   83 (105)
T d1cs6a2          21 GVMFTCSPPPHYPALSYRWLL-NEFPNFI------PADGRRFVSQT---TGNLYIAKTEASDLGNYSCFATSH   83 (105)
T ss_dssp             CEEECCCCCSEESCCEEEEEE-SSTTCBC------CCCSSEEECTT---TCCEEESSCCGGGCEEEEEEEEEE
T ss_pred             eEEEEEEccCCCCCCEEEEEE-eeccccc------cccceeeeecC---CCEEeecccccccCcEEEEEEEEC
Confidence            57888876 688999999999 4443311      12233322221   237999999999999999999765

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.4e-10  Score=66.06  Aligned_cols=61  Identities=10%  Similarity=0.060  Sum_probs=44.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCe-EEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRG-WYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~~~   75 (163)
                      .++.|.|...+.|.|.|.|++. +..+....       .    .........|.|.+++.+|.| .|+|.+.|.
T Consensus        18 ~~v~l~C~~~g~P~p~v~W~~~-~~~~~~~~-------~----~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1          18 DDVLLRCQVEGRGLEQAGWILT-ELEQSATV-------M----KSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEEEEECSSCCCCCEEES-CCCSSEEE-------C----CCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CEEEEeeeccCCCCcEEEEEEC-Cceeeeee-------e----eeeeccceeEEEccccccccceEEEEEEEcC
Confidence            4688999999999999999994 43331110       0    011123458999999999999 699999876

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.1e-09  Score=62.65  Aligned_cols=76  Identities=16%  Similarity=0.059  Sum_probs=47.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEE-cCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--e
Q psy16425          3 ARMLIEIGEMLMAESTVAWLR-VDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--S   79 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~   79 (163)
                      ..+.+.|...+.|.|.+.|++ .++......        .+...........+|.|.++..+|+|.|+|.+.|....  +
T Consensus        17 ~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   88 (96)
T d2c9aa1          17 QFATFQCSAIGRTVAGDRLWLQGIDVRDAPL--------KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGIS   88 (96)
T ss_dssp             SCEEEEEEEESCCCSSCEEEEEETTBCCCCE--------EEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             CEEEEEEEEeecCCCcEEEEEeeeeeeeecC--------CceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEE
Confidence            468899999998877665543 222222111        11111122223347999999999999999999887433  3


Q ss_pred             EeEEEEE
Q psy16425         80 QVGYLEV   86 (163)
Q Consensus        80 ~~~~l~v   86 (163)
                      ..+.|.|
T Consensus        89 ~~a~L~V   95 (96)
T d2c9aa1          89 NYAELVV   95 (96)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            3356655

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.97  E-value=2e-10  Score=65.56  Aligned_cols=67  Identities=18%  Similarity=0.227  Sum_probs=53.3

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      +|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+........    ....|.|.++..+|++.
T Consensus         2 ~P~i~~~~--~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   72 (93)
T d1wiua_           2 KPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGN   72 (93)
T ss_dssp             CCEECCCC--CEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEE
T ss_pred             CCeEEeCC--CcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEE
Confidence            45555433  467899999999999999999999999999988876655542    33579999999999764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=8.2e-09  Score=61.78  Aligned_cols=89  Identities=18%  Similarity=0.153  Sum_probs=54.3

Q ss_pred             cceeEEEeeee---ccCCCEEEEEEcCCceEE-ee-eeeE------EecCCeEEEEeCC--CceEEEEEcccCCCCCeEE
Q psy16425          2 AARMLIEIGEM---LMAESTVAWLRVDTQTIL-TI-QTHV------ITKNHRIGVTHSE--TKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         2 ~~~~~~~~~~~---~~~~~~i~W~k~~~~~~~-~~-~~~~------~~~~~r~~~~~~~--~~~~~L~i~~v~~~d~G~Y   68 (163)
                      ..++.|.|...   ......|.|++.+..... .. ....      .....|..+....  .++++|.|.+++.+|+|.|
T Consensus        17 G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   96 (126)
T d1pkoa_          17 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGY   96 (126)
T ss_dssp             TSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhHCeEE
Confidence            35788888743   334467999985433221 11 1111      1123455555443  3578999999999999999


Q ss_pred             EEEEEeC-CCceEeEEEEEEcCC
Q psy16425         69 MCQVNTD-PMKSQVGYLEVVVPP   90 (163)
Q Consensus        69 ~C~~~~~-~~~~~~~~l~v~~~p   90 (163)
                      .|.+.+. +.....+.|.|..|+
T Consensus        97 ~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          97 TCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             EEEEEETTEEEEEEEEEEEECTT
T ss_pred             EEEEEECCCEEEEEEEEEEeCCC
Confidence            9999665 233445567776543

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.94  E-value=2e-10  Score=65.28  Aligned_cols=57  Identities=26%  Similarity=0.446  Sum_probs=45.9

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.|.|.|.+.|+++++.....  ....++.|.|.+++.+|.+.
T Consensus        13 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~--~~~~~~~L~I~~v~~~D~G~   69 (91)
T d1cs6a3          13 ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGT   69 (91)
T ss_dssp             SEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC--CSBSSSEEEECSCCGGGCEE
T ss_pred             CcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE--eeeeeeEEEeCCCCccCCEE
Confidence            3677889999999999999999999999987654222  23456789999999999763

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.94  E-value=5.8e-10  Score=64.63  Aligned_cols=67  Identities=19%  Similarity=0.300  Sum_probs=52.4

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-----EeceEEEEcchhhhHhh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~~  157 (163)
                      +|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++..+........     ....|.|.+++.+|.+.
T Consensus         8 ~P~f~~~~--~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   79 (102)
T d1fhga_           8 KPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK   79 (102)
T ss_dssp             EEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEE
T ss_pred             CCeEEcCC--CcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEE
Confidence            34444433  356788999999999999999999999999999876655442     23579999999998763

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.94  E-value=5.6e-10  Score=64.22  Aligned_cols=66  Identities=14%  Similarity=0.278  Sum_probs=51.1

Q ss_pred             CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE---E--eceEEEEcchhhhHhh
Q psy16425         90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE---D--FPFFKRTKKKKKKKKK  157 (163)
Q Consensus        90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~---~--~~~l~i~~v~~~~~~~  157 (163)
                      |.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++++..+........   .  ...|+|.+++.+|.+.
T Consensus         5 P~f~~~~--~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   75 (98)
T d1g1ca_           5 PKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSAS   75 (98)
T ss_dssp             EEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CeEecCC--CcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEE
Confidence            4444433  356788999999999999999999999999999876655432   2  2379999999998763

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=2.3e-10  Score=65.19  Aligned_cols=59  Identities=20%  Similarity=0.413  Sum_probs=49.3

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE---EeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE---DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~---~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.|.|.|.+.|+++++.+........   .++.|.|.++..+|.++
T Consensus         9 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~   70 (92)
T d1epfa2           9 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT   70 (92)
T ss_dssp             SSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEE
T ss_pred             CCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEE
Confidence            367889999999999999999999999999998866654432   44679999999999864

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.9e-10  Score=65.13  Aligned_cols=71  Identities=11%  Similarity=0.064  Sum_probs=45.3

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCC-----CceEEEEEcccCCCCCe-EEEEEEEeC
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSE-----TKAWYLHIREVRESDRG-WYMCQVNTD   75 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~L~i~~v~~~d~G-~Y~C~~~~~   75 (163)
                      ..++.|.|...+.|.|.|.|++ ++..+.........  .........     .....|.|.+++.+|.| .|+|.+.|.
T Consensus        17 G~~v~l~C~v~g~P~p~i~W~~-~g~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~   93 (107)
T d1iray3          17 GSQIQLICNVTGQLSDIAYWKW-NGSVIDEDDPVLGE--DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT   93 (107)
T ss_dssp             TCCEEEEEEEEECTTCEEEEEE-TTEECCTTCSSEEE--EEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECS
T ss_pred             CCEEEEEEEeccCCCCeEEEEE-CCcccccccceeee--eeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeC
Confidence            4579999999999999999999 55443211100000  000000000     01247999999999999 599999776

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1e-10  Score=68.07  Aligned_cols=69  Identities=19%  Similarity=0.252  Sum_probs=44.4

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEe-cCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVIT-KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .++.|.|.. .+.|.+.+.|++ ++..+......... ...+...   ......|.|.+++.+|+|.|+|.+.|.
T Consensus        18 ~~v~l~C~~~~g~p~p~v~W~~-~~~~i~~~~~~~~~~~~~~~~~---~~~~~~l~I~~v~~~D~G~Y~C~a~N~   88 (104)
T d1nbqa2          18 NRAVLTCSEQDGSPPSEYTWFK-DGIVMPTNPKSTRAFSNSSYVL---NPTTGELVFDPLSASDTGEYSCEARNG   88 (104)
T ss_dssp             SCEEECCCCCSCBSCCEEEEEE-TTCCCCSCSSSSSSCTTCCCCC---CTTTCCEEESSCCGGGCCCEEEEEECS
T ss_pred             CcEEEEEEeecCCCCCEEEEEE-CCEEccCCCceeEEeeCCcEEE---eecccceEECCCCcccCcEEEEEEEEC
Confidence            468888876 479999999999 45444221111000 0111100   012347999999999999999999876

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.9e-10  Score=63.73  Aligned_cols=59  Identities=14%  Similarity=0.153  Sum_probs=49.1

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.|.|.|.+.|++++..+....+...    +...|.|.+++++|++.
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   70 (101)
T d2cqva1           8 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGC   70 (101)
T ss_dssp             CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEE
T ss_pred             CcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEE
Confidence            366788999999999999999999999999998866655442    34579999999998763

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.6e-10  Score=64.89  Aligned_cols=66  Identities=15%  Similarity=0.132  Sum_probs=49.8

Q ss_pred             CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce--EEeceEEEEcchhhhHhh
Q psy16425         90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ--EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~--~~~~~l~i~~v~~~~~~~  157 (163)
                      |.+...+.  ...+.+|+++.|.|.+.|.|.|.+.|++++..+.......  .....|.|.+++.+|.++
T Consensus         3 P~i~~~~~--~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~   70 (92)
T d2ifga1           3 PTLKVQVP--NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRK   70 (92)
T ss_dssp             CEEEEECC--SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTC
T ss_pred             CEEEEeCC--CEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccce
Confidence            44444332  4567899999999999999999999999987764432222  355689999999999874

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.91  E-value=3e-10  Score=64.25  Aligned_cols=70  Identities=16%  Similarity=0.121  Sum_probs=48.9

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeEE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGY   83 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~   83 (163)
                      .+.+.|.. +.|.+.+.|++ ++..+        ....++.....+ +..+|.|.+++.+|+|.|+|.+.+.   ...+.
T Consensus        18 ~~~~~c~v-s~p~~~v~W~k-~g~~i--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~n~---~~sa~   83 (89)
T d1tiua_          18 TAHFEIEL-SEPDVHGQWKL-KGQPL--------TASPDCEIIEDG-KKHILILHNCQLGMTGEVSFQAANA---KSAAN   83 (89)
T ss_dssp             CCCEEEBC-SSSSCCCBCCS-SSCCC--------CSSSSCEEEECS-SCEEEECCSCCSCCCSEECCBCSSC---BCCEE
T ss_pred             cEEEEEEE-CCCCcEEEEEE-eeeec--------ccceeEEEEeec-eeEEEEEcCCChhcCEEEEEEECce---EEEEE
Confidence            56677765 57889999999 66655        234555555543 3458999999999999999998543   23345


Q ss_pred             EEEE
Q psy16425         84 LEVV   87 (163)
Q Consensus        84 l~v~   87 (163)
                      |.|.
T Consensus        84 l~V~   87 (89)
T d1tiua_          84 LKVK   87 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.2e-09  Score=61.92  Aligned_cols=59  Identities=17%  Similarity=0.430  Sum_probs=47.3

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce------EEeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~------~~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.+.|.|.+.|++++..+.......      .....|+|.+++++|+++
T Consensus         4 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   68 (91)
T d1rhfa1           4 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR   68 (91)
T ss_dssp             EEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEE
T ss_pred             eeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEE
Confidence            36778899999999999999999999999998875443322      133578999999999764

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.90  E-value=4.6e-10  Score=64.49  Aligned_cols=58  Identities=17%  Similarity=0.312  Sum_probs=47.7

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce---E--EeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ---E--DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~---~--~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+.|+|.|.+.|++++.++.......   .  ....|.|.+++.+|.+.
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   76 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN   76 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEE
Confidence            3567899999999999999999999999999986654332   1  34689999999999864

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.2e-09  Score=60.36  Aligned_cols=72  Identities=18%  Similarity=0.265  Sum_probs=48.9

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEE-----ecCCeEEEEeCC--CceEEEEEcccCCCCCeEEEEEEE
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVI-----TKNHRIGVTHSE--TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~-----~~~~r~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      +..+.|.|.........+.|++.....+........     ...+|+......  .++++|.|.+++++|+|.|.|.+.
T Consensus         9 G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~   87 (97)
T d2nxyb1           9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVE   87 (97)
T ss_dssp             TSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEET
T ss_pred             CCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEEEEe
Confidence            357899999888888899999965433322221111     123455443322  357789999999999999999994

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.6e-09  Score=60.50  Aligned_cols=51  Identities=14%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ..+.+|+++.|.|.+.|.|.|.+.|++++..+.      .++..|+|.+++++|++.
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~------~~~~~l~i~~v~~~DsG~   59 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------QGGKTLSVSQLELQDSGT   59 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEE------EESSEEEESSCCGGGCEE
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccce------eeeeeeeeeecccccccE
Confidence            357899999999999999999999999876543      345678999999998763

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=2.1e-09  Score=60.55  Aligned_cols=58  Identities=17%  Similarity=0.304  Sum_probs=47.5

Q ss_pred             CcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+. +.|.|.+.|++++..+... .....++.|+|.+++.+|++.
T Consensus        10 ~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~   68 (89)
T d1gl4b_          10 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-RAMDFNGILTIRNVQPSDAGT   68 (89)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT-TEEEETTEEEECSCCGGGCEE
T ss_pred             CeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc-ccEeeceEEEEecCCcccCEE
Confidence            356788999999999997 6888999999998876544 334567889999999999864

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.82  E-value=2.9e-09  Score=61.05  Aligned_cols=58  Identities=10%  Similarity=0.151  Sum_probs=47.7

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE------EeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE------DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~------~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++..+........      .+..|.|.+++++|.+.
T Consensus        12 ~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   75 (97)
T d1biha3          12 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGV   75 (97)
T ss_dssp             SEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEE
T ss_pred             CEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEE
Confidence            57788999999999999999999999999998865433321      44689999999999763

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.9e-09  Score=60.92  Aligned_cols=58  Identities=14%  Similarity=0.279  Sum_probs=44.8

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++..+....... ...+.|.|.+++++|.++
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~   68 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHS   68 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccce
Confidence            4456789999999999999999999999877653321111 244689999999999864

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.5e-09  Score=61.83  Aligned_cols=59  Identities=10%  Similarity=0.058  Sum_probs=47.1

Q ss_pred             CcEEEeCCCcEEEEeEeccCCC-CeEEEEECCeEEEecCCce-EEeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPK-PNITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.+.|+ +.+.|++++..+....+.. ..++.|.|.+|+.+|++.
T Consensus        14 ~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~   74 (93)
T d1n26a1          14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGN   74 (93)
T ss_dssp             TEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEE
T ss_pred             CCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEE
Confidence            3677888999999999998765 5899999998775443333 367889999999999863

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.80  E-value=2.2e-09  Score=61.17  Aligned_cols=65  Identities=18%  Similarity=0.396  Sum_probs=50.4

Q ss_pred             CcccccCCCCcEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCceE---EeceEEEEcchhhhHh
Q psy16425         90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQE---DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~---~~~~l~i~~v~~~~~~  156 (163)
                      |.+...+  ....+.+|+++.|.|.+.|.|.| .+.|+++|..+........   ..+.|.|.++..+|.+
T Consensus         3 P~i~~~p--~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G   71 (94)
T d1biha1           3 PVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEG   71 (94)
T ss_dssp             CEECCCC--SEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCE
T ss_pred             CEEEecC--CcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCe
Confidence            4554433  46788999999999999999876 6999999988755543332   4578999999999876

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.80  E-value=4e-10  Score=63.99  Aligned_cols=59  Identities=24%  Similarity=0.470  Sum_probs=48.2

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.|.|.|.+.|++++..+........    ....|.|.++..+|.+.
T Consensus         7 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   69 (91)
T d1tnna_           7 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGN   69 (91)
T ss_dssp             CCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEE
T ss_pred             cCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEE
Confidence            357789999999999999999999999999988765544332    45789999999988763

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.77  E-value=7e-09  Score=57.79  Aligned_cols=63  Identities=21%  Similarity=0.158  Sum_probs=42.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|...+.+.+.+.|++.++..+.        ..           ..+|.|.+++.+|+|.|+|.+.+. ..+..+
T Consensus        21 ~~vtL~C~~~~~~~~~~~~~~~~~~~~~--------~~-----------~~~l~i~~~~~~d~G~Y~C~a~~s-~~S~~v   80 (84)
T d1fnla1          21 DSVTLKCQGAYSPEDNSTQWFHNESLIS--------SQ-----------ASSYFIDAATVNDSGEYRCQTNLS-TLSDPV   80 (84)
T ss_dssp             CCEEEEEECCCBTTBCCCEEEETTEEEE--------SS-----------CSEEEESSCCGGGCEEEEEECSSS-CCCCCE
T ss_pred             CeEEEEEEeccCCCCeEEEEeeeceeee--------ec-----------ceeeEecCCcccCCEEEEEEccCC-CccccE
Confidence            3588999988888886555443554431        11           127999999999999999998543 334444


Q ss_pred             EEE
Q psy16425         83 YLE   85 (163)
Q Consensus        83 ~l~   85 (163)
                      .|.
T Consensus        81 ~L~   83 (84)
T d1fnla1          81 QLE   83 (84)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.75  E-value=1.5e-08  Score=59.45  Aligned_cols=67  Identities=13%  Similarity=0.176  Sum_probs=45.1

Q ss_pred             ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCe---EEEEEEEeC
Q psy16425          3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRG---WYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G---~Y~C~~~~~   75 (163)
                      ..+.|.|.. .+.|.|.+.|++.+......  ........++.....+    +|.|.+++..|+|   .|.|.+.|.
T Consensus        18 ~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~--~~~~~~~~~~~~~~~~----~L~i~~v~~~D~gd~g~Y~C~A~N~   88 (111)
T d1biha2          18 RPFQLDCVLPNAYPKPLITWKKRLSGADPN--ADVTDFDRRITAGPDG----NLYFTIVTKEDVSDIYKYVCTAKNA   88 (111)
T ss_dssp             EEEEECCCCCEEESCCEEEEEEEETTSCGG--GCCCCCCTTEEECTTS----CEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             CeEEEEEEcccCCCCCEEEEEeCCcccccc--ccceeeeeeecccccc----ccEEeeeEeeccCCceEEEEEEEeC
Confidence            368889975 89999999999954332210  0001122334444433    7999999999887   799999876

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.6e-09  Score=59.78  Aligned_cols=58  Identities=12%  Similarity=0.197  Sum_probs=44.5

Q ss_pred             CcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+. +.|.|.+.|.+.+.++... ......+.|+|.+++.+|++.
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~   69 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV-QSDTGRSVLTVRNASLSAAGT   69 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCE-EEESSEEEEEECSCCGGGCEE
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeee-eccCceeeEEcCccChhhCCc
Confidence            356788999999999885 7899999999887665211 111245789999999999864

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5.3e-08  Score=56.22  Aligned_cols=73  Identities=11%  Similarity=0.084  Sum_probs=46.3

Q ss_pred             ceeEEEeeeec-cCC--CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCc
Q psy16425          3 ARMLIEIGEML-MAE--STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMK   78 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~--~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~   78 (163)
                      ..+.|.|...+ .|.  +.+.|++ ++..+....            .........|.|..+..+|.|.|+|.+.|. +..
T Consensus        20 ~~~~L~C~v~g~~P~p~~~v~W~~-~~~~l~~~~------------~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~   86 (103)
T d1iama1          20 KQLTLRCQVEGGAPRAQLTVVLLR-GEKELKREP------------AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ   86 (103)
T ss_dssp             SEEEEEEEEECCBCGGGEEEEEEE-TTEEEEEEE------------CCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGG
T ss_pred             CEEEEEEEecCCCCCCceEEEEcc-ccccccccc------------cccccceEEEEEeeehhHCCCEEEEEEEeCCCCc
Confidence            46888888775 343  4688999 555542210            011123447899999999999999999775 333


Q ss_pred             eEeEEEEEEc
Q psy16425         79 SQVGYLEVVV   88 (163)
Q Consensus        79 ~~~~~l~v~~   88 (163)
                      .....+.+..
T Consensus        87 ~~~~~~~~s~   96 (103)
T d1iama1          87 GLELFENTSA   96 (103)
T ss_dssp             TSCEEEEECC
T ss_pred             cCeEeeeEcC
Confidence            3444444443

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.7e-10  Score=62.73  Aligned_cols=46  Identities=22%  Similarity=0.330  Sum_probs=36.0

Q ss_pred             CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec
Q psy16425         90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ  135 (163)
Q Consensus        90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~  135 (163)
                      |.+..........+.+|+.+.|.|.+.|+|.|.+.|++++..+...
T Consensus         3 P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~   48 (84)
T d2oz4a3           3 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI   48 (84)
T ss_dssp             EECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT
T ss_pred             CceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee
Confidence            4443332224678899999999999999999999999999876543

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.7e-08  Score=56.27  Aligned_cols=42  Identities=29%  Similarity=0.585  Sum_probs=34.1

Q ss_pred             CcccccCCCCcEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEE
Q psy16425         90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKP-NITWRREGGELI  133 (163)
Q Consensus        90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~  133 (163)
                      |.+...|  ....+.+|+++.|.|.+.|.|.| .+.|++|+..+.
T Consensus         2 P~f~~~P--~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~   44 (85)
T d1rhfa2           2 PFFTVEP--KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIG   44 (85)
T ss_dssp             CEEEECC--CCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECS
T ss_pred             CcEEEeC--CcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECC
Confidence            4444434  35778899999999999999988 899999998764

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.3e-08  Score=56.44  Aligned_cols=64  Identities=20%  Similarity=0.158  Sum_probs=40.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      ..+.|.|...+.|.+...|+..++..+.        ..           +..|.|.+++.+|+|.|.|.+.+ ...+..+
T Consensus        17 ~~v~L~C~~~~~~~~~~~~~~~~~~~~~--------~~-----------~~~l~i~~v~~~d~G~Y~C~a~~-s~~S~~v   76 (82)
T d1f2qa1          17 ENVTLTCNGNNFFEVSSTKWFHNGSLSE--------ET-----------NSSLNIVNAKFEDSGEYKCQHQQ-VNESEPV   76 (82)
T ss_dssp             CCEEEECCTTCC----CCEEEETTEECS--------CC-----------SSEEEECSCCGGGCEEEEEECTT-SSCCCCE
T ss_pred             CeEEEEEEEeeeeeecceeeeeeeeeee--------cc-----------cceeEECCCChhhCCcEEEEecC-CCCcccE
Confidence            3688999998888876555443554331        11           12799999999999999999854 3344455


Q ss_pred             EEEE
Q psy16425         83 YLEV   86 (163)
Q Consensus        83 ~l~v   86 (163)
                      .|.|
T Consensus        77 ~l~V   80 (82)
T d1f2qa1          77 YLEV   80 (82)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5555

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.5e-08  Score=58.65  Aligned_cols=59  Identities=17%  Similarity=0.329  Sum_probs=44.4

Q ss_pred             CcEEEeCCCcEEEEeEeccCC-CCeEEEEECCeEEEecCCc-eE--------EeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSP-KPNITWRREGGELIAQGNG-QE--------DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p-~p~v~W~~~~~~~~~~~~~-~~--------~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.|.| .|.++|++++..+...... ..        ....|.|.+++.+|.+.
T Consensus        11 ~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   79 (104)
T d2aw2a1          11 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGS   79 (104)
T ss_dssp             EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEE
T ss_pred             CeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCe
Confidence            356788999999999999998 5899999988765333221 11        22359999999999764

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.68  E-value=3e-08  Score=55.65  Aligned_cols=54  Identities=17%  Similarity=0.321  Sum_probs=42.7

Q ss_pred             cEEEeCCCcEEEEeEecc-CCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASG-SPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+.+ .|.+.+.|++++..+.....    ++.|.|.+++++|++.
T Consensus         9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~----~~~l~i~~v~~~dsG~   63 (88)
T d2fcba2           9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRS----DPNFSIPQANHSHSGD   63 (88)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESS----CCEEEETTCCGGGCEE
T ss_pred             CCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccccc----ccccccCccCHHHCCe
Confidence            345789999999999975 46678999999988754432    3569999999999863

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.7e-08  Score=57.20  Aligned_cols=57  Identities=16%  Similarity=0.252  Sum_probs=44.8

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----------------EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----------------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----------------~~~~l~i~~v~~~~~~  156 (163)
                      ...+..|+++.|.|.+.|.|.|.+.|++++..+........                ....|+|.+++.+|.+
T Consensus        11 ~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g   83 (107)
T d1iray3          11 TMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYK   83 (107)
T ss_dssp             EEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGS
T ss_pred             EEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCC
Confidence            45577899999999999999999999999987643322211                1257999999999976

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.66  E-value=6.7e-09  Score=59.44  Aligned_cols=51  Identities=24%  Similarity=0.352  Sum_probs=39.8

Q ss_pred             CCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE---EeceEEEEcchhhhHh
Q psy16425        106 GSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE---DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~---~~~~l~i~~v~~~~~~  156 (163)
                      ++++.|.|.+.|.|.|.+.|++++..+........   .+..|.|..+..+|.+
T Consensus        22 ~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G   75 (97)
T d1cs6a1          22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAG   75 (97)
T ss_dssp             CCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCE
T ss_pred             CCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCE
Confidence            47899999999999999999999998765543332   4456777778888865

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.6e-09  Score=59.25  Aligned_cols=56  Identities=14%  Similarity=0.228  Sum_probs=45.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce--EEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ--EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~--~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+.+ |+|.+.|.+++..+.......  ..++.|.|.+++.+|.+
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG   63 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSG   63 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCc
Confidence            467889999999999988 778999999998876554332  25568999999999976

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.8e-08  Score=57.31  Aligned_cols=57  Identities=11%  Similarity=0.203  Sum_probs=44.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCC-ceE----EeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN-GQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~-~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+. .|.|.+.|++++..+..+.. ...    ....|.|.+++.+|.+.
T Consensus        15 ~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   76 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA   76 (94)
T ss_dssp             EEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEE
T ss_pred             CEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEE
Confidence            45788999999999985 58999999999999866533 222    23579999999998763

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3e-08  Score=57.32  Aligned_cols=66  Identities=14%  Similarity=0.174  Sum_probs=48.0

Q ss_pred             EcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE---------EeceEEEEcchhhhHhh
Q psy16425         87 VVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE---------DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        87 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~---------~~~~l~i~~v~~~~~~~  157 (163)
                      +.+|.+.....     ...+....+.|.+.|+|.|.+.|++++..+........         ....|.|.+++.+|.++
T Consensus         2 ~~pP~it~~~~-----~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (103)
T d1wwbx_           2 HFAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCCCCCCCC-----CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             ccCCeeEEcCC-----CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCce
Confidence            45666654321     23467778999999999999999999998865443321         23579999999999875

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.5e-09  Score=60.16  Aligned_cols=67  Identities=16%  Similarity=0.256  Sum_probs=49.0

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEecCCceE-----------EeceEEEEcchhhhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQGNGQE-----------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~v~~~~~~  156 (163)
                      ||.+.....  ...+.+|+.+.|.|.+ .|.|.|.+.|++++..+........           ..+.|+|.+++.+|++
T Consensus         2 PP~~p~~~~--~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G   79 (104)
T d1nbqa2           2 PPSKPTVNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG   79 (104)
T ss_dssp             CCCCCCCCC--BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCC
T ss_pred             CCcccccCC--CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCc
Confidence            555544332  3457889999999998 5899999999999988754433221           2357899999999886


Q ss_pred             h
Q psy16425        157 K  157 (163)
Q Consensus       157 ~  157 (163)
                      .
T Consensus        80 ~   80 (104)
T d1nbqa2          80 E   80 (104)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.64  E-value=2.2e-08  Score=56.31  Aligned_cols=53  Identities=17%  Similarity=0.230  Sum_probs=42.1

Q ss_pred             EEEeCCCcEEEEeEecc-CCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425        101 MVIREGSNVTLKCAASG-SPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ..+.+|+++.|.|.+.+ .|.+.+.|++||..+...    ..+..|.|.+|+++|++.
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~----~~~~~l~I~~v~~~dsG~   65 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF----HHNSDFHIPKATLKDSGS   65 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE----EECCCEEESSCCGGGCEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEccccccee----ccccccEECccceeccce
Confidence            45789999999999875 566689999999887532    344678999999999864

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.6e-08  Score=56.13  Aligned_cols=58  Identities=19%  Similarity=0.351  Sum_probs=46.1

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce--E--E--eceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ--E--D--FPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~--~--~--~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+ +.|.|.+.|++++.++.......  .  +  ...|.|.+++.+|++.
T Consensus         8 ~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   71 (90)
T d1x44a1           8 EDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAE   71 (90)
T ss_dssp             CCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSE
T ss_pred             CCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEE
Confidence            46789999999999998 46889999999999886654432  1  2  2479999999999763

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=2e-08  Score=57.27  Aligned_cols=56  Identities=18%  Similarity=0.266  Sum_probs=45.5

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+.+ |++.+.|++++..+........  .++.|.|.+++++|.+
T Consensus        12 ~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G   69 (96)
T d1l6za2          12 NTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAG   69 (96)
T ss_dssp             CSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCE
T ss_pred             ceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhce
Confidence            456889999999999866 5689999999998866655543  4568999999999976

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=5e-08  Score=57.91  Aligned_cols=85  Identities=19%  Similarity=0.305  Sum_probs=50.6

Q ss_pred             ceeEEEeeeeccCC----CEEEEEEcCCce------EE-eeeeeEE-----ecCCeEEEEeCC--CceEEEEEcccCCCC
Q psy16425          3 ARMLIEIGEMLMAE----STVAWLRVDTQT------IL-TIQTHVI-----TKNHRIGVTHSE--TKAWYLHIREVRESD   64 (163)
Q Consensus         3 ~~~~~~~~~~~~~~----~~i~W~k~~~~~------~~-~~~~~~~-----~~~~r~~~~~~~--~~~~~L~i~~v~~~d   64 (163)
                      .++.|.|...+.+.    ..|.|++.....      .. .......     ...+|..+....  .++++|.|.+++.+|
T Consensus        20 ~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   99 (124)
T d1eaja_          20 ETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSD   99 (124)
T ss_dssp             SCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCGGG
T ss_pred             CcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEcccEEcc
Confidence            46888887643322    468899742211      11 1111111     224566665443  356789999999999


Q ss_pred             CeEEEEEEEeCC-CceEeEEEEEE
Q psy16425         65 RGWYMCQVNTDP-MKSQVGYLEVV   87 (163)
Q Consensus        65 ~G~Y~C~~~~~~-~~~~~~~l~v~   87 (163)
                      +|.|.|.+.+.. .....+.|.|.
T Consensus       100 ~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_         100 IGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEEEECCCeEEeEEEEEEE
Confidence            999999996553 33444455554

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=1.5e-07  Score=55.50  Aligned_cols=74  Identities=18%  Similarity=0.251  Sum_probs=45.5

Q ss_pred             cceeEEEeeee----ccCCCEEEEEEcCCc-----eEEee-eeeE-E----ecCCeEEEEeCC-CceEEEEEcccCCCCC
Q psy16425          2 AARMLIEIGEM----LMAESTVAWLRVDTQ-----TILTI-QTHV-I----TKNHRIGVTHSE-TKAWYLHIREVRESDR   65 (163)
Q Consensus         2 ~~~~~~~~~~~----~~~~~~i~W~k~~~~-----~~~~~-~~~~-~----~~~~r~~~~~~~-~~~~~L~i~~v~~~d~   65 (163)
                      ..++.|.|...    ......|.|++....     .+... .... .    ...+|+.+.... .++++|.|.+++.+|+
T Consensus        14 G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   93 (119)
T d1neua_          14 GSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDN   93 (119)
T ss_dssp             TSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGGGC
T ss_pred             CCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCCChHHC
Confidence            34678888632    233458999874311     11111 1111 1    124577765442 4678999999999999


Q ss_pred             eEEEEEEEeC
Q psy16425         66 GWYMCQVNTD   75 (163)
Q Consensus        66 G~Y~C~~~~~   75 (163)
                      |.|.|.+.+.
T Consensus        94 G~Y~C~v~~~  103 (119)
T d1neua_          94 GTFTCDVKNP  103 (119)
T ss_dssp             EEEEEEEEC-
T ss_pred             EEEEEEEEEC
Confidence            9999999654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=1.9e-08  Score=58.75  Aligned_cols=56  Identities=14%  Similarity=0.296  Sum_probs=41.7

Q ss_pred             EEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCceE------------EeceEEEEcchhhhHhh
Q psy16425        102 VIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQE------------DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       102 ~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~------------~~~~l~i~~v~~~~~~~  157 (163)
                      .+.+|+++.|.|.+. |.|.|.+.|++++..+........            ....|.|.+++.+|++.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   81 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE   81 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEE
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEE
Confidence            577899999999985 899999999999987644322110            23478999999999763

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.60  E-value=1e-08  Score=59.59  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=45.4

Q ss_pred             cEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEecCCce----EEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQGNGQ----EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~----~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+ .+.|.|.+.|++++..+.......    ...+.|.|.+++.+|.+.
T Consensus        13 ~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   75 (105)
T d1cs6a2          13 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGN   75 (105)
T ss_dssp             CEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEE
T ss_pred             CEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcE
Confidence            5779999999999997 689999999999987654332221    145679999999999763

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=7.7e-08  Score=55.82  Aligned_cols=64  Identities=14%  Similarity=0.097  Sum_probs=40.6

Q ss_pred             eeEEEeeeec---cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGEML---MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~~~---~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .+.|.|...+   .|.+.|.||+ ++..+...........       .......|.|.....+|.|.|+|.|.+.
T Consensus        19 ~v~l~C~v~g~~p~p~~~i~W~~-~~~~i~~~~~~~~~~~-------~~~~~s~l~~~~~~~d~g~~ytC~A~n~   85 (106)
T d1zxqa1          19 SFTIECRVPTVEPLDSLTLFLFR-GNETLHYETFGKAAPA-------PQEATATFNSTADREDGHRNFSCLAVLD   85 (106)
T ss_dssp             EEEEEEEECSCBCGGGEEEEEEE-TTEEEEEEECCSSTTC-------TTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             EEEEEEEEeCcccCCCceEEEEc-CCEEeeecccceEeec-------ccceeEEEEEeeehhcCCcEEEEEEEec
Confidence            5778888765   4667899999 6666543221111100       0112236778888888888999999765

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.2e-08  Score=57.18  Aligned_cols=58  Identities=10%  Similarity=0.154  Sum_probs=47.5

Q ss_pred             cEEEeCCCcEEEEe------EeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKC------AASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C------~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~  157 (163)
                      .+.+..|....|.|      .+.++|.|.+.|++|+.++....... ..++.|.|.+++.+|++.
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~   72 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGN   72 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEE
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcE
Confidence            45688899999999      56789999999999999986554333 467889999999999863

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.58  E-value=8e-08  Score=55.79  Aligned_cols=59  Identities=12%  Similarity=0.273  Sum_probs=42.1

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec----C--------Cc-----eEEeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ----G--------NG-----QEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~----~--------~~-----~~~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.|.|.|.+.|++++......    .        ..     ......|.|.++..+|.+.
T Consensus        13 ~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   88 (109)
T d2fdbp2          13 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGE   88 (109)
T ss_dssp             CCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEE
T ss_pred             CCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeE
Confidence            3678999999999999999999999999876432110    0        00     0134679999999998763

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.6e-09  Score=62.40  Aligned_cols=77  Identities=16%  Similarity=0.158  Sum_probs=47.2

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEe--CCC-ceEEEEEcccCCCC-CeEEEEEEEeC-C
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDTQTILTIQTHVITKNHRIGVTH--SET-KAWYLHIREVRESD-RGWYMCQVNTD-P   76 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~--~~~-~~~~L~i~~v~~~d-~G~Y~C~~~~~-~   76 (163)
                      .++.|.|...+. |.+.+.|++ ++..+....      ..++....  ... ....|.|.+++.+| +|.|+|.+.|. +
T Consensus        22 ~~~~l~C~v~~~~p~~~v~W~~-~~~~i~~~~------~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G   94 (115)
T d2crya1          22 EKGQIKCFIRSTPPPDRIAWSW-KENVLESGT------SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG   94 (115)
T ss_dssp             SCCCCCEEECCSSCCSEEEEES-SSCEECSEE------ETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSC
T ss_pred             CEEEEEEEeecCCCeeEEEEee-eeeeEeeee------eeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCC
Confidence            467788888774 566899998 454443221      12222221  111 22479999999999 69999999776 4


Q ss_pred             CceEeEEEEE
Q psy16425         77 MKSQVGYLEV   86 (163)
Q Consensus        77 ~~~~~~~l~v   86 (163)
                      ..+..+.|.|
T Consensus        95 ~~~~~~~L~V  104 (115)
T d2crya1          95 SDTEIIRLKE  104 (115)
T ss_dssp             EEEEEECCCC
T ss_pred             eEEEEEEEEE
Confidence            3344444444

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.58  E-value=3e-07  Score=52.06  Aligned_cols=71  Identities=20%  Similarity=0.287  Sum_probs=48.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---EEeeeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---ILTIQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~~~~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+... ..   +...........+|+...... ...++|.|.+++++|+|.|.|.+.
T Consensus         2 ~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           2 AIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             SCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEe
Confidence            467888887777778899998632 11   222222222334566655433 456899999999999999999874

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.56  E-value=3.7e-08  Score=54.84  Aligned_cols=63  Identities=19%  Similarity=0.229  Sum_probs=43.3

Q ss_pred             ceeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425          3 ARMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV   81 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   81 (163)
                      ..+.|.|...+.+.+ .+.|++ ++..+.        ..           ...|.|.+++.+|+|.|.|.+.+. ..+..
T Consensus        20 ~~v~L~C~~~~~~~~~~~~w~~-~g~~~~--------~~-----------~~~l~i~~v~~~dsG~Y~C~a~ns-~~S~~   78 (85)
T d2fcba1          20 DSVTLTCRGTHSPESDSIQWFH-NGNLIP--------TH-----------TQPSYRFKANNNDSGEYTCQTGQT-SLSDP   78 (85)
T ss_dssp             CEEEEEEECSSCCCTTCCEEEE-TTEECT--------TC-----------CSSEEEEECCGGGCEEEEEECTTS-BCCCC
T ss_pred             CeEEEEEEEeeccceeEEEeec-cccccc--------cc-----------ccceEEeeccccCCcEEEEECCCC-ccccc
Confidence            368888988777765 567777 555431        11           116899999999999999998543 33444


Q ss_pred             EEEEE
Q psy16425         82 GYLEV   86 (163)
Q Consensus        82 ~~l~v   86 (163)
                      +.|.|
T Consensus        79 v~l~V   83 (85)
T d2fcba1          79 VHLTV   83 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55555

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=7e-08  Score=55.84  Aligned_cols=67  Identities=15%  Similarity=0.235  Sum_probs=46.6

Q ss_pred             EEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce--------EEeceEEEEcchhhhHhh
Q psy16425         86 VVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ--------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        86 v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~--------~~~~~l~i~~v~~~~~~~  157 (163)
                      |+++|.+......     ..+....+.|.+.|+|.|.+.|++++..+.......        .....|.|.+++++|++.
T Consensus         2 V~~PP~i~~~~~~-----~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (105)
T d1wwca_           2 VYYPPRVVSLEEP-----ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN   76 (105)
T ss_dssp             CCCCCCCCCCCCC-----CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             EEcCCeeEEeCCC-----EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceE
Confidence            4567766543221     123445678899999999999999999876554332        133579999999999864

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=7.4e-08  Score=54.90  Aligned_cols=58  Identities=16%  Similarity=0.194  Sum_probs=42.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCC-CeEEEEECC-eEEEecCC-ceE-----EeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPK-PNITWRREG-GELIAQGN-GQE-----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~-~~~~~~~~-~~~-----~~~~l~i~~v~~~~~~~  157 (163)
                      ...+..|+++.|.|.+.|.|+ |.+.|++++ ..+..... ...     ....|.|.+++.+|++.
T Consensus         9 ~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   74 (97)
T d1epfa1           9 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGI   74 (97)
T ss_dssp             SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceE
Confidence            456789999999999999885 799999854 44433221 111     23579999999999763

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.3e-08  Score=57.81  Aligned_cols=59  Identities=19%  Similarity=0.237  Sum_probs=44.3

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCC------------ceEEeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN------------GQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~------------~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.|.|.|.+.|++++..+.....            ....++.|.|.+++.+|.+.
T Consensus        12 ~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (105)
T d1nbqa1          12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGT   82 (105)
T ss_dssp             SBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSE
T ss_pred             CeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceee
Confidence            355688999999999999999999999997654432211            11244679999999998763

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=6.6e-07  Score=51.86  Aligned_cols=73  Identities=11%  Similarity=0.256  Sum_probs=45.5

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcC-CceE----EeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVD-TQTI----LTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~-~~~~----~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.....  ....+.||+.. +...    ...........+|+.+... ..+.++|.|.+++++|+|.|.|.+..
T Consensus        12 ~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v~~   91 (108)
T d1hkfa_          12 QTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYR   91 (108)
T ss_dssp             CCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEEec
Confidence            367888875433  33467899853 2211    1111111223456655443 35789999999999999999999864


Q ss_pred             C
Q psy16425         75 D   75 (163)
Q Consensus        75 ~   75 (163)
                      .
T Consensus        92 ~   92 (108)
T d1hkfa_          92 P   92 (108)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.50  E-value=6.7e-09  Score=61.00  Aligned_cols=56  Identities=21%  Similarity=0.227  Sum_probs=43.0

Q ss_pred             EEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEecCCce--------EEeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQGNGQ--------EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~--------~~~~~l~i~~v~~~~~~  156 (163)
                      .++.+|+++.|.|.+ .|.|.|.+.|++++..+.......        ...+.|.|.+|+.+|.+
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~g   76 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVS   76 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCC
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccC
Confidence            346789999999997 799999999999876653332211        13578999999999875

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.49  E-value=4e-07  Score=53.41  Aligned_cols=73  Identities=23%  Similarity=0.331  Sum_probs=48.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c---eE-EeeeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q---TI-LTIQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~---~~-~~~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..+.|.|.........+.||+... .   .+ ............|+...... ...++|.|.+++++|+|.|.|.+...
T Consensus        16 ~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          16 KNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             CCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEEEEECS
T ss_pred             CCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccceeeecC
Confidence            468888987776778899998642 1   11 11111112233455555433 36789999999999999999998543

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.47  E-value=8e-09  Score=58.20  Aligned_cols=58  Identities=10%  Similarity=0.127  Sum_probs=47.5

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+ +.|.|.+.|+++|..+........    ....|.|.++..+|.+.
T Consensus         9 ~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~   70 (89)
T d1tiua_           9 YGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGE   70 (89)
T ss_dssp             CCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSE
T ss_pred             cCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEE
Confidence            46789999999999997 578999999999999877666553    33579999999998763

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.44  E-value=1.1e-07  Score=52.91  Aligned_cols=52  Identities=21%  Similarity=0.330  Sum_probs=41.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|+++.|.|.+.+.|.+ .+.|++++..+..      .+..|.|.+++.+|++.
T Consensus        13 ~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~------~~~~l~i~~v~~~dsG~   65 (85)
T d2fcba1          13 WINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT------HTQPSYRFKANNNDSGE   65 (85)
T ss_dssp             CSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT------CCSSEEEEECCGGGCEE
T ss_pred             CeEEcCCCeEEEEEEEeeccceeEEEeecccccccc------cccceEEeeccccCCcE
Confidence            4578899999999999998876 5889999877632      34568999999998763

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=5.9e-08  Score=55.78  Aligned_cols=59  Identities=19%  Similarity=0.295  Sum_probs=43.7

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec--C----------CceEEeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ--G----------NGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~--~----------~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.+.|.|.+.|++++......  .          +....++.|+|.+|+.+|.+.
T Consensus         9 ~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~   79 (102)
T d1f97a1           9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGE   79 (102)
T ss_dssp             SEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEE
T ss_pred             CcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEE
Confidence            4677899999999999999999999999865432111  0          011244679999999999763

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.4e-07  Score=52.95  Aligned_cols=53  Identities=15%  Similarity=0.177  Sum_probs=41.6

Q ss_pred             cEEEeCCCcEEEEeEeccC-CCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGS-PKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+++.|.|.+.+. |++.+.|+++|..+...    .....|.|.+++.+|++
T Consensus         9 ~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~i~~~~~~dsG   62 (89)
T d1f2qa2           9 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----YENHNISITNATVEDSG   62 (89)
T ss_dssp             CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC----CCSSEEEESSCCGGGCE
T ss_pred             cCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc----cccceEEEeeeeeecCc
Confidence            4457899999999999765 55689999999877432    23456999999999876

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=1.5e-06  Score=50.81  Aligned_cols=72  Identities=15%  Similarity=0.270  Sum_probs=48.1

Q ss_pred             ceeEEEeeeec-cCCCEEEEEEcCC-c-e--EEe--eeeeEEecCCeEEEEeCCC-ceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEML-MAESTVAWLRVDT-Q-T--ILT--IQTHVITKNHRIGVTHSET-KAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~~i~W~k~~~-~-~--~~~--~~~~~~~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.... .....+.||++.. . +  +..  .........+|+....... ..++|.|.+++++|+|.|.|.+..
T Consensus        15 ~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          15 ANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAIS   94 (114)
T ss_dssp             CCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEe
Confidence            35778886533 3456789998632 1 1  111  1222334567888776654 568899999999999999998843

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.5e-08  Score=59.02  Aligned_cols=34  Identities=24%  Similarity=0.570  Sum_probs=30.2

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEE
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGEL  132 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~  132 (163)
                      ....+.+|+++.|.|.+.|.|.|.+.|++++..+
T Consensus        17 ~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~   50 (130)
T d1gxea_          17 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQG   50 (130)
T ss_dssp             CEEEESSSSCCCCEEECCSBSCCEEEEEEECCCS
T ss_pred             CCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEc
Confidence            4678999999999999999999999999987544

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.9e-07  Score=51.21  Aligned_cols=71  Identities=20%  Similarity=0.318  Sum_probs=44.4

Q ss_pred             cceeEEEeeeeccC----CCEEEEEEcCCceEEee-eeeE-E--ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          2 AARMLIEIGEMLMA----ESTVAWLRVDTQTILTI-QTHV-I--TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         2 ~~~~~~~~~~~~~~----~~~i~W~k~~~~~~~~~-~~~~-~--~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ...++|.|......    ...+.|.+. +..+... .... .  ...+|..+...  ++++|.|.+++++|+|.|.|.+.
T Consensus         9 G~~a~L~C~~~~~~~~~~~~~v~w~~~-~~~v~~~~~~~~~~~~~~~~r~~~~~~--g~~sL~I~~v~~~D~G~Y~C~V~   85 (105)
T d1dr9a1           9 KEVATLSCGHNVSVEELAQTRIYWQKE-KKMVLTMMSGDMNIWPEYKNRTIFDIT--NNLSIVILALRPSDEGTYECVVL   85 (105)
T ss_dssp             TSCEEECCSCCCCTTHHHHCEEEEEET-TEEEEEEETTEEEECHHHHTTEEEEST--TTTEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEEECCcccceeEEEEEEEec-ceEEEEEEeccceeecceeeeeeeccC--CcEEEEECcCChHHCeEEEEEEE
Confidence            34678888644322    256778874 3333222 1111 1  22456665443  46799999999999999999996


Q ss_pred             eC
Q psy16425         74 TD   75 (163)
Q Consensus        74 ~~   75 (163)
                      +.
T Consensus        86 ~~   87 (105)
T d1dr9a1          86 KY   87 (105)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.9e-07  Score=52.69  Aligned_cols=86  Identities=19%  Similarity=0.174  Sum_probs=49.1

Q ss_pred             ceeEEEeeeec---cCCCEEEEEEcCCce---EEee--eeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEML---MAESTVAWLRVDTQT---ILTI--QTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~---~~~~~i~W~k~~~~~---~~~~--~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|....   .....+.|++.....   ....  ........+|..+... ..++++|.|.+++++|+|.|.|.+.
T Consensus        15 ~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~   94 (116)
T d1xeda_          15 NSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLG   94 (116)
T ss_dssp             CCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEES
T ss_pred             CCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCEEEEEEEE
Confidence            46888886432   233567899853211   1111  1111123455555433 3578899999999999999999985


Q ss_pred             eCC-CceEeEEEEEEc
Q psy16425         74 TDP-MKSQVGYLEVVV   88 (163)
Q Consensus        74 ~~~-~~~~~~~l~v~~   88 (163)
                      ..+ .......|.|..
T Consensus        95 ~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          95 INSRGLSFDVSLEVLE  110 (116)
T ss_dssp             CGGGCCEEEEEEEEEC
T ss_pred             cCCCCceEeEEEEEEC
Confidence            332 223334555554

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=8.6e-07  Score=51.70  Aligned_cols=59  Identities=15%  Similarity=0.165  Sum_probs=42.7

Q ss_pred             CcEEEeCCCcEEEEeEeccCC---CCeEEEEECCeEEEec-------------CCceEEeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSP---KPNITWRREGGELIAQ-------------GNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p---~p~v~W~~~~~~~~~~-------------~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.|.|   .|.+.|++++......             .........|.|.++..+|++.
T Consensus         8 ~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           8 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             ceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            357888999999999999988   5799999986432111             1111233568999999998763

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=7.6e-07  Score=51.70  Aligned_cols=59  Identities=12%  Similarity=0.144  Sum_probs=43.0

Q ss_pred             CcEEEeCCCcEEEEeEeccCC---CCeEEEEECCeEEEecCC-------------ceEEeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSP---KPNITWRREGGELIAQGN-------------GQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p---~p~v~W~~~~~~~~~~~~-------------~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.|.|   .|.+.|++++........             .......|.|.+|+.+|.+.
T Consensus        12 ~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   86 (110)
T d2avga1          12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGG   86 (110)
T ss_dssp             CCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEE
T ss_pred             CeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcE
Confidence            357788999999999999988   578999998743211111             11234579999999998763

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.2e-07  Score=52.27  Aligned_cols=60  Identities=22%  Similarity=0.243  Sum_probs=41.3

Q ss_pred             CcccccCCCCcEEEeCCCcEEEEeEeccCCCCe-EEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425         90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPN-ITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      |.+...|  ....+.+|+++.|.|.+.+.|.+. +.|++++..+.      ..+..|.|.+++.+|++.
T Consensus         2 P~It~~P--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~v~~~d~G~   62 (82)
T d1f2qa1           2 PKVSLNP--PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE------ETNSSLNIVNAKFEDSGE   62 (82)
T ss_dssp             CCCEEES--SCSEEETTCCEEEECCTTCC----CCEEEETTEECS------CCSSEEEECSCCGGGCEE
T ss_pred             CEEEEcC--CCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeee------cccceeEECCCChhhCCc
Confidence            4444434  245688999999999999998875 55678876653      234569999999999763

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=4.5e-07  Score=52.18  Aligned_cols=57  Identities=16%  Similarity=0.188  Sum_probs=42.1

Q ss_pred             cEEEeCCCcEEEEeEecc-CCCC--eEEEEECCeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASG-SPKP--NITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~-~p~p--~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      ...+.+|+.++|.|.+.| .|.|  .++|++++..+....... .....|+|..+..+|.+
T Consensus        13 ~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g   73 (103)
T d1iama1          13 PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGA   73 (103)
T ss_dssp             CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSC
T ss_pred             CceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCC
Confidence            345788999999999986 6766  588999999886553332 24467888877777764

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.4e-07  Score=53.00  Aligned_cols=66  Identities=14%  Similarity=0.165  Sum_probs=44.3

Q ss_pred             CCcccccCCCCcEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEec------CCceE----EeceEEEEcchh-hhHh
Q psy16425         89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQ------GNGQE----DFPFFKRTKKKK-KKKK  156 (163)
Q Consensus        89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~------~~~~~----~~~~l~i~~v~~-~~~~  156 (163)
                      ||.+...+  ....+.+|+.+.|.|.+.|.|+| .+.|++++......      .+...    ....|.|.++.. +|.+
T Consensus         2 PP~i~~~~--~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           2 PPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG   79 (101)
T ss_dssp             SCCCEESC--SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             CceEEEcC--CcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCE
Confidence            56665543  36678899999999999999988 69999875322111      11111    234788999874 5664

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.34  E-value=1.2e-06  Score=51.24  Aligned_cols=72  Identities=17%  Similarity=0.253  Sum_probs=45.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--CceE---EeeeeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQTI---LTIQTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~~---~~~~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.........+.||+..  +.+.   ...........+++..... ....++|.|.+++++|+|.|.|.+..
T Consensus        16 ~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa~~~   93 (113)
T d2bnqd1          16 ENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRP   93 (113)
T ss_dssp             CCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEeEeEec
Confidence            46788887766666779999853  2111   1111111122234443333 34678999999999999999999853

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=1.3e-06  Score=50.52  Aligned_cols=70  Identities=16%  Similarity=0.204  Sum_probs=45.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--CceEE-ee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQTIL-TI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~~~-~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+..  ..+.. ..  .........|+..... ..+++|.|.+++++|+|.|.|.+.
T Consensus        16 ~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~L~I~~~~~~DsA~YyCa~~   90 (106)
T d1a0ql1          16 GKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGS-GRDYSFSISNLEPEDIATYYCLQY   90 (106)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-TTEEEEEECSCCGGGCSEEEEEEC
T ss_pred             CCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecC-CCEeeeEehhhcccCCEeEEEEEe
Confidence            46788898766666679999863  11111 11  1111122346665544 356799999999999999999873

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.33  E-value=2.2e-07  Score=51.42  Aligned_cols=52  Identities=19%  Similarity=0.258  Sum_probs=41.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCe-EEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPN-ITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ...+.+|++++|.|.+.+.|.+. +.|++++..+..      .+..|.|.+++.+|+++
T Consensus        14 ~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~   66 (84)
T d1fnla1          14 WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGE   66 (84)
T ss_dssp             CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEE
T ss_pred             CcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee------cceeeEecCCcccCCEE
Confidence            46788999999999999998886 556777776543      23569999999999874

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.32  E-value=4.9e-06  Score=48.87  Aligned_cols=71  Identities=17%  Similarity=0.327  Sum_probs=48.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEEee------eeeEEe---cCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTILTI------QTHVIT---KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~~~------~~~~~~---~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|.........+.||+.. +......      ......   ...++.........+.|.|.+++++|+|.|.|.+
T Consensus        17 ~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~   96 (118)
T d2ij0c1          17 TSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSGFYVCSA   96 (118)
T ss_dssp             CCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCceEEEEE
Confidence            46888898776667889999963 2221111      111111   2456666655556778999999999999999987


Q ss_pred             E
Q psy16425         73 N   73 (163)
Q Consensus        73 ~   73 (163)
                      .
T Consensus        97 ~   97 (118)
T d2ij0c1          97 L   97 (118)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=1.5e-06  Score=50.30  Aligned_cols=70  Identities=17%  Similarity=0.184  Sum_probs=45.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEE---ee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTIL---TI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~---~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+.. +....   .. .........++..... ..+++|.|.+++++|+|.|.|.+.
T Consensus        17 ~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~l~~~Dsa~YyCa~~   91 (107)
T d1c5cl1          17 ERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRS-GSDYSLTISSLESEDFADYYCLQY   91 (107)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEeccc-CCEEEEEEhhhcccCCeEEEEecC
Confidence            46888898776667779999863 22211   11 1111122345554433 356899999999999999999763

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=1.6e-06  Score=50.10  Aligned_cols=70  Identities=17%  Similarity=0.279  Sum_probs=45.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ceE-E-ee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QTI-L-TI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~-~-~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+... ... . ..  .........|+...... .+++|.|.+++++|+|.|.|...
T Consensus        17 ~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1j1pl_          17 NSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-TDFTLSINSVETEDFGMYFCQQA   91 (107)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccC-CEEEEEEcccCcCCCEEEEEEcC
Confidence            468888987666667799998742 111 1 11  11111223566655443 56899999999999999999763

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.29  E-value=1.3e-06  Score=50.42  Aligned_cols=70  Identities=14%  Similarity=0.215  Sum_probs=45.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--CceEEee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQTILTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+..  ..+....   .........|+..... ...++|.|.+++++|+|.|.|...
T Consensus        17 ~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   91 (106)
T d1i8ka_          17 EKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGT-GTDFVFTIENTLSEDVGDYYCLQS   91 (106)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCC-CCeeeecccCCccccCEEEeEecC
Confidence            46888897766666679999863  2221111   1111123456665443 357899999999999999999863

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5.9e-07  Score=51.93  Aligned_cols=56  Identities=16%  Similarity=0.300  Sum_probs=37.8

Q ss_pred             EEEeCCCcEEEEeEecc-CC--CCeEEEEECCeEEEecCCceE------EeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASG-SP--KPNITWRREGGELIAQGNGQE------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~-~p--~p~v~W~~~~~~~~~~~~~~~------~~~~l~i~~v~~~~~~  156 (163)
                      ..+.+|+.++|.|.+.| +|  .+.+.|++++..+........      ....|.|.....+|.+
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~   76 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHR   76 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGC
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCc
Confidence            35778999999999986 54  447999999998865432221      2245566655555543

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=2.7e-06  Score=49.12  Aligned_cols=70  Identities=16%  Similarity=0.222  Sum_probs=45.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--CceEE--ee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQTIL--TI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~~~--~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+..  ..+..  .. .........++..... ...+.|.|.+++++|+|.|.|...
T Consensus        17 ~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~l~~~DSa~YyCa~~   91 (107)
T d1kcvl1          17 EAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGS-ATDFTLTISSVQADDDADYYCGQS   91 (107)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeecc-CCeeecEEHhheecCCceEEEEec
Confidence            46888998776666779999863  11111  11 1111112345554433 356899999999999999999873

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=1.7e-06  Score=50.05  Aligned_cols=70  Identities=21%  Similarity=0.240  Sum_probs=45.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c-eEE-ee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q-TIL-TI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~-~~~-~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+... . +.. ..  .........|+..... ..+++|.|.+++++|+|.|.|.+.
T Consensus        17 ~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1ospl1          17 DRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDS-GKDYTLSITSLQTEDVATYFCQQY   91 (107)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECS-SSSEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecC-CCeEEeEEcccccccCCcEEEeec
Confidence            467888877665556799999642 1 111 11  1111123456766543 356899999999999999999763

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=9.1e-07  Score=52.45  Aligned_cols=72  Identities=10%  Similarity=0.296  Sum_probs=47.1

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcC-Cce------EEeee----eeEEe----cCCeEEEEeCCCceEEEEEcccCCCCCe
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVD-TQT------ILTIQ----THVIT----KNHRIGVTHSETKAWYLHIREVRESDRG   66 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~-~~~------~~~~~----~~~~~----~~~r~~~~~~~~~~~~L~i~~v~~~d~G   66 (163)
                      ..++.|.|.........+.||+.. +..      +....    ...+.    ...|+.........++|+|.+++++|+|
T Consensus        16 G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~~~~Dsg   95 (122)
T d1nezg_          16 GQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEG   95 (122)
T ss_dssp             TCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSCCGGGCE
T ss_pred             CCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEcccccCCCE
Confidence            346888898777777889999852 111      11111    11111    1235555555556688999999999999


Q ss_pred             EEEEEEE
Q psy16425         67 WYMCQVN   73 (163)
Q Consensus        67 ~Y~C~~~   73 (163)
                      .|.|.+.
T Consensus        96 ~YyCa~~  102 (122)
T d1nezg_          96 YYFCSVI  102 (122)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeEe
Confidence            9999874

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=2.1e-06  Score=49.56  Aligned_cols=70  Identities=19%  Similarity=0.256  Sum_probs=45.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC--ceE--Eee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT--QTI--LTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~--~~~--~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+...  .+.  ... .........|+.....+ .++.|.|.+++++|+|.|.|...
T Consensus        16 ~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~-~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          16 EKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG-TDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             SCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCC-CEEEeEECCcChhhCCCcccccc
Confidence            468888988766667899998631  111  111 11111124466555443 56799999999999999999763

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=6.6e-07  Score=51.79  Aligned_cols=56  Identities=11%  Similarity=0.235  Sum_probs=40.3

Q ss_pred             EEeCCCcEE---EEeEeccCCCCeEEEEECCeEEEecCCceE-----------EeceEEEEcchhhhHhh
Q psy16425        102 VIREGSNVT---LKCAASGSPKPNITWRREGGELIAQGNGQE-----------DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       102 ~~~~g~~~~---l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~v~~~~~~~  157 (163)
                      .+.+|..+.   +.|.+.|+|.|.+.|++++..+........           ....|.|.++..+|.+.
T Consensus         8 ~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   77 (107)
T d1he7a_           8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN   77 (107)
T ss_dssp             CCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEE
T ss_pred             EECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcE
Confidence            344455555   455889999999999999998765443321           22569999999998763

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=2e-06  Score=49.73  Aligned_cols=69  Identities=19%  Similarity=0.246  Sum_probs=44.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--CceEE-ee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQTIL-TI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~~~-~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|.........+.||+..  ..+.. ..  .........|+..... ..++.|.|.+++++|+|.|.|.+
T Consensus        17 ~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~-~~~~~L~I~~~~~~DsA~YyCa~   90 (107)
T d1mexl1          17 NRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGS-GTDFTLTINNVQSEDLAEYFCQQ   90 (107)
T ss_dssp             SCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCC-CCeeeeeechhheecceeEEEeE
Confidence            46788887665556679999863  11111 11  1111122456665544 35789999999999999999976

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.26  E-value=2.1e-06  Score=49.61  Aligned_cols=69  Identities=22%  Similarity=0.275  Sum_probs=44.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|.........+.||+... ..   +... .........|+..... ..+++|.|.+++++|+|.|.|..
T Consensus        17 ~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~l~~~DsA~YyCa~   90 (107)
T d1tjgl1          17 DRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGS-GTEFTLTISTLRPEDFATYYCQQ   90 (107)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEecc-CCEEEEEeccceeCcCceEEEEE
Confidence            467888887766667899998642 11   1111 1111112345555433 35789999999999999999976

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.25  E-value=1.1e-06  Score=51.54  Aligned_cols=72  Identities=11%  Similarity=0.191  Sum_probs=45.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cc-eEE---eeeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQ-TIL---TIQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~-~~~---~~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.........+.||+.. +. +..   ...........++...... ...+.|.|.+++++|+|.|.|.+..
T Consensus        17 ~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1lp9e1          17 LPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFL   94 (115)
T ss_dssp             SCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceEEEEc
Confidence            36788888777777889999863 11 111   1111111123445444332 2466899999999999999998743

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.2e-06  Score=50.51  Aligned_cols=73  Identities=18%  Similarity=0.236  Sum_probs=43.9

Q ss_pred             ceeEEEeeeecc-------CCCEEEEEEcCCceE----Eee-e-ee--EEecCCeEEEEeCC-CceEEEEEcccCCCCCe
Q psy16425          3 ARMLIEIGEMLM-------AESTVAWLRVDTQTI----LTI-Q-TH--VITKNHRIGVTHSE-TKAWYLHIREVRESDRG   66 (163)
Q Consensus         3 ~~~~~~~~~~~~-------~~~~i~W~k~~~~~~----~~~-~-~~--~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G   66 (163)
                      .+|.|.|.-...       ....+.|++......    ... . ..  .....+|+.+..+. .++++|.|.+++++|+|
T Consensus        17 ~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG   96 (121)
T d2g5ra1          17 MCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAG   96 (121)
T ss_dssp             CCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSCCGGGCE
T ss_pred             CcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCCChHHCE
Confidence            468888865311       224678998532211    111 0 00  01224577766543 36789999999999999


Q ss_pred             EEEEEEEeC
Q psy16425         67 WYMCQVNTD   75 (163)
Q Consensus        67 ~Y~C~~~~~   75 (163)
                      .|.|.+...
T Consensus        97 ~Y~C~v~~~  105 (121)
T d2g5ra1          97 RYFFRMEKG  105 (121)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEEeC
Confidence            999999544

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.8e-07  Score=50.90  Aligned_cols=59  Identities=14%  Similarity=0.121  Sum_probs=39.7

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEE--ECCeEEEec-CCc----eEEeceEEEEcchhhhHhh
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWR--REGGELIAQ-GNG----QEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~--~~~~~~~~~-~~~----~~~~~~l~i~~v~~~~~~~  157 (163)
                      ....+.+|+++.|.|.+.|.|.|.+.|.  .++...... ...    ....+.|.|.+|.++|.+.
T Consensus         9 ~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   74 (96)
T d2c9aa1           9 QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK   74 (96)
T ss_dssp             CCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSE
T ss_pred             CCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeE
Confidence            3678999999999999999998875543  222222111 111    1234679999999999763

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.19  E-value=4.5e-06  Score=48.45  Aligned_cols=71  Identities=15%  Similarity=0.175  Sum_probs=45.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-C-ceEEee---eeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-T-QTILTI---QTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~-~~~~~~---~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+.. + .+....   ........+++..... ....++|.|.+++++|+|.|.|.+.
T Consensus        16 ~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   92 (111)
T d1bd2d1          16 RISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAM   92 (111)
T ss_dssp             SCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEeecc
Confidence            46788887666666789999863 1 221111   1111112234444333 3468899999999999999999874

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.4e-05  Score=45.01  Aligned_cols=25  Identities=24%  Similarity=0.769  Sum_probs=21.8

Q ss_pred             ceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425         51 KAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus        51 ~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ++++|.|.+++.+|+|.|.|.+...
T Consensus        67 ~~~sL~I~~v~~~D~G~Y~C~V~~~   91 (110)
T d1ncna_          67 DSWTLRLHNLQIKDKGLYQCIIHHK   91 (110)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CeEEEEECCCChhHCEEEEEEEEec
Confidence            3569999999999999999999544

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8.4e-08  Score=56.30  Aligned_cols=70  Identities=19%  Similarity=0.266  Sum_probs=48.2

Q ss_pred             EEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCC-CCeEEEEECCeEEEecCCc--eE--------EeceEEEEcchh
Q psy16425         84 LEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSP-KPNITWRREGGELIAQGNG--QE--------DFPFFKRTKKKK  152 (163)
Q Consensus        84 l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~p~v~W~~~~~~~~~~~~~--~~--------~~~~l~i~~v~~  152 (163)
                      |.|..+|.+....   ...+.+|+.+.|.|.+.+.| .+.+.|++++..+......  ..        ....|.|.++..
T Consensus         2 L~V~~Pp~i~~~~---~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~   78 (115)
T d2crya1           2 LTVNGPPIISSTQ---TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR   78 (115)
T ss_dssp             CCCCSSCCEEEEC---CCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             eEEecCCEEecCC---CEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch
Confidence            4566677665322   34577899999999999854 5579999999887543211  11        124699999999


Q ss_pred             hh-Hh
Q psy16425        153 KK-KK  156 (163)
Q Consensus       153 ~~-~~  156 (163)
                      +| ++
T Consensus        79 ~D~~G   83 (115)
T d2crya1          79 ADFQT   83 (115)
T ss_dssp             HHHHS
T ss_pred             hcCCe
Confidence            98 44

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.17  E-value=3.2e-06  Score=48.97  Aligned_cols=71  Identities=17%  Similarity=0.260  Sum_probs=43.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--CceEE--ee-eeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQTIL--TI-QTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~~~--~~-~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+..  ..+..  .. .........+....... ...++|.|.+++++|+|.|.|.+.
T Consensus        15 ~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (110)
T d1u3ha1          15 ETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAS   91 (110)
T ss_dssp             SCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEECCE
T ss_pred             CCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeeeec
Confidence            46788887666566679999863  11111  11 01111112233333222 356789999999999999999874

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.16  E-value=9.8e-06  Score=46.77  Aligned_cols=70  Identities=20%  Similarity=0.260  Sum_probs=43.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCc--eEEee--e-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQ--TILTI--Q-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~--~~~~~--~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+....  +....  . ........++..... ..+++|.|.+++++|+|.|.|...
T Consensus        17 ~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~l~~~Dsa~YyCA~~   91 (108)
T d1jhll_          17 ETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGS-GTDFTLTISSLEPEDFAMYICQQH   91 (108)
T ss_dssp             SCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEES-SSEEEEEECSCCTTCCSEEEEEEC
T ss_pred             CCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCC-CCEEEeEeeeeEeccceEEEEeeC
Confidence            4678889876666667999987421  11111  1 010112233433332 356789999999999999999763

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.15  E-value=3.9e-06  Score=48.95  Aligned_cols=68  Identities=22%  Similarity=0.315  Sum_probs=43.2

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|....  .....+.||+......   ....+...+|+....+. ...++|.|.+++++|+|.|.|.+.
T Consensus        16 ~svtL~C~~s~~~~~~~~~~Wyrq~~g~~---~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   86 (113)
T d1vesa_          16 ESLTINCVLRDASFELKDTGWYRTKLGST---NEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAF   86 (113)
T ss_dssp             CCEEEEEEEESCSSCCCEEEEEEEETTCC---CCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEECCCcccCCccceeeeecccc---ceeeeeecccccceeECCCCceeeeecccccCCcceEeeeee
Confidence            35788886543  3456789998532111   01112233455544433 456799999999999999999983

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.14  E-value=3.9e-06  Score=48.59  Aligned_cols=70  Identities=20%  Similarity=0.209  Sum_probs=45.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cc-e--EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQ-T--ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~-~--~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      +.+.|.|.........+.||+.. +. +  +... .........++..... ...+.|.|.+++++|+|.|.|.+.
T Consensus        17 ~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~-~~~~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          17 ETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGS-GTQFSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEecc-CCEEEEEEccccccCCeeEEEeee
Confidence            46888898766666679999963 22 1  1111 1111112345655443 356799999999999999999873

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.13  E-value=4.2e-06  Score=48.24  Aligned_cols=71  Identities=18%  Similarity=0.199  Sum_probs=45.6

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCc--e--EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQ--T--ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~--~--~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ...+.|.|.........+.||+....  +  +... .........|+..... ...+.|.|.+++++|+|.|.|...
T Consensus        15 G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1op3k1          15 GDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGS-GTEFTLTISGLQFDDFATYHCQHY   90 (106)
T ss_dssp             TCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEEESCCGGGCSEEEEEEE
T ss_pred             CCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeecc-CCEEEEEEccccccCCCcEeeeeC
Confidence            34688889876666677999987421  1  1111 1111122346655443 356789999999999999999863

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.13  E-value=1.9e-05  Score=45.68  Aligned_cols=71  Identities=14%  Similarity=0.227  Sum_probs=43.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-c-e--EEee----eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-Q-T--ILTI----QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~-~--~~~~----~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.... ....+.||++.. . +  +...    .........++.........+.|.|.+++++|+|.|.|....
T Consensus        17 ~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          17 EKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             CCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEEEEeeCC
Confidence            46788886543 456899999632 1 1  1111    011111123444444444568999999999999999998743

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.11  E-value=1.5e-05  Score=46.11  Aligned_cols=70  Identities=17%  Similarity=0.214  Sum_probs=42.7

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcC-Cc-e--EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVD-TQ-T--ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~-~~-~--~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|..... ....+.||+.. +. +  +... .........++.... ....++|.|.+++++|+|.|.|.+.
T Consensus        14 ~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~Dsa~YyCa~~   89 (110)
T d2esvd1          14 RAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITE-DRKSSTLILPHATLRDTAVYYCIVV   89 (110)
T ss_dssp             SCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECT-TCSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecc-cCCeeeehhcccccCCceEEEEEEe
Confidence            468888875433 34568999863 21 1  1111 111122233333332 2467899999999999999999874

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.2e-05  Score=46.78  Aligned_cols=72  Identities=17%  Similarity=0.360  Sum_probs=44.8

Q ss_pred             cceeEEEeeeecc-CCCEEEEEEcCC--c--eE--Eee-eee-EE---ecCCeEEEEeCCCceEEEEEcccCCCCCeEEE
Q psy16425          2 AARMLIEIGEMLM-AESTVAWLRVDT--Q--TI--LTI-QTH-VI---TKNHRIGVTHSETKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         2 ~~~~~~~~~~~~~-~~~~i~W~k~~~--~--~~--~~~-~~~-~~---~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ...+.|.|..... ....|.||+...  .  .+  ... ... ..   ....|+...... ..++|.|.+++++|+|.|.
T Consensus        15 G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~-~~~~L~I~~l~~~Dsg~Yy   93 (114)
T d1akjd_          15 GETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLG-DTFVLTLSDFRRENEGYYF   93 (114)
T ss_dssp             TCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEET-TEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCC-CChhcEEccCCCCCCEEEe
Confidence            3568888975433 345689999641  1  11  111 111 11   123456555543 4678999999999999999


Q ss_pred             EEEEe
Q psy16425         70 CQVNT   74 (163)
Q Consensus        70 C~~~~   74 (163)
                      |.+..
T Consensus        94 Ca~~~   98 (114)
T d1akjd_          94 CSALS   98 (114)
T ss_dssp             EEEEE
T ss_pred             EeEcC
Confidence            99843

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6.5e-07  Score=51.30  Aligned_cols=58  Identities=12%  Similarity=0.094  Sum_probs=45.0

Q ss_pred             cEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecC----CceEEeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQG----NGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~----~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      .....+|+.+.|.|.+. +.|.+.+.|++++..+....    +....++.|.|.+++.+|++.
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   73 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGH   73 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEE
Confidence            56677899999999885 67999999999986543221    122467899999999999864

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.10  E-value=1e-05  Score=47.02  Aligned_cols=70  Identities=17%  Similarity=0.319  Sum_probs=41.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--CceEE--eeeeeEEecCC-eEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQTIL--TIQTHVITKNH-RIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~~~--~~~~~~~~~~~-r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.... ....+.||++.  +.+..  ........... ...........++|.|.+++++|+|.|.|.+.
T Consensus        17 ~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (113)
T d1h5ba_          17 TDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAE   91 (113)
T ss_dssp             CCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEEec
Confidence            35788887654 44679999964  22211  11111111111 11122222456789999999999999999874

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.10  E-value=5.9e-06  Score=48.27  Aligned_cols=72  Identities=15%  Similarity=0.219  Sum_probs=44.7

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce---EEe-e-eeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT---ILT-I-QTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~---~~~-~-~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.........|.||+.. +..   +.. . .........++...... ...+.|.|.+++++|+|.|.|.+..
T Consensus        16 ~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (115)
T d1j8hd1          16 ALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVSE   94 (115)
T ss_dssp             SCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEES
T ss_pred             CCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccceeeecC
Confidence            35788888766666789999864 111   111 1 11111222344433322 3456899999999999999999853

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.08  E-value=2.3e-05  Score=45.37  Aligned_cols=70  Identities=11%  Similarity=0.249  Sum_probs=44.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--Cce--EEe-eeeeEE----ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQT--ILT-IQTHVI----TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~--~~~-~~~~~~----~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|... .....|.||++.  ..+  +.. ......    ...+|+.........++|.|.+++++|+|.|.|.+.
T Consensus        15 ~svtl~C~~~-~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   93 (112)
T d1kgce1          15 QDVALRCDPI-SGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVYLCASS   93 (112)
T ss_dssp             CCEEEEEECC-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEEC-CCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEEEEEeee
Confidence            3578888653 345689999963  111  111 111111    123456555555567899999999999999999874

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.07  E-value=7.1e-06  Score=47.31  Aligned_cols=69  Identities=20%  Similarity=0.270  Sum_probs=44.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ceE-Eee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QTI-LTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~-~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|.........+.||+... ... ...   .........|+..... ..+.+|.|.+++++|+|.|.|..
T Consensus        17 ~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d1d5il1          17 ERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGS-GQDYSLTISSLEYEDMGIYYCLQ   90 (107)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeeccc-CCEEEccccccCCcCCEEEEeee
Confidence            468888987666677789998631 111 111   1111112346655444 34679999999999999999976

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.07  E-value=7.1e-06  Score=47.46  Aligned_cols=70  Identities=16%  Similarity=0.182  Sum_probs=45.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC--ceE-Eee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT--QTI-LTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~--~~~-~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+...  .+. ...  .........++.....+ ..+.|.|.+++++|+|.|.|...
T Consensus        19 ~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~l~~~Dsa~YyCA~~   93 (109)
T d1bwwa_          19 DRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSG-TDYTFTISSLQPEDIATYYCQQY   93 (109)
T ss_dssp             CCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCC-CEeEEEEeeceeCcCceEEEeec
Confidence            467888887766667789998632  111 111  11111123466554433 46789999999999999999863

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.07  E-value=2.7e-06  Score=49.12  Aligned_cols=69  Identities=19%  Similarity=0.240  Sum_probs=43.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEEee----eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTILTI----QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|.........+.||+.. +......    .........|+..... ..+++|.|.+++++|+|.|.|..
T Consensus        17 ~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~-~~~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d3cx5k1          17 DRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGS-GTDYSLTISNLEPEDIATYFCQH   90 (107)
T ss_dssp             SCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEE-TTEEEEECSCCCSCCCSEEEEEE
T ss_pred             CCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEcc-CCEEEEEEeEeeecCCCcEEeee
Confidence            46888898776666779999864 2221111    1111112234433332 24679999999999999999976

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.06  E-value=1.4e-05  Score=46.66  Aligned_cols=73  Identities=19%  Similarity=0.249  Sum_probs=45.9

Q ss_pred             ceeEEEeeeec-cCCCEEEEEEcC--CceE--Eee-eeeE-E--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEML-MAESTVAWLRVD--TQTI--LTI-QTHV-I--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~~i~W~k~~--~~~~--~~~-~~~~-~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|.... .....+.||+..  ..+.  ... .... .  ...+|+...... ...++|.|.+++++|+|.|.|.+
T Consensus        16 ~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~   95 (116)
T d1tvda_          16 SEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAF   95 (116)
T ss_dssp             CCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccccccceeeE
Confidence            36788886543 345678999853  2221  111 1111 1  234577766544 35678999999999999999987


Q ss_pred             EeC
Q psy16425         73 NTD   75 (163)
Q Consensus        73 ~~~   75 (163)
                      ...
T Consensus        96 ~~~   98 (116)
T d1tvda_          96 TLP   98 (116)
T ss_dssp             ECT
T ss_pred             ecC
Confidence            543

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.05  E-value=9.9e-06  Score=47.18  Aligned_cols=72  Identities=11%  Similarity=0.194  Sum_probs=42.9

Q ss_pred             ceeEEEeeeec-cCCCEEEEEEcC--CceEEee--e--eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEML-MAESTVAWLRVD--TQTILTI--Q--THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~~i~W~k~~--~~~~~~~--~--~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..|.|.|.... .....+.||+..  +.+....  .  ........+....... .+.++|.|.+++++|+|.|.|.+..
T Consensus        16 ~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   95 (114)
T d2ak4d1          16 EDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSG   95 (114)
T ss_dssp             CCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCceEeCCC
Confidence            46888887443 344568899853  2222111  1  1111122333443333 3578999999999999999998743

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.04  E-value=3.2e-05  Score=44.86  Aligned_cols=70  Identities=10%  Similarity=0.210  Sum_probs=44.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC--CceEE--e-e---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD--TQTIL--T-I---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~~~--~-~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.... ....|.||++.  ..+..  . .   .........++.........++|.|.+++++|+|.|.|.+.
T Consensus        15 ~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~   92 (113)
T d2ntsp1          15 QQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCASS   92 (113)
T ss_dssp             CCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceeeeeeee
Confidence            46788887543 45689999853  22111  1 1   11111223455555555567899999999999999999874

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.03  E-value=1.1e-05  Score=47.08  Aligned_cols=70  Identities=20%  Similarity=0.388  Sum_probs=43.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC--ceEE---eeeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT--QTIL---TIQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~--~~~~---~~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|..... ...+.||+...  .+..   ...........++...... ...++|.|.+++++|+|.|.|...
T Consensus        16 ~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (115)
T d1ogad1          16 ENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGA   91 (115)
T ss_dssp             CCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEccccc
Confidence            457888876543 45789998642  1111   1111111222344433333 467899999999999999999874

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.02  E-value=6.1e-06  Score=47.25  Aligned_cols=70  Identities=17%  Similarity=0.238  Sum_probs=43.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC--ceEEee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT--QTILTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~--~~~~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+...  .+....   .........++....+ ...+.|.|.+++++|+|.|.|.+.
T Consensus        14 ~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~l~~~Dsa~YyCA~~   88 (103)
T d8faba1          14 QTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTS-GTTVTLTISGVQAEDEADYYCQAW   88 (103)
T ss_dssp             SCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-TTEEEEEETTCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCC-CCccCceEcCcchhHCceEEeeec
Confidence            357888877666667789998742  111111   0111112334444333 356799999999999999999764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.02  E-value=1.3e-05  Score=46.63  Aligned_cols=70  Identities=17%  Similarity=0.252  Sum_probs=41.6

Q ss_pred             ceeEEEeeee------ccCCCEEEEEEcCC--ceE-Eee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425          3 ARMLIEIGEM------LMAESTVAWLRVDT--QTI-LTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         3 ~~~~~~~~~~------~~~~~~i~W~k~~~--~~~-~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      ..+.|.|...      ......|.||+...  .+. ...  .........++..... ...++|.|.+++++|+|.|.|.
T Consensus        17 ~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s-~~~~~L~I~~l~~~Dsa~YyCA   95 (113)
T d1q9ra1          17 EKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGS-GTDFTLTITSVQAEDLAVYYCK   95 (113)
T ss_dssp             SCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCC-CCeEeEEecccccCCCeEEEec
Confidence            4678888543      22334689998632  111 111  1111122345544332 3567899999999999999998


Q ss_pred             EE
Q psy16425         72 VN   73 (163)
Q Consensus        72 ~~   73 (163)
                      ..
T Consensus        96 ~~   97 (113)
T d1q9ra1          96 QS   97 (113)
T ss_dssp             EC
T ss_pred             cc
Confidence            63

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.02  E-value=7.9e-06  Score=47.33  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=44.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceE---Eee-eeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTI---LTI-QTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~---~~~-~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.........+.||++. +...   ... .........++...... ...+.|.|.+++++|+|.|.|....
T Consensus        16 ~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          16 DFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALSG   93 (110)
T ss_dssp             EEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEEE
T ss_pred             CCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccceeecC
Confidence            46788887666566779999964 2211   111 11111123345444333 3467899999999999999998743

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.01  E-value=8e-06  Score=47.47  Aligned_cols=67  Identities=22%  Similarity=0.322  Sum_probs=43.0

Q ss_pred             ceeEEEeee--eccCCCEEEEEEcC-CceEEeeeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGE--MLMAESTVAWLRVD-TQTILTIQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~--~~~~~~~i~W~k~~-~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|..  .......|.||++. +...    ...+...+|+...... ...++|.|.+++++|+|.|.|.+.
T Consensus        15 ~svtl~C~~s~~s~~~~~i~WYrq~~g~~~----~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   85 (112)
T d1sq2n_          15 ESLTINCVLRDASYALGSTCWYRKKSGEGN----EESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLG   85 (112)
T ss_dssp             CCEEEEEEECSCSSCCCCEEEEEEETTSCC----CEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEEECCCcccCCceEEEEeecccee----eeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEe
Confidence            357788854  33455789999853 1111    1112234455544333 456899999999999999999874

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.01  E-value=8.7e-06  Score=47.52  Aligned_cols=71  Identities=20%  Similarity=0.254  Sum_probs=43.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cc---eEEee--eeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQ---TILTI--QTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~---~~~~~--~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+.. +.   .+...  .........+....... ..+++|.|.+++++|+|.|.|.+.
T Consensus        16 ~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~   93 (115)
T d1i9ea_          16 ASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS   93 (115)
T ss_dssp             SCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceeccccc
Confidence            35788887766667788999853 11   11111  11111122233333222 356789999999999999999874

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.01  E-value=1.6e-05  Score=46.09  Aligned_cols=69  Identities=22%  Similarity=0.219  Sum_probs=41.7

Q ss_pred             ceeEEEeeee----ccCCCEEEEEEcC-CceE-Eee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEM----LMAESTVAWLRVD-TQTI-LTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~----~~~~~~i~W~k~~-~~~~-~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|...    ......+.||++. +... ...   .........|+.....+ .++.|.|.+++++|+|.|.|..
T Consensus        17 ~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~-~~~~L~I~~~~~~DsA~YyCa~   94 (111)
T d2gsia1          17 QPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSG-TDFTLNIHPVEEEDAATYYCSH   94 (111)
T ss_dssp             SCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCC-CchhcccccccccCCceEEEEE
Confidence            4678888542    2233458999964 2211 111   11111123466655433 5689999999999999999976

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=8.8e-06  Score=47.31  Aligned_cols=71  Identities=15%  Similarity=0.234  Sum_probs=44.2

Q ss_pred             eeEEEeeee--ccCCCEEEEEEcCC--c--eEEeeee----eEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEE
Q psy16425          4 RMLIEIGEM--LMAESTVAWLRVDT--Q--TILTIQT----HVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         4 ~~~~~~~~~--~~~~~~i~W~k~~~--~--~~~~~~~----~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .+.|.|...  ......+.||+...  .  .+.....    ......+|+.+..+ ..+.++|.|.+++++|+|.|.|.+
T Consensus        16 svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav   95 (113)
T d1smoa_          16 TLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVI   95 (113)
T ss_dssp             CEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCceEEEEE
Confidence            577888543  23456789998632  1  1111110    01112356776654 346788999999999999999988


Q ss_pred             Ee
Q psy16425         73 NT   74 (163)
Q Consensus        73 ~~   74 (163)
                      ..
T Consensus        96 ~~   97 (113)
T d1smoa_          96 YQ   97 (113)
T ss_dssp             CC
T ss_pred             EC
Confidence            43

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.00  E-value=3.3e-05  Score=44.90  Aligned_cols=71  Identities=15%  Similarity=0.215  Sum_probs=43.7

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCCc-e---EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDTQ-T---ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~~-~---~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...+.  ....+.||+.... .   +... ........+|+..... ..++.|.|.+++.+|++.|.|....
T Consensus        16 ~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          16 QRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKS-GTSASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             CCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCC-CCeeeeEecccCcccCceEEEeecC
Confidence            467888865433  4567999986421 1   1111 0111112345555443 3567999999999999999998743

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=8.9e-06  Score=47.21  Aligned_cols=73  Identities=14%  Similarity=0.125  Sum_probs=43.8

Q ss_pred             ceeEEEeeee------ccCCCEEEEEEcCCc--eEEee-eee---EEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEM------LMAESTVAWLRVDTQ--TILTI-QTH---VITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~------~~~~~~i~W~k~~~~--~~~~~-~~~---~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..|.|.|...      ......+.|++....  ..... ...   .....+|+.+.... .++++|.|.+++.+|+|.|.
T Consensus        16 ~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~   95 (118)
T d1qfoa_          16 SCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYN   95 (118)
T ss_dssp             SCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEE
T ss_pred             CcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCChhHCEEEE
Confidence            4688888643      122345668875321  11111 110   11234577766543 36789999999999999999


Q ss_pred             EEEEeC
Q psy16425         70 CQVNTD   75 (163)
Q Consensus        70 C~~~~~   75 (163)
                      |.+...
T Consensus        96 C~v~~~  101 (118)
T d1qfoa_          96 FRFEIS  101 (118)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.98  E-value=4.4e-05  Score=44.10  Aligned_cols=70  Identities=16%  Similarity=0.281  Sum_probs=44.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceE---E-eeeeeEE----ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTI---L-TIQTHVI----TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~---~-~~~~~~~----~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|... .....+.||++. +...   . .......    ....++.........++|.|.+++++|+|.|.|...
T Consensus        15 ~svtl~C~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~   93 (111)
T d2esve1          15 QTVTLRCDPI-SGHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVYFCASS   93 (111)
T ss_dssp             CCEEEEEECC-TTCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEEC-CCCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCceEEEeee
Confidence            4578888644 345689999873 2111   1 1111111    123456666555566899999999999999999863

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.96  E-value=1.8e-05  Score=45.31  Aligned_cols=68  Identities=15%  Similarity=0.243  Sum_probs=41.4

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCc--e-EEeeeeeEEe--cCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQ--T-ILTIQTHVIT--KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~--~-~~~~~~~~~~--~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|... .....+.||+....  + ..........  ...++..... ..+++|.|.+++++|+|.|.|..
T Consensus        16 ~~vtl~C~~s-~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~L~I~~~~~~Dsa~YyCa~   88 (104)
T d1yqvl1          16 EKVTMTCSAS-SSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGS-GTSYSLTISSMETEDAATYYCQQ   88 (104)
T ss_dssp             CCEEEEEEES-SCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEEEeC-CCCCccEEEEeeccCceEEEEecccccCCCcCceEEEecC-CCEEEEEecccCcccCCeEEEEe
Confidence            4688888764 34456899987421  1 1111111111  1234443332 35789999999999999999976

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.95  E-value=3e-05  Score=45.09  Aligned_cols=71  Identities=11%  Similarity=0.172  Sum_probs=42.6

Q ss_pred             ceeEEEeeee-ccCCCEEEEEEcC-CceEE-ee--e--eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEM-LMAESTVAWLRVD-TQTIL-TI--Q--THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~-~~~~~~i~W~k~~-~~~~~-~~--~--~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..|.|.|... ......+.||+.. +.... ..  .  .......+++...... ...++|.|.+++++|+|.|.|.+.
T Consensus        15 ~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   93 (115)
T d1fo0a_          15 TTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMR   93 (115)
T ss_dssp             CCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccccceee
Confidence            3678888643 3344568899864 11211 11  0  0000112345544432 356789999999999999999874

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.95  E-value=5.5e-05  Score=43.92  Aligned_cols=71  Identities=15%  Similarity=0.260  Sum_probs=43.6

Q ss_pred             ceeEEEeeeec-cCCCEEEEEEcC----CceEEeee----eeE--E---ecCCeEEEEeCC-CceEEEEEcccCCCCCeE
Q psy16425          3 ARMLIEIGEML-MAESTVAWLRVD----TQTILTIQ----THV--I---TKNHRIGVTHSE-TKAWYLHIREVRESDRGW   67 (163)
Q Consensus         3 ~~~~~~~~~~~-~~~~~i~W~k~~----~~~~~~~~----~~~--~---~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~   67 (163)
                      ..+.|.|.... .....|.||+..    ...+....    ...  .   ....|+...... ...++|.|.+++++|+|.
T Consensus        14 ~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~   93 (115)
T d2atpb1          14 HTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDF   93 (115)
T ss_dssp             SCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCGGGCEE
T ss_pred             CCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccCCCCCcE
Confidence            46788887654 345679999852    12111111    000  0   123355444433 456789999999999999


Q ss_pred             EEEEEE
Q psy16425         68 YMCQVN   73 (163)
Q Consensus        68 Y~C~~~   73 (163)
                      |.|.+.
T Consensus        94 Y~Ca~~   99 (115)
T d2atpb1          94 YFCATV   99 (115)
T ss_dssp             EEEEEE
T ss_pred             EEEeEc
Confidence            999874

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.92  E-value=1.9e-05  Score=45.74  Aligned_cols=70  Identities=19%  Similarity=0.219  Sum_probs=41.6

Q ss_pred             ceeEEEeeee----ccCCCEEEEEEcC-Cc-e--EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEM----LMAESTVAWLRVD-TQ-T--ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~----~~~~~~i~W~k~~-~~-~--~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|...    ......+.||+.. +. +  +... .........++..... ..+++|.|.+++++|+|.|.|.+.
T Consensus        17 ~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   95 (111)
T d1j05a_          17 QRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS-RTDFTLIIDPVEADDVATYYCQQT   95 (111)
T ss_dssp             SCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECS-SSEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecC-CCEEEEEEcccccccCccEEEeec
Confidence            3577888542    2333459999863 21 1  1111 1111112345554433 357899999999999999999763

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.91  E-value=2e-05  Score=45.53  Aligned_cols=71  Identities=21%  Similarity=0.225  Sum_probs=44.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ceEE---ee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QTIL---TI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~~---~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.........+.||++.. ....   .. .........++..... ..++.|.|.+++++|+|.|.|....
T Consensus        16 ~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~l~~~DsavYyCA~~~   91 (109)
T d1w72l1          16 QTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNS-GNMATLTISRVEAGDEADYYCQVWD   91 (109)
T ss_dssp             SCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecC-CCccceEEeeeccCCCEEEEEEecC
Confidence            467888886665667799998641 1111   10 0101112344444433 3577999999999999999998743

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.91  E-value=1.5e-05  Score=46.77  Aligned_cols=70  Identities=16%  Similarity=0.208  Sum_probs=44.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC--ceEE-ee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT--QTIL-TI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~--~~~~-~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||+...  .+.. ..  .........++..... ...+.|.|.+++++|+|.|.|...
T Consensus        17 ~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~-~~~~~L~I~~~~~~DsavYyCa~~   91 (119)
T d1f3rb2          17 DRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS-GTDYTLTISSLQPEDVATYFCYQY   91 (119)
T ss_dssp             CCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-BTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCC-CCEEEEEcccCccCCCeEEEeecc
Confidence            468888987766666799998632  1111 11  1111112344444332 245789999999999999999764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.91  E-value=1.1e-05  Score=46.60  Aligned_cols=70  Identities=20%  Similarity=0.272  Sum_probs=42.6

Q ss_pred             ceeEEEeeeecc-CCCEEEEEEcCC-c-eEEee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLM-AESTVAWLRVDT-Q-TILTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~-~~~~i~W~k~~~-~-~~~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|..... ....+.||+... . +....   .........++...... ..+.|.|.+++++|+|.|.|.+.
T Consensus        17 ~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~-~~~~L~I~~~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          17 ERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSG-TDFTLTISRLEPEDFAVYYCQQY   92 (108)
T ss_dssp             CCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCC-CEEEEEehHheecccEEEeeecC
Confidence            467788865433 445689998742 1 11111   11111223455544433 46789999999999999999873

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.91  E-value=4.4e-05  Score=44.29  Aligned_cols=70  Identities=11%  Similarity=0.301  Sum_probs=43.0

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCc-eEEee----e--e-eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQ-TILTI----Q--T-HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~-~~~~~----~--~-~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|... .....+.||+.... .....    .  . .......+..........++|.|.+++++|+|.|.|...
T Consensus        15 ~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~YyCa~~   92 (114)
T d1ogae1          15 QNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASS   92 (114)
T ss_dssp             CCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEE
T ss_pred             CCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeEEEeec
Confidence            4678888764 45678999987421 11110    0  0 111122333333333456789999999999999999774

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.89  E-value=4.1e-05  Score=44.42  Aligned_cols=69  Identities=17%  Similarity=0.222  Sum_probs=42.3

Q ss_pred             ceeEEEeeeec-----cCCCEEEEEEcC-CceE---Eee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEML-----MAESTVAWLRVD-TQTI---LTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~-----~~~~~i~W~k~~-~~~~---~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|....     .....+.||++. +...   ... .........|+..... ..+++|.|.+++++|+|.|.|..
T Consensus        18 ~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~-~~~~~L~I~~~~~~DsavYyCa~   96 (113)
T d1n4xl_          18 DQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGS-GTDFTLKISRVEAEDLGIYYCFQ   96 (113)
T ss_dssp             CCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEC-SSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeecc-CCcccCccCCCCcccCEEEEEEE
Confidence            35778887532     233578999874 2111   111 1111123455655443 35689999999999999999965

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=8.2e-05  Score=43.30  Aligned_cols=71  Identities=18%  Similarity=0.194  Sum_probs=39.5

Q ss_pred             ceeEEEeeeeccCC---CEEEEEEcCC-ceEE----ee-eeeEEe-cCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAE---STVAWLRVDT-QTIL----TI-QTHVIT-KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~---~~i~W~k~~~-~~~~----~~-~~~~~~-~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      +.+.|.|.......   ..+.||+... ....    .. ...... ...+..........++|.|.+++.+|+|.|.|.+
T Consensus        15 ~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~   94 (117)
T d1dqta_          15 GVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLCKV   94 (117)
T ss_dssp             SCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEeEEEEE
Confidence            45778887533322   2478999642 2111    00 011111 1122212222235679999999999999999987


Q ss_pred             E
Q psy16425         73 N   73 (163)
Q Consensus        73 ~   73 (163)
                      .
T Consensus        95 ~   95 (117)
T d1dqta_          95 E   95 (117)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.7e-05  Score=44.45  Aligned_cols=24  Identities=33%  Similarity=0.653  Sum_probs=21.4

Q ss_pred             CceEEEEEcccCCCCCeEEEEEEE
Q psy16425         50 TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus        50 ~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ...++|.|.+++.+|+|.|.|.+.
T Consensus        72 ~~~~~L~I~~l~~~Dsa~YyCa~~   95 (118)
T d1i8lc_          72 GNQVNLTIQGLRAMDTGLYICKVE   95 (118)
T ss_dssp             SSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEeeccccCCCEEEEEeEe
Confidence            356899999999999999999874

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.1e-05  Score=45.11  Aligned_cols=56  Identities=11%  Similarity=0.133  Sum_probs=41.2

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--------------EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--------------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--------------~~~~l~i~~v~~~~~~  156 (163)
                      ......|++++|.|.. ..|.+.+.|++++..+........              ..+.|+|.+++.+|.+
T Consensus         4 ~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG   73 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED   73 (93)
T ss_dssp             EEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCE
T ss_pred             EEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCE
Confidence            3456789999999986 458889999999877643222111              2357999999999975

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.86  E-value=3.9e-05  Score=44.43  Aligned_cols=69  Identities=20%  Similarity=0.235  Sum_probs=42.1

Q ss_pred             ceeEEEeeeec-----cCCCEEEEEEcCC-ce-EE--ee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEML-----MAESTVAWLRVDT-QT-IL--TI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~-----~~~~~i~W~k~~~-~~-~~--~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|...+     .....|.||+... .. ..  .. .........|+..... ...+.|.|.+++++|+|.|.|..
T Consensus        17 ~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s-~~~~~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          17 ESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGS-GTAFTLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             SCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEC-SSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecC-CCEEEEEECCccccCCceEEEEe
Confidence            36788886433     2345789998642 11 11  11 1111122345555443 35678999999999999999965

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.86  E-value=3.6e-05  Score=44.55  Aligned_cols=70  Identities=14%  Similarity=0.207  Sum_probs=42.4

Q ss_pred             ceeEEEeeeecc---CCCEEEEEEcC-CceE-Eee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLM---AESTVAWLRVD-TQTI-LTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~---~~~~i~W~k~~-~~~~-~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.....   ....|.||++. +... ...   .........++..... ..++.|.|.+++++|+|.|.|...
T Consensus        16 ~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~l~~~Dsa~YyCa~~   93 (112)
T d1lgva1          16 QSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKS-GNSASLTISGLQAEDEADYYCSSY   93 (112)
T ss_dssp             CCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-TTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECC-CCEeeEEeCcCccccCEEEEEeee
Confidence            467888875543   23458999864 1111 111   1111122344544443 357899999999999999999874

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.86  E-value=0.00011  Score=42.55  Aligned_cols=71  Identities=13%  Similarity=0.266  Sum_probs=44.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEE---ee-e---eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTIL---TI-Q---THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~---~~-~---~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|... .....+.||+.. +....   .. .   ........+..........+.|.|.+++++|+|.|.|.+..
T Consensus        16 ~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          16 EKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             CCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccEEeeEcc
Confidence            4677888654 345678999863 22111   10 0   11111224444554445567899999999999999998853

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=1.5e-05  Score=46.07  Aligned_cols=70  Identities=10%  Similarity=0.122  Sum_probs=43.5

Q ss_pred             ceeEEEeeeecc---CCCEEEEEEcC-CceEE--ee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLM---AESTVAWLRVD-TQTIL--TI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~---~~~~i~W~k~~-~~~~~--~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.....   ....|.||+.. +....  ..  .........|+.....+ .++.|.|.+++++|+|.|.|...
T Consensus        16 ~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~-~~~~L~I~~~~~~Dsa~YyCa~~   93 (110)
T d1oaql_          16 ETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG-NKAALTITGAQTEDEAIYFCALW   93 (110)
T ss_dssp             CEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET-TEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccc-cceeeecCCCCccccEeEEEEcc
Confidence            467888865422   22348899863 22211  11  11111224566666544 57899999999999999999874

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.84  E-value=2e-05  Score=45.45  Aligned_cols=70  Identities=16%  Similarity=0.232  Sum_probs=44.9

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEEee----eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTILTI----QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........|.||+.. +......    ....-....|+...... ....|.|.+++++|+|.|.|...
T Consensus        15 ~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~-~~~~L~I~~l~~~Dsa~YyCA~~   89 (108)
T d1nfde1          15 ETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG-TTATLTISGAQPEDEAAYYCLSS   89 (108)
T ss_dssp             SCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEETTCCGGGCSEEEEEEE
T ss_pred             CCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCC-CEeeeeEcCccccCCceEEEEee
Confidence            46788887765566678999864 2222111    01111123466655443 46789999999999999999874

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.83  E-value=5.2e-05  Score=43.91  Aligned_cols=69  Identities=20%  Similarity=0.195  Sum_probs=40.9

Q ss_pred             ceeEEEeeee-----ccCCCEEEEEEcC-CceEEe-e---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEM-----LMAESTVAWLRVD-TQTILT-I---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~-----~~~~~~i~W~k~~-~~~~~~-~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+.|.|...     ......+.||++. +..... .   .........++..... ..++.|.|.+++++|+|.|.|..
T Consensus        17 ~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~-~~~~~L~I~~~~~eDsAvYYC~~   95 (112)
T d1ncwl1          17 QPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGS-GTDFTLKISRVEAEDLGVYYCWQ   95 (112)
T ss_dssp             SCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCC-CCEEEEEECccccCcCEeEEEEc
Confidence            4577888532     2233568999863 221111 1   1111112345544433 35689999999999999999965

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.82  E-value=4.4e-05  Score=44.14  Aligned_cols=71  Identities=14%  Similarity=0.162  Sum_probs=43.5

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCC-ceEEee----eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDT-QTILTI----QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~-~~~~~~----~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      +.+.|.|.....  ....|.||+... ......    .........|+....+ ...++|.|.+++++|+|.|.|....
T Consensus        16 ~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (111)
T d1rzfl1          16 QKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKS-GTSATLGITGLQTGDEADYYCGTWD   93 (111)
T ss_dssp             SCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE-TTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred             CCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCC-CCEeeeEEeeeccccCcceEEeecC
Confidence            457888865432  445699998632 111111    1111122345555443 3568999999999999999998743

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.80  E-value=9.4e-05  Score=42.72  Aligned_cols=70  Identities=13%  Similarity=0.226  Sum_probs=42.2

Q ss_pred             ceeEEEeeeeccC-CCEEEEEEcC-CceE---Eee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMA-ESTVAWLRVD-TQTI---LTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~-~~~i~W~k~~-~~~~---~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|...+.. ...|.||+.. +...   ... .........++....+ .....|.|.+++++|+|.|.|.+.
T Consensus        14 ~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~Dsa~YyCa~~   89 (112)
T d1kgcd1          14 EPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAED-RKSSTLILHRATLRDAAVYYCILP   89 (112)
T ss_dssp             SCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTT-SSEEEEEESSCCGGGCEEEEEECC
T ss_pred             CCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeeccc-CCeeEEEEeecccccceeEeeeEe
Confidence            3678888765433 3558999963 2111   111 1111122234443333 356789999999999999999863

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.00016  Score=40.43  Aligned_cols=62  Identities=10%  Similarity=0.048  Sum_probs=38.6

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ...|.|.|... .....+.|++ ++.......    ..      .........+.|.+|+..|+|.|.|...+.
T Consensus        18 G~~VTL~C~~~-~~~~~f~L~k-~g~~~~~~~----~~------~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1          18 EKQVTICCQGN-YGAVEYQLHF-EGSLFAVDR----PK------PPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             TCCEEEEEECC-TTCCEEEEEE-TTEEEEEEC----CS------SCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEEecC-CCccEEEEEE-CCCCcceeE----Ec------cCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            35688888764 5566778888 443221100    00      000112347999999999999999997543

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.75  E-value=0.00017  Score=42.16  Aligned_cols=70  Identities=20%  Similarity=0.385  Sum_probs=44.3

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-Cce---EEee---eee--EEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQT---ILTI---QTH--VITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~---~~~~---~~~--~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .+.|.|...+  .....|.||+.. +..   +...   +..  .....+|+....+. ...+.|.|.+++++|+|.|.|.
T Consensus        18 svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~YyCA   97 (120)
T d1ypzf1          18 TAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCS   97 (120)
T ss_dssp             CEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEE
T ss_pred             cEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccccceeEEEE
Confidence            5778886433  334678999864 211   1111   111  11234577766644 4578899999999999999997


Q ss_pred             EE
Q psy16425         72 VN   73 (163)
Q Consensus        72 ~~   73 (163)
                      ..
T Consensus        98 ~~   99 (120)
T d1ypzf1          98 YG   99 (120)
T ss_dssp             EC
T ss_pred             Ec
Confidence            73

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.74  E-value=4.4e-05  Score=44.12  Aligned_cols=71  Identities=17%  Similarity=0.203  Sum_probs=43.3

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcCC-ce-EEeee---eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVDT-QT-ILTIQ---THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~~-~~-~~~~~---~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|...+.  ....+.||++.. .. .....   .......+|+....+. ...+.|.|.+++++|+|.|.|...
T Consensus        16 ~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~   94 (111)
T d1cd0a_          16 KTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSY   94 (111)
T ss_dssp             SCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEEEEeec
Confidence            457788865433  334589998642 11 11110   0001123456555433 467899999999999999999863

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.73  E-value=0.00021  Score=41.59  Aligned_cols=69  Identities=14%  Similarity=0.257  Sum_probs=43.7

Q ss_pred             eeEEEeeeec----cCCCEEEEEEcC-CceEEee------eeeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          4 RMLIEIGEML----MAESTVAWLRVD-TQTILTI------QTHVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         4 ~~~~~~~~~~----~~~~~i~W~k~~-~~~~~~~------~~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .+.|.|...+    .....+.||++. +..+...      +....  ...+|+.+..+. ...+.|+|.+++++|++.|.
T Consensus        17 sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eDsAvYy   96 (120)
T d2agjh1          17 TLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYY   96 (120)
T ss_dssp             EEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGGCEEEE
T ss_pred             CEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeeccceEEe
Confidence            5778886543    233568899863 1211111      11111  125688877654 35688999999999999999


Q ss_pred             EEE
Q psy16425         70 CQV   72 (163)
Q Consensus        70 C~~   72 (163)
                      |..
T Consensus        97 CAr   99 (120)
T d2agjh1          97 CAR   99 (120)
T ss_dssp             EEE
T ss_pred             eEe
Confidence            975

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.72  E-value=0.00014  Score=41.92  Aligned_cols=70  Identities=17%  Similarity=0.279  Sum_probs=42.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEEe----ee-eeEE--ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTILT----IQ-THVI--TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~~----~~-~~~~--~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|... .....+.||++. +.....    .. ....  ....+.........+..|.|.+++++|+|.|.|...
T Consensus        15 ~svtl~C~~s-~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavYyCA~~   92 (112)
T d2bnub1          15 QSMTLQCAQD-MNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASS   92 (112)
T ss_dssp             CCEEEEEEES-SCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEEEE-CCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEEEEeec
Confidence            3577888654 456789999863 222111    11 1111  112334444444456789999999999999999774

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.69  E-value=6.9e-05  Score=43.39  Aligned_cols=70  Identities=13%  Similarity=0.246  Sum_probs=43.1

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ce---EEe-eeeeEE---ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QT---ILT-IQTHVI---TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~---~~~-~~~~~~---~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.... ....+.||++.. ..   +.. ......   ....|+.........++|.|.+++++|+|.|.|...
T Consensus        17 ~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   94 (113)
T d1nfdb1          17 GRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASS   94 (113)
T ss_dssp             CCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEEECEEEE
T ss_pred             CCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCceeEEEEee
Confidence            45778887543 456799999742 11   111 111111   123455544444456789999999999999999874

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=8.8e-05  Score=41.82  Aligned_cols=63  Identities=14%  Similarity=0.176  Sum_probs=38.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..|.|.|... .+...+.|++.+.......        .+ ...........+.|.+|+..|+|.|.|...+.
T Consensus        22 ~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~--------~~-~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~   84 (99)
T d1ucta1          22 GSVKIQCQAI-REAYLTQLMIIKNSTYREI--------GR-RLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   84 (99)
T ss_dssp             CCEEEEECCC-TTCSEEEEEEEETTEEEEC--------SE-ECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CeEEEEEcCC-CCCcEEEEEECCCcCceec--------cc-cccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence            4688888764 5667888998433222110        00 00001112237899999999999999998654

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.64  E-value=6.4e-05  Score=44.05  Aligned_cols=72  Identities=14%  Similarity=0.106  Sum_probs=44.5

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcC--CceE-Eeee--eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVD--TQTI-LTIQ--THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~--~~~~-~~~~--~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|...+.  ....+.||++.  +.+. ....  .......+|+....+. ...++|.|.+++++|+|.|.|....
T Consensus        17 ~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          17 VPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             CCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCceeecCccc
Confidence            357788865433  34679999852  2222 1111  1111223566655543 3468999999999999999998743

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.64  E-value=2.6e-06  Score=48.23  Aligned_cols=71  Identities=21%  Similarity=0.309  Sum_probs=42.6

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-Cce----EEeeeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQT----ILTIQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~----~~~~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+.|.|.... ....|.||++. +..    +...........+|+....+. ...++|.|.+++++|+|.|.|.+..
T Consensus         9 ~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   85 (96)
T d1ymmd1           9 ENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDT   85 (96)
T ss_dssp             CCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEE
T ss_pred             CCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEeEec
Confidence            35677776543 45679999853 111    111111112234555544332 2456899999999999999998743

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.0004  Score=39.69  Aligned_cols=80  Identities=10%  Similarity=0.089  Sum_probs=41.5

Q ss_pred             eeEEEeeeec-cC--CCEEEEEEcCCceEEeeeee-EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--
Q psy16425          4 RMLIEIGEML-MA--ESTVAWLRVDTQTILTIQTH-VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--   77 (163)
Q Consensus         4 ~~~~~~~~~~-~~--~~~i~W~k~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--   77 (163)
                      .+.|.|...+ .|  .+.|.|++ ++..+...... .....+.+...      ..|.+......+...|+|++.+...  
T Consensus        18 ~~~l~C~v~~~~P~~~~~i~W~~-g~~~~~~~~~~~~~~~~~~~~~~------s~l~~~~~~~D~g~~ltC~a~~~~~~~   90 (109)
T d1vcaa1          18 PITVKCSVADVYPFDRLEIDLLK-GDHLMKSQEFLEDADRKSLETKS------LEVTFTPVIEDIGKVLVCRAKLHIDEM   90 (109)
T ss_dssp             CEEEEEEEEEEBSGGGEEEEEEE-TTEEEEEEECCSCCSSCCCEEEE------EEEEECCCGGGTTCEEEEEEEECSCCC
T ss_pred             eEEEEeEeCCcCCCCceEEEEec-cCceeeccccccccccCCcceee------EEEEccCChHHCCcEEEEEEEcCcCCc
Confidence            4666776544 34  34789999 55554321111 11111222211      2566765555566689999975421  


Q ss_pred             ------ceEeEEEEEEcCC
Q psy16425         78 ------KSQVGYLEVVVPP   90 (163)
Q Consensus        78 ------~~~~~~l~v~~~p   90 (163)
                            ......|.|+++|
T Consensus        91 ~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          91 DSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             TTSCSEEEEEEECCEECCC
T ss_pred             cccccccceeEEeEEEeCC
Confidence                  1223346677655

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.58  E-value=0.00038  Score=40.82  Aligned_cols=70  Identities=20%  Similarity=0.256  Sum_probs=43.9

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-Cce---EEee---eeeEE---ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQT---ILTI---QTHVI---TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~---~~~~---~~~~~---~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  .....|.||++. +..   +...   +....   ...+|+...... ...+.|.|.+++++|+|.|.|
T Consensus        18 t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyC   97 (123)
T d1hxmb1          18 TARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYC   97 (123)
T ss_dssp             CEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccccCcEEEE
Confidence            4567776543  345678999863 211   1111   11111   124578777644 356789999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        98 A~~  100 (123)
T d1hxmb1          98 ALW  100 (123)
T ss_dssp             EEE
T ss_pred             eee
Confidence            873

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.57  E-value=8.9e-05  Score=42.81  Aligned_cols=70  Identities=17%  Similarity=0.302  Sum_probs=41.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCC-ceE---Eee-e---eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDT-QTI---LTI-Q---THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~---~~~-~---~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|... .....+.||++.. ...   ... .   ........+............|.|.+++++|+|.|.|.+.
T Consensus        14 ~svtL~C~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~   91 (112)
T d2cdeb1          14 KKITLECSQT-MGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLCASS   91 (112)
T ss_dssp             CCBCCEEEET-TCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEEEEEEE
T ss_pred             CCEEEEEEEe-CCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccEEEEEe
Confidence            3567777654 3456899999742 111   111 0   0111112233333333456789999999999999999874

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.00051  Score=39.42  Aligned_cols=72  Identities=14%  Similarity=0.315  Sum_probs=45.4

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC--CceEEee---e---eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD--TQTILTI---Q---THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~--~~~~~~~---~---~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .+.|.|...+  .....+.|++..  .......   .   .......+|+.+..+. .+.+.|+|.+++.+|+|.|.|..
T Consensus        12 svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa~YyCa~   91 (110)
T d1u9ka_          12 TLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVI   91 (110)
T ss_dssp             CEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCEEEEEEE
Confidence            5777787553  355678999953  2111111   0   0011224577776543 46788999999999999999998


Q ss_pred             EeC
Q psy16425         73 NTD   75 (163)
Q Consensus        73 ~~~   75 (163)
                      ...
T Consensus        92 ~~~   94 (110)
T d1u9ka_          92 YHP   94 (110)
T ss_dssp             ECT
T ss_pred             eCC
Confidence            543

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.45  E-value=0.00091  Score=38.78  Aligned_cols=70  Identities=10%  Similarity=0.226  Sum_probs=44.4

Q ss_pred             eeEEEeeeeccC----CCEEEEEEcC-CceEEeeee------eEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          4 RMLIEIGEMLMA----ESTVAWLRVD-TQTILTIQT------HVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         4 ~~~~~~~~~~~~----~~~i~W~k~~-~~~~~~~~~------~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .+.|.|...+..    .-.+.|+++. +..+.....      -.+  ...+|+.++.+. ...+.|+|.+++.+|++.|.
T Consensus        17 sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~eDtAvYY   96 (120)
T d1ai1h1          17 SLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYY   96 (120)
T ss_dssp             CEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             CEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeeccceeEEE
Confidence            577778765532    2367899863 222211111      111  124688877765 35688999999999999999


Q ss_pred             EEEE
Q psy16425         70 CQVN   73 (163)
Q Consensus        70 C~~~   73 (163)
                      |...
T Consensus        97 CAr~  100 (120)
T d1ai1h1          97 CSRE  100 (120)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9753

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.36  E-value=0.0014  Score=37.71  Aligned_cols=70  Identities=13%  Similarity=0.230  Sum_probs=45.2

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      + .-.  ....+|+.+..+. ...+.|+|.+++.+|++.|.|
T Consensus        16 sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eDtAvYYC   95 (117)
T d1um5h1          16 SVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSEDSAVYYC   95 (117)
T ss_dssp             CEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCcceEEEE
Confidence            4666776654  455678999863 2222111      1 111  1235788887664 456789999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        96 Ar~   98 (117)
T d1um5h1          96 ARS   98 (117)
T ss_dssp             EEE
T ss_pred             eec
Confidence            753

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=0.00087  Score=37.82  Aligned_cols=71  Identities=10%  Similarity=0.144  Sum_probs=40.2

Q ss_pred             ceeEEEeeeecc--CCCEEEEEEcC-CceEEe------ee-eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEMLM--AESTVAWLRVD-TQTILT------IQ-THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~~--~~~~i~W~k~~-~~~~~~------~~-~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      +.+.|.|...+.  ..-.+.|+++. ++.+..      .. ...  ....+|+.++.+. ...+.|+|.+++++|++.|.
T Consensus         3 ~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAvYY   82 (103)
T d1oari_           3 ASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYY   82 (103)
T ss_dssp             CCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSEEE
T ss_pred             CCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEEEE
Confidence            356677776543  44578999863 121111      11 111  1235788887765 35678999999999999999


Q ss_pred             EEEE
Q psy16425         70 CQVN   73 (163)
Q Consensus        70 C~~~   73 (163)
                      |...
T Consensus        83 CAr~   86 (103)
T d1oari_          83 CARM   86 (103)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            9763

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.33  E-value=0.0016  Score=37.26  Aligned_cols=69  Identities=14%  Similarity=0.402  Sum_probs=44.0

Q ss_pred             eeEEEeeee--ccCCCEEEEEEcC-CceEEee------ee-eE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEM--LMAESTVAWLRVD-TQTILTI------QT-HV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~--~~~~~~i~W~k~~-~~~~~~~------~~-~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...  ....-.+.|+++. +..+...      .. ..  ....+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eDtAvYYC   96 (114)
T d1indh1          17 SLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDTALYFC   96 (114)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCcccEEEE
Confidence            455666554  3455678999864 2222111      11 11  1224688887755 456789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 A~   98 (114)
T d1indh1          97 AS   98 (114)
T ss_dssp             EC
T ss_pred             CC
Confidence            75

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.31  E-value=0.0033  Score=36.12  Aligned_cols=70  Identities=17%  Similarity=0.282  Sum_probs=46.2

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-e--eEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-T--HVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~--~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      . .  ......+|+.++.+. ...+.|.|.+++.+|++.|.|
T Consensus        17 sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYC   96 (117)
T d1iqdb1          17 SVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDDTAVYYC   96 (117)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCcceEEEE
Confidence            5667776554  455678999863 2222111      1 1  112346788888765 356789999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        97 A~~   99 (117)
T d1iqdb1          97 AVP   99 (117)
T ss_dssp             EEC
T ss_pred             eEc
Confidence            873

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0015  Score=37.79  Aligned_cols=34  Identities=6%  Similarity=0.242  Sum_probs=26.0

Q ss_pred             CCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEE
Q psy16425         40 NHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus        40 ~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      .+++.+.... ...++|.|.+++++|+|.|.|.+.
T Consensus        63 ~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCa~~   97 (118)
T d1yjdc1          63 KTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIE   97 (118)
T ss_dssp             SSSCEEEEEECSSEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCcEEEEEECCCCeEEEEECCCCcccCeEEEEEEe
Confidence            4455555433 456789999999999999999874

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.29  E-value=0.00098  Score=38.36  Aligned_cols=69  Identities=10%  Similarity=0.256  Sum_probs=43.5

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      + ...+  ...+|+.+..+. .....|.|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eDtAvYYC   96 (115)
T d1f3dh1          17 SVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFEDSAVYYC   96 (115)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCCcEEEEE
Confidence            4667776544  345678999863 2222111      1 1111  124678777654 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (115)
T d1f3dh1          97 AN   98 (115)
T ss_dssp             EE
T ss_pred             ec
Confidence            65

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.0021  Score=36.92  Aligned_cols=69  Identities=14%  Similarity=0.225  Sum_probs=44.9

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++- +..+...      . .-.+  ...+|+.++.+. .....|+|.+++.+|++.|.|
T Consensus        17 sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eDTAvYYC   96 (117)
T d1jnhb1          17 SVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVYSC   96 (117)
T ss_dssp             CEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCcceEEEE
Confidence            4667776654  455678999863 2222111      1 1111  224688887755 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (117)
T d1jnhb1          97 SR   98 (117)
T ss_dssp             EE
T ss_pred             ee
Confidence            75

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.0017  Score=37.66  Aligned_cols=70  Identities=11%  Similarity=0.227  Sum_probs=45.1

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee-------eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ-------THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~-------~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+....       ...  ..-.+|+.+..+. .+.+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eDtA~YYC   96 (120)
T d1pg7x1          17 SVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSAVYYC   96 (120)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCcceEEEe
Confidence            4667776543  345678999873 22221111       111  1124688877654 456789999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        97 Ar~   99 (120)
T d1pg7x1          97 ARE   99 (120)
T ss_dssp             EEE
T ss_pred             eec
Confidence            863

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.26  E-value=0.0011  Score=38.36  Aligned_cols=69  Identities=13%  Similarity=0.272  Sum_probs=44.3

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------eeeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------QTHVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      +...+  ...+|+.+..+. ...+.|.|.+++.+|++.|.|.
T Consensus        17 sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDtA~YYCA   96 (120)
T d1dn0b1          17 TLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCA   96 (120)
T ss_dssp             CEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccccEEEEE
Confidence            4667776554  344578899873 1211111      11111  125688888764 4568899999999999999995


Q ss_pred             E
Q psy16425         72 V   72 (163)
Q Consensus        72 ~   72 (163)
                      .
T Consensus        97 r   97 (120)
T d1dn0b1          97 R   97 (120)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.25  E-value=0.00085  Score=38.67  Aligned_cols=69  Identities=13%  Similarity=0.237  Sum_probs=44.3

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee------e-eE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ------T-HV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~------~-~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...+      . ..  ....+|+.+..+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eDtAvYYC   96 (118)
T d1nlbh1          17 TVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNEDTATYFC   96 (118)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCcceEEEE
Confidence            4666676654  455678999863 22221111      0 11  1235688877754 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (118)
T d1nlbh1          97 AR   98 (118)
T ss_dssp             EE
T ss_pred             ee
Confidence            64

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.0016  Score=35.04  Aligned_cols=55  Identities=18%  Similarity=0.441  Sum_probs=35.6

Q ss_pred             cCCCEEEEEEcCCceEEeeeeeEEecCCeE--EEEeCC-CceEEEEEcccCCCCCeEEEEEEE
Q psy16425         14 MAESTVAWLRVDTQTILTIQTHVITKNHRI--GVTHSE-TKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus        14 ~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~--~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ...|.++|-|.++..-...     +.....  .....+ -.-+.|.+..+-++|.|.|+|.++
T Consensus        31 ~~RPnVtWCKlngt~cv~L-----e~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSan   88 (104)
T d1xaua_          31 VHRPNVTWCKHNGTIWVPL-----EVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN   88 (104)
T ss_dssp             SSCCCEEEEEECSSSEEEC-----CCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             cCCCCcEEEEeCCcEEEEe-----ecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecC
Confidence            3568899999776543322     111111  222222 245688999999999999999994

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.22  E-value=0.0022  Score=37.04  Aligned_cols=70  Identities=13%  Similarity=0.302  Sum_probs=45.1

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------eeeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------QTHVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      +...+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|.
T Consensus        16 sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCA   95 (119)
T d1kxvc_          16 SLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYYCK   95 (119)
T ss_dssp             CEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCcceEeee
Confidence            4667776554  345568899863 2222111      11111  124688888765 4567899999999999999997


Q ss_pred             EE
Q psy16425         72 VN   73 (163)
Q Consensus        72 ~~   73 (163)
                      ..
T Consensus        96 r~   97 (119)
T d1kxvc_          96 PS   97 (119)
T ss_dssp             EE
T ss_pred             ec
Confidence            63

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0015  Score=36.11  Aligned_cols=56  Identities=14%  Similarity=0.080  Sum_probs=37.5

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      ..+|.|.|... .....+.|+|.+.......              ........+.|.+|+..|+|.|+|..
T Consensus        18 G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~--------------~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          18 GEKVTFYCRLD-TATSMFLLLKEGRSSHVQR--------------GYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             TCEEEEEEECS-SSCSEEEEEEESSSCEEEE--------------EECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCcEEEEECCC-CCCCEEEEEECCCccceee--------------cCCCceeEEEecccChhcCceEEEEe
Confidence            35788888764 5667788898543322110              00112347999999999999999975

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00035  Score=39.06  Aligned_cols=59  Identities=7%  Similarity=0.048  Sum_probs=37.8

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+|.|.|.........+.|+|.+.....          . .. .  ......+.|.+++.+|+|.|.|....
T Consensus        19 G~~VTL~C~~~~~~~~~f~L~k~g~~~~~----------~-~~-~--~~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2          19 GENISLTCSSAHIPFDRFSLAKEGELSLP----------Q-HQ-S--GEHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             TCCCEEEEECSSSCCSEEEEEETTCSSCC----------S-EE-E--CSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             CCeEEEEEeCCCCCceEEEEEECCcccce----------E-Ec-C--CCcccEEEEeccccccCcEEEEEEEc
Confidence            35788888754445557789994432211          0 00 0  11124799999999999999998743

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.21  E-value=0.0017  Score=37.37  Aligned_cols=70  Identities=14%  Similarity=0.258  Sum_probs=45.3

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEE------eeeeeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTIL------TIQTHVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~------~~~~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .+.|.|...+  ...-.+.|+++. +..+.      ..+...+  ...+|+.+..+. ...+.|+|.+++.+|++.|.|.
T Consensus        17 sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDtAvYyCA   96 (116)
T d7fabh1          17 TLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTAVYYCA   96 (116)
T ss_dssp             CEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccceEEEee
Confidence            4667776554  455678999873 21111      1111111  225788877654 4568899999999999999998


Q ss_pred             EE
Q psy16425         72 VN   73 (163)
Q Consensus        72 ~~   73 (163)
                      ..
T Consensus        97 r~   98 (116)
T d7fabh1          97 RN   98 (116)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.21  E-value=0.0017  Score=38.33  Aligned_cols=70  Identities=16%  Similarity=0.258  Sum_probs=43.5

Q ss_pred             eeEEEeeeeccC----CCEEEEEEcC-CceEEee------eeeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          4 RMLIEIGEMLMA----ESTVAWLRVD-TQTILTI------QTHV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         4 ~~~~~~~~~~~~----~~~i~W~k~~-~~~~~~~------~~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .+.|.|...+..    ...+.|+++. +..+...      +...  ....+|+.+..+. ...+.|+|.+++++|++.|.
T Consensus        17 Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~eDtAvYY   96 (132)
T d1tjgh1          17 TLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVDTATYF   96 (132)
T ss_dssp             CEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcccceEEE
Confidence            466777655432    2368899863 1111111      1111  1125688877654 35678999999999999999


Q ss_pred             EEEE
Q psy16425         70 CQVN   73 (163)
Q Consensus        70 C~~~   73 (163)
                      |...
T Consensus        97 CAr~  100 (132)
T d1tjgh1          97 CAHR  100 (132)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9863

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.21  E-value=0.0016  Score=37.22  Aligned_cols=69  Identities=9%  Similarity=0.014  Sum_probs=41.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcC-CceEEee----e----eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVD-TQTILTI----Q----THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~-~~~~~~~----~----~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+.|.|.........+.||++. +......    .    ........++.....  .+.+|.|..++++|++.|.|...
T Consensus        17 ~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~--~~~~l~l~~~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          17 QAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV--TDTELRLQVANMSQGRTLYCTCS   94 (112)
T ss_dssp             CCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE--ETTEEEEEEESCCSCEEEEEEEE
T ss_pred             CCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc--cccEEEEecCCccCCccEEEEEe
Confidence            46788887665566789999974 2221111    0    011112334443322  22378899999999999999874

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0002  Score=40.04  Aligned_cols=30  Identities=33%  Similarity=0.715  Sum_probs=25.2

Q ss_pred             CCCcEEEEeEecc-CCCCeEEEEECCeEEEe
Q psy16425        105 EGSNVTLKCAASG-SPKPNITWRREGGELIA  134 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~  134 (163)
                      .++.+.|.|.+.| +|.|.+.|++++..+..
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~   45 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNA   45 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecc
Confidence            4677899999986 79999999999987643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.0023  Score=35.75  Aligned_cols=61  Identities=11%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             eEEEeee--eccCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGE--MLMAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~--~~~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|..  .-.....|+|++ ++..+...  .......++.+....      .|.+   ..++.+.|+|.+...
T Consensus        21 ~tL~C~v~gf~P~~i~V~W~~-~g~~~~~~~~~~~~~~~dgtf~~~s------~l~v---~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          21 NILNCYVTQFHPPHIEIQMLK-NGKKIPKVEMSDMSFSKDWSFYILA------HTEF---TPTETDTYACRVKHD   85 (99)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEE-TTEECTTCEEEEEEECTTCCEEEEE------EEEE---CCCSSCCEEEEEECT
T ss_pred             EEEEEEEEEEECCCcEEEEee-CCeecCCcEECceeECCCCCEEEEE------EeEe---cCcCCCEEEEEEEeC
Confidence            3444544  444667899999 55543211  111223333333221      3444   355667899999654

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.18  E-value=0.0021  Score=36.80  Aligned_cols=69  Identities=12%  Similarity=0.239  Sum_probs=44.1

Q ss_pred             eeEEEeeee--ccCCCEEEEEEcC-CceEEee------ee-e--EEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEM--LMAESTVAWLRVD-TQTILTI------QT-H--VITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~--~~~~~~i~W~k~~-~~~~~~~------~~-~--~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...  ....-.+.|+++. +..+...      .. -  .....+|+.++.+. ...+.|.|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~eDtAvYYC   96 (116)
T d1mjuh1          17 SVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYC   96 (116)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCCCceEEEE
Confidence            456666654  3556778899863 2222111      11 1  11224688887655 356889999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (116)
T d1mjuh1          97 AN   98 (116)
T ss_dssp             EE
T ss_pred             cc
Confidence            75

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.18  E-value=0.001  Score=37.72  Aligned_cols=69  Identities=13%  Similarity=0.248  Sum_probs=42.5

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------eeeE--EecCCeEEEEeCCC-ceEEEEEcccCCCCCeEEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------QTHV--ITKNHRIGVTHSET-KAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~~~~--~~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      +...  ....+|+.++.+.. ..+.|+|.+++.+|++.|.|.
T Consensus        10 sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA   89 (107)
T d1sjva_          10 SLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTAVYYCY   89 (107)
T ss_dssp             CEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCSEEEEE
T ss_pred             CcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccceeeeEe
Confidence            4566665543  455678899863 1111111      1111  12246888887653 567899999999999999997


Q ss_pred             E
Q psy16425         72 V   72 (163)
Q Consensus        72 ~   72 (163)
                      .
T Consensus        90 ~   90 (107)
T d1sjva_          90 T   90 (107)
T ss_dssp             E
T ss_pred             c
Confidence            6

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.18  E-value=0.0017  Score=37.40  Aligned_cols=71  Identities=15%  Similarity=0.308  Sum_probs=44.8

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      . ...+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDtAvYYC   96 (118)
T d2fbjh1          17 SLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYC   96 (118)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCcceEEEe
Confidence            4556666544  344578899863 2222111      1 1111  235688888765 356789999999999999999


Q ss_pred             EEEe
Q psy16425         71 QVNT   74 (163)
Q Consensus        71 ~~~~   74 (163)
                      ....
T Consensus        97 Ar~~  100 (118)
T d2fbjh1          97 ARLH  100 (118)
T ss_dssp             EEEE
T ss_pred             eEec
Confidence            8643

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.15  E-value=0.003  Score=36.44  Aligned_cols=69  Identities=17%  Similarity=0.317  Sum_probs=44.9

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------ee-eEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------QT-HVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~~-~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      +. -.+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eDTAvYYC   96 (119)
T d1rz7h1          17 TVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSEDTAVYYC   96 (119)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcccceEEEE
Confidence            4666676654  455678999863 2222111      11 111  224688887755 466789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (119)
T d1rz7h1          97 AA   98 (119)
T ss_dssp             EE
T ss_pred             ee
Confidence            76

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0028  Score=34.85  Aligned_cols=57  Identities=9%  Similarity=0.239  Sum_probs=41.5

Q ss_pred             CCCEEEEEEcC--CceEEe-eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425         15 AESTVAWLRVD--TQTILT-IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus        15 ~~~~i~W~k~~--~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ..-.|.|.+..  +..... .+...+...+.+.++.++    +|.|.++...|+|.|...+.+.
T Consensus        26 ~iddIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~~nG----tLkIK~L~~~d~GtYkv~vYd~   85 (101)
T d1hnfa1          26 DIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG----TLKIKHLKTDDQDIYKVSIYDT   85 (101)
T ss_dssp             SEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS----CEEECSCCGGGCEEEEEEEEET
T ss_pred             CcceeEEEecCCCcceeeecccCCCCCCCceEEEccCC----cEEeeeeeecCCCcEEEEEEcC
Confidence            34579999942  333322 233345666778888877    9999999999999999999765

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.15  E-value=0.0026  Score=36.82  Aligned_cols=70  Identities=14%  Similarity=0.256  Sum_probs=45.6

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee-------eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ-------THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~-------~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+....       ...  ....+|+.++.+. ...+.|.|.+++.+|++.|.|
T Consensus        18 sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eDtA~YYC   97 (122)
T d1vgeh1          18 SVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYC   97 (122)
T ss_dssp             CEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCcceEEEE
Confidence            4667776654  455678999863 22221111       111  1235788887765 356789999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        98 Ar~  100 (122)
T d1vgeh1          98 ARD  100 (122)
T ss_dssp             EEE
T ss_pred             eec
Confidence            763

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.15  E-value=0.004  Score=34.55  Aligned_cols=63  Identities=11%  Similarity=0.053  Sum_probs=37.9

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+|.|.|... .....+.++|.+.........         ...........+.|.+|+..|+|.|.|....
T Consensus        16 G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~---------~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1          16 EETVILQCWSD-VMFEHFLLHREGMFNDTLRLI---------GEHHDGVSKANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             TCCEEEEEEES-SCCSEEEEEEESSSCEEEEEE---------CEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCcEEEEECCC-CCCCEEEEEECCCcCCceeee---------eeecCCceEEEEEEcccCcccCeEEEEEEEc
Confidence            35688888764 555677788854332211000         0011111224799999999999999998743

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.14  E-value=0.0017  Score=37.71  Aligned_cols=69  Identities=13%  Similarity=0.271  Sum_probs=43.8

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      . .-.+  ...+|+.+..+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eDtAvYYC   96 (121)
T d1j05b_          17 SVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYC   96 (121)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCcceEEEe
Confidence            4667776543  445678999873 2211111      1 1111  224688777654 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (121)
T d1j05b_          97 AP   98 (121)
T ss_dssp             EE
T ss_pred             Ee
Confidence            76

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.13  E-value=0.0028  Score=36.55  Aligned_cols=70  Identities=14%  Similarity=0.219  Sum_probs=44.9

Q ss_pred             eeEEEeeeeccCC---CEEEEEEcC-CceEEeee------eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEMLMAE---STVAWLRVD-TQTILTIQ------THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~~~~---~~i~W~k~~-~~~~~~~~------~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+...   -.+.|+++. +..+....      .-.  ....+|+.++.+. ...+.|.|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eDTAvYYC   96 (119)
T d1ncwh1          17 SLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTEDTATYYC   96 (119)
T ss_dssp             CEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCCceEEEE
Confidence            5677887766543   257898862 22221111      111  1224688887765 356889999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        97 Ar~   99 (119)
T d1ncwh1          97 AGL   99 (119)
T ss_dssp             EEE
T ss_pred             eEe
Confidence            753

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.13  E-value=0.0028  Score=36.60  Aligned_cols=69  Identities=12%  Similarity=0.300  Sum_probs=44.6

Q ss_pred             eeEEEeeee--ccCCCEEEEEEcC-CceEEeee-------eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEM--LMAESTVAWLRVD-TQTILTIQ-------THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~--~~~~~~i~W~k~~-~~~~~~~~-------~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...  ....-.+.|+++. +..+....       ...+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eDtAvYYC   96 (121)
T d2p49b1          17 SLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDTATYYC   96 (121)
T ss_dssp             CEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccceeEEee
Confidence            456666554  3456778999863 12111111       1111  224688888765 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (121)
T d2p49b1          97 AA   98 (121)
T ss_dssp             EE
T ss_pred             ec
Confidence            86

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.12  E-value=0.0024  Score=36.22  Aligned_cols=70  Identities=13%  Similarity=0.340  Sum_probs=45.0

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeeee-----------eEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQT-----------HVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~~-----------~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y   68 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...+.           ....-.+|+.++.+. ...+.|.|.+++.+|++.|
T Consensus        17 Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~eDTAvY   96 (109)
T d2ck0h1          17 SLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKTEDTGIY   96 (109)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCHhHCEEE
Confidence            4667776543  445688999863 222211110           011224688877755 4568899999999999999


Q ss_pred             EEEEE
Q psy16425         69 MCQVN   73 (163)
Q Consensus        69 ~C~~~   73 (163)
                      .|...
T Consensus        97 YCAr~  101 (109)
T d2ck0h1          97 YCVRG  101 (109)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99863

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.11  E-value=0.0032  Score=35.19  Aligned_cols=61  Identities=7%  Similarity=-0.005  Sum_probs=36.3

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      ..+|.|.|... .+...+.|+|.+........           ........+.+.|..+...|+|.|.|....
T Consensus        20 G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-----------~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2          20 GENVTLSCSSR-SSYDMYHLSREGEAHERRLP-----------AGPKVNGTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             TCEEEEEEEES-SCCSEEEEEETTCSSCEEEE-----------CEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             CCeEEEEECCC-CCccEEEEEECCCccccEEE-----------ccccCCccEEEEEeccccccCEEEEEEeec
Confidence            35788888654 56677888984322211000           000011223567888889999999998743

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.10  E-value=0.0034  Score=36.88  Aligned_cols=70  Identities=13%  Similarity=0.324  Sum_probs=45.1

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeE--EecCCeEEEEeCCC-ceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THV--ITKNHRIGVTHSET-KAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~--~~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|-..+  ...-.+.|+++. +..+...      . .-.  ....+|+.++.+.. ..+.|.|.+++.+|++.|+|
T Consensus        17 Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eDTAvYYC   96 (135)
T d1ieha_          17 SLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSEDTAVYYC   96 (135)
T ss_dssp             EEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSSCEEEEE
T ss_pred             CeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcccceeeEE
Confidence            4566666544  455678999863 2111111      1 111  12357888887653 56789999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        97 Ar~   99 (135)
T d1ieha_          97 AKY   99 (135)
T ss_dssp             EEB
T ss_pred             EEe
Confidence            763

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.09  E-value=0.0025  Score=35.69  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=33.3

Q ss_pred             eEEEeeeec--cCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEML--MAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~--~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +.|.|...+  .+...|.|++ ++..+..   ........++.+....      .|.+.   .++.+.|+|.+...+
T Consensus        20 ~tL~C~v~gFyP~~i~v~W~~-ng~~v~~~~~~t~~~~~~dgtf~~~s------~l~v~---~~~~~~ytC~V~H~s   86 (100)
T d1muja1          20 NTLICFVDNIFPPVINITWLR-NSKSVADGVYETSFFVNRDYSFHKLS------YLTFI---PSDDDIYDCKVEHWG   86 (100)
T ss_dssp             EEEEEEEEEECSSCCEEEEEE-SSSBCCSSEEECCCEECTTSCEEEEE------EEEEC---CCTTCCEEEEEECTT
T ss_pred             EEEEEEEEeEECCCCEEEEEe-CCeeccCCceeeeeEECCCCCEEEEE------EeEEc---CCCCCEEEEEEEECC
Confidence            345555444  4678999999 5555421   1111122333333222      34443   456678999996553

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.09  E-value=0.0021  Score=36.96  Aligned_cols=69  Identities=16%  Similarity=0.333  Sum_probs=45.3

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      + ...+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eDTAvYYC   96 (117)
T d1jpth1          17 SLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYC   96 (117)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCCceEEEE
Confidence            4667777665  456788999863 2222111      1 1111  235788887765 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (117)
T d1jpth1          97 AR   98 (117)
T ss_dssp             EE
T ss_pred             ee
Confidence            65

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.07  E-value=0.0052  Score=34.17  Aligned_cols=62  Identities=18%  Similarity=0.275  Sum_probs=32.9

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ++|.+...-.+...|.|++ ++..+..   ........++.++.         +..-.+...+...|+|.+...+
T Consensus        23 L~C~v~~F~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgtf~~---------~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          23 LVCSVNGFYPGSIEVRWFR-NGQEEKTGVVSTGLIQNGDWTFQT---------LVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             EEEEEEEEBSSCCEEEEEE-TTEECCSSEEECCCEECSSSCEEE---------EEEEECCCCTTCEEEEEEECTT
T ss_pred             EEEEEeeeECCCcEEEEEE-CCEEcCCCCEECeEEeCCCcEEEE---------EEEeeEcCCCCCEEEEEEEECC
Confidence            3444445556668999999 5544311   11111222233321         1223445677889999996553

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.07  E-value=0.0017  Score=37.81  Aligned_cols=69  Identities=14%  Similarity=0.267  Sum_probs=41.9

Q ss_pred             eeEEEeeeecc----CCCEEEEEEcC-CceEEee------eeeEEe--cCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          4 RMLIEIGEMLM----AESTVAWLRVD-TQTILTI------QTHVIT--KNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         4 ~~~~~~~~~~~----~~~~i~W~k~~-~~~~~~~------~~~~~~--~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .+.|.|...+.    ....+.|+++. +..+...      +...+.  -.+|+.+..+. ...+.|+|.+++++|++.|.
T Consensus        17 sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~eDsAvYy   96 (123)
T d1r0ah1          17 PFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETADTAIYY   96 (123)
T ss_dssp             CEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccccceEEe
Confidence            46777765432    22357899862 1111111      111111  23577777654 34578999999999999999


Q ss_pred             EEE
Q psy16425         70 CQV   72 (163)
Q Consensus        70 C~~   72 (163)
                      |..
T Consensus        97 CAr   99 (123)
T d1r0ah1          97 CAQ   99 (123)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            975

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0041  Score=34.77  Aligned_cols=61  Identities=15%  Similarity=0.262  Sum_probs=32.5

Q ss_pred             EEEeee--eccCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          6 LIEIGE--MLMAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         6 ~~~~~~--~~~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .|.|.+  +-.+...|.|.+ ++..+...  .......++.+....      .|.+   ..++.+.|+|.+...+
T Consensus        23 tL~C~~~gFyP~~i~v~W~~-ng~~v~~~~~~~~~~~~dgty~~~s------~l~v---~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          23 FLNCYVSGFHPSDIEVDLLK-NGERIEKVEHSDLSFSKDWSFYLLY------YTEF---TPTEKDEYACRVNHVT   87 (100)
T ss_dssp             EEEEEEEEEBSSCCEEEEEE-TTEECTTCEECCCEECTTSCEEEEE------EEEE---CCCSSCCEEEEEECTT
T ss_pred             EEEEEECccCCCCcEEEEEE-CCEecCCccccceecCCCCcEEEEE------EeEE---CCCCCCEEEEEEEeCC
Confidence            444544  445677999999 55554211  111222333333221      3333   4566778999996543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.06  E-value=0.0023  Score=36.78  Aligned_cols=69  Identities=12%  Similarity=0.277  Sum_probs=44.4

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEe------eeeeEE--ecCCeEEEEeCCC-ceEEEEEcccCCCCCeEEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILT------IQTHVI--TKNHRIGVTHSET-KAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~------~~~~~~--~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .+.|.|...+  ...-.+.|+++. +..+..      .+.-.+  ...+|+.++.+.. ..+.|+|.+++.+|++.|.|.
T Consensus        17 sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDtAvYYCA   96 (117)
T d1c5db1          17 TLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCT   96 (117)
T ss_dssp             CEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcceEEEEe
Confidence            4666676554  344678899863 222111      111111  2356888887654 568899999999999999996


Q ss_pred             E
Q psy16425         72 V   72 (163)
Q Consensus        72 ~   72 (163)
                      .
T Consensus        97 r   97 (117)
T d1c5db1          97 R   97 (117)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0067  Score=33.49  Aligned_cols=62  Identities=18%  Similarity=0.286  Sum_probs=35.3

Q ss_pred             eEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEe--cCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEML-MAESTVAWLRVDTQTILTIQTHVIT--KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +.|.|...+ .|.+.|.|++ ++..+.........  .++.+.+..      .|.+.   ..+...|+|.+.+.+
T Consensus        19 ~~L~C~~~g~~P~~~V~W~~-n~~~~~~~~~~~~~~~~~g~y~v~S------~L~v~---~~~~~~~tC~V~h~~   83 (95)
T d1dr9a2          19 RRIICSTSGGFPEPHLSWLE-NGEELNAINTTVSQDPETELYAVSS------KLDFN---MTTNHSFMCLIKYGH   83 (95)
T ss_dssp             EEEEEEEEEESSCEEEEEEE-SSCEECCSEEEEEECTTTCCEEEEE------EEEEE---TTSCEEEEEEEEETT
T ss_pred             EEEEEEECcccCCCEEEEec-CCcEecccceeeEecCCCccEEEEE------EEEcc---CCccceEEEEEEecC
Confidence            456777665 6889999999 55554322211111  122333222      45554   445679999996653

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.06  E-value=0.0035  Score=36.66  Aligned_cols=70  Identities=11%  Similarity=0.294  Sum_probs=44.3

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee---e-------e--eEE--ecCCeEEEEeCC-CceEEEEEcccCCCCC
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI---Q-------T--HVI--TKNHRIGVTHSE-TKAWYLHIREVRESDR   65 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~---~-------~--~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~   65 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...   .       .  ..+  ...+|+.+..+. .....|+|.+++.+|+
T Consensus        17 sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~l~~eDt   96 (127)
T d1i3ua_          17 SLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNSLKPEDT   96 (127)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeecccccce
Confidence            4667776654  355788999863 1111111   1       0  011  123588777654 3567899999999999


Q ss_pred             eEEEEEEE
Q psy16425         66 GWYMCQVN   73 (163)
Q Consensus        66 G~Y~C~~~   73 (163)
                      +.|.|...
T Consensus        97 AvYYCAr~  104 (127)
T d1i3ua_          97 AVYYCAAK  104 (127)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            99999863

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.04  E-value=0.0042  Score=35.80  Aligned_cols=69  Identities=17%  Similarity=0.321  Sum_probs=44.9

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee-------eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ-------THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~-------~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++- +..+...+       ...+  ...+|+.++.+. .+.+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eDTAvYYC   96 (120)
T d1ad9b1          17 SVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSEDTAFYFC   96 (120)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCcceEEEE
Confidence            4566666543  455688999863 22221111       1111  235788877765 356889999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (120)
T d1ad9b1          97 AR   98 (120)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.0027  Score=36.72  Aligned_cols=69  Identities=12%  Similarity=0.274  Sum_probs=43.5

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------eee-E--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------QTH-V--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~~~-~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      ... .  ....+|+.+..+. ...+.|+|.+++++|++.|.|
T Consensus        17 Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eDsAvYYC   96 (119)
T d1qnzh_          17 SVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDDSAVYYC   96 (119)
T ss_dssp             EEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGGCEEEEE
T ss_pred             CEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccceeEEEE
Confidence            5677776544  344568999862 2221111      010 1  1124688877654 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 A~   98 (119)
T d1qnzh_          97 AI   98 (119)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.02  E-value=0.0027  Score=37.12  Aligned_cols=69  Identities=17%  Similarity=0.297  Sum_probs=42.3

Q ss_pred             eeEEEeeeecc----CCCEEEEEEcC-CceEEee------eeeEEe--cCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          4 RMLIEIGEMLM----AESTVAWLRVD-TQTILTI------QTHVIT--KNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         4 ~~~~~~~~~~~----~~~~i~W~k~~-~~~~~~~------~~~~~~--~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      .+.|.|...+.    ....+.|+++. +..+...      +.....  ..+|+.+..+. ...+.|+|.+++.+|++.|.
T Consensus        17 sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~eDtAvYy   96 (126)
T d1etzb1          17 TLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTSDTATYH   96 (126)
T ss_dssp             CEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccccccceEE
Confidence            46777765432    22356799752 1111111      111111  24578777664 35678999999999999999


Q ss_pred             EEE
Q psy16425         70 CQV   72 (163)
Q Consensus        70 C~~   72 (163)
                      |..
T Consensus        97 CAr   99 (126)
T d1etzb1          97 CAR   99 (126)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            975

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.02  E-value=0.0029  Score=36.82  Aligned_cols=69  Identities=14%  Similarity=0.289  Sum_probs=44.9

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceE------Eeee-eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTI------LTIQ-THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~------~~~~-~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+      ...+ ...+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        16 sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eDtAvYYC   95 (124)
T d1zvya1          16 SLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTC   95 (124)
T ss_dssp             CEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCcceEEEE
Confidence            4666776654  455688999863 1111      1111 1111  235788877664 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        96 Ar   97 (124)
T d1zvya1          96 GA   97 (124)
T ss_dssp             EE
T ss_pred             ee
Confidence            76

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.02  E-value=0.0025  Score=37.00  Aligned_cols=70  Identities=11%  Similarity=0.205  Sum_probs=45.0

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcC-CceEEeeee-------eEE--ecCCeEEEEeCCC-ceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVD-TQTILTIQT-------HVI--TKNHRIGVTHSET-KAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~~-------~~~--~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y~   69 (163)
                      +.+.|.|...+  ...-.+.|+++. +..+.....       ..+  .-.+|+.++.+.. ..+.|+|.+++.+|++.|.
T Consensus        16 ~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~eDTA~YY   95 (124)
T d2b1hh1          16 ESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPSDTALYY   95 (124)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccccceEEE
Confidence            34667777665  344578999863 222221111       111  1257888777653 5688999999999999999


Q ss_pred             EEE
Q psy16425         70 CQV   72 (163)
Q Consensus        70 C~~   72 (163)
                      |..
T Consensus        96 CAR   98 (124)
T d2b1hh1          96 CAR   98 (124)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            965

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.01  E-value=0.0042  Score=35.70  Aligned_cols=69  Identities=13%  Similarity=0.218  Sum_probs=43.8

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee-------eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ-------THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~-------~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+....       ...+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eDtAvYYC   96 (117)
T d1mfah1          17 SVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSEDSAVYYC   96 (117)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCcceEEEE
Confidence            4666676554  455678899862 22221111       1111  124577777654 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (117)
T d1mfah1          97 TR   98 (117)
T ss_dssp             EE
T ss_pred             ec
Confidence            75

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.99  E-value=0.0023  Score=37.10  Aligned_cols=69  Identities=13%  Similarity=0.312  Sum_probs=44.1

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee-------e--eEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ-------T--HVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~-------~--~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y   68 (163)
                      .+.|.|...+  ...-.+.|+++. +..+....       .  -.+  ...+|+.++.+. ...+.|+|.+++.+|++.|
T Consensus        17 sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvY   96 (122)
T d1q9rb1          17 SLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSATY   96 (122)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeeccCcceEE
Confidence            4666776544  344578999863 22111110       0  111  224688887765 3567899999999999999


Q ss_pred             EEEE
Q psy16425         69 MCQV   72 (163)
Q Consensus        69 ~C~~   72 (163)
                      .|..
T Consensus        97 YCar  100 (122)
T d1q9rb1          97 YCAR  100 (122)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9986

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0023  Score=35.47  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=32.2

Q ss_pred             eEEEeeeec--cCCCEEEEEEcCCceEEee----eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEML--MAESTVAWLRVDTQTILTI----QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~--~~~~~i~W~k~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +.|.|.+.+  .+...|.|++ ++..+...    .......++.+....      .|.   +...+...|+|.+.+.+
T Consensus        18 ~tL~C~~~gFyP~~i~v~W~~-dg~~~~~~~~~~~~~~~~~~~t~~~~s------~l~---v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          18 TTLRCRALNYYPQNITMKWLK-DKQPMDAKEFEPKDVLPNGDGTYQGWI------TLA---VPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEE-TTEECCGGGSCCCEEEECTTSCEEEEE------EEE---ECTTCGGGEEEEEECTT
T ss_pred             EEEEEEEeeEECCCCEEEEEE-CCEECccCcccccceEeCCCceEEEEE------EEE---ECCCCCCEEEEEEEeCC
Confidence            445555544  5667999999 55554211    111112222222111      333   44556678999996653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.98  E-value=0.0042  Score=35.83  Aligned_cols=70  Identities=16%  Similarity=0.366  Sum_probs=45.0

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeeee---------eEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQT---------HVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~~---------~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y   68 (163)
                      .+.|.|...+  ...-.+.|+++. +..+.....         -.+  ...+|+.++.+. .+.+.|+|.+++.+|++.|
T Consensus        17 sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~eDtAvY   96 (120)
T d1dlfh_          17 SMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRAEDTGIY   96 (120)
T ss_dssp             CEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccCCCceEE
Confidence            4667776553  456788999863 222211110         011  124688877654 4568899999999999999


Q ss_pred             EEEEE
Q psy16425         69 MCQVN   73 (163)
Q Consensus        69 ~C~~~   73 (163)
                      .|...
T Consensus        97 YCA~~  101 (120)
T d1dlfh_          97 YCTGI  101 (120)
T ss_dssp             EEEEE
T ss_pred             EeeEe
Confidence            99763

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.97  E-value=0.0051  Score=35.83  Aligned_cols=70  Identities=16%  Similarity=0.283  Sum_probs=45.5

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeE--EecCCeEEEEeCCC-ceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THV--ITKNHRIGVTHSET-KAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~--~~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      + ...  ....+|+.++.+.. ..+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eDTavYYC   96 (127)
T d2fx7h1          17 SVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVYYC   96 (127)
T ss_dssp             CEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcccceEEEE
Confidence            4566676654  455678999863 2222111      1 111  12357888887653 56889999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        97 AR~   99 (127)
T d2fx7h1          97 ARE   99 (127)
T ss_dssp             EEE
T ss_pred             eec
Confidence            863

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.96  E-value=0.005  Score=35.80  Aligned_cols=69  Identities=12%  Similarity=0.233  Sum_probs=44.9

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceE------Eeee-eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTI------LTIQ-THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~------~~~~-~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++- +..+      .... ...  ....+|+.+..+. ...+.|+|.+++.+|++.|.|
T Consensus        16 sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eDTAvYYC   95 (126)
T d1lmka1          16 SLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSEDSAVYYC   95 (126)
T ss_dssp             CEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCcceEEEE
Confidence            4666776655  455678899863 2222      1111 111  1235788887655 467899999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        96 Ar   97 (126)
T d1lmka1          96 AR   97 (126)
T ss_dssp             EE
T ss_pred             ee
Confidence            75

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.95  E-value=0.003  Score=36.35  Aligned_cols=69  Identities=12%  Similarity=0.229  Sum_probs=43.7

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee-------eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ-------THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~-------~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...+       .-.+  ...+|+.++.+. ...+.|.|.+++.+|++.|.|
T Consensus        17 sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYC   96 (118)
T d2jelh1          17 SVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYC   96 (118)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCcceeeeE
Confidence            4666776554  344578999863 22221111       1111  124688777654 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (118)
T d2jelh1          97 AR   98 (118)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.95  E-value=0.0041  Score=36.26  Aligned_cols=69  Identities=13%  Similarity=0.324  Sum_probs=43.4

Q ss_pred             eeEEEeeee--ccCCCEEEEEEcC-CceEE------ee-eeeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEM--LMAESTVAWLRVD-TQTIL------TI-QTHVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~--~~~~~~i~W~k~~-~~~~~------~~-~~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...  ....-.+.|+++. +..+.      .. +...+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        16 sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eDTAvYYC   95 (126)
T d1rjca1          16 SLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPEDTAMYYC   95 (126)
T ss_dssp             CEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcccCceeEE
Confidence            455666554  3556678999863 22211      11 11111  124688877654 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        96 Ar   97 (126)
T d1rjca1          96 AA   97 (126)
T ss_dssp             EE
T ss_pred             Ee
Confidence            76

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.94  E-value=0.0038  Score=36.26  Aligned_cols=70  Identities=17%  Similarity=0.331  Sum_probs=44.9

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      + ...  ....+|+.+..+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eDTAvYYC   96 (125)
T d1op3h1          17 SLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYC   96 (125)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCccceeEeE
Confidence            4566665543  455678999863 2222111      1 111  1225688887755 467889999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        97 Ar~   99 (125)
T d1op3h1          97 ARK   99 (125)
T ss_dssp             EEE
T ss_pred             eec
Confidence            763

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0017  Score=36.01  Aligned_cols=56  Identities=11%  Similarity=0.098  Sum_probs=39.4

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce---EEeceEEEEcchhhhHhh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ---EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~---~~~~~l~i~~v~~~~~~~  157 (163)
                      ..+..|++|+|.|.... +...+.|++++..........   .....|.|.+|+.+|++.
T Consensus        13 ~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~   71 (95)
T d1olla1          13 FMVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQ   71 (95)
T ss_dssp             SEEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEE
T ss_pred             CcccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCce
Confidence            35778999999998743 456789999987543332221   234579999999998763

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.93  E-value=0.0097  Score=34.06  Aligned_cols=70  Identities=13%  Similarity=0.287  Sum_probs=44.1

Q ss_pred             eeEEEeeee--ccCCCEEEEEEcC-CceEEee------eeeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEE
Q psy16425          4 RMLIEIGEM--LMAESTVAWLRVD-TQTILTI------QTHVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         4 ~~~~~~~~~--~~~~~~i~W~k~~-~~~~~~~------~~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .+.|.|...  ....-.+.|+++. +..+...      +...+  ...+|+.+..+. ...+.|+|.+++.+|++.|.|.
T Consensus        17 sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDTAvYYCA   96 (116)
T d1a2yb_          17 SLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCA   96 (116)
T ss_dssp             CEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             CeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccceEEEEE
Confidence            456666554  3455678899863 2221111      11111  124577777654 3567899999999999999998


Q ss_pred             EE
Q psy16425         72 VN   73 (163)
Q Consensus        72 ~~   73 (163)
                      ..
T Consensus        97 r~   98 (116)
T d1a2yb_          97 RE   98 (116)
T ss_dssp             EE
T ss_pred             Ee
Confidence            63

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.93  E-value=0.0034  Score=36.55  Aligned_cols=69  Identities=13%  Similarity=0.310  Sum_probs=45.0

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      + ...  ....+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eDtavYYC   96 (126)
T d1dfbh1          17 SLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYC   96 (126)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCcceEEEE
Confidence            4667776654  344578999863 2222111      1 111  1235788888765 456889999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (126)
T d1dfbh1          97 VK   98 (126)
T ss_dssp             EE
T ss_pred             Ee
Confidence            75

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.92  E-value=0.0049  Score=35.88  Aligned_cols=70  Identities=13%  Similarity=0.195  Sum_probs=44.8

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee-------eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ-------THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~-------~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+....       ...  ....+|+.+..+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eDtAvYYC   96 (125)
T d1rihh1          17 SMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSEDSAVYYC   96 (125)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcccceEEEE
Confidence            4667776654  344578999863 22221111       111  1234688877665 456789999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        97 AR~   99 (125)
T d1rihh1          97 ARE   99 (125)
T ss_dssp             EEE
T ss_pred             eee
Confidence            763

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.92  E-value=0.003  Score=36.63  Aligned_cols=70  Identities=13%  Similarity=0.287  Sum_probs=44.7

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      + ...+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eDTAvYYC   96 (122)
T d1bz7b1          17 SRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYC   96 (122)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccCceEEEe
Confidence            4566666654  455678999863 2222111      1 1111  235788877654 356789999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        97 Ar~   99 (122)
T d1bz7b1          97 TRG   99 (122)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            763

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.92  E-value=0.004  Score=36.35  Aligned_cols=70  Identities=20%  Similarity=0.306  Sum_probs=45.0

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEe------eeee-E--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILT------IQTH-V--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~------~~~~-~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+..      .+.. .  ....+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eDTA~YYC   96 (128)
T d2nxyd1          17 SVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFC   96 (128)
T ss_dssp             CEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccCceEEEE
Confidence            4666666654  344567899863 111111      1111 1  1235788888765 356889999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        97 Ar~   99 (128)
T d2nxyd1          97 AGV   99 (128)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            874

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.92  E-value=0.0038  Score=36.41  Aligned_cols=70  Identities=13%  Similarity=0.344  Sum_probs=45.0

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  .....+.|+++. +..+...      + ...  ....+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eDTA~YYC   96 (127)
T d2fb4h1          17 SLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPEDTGVYFC   96 (127)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecceeEEEE
Confidence            4566666544  455678999863 2222111      1 111  1224688887765 356889999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        97 Ar~   99 (127)
T d2fb4h1          97 ARD   99 (127)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            763

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.91  E-value=0.0044  Score=33.99  Aligned_cols=61  Identities=15%  Similarity=0.221  Sum_probs=31.8

Q ss_pred             eEEEee--eeccCCCEEEEEEcCCceEEeee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIG--EMLMAESTVAWLRVDTQTILTIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~--~~~~~~~~i~W~k~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|.  .+-.....|.|++ ++..+.... ......++.+....      .|.+.   ..+...|+|.+...
T Consensus        18 ~~L~C~~~gF~P~~i~v~W~~-ng~~~~~~~~~~~~~~dgty~~~S------~l~v~---~~~~~~ytC~V~H~   81 (91)
T d3frua1          18 SVLTCAAFSFYPPELKFRFLR-NGLASGSGNCSTGPNGDGSFHAWS------LLEVK---RGDEHHYQCQVEHE   81 (91)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEE-TTEECCCCEEEEEECSSSCEEEEE------EEEEE---TTCGGGEEEEEECT
T ss_pred             EEEEEEEEeEECCCCEEEEEE-CCEeCCccCccceecCCCCEeEEE------EEEEC---CCCCCEEEEEEEeC
Confidence            444444  4445668999999 554432211 11112233333222      44443   45567899999654

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.91  E-value=0.003  Score=36.39  Aligned_cols=70  Identities=14%  Similarity=0.278  Sum_probs=44.6

Q ss_pred             ceeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425          3 ARMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM   69 (163)
Q Consensus         3 ~~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~   69 (163)
                      ..+.|.|...+  ...-.+.|+++. +..+...      . ...+  ...+|+.+..+. ...+.|+|.+++.+|++.|.
T Consensus        16 ~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvYY   95 (119)
T d1eapb1          16 ASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYF   95 (119)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCcceEEE
Confidence            35667777654  345678999863 2222111      1 1111  225688877654 35678999999999999999


Q ss_pred             EEE
Q psy16425         70 CQV   72 (163)
Q Consensus        70 C~~   72 (163)
                      |..
T Consensus        96 CAr   98 (119)
T d1eapb1          96 CKR   98 (119)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            975

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0014  Score=37.33  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=26.9

Q ss_pred             EeCCCcEEEEeEecc-CCCC--eEEEEECCeEEEec
Q psy16425        103 IREGSNVTLKCAASG-SPKP--NITWRREGGELIAQ  135 (163)
Q Consensus       103 ~~~g~~~~l~C~~~~-~p~p--~v~W~~~~~~~~~~  135 (163)
                      +.+|+.+.|.|.+.+ +|.+  .++|++++..+...
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~   48 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQ   48 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEE
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeecc
Confidence            678999999999974 7754  68999999887543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.88  E-value=0.0062  Score=35.59  Aligned_cols=70  Identities=16%  Similarity=0.274  Sum_probs=45.5

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee-------eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ-------THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~-------~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+....       ...+  ...+|+.+..+. ...+.|+|.+++.+|++.|.|
T Consensus        16 sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDtAvYyC   95 (130)
T d1rhhb1          16 SVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDDTAVYYC   95 (130)
T ss_dssp             CEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCCcEEEEE
Confidence            4667777654  455678999863 22221111       1111  225688887765 356789999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        96 Ar~   98 (130)
T d1rhhb1          96 ARD   98 (130)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            763

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.87  E-value=0.0046  Score=35.84  Aligned_cols=69  Identities=13%  Similarity=0.257  Sum_probs=44.5

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++- +..+...      . ...+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYC   96 (124)
T d1yedb1          17 SVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSEDSAVYFC   96 (124)
T ss_dssp             EEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCCcceEEEe
Confidence            4666666654  445678999863 1111111      1 1111  225688887765 466889999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 AR   98 (124)
T d1yedb1          97 TR   98 (124)
T ss_dssp             EE
T ss_pred             cc
Confidence            76

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0028  Score=35.33  Aligned_cols=61  Identities=11%  Similarity=0.173  Sum_probs=34.0

Q ss_pred             cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEe--CCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTH--SETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      ..+|.|.|... .....+.++|.+.....          .......  .......+.|.+|+..|+|.|+|...
T Consensus        18 G~~VTL~C~~~-~~~~~f~L~k~g~~~~~----------~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   80 (98)
T d1ugna2          18 GGNVTLQCDSQ-VAFDGFILCKEGEDEHP----------QCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY   80 (98)
T ss_dssp             TCCEEEEEECS-SCCSEEEEEEC----------------CEEEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred             CCcEEEEeCCC-CCCCEEEEEECCCcCCc----------EeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence            35678888754 45556667773322110          0000000  01123479999999999999999874

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.86  E-value=0.0061  Score=33.90  Aligned_cols=62  Identities=16%  Similarity=0.199  Sum_probs=32.6

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ++|.+..+-.+...|.|++ ++..+...   .......++.+....      .|.+   ..++...|+|.+...+
T Consensus        22 L~C~~~gFyP~~i~v~W~~-ng~~~~~~~~~~~~~~~~dgty~~~s------~L~v---~~~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          22 LACYVWGFYPAEVTITWRK-NGKLVMHSSAHKTAQPNGDWTYQTLS------HLAL---TPSYGDTYTCVVEHIG   86 (98)
T ss_dssp             EEEEEEEEBSSCCEEEEEE-TTEECCCCCSBCCCEECSSSCEEEEE------EEEE---CCCTTCCEEEEEECTT
T ss_pred             EEEEEEEEECCCCEEEEEE-CCEeccCCeEeCceEECCCCCEEEEE------EeEc---CCCCCCEEEEEEEeCC
Confidence            3344444556789999999 55544211   111122233333221      3444   3455668999996553

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0084  Score=33.50  Aligned_cols=66  Identities=17%  Similarity=0.256  Sum_probs=36.1

Q ss_pred             eeEEEeee--eccCCCEEEEEEcCCceEEe-ee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGE--MLMAESTVAWLRVDTQTILT-IQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~--~~~~~~~i~W~k~~~~~~~~-~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .+.|.|..  .......|.|++ ++..+.. ..  ......++.+....      .|.|..-.......|+|.+.+.+
T Consensus        22 ~~tl~C~v~~f~P~~i~v~W~~-~g~~~~~~~~t~~~~~~~dgtys~~S------~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          22 KATLVCTITDFYPGVVTVDWKV-DGTPVTAGMETTQPSKQSNNKYMASS------YLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEEE-TTEEECTTEEECCCEECTTSCEEEEE------EEEEEHHHHTTCCEEEEEEEETT
T ss_pred             eEEEEEEEeeeeCCCCEEEEEE-CCEECCCCeEecccEEcCCCCEEEEE------EEEECHHHhCCCCEEEEEEEECC
Confidence            34455544  434457899999 5554421 11  11122344444433      56676555455678999996543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.86  E-value=0.006  Score=35.05  Aligned_cols=69  Identities=16%  Similarity=0.288  Sum_probs=44.0

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++- +..+...      . ...+  ...+|+.+..+. ...+.|.|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eDtAvYYC   96 (118)
T d1ct8b1          17 SVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYC   96 (118)
T ss_dssp             CEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCcceEEEE
Confidence            4666676544  455688999863 2222111      1 1111  124577777654 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (118)
T d1ct8b1          97 AR   98 (118)
T ss_dssp             EE
T ss_pred             ee
Confidence            76

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.83  E-value=0.0034  Score=36.35  Aligned_cols=70  Identities=14%  Similarity=0.347  Sum_probs=44.1

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------ee-eEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------QT-HVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~~-~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      +. ..+  ...+|+.+..+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eDtAvYYC   96 (123)
T d1mqkh_          17 SLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYC   96 (123)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCcccceeE
Confidence            4666676544  345678999863 2222111      11 111  124678877654 356789999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        97 Ar~   99 (123)
T d1mqkh_          97 VRH   99 (123)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            764

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.80  E-value=0.0069  Score=34.78  Aligned_cols=70  Identities=11%  Similarity=0.248  Sum_probs=44.6

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee------eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ------THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~------~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .+.|.|...+  ...-.+.|+++. +..+....      .-.+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|.
T Consensus        17 Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDtA~YyCA   96 (118)
T d1lo4h1          17 SLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDTAIYYCA   96 (118)
T ss_dssp             CEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcceEEEec
Confidence            4566666554  455688999863 22221111      1111  124577777655 3567899999999999999997


Q ss_pred             EE
Q psy16425         72 VN   73 (163)
Q Consensus        72 ~~   73 (163)
                      ..
T Consensus        97 r~   98 (118)
T d1lo4h1          97 RG   98 (118)
T ss_dssp             EE
T ss_pred             cc
Confidence            63

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.79  E-value=0.013  Score=32.68  Aligned_cols=61  Identities=21%  Similarity=0.353  Sum_probs=31.5

Q ss_pred             EEEeeeeccCCCEEEEEEcCCceEEee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          6 LIEIGEMLMAESTVAWLRVDTQTILTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +|.+...-.....|.|++ ++..+...   .......++.+....      .|.+.   ..+...|+|.+...+
T Consensus        25 ~C~v~gF~P~~i~v~W~~-ng~~~~~~~~~~~~~~~~dgty~~~S------~L~v~---~~~~~~ytC~V~H~s   88 (101)
T d1fnga1          25 ICFIDKFSPPVVNVTWLR-NGRPVTEGVSETVFLPRDDHLFRKFH------YLTFL---PSTDDFYDCEVDHWG   88 (101)
T ss_dssp             EEEEEEEBSSCCEEEEEE-TTEEECSSEEECCCEECSSSCEEEEE------EEEEC---CCTTCCEEEEEECTT
T ss_pred             EEEEEeEECCCCEEEEEE-CCeecCCCcEeCeEEECCCCcEEEEE------EeEEc---CCCCCEEEEEEEECC
Confidence            333334444667999999 66554211   111122233333222      44544   344567999996553

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.78  E-value=0.0068  Score=33.78  Aligned_cols=62  Identities=16%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ++|.+..+-.+...|.|.+ ++..+..   ........++.+....      .|.+.   .++...|+|.+...+
T Consensus        24 L~C~~~gFyP~~i~v~W~~-ng~~~~~~~~~~~~~~~~dgtf~~~s------~l~v~---~~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          24 LICLVDNIFPPVVNITWLS-NGQSVTEGVSETSFLSKSDHSFFKIS------YLTFL---PSADEIYDCKVEHWG   88 (99)
T ss_dssp             EEEEEEEECSSCCEEEEEE-TTEEECTTEEECCCEECTTSCEEEEE------EEEEC---CCTTCCEEEEEECTT
T ss_pred             EEEEEEEEECCCCEEEEEE-CCEeccCCcEecceEECCCCCEEEEE------EEEEc---CCCCCEEEEEEEeCC
Confidence            3444445555778999999 5655421   1111122233333221      34444   455568999996543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.77  E-value=0.00044  Score=38.76  Aligned_cols=57  Identities=9%  Similarity=0.017  Sum_probs=38.1

Q ss_pred             EEEeCCCcEEEEeEec-c-CCCCeEEEEECCeEEEecCCce-----------EEeceEEEEcchhhhHhh
Q psy16425        101 MVIREGSNVTLKCAAS-G-SPKPNITWRREGGELIAQGNGQ-----------EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~-~-~p~p~v~W~~~~~~~~~~~~~~-----------~~~~~l~i~~v~~~~~~~  157 (163)
                      +.-..|+++.|.|... . .+...|.|++++..+.......           ..++.|+|.+++.+|++.
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~   74 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGT   74 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEE
Confidence            3455799999999642 2 2334799999887653221111           134679999999999863

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00092  Score=37.40  Aligned_cols=56  Identities=16%  Similarity=0.053  Sum_probs=37.2

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCC-----ceEEeceEEEEcchhhhHhh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN-----GQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~-----~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ..+..|++|+|.|.+. .+...+.|++++........     .......|.|.+|+.+|++.
T Consensus        16 ~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~   76 (99)
T d1ucta1          16 PVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGR   76 (99)
T ss_dssp             SEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEE
T ss_pred             CceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCce
Confidence            3577899999999875 34567899987642211111     11233569999999999763

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.75  E-value=0.0048  Score=36.16  Aligned_cols=70  Identities=13%  Similarity=0.319  Sum_probs=44.8

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee---------eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ---------THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~---------~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y   68 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...+         ...  ..-.+|+.++.+. ...+.|+|.+++++|++.|
T Consensus        17 sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~eDTAvY   96 (131)
T d3c2ah1          17 SLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKTEDTAVY   96 (131)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccccCCceEE
Confidence            4566666543  444578999863 22221111         011  1235688887765 3568899999999999999


Q ss_pred             EEEEE
Q psy16425         69 MCQVN   73 (163)
Q Consensus        69 ~C~~~   73 (163)
                      .|...
T Consensus        97 YCAR~  101 (131)
T d3c2ah1          97 SCTTD  101 (131)
T ss_dssp             EEEEE
T ss_pred             EEecc
Confidence            99863

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.74  E-value=0.0052  Score=35.52  Aligned_cols=69  Identities=13%  Similarity=0.320  Sum_probs=44.6

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      . .-.  ....+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eDtAvYYC   96 (121)
T d1ol0a_          17 SLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC   96 (121)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccccceEEEE
Confidence            4667776654  345578999863 2221111      1 111  1235688888765 456889999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (121)
T d1ol0a_          97 AR   98 (121)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.73  E-value=0.015  Score=32.57  Aligned_cols=63  Identities=13%  Similarity=0.229  Sum_probs=34.2

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEe--eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILT--IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM   77 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   77 (163)
                      ++|.+...-.+...|.|++ ++..+..  ........++.+....      .|.|.   .+|...|+|.+...+.
T Consensus        23 L~C~v~gF~P~~i~V~W~~-ng~~~~~~~~~~~~~~~dgty~~~S------~L~v~---~~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          23 LVCFVSNLFPPMLTVNWHD-HSVPVEGFGPTFVSAVDGLSFQAFS------YLNFT---PEPSDIFSCIVTHEPD   87 (103)
T ss_dssp             EEEEEEEEBSSCEEEEEEE-TTEECSSCCCEEEEEETTTEEEEEE------EEEEC---CCTTCCEEEEEEETTT
T ss_pred             EEEEEeeEECCCCEEEEEE-CCeecCCcEeceEEeCCCCcEEEEE------EEEEe---cCCCCEEEEEEEeCCC
Confidence            4555556656678999999 5544321  1111222333333322      34443   4555679999976643

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.73  E-value=0.0058  Score=35.73  Aligned_cols=69  Identities=16%  Similarity=0.295  Sum_probs=44.3

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------eee-E--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------QTH-V--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~~~-~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...      +.. .  ....+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eDtA~YYC   96 (130)
T d1rzga1          17 SVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSEDTAVFYC   96 (130)
T ss_dssp             CEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCccEEEEE
Confidence            4667776654  455678999863 2211111      110 1  1224678777665 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (130)
T d1rzga1          97 AS   98 (130)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.73  E-value=0.008  Score=35.24  Aligned_cols=70  Identities=21%  Similarity=0.389  Sum_probs=45.3

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEee------e-eeE--EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTI------Q-THV--ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~------~-~~~--~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++- +..+...      . .-.  ....+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        16 sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eDtA~YYC   95 (133)
T d1rzfh1          16 SVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDDTAVYYC   95 (133)
T ss_dssp             CEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCCCEEEEe
Confidence            4666776654  444578899863 2222111      1 111  1235788888765 467889999999999999999


Q ss_pred             EEE
Q psy16425         71 QVN   73 (163)
Q Consensus        71 ~~~   73 (163)
                      ...
T Consensus        96 Ar~   98 (133)
T d1rzfh1          96 ASN   98 (133)
T ss_dssp             EEE
T ss_pred             eec
Confidence            763

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.014  Score=32.03  Aligned_cols=63  Identities=13%  Similarity=0.107  Sum_probs=32.5

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .+.|.|...+  .+...|.|++ ++..+...  .......++.+....      .|.+   ...+...|+|.+...+
T Consensus        17 ~~tL~C~~~gFyP~~i~v~W~~-ng~~~~~~~~~~~~~~~~~t~~~~s------~l~~---~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          17 KKKLKCLAYDFYPGKIDVHWTR-AGEVQEPELRGDVLHNGNGTYQSWV------VVAV---PPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             CEEEEEEEEEEBSSCEEEEEEE-TTEECCCSEEEEEEETTTTEEEEEE------EEEE---CTTCCSCEEEEEEETT
T ss_pred             CEEEEEEEEeEECCCCEEEEEE-CCEECCCcEEeeeecCCCCeEEEEE------EeEe---CCCCCCEEEEEEEECC
Confidence            4455555544  3557999999 55443211  111112223333221      3333   4556678999996653

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.69  E-value=0.006  Score=35.54  Aligned_cols=69  Identities=13%  Similarity=0.276  Sum_probs=43.6

Q ss_pred             eeEEEeeeeccCC---CEEEEEEcC-CceEEeee------eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEMLMAE---STVAWLRVD-TQTILTIQ------THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~~~~---~~i~W~k~~-~~~~~~~~------~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+..-   -.+.|+++. +..+....      ...+  ...+|+.+..+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eDtAvYyC   96 (127)
T d3cx5j1          17 SLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTEDTATYYC   96 (127)
T ss_dssp             CEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccccceEEEe
Confidence            4677777665432   468999862 22222111      1111  124566666544 456889999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (127)
T d3cx5j1          97 AR   98 (127)
T ss_dssp             EE
T ss_pred             ee
Confidence            75

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0011  Score=36.90  Aligned_cols=60  Identities=13%  Similarity=0.070  Sum_probs=35.3

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .+|.|.|... .+...+.++|. +......      ... ..   .......+.|.+|+..|+|.|.|....
T Consensus        19 ~~VTL~C~~~-~~~~~f~L~ke-g~~~~~~------~~~-~~---~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          19 SPVTLRCQGG-QETQEYRLYRE-KKTAPWI------TRI-PQ---ELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCEEEEEECC-TTCCCEEEEES-SSCCHHH------HTS-CH---HHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEEeCC-CCCCEEEEEEC-CCCcccE------EEc-cC---CCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            4678888753 55556667773 3221000      000 00   000123799999999999999998743

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.011  Score=32.93  Aligned_cols=65  Identities=12%  Similarity=0.178  Sum_probs=34.3

Q ss_pred             eEEEeee--eccCCCEEEEEEcCCceEEeee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGE--MLMAESTVAWLRVDTQTILTIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~--~~~~~~~i~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +.|.|..  .......|.|++ ++.......  ......++.+....      .|.|..-.......|+|.+.+.+
T Consensus        22 ~tL~Clv~gf~P~~i~v~W~~-~g~~~~~~~~~~~~~~~dgtys~~S------~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          22 VSLTCLVKGFYPSDIAVEWES-NGQPENNYKTTPPVLDSDGSFFLYS------KLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEE-TTEEECCEEECCCEECTTSCEEEEE------EEEEEHHHHHTTCCEEEEEECTT
T ss_pred             eEEEEEEEEeECCCCEEEEEE-CCEECCCeEEcceEECCCCCEEEEE------EEEECHHHcCCCCEEEEEEEeCC
Confidence            4444544  444457999999 555432211  11122334343332      56665544444457999996654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00097  Score=36.95  Aligned_cols=56  Identities=14%  Similarity=0.089  Sum_probs=38.2

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~  157 (163)
                      ..+..|.+|+|.|.... +...+.++++|...............|.|.+|+.+|++.
T Consensus        13 ~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~   68 (93)
T d1olla2          13 PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGT   68 (93)
T ss_dssp             SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEE
T ss_pred             CcccCCCcEEEEECCCC-CCCEEEEEECCCccceeecCCCceeEEEecccChhcCce
Confidence            45778999999999743 456788998875432211111234579999999988763

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00042  Score=38.72  Aligned_cols=56  Identities=20%  Similarity=0.299  Sum_probs=37.1

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~  156 (163)
                      ..+..|.+|+|.|.....+.-.+.|++++...............|.|.+|+.+|++
T Consensus        14 ~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G   69 (96)
T d1ucta2          14 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSG   69 (96)
T ss_dssp             SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCE
T ss_pred             CccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCc
Confidence            36788999999998644444578999988532111101112356889999988865

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.57  E-value=0.0045  Score=35.73  Aligned_cols=70  Identities=13%  Similarity=0.285  Sum_probs=44.1

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee-----------eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ-----------THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWY   68 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~-----------~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y   68 (163)
                      .+.|.|...+  ...-.+.|+++. +..+...+           .......+|+.++.+. ...+.|+|.+++.+|++.|
T Consensus        17 sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~~eDTAvY   96 (121)
T d1nfdf1          17 SLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRVDDTAIY   96 (121)
T ss_dssp             EEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCCGGGCEEC
T ss_pred             CEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccCCCcceEE
Confidence            4666676654  344567899863 22221111           0011235677777665 3567899999999999999


Q ss_pred             EEEEE
Q psy16425         69 MCQVN   73 (163)
Q Consensus        69 ~C~~~   73 (163)
                      .|...
T Consensus        97 YCAr~  101 (121)
T d1nfdf1          97 YCTRA  101 (121)
T ss_dssp             EEEEE
T ss_pred             EEecc
Confidence            99763

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.57  E-value=0.0059  Score=35.52  Aligned_cols=69  Identities=16%  Similarity=0.311  Sum_probs=44.2

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEe------ee-eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILT------IQ-THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~------~~-~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+..      .. ...+  ...+|+.++.+. ...+.|.|.+++.+|++.|.|
T Consensus        17 sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~eDtAvYYC   96 (127)
T d1n0xh1          17 SVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYC   96 (127)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCCCceEEEE
Confidence            4666776654  445678999863 221111      11 1111  224688877764 356789999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 AR   98 (127)
T d1n0xh1          97 AR   98 (127)
T ss_dssp             EE
T ss_pred             Ee
Confidence            75

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.011  Score=32.96  Aligned_cols=65  Identities=12%  Similarity=0.130  Sum_probs=34.2

Q ss_pred             eEEEeeeec--cCCCEEEEEEcCCceEEeee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEML--MAESTVAWLRVDTQTILTIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +.|.|...+  .....|.|++ ++..+....  ......++.+....      .|.|..-.......|+|.+...+
T Consensus        21 ~tL~C~v~~f~P~~i~v~W~~-~g~~~~~~~~~~~~~~~dgtys~~S------~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          21 VSLTCMITDFFPEDITVEWQW-NGQPAENYKNTQPIMDTDGSYFVYS------KLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEE-TTEECCSEEECCCEECTTSCEEEEE------EEEEEHHHHHTTCCEEEEEECTT
T ss_pred             EEEEEEEEEeECCCcEEEEEE-CCEEccCcEEeeeecCCCCcEEEEE------EEEECHHHhCCCCEEEEEEEECC
Confidence            445555444  4568899999 554432111  11222333343332      45665444344567999996654

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.52  E-value=0.021  Score=31.51  Aligned_cols=61  Identities=13%  Similarity=0.304  Sum_probs=32.4

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ++|.+...-.....|.|.+ ++..+..   ........++.+....      .|.   +...+...|+|.+...
T Consensus        21 L~C~~~gF~P~~i~v~W~~-ng~~~~~~~~~~~~~~~~dgty~~~s------~l~---v~~~~~~~ytC~V~H~   84 (97)
T d1uvqb1          21 LVCSVTDFYPGQIKVRWFR-NDQEETAGVVSTPLIRNGDWTFQILV------MLE---MTPQRGDVYTCHVEHP   84 (97)
T ss_dssp             EEEEEEEEBSSCCEEEEEE-TTEEECTTEEECCCEECSSSCEEEEE------EEE---CCSCTTCCEEEEEECT
T ss_pred             EEEEEeeeECCCeEEEEEE-CCEEcCCCcEeceeecCCCceEEEEE------Eec---cCCCCCCEEEEEEEeC
Confidence            4444555555678999999 5544321   1111122233333221      233   3456677899999654

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.51  E-value=0.011  Score=32.99  Aligned_cols=65  Identities=9%  Similarity=0.105  Sum_probs=34.6

Q ss_pred             eEEEee--eeccCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIG--EMLMAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~--~~~~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +.|.|.  ........|.|++ ++......  .......++.+....      .|.|..-.......|+|.+...+
T Consensus        22 ~~L~C~v~~f~P~~i~v~W~~-~g~~~~~~~~~~~~~~~dgt~s~~S------~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          22 VSITCMVKGFYPPDIYTEWKM-NGQPQENYKNTPPTMDTDGSYFLYS------KLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEE-TTEECSSEEECCCEECTTSCEEEEE------EEEEEHHHHHTTCCEEEEEECTT
T ss_pred             EEEEEEEEEEECCCCEEEEEE-CCeeccCcEEcccEeCCCCCEEEEE------EEEECHHHhCCCCEEEEEEEeCC
Confidence            444444  4444557899999 45433211  111223334443332      46666555455567999996654

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.49  E-value=0.016  Score=31.25  Aligned_cols=61  Identities=11%  Similarity=0.159  Sum_probs=33.0

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .+.|.+...-.+...|.|.+ ++..+..........++.+...         .+..+...  ..|+|.+...+
T Consensus        17 tl~Cl~~gF~P~~i~v~W~~-~g~~~~~~~~~~~~~~gtys~~---------s~~~~~~~--~~yTC~V~H~~   77 (86)
T d1hxma2          17 NVACLVKEFYPKDIRINLVS-SKKITEFDPAIVISPSGKYNAV---------KLGKYEDS--NSVTCSVQHDN   77 (86)
T ss_dssp             EEEEEEESCBSSCCEEEEEC-SSEEEECCCEEEECTTSSEEEE---------EEEEETTT--TTCEEEEEETT
T ss_pred             EEEEEEeeEECCCCEEEEEE-CCEEccCcEEeeeccCCcEEEE---------EEEecCCC--CEEEEEEEECC
Confidence            34555556666778889997 5655433222223334444322         22233434  46999996543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0089  Score=33.60  Aligned_cols=64  Identities=13%  Similarity=0.198  Sum_probs=35.2

Q ss_pred             eEEEeee--eccCCCEEEEEEcCCceEEe----eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGE--MLMAESTVAWLRVDTQTILT----IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~--~~~~~~~i~W~k~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|..  .......|.|++ ++..+..    ........++.+....      .|.|..-.......|+|.+.+.
T Consensus        22 vtL~Clv~~f~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~~~gtys~~S------~L~v~~~~W~~g~~ytC~V~H~   91 (105)
T d1fp5a2          22 RTLACLIQNFMPEDISVQWLH-NEVQLPDARHSTTQPRKTKGSGFFVFS------RLEVTRAEWEQKDEFICRAVHE   91 (105)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEE-TTEECCGGGEEECCCEECSSSCEEEEE------EEEECHHHHTTGGGEEEEEECT
T ss_pred             EEEEEEEEeeeCCCcEEEEEE-CCEECCCceeEeeeeEecCCCCEEEEE------EEEECHHHcCCCCEEEEEEEEC
Confidence            4444544  444568999998 5544321    1111222334444333      5677665555556799999654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.003  Score=36.71  Aligned_cols=36  Identities=28%  Similarity=0.537  Sum_probs=28.1

Q ss_pred             CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEE
Q psy16425         90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR  127 (163)
Q Consensus        90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~  127 (163)
                      |.+...|  ....+.+|++++|.|.+.+...+.+.|++
T Consensus         2 ~~~~~~P--~~~~~~~G~~vtL~C~~~~~~~~~v~Wyr   37 (122)
T d1nezg_           2 PELRIFP--KKMDAELGQKVDLVCEVLGSVSQGCSWLF   37 (122)
T ss_dssp             CEEEEES--SCEEECTTCCEEEEEEEESCCSSCEEEEE
T ss_pred             CceEEcC--CEEEECCCCCEEEEEEEcCccCCCEEEEE
Confidence            4445544  35678899999999998877777899987

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.39  E-value=0.0031  Score=35.37  Aligned_cols=30  Identities=30%  Similarity=0.512  Sum_probs=23.9

Q ss_pred             eCCCcEEEEeEeccC-CC-CeEEEEECCeEEE
Q psy16425        104 REGSNVTLKCAASGS-PK-PNITWRREGGELI  133 (163)
Q Consensus       104 ~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~  133 (163)
                      ..|+..+|.|.+.|+ |. ..+.|.+||..+.
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~   48 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVT   48 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecC
Confidence            457788999999984 64 4799999998764

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.37  E-value=0.0056  Score=35.08  Aligned_cols=69  Identities=14%  Similarity=0.285  Sum_probs=43.7

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee-------eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ-------THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMC   70 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~-------~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C   70 (163)
                      .+.|.|...+  ...-.+.|+++. +..+....       .-.+  ...+|+.++.+. ...+.|+|.+++.+|++.|.|
T Consensus        17 sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eDTAvYYC   96 (117)
T d1b2wh1          17 SLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPEDTAVYYC   96 (117)
T ss_dssp             CEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGGCEEEEC
T ss_pred             CEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCcceEEEE
Confidence            4566666543  355678899863 22111111       0011  124688888765 356889999999999999999


Q ss_pred             EE
Q psy16425         71 QV   72 (163)
Q Consensus        71 ~~   72 (163)
                      ..
T Consensus        97 Ar   98 (117)
T d1b2wh1          97 AR   98 (117)
T ss_dssp             CE
T ss_pred             cc
Confidence            65

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0078  Score=33.62  Aligned_cols=64  Identities=22%  Similarity=0.366  Sum_probs=33.7

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ++|.+.........|.|++ ++..+...   .......++.+....      .|.|..........|+|.+.+.
T Consensus        25 L~C~v~~f~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgtys~~S------~L~v~~~~w~~~~~ytC~V~H~   91 (102)
T d1rzfl2          25 LVCLISDFYPGAVTVAWKA-DSSPVKAGVETTTPSKQSNNKYAASS------YLSLTPEQWKSHRSYSCQVTHE   91 (102)
T ss_dssp             EEEEEEEEBSSCCEEEEEE-TTEECCSSEEECCCEECTTSCEEEEE------EEEECHHHHHHSSCEEEEEEET
T ss_pred             EEEEEEeeCCCCeEEEEEE-CCEECCCCEEeCCcEECCCCEEEEEE------EEEECHHHhCCCCEEEEEEEEC
Confidence            4444444545567899999 55543211   111122334444332      5666554433345799999664

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.36  E-value=0.013  Score=32.63  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=34.8

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcCCceEEe--eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVDTQTILT--IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .+.|.|...+  .....|.|.+ ++.....  ........++.+....      .|.|..-.-.....|+|.+.+.+
T Consensus        21 ~~tl~C~v~gf~P~~i~v~W~~-~g~~~~~~~~~~~~~~~dgtys~~S------~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          21 QVTLTCMVTDFMPEDIYVEWTN-NGKTELNYKNTEPVLDSDGSYFMYS------KLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEEE-TTEECSSEEECCCEECTTSCEEEEE------EEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cEEEEEEEEEeECCCcEEEEEE-CCEEccCcEEccceeCCCCcEEEEE------EEEECHHHcCCCCEEEEEEEeCC
Confidence            3445555443  4568999999 4443211  1111223344444332      56665444334557999996554

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.34  E-value=0.015  Score=32.69  Aligned_cols=30  Identities=30%  Similarity=0.530  Sum_probs=24.2

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         8 ~~l~~~~G~svtl~C~~s~~~~~~~~WYrq   37 (106)
T d1a0ql1           8 SSLSASLGGKVTITCKASQDIKKYIGWYQH   37 (106)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCCCCCCeEEEEC
Confidence            356788999999999987666667999974

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.33  E-value=0.0062  Score=35.08  Aligned_cols=57  Identities=14%  Similarity=0.169  Sum_probs=35.5

Q ss_pred             cEEEeCCCcEEEEeEeccC---CCCeEEEEECCeEE--E--ecC-------------Cce-------EEeceEEEEcchh
Q psy16425        100 DMVIREGSNVTLKCAASGS---PKPNITWRREGGEL--I--AQG-------------NGQ-------EDFPFFKRTKKKK  152 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~---p~p~v~W~~~~~~~--~--~~~-------------~~~-------~~~~~l~i~~v~~  152 (163)
                      .+.+..|+++.|.|.....   ....+.|++.+...  .  ...             +..       .+...|+|.+|+.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            4667889999999987532   23458999865321  0  000             000       0135799999999


Q ss_pred             hhHh
Q psy16425        153 KKKK  156 (163)
Q Consensus       153 ~~~~  156 (163)
                      +|.+
T Consensus        91 ~D~G   94 (126)
T d1pkoa_          91 SDEG   94 (126)
T ss_dssp             GGCE
T ss_pred             hHCe
Confidence            9976

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.33  E-value=0.002  Score=37.08  Aligned_cols=69  Identities=13%  Similarity=0.287  Sum_probs=41.6

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcC-CceEEeee------eeEE--ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEE
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVD-TQTILTIQ------THVI--TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQ   71 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~-~~~~~~~~------~~~~--~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~   71 (163)
                      .+.|.|...+  ...-.+.|+++. +..+....      .-.+  .-.+|+.++.+. ...+.|+|.+++.+|++.|.|.
T Consensus        17 sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDTAvYyCA   96 (116)
T d1fn4b1          17 TLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCT   96 (116)
T ss_dssp             EECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCCEEEEEE
T ss_pred             CeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCCEEEEEE
Confidence            4556666543  455678899862 22111111      0000  113566666544 3567899999999999999997


Q ss_pred             E
Q psy16425         72 V   72 (163)
Q Consensus        72 ~   72 (163)
                      .
T Consensus        97 r   97 (116)
T d1fn4b1          97 R   97 (116)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0009  Score=38.06  Aligned_cols=54  Identities=13%  Similarity=0.048  Sum_probs=35.3

Q ss_pred             EeCCCcEEEEeEeccCCCCeEEEEECCeE-----EEe----------c----CCce-EEeceEEEEcchhhhHh
Q psy16425        103 IREGSNVTLKCAASGSPKPNITWRREGGE-----LIA----------Q----GNGQ-EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       103 ~~~g~~~~l~C~~~~~p~p~v~W~~~~~~-----~~~----------~----~~~~-~~~~~l~i~~v~~~~~~  156 (163)
                      +.+|+++.|.|.........+.|++....     +..          .    ++.. ..++.|+|.+|+.+|.+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G   84 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMG   84 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCE
Confidence            45899999999743333567999985421     100          0    0111 14578999999999976

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.0021  Score=35.91  Aligned_cols=29  Identities=21%  Similarity=0.408  Sum_probs=23.4

Q ss_pred             eCCCcEEEEeEeccC-CC-CeEEEEECCeEE
Q psy16425        104 REGSNVTLKCAASGS-PK-PNITWRREGGEL  132 (163)
Q Consensus       104 ~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~  132 (163)
                      ..|+.++|.|.+.|+ |. ..++|.++|..+
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~   46 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKI   46 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeec
Confidence            357889999999984 54 479999999865

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.015  Score=32.04  Aligned_cols=63  Identities=14%  Similarity=0.181  Sum_probs=37.3

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK   78 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   78 (163)
                      ++++.|..+ .|...++-++..+..+..       ....+......    =+.|.+++..++|.|.|.+...+..
T Consensus        22 ~~vIPC~vT-~P~~~VtL~~~~~~~~~p-------~g~~v~~Dpk~----Gf~I~~~~~~~~g~y~C~a~~~g~~   84 (95)
T d1fltx_          22 ELVIPCRVT-SPNITVTLKKFPLDTLIP-------DGKRIIWDSRK----GFIISNATYKEIGLLTCEATVNGHL   84 (95)
T ss_dssp             CEEECCCBS-CTTSCCEEEETTTEEECC-------CSSSEEEETTT----EEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CEEEEccCC-CCCceeEEEeccCCccCC-------CCCEEEECCCC----CEEEeCCCcccCeEEEEEEEECCEE
Confidence            567777765 566666544434433311       11112222211    4889999999999999999655543

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.012  Score=32.97  Aligned_cols=65  Identities=14%  Similarity=0.139  Sum_probs=33.7

Q ss_pred             eEEEeee--eccCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGE--MLMAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~--~~~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +.|.|.+  .......|.|++ ++..+...  .......++.+....      .|.|..-.......|+|.+.+.+
T Consensus        24 v~L~Cl~~~f~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~~~y~~~S------~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          24 IQLLCLVSGYTPGTIQITWLE-DGQVMDVDLSTASTTQEGELASTQS------ELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             EEEEEEEEEECCCCEEEEEEE-TTEECCGGGEEEEEEEETTEEEEEE------EEEEEHHHHHTTCCEEEEEEETT
T ss_pred             EEEEEEEEEEECCCcEEEEEE-CCEEccCCceeeeEeCCCCeEEEEE------EEEECHHHcCCCCEEEEEEEECC
Confidence            4444544  433445899999 55444211  111122333333322      56666554344567999997653

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.015  Score=31.51  Aligned_cols=62  Identities=10%  Similarity=0.227  Sum_probs=31.8

Q ss_pred             eeEEEeee--eccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGE--MLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~--~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .+.|.|.+  .......|.|++ ++..+..   ........++.+....      .|.|..   .+...|+|.+...
T Consensus        17 ~~~L~C~a~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~~gt~~~~s------~l~v~~---~~~~~ytC~V~H~   83 (89)
T d2mhaa1          17 KVTLRCWALGFYPADITLTWQL-NGEELIQDMELVETRPAGDGTFQKWA------SVVVPL---GKEQYYTCHVYHQ   83 (89)
T ss_dssp             EEEEEEEEESCBSSCCEEEEEE-TTEEECTTCEECCCEECSSSCEEEEE------EEEEES---STTTTCEEEEECS
T ss_pred             CEEEEEEEEeEECCCCEEEEEE-CCEEeCCCEEECcEecCCCCcEEEEE------EEEecC---cCCCEEEEEEEEC
Confidence            34455554  445567889999 5544321   1111223333333222      455543   3445799999654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0026  Score=35.25  Aligned_cols=56  Identities=18%  Similarity=0.189  Sum_probs=36.7

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEE--EecCCceE-------------------EeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGEL--IAQGNGQE-------------------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~--~~~~~~~~-------------------~~~~l~i~~v~~~~~~  156 (163)
                      +...+|++++|.|.........+.|++.....  ........                   ....|+|.++..+|.+
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG   80 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD   80 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCE
Confidence            45678999999999876667789999754321  11110000                   1235999999988875

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0022  Score=35.92  Aligned_cols=29  Identities=24%  Similarity=0.523  Sum_probs=24.0

Q ss_pred             eCCCcEEEEeEeccC-CCC-eEEEEECCeEE
Q psy16425        104 REGSNVTLKCAASGS-PKP-NITWRREGGEL  132 (163)
Q Consensus       104 ~~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~  132 (163)
                      ..|..++|.|.+.|+ |.. .++|.+||..+
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v   47 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERI   47 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEec
Confidence            468889999999985 543 79999999876

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.12  E-value=0.0063  Score=34.01  Aligned_cols=63  Identities=10%  Similarity=0.056  Sum_probs=32.1

Q ss_pred             eEEEeee--eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGE--MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~--~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|..  .......|.|.+ ++.............++.+....      .|.|..-.. +.+.|+|.+.+.
T Consensus        23 ~tl~Cl~~gf~P~~i~v~W~~-~~~~~~~~~~~~~~~~g~~s~~S------~L~v~~~~w-~~~~ytC~V~H~   87 (101)
T d1kcvh2          23 VTLGCLVKGYFPEPVTVAWNE-GALSSGVLTVSAVLQSGLYTLSS------NTTVASGTW-PSASVTCLVAHP   87 (101)
T ss_dssp             EEEEEEEEEEBSSCCEEEEGG-GTCCTTEEECCCEEETTEEEEEE------EEEEETTTT-TTSCCEEEEEEG
T ss_pred             EEEEEEEEEEeCCCCEEEEec-CCCcccceeeeeecCCCCEEEEE------EEEEchhhc-CCCeEEEEEEeC
Confidence            4444544  445568999976 44332111111122334433322      566654443 357899999654

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.11  E-value=0.021  Score=31.42  Aligned_cols=63  Identities=14%  Similarity=0.148  Sum_probs=32.3

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .+.|.|.+.+  .....|.|++ ++..+...  .......++.+....      .|.+..   +|...|+|.+....
T Consensus        18 ~vtL~C~a~gF~P~~i~v~W~~-~~~~~~~~~~~~~~~~~dgty~~~S------~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          18 RLQLVCHVSGFYPKPVWVMWMR-GEQEQQGTQLGDILPNANWTWYLRA------TLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             EEEEEEEEEEEBSSCEEEEEEE-TTEECTTCEECCCEECTTSCEEEEE------EEEEEG---GGCTTEEEEEEEGG
T ss_pred             eEEEEEEEEEEECCCcEEEEEE-CcccCCCceeCccEeCCCCcEEEEE------EEEEeC---ccCCEEEEEEEeCC
Confidence            4555555544  3446899999 55443111  111122333333222      455543   45567999996543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.11  E-value=0.0028  Score=36.39  Aligned_cols=30  Identities=23%  Similarity=0.447  Sum_probs=24.8

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         9 ~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq   38 (115)
T d1lp9e1           9 GLVTLTEGLPVMLNCTYQSTYSPFLFWYVQ   38 (115)
T ss_dssp             SEEEEETTSCEEECEEEECSSSCCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEEeCCCcCCeeEEEe
Confidence            356788999999999987666678999874

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.09  E-value=0.005  Score=35.19  Aligned_cols=30  Identities=37%  Similarity=0.751  Sum_probs=24.8

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.....+...+.|++.
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq   37 (114)
T d2cdea1           8 QSLIILEGKNCTLQCNYTVSPFSNLRWYKQ   37 (114)
T ss_dssp             SEEEEETTCCCEEEEEECCSCCSEEEEEEE
T ss_pred             CEEEEeCCCCEEEEEEEcCCCccCceEEEe
Confidence            367788999999999987766678999974

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.013  Score=33.03  Aligned_cols=64  Identities=13%  Similarity=0.112  Sum_probs=32.8

Q ss_pred             eEEEeee--eccCCCEEEEEEcCCceEEee----eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGE--MLMAESTVAWLRVDTQTILTI----QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~--~~~~~~~i~W~k~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|..  .......|.|++ ++..+...    .......++.+....      .|.|..-.......|+|.+...
T Consensus        23 ~tL~Cl~~~f~P~~i~v~W~~-ng~~~~~~~~~~~~~~~~~dgtys~~S------~L~v~~~~W~~g~~ytC~V~H~   92 (107)
T d1mjul2          23 ASVVCFLNNFYPKDINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSMSS------TLTLTKDEYERHNSYTCEATHK   92 (107)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEE-TTEEECTTEEEEECCCCTTTCCEEEEE------EEEEEHHHHHTCCEEEEEEECT
T ss_pred             eEEEEEEEEeECCCCEEEEEE-CCEEccCCeEeccccEecCCCCEEEEE------EEEECHHHhCCCCEEEEEEEEC
Confidence            3444544  434457899998 55544211    000111223333332      4566554433456899999654

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.042  Score=30.46  Aligned_cols=66  Identities=17%  Similarity=0.247  Sum_probs=36.4

Q ss_pred             eeEEEeeeecc-CC--CEEEEEEcCCceEEeee-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          4 RMLIEIGEMLM-AE--STVAWLRVDTQTILTIQ-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         4 ~~~~~~~~~~~-~~--~~i~W~k~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      .+.|.|...+. |.  ..+.|.+ ++....... ......++.+....      .|.|....-.....|+|.+.+..
T Consensus        21 ~v~L~Clv~gF~P~~~i~v~W~~-~~~~~~~~~~~~~~~~~gtys~~S------~L~v~~~~W~~~~~ytC~V~H~s   90 (102)
T d2fbjh2          21 PVIIGCLIHDYFPSGTMNVTWGK-SGKDITTVNFPPALASGGRYTMSN------QLTLPAVECPEGESVKCSVQHDS   90 (102)
T ss_dssp             SEEEEEEEEEEBSCCCEEEEESC-CCSSCEEEECCCEECSSSCEEEEE------EEEECGGGSCTTCEEEEEEEETT
T ss_pred             cEEEEEEEEcccCCCcEEEEEcc-CCCcCceeEeeeEecCCCCEEEEE------EEEEeHHHccCCCEEEEEEEECC
Confidence            45666776663 33  4567776 554432221 11223334444332      57777666555667999996543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.03  Score=29.45  Aligned_cols=60  Identities=13%  Similarity=0.276  Sum_probs=32.8

Q ss_pred             eeEEEeeeecc--CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceE
Q psy16425          4 RMLIEIGEMLM--AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQ   80 (163)
Q Consensus         4 ~~~~~~~~~~~--~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   80 (163)
                      .+.|.|.-...  +...-.|.| ++..+..         .+..     +..-.+.|..  .+++|.|.|.+...+....
T Consensus        14 k~~LtCnLt~s~~~i~ghrW~K-~gkvl~e---------d~~~-----~~~tey~V~~--~D~SGeY~CVFl~~P~~~a   75 (80)
T d3b5ha2          14 KILLTCSLNDSATEVTGHRWLK-GGVVLKE---------DALP-----GQKTEFKVDS--DDQWGEYSCVFLPEPMGTA   75 (80)
T ss_dssp             EEEEEEEEESCSSCCCEEEEES-SSEEEEC---------TTCC-----CSEEEEEECG--GGCCEEEEEEEESTTSCEE
T ss_pred             CEEEEEECCCCCCceeeeEEee-CCEEccc---------cCCC-----CCceEEEEec--CCCCceEEEEEcCCCccee
Confidence            45566654333  334457999 6666532         1100     0111455654  7899999999865444443

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.0079  Score=32.91  Aligned_cols=27  Identities=26%  Similarity=0.374  Sum_probs=22.0

Q ss_pred             CCcEEEEeEecc-CCC-CeEEEEECCeEE
Q psy16425        106 GSNVTLKCAASG-SPK-PNITWRREGGEL  132 (163)
Q Consensus       106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~  132 (163)
                      ++.+.|.|.+.| +|. ..++|.+||..+
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~   43 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLAS   43 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeC
Confidence            457899999998 465 379999999765

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0069  Score=32.35  Aligned_cols=19  Identities=32%  Similarity=0.471  Sum_probs=12.4

Q ss_pred             EEEEcccCCCCCeEEEEEE
Q psy16425         54 YLHIREVRESDRGWYMCQV   72 (163)
Q Consensus        54 ~L~i~~v~~~d~G~Y~C~~   72 (163)
                      .|.+.==...|+|.|+|.-
T Consensus        52 tltV~VkE~~~aGnYTChk   70 (87)
T d3d85d1          52 TLTIQVKEFGDAGQYTCHK   70 (87)
T ss_dssp             EEEEEECSGGGCEEEEEEE
T ss_pred             EEEEEEEeccCCcceeEeC
Confidence            3444433447899999973

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.022  Score=31.23  Aligned_cols=62  Identities=15%  Similarity=0.190  Sum_probs=31.2

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ++|.+.........|+|++ ++..+..   ........++.+....      .|.+   ...+...|+|.+...+
T Consensus        20 L~C~~~gFyP~~i~vtW~~-~g~~~~~~~~~~~~~~~~~~~~~~~s------~l~v---~~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          20 LRCWALGFYPAEITLTWQR-DGEDQTQDTELVETRPAGDRTFQKWA------AVVV---PSGEEQRYTCHVQHEG   84 (95)
T ss_dssp             EEEEEEEEBSSCCEEEEEE-TTEECGGGCEECCCEECSSSCEEEEE------EEEE---ETTCGGGEEEEEECTT
T ss_pred             EEEEEEeEeCCCCEEEEEE-CCEEcCCCceeccEEcCCCCeEEEEE------EEEE---EcCCCCEEEEEEEECc
Confidence            4444555656678889999 5543321   1111112222222111      3333   3445567999996553

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=95.82  E-value=0.0035  Score=35.09  Aligned_cols=31  Identities=32%  Similarity=0.499  Sum_probs=24.4

Q ss_pred             EeCCCcEEEEeEeccC-C-CCeEEEEECCeEEE
Q psy16425        103 IREGSNVTLKCAASGS-P-KPNITWRREGGELI  133 (163)
Q Consensus       103 ~~~g~~~~l~C~~~~~-p-~p~v~W~~~~~~~~  133 (163)
                      +..|..++|.|.+.|+ | ...++|++||..+.
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~   46 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVA   46 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCC
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeecc
Confidence            3457889999999985 5 35799999997763

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.79  E-value=0.022  Score=33.08  Aligned_cols=64  Identities=9%  Similarity=0.176  Sum_probs=33.0

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeee--------eEEecCCeEEEEeCCCceEEEEEcccCCCCCe-EEEEEEEeC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQT--------HVITKNHRIGVTHSETKAWYLHIREVRESDRG-WYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~~~   75 (163)
                      ++|.+.........|.|++ ++..+.....        .....++.|....      .|.|..-.-.+.| .|+|.+.+.
T Consensus        25 L~C~v~gf~P~~i~v~W~~-~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS------~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          25 LVCLATGFYPDHVELSWWV-NGKEVHSGVSTDPQPLKEQPALNDSRYSLSS------RLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             EEEEEEEEBSSCEEEEEEE-TTEEECSSEEECSSCEESCTTSTTCCEEEEE------EEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             EEEEEEeccCCCeEEEEEE-CCEEccCcEEecceeeeecccCCCCeEEEEE------EEEECHHHhCCCCCEEEEEEEEC
Confidence            3444444444567899999 5554421100        0011223343332      5666655545544 799999654

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.012  Score=32.91  Aligned_cols=63  Identities=6%  Similarity=0.047  Sum_probs=32.2

Q ss_pred             eEEEee--eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIG--EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~--~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|.  ........|.|.. ++.............++.+....      .|.|..-.. +.+.|+|.+.+.
T Consensus        23 ~~l~Cl~~gf~P~~i~v~W~~-~~~~~~~~~~~~~~~~g~ys~~S------~L~v~~~~w-~~~~ytC~V~H~   87 (102)
T d1mjuh2          23 VTLGCLVKGYFPEPVTLTWNS-GSLSSGVHTFPAVLQSDLYTLSS------SVTVTSSTW-PSQSITCNVAHP   87 (102)
T ss_dssp             EEEEEEEEEEBSSCCEEEEGG-GTBCTTEEECCCEEETTEEEEEE------EEEECTTTT-TTSCCEEEEEEG
T ss_pred             EEEEEEEeeeeCCCeEEEECc-CCccCCeEecccccCCCCEEEEE------EEEEehhHc-CCceEEEEEEEC
Confidence            444444  4445667899965 33222111111122334443322      566665554 356799999654

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=95.77  E-value=0.031  Score=30.53  Aligned_cols=62  Identities=10%  Similarity=0.105  Sum_probs=30.8

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEee----eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTI----QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      ++|.+..+-.+...|.|++ ++..+...    .......++.++...      .|.+   ...+...|+|.+...+
T Consensus        20 L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~~~~ty~~~s------~l~v---~~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          20 VTCRASGFYPWNITLSWRQ-DGVSLSHDTQQWGDVLPDGNGTYQTWV------ATRI---CQGEEQRFTCYMEHSG   85 (94)
T ss_dssp             EEEEEEEEBSSCCEEEEEE-TTEECCSTTSEECCCEECSSSCEEEEE------EEEE---ETTCGGGEEEEEEETT
T ss_pred             EEEEEEEEECCCcEEEEeE-CCeEcCCCeEEcCceEECCCCcEEEEE------EEEE---cCCCCCEEEEEEEECC
Confidence            3344444555678999999 55443211    111112222232221      3433   3455567999996554

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=95.77  E-value=0.015  Score=32.25  Aligned_cols=21  Identities=14%  Similarity=0.276  Sum_probs=14.1

Q ss_pred             eEEEeeeeccCCCEEEEEEcC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVD   25 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~   25 (163)
                      ++|.+..+-.....|.|++++
T Consensus        19 L~C~~~gFyP~~I~v~W~~ng   39 (98)
T d1u58a1          19 LRCFARDYYPADLEIRWWKDD   39 (98)
T ss_dssp             EEEEEEEEBSSCEEEEEEEEC
T ss_pred             EEEEEEEEcCCCCEEEEEECC
Confidence            444455566667889999954

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=95.72  E-value=0.0075  Score=33.52  Aligned_cols=31  Identities=32%  Similarity=0.619  Sum_probs=24.4

Q ss_pred             eCCCcEEEEeEeccC-C-CCeEEEEECCeEEEe
Q psy16425        104 REGSNVTLKCAASGS-P-KPNITWRREGGELIA  134 (163)
Q Consensus       104 ~~g~~~~l~C~~~~~-p-~p~v~W~~~~~~~~~  134 (163)
                      ..++.+.|.|.+.|+ | ...++|.+||..+..
T Consensus        15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   47 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMH   47 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccC
Confidence            446789999999985 5 457999999987643

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.004  Score=35.23  Aligned_cols=31  Identities=39%  Similarity=0.560  Sum_probs=24.4

Q ss_pred             eCCCcEEEEeEecc-CCCC-eEEEEECCeEEEe
Q psy16425        104 REGSNVTLKCAASG-SPKP-NITWRREGGELIA  134 (163)
Q Consensus       104 ~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~  134 (163)
                      ..++.+.|.|.+.+ +|.. .|.|+++|..+..
T Consensus        18 ~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~   50 (108)
T d1ow0a2          18 ALNELVTLTCLARGFSPKDVLVRWLQGSQELPR   50 (108)
T ss_dssp             TSSSEEEEEEEEEEESSSCCEEEEEETTEECCG
T ss_pred             ccCCceEEEEEEEEeECCCEEEEEEECCeEcCC
Confidence            34778999999987 5644 7999999987643

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.051  Score=30.36  Aligned_cols=65  Identities=14%  Similarity=0.162  Sum_probs=33.2

Q ss_pred             eEEEeee--eccCCCEEEEEEcCCceEEeeeeeE----EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425          5 MLIEIGE--MLMAESTVAWLRVDTQTILTIQTHV----ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~--~~~~~~~i~W~k~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   76 (163)
                      +.|.|..  .......|.|++ ++..........    ...++.+....      .|.|..-.-.....|+|.+.+.+
T Consensus        23 ~~L~Clv~~f~P~~i~v~W~~-ng~~~~~~~~~~~~~~~~~dgtys~~S------~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          23 ASVVCLLNNFYPREAKVQWKV-DNALQSGNSQESVTEQDSKDSTYSLSS------TLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEE-TTEECCSSEEEEECCCCTTTCCEEEEE------EEEEEHHHHTTCCEEEEEEECTT
T ss_pred             eEEEEEEEEeeCCCCEEEEEE-CCEECCCCEEEecccccCCCCcEEEEE------EEEECHHHhCCCCEEEEEEEECC
Confidence            4445544  433457899999 554432111110    11223343332      56665554344458999996543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.60  E-value=0.039  Score=30.03  Aligned_cols=48  Identities=17%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQV   72 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~   72 (163)
                      .|.|.|...+.  ..|.|.+ +...+.       ...++           .|.+.+.+ .+++|.|.|..
T Consensus        16 tV~LTCP~~~~--~~I~Wkk-n~~~i~-------g~~~~-----------~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2          16 SVELTCPLDSD--ENLKWEK-NGQELP-------QKHDK-----------HLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             EEEEECSSCCC--TTCEEEE-TTEEEC-------SCCCS-----------EEEEESCCTTTSCEEEEEEC
T ss_pred             EEEEECCCCCC--CceEEee-ccccCC-------CCCCc-----------EEEEccccccccCcceEEec
Confidence            57788876543  4589988 444431       11111           46676754 58999999975

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.014  Score=31.72  Aligned_cols=29  Identities=45%  Similarity=0.768  Sum_probs=22.8

Q ss_pred             CCCcEEEEeEeccC-CC-CeEEEEECCeEEE
Q psy16425        105 EGSNVTLKCAASGS-PK-PNITWRREGGELI  133 (163)
Q Consensus       105 ~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~  133 (163)
                      .++.+.|.|.+.|+ |. ..++|.++|..+.
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~   44 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELI   44 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEEC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeC
Confidence            35689999999985 43 3689999998764

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.017  Score=29.87  Aligned_cols=46  Identities=20%  Similarity=0.402  Sum_probs=28.2

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN   73 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   73 (163)
                      +.|+|.|.      ..|.|++ ++..+...      ...            .|-+-..-..-.|.|.|...
T Consensus        10 ~~V~L~Cn------~si~W~k-~~~~~~~~------~~k------------~lnLG~~~~DPRG~Y~C~~~   55 (74)
T d1xiwb_          10 DRVFVNCN------TSITWVE-GTVGTLLS------DIT------------RLDLGKRILDPRGIYRCNGT   55 (74)
T ss_dssp             TEEEEECS------SCEEEEE-ECCCEEEG------GGT------------EEEEEEGGGCCEEEEEEC--
T ss_pred             CeEEEEcc------CeeEEec-CCcccccC------Ccc------------EeecCCcccCCCcceEeCCc
Confidence            46888884      4699999 44433211      011            45666666777899999763

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.046  Score=29.10  Aligned_cols=62  Identities=23%  Similarity=0.423  Sum_probs=35.5

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   82 (163)
                      +.|+|.|..   ....|.|++ ++..+...     ....+           +|-+-..-..-.|.|.|....    ....
T Consensus        23 GsV~L~Cn~---~~k~i~W~k-dg~~i~~~-----~~~~k-----------tlnLG~~~~DPRGiY~C~g~~----~~s~   78 (86)
T d1jbja1          23 GSVLLTCGL---TDKTIKWLK-DGSIISPL-----NATKN-----------TWNLGNNAKDPRGTYQCQGAK----ETSN   78 (86)
T ss_dssp             CEEEEECSS---SCSCEEEEE-TTEECCCS-----SCCSS-----------CCEEEETTSCCEEEEEEEESS----CEEE
T ss_pred             CeEEEEeCC---CCcEEEEec-CCceeccc-----ccccc-----------eeecCCcccCCCcceEcCCCc----ccCc
Confidence            457888843   234799999 55544210     00111           455666667777999997622    2223


Q ss_pred             EEEEEc
Q psy16425         83 YLEVVV   88 (163)
Q Consensus        83 ~l~v~~   88 (163)
                      .|.|++
T Consensus        79 ~LQVYY   84 (86)
T d1jbja1          79 PLQVYY   84 (86)
T ss_dssp             EEEEEC
T ss_pred             cEEEEE
Confidence            566654

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.50  E-value=0.0056  Score=34.41  Aligned_cols=64  Identities=17%  Similarity=0.202  Sum_probs=32.5

Q ss_pred             eEEEeee--eccCCCEEEEEEcCCceEEee-e-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGE--MLMAESTVAWLRVDTQTILTI-Q-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~--~~~~~~~i~W~k~~~~~~~~~-~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|.+  .......|.|++ ++..+... . ......++.+....      .|.|..-...+...|+|.+.+.
T Consensus        23 ~~l~C~~~gf~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~~tys~~S------~l~v~~~~w~~~~~ytC~V~H~   90 (104)
T d1nfde2          23 ATLVCLVNDFYPGSATVTWKA-NGATINDGVKTTKPSKQGQNYMTSS------YLSLTADQWKSHNRVSCQVTHE   90 (104)
T ss_dssp             ECCCEEEEEEBSSCCEEEEEE-TTEEECSSCBCCCCBCSSSCEEEEE------BCCEEHHHHHTCSCEEEEEECT
T ss_pred             EEEEEEEEEeeCCCCEEEEEE-CCEECCCCEEeccccCCCceEEEEE------EEEEcHHHcCCCCEEEEEEEEC
Confidence            3344444  434457999999 55554311 1 11112233333332      3445444444556799999654

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.48  E-value=0.035  Score=31.09  Aligned_cols=62  Identities=11%  Similarity=0.149  Sum_probs=30.5

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ++|.+.........|.|++ ++..+...  .......++.+....      .|.|..-..  ...|+|.+.+.
T Consensus        29 l~Clv~~f~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~gt~~~~S------~L~v~~~~w--~~~ytC~V~H~   92 (107)
T d1hxmb2          29 YLCLLEKFFPDVIKIHWEE-KKSNTILGSQEGNTMKTNDTYMKFS------WLTVPEKSL--DKEHRCIVRHE   92 (107)
T ss_dssp             EEEEEEEESSCCEEEEEEE-SSSCCCCCCEECCCEECSSSEEEEE------EEEECTGGG--GSCEEEEEEET
T ss_pred             EEEEEeEEeCCceEEEEEE-CCeEccCCEEccceecCCCeEEEEE------EEEEecccC--CCeEEEEEEEC
Confidence            3444444545567899999 44433211  111112233333221      455544332  23699999654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=95.46  E-value=0.034  Score=31.50  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=35.8

Q ss_pred             cEEEeCCCcEEEEeEecc--CCCCeEEEEECC--e---EEE-ecCCceE------EeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASG--SPKPNITWRREG--G---ELI-AQGNGQE------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~--~p~p~v~W~~~~--~---~~~-~~~~~~~------~~~~l~i~~v~~~~~~  156 (163)
                      .+...+|++++|.|...+  .....+.|++..  .   .+. ...+...      ..-.|+|.++..+|..
T Consensus         8 s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa   78 (112)
T d1sq2n_           8 SVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGG   78 (112)
T ss_dssp             EEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCE
Confidence            567788999999998754  345679999731  1   111 1111111      1236888999888863

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.012  Score=33.17  Aligned_cols=65  Identities=14%  Similarity=0.176  Sum_probs=32.9

Q ss_pred             eeEEEeeeec--cCCCEEEEEEcCCceEEeee-----eeE--EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425          4 RMLIEIGEML--MAESTVAWLRVDTQTILTIQ-----THV--ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT   74 (163)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~-----~~~--~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   74 (163)
                      .+.|.|...+  .....|.|++ ++..+....     ...  ...++.+....      .|.|..-.......|+|.+.+
T Consensus        22 ~~tl~C~~~~f~P~~i~v~W~~-~g~~~~~~~~~t~~~~~~~~~~~gtys~~S------~L~v~~~~w~~g~~ytC~V~H   94 (108)
T d1ow0a2          22 LVTLTCLARGFSPKDVLVRWLQ-GSQELPREKYLTWASRQEPSQGTTTFAVTS------ILRVAAEDWKKGDTFSCMVGH   94 (108)
T ss_dssp             EEEEEEEEEEESSSCCEEEEEE-TTEECCGGGSEECCCEECSCSSSCCEEEEE------EEEEEHHHHHHTCCEEEEEEC
T ss_pred             ceEEEEEEEEeECCCEEEEEEE-CCeEcCCCceEcccceecccCCCCcEEEEE------EEEEcHHHhCCCCEEEEEEEe
Confidence            3555555544  3456899998 555442110     000  01122333222      455554443345689999965


Q ss_pred             C
Q psy16425         75 D   75 (163)
Q Consensus        75 ~   75 (163)
                      .
T Consensus        95 ~   95 (108)
T d1ow0a2          95 E   95 (108)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.072  Score=28.01  Aligned_cols=50  Identities=18%  Similarity=0.464  Sum_probs=31.8

Q ss_pred             ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425          3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV   72 (163)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   72 (163)
                      +.|+|.|.   .....|.|++ ++..+...     ....+           +|-+-..-..-.|.|.|..
T Consensus        18 g~V~L~Cn---~~~k~i~W~k-dg~~i~~~-----~~~~k-----------tlnLG~~~~DPRG~Y~C~~   67 (81)
T d1sy6a1          18 GSVLLTCD---AEAKNITWFK-DGKMIGFL-----TEDKK-----------KWNLGSNAKDPRGMYQCKG   67 (81)
T ss_dssp             SEEEEEEC---SCSSEEEEEE-TTEEEEEE-----ESSCC-----------CEEEEEGGGCCEEEEEEES
T ss_pred             CeEEEEeC---CCCcEEEEec-CCeEeecc-----cCCcc-----------eeecCCcccCCCcceEcCC
Confidence            46788883   4445899999 66654221     11111           4666667777789999975

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=95.18  E-value=0.02  Score=31.99  Aligned_cols=30  Identities=23%  Similarity=0.372  Sum_probs=23.7

Q ss_pred             eCCCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425        104 REGSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus       104 ~~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      ..|+..+|.|.+.| +|. ..+.|.+||..+.
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~   47 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVE   47 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECS
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecC
Confidence            45788899999998 454 4699999998753

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.015  Score=31.95  Aligned_cols=30  Identities=27%  Similarity=0.520  Sum_probs=24.0

Q ss_pred             CCCcEEEEeEecc-CCCC-eEEEEECCeEEEe
Q psy16425        105 EGSNVTLKCAASG-SPKP-NITWRREGGELIA  134 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~  134 (163)
                      .++.++|.|.+.| +|.. .+.|.+||..+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~   45 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDA   45 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECcc
Confidence            4567899999998 5654 7999999988743

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.018  Score=31.54  Aligned_cols=29  Identities=31%  Similarity=0.586  Sum_probs=23.6

Q ss_pred             CCCcEEEEeEecc-CCCC-eEEEEECCeEEE
Q psy16425        105 EGSNVTLKCAASG-SPKP-NITWRREGGELI  133 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~  133 (163)
                      .|+.+.|.|.+.| +|.. .+.|.+||..+.
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~   44 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQE   44 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECC
Confidence            4778999999998 5653 799999998753

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.048  Score=29.25  Aligned_cols=57  Identities=19%  Similarity=0.436  Sum_probs=33.6

Q ss_pred             eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCC-CCCeEEEEEEE
Q psy16425          4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRE-SDRGWYMCQVN   73 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~   73 (163)
                      .|.|.|..  .....|.|.+. +..+.-.     ..+........     .|.+.+.+. +++|.|.|.+.
T Consensus        12 tV~LTCP~--~~~~~i~W~~n-~~~~~~~-----~~~~~~~~~~~-----~l~L~dfSe~e~sGyY~C~~~   69 (91)
T d1xiwa_          12 TVILTCPQ--YPGSEILWQHN-DKNIGGD-----EDDKNIGSDED-----HLSLKEFSELEQSGYYVCYPR   69 (91)
T ss_dssp             EEEEECSS--CTTSCEEEEET-TEEESSS-----CSCTTEEEETT-----EEEETTCCHHHHCEEEEEEET
T ss_pred             EEEEECCC--CCCCceeeeec-cccccCC-----Ccccccccccc-----eEEecccCccccCceEEEEcC
Confidence            57788854  34467999994 3333100     01111112221     578888765 89999999983

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0084  Score=33.65  Aligned_cols=28  Identities=32%  Similarity=0.674  Sum_probs=22.4

Q ss_pred             CCcEEEEeEecc-CCCC-eEEEEECCeEEE
Q psy16425        106 GSNVTLKCAASG-SPKP-NITWRREGGELI  133 (163)
Q Consensus       106 g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~  133 (163)
                      +..+.|.|.+.+ +|.. .++|.++|..+.
T Consensus        21 ~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~   50 (104)
T d1o0va1          21 PPTIQLLCLVSGYTPGTIQITWLEDGQVMD   50 (104)
T ss_dssp             CSEEEEEEEEEEECCCCEEEEEEETTEECC
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECCEEcc
Confidence            456889999988 5655 699999998764

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=95.04  E-value=0.017  Score=32.03  Aligned_cols=30  Identities=33%  Similarity=0.554  Sum_probs=23.9

Q ss_pred             eCCCcEEEEeEeccC-CC-CeEEEEECCeEEE
Q psy16425        104 REGSNVTLKCAASGS-PK-PNITWRREGGELI  133 (163)
Q Consensus       104 ~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~  133 (163)
                      ..|...+|.|.+.|+ |. ..++|.+||..+.
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~   48 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVT   48 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEEEC
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEecc
Confidence            457788999999985 54 4799999998764

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.039  Score=30.64  Aligned_cols=63  Identities=14%  Similarity=0.190  Sum_probs=31.0

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +++.+..+......|.|.+ ++...... .......++.+....      .|.|..-.. ....|+|.+.+.
T Consensus        25 l~Cl~~~f~P~~i~v~W~~-~~~~~~~~t~~~~~~~~gtys~~S------~L~v~~~~w-~~~~ytC~V~H~   88 (103)
T d1c5ch2          25 LGCLVKDYFPEPVTVSWNS-GALTSGVHTFPAVLQSSGLYSLSS------VVTVPSSSL-GTQTYICNVNHK   88 (103)
T ss_dssp             EEEEEEEEBSSCCEEEEGG-GTBCTTEEECCCEECTTSCEEEEE------EEEEEGGGG-GTCCCEEEEEEG
T ss_pred             EEEEEEeEeCCCeEEEECc-CCCCCCEEECCCeECCCCCEEEEE------EEEECcccc-CCCeEEEEEEeC
Confidence            3334444545667899976 43321111 111122333343332      456654433 235699999664

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=94.92  E-value=0.0078  Score=33.43  Aligned_cols=29  Identities=28%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             CCCcEEEEeEeccC-CC-CeEEEEECCeEEE
Q psy16425        105 EGSNVTLKCAASGS-PK-PNITWRREGGELI  133 (163)
Q Consensus       105 ~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~  133 (163)
                      .++..+|.|.+.|+ |. ..++|.+||..+.
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~   47 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEK   47 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcC
Confidence            35667899999984 54 3799999998763

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.86  E-value=0.012  Score=33.48  Aligned_cols=62  Identities=13%  Similarity=0.151  Sum_probs=29.1

Q ss_pred             eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCC---CeEEEEEEEeCC
Q psy16425          5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESD---RGWYMCQVNTDP   76 (163)
Q Consensus         5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d---~G~Y~C~~~~~~   76 (163)
                      ++|.+.........|.|.+++..... ........++.+...         ..-.+..+|   ...|+|.+.+.+
T Consensus        32 L~C~v~gf~P~~i~v~W~~~~~~~~~-~~~~~~~~dgtys~~---------S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          32 LTCMITGFYPADINVEWDSSEPSDYK-NTPPVFDTDGSFFLY---------SRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             EEEEEESCCSSCCEEESSSCCTTTEE-EEEEECCSSCCCEEE---------EEECCCSSCCHHHHCCEEEEEETT
T ss_pred             EEEEEEeeECCCcEEEEeeCCCCCcE-EcccEECCCCcEEEE---------EEEEECHHHhCCCCEEEEEEEeCC
Confidence            33333344344689999874332221 111122223333322         223344444   456999997654

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.14  Score=28.41  Aligned_cols=64  Identities=9%  Similarity=0.119  Sum_probs=31.1

Q ss_pred             eEEEeeee--ccCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCC--CCeEEEEEEEeC
Q psy16425          5 MLIEIGEM--LMAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRES--DRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~--~~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~--d~G~Y~C~~~~~   75 (163)
                      +.|.|.+.  ......|.|.++ +......  .......++.+....      .|.|..-...  ....|+|.+.+.
T Consensus        24 ~~l~Cl~~gF~P~~i~v~W~~~-~~~~~~~~~~~~~~~~~gtys~~S------~L~v~~~eW~~~~~~~ytC~V~H~   93 (105)
T d1dn0b2          24 VAVGCLAQDFLPDSITFSWKYK-NNSDISSTRGFPSVLRGGKYAATS------QVLLPSKDVMAGTDEHVVCKVQHP   93 (105)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEET-TSCEECCEEECCCEEETTEEEEEE------EEEECTTCC---CCCEEEEEEECT
T ss_pred             eEEEEEEecccCCcEEEEEEEC-CccccCCEEcceEEccCCCEEEEE------EEEEcHHHhccCCCCEEEEEEEEC
Confidence            44455544  344589999984 4433211  111112233333222      4555544321  224799999654

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=94.80  E-value=0.011  Score=32.79  Aligned_cols=29  Identities=21%  Similarity=0.374  Sum_probs=20.0

Q ss_pred             CCCcEEEEeEeccC-CC-CeEEEEECCeEEE
Q psy16425        105 EGSNVTLKCAASGS-PK-PNITWRREGGELI  133 (163)
Q Consensus       105 ~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~  133 (163)
                      .++..+|.|.+.|+ |. ..+.|.+||..+.
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~   45 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEET   45 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcC
Confidence            36677899999984 53 4799999997753

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.79  E-value=0.033  Score=31.17  Aligned_cols=30  Identities=30%  Similarity=0.567  Sum_probs=24.5

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++|+|.|.........+.|++.
T Consensus         9 ~~l~v~~G~svtl~C~~s~~~~~~~~WYrq   38 (107)
T d1kcvl1           9 KSMGMSVGEAVTLNCKASENVGTYVSWYQQ   38 (107)
T ss_dssp             SEEEEETTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEeECCCCCEEEEEEecCCcCCceEEEEc
Confidence            367788999999999987665667999974

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0061  Score=33.73  Aligned_cols=56  Identities=20%  Similarity=0.132  Sum_probs=37.3

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce---EEeceEEEEcchhhhHhh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ---EDFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~---~~~~~l~i~~v~~~~~~~  157 (163)
                      ..+..|++|+|.|... .+...+..++++..........   .+...|.|.+|+.+|++.
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~   71 (96)
T d1ugna1          13 SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGR   71 (96)
T ss_dssp             SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEE
T ss_pred             CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCe
Confidence            4577899999999964 3455688888775321111111   134679999999998764

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.76  E-value=0.032  Score=31.01  Aligned_cols=53  Identities=23%  Similarity=0.284  Sum_probs=26.0

Q ss_pred             CCEEEEEEcCCceEEeee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425         16 ESTVAWLRVDTQTILTIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus        16 ~~~i~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      ...|.|++ ++..+....  ......++.+....      .|.|..-.-.....|+|.+.+.
T Consensus        34 ~v~v~W~~-~g~~~~~~~~~~~~~~~~gtys~~S------~L~v~~~~W~~g~~~tC~V~H~   88 (103)
T d1i1ca1          34 EVRFSWFI-DDVEVHTAQTHAPEKQSNSTLRSVS------ELPIVERDWLNGKTFKCKVNSG   88 (103)
T ss_dssp             CCEEEEEE-SSCEECCCEECCCEECTTSCEEEEE------EEECCHHHHHTTCCEEEEEECS
T ss_pred             CEEEEEEE-CCccccCCEECCcEECCCCCEEEEE------EEEECHHHhcCCCEEEEEEEeC
Confidence            47889999 444432211  11122233333222      4554433323344699999654

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.74  E-value=0.035  Score=31.11  Aligned_cols=30  Identities=27%  Similarity=0.494  Sum_probs=23.8

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         9 ~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ   38 (107)
T d1mexl1           9 KFMSTSLGNRVSVTCKASQNVGTNVAWFQQ   38 (107)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCceEEEec
Confidence            356788999999999976555567999974

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=94.69  E-value=0.046  Score=30.00  Aligned_cols=55  Identities=13%  Similarity=0.081  Sum_probs=36.8

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEE--EecCC---ceEEeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGEL--IAQGN---GQEDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~--~~~~~---~~~~~~~l~i~~v~~~~~~  156 (163)
                      ..+..|.+|+|.|.... ....+.+++++...  .....   .......|.|.+|+..|++
T Consensus        11 ~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G   70 (96)
T d1nkra1          11 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAG   70 (96)
T ss_dssp             SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCE
T ss_pred             CccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCe
Confidence            45778999999999753 35578888876531  11111   1124467999999998875

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.66  E-value=0.039  Score=30.93  Aligned_cols=30  Identities=23%  Similarity=0.549  Sum_probs=24.2

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|...+.....+.|++.
T Consensus         9 ~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ   38 (107)
T d1ospl1           9 SSFSVSLGDRVTITCKASEDIYSRLAWYQQ   38 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEecCCCcccccEEEEc
Confidence            367788999999999987655557999974

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=94.66  E-value=0.039  Score=30.92  Aligned_cols=30  Identities=23%  Similarity=0.582  Sum_probs=24.2

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         9 ~sl~~~~G~svtL~C~~s~~~~~~~~WYrq   38 (107)
T d1tjgl1           9 SSLSASVGDRITITCRASQGVTSALAWYRQ   38 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECCCCCccEEEEec
Confidence            367788999999999987555667899874

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=94.63  E-value=0.025  Score=30.96  Aligned_cols=28  Identities=39%  Similarity=0.798  Sum_probs=22.3

Q ss_pred             CCcEEEEeEeccC-CCC-eEEEEECCeEEE
Q psy16425        106 GSNVTLKCAASGS-PKP-NITWRREGGELI  133 (163)
Q Consensus       106 g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~  133 (163)
                      ++.+.|.|.+.++ |.. .+.|.++|..+.
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~   44 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLS   44 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcC
Confidence            4568999999984 543 799999998764

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.61  E-value=0.063  Score=29.16  Aligned_cols=22  Identities=27%  Similarity=0.582  Sum_probs=18.6

Q ss_pred             CCcEEEEeEeccCCCCeEEEEE
Q psy16425        106 GSNVTLKCAASGSPKPNITWRR  127 (163)
Q Consensus       106 g~~~~l~C~~~~~p~p~v~W~~  127 (163)
                      |++++|.|.........+.|++
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyr   22 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYR   22 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEE
Confidence            7889999998776667899987

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.58  E-value=0.027  Score=31.83  Aligned_cols=30  Identities=30%  Similarity=0.648  Sum_probs=24.3

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|+++.|.|...+.....+.|++.
T Consensus         8 ~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq   37 (113)
T d2bnqd1           8 AALSVPEGENLVLNCSFTDSAIYNLQWFRQ   37 (113)
T ss_dssp             SEEEEETTCCEEEEEEESCCCEEEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEEecCcccCCeEEEe
Confidence            356788999999999987765567999973

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.57  E-value=0.037  Score=31.07  Aligned_cols=30  Identities=20%  Similarity=0.479  Sum_probs=24.4

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         9 ~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq   38 (107)
T d1c5cl1           9 SSLSASLGERVSLTCRTSQEISGYLSWLQQ   38 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCCCCEEEEEc
Confidence            366788999999999987666667999973

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.56  E-value=0.039  Score=30.83  Aligned_cols=29  Identities=24%  Similarity=0.617  Sum_probs=24.0

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|...+.....+.|++.
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq   37 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQ   37 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEec
Confidence            57788999999999987655667999974

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.018  Score=32.72  Aligned_cols=28  Identities=25%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCC----CeEEEEE
Q psy16425        100 DMVIREGSNVTLKCAASGSPK----PNITWRR  127 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~----p~v~W~~  127 (163)
                      .....+|+++.|.|.....+.    ..+.|++
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~   44 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLI   44 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEE
Confidence            456789999999999865432    2488986

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.077  Score=29.35  Aligned_cols=66  Identities=15%  Similarity=0.190  Sum_probs=33.0

Q ss_pred             eeEEEeeeecc-C---CCEEEEEEcCCceEEe-eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGEMLM-A---ESTVAWLRVDTQTILT-IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~~~~-~---~~~i~W~k~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .+.|.|...+. |   ...+.|++.++..... ........++.+....      .|.|..-.-.....|+|.+.+.
T Consensus        18 ~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S------~L~v~~~~w~~g~~~tC~V~H~   88 (103)
T d1fp5a1          18 SPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTS------TLPVGTRDWIEGETYQCRVTHP   88 (103)
T ss_dssp             CCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEE------EEECCHHHHHTTCCEEEEEECS
T ss_pred             CeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEE------EEEEcHHHhCCCCeEEEEEEEC
Confidence            34556655442 2   3577888855433221 1122223344444332      4555444333456799999654

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=94.48  E-value=0.027  Score=30.98  Aligned_cols=28  Identities=36%  Similarity=0.643  Sum_probs=22.5

Q ss_pred             CCCcEEEEeEecc-CCCC-eEEEEECCeEE
Q psy16425        105 EGSNVTLKCAASG-SPKP-NITWRREGGEL  132 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~  132 (163)
                      .++.+.|.|.+.| +|.. .+.|.+++...
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~   44 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQ   44 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEEC
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccC
Confidence            3567999999998 5755 79999998764

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.028  Score=30.84  Aligned_cols=28  Identities=36%  Similarity=0.737  Sum_probs=22.1

Q ss_pred             CCcEEEEeEeccC-CC-CeEEEEECCeEEE
Q psy16425        106 GSNVTLKCAASGS-PK-PNITWRREGGELI  133 (163)
Q Consensus       106 g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~  133 (163)
                      ++.+.|.|.+.|+ |. ..++|.++|..+.
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~   44 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQT   44 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECG
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcC
Confidence            5678999999985 43 3689999998764

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.39  E-value=0.036  Score=31.04  Aligned_cols=30  Identities=20%  Similarity=0.615  Sum_probs=23.8

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         9 ~slsv~~G~svtl~C~~s~~~~~~~~WYrQ   38 (106)
T d1i8ka_           9 ASLSVATGEKVTIRCMTSTDIDDDMNWYQQ   38 (106)
T ss_dssp             SEEECCTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCCccEEEEeC
Confidence            356788999999999887655567999964

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.34  E-value=0.053  Score=30.45  Aligned_cols=30  Identities=20%  Similarity=0.431  Sum_probs=24.1

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         8 ~s~~~~~G~svtl~C~~s~~~~~~~~WYrq   37 (111)
T d1bd2d1           8 PSLSVQEGRISILNCDYTNSMFDYFLWYKK   37 (111)
T ss_dssp             SEEEEETTSCEEEEEEECCTTCCEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEeCCCCCCeEEEEEE
Confidence            366788999999999877665667889874

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=94.28  E-value=0.11  Score=29.30  Aligned_cols=58  Identities=16%  Similarity=0.241  Sum_probs=36.1

Q ss_pred             CcEEEeCCCcEEEEeEecc--CCCCeEEEEEC--CeE---EE-ecCCceE------EeceEEEEcchhhhHh
Q psy16425         99 TDMVIREGSNVTLKCAASG--SPKPNITWRRE--GGE---LI-AQGNGQE------DFPFFKRTKKKKKKKK  156 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~--~p~p~v~W~~~--~~~---~~-~~~~~~~------~~~~l~i~~v~~~~~~  156 (163)
                      ..+...+|++++|.|...+  .+...+.|++.  +..   +. ...+...      ....|+|.++..+|..
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   79 (113)
T d1vesa_           8 RTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSG   79 (113)
T ss_dssp             SEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcc
Confidence            3667889999999998864  34456999963  221   11 1111111      1236888999888863

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.27  E-value=0.047  Score=30.54  Aligned_cols=30  Identities=30%  Similarity=0.625  Sum_probs=24.0

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         9 ~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq   38 (107)
T d1j1pl_           9 ATLSVTPGNSVSLSCRASQSIGNNLHWYQQ   38 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEecCCCCcceEEEEe
Confidence            367788999999999986555567999974

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.22  E-value=0.051  Score=30.94  Aligned_cols=29  Identities=17%  Similarity=0.589  Sum_probs=24.1

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ...+.+|++++|.|...+.....+.|++.
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ   38 (118)
T d2ij0c1          10 MVIVKSGTSVKIECRSLDTNIHTMFWYRQ   38 (118)
T ss_dssp             EEEECTTCCEEEEEEECSSCCSEEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEcCCcccEEEEEEE
Confidence            56788999999999987666678999974

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=94.15  E-value=0.024  Score=31.55  Aligned_cols=29  Identities=17%  Similarity=0.548  Sum_probs=23.2

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|.........+.|++.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ   35 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQ   35 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEc
Confidence            67788999999999876554556899974

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=94.09  E-value=0.049  Score=30.42  Aligned_cols=30  Identities=23%  Similarity=0.526  Sum_probs=24.1

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         8 ~sl~~~~G~svtL~C~~~~~~~~~~~WYrq   37 (106)
T d1op3k1           8 STLSASVGDTITITCRASQSIETWLAWYQQ   37 (106)
T ss_dssp             SEEEECTTCEEEEEEEESSCCTTCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCcEEEEec
Confidence            367788999999999887655567999975

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.09  E-value=0.054  Score=30.31  Aligned_cols=30  Identities=27%  Similarity=0.536  Sum_probs=24.0

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         9 ~sl~~~~G~svtl~C~~s~~~~~~~~WYrq   38 (107)
T d1d5il1           9 SSMYASLGERVTITCKASQDINSYLSWFQQ   38 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCCCCCccceeEe
Confidence            356788999999999987665667889864

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.93  E-value=0.046  Score=30.65  Aligned_cols=30  Identities=23%  Similarity=0.498  Sum_probs=24.0

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|+++.|.|...+.....+.|++.
T Consensus        11 ~~l~~~~G~svtL~C~~s~~~~~~~~WYrq   40 (109)
T d1bwwa_          11 SSLSASVGDRVTITCQASQDIIKYLNWYQQ   40 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEecCCCCCcceEeee
Confidence            367788999999999987655567889973

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.11  Score=28.72  Aligned_cols=65  Identities=14%  Similarity=0.125  Sum_probs=32.5

Q ss_pred             eeEEEeeeecc-C---CCEEEEEEcCCceEEeee--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          4 RMLIEIGEMLM-A---ESTVAWLRVDTQTILTIQ--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         4 ~~~~~~~~~~~-~---~~~i~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      .+.|.|...+. |   ...+.|.+ ++..+....  ......++.+....      .|.|..-.-.....|+|.+.+.
T Consensus        20 ~~~L~C~~~gf~P~~~~v~~~W~~-~~~~~~~~~~~~~~~~~~gtys~~S------~L~v~~~~W~~g~~ytC~V~H~   90 (105)
T d1l6xa1          20 TPEVTCVVVDVSHEDPEVKFNWYV-DGVEVHNAKTKPREEQYNSTYRVVS------VLTVLHQDWLNGKEYKCKVSNK   90 (105)
T ss_dssp             CCEEEEEEEEECSSSCCCEEEEEE-TTEEECCCEECCCEECTTSCEEEEE------EEECCHHHHHTTCCEEEEEECT
T ss_pred             ceEEEEEEEEEeCCCCeEEEEEee-CCeECCCcEECCcEECCCCcEEEEE------EEEEcHHHcCCCCEEEEEEEeC
Confidence            34455555432 2   36778988 555442211  11122334443332      4555544333445799999654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=93.88  E-value=0.046  Score=30.56  Aligned_cols=29  Identities=21%  Similarity=0.516  Sum_probs=23.1

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|.........+.|++.
T Consensus         8 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrq   36 (110)
T d1u3ha1           8 SLTVWEGETAILNCSYENSAFDYFPWYQQ   36 (110)
T ss_dssp             SEEEETTSCEEEEEEECCTTEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEecCCCCcEEEEEee
Confidence            56788999999999986544456899974

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.82  E-value=0.065  Score=30.09  Aligned_cols=30  Identities=23%  Similarity=0.494  Sum_probs=23.9

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         9 ~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ   38 (109)
T d1mqkl_           9 VSLSASVGETVTITCRASENIYSYLAWYQQ   38 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCcCcccceeec
Confidence            356788999999999987655566999983

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.79  E-value=0.065  Score=30.06  Aligned_cols=29  Identities=31%  Similarity=0.618  Sum_probs=23.5

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|.........+.|++.
T Consensus        10 ~l~~~~G~svtL~C~~s~~~~~~~~WYrq   38 (108)
T d1jhll_          10 YLVASPGETITINCRASKSISKSLAWYQE   38 (108)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             eEEecCCCCEEEEEEccCCcCCceEEEEc
Confidence            56788899999999987655567899874

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=93.75  E-value=0.058  Score=30.44  Aligned_cols=30  Identities=17%  Similarity=0.511  Sum_probs=23.7

Q ss_pred             CcEEEeCCCcEEEEeEeccC-CCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGS-PKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~  128 (163)
                      ....+.+|+++.|.|...+. ....+.|++.
T Consensus         6 ~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq   36 (115)
T d2atpb1           6 SSLLVQTNHTAKMSCEVKSISKLTSIYWLRE   36 (115)
T ss_dssp             SEEEECTTSCEEEEEECCSSCCSSEEEEEEE
T ss_pred             CcEEEcCCCCEEEEEEEeCCCCCCceEEEEe
Confidence            35678899999999998763 4557999874

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.095  Score=29.65  Aligned_cols=58  Identities=14%  Similarity=0.220  Sum_probs=35.0

Q ss_pred             CcEEEeCCCcEEEEeEeccC----C---CCeEEEEECCeEEE------ecC-----------CceE------EeceEEEE
Q psy16425         99 TDMVIREGSNVTLKCAASGS----P---KPNITWRREGGELI------AQG-----------NGQE------DFPFFKRT  148 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~----p---~p~v~W~~~~~~~~------~~~-----------~~~~------~~~~l~i~  148 (163)
                      ..+++.+|++|.|.|.....    .   ...+.|++......      ...           +...      ....|+|.
T Consensus         9 ~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   88 (121)
T d2g5ra1           9 SSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIR   88 (121)
T ss_dssp             SEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             CEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEEC
Confidence            36778899999999987421    1   13578987643211      000           0011      23479999


Q ss_pred             cchhhhHh
Q psy16425        149 KKKKKKKK  156 (163)
Q Consensus       149 ~v~~~~~~  156 (163)
                      +|..+|++
T Consensus        89 ~v~~~DsG   96 (121)
T d2g5ra1          89 DARMSDAG   96 (121)
T ss_dssp             SCCGGGCE
T ss_pred             CCChHHCE
Confidence            99999876

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.054  Score=29.93  Aligned_cols=58  Identities=14%  Similarity=0.175  Sum_probs=38.1

Q ss_pred             cEEEeCCCcEEEEeEeccCC----CCeEEEEECCeEEEecCCceE---------------EeceEEEEcchhhhHhh
Q psy16425        100 DMVIREGSNVTLKCAASGSP----KPNITWRREGGELIAQGNGQE---------------DFPFFKRTKKKKKKKKK  157 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p----~p~v~W~~~~~~~~~~~~~~~---------------~~~~l~i~~v~~~~~~~  157 (163)
                      .++...|+++.|.|......    .-.+.|.+++..+........               +...|+|.+++.+|.+.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~   79 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGT   79 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeE
Confidence            35677899999999765322    235888888766432222211               23479999999998763

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=93.58  E-value=0.13  Score=29.22  Aligned_cols=64  Identities=19%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             eEEEeeeecc----CCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425          5 MLIEIGEMLM----AESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD   75 (163)
Q Consensus         5 ~~~~~~~~~~----~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   75 (163)
                      +.|.|...+.    ....|.|++ ++..+...  .......++.+....      .|.|..-.-.....|+|.+.+.
T Consensus        35 ~~L~C~v~gf~P~~~~v~v~W~~-~g~~~~~~~~~~~~~~~~gt~s~~S------~L~v~~~eW~~g~~ytC~V~H~  104 (119)
T d1igtb3          35 PIVTCVVVDVSEDDPDVQISWFV-NNVEVHTAQTQTHREDYNSTLRVVS------ALPIQHQDWMSGKEFKCKVNNK  104 (119)
T ss_dssp             CEEEEEEEEECTTCCCCEEEEEE-TTEECSSTTCBCCEEECSSSEEEEE------EEECCHHHHHTTCEEEEEEECT
T ss_pred             eEEEEEeecccCCCCcEEEEEee-CCcccCCCEECccEECCCCcEEEEE------EEEEeHHHhCCCCeEEEEEEEC
Confidence            4555555442    357889999 44433211  111122233333222      4555443333446799999654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.55  E-value=0.031  Score=31.36  Aligned_cols=29  Identities=24%  Similarity=0.505  Sum_probs=23.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|.........+.|++.
T Consensus        10 s~~~~~G~~vtl~C~~s~~~~~~~~WYrq   38 (107)
T d3cx5k1          10 SLAASLGDRVTISCRASQDINNFLNWYQQ   38 (107)
T ss_dssp             TCCBCSSSCCEEEEEESSCCTTCEEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCcCCCeEEEEc
Confidence            45677899999999987666667999964

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.028  Score=31.45  Aligned_cols=29  Identities=21%  Similarity=0.415  Sum_probs=23.1

Q ss_pred             CCCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425        105 EGSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      .++.++|.|.+.+ +|. ..+.|.+||..+.
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~   48 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLP   48 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECC
Confidence            3567999999987 553 5799999998764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.50  E-value=0.059  Score=30.47  Aligned_cols=30  Identities=30%  Similarity=0.587  Sum_probs=24.4

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         8 ~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ   37 (115)
T d1j8hd1           8 SHVSVSEGALVLLRCNYSSSVPPYLFWYVQ   37 (115)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCEEEEEEE
T ss_pred             CeEEEcCCCCEEEEEEeCCCCceeEEEEEc
Confidence            367788999999999987655667999973

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=93.48  E-value=0.17  Score=28.40  Aligned_cols=29  Identities=21%  Similarity=0.650  Sum_probs=22.5

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|..... ...+.|++.
T Consensus         9 ~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ   37 (113)
T d1h5ba_           9 SALSLHEGTDSALRCNFTTT-MRSVQWFRQ   37 (113)
T ss_dssp             SEEEEETTCCEEEEEEESSC-CSEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEEecC-CccceEEEe
Confidence            36678899999999997643 346899883

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.40  E-value=0.043  Score=30.93  Aligned_cols=29  Identities=34%  Similarity=0.510  Sum_probs=21.3

Q ss_pred             CcEEEeCCCcEEEEeEecc----CCCCeEEEEE
Q psy16425         99 TDMVIREGSNVTLKCAASG----SPKPNITWRR  127 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~----~p~p~v~W~~  127 (163)
                      .......|++++|.|....    .....+.|++
T Consensus         7 ~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~   39 (119)
T d1neua_           7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRY   39 (119)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCCSCCEEEEEE
T ss_pred             CeEEEeeCCCEEEEEEEEecCCCCccEEEEEEE
Confidence            3567888999999998642    2234799986

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.34  E-value=0.017  Score=33.61  Aligned_cols=29  Identities=31%  Similarity=0.650  Sum_probs=22.6

Q ss_pred             CCCcEEEEeEecc-CCCC-eEEEEECCeEEE
Q psy16425        105 EGSNVTLKCAASG-SPKP-NITWRREGGELI  133 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~  133 (163)
                      .+..+.|.|.+.+ +|.. .|.|+++|..+.
T Consensus        19 ~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~   49 (127)
T d1ogae2          19 HTQKATLVCLATGFYPDHVELSWWVNGKEVH   49 (127)
T ss_dssp             HHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             cCCcEEEEEEEEeccCCCeEEEEEECCEEcc
Confidence            3567899999988 4543 699999998763

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=93.21  E-value=0.045  Score=30.20  Aligned_cols=55  Identities=16%  Similarity=0.087  Sum_probs=33.3

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc-eE--EeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG-QE--DFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~-~~--~~~~l~i~~v~~~~~~  156 (163)
                      ..+..|.+|+|.|.... +...+.|+++|......... ..  ....+.|..++..|++
T Consensus        15 ~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G   72 (99)
T d1nkra2          15 PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGG   72 (99)
T ss_dssp             SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCE
T ss_pred             CcccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCE
Confidence            45788999999998753 45679999987542111111 11  1233566666666654

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.09  E-value=0.11  Score=29.15  Aligned_cols=29  Identities=31%  Similarity=0.468  Sum_probs=22.7

Q ss_pred             cEEEeCCCcEEEEeEeccCC-CCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSP-KPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p-~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|...+.. ...+.|++.
T Consensus         7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ   36 (112)
T d1kgcd1           7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQ   36 (112)
T ss_dssp             EEEEETTSCEEEEEEESCCCTTCCEEEEEE
T ss_pred             EEEECCCCCEEEEEEEeCCCccccEEEEEE
Confidence            56788999999999976543 345899984

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.045  Score=30.52  Aligned_cols=29  Identities=17%  Similarity=0.359  Sum_probs=20.9

Q ss_pred             cEEEeCCCcEEEEeEeccC--CCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGS--PKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~--p~p~v~W~~~  128 (163)
                      .+...+|+++.|.|.....  ....+.|++.
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~   35 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKE   35 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEe
Confidence            4667899999999986532  2345789873

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=93.05  E-value=0.03  Score=32.05  Aligned_cols=31  Identities=13%  Similarity=0.209  Sum_probs=23.7

Q ss_pred             eCCCcEEEEeEeccC-CC---CeEEEEECCeEEEe
Q psy16425        104 REGSNVTLKCAASGS-PK---PNITWRREGGELIA  134 (163)
Q Consensus       104 ~~g~~~~l~C~~~~~-p~---p~v~W~~~~~~~~~  134 (163)
                      ..++.+.|.|.+.++ |.   ..++|..++..+..
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~   64 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHT   64 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSS
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCC
Confidence            347789999999874 53   46889999987643

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=92.97  E-value=0.035  Score=30.66  Aligned_cols=27  Identities=26%  Similarity=0.598  Sum_probs=20.7

Q ss_pred             CCcEEEEeEeccC-CCC-eEEEEECCeEE
Q psy16425        106 GSNVTLKCAASGS-PKP-NITWRREGGEL  132 (163)
Q Consensus       106 g~~~~l~C~~~~~-p~p-~v~W~~~~~~~  132 (163)
                      ...++|.|.+.|+ |.. .|.|.+|+..+
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~   42 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGG   42 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSS
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccc
Confidence            4578999999985 543 69999987653

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=92.95  E-value=0.097  Score=29.36  Aligned_cols=29  Identities=24%  Similarity=0.554  Sum_probs=23.2

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ...+.+|++++|.|.....-...+.|++.
T Consensus        10 ~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ   38 (112)
T d1fo0b_          10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQ   38 (112)
T ss_dssp             EEECCTTCCEEEEEEESCTTCCEEEEEEE
T ss_pred             eEEECCCCCEEEEEEEecCCCCcEEEEeE
Confidence            56678899999999976554567999985

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=92.87  E-value=0.085  Score=29.75  Aligned_cols=28  Identities=29%  Similarity=0.617  Sum_probs=23.5

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEE
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRR  127 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~  127 (163)
                      .+.+.+|++++|.|.......+.+.|++
T Consensus         9 ~v~v~~G~svtl~C~~~~~~~~~~~Wyr   36 (115)
T d1i9ea_           9 RVTVSEGASLQLRCKYSYSATPYLFWYV   36 (115)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             eEEECCCCCEEEEEEEcCCCCCCEEEEE
Confidence            5778899999999998766567788997

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=92.87  E-value=0.12  Score=29.26  Aligned_cols=29  Identities=21%  Similarity=0.494  Sum_probs=23.1

Q ss_pred             cEEEeCCCcEEEEeEeccC--CCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGS--PKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~--p~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|...+.  ....+.|++.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ   39 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQ   39 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEEC
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceee
Confidence            5778899999999998653  3457999974

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=92.86  E-value=0.034  Score=31.14  Aligned_cols=30  Identities=17%  Similarity=0.296  Sum_probs=23.1

Q ss_pred             EeCCCcEEEEeEecc-CCCC-eEEEEECCeEE
Q psy16425        103 IREGSNVTLKCAASG-SPKP-NITWRREGGEL  132 (163)
Q Consensus       103 ~~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~  132 (163)
                      +..+..+.|.|.+.+ +|.. .+.|.++|..+
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~   52 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNT   52 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCC
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEc
Confidence            445678999999988 4543 69999998755

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.083  Score=29.12  Aligned_cols=28  Identities=25%  Similarity=0.564  Sum_probs=22.3

Q ss_pred             CCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425        106 GSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus       106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      ++.+.|.|.+.| +|. ..++|.++|....
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~   48 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWESNGQPEN   48 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEECC
Confidence            567899999998 454 4799999998753

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=92.71  E-value=0.1  Score=29.79  Aligned_cols=29  Identities=28%  Similarity=0.587  Sum_probs=23.1

Q ss_pred             CcEEEeCCCcEEEEeEeccCC--CCeEEEEE
Q psy16425         99 TDMVIREGSNVTLKCAASGSP--KPNITWRR  127 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p--~p~v~W~~  127 (163)
                      ..+.+.+|++++|.|...+..  ...+.|++
T Consensus         9 ~sv~v~~G~~vtL~C~~s~~~~~~~~~~Wyr   39 (120)
T d1hxma1           9 QTVPVSIGVPATLRCSMKGEAIGNYYINWYR   39 (120)
T ss_dssp             SEEEEETTCCEEEEEEECSSCGGGSEEEEEE
T ss_pred             CCEEECCCCCEEEEEEEeccCccCCcCeEEE
Confidence            467788999999999987643  34689987

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=92.52  E-value=0.068  Score=30.04  Aligned_cols=29  Identities=10%  Similarity=0.485  Sum_probs=22.8

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|.........+.|++.
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ   37 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQ   37 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeec
Confidence            57788999999999976544456899864

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=92.51  E-value=0.072  Score=29.41  Aligned_cols=28  Identities=25%  Similarity=0.552  Sum_probs=22.1

Q ss_pred             CCCcEEEEeEecc-CCC-CeEEEEECCeEE
Q psy16425        105 EGSNVTLKCAASG-SPK-PNITWRREGGEL  132 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~  132 (163)
                      .++.+.|.|.+.| +|. ..+.|.++|...
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~   47 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTE   47 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEc
Confidence            3667899999988 464 479999998763

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=92.39  E-value=0.14  Score=28.74  Aligned_cols=30  Identities=20%  Similarity=0.478  Sum_probs=22.4

Q ss_pred             CcEEEeCCCcEEEEeEeccC-----CCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGS-----PKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~-----p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|...+.     ....+.|++.
T Consensus         9 ~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq   43 (112)
T d1mjul1           9 PSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQ   43 (112)
T ss_dssp             SEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCCCceeEEEEC
Confidence            46778899999999987652     1345889864

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=92.36  E-value=0.1  Score=29.13  Aligned_cols=30  Identities=27%  Similarity=0.457  Sum_probs=23.0

Q ss_pred             CcEEEeCCCcEEEEeEeccC-CCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGS-PKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~  128 (163)
                      +++.+.+|++++|.|..... ....+.|++.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq   36 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQ   36 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEE
Confidence            36788899999999987643 3446889973

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.12  Score=28.47  Aligned_cols=28  Identities=21%  Similarity=0.571  Sum_probs=22.1

Q ss_pred             CCcEEEEeEeccC-CC-CeEEEEECCeEEE
Q psy16425        106 GSNVTLKCAASGS-PK-PNITWRREGGELI  133 (163)
Q Consensus       106 g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~  133 (163)
                      ++.+.|.|.+.++ |. ..|.|.++|..+.
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~   49 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVT   49 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECC
Confidence            5678999999874 54 4799999998763

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.1  Score=28.63  Aligned_cols=55  Identities=20%  Similarity=0.275  Sum_probs=32.8

Q ss_pred             EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec--CCce----EEeceEEEEcchhhhHh
Q psy16425        101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ--GNGQ----EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~--~~~~----~~~~~l~i~~v~~~~~~  156 (163)
                      ..+..|.+|+|.|.... +...+..++++......  ....    .....|.|.+|+.+|++
T Consensus        13 ~~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G   73 (98)
T d1ugna2          13 PVVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRW   73 (98)
T ss_dssp             SEEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCE
T ss_pred             CccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCe
Confidence            35788999999999743 34567777777642111  0111    12346999999988875

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=92.16  E-value=0.11  Score=29.31  Aligned_cols=29  Identities=31%  Similarity=0.662  Sum_probs=23.1

Q ss_pred             CcEEEeCCCcEEEEeEecc-CCCCeEEEEE
Q psy16425         99 TDMVIREGSNVTLKCAASG-SPKPNITWRR  127 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~  127 (163)
                      ..+.+.+|++++|.|.... .....+.|++
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyr   37 (116)
T d1tvda_           8 PDQTVASGSEVVLLCTYDTVYSNPDLFWYR   37 (116)
T ss_dssp             CCEEEETTCCEEECCEEECCSSSCCEEEEE
T ss_pred             CCEEEcCCCCEEEEEEEcCCccCCcEEEEE
Confidence            4677889999999998754 3456799987

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.80  E-value=0.2  Score=28.08  Aligned_cols=30  Identities=27%  Similarity=0.521  Sum_probs=23.1

Q ss_pred             CcEEEeCCCcEEEEeEeccC-CCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGS-PKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~  128 (163)
                      ..+.+.+|+++.|.|...+. ....+.|++.
T Consensus         7 ~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq   37 (114)
T d3bp5a1           7 AWLTVSEGANATFTCSLSNWSEDLMLNWNRL   37 (114)
T ss_dssp             SEEEEETTCCEEEEEEESCCCTTCEEEEEEE
T ss_pred             CeEEECCCCCEEEEEEECCCCCcceEEEEEE
Confidence            36778999999999998643 3456889973

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=91.78  E-value=0.12  Score=28.92  Aligned_cols=30  Identities=23%  Similarity=0.470  Sum_probs=23.5

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.........+.|++.
T Consensus         8 ~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ   37 (110)
T d1ac6a_           8 GQVALSEEDFLTIHCNYSASGYPALFWYVQ   37 (110)
T ss_dssp             SEEEEETTEEEEECEEEECSSCCEEEEEEE
T ss_pred             CeEEECCCCCEEEEEEecCCCCcceEEEEc
Confidence            367788999999999876544557999973

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.77  E-value=0.14  Score=28.50  Aligned_cols=28  Identities=25%  Similarity=0.586  Sum_probs=22.2

Q ss_pred             CCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425        106 GSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus       106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      +..+.|.|.+.+ +|. ..|.|.+||..+.
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~   49 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSERQ   49 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEEcc
Confidence            567899999987 454 4799999988753

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=91.72  E-value=0.2  Score=27.84  Aligned_cols=28  Identities=32%  Similarity=0.642  Sum_probs=22.2

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ...+.+|++++|.|...+ ....+.|++.
T Consensus        10 ~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ   37 (110)
T d2aq2a1          10 NKVAVTGEKVTLSCQQTN-NHNNMYWYRQ   37 (110)
T ss_dssp             EEEECTTCCEEEEEEESS-CCSEEEEEEE
T ss_pred             eEEEcCCCCEEEEEEECC-CcCcEEEEEE
Confidence            567889999999998754 3457999983

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.092  Score=28.96  Aligned_cols=28  Identities=21%  Similarity=0.535  Sum_probs=22.3

Q ss_pred             CCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425        106 GSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus       106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      ++.+.|.|.+.+ +|. ..+.|.+||..+.
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~   49 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVK   49 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECC
Confidence            667899999998 453 3799999998764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.11  Score=28.69  Aligned_cols=57  Identities=14%  Similarity=0.163  Sum_probs=32.8

Q ss_pred             cEEEeCCCcEEEEeEeccCC---CCeEE--EEECCeEE-EecCCce-----------------EEeceEEEEcchhhhHh
Q psy16425        100 DMVIREGSNVTLKCAASGSP---KPNIT--WRREGGEL-IAQGNGQ-----------------EDFPFFKRTKKKKKKKK  156 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p---~p~v~--W~~~~~~~-~~~~~~~-----------------~~~~~l~i~~v~~~~~~  156 (163)
                      ......|+++.|.|.....+   ...+.  |.++.... .......                 .+...|+|.+|+.+|.+
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            34577899999999875322   22344  44443322 1110000                 02357999999999875

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=91.62  E-value=0.13  Score=28.55  Aligned_cols=30  Identities=27%  Similarity=0.530  Sum_probs=22.7

Q ss_pred             CcEEEeCCCcEEEEeEeccC-CCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGS-PKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|..... ....+.|++.
T Consensus         9 ~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq   39 (108)
T d2fx7l1           9 GTQSLSPGERATLSCRASQSVGNNKLAWYQQ   39 (108)
T ss_dssp             SEEEECTTCCEEEEEEESSCCGGGCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEeecCCCCccceeEec
Confidence            35678899999999987643 3446889975

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.51  E-value=0.072  Score=29.54  Aligned_cols=29  Identities=24%  Similarity=0.596  Sum_probs=23.2

Q ss_pred             CCcEEEEeEecc-CCC-CeEEEEECCeEEEe
Q psy16425        106 GSNVTLKCAASG-SPK-PNITWRREGGELIA  134 (163)
Q Consensus       106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~~  134 (163)
                      ++.+.|.|.+.+ +|. ..|.|.++|..+..
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~   50 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATIND   50 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCC
Confidence            567899999988 554 47999999988753

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=91.45  E-value=0.16  Score=28.45  Aligned_cols=30  Identities=20%  Similarity=0.449  Sum_probs=23.1

Q ss_pred             CcEEEeCCCcEEEEeEecc-CCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASG-SPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~  128 (163)
                      ..+.+.+|++|+|.|.... .....+.|++.
T Consensus         7 ~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ   37 (115)
T d1fo0a_           7 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQ   37 (115)
T ss_dssp             CEEEEETTCCEEECCEECCCCSSCEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEEcCCCCCCCCEEEEe
Confidence            4677899999999998653 34456889973

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.049  Score=30.27  Aligned_cols=31  Identities=13%  Similarity=0.281  Sum_probs=23.2

Q ss_pred             eCCCcEEEEeEeccC-CC---CeEEEEECCeEEEe
Q psy16425        104 REGSNVTLKCAASGS-PK---PNITWRREGGELIA  134 (163)
Q Consensus       104 ~~g~~~~l~C~~~~~-p~---p~v~W~~~~~~~~~  134 (163)
                      ..++.+.|.|.+.++ |.   ..+.|.+++..+..
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~   50 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN   50 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECC
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCC
Confidence            347789999999874 54   36789999887643

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.40  E-value=0.035  Score=30.87  Aligned_cols=30  Identities=17%  Similarity=0.345  Sum_probs=22.7

Q ss_pred             CCCcEEEEeEecc-CCC---CeEEEEECCeEEEe
Q psy16425        105 EGSNVTLKCAASG-SPK---PNITWRREGGELIA  134 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~---p~v~W~~~~~~~~~  134 (163)
                      .+..+.|.|.+.+ .|.   ..++|.++|..+..
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~   48 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHT   48 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECC
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccC
Confidence            4667899999987 454   37899999987643

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.37  E-value=0.1  Score=29.81  Aligned_cols=29  Identities=24%  Similarity=0.471  Sum_probs=22.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|...+.-...+.|++.
T Consensus        10 sv~~~~G~svtl~C~~s~~~~~~i~WYrQ   38 (119)
T d1f3rb2          10 LLSASVGDRVTLSCKGSQNINNYLAWYQQ   38 (119)
T ss_dssp             EECCCTTCCEEEEEECSSCCBTCEEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCCcceeEEeee
Confidence            55678899999999876654556999975

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.047  Score=30.76  Aligned_cols=58  Identities=16%  Similarity=0.245  Sum_probs=34.1

Q ss_pred             CcEEEeCCCcEEEEeEeccC---CCCeEEEEECCeE-----EEecCCce---------E------EeceEEEEcchhhhH
Q psy16425         99 TDMVIREGSNVTLKCAASGS---PKPNITWRREGGE-----LIAQGNGQ---------E------DFPFFKRTKKKKKKK  155 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~---p~p~v~W~~~~~~-----~~~~~~~~---------~------~~~~l~i~~v~~~~~  155 (163)
                      ..+...+|++++|.|.-...   ....+.|++....     +.......         .      ....|+|.+++.+|+
T Consensus         7 ~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~Ds   86 (116)
T d1xeda_           7 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDS   86 (116)
T ss_dssp             SEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCC
Confidence            36778899999999986432   1234789874311     11111000         0      124688999999887


Q ss_pred             h
Q psy16425        156 K  156 (163)
Q Consensus       156 ~  156 (163)
                      +
T Consensus        87 G   87 (116)
T d1xeda_          87 G   87 (116)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.11  Score=29.20  Aligned_cols=29  Identities=31%  Similarity=0.495  Sum_probs=22.2

Q ss_pred             cEEEeCCCcEEEEeEeccC-CCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGS-PKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~  128 (163)
                      ..++.+|++++|.|..... ....+.|++.
T Consensus         9 ~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ   38 (114)
T d1akjd_           9 DRTWNLGETVELKCQVLLSNPTSGCSWLFQ   38 (114)
T ss_dssp             SCCCCTTCCEEEEEEECCSSCCSCEEEEEE
T ss_pred             cEeccCCCcEEEEEEeCCCcCCCCEEEEEE
Confidence            4567789999999997653 3456899984

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=91.28  E-value=0.24  Score=28.26  Aligned_cols=29  Identities=24%  Similarity=0.477  Sum_probs=22.5

Q ss_pred             cEEEeCCCcEEEEeEeccCC--CCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSP--KPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~  128 (163)
                      .+...+|++++|.|.+.|..  ...+.|++.
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ   40 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRE   40 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEE
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEE
Confidence            56677899999999998743  345889874

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.16  E-value=0.15  Score=28.01  Aligned_cols=27  Identities=22%  Similarity=0.529  Sum_probs=21.4

Q ss_pred             CCcEEEEeEecc-CCC-CeEEEEECCeEE
Q psy16425        106 GSNVTLKCAASG-SPK-PNITWRREGGEL  132 (163)
Q Consensus       106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~  132 (163)
                      .+.+.|.|.+.+ +|. ..+.|.++|..+
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~   46 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPA   46 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEc
Confidence            456899999998 463 479999999865

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.15  Score=28.27  Aligned_cols=29  Identities=24%  Similarity=0.531  Sum_probs=22.2

Q ss_pred             CCCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425        105 EGSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      ..+.+.|.|.+.| +|. ..|+|.+++....
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~   50 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYKNNSDI   50 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEETTSCEE
T ss_pred             CCCceEEEEEEecccCCcEEEEEEECCcccc
Confidence            3567899999998 564 4799999987653

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.15  E-value=0.086  Score=28.65  Aligned_cols=28  Identities=32%  Similarity=0.755  Sum_probs=21.7

Q ss_pred             CCCcEEEEeEeccCCCCeEEEEECCeEEEe
Q psy16425        105 EGSNVTLKCAASGSPKPNITWRREGGELIA  134 (163)
Q Consensus       105 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~  134 (163)
                      -|-+|.|+|+..+.  ..|.|.+++..+..
T Consensus        13 SGTtV~LTCP~~~~--~~I~Wkkn~~~i~g   40 (100)
T d1jbja2          13 SGTSVELTCPLDSD--ENLKWEKNGQELPQ   40 (100)
T ss_dssp             ETTEEEEECSSCCC--TTCEEEETTEEECS
T ss_pred             eCCEEEEECCCCCC--CceEEeeccccCCC
Confidence            48899999997643  46999999877643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.88  E-value=0.16  Score=28.06  Aligned_cols=57  Identities=16%  Similarity=0.179  Sum_probs=34.0

Q ss_pred             cEEEeCCCcEEEEeEecc---CC---CCeEEEEECCe----EEEecCCc-----------e------EEeceEEEEcchh
Q psy16425        100 DMVIREGSNVTLKCAASG---SP---KPNITWRREGG----ELIAQGNG-----------Q------EDFPFFKRTKKKK  152 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~---~p---~p~v~W~~~~~----~~~~~~~~-----------~------~~~~~l~i~~v~~  152 (163)
                      .+.+.+|+.|.|.|....   .+   ...+.|++...    .+......           .      .....|+|.+|..
T Consensus         9 ~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   88 (118)
T d1qfoa_           9 NVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKP   88 (118)
T ss_dssp             EEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCG
T ss_pred             EEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCCh
Confidence            567889999999998642   12   12466776421    11111100           0      0234699999999


Q ss_pred             hhHh
Q psy16425        153 KKKK  156 (163)
Q Consensus       153 ~~~~  156 (163)
                      +|++
T Consensus        89 ~DsG   92 (118)
T d1qfoa_          89 EDSG   92 (118)
T ss_dssp             GGCE
T ss_pred             hHCE
Confidence            9875

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.72  E-value=0.25  Score=28.03  Aligned_cols=29  Identities=21%  Similarity=0.552  Sum_probs=22.6

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      ...+.+|++++|.|.+.|+.-.  .+.|++.
T Consensus         8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ   38 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVKQ   38 (117)
T ss_dssp             CEEECTTCCEEEEEEESSCCCSCCEEEEEEE
T ss_pred             CceECCCCCEEEEEEEccccCCCCcCcccee
Confidence            4567789999999999986543  5888764

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.69  E-value=0.17  Score=28.08  Aligned_cols=28  Identities=11%  Similarity=0.457  Sum_probs=22.1

Q ss_pred             CCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425        106 GSNVTLKCAASG-SPK-PNITWRREGGELI  133 (163)
Q Consensus       106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~  133 (163)
                      .+.+.|.|.+.+ +|. ..|.|.+||....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~   49 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQS   49 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECC
Confidence            567899999987 464 4799999997653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=90.62  E-value=0.18  Score=28.21  Aligned_cols=29  Identities=28%  Similarity=0.558  Sum_probs=21.8

Q ss_pred             cEEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|..-  -.+.|.+.
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ   39 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQ   39 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCeECCCCCeEEEEEECCCccccccccccee
Confidence            456778999999999998543  35778763

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.15  Score=28.03  Aligned_cols=26  Identities=19%  Similarity=0.532  Sum_probs=19.6

Q ss_pred             CCcEEEEeEeccC-CC-CeEEEEECCeE
Q psy16425        106 GSNVTLKCAASGS-PK-PNITWRREGGE  131 (163)
Q Consensus       106 g~~~~l~C~~~~~-p~-p~v~W~~~~~~  131 (163)
                      ++.+.|.|.+.++ |. ..|+|..++..
T Consensus        20 ~~~~tl~Cl~~~f~P~~i~v~W~~~~~~   47 (103)
T d1c5ch2          20 GGTAALGCLVKDYFPEPVTVSWNSGALT   47 (103)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CCeEEEEEEEEeEeCCCeEEEECcCCCC
Confidence            5679999999874 53 36999877643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.48  E-value=0.2  Score=28.01  Aligned_cols=28  Identities=25%  Similarity=0.497  Sum_probs=21.2

Q ss_pred             cEEEeCCCcEEEEeEeccCCC---CeEEEEE
Q psy16425        100 DMVIREGSNVTLKCAASGSPK---PNITWRR  127 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~---p~v~W~~  127 (163)
                      .+.+.+|++++|.|...+...   -.+.|++
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~Wyr   39 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQ   39 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEE
Confidence            567889999999999875322   2388986

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.33  E-value=0.088  Score=29.44  Aligned_cols=29  Identities=21%  Similarity=0.487  Sum_probs=22.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|.........+.|++.
T Consensus         8 s~~~~~G~svtl~C~~~~~~~~~i~WYrQ   36 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPKNFAYWFQQ   36 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEE
T ss_pred             eeEECCCCCEEEEEECCCCCCccEEEEec
Confidence            56788999999999876544456889873

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=90.26  E-value=0.28  Score=27.87  Aligned_cols=28  Identities=32%  Similarity=0.678  Sum_probs=21.7

Q ss_pred             EEEeCCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      ..+.+|+++.|.|.+.|....  .+.|++.
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ   38 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRR   38 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeee
Confidence            457789999999999986533  4778875

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=90.25  E-value=0.24  Score=28.21  Aligned_cols=28  Identities=21%  Similarity=0.535  Sum_probs=21.5

Q ss_pred             EEEeCCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      ..+.+|+++.|.|.+.|....  .+.|++.
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ   39 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQ   39 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEE
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeE
Confidence            356779999999999986543  4778764

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=90.24  E-value=0.25  Score=27.56  Aligned_cols=29  Identities=24%  Similarity=0.623  Sum_probs=22.4

Q ss_pred             cEEEeCCCcEEEEeEeccC--CCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGS--PKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~--p~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|...+.  ....+.|++.
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq   39 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQ   39 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceee
Confidence            6788899999999987643  2345999964

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=90.15  E-value=0.33  Score=27.06  Aligned_cols=30  Identities=23%  Similarity=0.542  Sum_probs=21.9

Q ss_pred             CcEEEeCCCcEEEEeEeccC----CCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGS----PKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~----p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.....    ....+.|++.
T Consensus         9 ~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ   42 (111)
T d2gsia1           9 ASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQ   42 (111)
T ss_dssp             SEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCccceEEEEE
Confidence            35678899999999987532    1234899874

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=89.69  E-value=0.28  Score=27.35  Aligned_cols=30  Identities=23%  Similarity=0.503  Sum_probs=22.5

Q ss_pred             CcEEEeCCCcEEEEeEecc-CCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASG-SPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~  128 (163)
                      ..+.+.+|++|+|.|.... .....+.|++.
T Consensus         8 ~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq   38 (114)
T d2ak4d1           8 TEISVVEKEDVTLDCVYETRDTTYYLFWYKQ   38 (114)
T ss_dssp             CEEEEETTCCEEECCEEECSCSSCEEEEEEE
T ss_pred             CeEEEeCCCCEEEEEEEcCCCcCccEEEEEc
Confidence            3667899999999998653 33456889973

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=89.60  E-value=0.34  Score=26.98  Aligned_cols=29  Identities=17%  Similarity=0.460  Sum_probs=22.5

Q ss_pred             cEEEeCCCcEEEEeEeccC---CCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGS---PKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~---p~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|...+.   ....+.|++.
T Consensus         9 s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ   40 (112)
T d1lgva1           9 SVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQ   40 (112)
T ss_dssp             EEEECTTCCEEEEEECCCCSSSCCCCEEEEEE
T ss_pred             cEEECCCCCEEEEEEeCCCCCCCCCcceeeee
Confidence            6778899999999997653   2345899974

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.52  E-value=0.25  Score=28.04  Aligned_cols=29  Identities=28%  Similarity=0.570  Sum_probs=21.6

Q ss_pred             cEEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|+..  -.+.|++.
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ   39 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQ   39 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEE
Confidence            345678999999999998643  34778763

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.51  E-value=0.21  Score=27.83  Aligned_cols=29  Identities=21%  Similarity=0.504  Sum_probs=22.2

Q ss_pred             cEEEeCCCcEEEEeEeccCC--CCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSP--KPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~  128 (163)
                      .+.+.+|++++|.|...+..  ...+.|++.
T Consensus         9 s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ   39 (111)
T d1cd0a_           9 SVSESPGKTVTISCTRSSGNIDSNYVQWYQQ   39 (111)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEEE
T ss_pred             eeEECCCCCEEEEEEECCCCccCceEEEeee
Confidence            57788999999999986543  234889874

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.48  E-value=0.27  Score=27.89  Aligned_cols=28  Identities=25%  Similarity=0.682  Sum_probs=21.4

Q ss_pred             EEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ..+.+|++++|.|.+.|...  -.+.|++.
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ   39 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQ   39 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccC
Confidence            35678999999999998643  35778764

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.43  E-value=0.17  Score=27.83  Aligned_cols=27  Identities=26%  Similarity=0.574  Sum_probs=21.2

Q ss_pred             CCcEEEEeEeccC-CC-CeEEEEECCeEE
Q psy16425        106 GSNVTLKCAASGS-PK-PNITWRREGGEL  132 (163)
Q Consensus       106 g~~~~l~C~~~~~-p~-p~v~W~~~~~~~  132 (163)
                      .+.+.|.|.+.++ |. ..+.|.++|...
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~   47 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQ   47 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeec
Confidence            4568999999874 54 479999999864

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=89.17  E-value=0.25  Score=27.91  Aligned_cols=28  Identities=32%  Similarity=0.692  Sum_probs=21.3

Q ss_pred             EEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ..+.+|+++.|.|.+.|..-  -.+.|++.
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ   39 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQ   39 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceECCCCCEEEEEEECccCccCCceecccc
Confidence            45678999999999998643  35778764

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=89.16  E-value=0.3  Score=27.25  Aligned_cols=30  Identities=20%  Similarity=0.467  Sum_probs=21.4

Q ss_pred             CcEEEeCCCcEEEEeEeccC----CCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGS----PKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~----p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.....    ....+.|++.
T Consensus         9 ~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq   42 (111)
T d1j05a_           9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (111)
T ss_dssp             SEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEeccCCccCCceeEEEEEc
Confidence            35667889999999987431    2234899974

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=89.03  E-value=0.32  Score=27.51  Aligned_cols=28  Identities=29%  Similarity=0.578  Sum_probs=21.2

Q ss_pred             EEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ..+.+|+++.|.|.+.|..-  -.+.|++.
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQ   39 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEE
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceE
Confidence            35677999999999998643  35778764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=89.02  E-value=0.37  Score=26.92  Aligned_cols=30  Identities=17%  Similarity=0.424  Sum_probs=22.0

Q ss_pred             CcEEEeCCCcEEEEeEeccCC-----CCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSP-----KPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p-----~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|...+..     ...+.|++.
T Consensus         9 ~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   43 (112)
T d1ncwl1           9 KTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQ   43 (112)
T ss_dssp             SEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECcccccCCCCcccEEEEc
Confidence            367788999999999875422     234889864

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=88.88  E-value=0.35  Score=27.54  Aligned_cols=28  Identities=29%  Similarity=0.655  Sum_probs=21.1

Q ss_pred             EEEeCCCcEEEEeEeccCC--CCeEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSP--KPNITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p--~p~v~W~~~  128 (163)
                      ..+.+|+++.|.|.+.|..  .-.+.|++.
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ   39 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQ   39 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEE
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeee
Confidence            3467799999999999864  335788763

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.86  E-value=0.57  Score=24.91  Aligned_cols=31  Identities=19%  Similarity=0.499  Sum_probs=25.3

Q ss_pred             CcEEEeCCCcEEEEeEecc-CCCCeEEEEECC
Q psy16425         99 TDMVIREGSNVTLKCAASG-SPKPNITWRREG  129 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~  129 (163)
                      ....+..|+.+.|.|++.- ...|.++|-+-+
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKln   42 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHN   42 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEEC
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeC
Confidence            3567889999999999974 568999998744

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=88.82  E-value=0.43  Score=26.52  Aligned_cols=27  Identities=22%  Similarity=0.614  Sum_probs=21.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEE
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRR  127 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~  127 (163)
                      ...+.+|++++|.|...+. ...+.|++
T Consensus         8 ~~~~~~G~svtl~C~~~~~-~~~~~WYr   34 (113)
T d2ntsp1           8 YLIKTRGQQVTLSCSPISG-HRSVSWYQ   34 (113)
T ss_dssp             EEEEETTCCEEEEEECSTT-CCEEEEEE
T ss_pred             eEEECCCCCEEEEEEECCC-CCEEEEEE
Confidence            5678899999999986542 35789997

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=88.63  E-value=0.4  Score=26.84  Aligned_cols=29  Identities=31%  Similarity=0.627  Sum_probs=22.4

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ....+.+|++++|.|...+. ...+.|++.
T Consensus         8 ~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ   36 (115)
T d1ogad1           8 QFLSIQEGENLTVYCNSSSV-FSSLQWYRQ   36 (115)
T ss_dssp             SEEEEETTCCEEEEEECSSC-CSCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEECCC-CceEEEEec
Confidence            35778899999999997653 346889873

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.60  E-value=0.4  Score=27.10  Aligned_cols=28  Identities=32%  Similarity=0.644  Sum_probs=21.8

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC--eEEEEE
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP--NITWRR  127 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p--~v~W~~  127 (163)
                      ...+.+|+++.|.|.+.|....  .+.|.+
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~~~~~WvR   38 (116)
T d1mjuh1           9 AELVKPGASVKLSCKASGYTFTNYWINWVK   38 (116)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CcEECCCCCEEEEEEEccCccccCceEeee
Confidence            4567889999999999986533  477876

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=88.54  E-value=0.36  Score=27.63  Aligned_cols=28  Identities=39%  Similarity=0.739  Sum_probs=21.5

Q ss_pred             EEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ..+.+|+++.|.|.++|...  -.+.|.+.
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ   38 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQ   38 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCccccccccccccc
Confidence            45678999999999998643  35788874

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=88.46  E-value=0.39  Score=26.80  Aligned_cols=28  Identities=18%  Similarity=0.589  Sum_probs=21.6

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ...+.+|++++|.|..... ...+.|++.
T Consensus        10 ~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ   37 (113)
T d1nfdb1          10 HIIKEKGGRSVLTCIPISG-HSNVVWYQQ   37 (113)
T ss_dssp             EEEEETTCCCEEEEECCTT-CCEEEEEEB
T ss_pred             EEEEeCCCCEEEEEEeCCC-CCEEEEEEE
Confidence            5678899999999986432 346899975

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.45  E-value=0.32  Score=27.62  Aligned_cols=29  Identities=28%  Similarity=0.654  Sum_probs=21.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|+..  -.+.|++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQ   39 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCcccee
Confidence            345678999999999998643  35788864

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.44  E-value=0.32  Score=27.45  Aligned_cols=28  Identities=32%  Similarity=0.731  Sum_probs=21.0

Q ss_pred             EEEeCCCcEEEEeEeccCC--CCeEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSP--KPNITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p--~p~v~W~~~  128 (163)
                      ..+.+|++++|.|.+.|..  .-.+.|++.
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ   39 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQ   39 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEE
Confidence            4577899999999998753  335778763

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=88.34  E-value=0.39  Score=26.78  Aligned_cols=29  Identities=31%  Similarity=0.582  Sum_probs=22.4

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.... ....+.|++.
T Consensus         7 ~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ   35 (114)
T d1ogae1           7 KYLFRKEGQNVTLSCEQNL-NHDAMYWYRQ   35 (114)
T ss_dssp             SEEEEETTCCEEECCEECS-CCSEEEEEEE
T ss_pred             CeEEEcCCCCEEEEEEEec-CCCcEEEEee
Confidence            3577889999999999753 3457899974

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.33  E-value=0.34  Score=27.63  Aligned_cols=29  Identities=31%  Similarity=0.625  Sum_probs=22.4

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|....  .+.|++.
T Consensus        10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ   40 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQ   40 (122)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSEEEEEEE
T ss_pred             CcEECCCCCEEEEEEEcCCCccCCCceeeEe
Confidence            4567889999999999986533  4778764

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=88.21  E-value=0.51  Score=26.86  Aligned_cols=28  Identities=32%  Similarity=0.628  Sum_probs=21.3

Q ss_pred             EEEeCCCcEEEEeEeccCC--CCeEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSP--KPNITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p--~p~v~W~~~  128 (163)
                      ..+.+|+++.|.|.+.|..  .-.+.|.+.
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ   39 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQ   39 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccC
Confidence            4577899999999998754  335778764

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.18  E-value=0.4  Score=27.13  Aligned_cols=28  Identities=32%  Similarity=0.625  Sum_probs=21.3

Q ss_pred             EEEeCCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      ..+.+|+++.|.|.++|..-.  .+.|++.
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ   39 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQ   39 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeee
Confidence            456779999999999986433  5778763

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.14  E-value=0.35  Score=27.36  Aligned_cols=29  Identities=31%  Similarity=0.595  Sum_probs=22.0

Q ss_pred             cEEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|..-  -.+.|.+.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQ   39 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccee
Confidence            346778999999999998653  35778764

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.13  E-value=0.021  Score=31.69  Aligned_cols=23  Identities=13%  Similarity=0.095  Sum_probs=14.2

Q ss_pred             eeEEEeeeecc--C-CCEEEEEEcCC
Q psy16425          4 RMLIEIGEMLM--A-ESTVAWLRVDT   26 (163)
Q Consensus         4 ~~~~~~~~~~~--~-~~~i~W~k~~~   26 (163)
                      .+.|.|...+.  | ...|.|++.++
T Consensus        20 ~~tL~C~v~~f~~p~~i~v~W~~~~~   45 (101)
T d1ow0a1          20 EANLTCTLTGLRDASGVTFTWTPSSG   45 (101)
T ss_dssp             SCCCEEEETTCCSCCCCCCCBSSCSS
T ss_pred             CeEEEEEEeCCCCCcceEEEEEECCc
Confidence            35566666543  3 46899998544

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=88.08  E-value=0.4  Score=27.09  Aligned_cols=28  Identities=18%  Similarity=0.563  Sum_probs=21.0

Q ss_pred             EEEeCCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      ..+.+|+++.|.|.+.|..-.  .+.|++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ   39 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQ   39 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceE
Confidence            356779999999999986433  4778764

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.07  E-value=0.37  Score=27.34  Aligned_cols=29  Identities=24%  Similarity=0.612  Sum_probs=21.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|...-  .+.|.+.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ   39 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHWVKQ   39 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccee
Confidence            4457789999999999986533  4778763

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=87.85  E-value=0.44  Score=26.98  Aligned_cols=28  Identities=32%  Similarity=0.693  Sum_probs=21.3

Q ss_pred             EEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ..+.+|+++.|.|.+.|..-  -.+.|.+.
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ   39 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQ   39 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEE
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccC
Confidence            34677999999999998643  35778764

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=87.74  E-value=0.39  Score=27.24  Aligned_cols=29  Identities=24%  Similarity=0.502  Sum_probs=21.7

Q ss_pred             cEEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|..-  -.+.|.+.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ   39 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQ   39 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceecccc
Confidence            345778999999999998543  35778764

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=87.55  E-value=0.39  Score=27.32  Aligned_cols=29  Identities=24%  Similarity=0.631  Sum_probs=21.6

Q ss_pred             cEEEeCCCcEEEEeEeccCC--CCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSP--KPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ   39 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQ   39 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeee
Confidence            34577899999999998754  335788764

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.54  E-value=0.28  Score=26.90  Aligned_cols=29  Identities=24%  Similarity=0.613  Sum_probs=21.3

Q ss_pred             CCCcEEEEeEecc-CCCC--eEEEEECCeEEE
Q psy16425        105 EGSNVTLKCAASG-SPKP--NITWRREGGELI  133 (163)
Q Consensus       105 ~g~~~~l~C~~~~-~p~p--~v~W~~~~~~~~  133 (163)
                      .++.+.|.|.+.+ +|+.  .+.|.+++..+.
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~   49 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDIT   49 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCE
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCc
Confidence            3678999999998 4653  477888776543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=87.52  E-value=0.66  Score=25.67  Aligned_cols=28  Identities=29%  Similarity=0.640  Sum_probs=21.5

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ...+.+|++++|.|..... ...+.|++.
T Consensus         8 ~~~~~~G~svtl~C~~s~~-~~~~~WYrQ   35 (112)
T d2bnub1           8 FQVLKTGQSMTLQCAQDMN-HEYMSWYRQ   35 (112)
T ss_dssp             EEEEETTCCEEEEEEESSC-CSEEEEEEE
T ss_pred             eEEECCCCCEEEEEEEECC-ccceEeccc
Confidence            4568899999999987532 456999873

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=87.47  E-value=0.64  Score=25.67  Aligned_cols=28  Identities=36%  Similarity=0.720  Sum_probs=21.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ...+.+|++++|.|...+. ...+.|++.
T Consensus         8 ~~~~~~G~svtl~C~~~~~-~~~~~WYrQ   35 (111)
T d2esve1           8 HSVIEKGQTVTLRCDPISG-HDNLYWYRR   35 (111)
T ss_dssp             EEEEETTCCEEEEEECCTT-CSEEEEEEE
T ss_pred             EEEECCCCCEEEEEEECCC-CceEEEEEE
Confidence            5678899999999985432 346889864

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=87.44  E-value=0.33  Score=27.96  Aligned_cols=28  Identities=32%  Similarity=0.636  Sum_probs=21.2

Q ss_pred             EEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ..+.+|+++.|.|.+.|..-  -.+.|++.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ   39 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQ   39 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeee
Confidence            45667999999999998643  35778864

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=87.42  E-value=0.34  Score=25.74  Aligned_cols=28  Identities=14%  Similarity=0.112  Sum_probs=20.9

Q ss_pred             CcEEEEeEeccC-CC-CeEEEEECCeEEEe
Q psy16425        107 SNVTLKCAASGS-PK-PNITWRREGGELIA  134 (163)
Q Consensus       107 ~~~~l~C~~~~~-p~-p~v~W~~~~~~~~~  134 (163)
                      +.+.|.|.+.++ |. ..+.|.++|.....
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~   43 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEF   43 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEEC
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccC
Confidence            456899999985 43 36899999876543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.40  E-value=0.41  Score=27.19  Aligned_cols=29  Identities=31%  Similarity=0.589  Sum_probs=21.9

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|..-.  .+.|++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQ   39 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcccc
Confidence            3456789999999999986433  5788764

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=87.37  E-value=0.68  Score=26.53  Aligned_cols=29  Identities=28%  Similarity=0.625  Sum_probs=21.1

Q ss_pred             cEEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|..-  -.+.|.+.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ   38 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQ   38 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEE
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeee
Confidence            456778999999999988543  34778764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=87.33  E-value=0.61  Score=25.98  Aligned_cols=30  Identities=13%  Similarity=0.407  Sum_probs=22.3

Q ss_pred             CcEEEeCCCcEEEEeEeccC-----CCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGS-----PKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~-----p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|...+.     ....+.|++.
T Consensus        10 ~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   44 (113)
T d1n4xl_          10 LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQ   44 (113)
T ss_dssp             SEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEeccccccCCCceEeEEEec
Confidence            35778899999999997542     2246889874

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.25  E-value=0.56  Score=27.04  Aligned_cols=29  Identities=34%  Similarity=0.611  Sum_probs=21.8

Q ss_pred             cEEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|..-  -.+.|.+.
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ   38 (130)
T d1rhhb1           8 AEVKKPGSSVQVSCKASGGTFSMYGFNWVRQ   38 (130)
T ss_dssp             CEEECTTCCEEEEEEETTSCCTTCEEEEEEE
T ss_pred             CceECCCCCeEEEEEEeCCCccCCCcceEEe
Confidence            345778999999999998643  34778763

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=87.23  E-value=0.47  Score=26.85  Aligned_cols=29  Identities=14%  Similarity=0.316  Sum_probs=21.9

Q ss_pred             cEEEeCCCcEEEEeEeccC--CCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGS--PKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~--p~p~v~W~~~  128 (163)
                      .+...+|++++|.|...+.  ....+.|++.
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ   40 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFRSVTIHWYRQ   40 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEE
T ss_pred             EEEecCCCcEEEEEEEecccccCCcccEEEe
Confidence            5667789999999987653  2456889873

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=87.20  E-value=0.56  Score=26.54  Aligned_cols=29  Identities=28%  Similarity=0.678  Sum_probs=21.5

Q ss_pred             cEEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|...  -.+.|.+.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQ   39 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEE
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEE
Confidence            456778999999999998542  35777763

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=87.12  E-value=0.44  Score=27.01  Aligned_cols=29  Identities=31%  Similarity=0.622  Sum_probs=21.7

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|..-.  .+.|.+.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ   39 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQ   39 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeee
Confidence            3467789999999999986433  4778753

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=87.11  E-value=0.71  Score=25.51  Aligned_cols=28  Identities=21%  Similarity=0.544  Sum_probs=21.3

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ...+.+|++++|.|.... ....+.|++.
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~i~WYrQ   35 (112)
T d1kgce1           8 YKVAKRGQDVALRCDPIS-GHVSLFWYQQ   35 (112)
T ss_dssp             EEEEETTCCEEEEEECCT-TCCEEEEEEE
T ss_pred             eEEECCCCCEEEEEEECC-CCCEEEeeee
Confidence            566889999999998643 3356889873

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=86.94  E-value=0.45  Score=27.16  Aligned_cols=28  Identities=32%  Similarity=0.584  Sum_probs=21.2

Q ss_pred             EEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ..+.+|+++.|.|.+.|..-  -.+.|++.
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ   39 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQ   39 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEcccc
Confidence            45678999999999998643  34788764

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=86.83  E-value=0.45  Score=27.08  Aligned_cols=29  Identities=28%  Similarity=0.648  Sum_probs=21.7

Q ss_pred             cEEEeCCCcEEEEeEeccCC--CCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSP--KPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~  128 (163)
                      ...+.+|++++|.|.+.|..  .-.+.|++.
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ   39 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQ   39 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeE
Confidence            45577899999999998754  335778764

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.77  E-value=0.38  Score=26.57  Aligned_cols=24  Identities=33%  Similarity=0.670  Sum_probs=18.5

Q ss_pred             CCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        105 EGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       105 ~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      +|++++|.|.++|....  .+.|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ   26 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQ   26 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEe
Confidence            48999999999986433  5888864

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=86.76  E-value=0.56  Score=27.12  Aligned_cols=28  Identities=25%  Similarity=0.549  Sum_probs=20.9

Q ss_pred             EEEeCCCcEEEEeEeccCCC----CeEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPK----PNITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~----p~v~W~~~  128 (163)
                      ..+.+|++++|.|.+.|...    ..+.|++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ   41 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQ   41 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEE
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEE
Confidence            34677999999999987542    25789864

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=86.74  E-value=0.62  Score=26.70  Aligned_cols=28  Identities=18%  Similarity=0.527  Sum_probs=21.6

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC--eEEEEE
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP--NITWRR  127 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p--~v~W~~  127 (163)
                      ...+.+|+++.|.|.+.|....  .+.|.+
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvR   37 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVK   37 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEE
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCccee
Confidence            4567789999999999986433  477876

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=86.47  E-value=0.44  Score=27.18  Aligned_cols=28  Identities=29%  Similarity=0.659  Sum_probs=21.3

Q ss_pred             EEEeCCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        101 MVIREGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      ..+.+|+++.|.|.+.|....  .+.|++.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ   39 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQ   39 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCcccc
Confidence            457779999999999886433  5788864

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=86.43  E-value=0.49  Score=27.12  Aligned_cols=28  Identities=25%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             cEEEeCCCcEEEEeEeccCCC--CeEEEEE
Q psy16425        100 DMVIREGSNVTLKCAASGSPK--PNITWRR  127 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~--p~v~W~~  127 (163)
                      ...+.+|+++.|.|.+.|..-  -.+.|.+
T Consensus         9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (125)
T d1rihh1           9 NELAKPGASMKMSCRASGYSFTSYWIHWLK   38 (125)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEccCCCCCCCCcccc
Confidence            455778999999999988543  2467765

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.37  E-value=0.29  Score=27.22  Aligned_cols=29  Identities=17%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             cEEEeCCCcEEEEeEecc--CCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASG--SPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~--~p~p~v~W~~~  128 (163)
                      ...+.+|++++|.|...+  .....+.|++.
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq   38 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQII   38 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEE
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEEC
Confidence            456778999999998653  34456889974

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=86.35  E-value=0.44  Score=27.11  Aligned_cols=27  Identities=26%  Similarity=0.621  Sum_probs=20.1

Q ss_pred             EEeCCCcEEEEeEeccCC----CCeEEEEEC
Q psy16425        102 VIREGSNVTLKCAASGSP----KPNITWRRE  128 (163)
Q Consensus       102 ~~~~g~~~~l~C~~~~~p----~p~v~W~~~  128 (163)
                      .+.+|+++.|.|.+.|..    ...+.|++.
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ   41 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQ   41 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEE
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccc
Confidence            356799999999987642    245789974

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=86.30  E-value=0.63  Score=26.36  Aligned_cols=27  Identities=19%  Similarity=0.546  Sum_probs=20.8

Q ss_pred             EEEeCCCcEEEEeEeccCCCC---eEEEEE
Q psy16425        101 MVIREGSNVTLKCAASGSPKP---NITWRR  127 (163)
Q Consensus       101 ~~~~~g~~~~l~C~~~~~p~p---~v~W~~  127 (163)
                      ..+.+|+++.|.|.+.|..-.   .+.|.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvR   39 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIR   39 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEE
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccce
Confidence            356779999999999987543   367865

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=86.15  E-value=0.52  Score=27.02  Aligned_cols=29  Identities=31%  Similarity=0.598  Sum_probs=21.6

Q ss_pred             cEEEeCCCcEEEEeEeccCCC--CeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPK--PNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|...  -.+.|++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQ   39 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CceECCCCCeEEEEEECCccccCCcceecee
Confidence            345778999999999998643  34778764

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.14  E-value=0.38  Score=26.30  Aligned_cols=29  Identities=28%  Similarity=0.587  Sum_probs=21.0

Q ss_pred             CCCcEEEEeEeccC-CC---CeEEEEECCeEEE
Q psy16425        105 EGSNVTLKCAASGS-PK---PNITWRREGGELI  133 (163)
Q Consensus       105 ~g~~~~l~C~~~~~-p~---p~v~W~~~~~~~~  133 (163)
                      .++.++|.|.+.|. |.   ..+.|.+++....
T Consensus        15 ~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~   47 (103)
T d1fp5a1          15 IRKSPTITCLVVDLAPSKGTVNLTWSRASGKPV   47 (103)
T ss_dssp             TTCCCEEEEEEEESSCCSSCCEEEEEETTCCCC
T ss_pred             hCCCeEEEEEEEeeECCCceEEEEEcCCCceec
Confidence            46778999999874 54   2577888876543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=86.07  E-value=0.55  Score=26.53  Aligned_cols=28  Identities=32%  Similarity=0.651  Sum_probs=20.7

Q ss_pred             cEEEeCCCcEEEEeEeccCC--CCeEEEEE
Q psy16425        100 DMVIREGSNVTLKCAASGSP--KPNITWRR  127 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p--~p~v~W~~  127 (163)
                      ...+.+|+++.|.|.+.|..  .-.+.|.+
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvR   38 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIK   38 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeee
Confidence            45567899999999998853  23466765

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=86.06  E-value=0.79  Score=25.35  Aligned_cols=28  Identities=32%  Similarity=0.603  Sum_probs=21.2

Q ss_pred             cEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ...+.+|+++.|.|.... ....+.|++.
T Consensus         9 ~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ   36 (113)
T d1j8he1           9 YLVKRTGEKVFLECVQDM-DHENMFWYRQ   36 (113)
T ss_dssp             EEEEETTCCEEECEEESS-CCSEEEEEEE
T ss_pred             EEEECCCCCEEEEEEEcC-CccEEEeEEe
Confidence            566889999999998643 2456889873

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=85.99  E-value=0.49  Score=25.88  Aligned_cols=29  Identities=28%  Similarity=0.520  Sum_probs=21.8

Q ss_pred             CcEEEeCCCcEEEEeEeccCCCCeEEEEEC
Q psy16425         99 TDMVIREGSNVTLKCAASGSPKPNITWRRE  128 (163)
Q Consensus        99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~  128 (163)
                      ..+.+.+|++++|.|.... ....+.|++.
T Consensus         8 ~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ   36 (104)
T d1yqvl1           8 AIMSASPGEKVTMTCSASS-SVNYMYWYQQ   36 (104)
T ss_dssp             SEEEECTTCCEEEEEEESS-CCSCCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCC-CCCccEEEEe
Confidence            3667889999999998643 2345789874

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=85.91  E-value=0.54  Score=26.97  Aligned_cols=29  Identities=34%  Similarity=0.599  Sum_probs=21.8

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC--eEEEEEC
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP--NITWRRE  128 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~  128 (163)
                      ...+.+|+++.|.|.+.|+.-.  .+.|.+.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ   39 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQ   39 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEe
Confidence            4567789999999999986433  4778763

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=85.87  E-value=0.51  Score=26.86  Aligned_cols=28  Identities=32%  Similarity=0.595  Sum_probs=21.5

Q ss_pred             cEEEeCCCcEEEEeEeccCCCC--eEEEEE
Q psy16425        100 DMVIREGSNVTLKCAASGSPKP--NITWRR  127 (163)
Q Consensus       100 ~~~~~~g~~~~l~C~~~~~p~p--~v~W~~  127 (163)
                      ...+.+|+++.|.|.+.|....  .+.|.+
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~~~~~WvR   38 (121)
T d1nfdf1           9 GDLVQPGSSLKVSCAASGFTFSDFWMYWVR   38 (121)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGEEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceeece
Confidence            4567789999999999986433  467876