Psyllid ID: psy1647


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
MVITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQIIQFILVLLQHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTYIKKRK
cEEEEEcEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
cccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MVITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQIIQFILVLLQHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTYIKKRK
MVITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQIIQFILVLLQHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTYIKKRK
MVITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMlqiiqfilvllqHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTYIKKRK
*VITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQIIQFILVLLQHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTYI****
MVITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQIIQFILVLLQHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTYI****
MVITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQIIQFILVLLQHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTYIKKRK
MVITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQIIQFILVLLQHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTYIKK**
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiii
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MVITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQIIQFILVLLQHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTYIKKRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query111 2.2.26 [Sep-21-2011]
Q1HRV8358 Elongation of very long c N/A N/A 0.954 0.296 0.405 9e-21
Q9GZR5314 Elongation of very long c yes N/A 0.954 0.337 0.452 2e-20
Q3S8M4314 Elongation of very long c yes N/A 0.954 0.337 0.443 3e-20
Q95K73314 Elongation of very long c N/A N/A 0.954 0.337 0.443 3e-20
Q9EQC4312 Elongation of very long c yes N/A 0.954 0.339 0.433 5e-20
A0JNC4281 Elongation of very long c no N/A 0.990 0.391 0.429 7e-17
Q9D2Y9281 Elongation of very long c no N/A 0.990 0.391 0.429 3e-16
Q5M8U1295 Elongation of very long c no N/A 0.927 0.349 0.432 3e-16
Q32NI8295 Elongation of very long c N/A N/A 0.927 0.349 0.423 4e-16
Q920L7299 Elongation of very long c no N/A 0.927 0.344 0.413 1e-15
>sp|Q1HRV8|ELVL1_AEDAE Elongation of very long chain fatty acids protein AAEL008004 OS=Aedes aegypti GN=AAEL008004 PE=2 SV=2 Back     alignment and function desciption
 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 67/106 (63%)

Query: 1   MVITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQII 60
           M ++ W  +KF  G  + F G +N FVH+ MY+YY  +A GP+ QKYLWWK Y+T LQ++
Sbjct: 153 MPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYLFTAMGPQFQKYLWWKKYLTSLQMV 212

Query: 61  QFILVLLQHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTY 106
           QF+ +++    L+ +DC       ++I  +A++F+ LF  FY  TY
Sbjct: 213 QFVAIMVHAFQLLFIDCNYPKAFVWWIGMHAVMFLFLFNEFYQSTY 258




Could be implicated in synthesis of very long chain fatty acids.
Aedes aegypti (taxid: 7159)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: nEC: 8
>sp|Q9GZR5|ELOV4_HUMAN Elongation of very long chain fatty acids protein 4 OS=Homo sapiens GN=ELOVL4 PE=1 SV=1 Back     alignment and function description
>sp|Q3S8M4|ELOV4_MACMU Elongation of very long chain fatty acids protein 4 OS=Macaca mulatta GN=ELOVL4 PE=3 SV=1 Back     alignment and function description
>sp|Q95K73|ELOV4_MACFA Elongation of very long chain fatty acids protein 4 OS=Macaca fascicularis GN=ELOVL4 PE=2 SV=1 Back     alignment and function description
>sp|Q9EQC4|ELOV4_MOUSE Elongation of very long chain fatty acids protein 4 OS=Mus musculus GN=Elovl4 PE=1 SV=2 Back     alignment and function description
>sp|A0JNC4|ELOV7_BOVIN Elongation of very long chain fatty acids protein 7 OS=Bos taurus GN=ELOVL7 PE=2 SV=1 Back     alignment and function description
>sp|Q9D2Y9|ELOV7_MOUSE Elongation of very long chain fatty acids protein 7 OS=Mus musculus GN=Elovl7 PE=2 SV=1 Back     alignment and function description
>sp|Q5M8U1|ELOV5_XENTR Elongation of very long chain fatty acids protein 5 OS=Xenopus tropicalis GN=elovl5 PE=2 SV=1 Back     alignment and function description
>sp|Q32NI8|ELOV5_XENLA Elongation of very long chain fatty acids protein 5 OS=Xenopus laevis GN=elovl5 PE=2 SV=1 Back     alignment and function description
>sp|Q920L7|ELOV5_RAT Elongation of very long chain fatty acids protein 5 OS=Rattus norvegicus GN=Elovl5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query111
350416658 266 PREDICTED: elongation of very long chain 0.981 0.409 0.504 5e-27
340722457 266 PREDICTED: elongation of very long chain 0.981 0.409 0.504 6e-27
328699135 282 PREDICTED: elongation of very long chain 1.0 0.393 0.522 7e-26
312374906 916 hypothetical protein AND_15361 [Anophele 1.0 0.121 0.437 3e-25
170061504 274 elongase [Culex quinquefasciatus] gi|167 0.990 0.401 0.472 3e-24
345497488 267 PREDICTED: elongation of very long chain 0.963 0.400 0.457 3e-24
239791051 278 ACYPI007931 [Acyrthosiphon pisum] 0.909 0.363 0.534 4e-24
193676359 278 PREDICTED: elongation of very long chain 0.909 0.363 0.534 4e-24
348505004 287 PREDICTED: elongation of very long chain 1.0 0.386 0.468 1e-23
195158469 323 GL13809 [Drosophila persimilis] gi|19411 0.981 0.337 0.458 4e-23
>gi|350416658|ref|XP_003491040.1| PREDICTED: elongation of very long chain fatty acids protein AAEL008004-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 79/109 (72%)

Query: 2   VITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQIIQ 61
            I +W YLKF+ GEQ   +G +N FVH+ MYSYY ++A GP+ +KYLWWK Y+T +Q++Q
Sbjct: 157 AIFSWCYLKFLPGEQGALIGFLNTFVHIVMYSYYLIAALGPQYKKYLWWKKYMTWIQLVQ 216

Query: 62  FILVLLQHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTYIKKR 110
           F L+L   + ++ +DCKV   ++YF + N I+FI LFGNFY K+Y KK+
Sbjct: 217 FFLMLGYQLMILAMDCKVPRALTYFFIANTIIFIYLFGNFYRKSYTKKQ 265




Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722457|ref|XP_003399622.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328699135|ref|XP_003240836.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|312374906|gb|EFR22373.1| hypothetical protein AND_15361 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170061504|ref|XP_001866261.1| elongase [Culex quinquefasciatus] gi|167879725|gb|EDS43108.1| elongase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|345497488|ref|XP_003428006.1| PREDICTED: elongation of very long chain fatty acids protein 7-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|239791051|dbj|BAH72041.1| ACYPI007931 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|193676359|ref|XP_001952377.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|348505004|ref|XP_003440051.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|195158469|ref|XP_002020108.1| GL13809 [Drosophila persimilis] gi|194116877|gb|EDW38920.1| GL13809 [Drosophila persimilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query111
FB|FBgn0260942322 bond "james bond" [Drosophila 0.981 0.338 0.418 5.5e-22
FB|FBgn0037534329 CG2781 [Drosophila melanogaste 0.981 0.331 0.4 8e-21
FB|FBgn0038986295 CG5278 [Drosophila melanogaste 0.990 0.372 0.436 1e-20
ZFIN|ZDB-GENE-050522-453264 zgc:112263 "zgc:112263" [Danio 0.981 0.412 0.387 1e-20
ZFIN|ZDB-GENE-060929-240268 zgc:153394 "zgc:153394" [Danio 0.990 0.410 0.390 1.7e-20
UNIPROTKB|F1NXS3280 ELOVL4 "Uncharacterized protei 0.900 0.357 0.441 1.2e-19
ZFIN|ZDB-GENE-030131-7672303 elovl4b "elongation of very lo 0.954 0.349 0.396 1.2e-19
ZFIN|ZDB-GENE-040426-1767309 elovl4a "elongation of very lo 0.900 0.323 0.411 3.1e-19
UNIPROTKB|J9PBB9314 ELOVL4 "Uncharacterized protei 0.945 0.334 0.420 5.1e-19
UNIPROTKB|Q9GZR5314 ELOVL4 "Elongation of very lon 0.945 0.334 0.420 5.1e-19
FB|FBgn0260942 bond "james bond" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 46/110 (41%), Positives = 66/110 (60%)

Query:     2 VITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMXXXXX 61
             V+ +W YLK+  GEQ + +G +N  VH+ MY YY ++A GP+ QKYLWWK Y+T      
Sbjct:   153 VLFSWGYLKYAPGEQGVIIGILNSGVHIIMYFYYMVAAMGPQYQKYLWWKKYMTSIQLIQ 212

Query:    62 XXXXXXXHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYYKTYIKKRK 111
                     + +    C +   +++F VGN ++F+ LFGNFY KTY KK K
Sbjct:   213 FVLILGYMLTVGAKGCNMPKTLTFFFVGNTVIFLYLFGNFYRKTY-KKAK 261




GO:0016021 "integral to membrane" evidence=IEA
GO:0000915 "cytokinesis, actomyosin contractile ring assembly" evidence=IMP
GO:0051225 "spindle assembly" evidence=IMP
GO:0007111 "cytokinesis after meiosis II" evidence=IMP
GO:0007110 "cytokinesis after meiosis I" evidence=IMP
GO:0007112 "male meiosis cytokinesis" evidence=IMP
GO:0000212 "meiotic spindle organization" evidence=IMP
FB|FBgn0037534 CG2781 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0038986 CG5278 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-453 zgc:112263 "zgc:112263" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-240 zgc:153394 "zgc:153394" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXS3 ELOVL4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7672 elovl4b "elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1767 elovl4a "elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9PBB9 ELOVL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GZR5 ELOVL4 "Elongation of very long chain fatty acids protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query111
pfam01151244 pfam01151, ELO, GNS1/SUR4 family 6e-25
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family Back     alignment and domain information
 Score = 93.8 bits (234), Expect = 6e-25
 Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 6/116 (5%)

Query: 1   MVITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQII 60
           M++ +W  LK+  G    F+  +N FVHV MY YYFL+A G R    +WWK YIT LQII
Sbjct: 127 MLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALGAR-GLPVWWKKYITQLQII 185

Query: 61  QFILVLLQHVGLIVLDCKVD-----LKISYFIVGNAILFILLFGNFYYKTYIKKRK 111
           QF+L L      +    K        K     +   + ++ LF NFY K+Y K +K
Sbjct: 186 QFVLGLAHVGYALYNYTKGGCGGPFPKAVRLGLVYYVSYLFLFLNFYIKSYKKPKK 241


Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 affects plasma membrane H+-ATPase activity, and may act on a glucose-signaling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1. Length = 244

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 111
KOG3071|consensus274 100.0
PF01151250 ELO: GNS1/SUR4 family; InterPro: IPR002076 This gr 100.0
PTZ00251272 fatty acid elongase; Provisional 99.96
KOG3072|consensus282 99.9
>KOG3071|consensus Back     alignment and domain information
Probab=100.00  E-value=1.8e-33  Score=214.55  Aligned_cols=111  Identities=44%  Similarity=0.866  Sum_probs=103.9

Q ss_pred             CeeEEeeeeeeeccCcchhHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhhhHHHhHHHHHHHHHHhhhhee-ec-CCCC
Q psy1647           1 MVITTWAYLKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQIIQFILVLLQHVGL-IV-LDCK   78 (111)
Q Consensus         1 m~~~~w~~~~~~~~g~~~~~~~~Ns~VH~iMY~YY~l~a~g~~~~~~~~~k~~iT~~QivQF~~~~~~~~~~-~~-~~C~   78 (111)
                      |++++|..+++.+||++.+.+.+|++||++||+||+++|+||+.++.+|||+++|.+|++||++..+|..+. ++ +||.
T Consensus       150 m~~~~~~~l~~~~~g~~~~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~~~c~  229 (274)
T KOG3071|consen  150 MAFLSYLWLKFYGGGHGFFAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLILFVHTLYVHLFKPGCC  229 (274)
T ss_pred             HHHhhhheeEEeCCceeeeeeehhhhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHHHHHHhheeeecCCCC
Confidence            678899999999999999999999999999999999999999999999999999999999999999999988 55 5899


Q ss_pred             CChH-HHHHHHHHHHHHHHHHHHHhHhhhccCCC
Q psy1647          79 VDLK-ISYFIVGNAILFILLFGNFYYKTYIKKRK  111 (111)
Q Consensus        79 ~~~~-~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~  111 (111)
                      .|++ +.+.+.+..++++.||.|||+|+|+|++|
T Consensus       230 ~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~  263 (274)
T KOG3071|consen  230 FGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKK  263 (274)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9998 88888889999999999999999998653



>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established Back     alignment and domain information
>PTZ00251 fatty acid elongase; Provisional Back     alignment and domain information
>KOG3072|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00