Psyllid ID: psy16496

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MELNITNLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAGCFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHKNGKARNGIQRGAPIPPPRPKPCP
cEEEEEccEEEEEEHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccEEEEEEEccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccEEEcccccccEEEEEEcccccEEEEEEEEEEEEccccEEEEEEEEEccccEEEEcccccEEEEcccccccccccccEEEccccccccEEEEEEccEEccccccccccccccccccc
ccEEcccHEEEEHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccHHHHccEEEEEEccccHHHHHHHHHHHHHccccEEEEEEccEEEEEcccHHHHHHHHccccccccEEEEEccccEEEHHHcccccEEEEEccccccEEEccEEEEEcccccHcEEEEEEEEccccEEEEcccEEEEEEcccccccccccccEEEHHccccccEEEEEcccccEEEEEEEEEcccccccccc
MELNITNLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEgwdeeghhasdslhyegravdittsdrdsskyGLLARMAVEAGFDWVyyesrnhihcsvktetthvngkgagcftgdstvtldnhktinitdlnigdkvltlntitgEMEYSEVLLFLhrdpnlvhNFVQITTesgslikmtpshlilrwhrpnaksILNDIEYTYAErvrvndsiivhkngkarngiqrgapippprpkpcp
MELNITNLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEghhasdslhyegravdittsdrdsskyGLLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAGCFTGDSTVTLDNHktinitdlnigdkVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSiivhkngkarngiqrgapippprpkpcp
MELNITNLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAGCFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHKNGKARNGIQRGApippprpkpcp
***NITNLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITT*****SKYGLLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAGCFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHK***********************
**LNITNLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAGCFTGDSTVTLDNHKT*NITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHKNG*********************
MELNITNLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAGCFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHKNGKARNGIQRGAPIPPPRPKPCP
MELNITNLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAGCFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHKNGKARNGIQRGAPIPPPRP****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELNITNLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAGCFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHKNGKARNGIQRGAPIPPPRPKPCP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
B4LZT9483 Protein hedgehog OS=Droso N/A N/A 0.816 0.414 0.509 3e-55
B4K4M0476 Protein hedgehog OS=Droso N/A N/A 0.816 0.420 0.509 3e-55
P56674481 Protein hedgehog OS=Droso N/A N/A 0.812 0.413 0.507 7e-54
Q92008418 Sonic hedgehog protein A no N/A 0.889 0.521 0.491 1e-53
Q90419416 Tiggy-winkle hedgehog pro no N/A 0.812 0.478 0.519 1e-53
B4NJP3469 Protein hedgehog OS=Droso N/A N/A 0.812 0.424 0.5 2e-53
Q61488396 Desert hedgehog protein O no N/A 0.820 0.507 0.519 3e-53
P97812411 Indian hedgehog protein O yes N/A 0.706 0.420 0.556 3e-53
Q15465 462 Sonic hedgehog protein OS yes N/A 0.706 0.374 0.590 5e-53
Q91611398 Desert hedgehog protein B N/A N/A 0.824 0.507 0.509 8e-53
>sp|B4LZT9|HH_DROVI Protein hedgehog OS=Drosophila virilis GN=hh PE=3 SV=1 Back     alignment and function desciption
 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 149/206 (72%), Gaps = 6/206 (2%)

Query: 16  QRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYG 75
           +R +EKLNTL+ SVMNEWPGVRL V E WDE+  H  +SLHYEGRAV I TSDRD SKYG
Sbjct: 168 KRCREKLNTLSYSVMNEWPGVRLLVTESWDEDHQHGQESLHYEGRAVTIATSDRDQSKYG 227

Query: 76  LLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAGCFTGDSTVTLDNHKTINITDL 135
           +LAR+AVEAGFDWV Y SR HI+CSVK++++       GCFT +ST  L++     +++L
Sbjct: 228 MLARLAVEAGFDWVSYVSRRHIYCSVKSDSSPFISHVHGCFTPESTALLESGAKKPLSEL 287

Query: 136 NIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRP 195
            IGD+VL++N   G+  YSEV+LF+ R+   + NFVQ+ T+SG+++ +TP+HLI  W +P
Sbjct: 288 AIGDRVLSMNG-KGQAVYSEVILFMDRNLEQMQNFVQLHTDSGAVLTVTPAHLITVW-QP 345

Query: 196 NAKSILNDIEYTYAERVRVNDSIIVH 221
             ++    +++ +A+RV   + ++VH
Sbjct: 346 EREA----LDFVFADRVEELNYVLVH 367
The hedgehog protein C-product, which mediates the autocatalytic activity, has no signaling activity.
Drosophila virilis (taxid: 7244)
>sp|B4K4M0|HH_DROMO Protein hedgehog OS=Drosophila mojavensis GN=hh PE=3 SV=1 Back     alignment and function description
>sp|P56674|HH_DROHY Protein hedgehog OS=Drosophila hydei GN=hh PE=3 SV=4 Back     alignment and function description
>sp|Q92008|SHH_DANRE Sonic hedgehog protein A OS=Danio rerio GN=shha PE=1 SV=1 Back     alignment and function description
>sp|Q90419|TWHH_DANRE Tiggy-winkle hedgehog protein OS=Danio rerio GN=shhb PE=1 SV=1 Back     alignment and function description
>sp|B4NJP3|HH_DROWI Protein hedgehog OS=Drosophila willistoni GN=hh PE=3 SV=1 Back     alignment and function description
>sp|Q61488|DHH_MOUSE Desert hedgehog protein OS=Mus musculus GN=Dhh PE=1 SV=1 Back     alignment and function description
>sp|P97812|IHH_MOUSE Indian hedgehog protein OS=Mus musculus GN=Ihh PE=1 SV=2 Back     alignment and function description
>sp|Q15465|SHH_HUMAN Sonic hedgehog protein OS=Homo sapiens GN=SHH PE=1 SV=1 Back     alignment and function description
>sp|Q91611|DHHB_XENLA Desert hedgehog protein B OS=Xenopus laevis GN=dhh-b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
270002867 352 hedgehog [Tribolium castaneum] 0.844 0.588 0.545 5e-61
30961831 421 hedgehog, partial [Artemia franciscana] 0.706 0.410 0.657 1e-60
167234445 392 hedgehog precursor [Tribolium castaneum] 0.812 0.507 0.561 2e-60
94962764305 hedgehog, partial [Tribolium castaneum] 0.812 0.652 0.561 2e-60
345494261 424 PREDICTED: sonic hedgehog protein-like [ 0.706 0.408 0.620 3e-60
242003707 412 hypothetical protein, conserved [Pedicul 0.722 0.429 0.612 2e-59
307175353316 Sonic hedgehog protein [Camponotus flori 0.824 0.639 0.534 9e-59
157114095 418 hedgehog [Aedes aegypti] gi|108877449|gb 0.820 0.480 0.528 1e-58
383857349 443 PREDICTED: tiggy-winkle hedgehog protein 0.702 0.388 0.626 3e-58
170035433 424 hedgehog [Culex quinquefasciatus] gi|167 0.808 0.466 0.531 4e-58
>gi|270002867|gb|EEZ99314.1| hedgehog [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 119/218 (54%), Positives = 152/218 (69%), Gaps = 11/218 (5%)

Query: 8   LTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTS 67
           L + F  + R KEKLNTLAISVMN+WPGVRL V EGWDEEG+H  +SLHYEGRAVDITTS
Sbjct: 51  LLYSFKYYARCKEKLNTLAISVMNQWPGVRLLVTEGWDEEGYHTPESLHYEGRAVDITTS 110

Query: 68  DRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAGCFTGDSTVTLDNH 127
           DRD SKYG+LAR+AVEAGFDWVYYESR HIHCSVK+E++    K  GCF+G+STV     
Sbjct: 111 DRDRSKYGMLARLAVEAGFDWVYYESRAHIHCSVKSESSQA-AKYGGCFSGESTVLTSTG 169

Query: 128 KTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSH 187
              N++ L IG+K+  L+  T E+ +SEVLLFL  +P+    F+ IT  SG  + +TPSH
Sbjct: 170 LRRNLSSLQIGEKIQALDPSTNELVFSEVLLFLDYNPSQRRQFLHITLASGRTLTVTPSH 229

Query: 188 LILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHKNGK 225
           L+          +L+D    YA++++  D ++V  N K
Sbjct: 230 LL----------VLDDRTMKYAQKLQPGDFLLVSDNAK 257

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|30961831|gb|AAP38182.1| hedgehog, partial [Artemia franciscana] Back     alignment and taxonomy information
>gi|167234445|ref|NP_001107837.1| hedgehog precursor [Tribolium castaneum] Back     alignment and taxonomy information
>gi|94962764|gb|ABF48588.1| hedgehog, partial [Tribolium castaneum] Back     alignment and taxonomy information
>gi|345494261|ref|XP_001605475.2| PREDICTED: sonic hedgehog protein-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242003707|ref|XP_002422829.1| hypothetical protein, conserved [Pediculus humanus corporis] gi|212505699|gb|EEB10091.1| hypothetical protein, conserved [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307175353|gb|EFN65372.1| Sonic hedgehog protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|157114095|ref|XP_001657979.1| hedgehog [Aedes aegypti] gi|108877449|gb|EAT41674.1| AAEL006708-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|383857349|ref|XP_003704167.1| PREDICTED: tiggy-winkle hedgehog protein-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|170035433|ref|XP_001845574.1| hedgehog [Culex quinquefasciatus] gi|167877390|gb|EDS40773.1| hedgehog [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
UNIPROTKB|B4LZT9483 hh "Protein hedgehog" [Drosoph 0.840 0.426 0.502 2.1e-52
FB|FBgn0004644471 hh "hedgehog" [Drosophila mela 0.836 0.435 0.485 5.6e-52
UNIPROTKB|B4HFB7465 hh "Protein hedgehog" [Drosoph 0.836 0.440 0.485 5.6e-52
ZFIN|ZDB-GENE-980526-41416 shhb "sonic hedgehog b" [Danio 0.812 0.478 0.519 5.6e-52
UNIPROTKB|B4K4M0476 hh "Protein hedgehog" [Drosoph 0.840 0.432 0.502 7.2e-52
UNIPROTKB|B4PN49465 hh "Protein hedgehog" [Drosoph 0.836 0.440 0.485 1.2e-51
UNIPROTKB|B3P7F8465 hh "Protein hedgehog" [Drosoph 0.836 0.440 0.485 2.4e-51
UNIPROTKB|B4NJP3469 hh "Protein hedgehog" [Drosoph 0.812 0.424 0.509 2.4e-51
UNIPROTKB|B4R1D8395 hh "Protein hedgehog" [Drosoph 0.840 0.521 0.481 2.4e-51
UNIPROTKB|Q29AA9481 hh-1 "Protein hedgehog" [Droso 0.836 0.426 0.485 2.4e-51
UNIPROTKB|B4LZT9 hh "Protein hedgehog" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 107/213 (50%), Positives = 152/213 (71%)

Query:    16 QRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYG 75
             +R +EKLNTL+ SVMNEWPGVRL V E WDE+  H  +SLHYEGRAV I TSDRD SKYG
Sbjct:   168 KRCREKLNTLSYSVMNEWPGVRLLVTESWDEDHQHGQESLHYEGRAVTIATSDRDQSKYG 227

Query:    76 LLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAGCFTGDSTVTLDNHKTINITDL 135
             +LAR+AVEAGFDWV Y SR HI+CSVK++++       GCFT +ST  L++     +++L
Sbjct:   228 MLARLAVEAGFDWVSYVSRRHIYCSVKSDSSPFISHVHGCFTPESTALLESGAKKPLSEL 287

Query:   136 NIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRP 195
              IGD+VL++N   G+  YSEV+LF+ R+   + NFVQ+ T+SG+++ +TP+HLI  W +P
Sbjct:   288 AIGDRVLSMNG-KGQAVYSEVILFMDRNLEQMQNFVQLHTDSGAVLTVTPAHLITVW-QP 345

Query:   196 NAKSILNDIEYTYAERVRVNDSIIVHK-NGKAR 227
               +++    ++ +A+RV   + ++VH   G+ R
Sbjct:   346 EREAL----DFVFADRVEELNYVLVHDATGELR 374
GO:0005634 "nucleus" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0007367 "segment polarity determination" evidence=ISS
GO:0045168 "cell-cell signaling involved in cell fate commitment" evidence=ISS
FB|FBgn0004644 hh "hedgehog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|B4HFB7 hh "Protein hedgehog" [Drosophila sechellia (taxid:7238)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-980526-41 shhb "sonic hedgehog b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B4K4M0 hh "Protein hedgehog" [Drosophila mojavensis (taxid:7230)] Back     alignment and assigned GO terms
UNIPROTKB|B4PN49 hh "Protein hedgehog" [Drosophila yakuba (taxid:7245)] Back     alignment and assigned GO terms
UNIPROTKB|B3P7F8 hh "Protein hedgehog" [Drosophila erecta (taxid:7220)] Back     alignment and assigned GO terms
UNIPROTKB|B4NJP3 hh "Protein hedgehog" [Drosophila willistoni (taxid:7260)] Back     alignment and assigned GO terms
UNIPROTKB|B4R1D8 hh "Protein hedgehog" [Drosophila simulans (taxid:7240)] Back     alignment and assigned GO terms
UNIPROTKB|Q29AA9 hh-1 "Protein hedgehog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q15465SHH_HUMANNo assigned EC number0.59090.70610.3744yesN/A
P97812IHH_MOUSENo assigned EC number0.55680.70610.4209yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
pfam01085160 pfam01085, HH_signal, Hedgehog amino-terminal sign 2e-56
pfam01079214 pfam01079, Hint, Hint module 6e-35
smart00306100 smart00306, HintN, Hint (Hedgehog/Intein) domain N 3e-22
cd00081136 cd00081, Hint, Hedgehog/Intein domain, found in He 2e-18
pfam08291110 pfam08291, Peptidase_M15_3, Peptidase M15 1e-04
TIGR0144581 TIGR01445, intein_Nterm, intein N-terminal splicin 1e-04
>gnl|CDD|201590 pfam01085, HH_signal, Hedgehog amino-terminal signalling domain Back     alignment and domain information 
 Score =  177 bits (449), Expect = 2e-56
 Identities = 70/85 (82%), Positives = 79/85 (92%)

Query: 16  QRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYG 75
           QR K+KLN LAISVMN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG
Sbjct: 76  QRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 135

Query: 76  LLARMAVEAGFDWVYYESRNHIHCS 100
           +LAR+AVEAGFDWVYYES+ HIHCS
Sbjct: 136 MLARLAVEAGFDWVYYESKAHIHCS 160

For the carboxyl Hint module, see pfam01079. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. Length = 160
>gnl|CDD|216288 pfam01079, Hint, Hint module Back     alignment and domain information
>gnl|CDD|197642 smart00306, HintN, Hint (Hedgehog/Intein) domain N-terminal region Back     alignment and domain information
>gnl|CDD|238035 cd00081, Hint, Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e Back     alignment and domain information
>gnl|CDD|116875 pfam08291, Peptidase_M15_3, Peptidase M15 Back     alignment and domain information
>gnl|CDD|233416 TIGR01445, intein_Nterm, intein N-terminal splicing region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
PF01085160 HH_signal: Hedgehog amino-terminal signalling doma 100.0
KOG3638|consensus414 100.0
PF01079217 Hint: Hint module; InterPro: IPR001767 This domain 100.0
smart00306100 HintN Hint (Hedgehog/Intein) domain N-terminal reg 99.81
cd00081136 Hint Hedgehog/Intein domain, found in Hedgehog pro 99.8
PF07591130 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 99.65
PF14890 323 Intein_splicing: Intein splicing domain; PDB: 1MI8 99.27
TIGR0144581 intein_Nterm intein N-terminal splicing region. Th 99.24
PRK14714 1337 DNA polymerase II large subunit; Provisional 99.13
PF14623162 Vint: Hint-domain 99.05
PRK04132 846 replication factor C small subunit; Provisional 99.04
PRK14898 858 DNA-directed RNA polymerase subunit A''; Provision 99.01
PRK09519 790 recA DNA recombination protein RecA; Reviewed 98.96
PF13403147 Hint_2: Hint domain 98.96
PRK14715 1627 DNA polymerase II large subunit; Provisional 98.95
PRK14845 1049 translation initiation factor IF-2; Provisional 98.95
PRK07773 886 replicative DNA helicase; Validated 98.92
PRK14701 1638 reverse gyrase; Provisional 98.74
PF05203215 Hom_end_hint: Hom_end-associated Hint; InterPro: I 98.67
PRK08332 1740 ribonucleotide-diphosphate reductase subunit alpha 98.57
PF05951152 Peptidase_M15_2: Bacterial protein of unknown func 98.48
PF08291110 Peptidase_M15_3: Peptidase M15 ; InterPro: IPR0132 98.43
PRK14698 1017 V-type ATP synthase subunit A; Provisional 98.35
PRK08332 1740 ribonucleotide-diphosphate reductase subunit alpha 98.12
smart00536116 AXH domain in Ataxins and HMG containing proteins. 98.06
COG1372 420 Intein/homing endonuclease [DNA replication, recom 97.61
COG3108185 Uncharacterized protein conserved in bacteria [Fun 97.32
PRK09532874 DNA polymerase III subunit alpha; Reviewed 97.13
PF01959354 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); Inte 97.12
KOG4053|consensus224 97.08
PRK02290344 3-dehydroquinate synthase; Provisional 97.04
COG1465376 Predicted alternative 3-dehydroquinate synthase [A 96.69
PF08517115 AXH: Ataxin-1 and HBP1 module (AXH); InterPro: IPR 96.56
PF02557132 VanY: D-alanyl-D-alanine carboxypeptidase; InterPr 93.39
PRK10178184 D-alanyl-D-alanine dipeptidase; Provisional 91.76
PF15057124 DUF4537: Domain of unknown function (DUF4537) 90.45
PF15057124 DUF4537: Domain of unknown function (DUF4537) 84.77
>PF01085 HH_signal: Hedgehog amino-terminal signalling domain; InterPro: IPR000320 This domain identifies a group of sequences which belong to the MEROPS peptidase family C46 (clan CH) Back     alignment and domain information 
Probab=100.00  E-value=3.4e-52  Score=345.42  Aligned_cols=94  Identities=77%  Similarity=1.245  Sum_probs=84.3

Q ss_pred             cccchhhhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCCCCCCCCCCcccceeeeeeEecCCCcchHHHHHhhhhhcCc
Q psy16496          7 NLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGF   86 (245)
Q Consensus         7 ~~~~~r~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~~~~~~~slh~egra~di~~s~~~~~k~g~La~la~~aGf   86 (245)
                      ||||||+||||||+||+.||++||||||||||||||||||++||+++|||||||||||||||||++||||||+||++|||
T Consensus        67 ~tgadR~MTkRckdkL~~La~~V~nqwpgvkLrV~eaWded~~h~~~sLHyeGRAvdittsd~d~~k~g~LarLAv~AGF  146 (160)
T PF01085_consen   67 GTGADRLMTKRCKDKLNTLAISVMNQWPGVKLRVTEAWDEDGHHSPDSLHYEGRAVDITTSDRDRSKYGMLARLAVEAGF  146 (160)
T ss_dssp             SSSGGGEE-HHHHHHHHHHHHHHHHHSTT--EEEEESS-SSSTSSTT-GGGGT-EEEEEETT--GGGHHHHHHHHHHTT-
T ss_pred             cCCCcccchHHHHHHHHHHHHHHHHhCCCcEEEEEecccCcccCCchhccccceeEEEEeccccchhhHHHHHHHhhccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEcccceeeec
Q psy16496         87 DWVYYESRNHIHCS  100 (245)
Q Consensus        87 d~V~~~~r~~ih~~  100 (245)
                      |||+|++++|||||
T Consensus       147 DwV~Yes~~hiHcS  160 (160)
T PF01085_consen  147 DWVYYESRNHIHCS  160 (160)
T ss_dssp             SEEEEEETTEEEEE
T ss_pred             CeEEecccceEecC
Confidence            99999999999997

The type example is the hedgehog protein from Drosophila melanogaster (Fruit fly) which self-processes by a one-time cysteine dependent self cleavage. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. members of this family are composed of two domains. These proteins are autocatalytically cleaved by the C-terminal domain IPR001767 from INTERPRO. This family is the N-terminal domain that is responsible for both local and long-range signalling activities. The structure of this domain is known [] and reveals a tetrahedrally coordinated zinc ion that appears to be structurally analogous to the zinc coordination sites of zinc hydrolases, such as thermolysin and carboxypeptidase A. This putative catalytic site represents a distinct activity from the autoprocessing activity that resides in the carboxy-terminal domain.; GO: 0007267 cell-cell signaling, 0007275 multicellular organismal development; PDB: 2WFR_A 3N1Q_B 3N1G_B 2WFQ_A 2WG3_A 3MXW_A 3M1N_B 3HO5_H 3K7H_B 3N1O_B ....
>KOG3638|consensus Back     alignment and domain information
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH) Back     alignment and domain information
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region Back     alignment and domain information
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e Back     alignment and domain information
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans Back     alignment and domain information
>PF14890 Intein_splicing: Intein splicing domain; PDB: 1MI8_A 2CW7_A 2CW8_A Back     alignment and domain information
>TIGR01445 intein_Nterm intein N-terminal splicing region Back     alignment and domain information
>PRK14714 DNA polymerase II large subunit; Provisional Back     alignment and domain information
>PF14623 Vint: Hint-domain Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional Back     alignment and domain information
>PRK09519 recA DNA recombination protein RecA; Reviewed Back     alignment and domain information
>PF13403 Hint_2: Hint domain Back     alignment and domain information
>PRK14715 DNA polymerase II large subunit; Provisional Back     alignment and domain information
>PRK14845 translation initiation factor IF-2; Provisional Back     alignment and domain information
>PRK07773 replicative DNA helicase; Validated Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PF05203 Hom_end_hint: Hom_end-associated Hint; InterPro: IPR007868 Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life Back     alignment and domain information
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PF05951 Peptidase_M15_2: Bacterial protein of unknown function (DUF882); InterPro: IPR010275 This family consists of proteins related to metallopeptidases belong to MEROPS peptidase family M15A Back     alignment and domain information
>PF08291 Peptidase_M15_3: Peptidase M15 ; InterPro: IPR013230 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK14698 V-type ATP synthase subunit A; Provisional Back     alignment and domain information
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>smart00536 AXH domain in Ataxins and HMG containing proteins Back     alignment and domain information
>COG1372 Intein/homing endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>COG3108 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK09532 DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4 Back     alignment and domain information
>KOG4053|consensus Back     alignment and domain information
>PRK02290 3-dehydroquinate synthase; Provisional Back     alignment and domain information
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF08517 AXH: Ataxin-1 and HBP1 module (AXH); InterPro: IPR013723 AXH is a protein-protein and RNA binding motif found in Ataxin-1 (ATX1)[] Back     alignment and domain information
>PF02557 VanY: D-alanyl-D-alanine carboxypeptidase; InterPro: IPR003709 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
3ho5_H169 Crystal Structure Of Hedgehog-interacting Protein ( 8e-42
3m1n_A175 Crystal Structure Of Human Sonic Hedgehog N-Termina 9e-42
3n1r_A160 Crystal Structure Of Shhn Length = 160 1e-41
1vhh_A162 A Potential Catalytic Site Within The Amino-Termina 1e-41
2wg4_A155 Crystal Structure Of The Complex Between Human Hedg 1e-41
2wfx_A152 Crystal Structure Of The Complex Between Human Hedg 1e-41
3d1m_A168 Crystal Structure Of Sonic Hedgehog Bound To The Th 2e-41
3k7h_B187 Crystal Structure Of The E95k Mutant Of The Indian 4e-41
3k7j_B187 Crystal Structure Of The D100e Mutant Of The Indian 4e-41
3k7g_B187 Crystal Structure Of The Indian Hedgehog N-Terminal 4e-41
3n1f_A169 Crystal Structure Of Ihhn Bound To Cdofn3 Length = 5e-41
3k7i_B187 Crystal Structure Of The E131k Mutant Of The Indian 1e-40
2wfq_A165 Crystal Structure Of The N-terminal Signalling Doma 4e-40
2wg3_A164 Crystal Structure Of The Complex Between Human Hedg 4e-40
3n1g_B170 Crystal Structure Of Dhhn Bound To Bocfn3 Length = 7e-40
2ibg_E150 Crystal Structure Of Hedgehog Bound To The Fniii Do 8e-35
1at0_A145 17-Kda Fragment Of Hedgehog C-Terminal Autoprocessi 3e-13
>pdb|3HO5|H Chain H, Crystal Structure Of Hedgehog-interacting Protein (hhip) And Sonic Hedgehog (shh) Complex Length = 169 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (421), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 76/99 (76%), Positives = 86/99 (86%), Gaps = 1/99 (1%)
Query: 16  QRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYG 75
           QR K+KLN LAISVMN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG
Sbjct: 72  QRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 131
Query: 76  LLARMAVEAGFDWVYYESRNHIHCSVKTETTHVNGKGAG 114
           +LAR+AVEAGFDWVYYES+ HIHCSVK E + V  K  G
Sbjct: 132 MLARLAVEAGFDWVYYESKAHIHCSVKAENS-VAAKSGG 169
>pdb|3M1N|A Chain A, Crystal Structure Of Human Sonic Hedgehog N-Terminal Domain Length = 175 Back     alignment and structure
>pdb|3N1R|A Chain A, Crystal Structure Of Shhn Length = 160 Back     alignment and structure
>pdb|1VHH|A Chain A, A Potential Catalytic Site Within The Amino-Terminal Signalling Domain Of Sonic Hedgehog Length = 162 Back     alignment and structure
>pdb|2WG4|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog- Interacting Protein Hip And Sonic Hedgehog Without Calcium Length = 155 Back     alignment and structure
>pdb|2WFX|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog- Interacting Protein Hip And Sonic Hedgehog In The Presence Of Calcium Length = 152 Back     alignment and structure
>pdb|3D1M|A Chain A, Crystal Structure Of Sonic Hedgehog Bound To The Third Fniii Domain Of Cdo Length = 168 Back     alignment and structure
>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian Hedgehog N-Terminal Signalling Domain Length = 187 Back     alignment and structure
>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian Hedgehog N- Terminal Signalling Domain Length = 187 Back     alignment and structure
>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal Signalling Domain Length = 187 Back     alignment and structure
>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3 Length = 169 Back     alignment and structure
>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian Hedgehog N- Terminal Signalling Domain Length = 187 Back     alignment and structure
>pdb|2WFQ|A Chain A, Crystal Structure Of The N-terminal Signalling Domain Of Human Dhh Without Calcium Length = 165 Back     alignment and structure
>pdb|2WG3|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog- Interacting Protein Hip And Desert Hedgehog Without Calcium Length = 164 Back     alignment and structure
>pdb|3N1G|B Chain B, Crystal Structure Of Dhhn Bound To Bocfn3 Length = 170 Back     alignment and structure
>pdb|2IBG|E Chain E, Crystal Structure Of Hedgehog Bound To The Fniii Domains Of Ihog Length = 150 Back     alignment and structure
>pdb|1AT0|A Chain A, 17-Kda Fragment Of Hedgehog C-Terminal Autoprocessing Domain Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
3n1g_B170 Desert hedgehog protein; binding sites, calcium, c 1e-51
2ibg_E150 Protein hedgehog, GH03927P; IHOG, fibronectin type 3e-50
3k7i_B187 IHH, HHG-2, indian hedgehog protein; alpha+beta sa 3e-50
1at0_A145 17-hedgehog; developmental signaling molecule, cho 7e-25
1mi8_A158 DNAB intein; all beta-strands, hydrolase; 2.00A {S 2e-10
2jmz_A186 Hypothetical protein MJ0781; unknown function; NMR 1e-08
2lcj_A185 PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi 2e-08
2keq_A139 DNA polymerase III alpha subunit, nucleic acid bin 3e-07
2in0_A139 Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacter 6e-07
2imz_A168 Endonuclease PI-MTUI; N-terminal cysteine sulfinic 5e-06
3nzm_A168 SSP DNAE intein, DNA polymerase III subunit alpha; 1e-05
4e2u_A168 PHO RADA intein; HINT-fold, unknown function; 1.58 1e-05
1am2_A199 MXE GYRA intein; protein splicing; 2.20A {Mycobact 2e-04
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} PDB: 3n1q_B Length = 170 Back     alignment and structure
 Score =  164 bits (417), Expect = 1e-51
 Identities = 71/89 (79%), Positives = 81/89 (91%)

Query: 16  QRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYG 75
           +R KE++N LAI+VMN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYG
Sbjct: 82  ERCKERVNALAIAVMNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYG 141

Query: 76  LLARMAVEAGFDWVYYESRNHIHCSVKTE 104
           LLAR+AVEAGFDWVYYESRNH+H SVK +
Sbjct: 142 LLARLAVEAGFDWVYYESRNHVHVSVKAD 170
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2 Length = 150 Back     alignment and structure
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A* Length = 187 Back     alignment and structure
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1 Length = 145 Back     alignment and structure
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2 Length = 158 Back     alignment and structure
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A Length = 186 Back     alignment and structure
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi} Length = 185 Back     alignment and structure
>2keq_A DNA polymerase III alpha subunit, nucleic acid binding OB-fold tRNA/helicase-type...; intein, DNAE intein, protein splicing; HET: DNA; NMR {Nostoc punctiforme pcc 73102} Length = 139 Back     alignment and structure
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A Length = 139 Back     alignment and structure
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis} Length = 168 Back     alignment and structure
>3nzm_A SSP DNAE intein, DNA polymerase III subunit alpha; disulfide bond, transferase; HET: DNA; 1.55A {Synechocystis SP} PDB: 1zd7_A* 1zde_A* Length = 168 Back     alignment and structure
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A* Length = 168 Back     alignment and structure
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2 Length = 199 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
3k7i_B187 IHH, HHG-2, indian hedgehog protein; alpha+beta sa 100.0
2ibg_E150 Protein hedgehog, GH03927P; IHOG, fibronectin type 100.0
1at0_A145 17-hedgehog; developmental signaling molecule, cho 100.0
3n1g_B170 Desert hedgehog protein; binding sites, calcium, c 100.0
2in0_A139 Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacter 99.87
1mi8_A158 DNAB intein; all beta-strands, hydrolase; 2.00A {S 99.85
4e2u_A168 PHO RADA intein; HINT-fold, unknown function; 1.58 99.85
2imz_A168 Endonuclease PI-MTUI; N-terminal cysteine sulfinic 99.81
1am2_A199 MXE GYRA intein; protein splicing; 2.20A {Mycobact 99.79
2jmz_A186 Hypothetical protein MJ0781; unknown function; NMR 99.79
2lcj_A185 PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi 99.78
2keq_A139 DNA polymerase III alpha subunit, nucleic acid bin 99.47
3nzm_A168 SSP DNAE intein, DNA polymerase III subunit alpha; 99.34
1dfa_A 454 PI-SCEI endonuclease; intein, homing endonuclease, 99.25
1dq3_A 454 Endonuclease; PI-PFUI, intein-encoded, hydrolase; 98.88
2cw8_A 537 Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococ 98.71
1gpp_A237 Endonuclease PI-SCEI; homing, protein splicing; 1. 98.52
1oa8_A133 Ataxin-1; RNA binding, high mobility group homolog 97.89
1lbu_A213 Muramoyl-pentapeptide carboxypeptidase; hydrolase, 97.84
2vo9_A179 EAD500, L-alanyl-D-glutamate peptidase; cell WALL 95.7
1xp2_A179 EAD500, PLY500, L-alanyl-D-glutamate peptidase; hy 95.65
3qve_A139 HMG box-containing protein 1; SGC, HMG box transcr 92.0
1r44_A202 D-alanyl-D-alanine dipeptidase; VANX, E.faecium, h 85.64
2in0_A139 Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacter 84.7
2jmz_A186 Hypothetical protein MJ0781; unknown function; NMR 82.04
1at0_A145 17-hedgehog; developmental signaling molecule, cho 81.72
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A* Back     alignment and structure
Probab=100.00  E-value=8.8e-53  Score=355.19  Aligned_cols=107  Identities=68%  Similarity=1.156  Sum_probs=101.1

Q ss_pred             cccchhhhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCCCCCCCCCCcccceeeeeeEecCCCcchHHHHHhhhhhcCc
Q psy16496          7 NLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGF   86 (245)
Q Consensus         7 ~~~~~r~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~~~~~~~slh~egra~di~~s~~~~~k~g~La~la~~aGf   86 (245)
                      ||||||+|||||++||+.||++||||||||||||||||||++||+++|||||||||||||||||++||||||+||++|||
T Consensus        81 ~tgadR~Mt~Rc~~kL~~La~~V~nqwpGvkLRVtegwde~~hh~~~SLHyEGRAvDIttsdrd~~k~g~LarLAveAGF  160 (187)
T 3k7i_B           81 NTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTKGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGF  160 (187)
T ss_dssp             SSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEECCCSSCCSCTTCGGGGTCEEEEEETTCCGGGHHHHHHHHHHTTC
T ss_pred             CCCcchhhCHHHHHHHHHHHHHHHHhcCCceEEEeecccCCCCCCcccccccceeeEEEecccchhHHHHHHHHHHHcCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEcccceeeeccccccccccccCcc
Q psy16496         87 DWVYYESRNHIHCSVKTETTHVNGKGAG  114 (245)
Q Consensus        87 d~V~~~~r~~ih~~vks~~s~~aak~gg  114 (245)
                      |||+|++++|||||||+|+| .++++||
T Consensus       161 DwV~Y~sr~~IH~SVk~d~~-~~~~~gg  187 (187)
T 3k7i_B          161 DWVYYESKAHVHCSVKSEHS-AAAKTGG  187 (187)
T ss_dssp             SEEEEEETTEEEEECCCSSS-CC-----
T ss_pred             CEEEeccCCeEEEEeccchh-hhhhcCC
Confidence            99999999999999999999 8888775
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2 Back     alignment and structure
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1 Back     alignment and structure
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B Back     alignment and structure
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A Back     alignment and structure
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2 Back     alignment and structure
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A* Back     alignment and structure
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis} Back     alignment and structure
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2 Back     alignment and structure
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A Back     alignment and structure
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi} Back     alignment and structure
>2keq_A DNA polymerase III alpha subunit, nucleic acid binding OB-fold tRNA/helicase-type...; intein, DNAE intein, protein splicing; HET: DNA; NMR {Nostoc punctiforme pcc 73102} Back     alignment and structure
>3nzm_A SSP DNAE intein, DNA polymerase III subunit alpha; disulfide bond, transferase; HET: DNA; 1.55A {Synechocystis SP} PDB: 1zd7_A* 1zde_A* Back     alignment and structure
>1dfa_A PI-SCEI endonuclease; intein, homing endonuclease, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: b.86.1.2 d.95.2.2 d.95.2.2 PDB: 1lws_A 1lwt_A 1vde_A 1ef0_A 1um2_A 1jva_A Back     alignment and structure
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2 Back     alignment and structure
>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis} PDB: 2cw7_A Back     alignment and structure
>1gpp_A Endonuclease PI-SCEI; homing, protein splicing; 1.35A {Saccharomyces cerevisiae} SCOP: b.86.1.2 Back     alignment and structure
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1 Back     alignment and structure
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1 Back     alignment and structure
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5 Back     alignment and structure
>3qve_A HMG box-containing protein 1; SGC, HMG box transcription factor 1, HBP1, AXH domain, struc genomics consortium, transcription; 2.04A {Homo sapiens} PDB: 1v06_A Back     alignment and structure
>1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} SCOP: d.65.1.4 Back     alignment and structure
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A Back     alignment and structure
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A Back     alignment and structure
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d3d1ma1148 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus mus 5e-60
d1at0a_145 b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila mela 8e-13
d1mi8a_158 b.86.1.2 (A:) DnaB intein {Synechocystis sp. pcc 6 1e-08
d1am2a_199 b.86.1.2 (A:) GyrA intein {Mycobacterium xenopi [T 2e-08
d1oa8a_128 b.145.1.1 (A:) Ataxin-1 {Human (Homo sapiens) [Tax 3e-05
d1dq3a1168 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archa 3e-04
d1lbua2130 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-ter 7e-04
>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090]} Length = 148 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hedgehog/DD-peptidase
superfamily: Hedgehog/DD-peptidase
family: Hedgehog (development protein), N-terminal signaling domain
domain: Sonic hedgehog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  184 bits (468), Expect = 5e-60
 Identities = 72/88 (81%), Positives = 81/88 (92%)

Query: 16  QRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYG 75
           QR K+KLN LAISVMN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG
Sbjct: 61  QRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 120

Query: 76  LLARMAVEAGFDWVYYESRNHIHCSVKT 103
           +LAR+AVEAGFDWVYYES+ HIHCSVK 
Sbjct: 121 MLARLAVEAGFDWVYYESKAHIHCSVKA 148
>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145 Back     information, alignment and structure
>d1mi8a_ b.86.1.2 (A:) DnaB intein {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 158 Back     information, alignment and structure
>d1am2a_ b.86.1.2 (A:) GyrA intein {Mycobacterium xenopi [TaxId: 1789]} Length = 199 Back     information, alignment and structure
>d1oa8a_ b.145.1.1 (A:) Ataxin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure
>d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 168 Back     information, alignment and structure
>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal catalytic domain {Streptomyces albus G [TaxId: 1962]} Length = 130 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d3d1ma1148 Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090 100.0
d1at0a_145 Hedgehog {Fruit fly (Drosophila melanogaster) [Tax 99.95
d1mi8a_158 DnaB intein {Synechocystis sp. pcc 6803 [TaxId: 11 99.77
d1oa8a_128 Ataxin-1 {Human (Homo sapiens) [TaxId: 9606]} 99.65
d1am2a_199 GyrA intein {Mycobacterium xenopi [TaxId: 1789]} 99.56
d1dq3a1168 PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxI 99.5
d1lbua2130 Zn2+ DD-carboxypeptidase C-terminal catalytic doma 98.84
d1gppa_229 VMA1-derived endonuclease (VDE) PI-Scei intein {Ba 98.22
d2vo9a1148 L-alanyl-D-glutamate peptidase Ply {Listeria phage 96.77
d1r44a_202 D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium 88.6
>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hedgehog/DD-peptidase
superfamily: Hedgehog/DD-peptidase
family: Hedgehog (development protein), N-terminal signaling domain
domain: Sonic hedgehog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-54  Score=347.24  Aligned_cols=98  Identities=74%  Similarity=1.220  Sum_probs=96.5

Q ss_pred             ccccchhhhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCCCCCCCCCCcccceeeeeeEecCCCcchHHHHHhhhhhcC
Q psy16496          6 TNLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAG   85 (245)
Q Consensus         6 ~~~~~~r~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~~~~~~~slh~egra~di~~s~~~~~k~g~La~la~~aG   85 (245)
                      .+|||||+||||||+|||.||++||||||||||||||||||++||+++|||||||||||||||||++||||||+||++||
T Consensus        51 e~tgadR~Mt~Rck~kLn~LA~~Vmn~w~gvkLrV~eaWde~~~h~~~SLHyEGRAvdittsd~d~sk~~~Larlav~AG  130 (148)
T d3d1ma1          51 ENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAG  130 (148)
T ss_dssp             TSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEESSCCSCCSCTTCGGGGTCEEEEEETTCCGGGHHHHHHHHHHTT
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHhCCCceEEEEeeeccCCCcCcccccccceeEEEEecCCCHHHHHHHHHHHHHcC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEcccceeeecccc
Q psy16496         86 FDWVYYESRNHIHCSVKT  103 (245)
Q Consensus        86 fd~V~~~~r~~ih~~vks  103 (245)
                      ||||+|++|+||||||||
T Consensus       131 FDWV~Yesr~hIh~SVks  148 (148)
T d3d1ma1         131 FDWVYYESKAHIHCSVKA  148 (148)
T ss_dssp             CSEEEEEETTEEEEECCC
T ss_pred             CCEEEeccCceEEEEecC
Confidence            999999999999999996
>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1mi8a_ b.86.1.2 (A:) DnaB intein {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1oa8a_ b.145.1.1 (A:) Ataxin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1am2a_ b.86.1.2 (A:) GyrA intein {Mycobacterium xenopi [TaxId: 1789]} Back     information, alignment and structure
>d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal catalytic domain {Streptomyces albus G [TaxId: 1962]} Back     information, alignment and structure
>d1gppa_ b.86.1.2 (A:) VMA1-derived endonuclease (VDE) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2vo9a1 d.65.1.5 (A:1-148) L-alanyl-D-glutamate peptidase Ply {Listeria phage A500 [TaxId: 40522]} Back     information, alignment and structure
>d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure