Psyllid ID: psy16508

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
MEKKKKSDSSNDLSVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVLRQYDLSVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVLRQVAETPQEIPFLSILQHLLRIDPKEAVSDIIWDTAETLVHRATLLESRQDATKLLRSPSLQNKLCCHGHRGFYLRNGLSYLLILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRKELLNFTEDMGFLEEATKLTKLGQA
ccccccccccccEEcccccHHHHHHHHHHHHHcccHHHHcccccHHHHHHccccHHHHHHHHHHHcHHccHHHHHccccccccccHHHHHHHHHHHccccccccccHHcccccccccccccccccccccccHHHHHHccHHcHHHHHHHHccHHHHHHHccccccccccccccccccEEEEEcccHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHccHHHcccHHccccHHHHHcccccccc
cccccccccccccEEEEEccccccccHHHHHHccccccccccccHEHHHHHcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHccccHHHHHHcccHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHccHHHccHHHHHHHHHHcccHHHHHHHHHHcccHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHccccccccEEEEEHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHcccHHHHHcHHHHHHHcHHHcc
mekkkksdssndlsVQLDvfdeqkesdeaqilgapdgvdlnsHLDVFYAVLRQYDLSvqldvfdeqkesdeaqilgapdgvdlnsHLDVFYAVLRQVaetpqeipFLSILQHLlridpkeavSDIIWDTAETLVHRATLLESRQDATKLlrspslqnklcchghrgfylRNGLSYLLILLLDGKRSLNVNIFLKQFRSSNEDIIHLIkngdhdeigTEKLRGLLKIlpqldelemlrnfdgdksrlGNAEKFLLQLIQVPNYKLRIESMLLKEEFatnmsylepsinsmiVAGEDLMSNKALQEVLYMVICAgnflnsggyagnaagVKLSSLQKLtdirankpgmnLIHYVALQAEKKRKELLNFTEDMGFLEEATKLTKLGQA
mekkkksdssndlsvQLDVFDEQKESDEAQIlgapdgvdlNSHLDVFYAVLRQYDLSVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVLRQVAETPQEIPFLSILQHLLRIDPKEAVSDIIWDTAETLVHRATLLESRQDATKLLRSPSLQNKLCCHGHRGFYLRNGLSYLLILLLDGKRSLNVNIFLKQFRSSNEDIIHLIkngdhdeigTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRKELLNFTEDMGFleeatkltklgqa
MEkkkksdssndlsVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVLRQYDLSVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVLRQVAETPQEIPFLSILQHLLRIDPKEAVSDIIWDTAETLVHRATLLESRQDATKLLRSPSLQNKLCCHGHRGFYlrnglsyllilllDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRKELLNFTEDMGFLEEATKLTKLGQA
*******************************LGAPDGVDLNSHLDVFYAVLRQYDLSVQLDVFDE*******QILGAPDGVDLNSHLDVFYAVLRQVAETPQEIPFLSILQHLLRIDPKEAVSDIIWDTAETLVHRATLLESRQDATKLLRSPSLQNKLCCHGHRGFYLRNGLSYLLILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRKELLNFTEDMGFL************
*************SVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVLRQYDLSVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVL****************QHLLRIDPKEAVSDIIWDTAETLVHRATLLESRQDATKLL******************************LDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRKELLNFTEDMGFLEEATKLTK****
*************SVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVLRQYDLSVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVLRQVAETPQEIPFLSILQHLLRIDPKEAVSDIIWDTAETLVHRATLLESRQDATKLLRSPSLQNKLCCHGHRGFYLRNGLSYLLILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRKELLNFTEDMGFLEEATKLTKLGQA
***********DLSVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVLRQYDLSVQLDVFDEQ*********GAPDGVDLNSHLDVFYAVLRQVAETPQEIPFLSILQHLLRIDPKEAVSDIIWDTAETLVHRATLLESRQDATKLLRSPSLQNK***************SYLLILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRKELLNFTEDMGFLEEATKLT*****
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MEKKKKSDSSNDLSVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVLRQYDLSVQLDVFDEQKESDEAQILGAPDGVDLNSHLDVFYAVLRQVAETPQEIPFLSILQHLLRIDPKEAVSDIIWDTAETLVHRATLLESRQDATKLLRSPSLQNKLCCHGHRGFYLRNGLSYLLILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRKELLNFTEDMGFLEEATKLTKLGQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query385 2.2.26 [Sep-21-2011]
Q9C0D6 1143 FH2 domain-containing pro yes N/A 0.527 0.177 0.497 6e-51
Q3ULZ2 1149 FH2 domain-containing pro yes N/A 0.527 0.176 0.487 9e-51
Q6NTV6 1099 Inverted formin-2 OS=Xeno N/A N/A 0.501 0.175 0.398 4e-36
Q27J81 1249 Inverted formin-2 OS=Homo no N/A 0.496 0.152 0.398 5e-36
Q0GNC1 1273 Inverted formin-2 OS=Mus no N/A 0.501 0.151 0.378 2e-35
Q0IHV1 1380 Inverted formin-2 OS=Xeno no N/A 0.501 0.139 0.393 3e-35
Q9FLQ7 1649 Formin-like protein 20 OS yes N/A 0.524 0.122 0.321 5e-28
Q6K8Z4 1385 Formin-like protein 7 OS= yes N/A 0.524 0.145 0.321 2e-26
Q9C6S1 1230 Formin-like protein 14 OS no N/A 0.524 0.164 0.316 3e-26
Q9LVN1 1266 Formin-like protein 13 OS no N/A 0.524 0.159 0.297 1e-25
>sp|Q9C0D6|FHDC1_HUMAN FH2 domain-containing protein 1 OS=Homo sapiens GN=FHDC1 PE=1 SV=2 Back     alignment and function desciption
 Score =  201 bits (512), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 101/203 (49%), Positives = 141/203 (69%)

Query: 178 ILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLR 237
           I +LD KRS+N+ IFLKQF+ S   I+  I  G  +  G+E LR  LK LP+ +E++ L+
Sbjct: 167 ITILDAKRSMNIGIFLKQFKKSPRSIVEDIHQGKSEHYGSETLREFLKFLPESEEVKKLK 226

Query: 238 NFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLM 297
            F GD S+L  A+ FL  LIQVPNY LRIE+M+LK+EF  + S L   I  +  A ++LM
Sbjct: 227 AFSGDVSKLSLADSFLYGLIQVPNYSLRIEAMVLKKEFLPSCSSLYTDITVLRTAIKELM 286

Query: 298 SNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAE 357
           S + L  +L++V+ AGN +N+GGYAGNA G KLSSL KL D +ANKPGMNL+H+VA +A+
Sbjct: 287 SCEELHSILHLVLQAGNIMNAGGYAGNAVGFKLSSLLKLADTKANKPGMNLLHFVAQEAQ 346

Query: 358 KKRKELLNFTEDMGFLEEATKLT 380
           KK   LLNF+E +  +++  +L+
Sbjct: 347 KKDTILLNFSEKLHHVQKTARLS 369

Homo sapiens (taxid: 9606)
>sp|Q3ULZ2|FHDC1_MOUSE FH2 domain-containing protein 1 OS=Mus musculus GN=Fhdc1 PE=2 SV=3 Back     alignment and function description
>sp|Q6NTV6|INF2_XENLA Inverted formin-2 OS=Xenopus laevis GN=inf2 PE=2 SV=1 Back     alignment and function description
>sp|Q27J81|INF2_HUMAN Inverted formin-2 OS=Homo sapiens GN=INF2 PE=1 SV=2 Back     alignment and function description
>sp|Q0GNC1|INF2_MOUSE Inverted formin-2 OS=Mus musculus GN=Inf2 PE=1 SV=1 Back     alignment and function description
>sp|Q0IHV1|INF2_XENTR Inverted formin-2 OS=Xenopus tropicalis GN=inf2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FLQ7|FH20_ARATH Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3 Back     alignment and function description
>sp|Q6K8Z4|FH7_ORYSJ Formin-like protein 7 OS=Oryza sativa subsp. japonica GN=FH7 PE=2 SV=2 Back     alignment and function description
>sp|Q9C6S1|FH14_ARATH Formin-like protein 14 OS=Arabidopsis thaliana GN=FH14 PE=3 SV=3 Back     alignment and function description
>sp|Q9LVN1|FH13_ARATH Formin-like protein 13 OS=Arabidopsis thaliana GN=FH13 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
328717469 1644 PREDICTED: hypothetical protein LOC10015 0.501 0.117 0.866 8e-99
307213197 1806 FH2 domain-containing protein 1 [Harpegn 0.527 0.112 0.857 7e-98
307181425 1797 FH2 domain-containing protein 1 [Campono 0.527 0.112 0.857 1e-97
340714225 1813 PREDICTED: hypothetical protein LOC10064 0.503 0.107 0.852 6e-97
350417242 1822 PREDICTED: hypothetical protein LOC10074 0.503 0.106 0.852 8e-97
328791069 1814 PREDICTED: LOW QUALITY PROTEIN: hypothet 0.527 0.111 0.847 2e-96
242020334 1630 conserved hypothetical protein [Pediculu 0.527 0.124 0.842 4e-96
383863849 1801 PREDICTED: uncharacterized protein LOC10 0.527 0.112 0.842 4e-96
345484078 1818 PREDICTED: hypothetical protein LOC10011 0.527 0.111 0.842 7e-96
332026611 1397 FH2 domain-containing protein 1 [Acromyr 0.527 0.145 0.832 2e-92
>gi|328717469|ref|XP_001948092.2| PREDICTED: hypothetical protein LOC100159987 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 176/203 (86%), Positives = 189/203 (93%)

Query: 178 ILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLR 237
           I+LLDGKRSLNVNIFLKQFRSSNEDII LI++GDHD+IG EKLRGLLKILP+LDELEMLR
Sbjct: 456 IVLLDGKRSLNVNIFLKQFRSSNEDIIQLIRDGDHDDIGAEKLRGLLKILPELDELEMLR 515

Query: 238 NFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLM 297
            F+GDK++LGNAEKFLLQLI +PNYKLRIESMLLKEEFA+NMSYLEPSINSMIVAGEDLM
Sbjct: 516 AFEGDKTKLGNAEKFLLQLIDIPNYKLRIESMLLKEEFASNMSYLEPSINSMIVAGEDLM 575

Query: 298 SNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAE 357
           +NK  QEVLYMVICAGNFLN GGYAG AAGVKLSSLQKLTDIRANKPGMNLIHYVALQAE
Sbjct: 576 TNKRFQEVLYMVICAGNFLNFGGYAGKAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAE 635

Query: 358 KKRKELLNFTEDMGFLEEATKLT 380
           K RK+LL F E+M  LEEATK T
Sbjct: 636 KNRKDLLKFPEEMSVLEEATKTT 658

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307213197|gb|EFN88694.1| FH2 domain-containing protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307181425|gb|EFN69020.1| FH2 domain-containing protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340714225|ref|XP_003395631.1| PREDICTED: hypothetical protein LOC100649329 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350417242|ref|XP_003491326.1| PREDICTED: hypothetical protein LOC100742673 [Bombus impatiens] Back     alignment and taxonomy information
>gi|328791069|ref|XP_003251512.1| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC408821 [Apis mellifera] Back     alignment and taxonomy information
>gi|242020334|ref|XP_002430610.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515782|gb|EEB17872.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|383863849|ref|XP_003707392.1| PREDICTED: uncharacterized protein LOC100883788 [Megachile rotundata] Back     alignment and taxonomy information
>gi|345484078|ref|XP_001600053.2| PREDICTED: hypothetical protein LOC100115285 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332026611|gb|EGI66720.1| FH2 domain-containing protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
FB|FBgn0053556 1717 form3 "formin 3" [Drosophila m 0.664 0.149 0.652 4.7e-93
UNIPROTKB|E1BWB9 1049 Gga.55708 "Uncharacterized pro 0.506 0.185 0.405 4.2e-53
UNIPROTKB|Q27J81 1249 INF2 "Inverted formin-2" [Homo 0.490 0.151 0.396 8.6e-50
MGI|MGI:1917685 1273 Inf2 "inverted formin, FH2 and 0.490 0.148 0.380 5e-49
UNIPROTKB|E2R006 1109 FHDC1 "Uncharacterized protein 0.516 0.179 0.507 1.4e-47
UNIPROTKB|F1RSA9 972 FHDC1 "Uncharacterized protein 0.516 0.204 0.497 2.3e-46
UNIPROTKB|F1MQ88 1045 FHDC1 "Uncharacterized protein 0.516 0.190 0.497 3.7e-46
MGI|MGI:2684972 1149 Fhdc1 "FH2 domain containing 1 0.516 0.173 0.492 6.1e-46
UNIPROTKB|Q9C0D6 1143 FHDC1 "FH2 domain-containing p 0.516 0.174 0.497 9.8e-46
UNIPROTKB|F1NBT1 1130 FHDC1 "Uncharacterized protein 0.516 0.176 0.487 2e-45
FB|FBgn0053556 form3 "formin 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 812 (290.9 bits), Expect = 4.7e-93, Sum P(2) = 4.7e-93
 Identities = 169/259 (65%), Positives = 198/259 (76%)

Query:   122 VSDIIWDTAETLVHRATLLESRQDATKLLRSPSLQNKLCCHGHRGFYXXXXXXXXXXXXX 181
             + DI W+  E L    T   S Q + KL R  S Q     +G                  
Sbjct:   457 MQDIDWNEMEGLFCLQTA--SAQGSPKLGRDGS-QAAAGSNGCDTLDRKSKKESTEITLL 513

Query:   182 DGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDG 241
             DGKRSLNVNIFLKQFR+SN+DII LI+ G H+EIG E+LRGLLKI+P++DEL+ML+ F+G
Sbjct:   514 DGKRSLNVNIFLKQFRTSNDDIIQLIRQGAHEEIGAERLRGLLKIMPEVDELDMLKGFNG 573

Query:   242 DKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKA 301
             DK+RLGNAEKFLLQL++VPNYKLRIESMLLKEEFA N++YLEP INSM+ AG+DL++NK 
Sbjct:   574 DKARLGNAEKFLLQLLEVPNYKLRIESMLLKEEFAANVAYLEPCINSMLYAGDDLLNNKT 633

Query:   302 LQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRK 361
             LQEVLYMV+ AGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIH+VALQAEK+  
Sbjct:   634 LQEVLYMVVVAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHFVALQAEKRNP 693

Query:   362 ELLNFTEDMGFLEEATKLT 380
             ELL FT  +  LE A+K T
Sbjct:   694 ELLQFTGQLSNLESASKTT 712
GO:0003779 "actin binding" evidence=IEA;ISS
GO:0007424 "open tracheal system development" evidence=NAS
GO:0030036 "actin cytoskeleton organization" evidence=IEA
GO:0035147 "branch fusion, open tracheal system" evidence=IMP
UNIPROTKB|E1BWB9 Gga.55708 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q27J81 INF2 "Inverted formin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1917685 Inf2 "inverted formin, FH2 and WH2 domain containing" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R006 FHDC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RSA9 FHDC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQ88 FHDC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2684972 Fhdc1 "FH2 domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9C0D6 FHDC1 "FH2 domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBT1 FHDC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
pfam02181372 pfam02181, FH2, Formin Homology 2 Domain 2e-56
smart00498 392 smart00498, FH2, Formin Homology 2 Domain 2e-35
pfam06367197 pfam06367, Drf_FH3, Diaphanous FH3 Domain 1e-07
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain Back     alignment and domain information 
 Score =  189 bits (481), Expect = 2e-56
 Identities = 73/200 (36%), Positives = 125/200 (62%)

Query: 180 LLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNF 239
           +LD KRS N+ I L++ +   E+I+  I   D   +G E L  LLK+ P  +EL+ L+ +
Sbjct: 77  VLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESVLGLELLENLLKMAPTKEELKKLKEY 136

Query: 240 DGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSN 299
            GD S+LG AE+FLL+L ++P  + R+E++L K  F   +  L+PS+ ++  A E+L  +
Sbjct: 137 KGDPSKLGRAEQFLLELSKIPRLEERLEALLFKSTFEEEVEELKPSLETLEAASEELRES 196

Query: 300 KALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKK 359
           +  +++L +++  GN++NSG   GNA G KLSSL KL+D ++      L+HY+     +K
Sbjct: 197 RKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLKLSDTKSTDNKTTLLHYLVKIIREK 256

Query: 360 RKELLNFTEDMGFLEEATKL 379
             +LL+F+ ++  +E+A K+
Sbjct: 257 LPDLLDFSSELSHVEKAAKV 276

Length = 372
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain Back     alignment and domain information
>gnl|CDD|219000 pfam06367, Drf_FH3, Diaphanous FH3 Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 385
KOG1924|consensus 1102 100.0
smart00498 432 FH2 Formin Homology 2 Domain. FH proteins control 100.0
PF02181370 FH2: Formin Homology 2 Domain; InterPro: IPR015425 100.0
KOG1923|consensus 830 100.0
KOG1925|consensus 817 99.96
KOG1922|consensus 833 99.95
PF06367197 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR01047 99.6
>KOG1924|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-76  Score=608.59  Aligned_cols=368  Identities=28%  Similarity=0.425  Sum_probs=327.7

Q ss_pred             hhhHhHhhhhhhhhHhhhhcCCCccccccch----------hHHHHH--hcCCCccccchhhhhhhhhhHHHHhcCCCCC
Q psy16508         14 SVQLDVFDEQKESDEAQILGAPDGVDLNSHL----------DVFYAV--LRQYDLSVQLDVFDEQKESDEAQILGAPDGV   81 (385)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~hl----------d~l~~L--~~~~~l~iql~~fee~~~eD~~e~~~~~~~i   81 (385)
                      .+|++|+|||.   +|+++++|+|+|||+||          ++|+.|  ++|++++||++||+||+++|.+|+.+|+++|
T Consensus       301 ~~~l~vacmq~---INal~t~p~dldfRlhlR~E~mr~gL~~~l~~l~~i~n~~ldvqlkvfdE~~e~Dl~el~~rledi  377 (1102)
T KOG1924|consen  301 KQQLQVACMQF---INALVTSPSDLDFRLHLRSEFMRDGLHKYLPDLTEINNDILDVQLKVFDEHKEDDLEELSGRLEDI  377 (1102)
T ss_pred             hHHHHHHHHHH---HHHhcCCHHHhhHHHHHHHHHHHHhHHHHHHHhhhhccHHHHHHHHHHhhhhhhhHHHHHhHHHhh
Confidence            78999999998   99999999999999999          888899  9999999999999999999999999999995


Q ss_pred             --CCCCHHHHHHHHHhhccCCCCCchhhhHHHhhhccCCCCccccchhhhhhhhhhhhhhhhch----------------
Q psy16508         82 --DLNSHLDVFYAVLRQVAETPQEIPFLSILQHLLRIDPKEAVSDIIWDTAETLVHRATLLESR----------------  143 (385)
Q Consensus        82 --d~~~~~~vf~~l~~~v~~t~~~~~~lsiLq~lL~i~P~~~lk~l~W~~Le~~v~k~tlw~~~----------------  143 (385)
                        +|++.++||+.|+|+|++|.+++||||||||+++||.+...++.||..|++|+.+.++....                
T Consensus       378 r~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~yr~~l~id~~  457 (1102)
T KOG1924|consen  378 RAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFKYRFRLDIDLT  457 (1102)
T ss_pred             hhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhcccCcHH
Confidence              99999999999999999999999999999999999999999999999999999887654310                


Q ss_pred             ----------------hhH---Hhhc------------------------cccc--c--cccc---------c---c--c
Q psy16508        144 ----------------QDA---TKLL------------------------RSPS--L--QNKL---------C---C--H  162 (385)
Q Consensus       144 ----------------~~~---~~~l------------------------~~~~--~--~~~~---------~---~--~  162 (385)
                                      +.+   .+.+                        +...  +  ++..         .   +  .
T Consensus       458 ~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~al~s~~~~~~~~~~iP~PP~~pp~g  537 (1102)
T KOG1924|consen  458 ELIDKMVDKAKAEESEQKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQALSSPSQLLPIDGGIPPPPPLPPTG  537 (1102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhhhccCcccCCCCCCCCCCCCCCCCCC
Confidence                            000   0000                        0000  0  0000         0   0  0


Q ss_pred             ---------------C----------------CC---------C---c-------------c----------cC------
Q psy16508        163 ---------------G----------------HR---------G---F-------------Y----------LR------  170 (385)
Q Consensus       163 ---------------~----------------~~---------~---~-------------~----------~p------  170 (385)
                                     +                |+         |   +             |          +|      
T Consensus       538 G~g~pppPppPPlpggag~PPPPpplPg~aG~PPpPppppg~~gppPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~gLkpK  617 (1102)
T KOG1924|consen  538 GTGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGGGGPPPPPPPGGFLGGPPPPPPPGMFPMAPVLPFGLKPK  617 (1102)
T ss_pred             CCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCcccccccCCCCCCcc
Confidence                           0                00         0   0             0          00      


Q ss_pred             ------------------------------------------------------------------C--CCcccceeecc
Q psy16508        171 ------------------------------------------------------------------N--GLSYLLILLLD  182 (385)
Q Consensus       171 ------------------------------------------------------------------~--~~k~k~vsvLd  182 (385)
                                                                                        +  .|+.++..|+|
T Consensus       618 K~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~ilD  697 (1102)
T KOG1924|consen  618 KVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRILD  697 (1102)
T ss_pred             ccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhheecc
Confidence                                                                              1  22336778999


Q ss_pred             hhhhhHHHHhhccCCCCHHHHHHHHHcCCCCCCChhHHHHHHHhCCCHHHHHHHhcccCCCCCCChHHHHHHHHhCCCCH
Q psy16508        183 GKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQVPNY  262 (385)
Q Consensus       183 ~kraqNi~I~L~~lk~s~eei~~aI~~~D~~~L~~e~l~~L~~~lPt~eE~~~l~~~~~d~~~L~~aEqF~~~l~~ip~~  262 (385)
                      +|.|||++|+|++|++|++||+.+|+++|+++|+...|++|++++|.+|.+..|++++...+.|.++|||...|+.|+++
T Consensus       698 sKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL  777 (1102)
T KOG1924|consen  698 SKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRL  777 (1102)
T ss_pred             hHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhccccCCCCCCCccceeecccccccccccCC
Q psy16508        263 KLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRAN  342 (385)
Q Consensus       263 ~~Rl~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~IL~iGNylN~gs~~g~A~GFkLssL~KL~~tKs~  342 (385)
                      +.||.+++||.+|.+.+++|+|.+.++.+||++||+|++|.++|++||.+|||||+||++.+|+||.+++|+||.+|||.
T Consensus       778 ~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKsa  857 (1102)
T KOG1924|consen  778 RPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKSA  857 (1102)
T ss_pred             ChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcChHHHHHHHHHHccccccchHhhhhhHHHhhccCcccC
Q psy16508        343 KPGMNLIHYVALQAEKKRKELLNFTEDMGFLEEATKLTKLGQ  384 (385)
Q Consensus       343 d~k~TLLh~l~~~v~~~~Pell~f~~eL~~v~~Askvs~e~~  384 (385)
                      |+++|||||+++.++++||+.++|++||+||.+|||||.+.+
T Consensus       858 Dqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~i  899 (1102)
T KOG1924|consen  858 DQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEI  899 (1102)
T ss_pred             chhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHH
Confidence            999999999999999999999999999999999999997643

>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>KOG1923|consensus Back     alignment and domain information
>KOG1925|consensus Back     alignment and domain information
>KOG1922|consensus Back     alignment and domain information
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
2z6e_A 419 Crystal Structure Of Human Daam1 Fh2 Length = 419 4e-24
2j1d_G 483 Crystallization Of Hdaam1 C-Terminal Fragment Lengt 5e-24
3o4x_E 467 Crystal Structure Of Complex Between Amino And Carb 3e-20
1v9d_A 340 Crystal Structure Of The Core Fh2 Domain Of Mouse M 3e-20
3obv_E 457 Autoinhibited Formin Mdia1 Structure Length = 457 4e-20
4eah_A 402 Crystal Structure Of The Formin Homology 2 Domain O 6e-20
2bnx_A386 Crystal Structure Of The Dimeric Regulatory Domain 4e-04
3obv_A327 Autoinhibited Formin Mdia1 Structure Length = 327 4e-04
3o4x_A330 Crystal Structure Of Complex Between Amino And Carb 4e-04
2bap_B317 Crystal Structure Of The N-Terminal Mdia1 Armadillo 5e-04
1z2c_B383 Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With 5e-04
3eg5_B383 Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W 6e-04
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 119/200 (59%), Gaps = 3/200 (1%)
Query: 182 DGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDE-IGTEKLRGLLKILPQLDELEMLRNFD 240
           DG+R+ N NI L + + SN++I   I   D  E +  + L  LLK +P+  ++++L    
Sbjct: 96  DGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHK 155
Query: 241 GDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNK 300
            +  R+  A++FL ++ ++ +Y+ R++S+  K++FA  ++ ++P + ++    E++  + 
Sbjct: 156 HELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSG 215
Query: 301 ALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRAN-KPGMNLIHYVALQAEKK 359
           AL+++L +V+  GN++N G   GNA G K+SSL K+ D +++    + L+HY+    E K
Sbjct: 216 ALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENK 274
Query: 360 RKELLNFTEDMGFLEEATKL 379
              +LN  E++  + +A K+
Sbjct: 275 YPSVLNLNEELRDIPQAAKV 294
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483 Back     alignment and structure
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467 Back     alignment and structure
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340 Back     alignment and structure
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457 Back     alignment and structure
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402 Back     alignment and structure
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of Mouse Diaphaneous-Related Formin (Drf), Mdia1 Length = 386 Back     alignment and structure
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure Length = 327 Back     alignment and structure
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 330 Back     alignment and structure
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat Region And Dimerisation Domain In Complex With The Mdia1 Autoregulatory Domain (Dad) Length = 317 Back     alignment and structure
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 383 Back     alignment and structure
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 383 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
1v9d_A 340 Diaphanous protein homolog 1; helix bundle, protei 1e-69
3obv_E 457 Protein diaphanous homolog 1; autoinhibition, acti 1e-67
2j1d_G 483 DAAM1, disheveled-associated activator of morphoge 4e-61
1ux5_A 411 BNI1 protein; structural protein, FH2 actin cytosk 6e-54
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 1e-14
2bnx_A386 Diaphanous protein homolog 1; autoinhibition, acti 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340 Back     alignment and structure
 Score =  221 bits (564), Expect = 1e-69
 Identities = 54/202 (26%), Positives = 112/202 (55%)

Query: 178 ILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLR 237
           + +LD K + N++IFL  FR   ++I ++I   +   +    ++ L+K +P+ ++L+ML 
Sbjct: 9   LKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLS 68

Query: 238 NFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLM 297
               +   L  +E+F + +  VP  + R+ ++L K +F+  +  ++P I S+  A E+L 
Sbjct: 69  ELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELR 128

Query: 298 SNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAE 357
            ++    +L + +  GN++N+G     A G  +S L KL D ++    M L+H++A   E
Sbjct: 129 KSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCE 188

Query: 358 KKRKELLNFTEDMGFLEEATKL 379
               E+L F +++  +E+A+++
Sbjct: 189 NDHPEVLKFPDELAHVEKASRV 210
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457 Back     alignment and structure
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411 Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} PDB: 1z2c_B* Length = 383 Back     alignment and structure
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Length = 386 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
3obv_E 457 Protein diaphanous homolog 1; autoinhibition, acti 100.0
2j1d_G 483 DAAM1, disheveled-associated activator of morphoge 100.0
4eah_A 402 Formin-like protein 3, actin, alpha skeletal muscl 100.0
1v9d_A 340 Diaphanous protein homolog 1; helix bundle, protei 100.0
1ux5_A 411 BNI1 protein; structural protein, FH2 actin cytosk 100.0
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 99.82
2bnx_A386 Diaphanous protein homolog 1; autoinhibition, acti 99.79
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 98.37
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Back     alignment and structure
Probab=100.00  E-value=9.7e-59  Score=474.76  Aligned_cols=268  Identities=21%  Similarity=0.386  Sum_probs=238.0

Q ss_pred             ccCCCCccccchhhhhhhh-hhhhhhhhchhhHHhhccc----ccccccccccCCC----C-------cccCCCCcccce
Q psy16508        115 RIDPKEAVSDIIWDTAETL-VHRATLLESRQDATKLLRS----PSLQNKLCCHGHR----G-------FYLRNGLSYLLI  178 (385)
Q Consensus       115 ~i~P~~~lk~l~W~~Le~~-v~k~tlw~~~~~~~~~l~~----~~~~~~~~~~~~~----~-------~~~p~~~k~k~v  178 (385)
                      .++|+.++|+++|++|... +...|+|.+.++.  .+..    ..++..|+.....    .       ++.+..++++++
T Consensus         3 ~~~P~~~mK~l~W~ki~~~~~~~~t~W~~~~e~--~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v   80 (457)
T 3obv_E            3 VYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKED--RFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKEL   80 (457)
T ss_dssp             CCCCSSCBCCCCCCEECTTTTCSSSSGGGCCGG--GGCCTTHHHHHHHHTBCC-----------------------CCCC
T ss_pred             CCCCCCCCcCCCceeCCccccCCCceeeeCccc--cccChhHHHHHHHHhcccccccccccccccccccccccccCCcee
Confidence            4689999999999999853 3467999986543  1211    1235555532110    0       111234677899


Q ss_pred             eecchhhhhHHHHhhccCCCCHHHHHHHHHcCCCCCCChhHHHHHHHhCCCHHHHHHHhcccCCCCCCChHHHHHHHHhC
Q psy16508        179 LLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQ  258 (385)
Q Consensus       179 svLd~kraqNi~I~L~~lk~s~eei~~aI~~~D~~~L~~e~l~~L~~~lPt~eE~~~l~~~~~d~~~L~~aEqF~~~l~~  258 (385)
                      +|||+||||||+|+|++|++|+++|+++|++||.+.|+.+.|+.|++++||++|++.|++|.++.+.|+++|||++.|+.
T Consensus        81 ~lLD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~~~L~~~EqF~~~l~~  160 (457)
T 3obv_E           81 KVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGT  160 (457)
T ss_dssp             SSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSGGGSCHHHHHHHHHTS
T ss_pred             EecCHHHHhHHHHHHhccCCCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhccccCCCCCCCccceeeccccccccc
Q psy16508        259 VPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTD  338 (385)
Q Consensus       259 ip~~~~Rl~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~IL~iGNylN~gs~~g~A~GFkLssL~KL~~  338 (385)
                      ||+|..||+||+|+.+|++.+.++.+.+..+..||++|++|++|+.+|++||++|||||+|+++|+|+||+|+||.||.+
T Consensus       161 Ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d  240 (457)
T 3obv_E          161 VPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRD  240 (457)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcChHHHHHHHHHHccccccchHhhhhhHHHhhccCcccC
Q psy16508        339 IRANKPGMNLIHYVALQAEKKRKELLNFTEDMGFLEEATKLTKLGQ  384 (385)
Q Consensus       339 tKs~d~k~TLLh~l~~~v~~~~Pell~f~~eL~~v~~Askvs~e~~  384 (385)
                      ||++|+++||||||+++++++||++++|++||++|..|++||++++
T Consensus       241 ~Ks~d~k~TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakvs~~~l  286 (457)
T 3obv_E          241 TKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENL  286 (457)
T ss_dssp             CBCSSTTCBHHHHHHHHHHHHCGGGGGHHHHCTTHHHHTTCCHHHH
T ss_pred             hhcCCCCccHHHHHHHHHHHcCccccCChhhhhhHHhhccCCHHHH
Confidence            9999999999999999999999999999999999999999999875
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Back     alignment and structure
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus} Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* Back     alignment and structure
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Back     alignment and structure
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 385
d1v9da_ 332 a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 3e-55
d1ux5a_ 411 a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces 7e-42
d2bnxa1343 a.118.1.23 (A:133-475) Diaphanous protein homolog 1e-17
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 Back     information, alignment and structure

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  182 bits (464), Expect = 3e-55
 Identities = 54/203 (26%), Positives = 113/203 (55%)

Query: 178 ILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLR 237
           + +LD K + N++IFL  FR   ++I ++I   +   +    ++ L+K +P+ ++L+ML 
Sbjct: 4   LKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLS 63

Query: 238 NFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLM 297
               +   L  +E+F + +  VP  + R+ ++L K +F+  +  ++P I S+  A E+L 
Sbjct: 64  ELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELR 123

Query: 298 SNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAE 357
            ++    +L + +  GN++N+G     A G  +S L KL D ++    M L+H++A   E
Sbjct: 124 KSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCE 183

Query: 358 KKRKELLNFTEDMGFLEEATKLT 380
               E+L F +++  +E+A++++
Sbjct: 184 NDHPEVLKFPDELAHVEKASRVS 206
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411 Back     information, alignment and structure
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 343 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
d1v9da_ 332 Diaphanous protein homolog 1, dia1 {Mouse (Mus mus 100.0
d1ux5a_ 411 Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d2bnxa1343 Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { 99.76
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-53  Score=416.23  Aligned_cols=209  Identities=26%  Similarity=0.485  Sum_probs=182.4

Q ss_pred             cceeecchhhhhHHHHhhccCCCCHHHHHHHHHcCCCCCCChhHHHHHHHhCCCHHHHHHHhcccCCCCCCChHHHHHHH
Q psy16508        176 LLILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQ  255 (385)
Q Consensus       176 k~vsvLd~kraqNi~I~L~~lk~s~eei~~aI~~~D~~~L~~e~l~~L~~~lPt~eE~~~l~~~~~d~~~L~~aEqF~~~  255 (385)
                      ++|+|||+||||||+|+|++|++|+++|+++|..||.+.|+.|.++.|++++||++|++.+++|.||.+.|+++|+|++.
T Consensus         2 k~i~vLd~kr~~ni~I~L~~~k~~~~~i~~ai~~~D~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~   81 (332)
T d1v9da_           2 KELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVV   81 (332)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHHHHH
T ss_pred             ceeEeccHHHHHHHHHHHhhCCcCHHHHHHHHHhCCcccCCHHHHHHHHHhCcCHHHHHHHHHhcCChhhcChHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhccccCCCCCCCccceeecccccc
Q psy16508        256 LIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQK  335 (385)
Q Consensus       256 l~~ip~~~~Rl~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~IL~iGNylN~gs~~g~A~GFkLssL~K  335 (385)
                      |+.||+|+.||+||+|+.+|++.++++.+.+..+..||++|++|++|+.+|++||++|||||+|+++|+|+||+|+||.|
T Consensus        82 l~~ip~~~~Rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~~L~~iL~~GN~mN~g~~~g~A~GFkL~sL~k  161 (332)
T d1v9da_          82 MGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCK  161 (332)
T ss_dssp             HHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CCHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcchhccccccccccccCHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCcChHHHHHHHHHHccccccchHhhhhhHHHhhccCcccC
Q psy16508        336 LTDIRANKPGMNLIHYVALQAEKKRKELLNFTEDMGFLEEATKLTKLGQ  384 (385)
Q Consensus       336 L~~tKs~d~k~TLLh~l~~~v~~~~Pell~f~~eL~~v~~Askvs~e~~  384 (385)
                      |.++|++|+++||||||++.+++++|++++|.+||++|..|++++++++
T Consensus       162 L~d~Ks~d~~~tLL~~iv~~~~~~~p~l~~~~~eL~~v~~ask~~~~~l  210 (332)
T d1v9da_         162 LRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENL  210 (332)
T ss_dssp             HHHSBCSSTTSBHHHHHHHHHHHSCCTTSSGGGGCTTHHHHHHCCHHHH
T ss_pred             HhhccCCCCCccHHHHHHHHHHHhCchhccchhhhhhHHHHhcCCHHHH
Confidence            9999999999999999999999999999999999999999999999864
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure