Psyllid ID: psy16627
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | 2.2.26 [Sep-21-2011] | |||||||
| A6QNT8 | 1099 | Protein transport protein | no | N/A | 0.884 | 0.574 | 0.508 | 0.0 | |
| O95487 | 1268 | Protein transport protein | yes | N/A | 0.884 | 0.497 | 0.518 | 0.0 | |
| Q3U2P1 | 1090 | Protein transport protein | yes | N/A | 0.884 | 0.578 | 0.511 | 0.0 | |
| O95486 | 1093 | Protein transport protein | no | N/A | 0.884 | 0.577 | 0.507 | 0.0 | |
| Q4P9K4 | 995 | Protein transport protein | N/A | N/A | 0.883 | 0.633 | 0.366 | 1e-109 | |
| Q9SFU0 | 1038 | Protein transport protein | yes | N/A | 0.851 | 0.584 | 0.370 | 1e-106 | |
| Q2HH63 | 947 | Protein transport protein | N/A | N/A | 0.880 | 0.663 | 0.337 | 1e-103 | |
| Q7S4P3 | 950 | Protein transport protein | N/A | N/A | 0.883 | 0.663 | 0.338 | 1e-102 | |
| Q1E6U9 | 932 | Protein transport protein | N/A | N/A | 0.883 | 0.675 | 0.337 | 1e-101 | |
| A1CUC3 | 919 | Protein transport protein | N/A | N/A | 0.880 | 0.683 | 0.333 | 1e-99 |
| >sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/633 (50%), Positives = 461/633 (72%), Gaps = 2/633 (0%)
Query: 82 EIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQ 141
++ E+F+Y+ T ++G+P+RRPE+Q+AT+E++A ++Y +R PPQP +YLF+ DVS A +
Sbjct: 466 DVPEEFMYNPLTRVYGEPHRRPEVQNATIEFMAPSEYMLR-PPQPPVYLFVFDVSHNAIE 524
Query: 142 SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 201
+GYL +VC+ LL+ L +PG+ RT I IT+DS +HFYSL EG +QP +I++DI+D+F+
Sbjct: 525 TGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYSLQEGLSQPQMLIVSDIEDVFI 584
Query: 202 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQ 261
P PEN+LVNL+E +++ DLLK LP F +L++ SALGPALQAAFKL+ PTGGR+++FQ
Sbjct: 585 PMPENLLVNLNESKELVQDLLKTLPQMFTKTLETQSALGPALQAAFKLMSPTGGRMSVFQ 644
Query: 262 TCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 321
T LP G GAL+ RE PNQRS+ H+ P+TDFYKK+AL+C+ +AVDLF+L+ QY D
Sbjct: 645 TQLPTLGVGALKPREEPNQRSSAKEIHLTPSTDFYKKLALDCSGQQVAVDLFLLSGQYSD 704
Query: 322 LATLSGVSKFSSGCIHHIPLYSGK-NMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMS 380
LA+L +S++S+G +++ P Y + N V +L++ RYLTRKIGFE+VMRIRCTKG+S
Sbjct: 705 LASLGCISRYSAGSVYYYPSYHHQHNPIQVQKLEKELQRYLTRKIGFEAVMRIRCTKGLS 764
Query: 381 IHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRI 440
IHTFHGNFFVRSTDLL+LPNVNPDAGY +Q+S++E+LT Q FQ A+LYTSSKG+RRI
Sbjct: 765 IHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRI 824
Query: 441 RVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTY 500
RVHTLCLPVVS +N+V +GAD I+GLLA MAVDRS+ SLSDAR+A +N V D LS Y
Sbjct: 825 RVHTLCLPVVSTLNEVFLGADVQAISGLLANMAVDRSVTASLSDARDALVNAVIDSLSAY 884
Query: 501 KMTQAGHLTGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSL 560
+ + + L+ P SL++ PL+VLALLK +F+ G + RLD+R+FAM ++K PL L
Sbjct: 885 RSSALSNQQPGLMVPFSLRLFPLFVLALLKQKSFQTGTNARLDERIFAMCQVKNQPLVYL 944
Query: 561 MLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRH 620
ML+ +P LY + L + I N+ +P P ILQLS E+L G +L++ ++++ V
Sbjct: 945 MLTTHPSLYRVDNLSDEGAISINDRTIPQPPILQLSVEKLSRDGAFLMDAGSVLMLWVGR 1004
Query: 621 GTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDS 680
S + G ++ A +P+T+ +LP+L+T S + +FIS+L + + + + VI+D
Sbjct: 1005 NCGQNFLSQVLGVENYALIPQTMTDLPELDTPESARTIAFISWLREQRPFYPILYVIRDE 1064
Query: 681 SPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 713
SP + F ++ED+ ++YYEFLL I++QV
Sbjct: 1065 SPMKANFLQNMVEDRTESALSYYEFLLHIQQQV 1097
|
Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex. Bos taurus (taxid: 9913) |
| >sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus musculus GN=Sec24a PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q4P9K4|SEC24_USTMA Protein transport protein SEC24 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC24 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q2HH63|SEC24_CHAGB Protein transport protein SEC24 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SEC24 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q7S4P3|SEC24_NEUCR Protein transport protein sec-24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec-24 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q1E6U9|SEC24_COCIM Protein transport protein SEC24 OS=Coccidioides immitis (strain RS) GN=SEC24 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|A1CUC3|SEC24_ASPCL Protein transport protein sec24 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=sec24 PE=3 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| 380028803 | 884 | PREDICTED: protein transport protein Sec | 0.883 | 0.712 | 0.560 | 0.0 | |
| 340726998 | 884 | PREDICTED: protein transport protein Sec | 0.883 | 0.712 | 0.560 | 0.0 | |
| 328783563 | 784 | PREDICTED: protein transport protein Sec | 0.883 | 0.803 | 0.558 | 0.0 | |
| 350414265 | 884 | PREDICTED: protein transport protein Sec | 0.883 | 0.712 | 0.556 | 0.0 | |
| 383851333 | 1053 | PREDICTED: protein transport protein Sec | 0.883 | 0.598 | 0.560 | 0.0 | |
| 307188358 | 1223 | Protein transport protein Sec24B [Campon | 0.886 | 0.516 | 0.553 | 0.0 | |
| 307192121 | 645 | Protein transport protein Sec24B [Harpeg | 0.887 | 0.981 | 0.562 | 0.0 | |
| 332025517 | 789 | Protein transport protein Sec24B [Acromy | 0.886 | 0.801 | 0.547 | 0.0 | |
| 156546847 | 1271 | PREDICTED: protein transport protein Sec | 0.883 | 0.495 | 0.536 | 0.0 | |
| 189236467 | 1217 | PREDICTED: similar to Sec24B protein, pu | 0.884 | 0.518 | 0.548 | 0.0 |
| >gi|380028803|ref|XP_003698076.1| PREDICTED: protein transport protein Sec24B-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/632 (56%), Positives = 480/632 (75%), Gaps = 2/632 (0%)
Query: 82 EIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQ 141
E+ E+F +D T+ +GDP RRPE++++T+E++A+++Y +R PPQPA+YLF+LDVS++A +
Sbjct: 254 ELPEEFQFDPVTKSYGDPSRRPEVKTSTIEFIASSEYMLR-PPQPAVYLFVLDVSRLAVE 312
Query: 142 SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 201
SGYL TVC V+ +L +PGD RT I + DSA+HF+ + + +QP +MI+ DIDD+FL
Sbjct: 313 SGYLNTVCNVISEELSRLPGDSRTQIGFLAVDSAIHFFGIPDNVSQPQEMIMLDIDDVFL 372
Query: 202 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQ 261
P PEN++VNL E +++ DLL QLP KF+ + D+ SALG ALQAA+KL+ PTGGR+T+FQ
Sbjct: 373 PCPENLIVNLKEREELVRDLLTQLPIKFQGTHDTNSALGAALQAAYKLMSPTGGRVTVFQ 432
Query: 262 TCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 321
TCLPN GPG LQ+RE+PN R++ D PH+NP TDFYK++AL+C+ IAVDLF+LN QY D
Sbjct: 433 TCLPNLGPGLLQAREDPNNRASKDVPHLNPVTDFYKRLALDCSGQQIAVDLFLLNCQYCD 492
Query: 322 LATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSI 381
L+T+SG+ KFS GCI+H+PL+ HV LDR+ RYLTRKIGFE+VMRIRCT+G+SI
Sbjct: 493 LSTISGMCKFSGGCIYHLPLFRASKPQHVETLDRILRRYLTRKIGFEAVMRIRCTRGLSI 552
Query: 382 HTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIR 441
HTFHGNFFVRSTDLL+LPNVNPDAG+G+QISI+ENL+ +Q CFQ A+LYTSSKG+RRIR
Sbjct: 553 HTFHGNFFVRSTDLLSLPNVNPDAGFGMQISIEENLSDVQNVCFQAALLYTSSKGERRIR 612
Query: 442 VHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYK 501
VHTLCLPVVS ++DVL ADQ CI GLL+KMAVDRS Q S+SDAR+A +NV DVLS YK
Sbjct: 613 VHTLCLPVVSTLSDVLHSADQQCIVGLLSKMAVDRSQQSSISDARDALINVAIDVLSAYK 672
Query: 502 MTQAGHLTGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLM 561
++Q+ +G LLAP+SLK+LPLY++ALLK AFR G STRLDDR+FAM ++K +PL L+
Sbjct: 673 LSQSA-TSGGLLAPASLKLLPLYIIALLKCVAFRSGTSTRLDDRVFAMCQLKTIPLFQLI 731
Query: 562 LSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHG 621
IYP+LYPIH L+ + + P P L LSAE+L + G +L++ D I IL+
Sbjct: 732 QMIYPDLYPIHALEDRNAKDIDGKLCPQPPRLHLSAEKLDSRGAFLMDTGDQIFILIGKN 791
Query: 622 TSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSS 681
P+ C + G + +PE +ELP++ET S +L +F+ L ++K Y + +++I+D S
Sbjct: 792 IHPSFCCNVLGVSAFPSIPEEFYELPEIETTESERLRNFVFSLQEEKPYPASIQIIRDDS 851
Query: 682 PDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 713
R F ++LIED+ ++YYEFL ++ QV
Sbjct: 852 HFRTLFVERLIEDRFENSLSYYEFLQHLKTQV 883
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340726998|ref|XP_003401838.1| PREDICTED: protein transport protein Sec24B-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
| >gi|328783563|ref|XP_394884.3| PREDICTED: protein transport protein Sec24B-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
| >gi|350414265|ref|XP_003490260.1| PREDICTED: protein transport protein Sec24B-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|383851333|ref|XP_003701188.1| PREDICTED: protein transport protein Sec24B-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|307188358|gb|EFN73133.1| Protein transport protein Sec24B [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
| >gi|307192121|gb|EFN75449.1| Protein transport protein Sec24B [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
| >gi|332025517|gb|EGI65680.1| Protein transport protein Sec24B [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
| >gi|156546847|ref|XP_001606431.1| PREDICTED: protein transport protein Sec24B-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
| >gi|189236467|ref|XP_974325.2| PREDICTED: similar to Sec24B protein, putative [Tribolium castaneum] gi|270005372|gb|EFA01820.1| hypothetical protein TcasGA2_TC007422 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| FB|FBgn0033460 | 1184 | sec24 "sec24" [Drosophila mela | 0.882 | 0.531 | 0.520 | 4.4e-180 | |
| UNIPROTKB|J9PAS8 | 1258 | SEC24B "Uncharacterized protei | 0.882 | 0.5 | 0.512 | 1e-176 | |
| UNIPROTKB|F1Q043 | 1258 | SEC24B "Uncharacterized protei | 0.882 | 0.5 | 0.511 | 3.1e-175 | |
| UNIPROTKB|A6QNT8 | 1099 | SEC24A "Protein transport prot | 0.884 | 0.574 | 0.494 | 1.4e-174 | |
| UNIPROTKB|E1BSA7 | 1100 | SEC24A "Uncharacterized protei | 0.884 | 0.573 | 0.496 | 1.6e-173 | |
| UNIPROTKB|J9P4C3 | 1100 | SEC24A "Uncharacterized protei | 0.884 | 0.573 | 0.494 | 2.5e-173 | |
| UNIPROTKB|F1RHC7 | 1144 | SEC24A "Uncharacterized protei | 0.884 | 0.551 | 0.492 | 2.5e-173 | |
| UNIPROTKB|O95486 | 1093 | SEC24A "Protein transport prot | 0.884 | 0.577 | 0.492 | 4.1e-173 | |
| MGI|MGI:1924621 | 1090 | Sec24a "Sec24 related gene fam | 0.884 | 0.578 | 0.497 | 5.3e-173 | |
| UNIPROTKB|B7ZKM8 | 1298 | SEC24B "SEC24B protein" [Homo | 0.882 | 0.484 | 0.507 | 3.7e-172 |
| FB|FBgn0033460 sec24 "sec24" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1699 (603.1 bits), Expect = 4.4e-180, Sum P(2) = 4.4e-180
Identities = 336/646 (52%), Positives = 451/646 (69%)
Query: 82 EIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQ 141
E+ + F +D T+ +GD RRPE++S+T+E++A ++Y +R PPQPAMYLFL DVS IA Q
Sbjct: 541 ELPDDFQFDPATKTYGDVTRRPEVRSSTIEFIAPSEYMLR-PPQPAMYLFLFDVSIIAQQ 599
Query: 142 SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 201
SGYL C VL L MPGD RT + I +DS VHFYS+AEG QP +M L DI+D FL
Sbjct: 600 SGYLEAACAVLNRHLDEMPGDARTQVGFICFDSFVHFYSMAEGLNQPHEMTLLDIEDPFL 659
Query: 202 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQ 261
P P+++LVNL EC +++ DLLKQLP +F + D GSALG ALQ AFKL+Q +GGRIT+FQ
Sbjct: 660 PRPDSLLVNLKECKELVRDLLKQLPKRFAHTHDPGSALGAALQVAFKLMQASGGRITVFQ 719
Query: 262 TCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 321
+CLPN+GPGAL+ RE+PN RS D H+NPATDFYK+ ALEC+ + IA DLF++N QY D
Sbjct: 720 SCLPNKGPGALEPREDPNNRSAKDVAHLNPATDFYKRFALECSGYQIACDLFLMNQQYSD 779
Query: 322 LATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRM-FSRYLTRKIGFESVMRIRCTKGMS 380
+AT+SG+SK S GC+HH PLY K H+ + R F RYLTRKIGFE+VMRIRCT+G+
Sbjct: 780 MATISGISKHSGGCVHHFPLYQ-KTKPHMVESFRSCFKRYLTRKIGFEAVMRIRCTRGLQ 838
Query: 381 IHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRI 440
+HTFHGNFFVRSTDLL+LPNVNPDAGYG+QIS +E+LT + CFQ A+LYT+S+G+RRI
Sbjct: 839 VHTFHGNFFVRSTDLLSLPNVNPDAGYGMQISYEESLTDAKTICFQAALLYTNSEGERRI 898
Query: 441 RVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTY 500
RVHT+CLPV +++ +V+ AD I GLL+KMAVDRS+ +LSDAR+AF+N DV + +
Sbjct: 899 RVHTVCLPVTASLPEVMHSADTEAIIGLLSKMAVDRSVASNLSDARDAFINATIDVYNAF 958
Query: 501 KMTQ---AGHLTGSLLAPSSXXXXXXXXXXXXXHPAFRIGQSTRLDDRLFAMTEMKCLPL 557
K+ Q +G +G L+AP S HPAFR+G STRLDDR++AM MK LPL
Sbjct: 959 KIAQNLPSGQ-SGQLIAPRSLALLPLYILALLKHPAFRVGTSTRLDDRVYAMDCMKTLPL 1017
Query: 558 NSLMLSIYPELYPIHTL---DQDPTIEWNE-----LQVPIPRI--LQLSAERLQATGTYL 607
+ LM +YPELY I L ++ I N+ P+P + LQLSAE L + +L
Sbjct: 1018 DQLMKYVYPELYKIDALIYHARNSNISSNQDDDEDEDEPLPELPRLQLSAEHLDSRSIFL 1077
Query: 608 LNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDD 667
++ LI+I V P + + G S A++ + ++ LP + + + L FI LN D
Sbjct: 1078 MDCGTLIMIYVGLNVPPDVLEAVLGISSTAELGDYVYGLPNVVSNENDVLKRFILRLNYD 1137
Query: 668 KAYVSPVKVIKDSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 713
K Y + V++I+D+S + +F ++L +D++ ++YYEFL IR QV
Sbjct: 1138 KPYSALVQIIRDTSTAKGQFTERLTDDRSESSLSYYEFLQHIRAQV 1183
|
|
| UNIPROTKB|J9PAS8 SEC24B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1Q043 SEC24B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A6QNT8 SEC24A "Protein transport protein Sec24A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BSA7 SEC24A "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P4C3 SEC24A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RHC7 SEC24A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O95486 SEC24A "Protein transport protein Sec24A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1924621 Sec24a "Sec24 related gene family, member A (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B7ZKM8 SEC24B "SEC24B protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6CLE0 | SEC24_KLULA | No assigned EC number | 0.3225 | 0.8625 | 0.6655 | yes | N/A |
| Q6FWD3 | SC242_CANGA | No assigned EC number | 0.3271 | 0.8527 | 0.6710 | yes | N/A |
| P0CR40 | SEC24_CRYNJ | No assigned EC number | 0.3348 | 0.8835 | 0.6847 | yes | N/A |
| Q4WLP1 | SEC24_ASPFU | No assigned EC number | 0.3307 | 0.8807 | 0.6833 | yes | N/A |
| Q0PVD8 | SEC24_PICPA | No assigned EC number | 0.3156 | 0.8821 | 0.6552 | yes | N/A |
| Q75B16 | SEC24_ASHGO | No assigned EC number | 0.3176 | 0.8569 | 0.6857 | yes | N/A |
| Q86ZK8 | SEC24_PODAS | No assigned EC number | 0.3312 | 0.8807 | 0.6638 | yes | N/A |
| Q9UUI5 | SEC24_SCHPO | No assigned EC number | 0.3255 | 0.8821 | 0.6792 | yes | N/A |
| Q6BT80 | SEC24_DEBHA | No assigned EC number | 0.3125 | 0.8821 | 0.6807 | yes | N/A |
| A2QSG6 | SEC24_ASPNC | No assigned EC number | 0.3261 | 0.8807 | 0.6833 | yes | N/A |
| P40482 | SEC24_YEAST | No assigned EC number | 0.3174 | 0.8541 | 0.6576 | yes | N/A |
| Q2ULI0 | SEC24_ASPOR | No assigned EC number | 0.3307 | 0.8807 | 0.6878 | yes | N/A |
| Q875V7 | SC242_NAUCC | No assigned EC number | 0.3276 | 0.8485 | 0.6633 | yes | N/A |
| Q3U2P1 | SC24A_MOUSE | No assigned EC number | 0.5118 | 0.8849 | 0.5788 | yes | N/A |
| O95487 | SC24B_HUMAN | No assigned EC number | 0.5189 | 0.8849 | 0.4976 | yes | N/A |
| Q6C2T4 | SEC24_YARLI | No assigned EC number | 0.3221 | 0.8835 | 0.6745 | yes | N/A |
| Q5B6W0 | SEC24_EMENI | No assigned EC number | 0.3292 | 0.8807 | 0.6916 | yes | N/A |
| A3LRW3 | SEC24_PICST | No assigned EC number | 0.3204 | 0.8849 | 0.6957 | yes | N/A |
| Q54U61 | SEC24_DICDI | No assigned EC number | 0.3236 | 0.8541 | 0.6011 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 713 | |||
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 1e-127 | |
| cd01479 | 244 | cd01479, Sec24-like, Sec24-like: Protein and membr | 1e-103 | |
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 9e-81 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 2e-74 | |
| PTZ00395 | 1560 | PTZ00395, PTZ00395, Sec24-related protein; Provisi | 3e-33 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 2e-31 | |
| pfam04815 | 103 | pfam04815, Sec23_helical, Sec23/Sec24 helical doma | 3e-24 | |
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 6e-08 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 3e-07 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 2e-05 |
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 399 bits (1027), Expect = e-127
Identities = 222/623 (35%), Positives = 349/623 (56%), Gaps = 17/623 (2%)
Query: 97 GDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQL 156
D Y RPE++S V++LA +Y++R PP P +Y+FL+DVS A ++G + +L L
Sbjct: 248 SDRYSRPELKSGVVDFLAPKEYSLRQPP-PPVYVFLIDVSFEAIKNGLVKAAIRAILENL 306
Query: 157 KSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN-ILVNLSEC 214
+P D RT IAII +DS++HF+ L+ +I++D+D+ FLP P ++ L C
Sbjct: 307 DQIPNFDPRTKIAIICFDSSLHFFKLSPD-LDEQMLIVSDLDEPFLPFPSGLFVLPLKSC 365
Query: 215 YDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQS 274
+I LL ++P F+D+ +ALGPAL+AA L+ TGG+I +F + LPN G G LQ
Sbjct: 366 KQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGGKIIVFLSTLPNMGIGKLQL 425
Query: 275 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG 334
RE+ ++ FYK+ A+EC+ I+VDLF+ + Y+D+ATLS + +++ G
Sbjct: 426 REDKESS------LLSCKDSFYKEFAIECSKVGISVDLFLTSEDYIDVATLSHLCRYTGG 479
Query: 335 CIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTD 394
+ P +S + +L +L+ +IG+E+VMR+RC+ G+ + +F+GNFF RS+D
Sbjct: 480 QTYFYPNFSATRPNDATKLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYGNFFNRSSD 539
Query: 395 LLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNIN 454
L A + D ++ SIDE L FQVA+LYT + G+RRIRV L LP S+I
Sbjct: 540 LCAFSTMPRDTSLLVEFSIDEKLMT-SDVYFQVALLYTLNDGERRIRVVNLSLPTSSSIR 598
Query: 455 DVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLA 514
+V ADQ IA +LAK A ++L SL +AR + D+L YK T + L
Sbjct: 599 EVYASADQLAIACILAKKASTKALNSSLKEARVLINKSMVDILKAYKKELVKSNTSTQLP 658
Query: 515 -PSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHT 573
P++LK+LPL +LALLK AFR G ST D R+ A+ + LPL LM +IYP LY +H
Sbjct: 659 LPANLKLLPLLMLALLKSSAFRSG-STPSDIRISALNRLTSLPLKQLMRNIYPTLYALHD 717
Query: 574 LDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGF 633
+ +E + +P + ++ L++ G YL++ I + P++ LFG
Sbjct: 718 M-PIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGV 776
Query: 634 QSVAQMPETLFELPQLETQLSLKLNSFIS--YLNDDKAYVSPVKVIKDSSPD-RMEFYDK 690
S++ +P F LP + + ++ + I +D + + V V P R+ F+
Sbjct: 777 DSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTLPLVLVRGGGDPSLRLWFFST 836
Query: 691 LIEDKNAGGMAYYEFLLRIREQV 713
L+EDK +Y ++L + E++
Sbjct: 837 LVEDKTLNIPSYLDYLQILHEKI 859
|
Length = 861 |
| >gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
|---|
| >gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain | Back alignment and domain information |
|---|
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| KOG1985|consensus | 887 | 100.0 | ||
| KOG1984|consensus | 1007 | 100.0 | ||
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| KOG1986|consensus | 745 | 100.0 | ||
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 100.0 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 100.0 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.85 | |
| PF04815 | 103 | Sec23_helical: Sec23/Sec24 helical domain; InterPr | 99.83 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 98.69 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.57 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 98.5 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.5 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.49 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 98.46 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.46 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.44 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 98.34 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.22 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 98.17 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 98.16 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 98.13 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 98.07 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.07 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 98.03 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 98.03 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 97.97 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 97.93 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 97.92 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 97.88 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 97.8 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 97.73 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 97.73 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 97.7 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 97.68 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 97.66 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 97.61 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.55 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 97.54 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 97.45 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.38 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 97.36 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 97.35 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 97.28 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.26 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 97.09 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 96.9 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 96.88 | |
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 96.76 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 96.68 | |
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 96.56 | |
| KOG2884|consensus | 259 | 95.86 | ||
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 95.46 | |
| KOG0443|consensus | 827 | 95.03 | ||
| COG5148 | 243 | RPN10 26S proteasome regulatory complex, subunit R | 94.37 | |
| TIGR00578 | 584 | ku70 ATP-dependent DNA helicase ii, 70 kDa subunit | 93.4 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 93.22 | |
| cd01457 | 199 | vWA_ORF176_type VWA ORF176 type: Von Willebrand fa | 92.9 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 91.87 | |
| TIGR00627 | 279 | tfb4 transcription factor tfb4. This family is bas | 91.68 | |
| PF03850 | 276 | Tfb4: Transcription factor Tfb4; InterPro: IPR0046 | 91.26 | |
| KOG0443|consensus | 827 | 87.36 | ||
| PF03731 | 224 | Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte | 87.11 | |
| cd01455 | 191 | vWA_F11C1-5a_type Von Willebrand factor type A (vW | 86.88 | |
| KOG0444|consensus | 1255 | 85.98 |
| >KOG1985|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-144 Score=1190.53 Aligned_cols=690 Identities=47% Similarity=0.792 Sum_probs=651.0
Q ss_pred CcchhhHhHhhhhhcccccccccccccccccc--cccccCCCCCCCCCCCCCCCCCCCCC--------------------
Q psy16627 21 YQQQQQQQQQQTLNSQFSNLSVNQGMNKMWGY--EPHDLLNTRDILPATKVEPPPIRLPQ-------------------- 78 (713)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~p~~~~~p~~~~~~~-------------------- 78 (713)
+..-+..+.|.|+++.|.+.++.+.+..|||. +|+.-+.+-..+|...-.-. +|||.
T Consensus 165 ~~nc~p~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~d~~~~p~~~~~~I-vRCr~CRtYiNPFV~fid~gr~WrC 243 (887)
T KOG1985|consen 165 SSNCSPSYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLDDIDPLPVITSTLI-VRCRRCRTYINPFVEFIDQGRRWRC 243 (887)
T ss_pred ccCCCHHHHHHHHHhCCccHHHHHhcCCCceEEEeecccccccCCCCcccCCce-eeehhhhhhcCCeEEecCCCceeee
Confidence 33445677899999999999999999999998 44443335556666655433 67773
Q ss_pred ----CCCCCCcccccCCCCCCCCCCCCCCccccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHH
Q psy16627 79 ----NLPEIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLN 154 (713)
Q Consensus 79 ----~~n~~p~~~~~~~~~~~y~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~ 154 (713)
++|+||.+|+++|+++.|+|+++||||++++|||++|.|||.| ||+|++|+|+||||.+++++|+|+++|++|++
T Consensus 244 NlC~~~NdvP~~f~~~~~t~~~~~~~~RpEl~~s~vE~iAP~eYmlR-~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~ 322 (887)
T KOG1985|consen 244 NLCGRVNDVPDDFDWDPLTGAYGDPYSRPELTSSVVEFIAPSEYMLR-PPQPAVYVFLIDVSISAIKSGYLETVARSLLE 322 (887)
T ss_pred chhhhhcCCcHHhhcCccccccCCcccCccccceeEEEecCcccccC-CCCCceEEEEEEeehHhhhhhHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhhcCCCCCCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCC
Q psy16627 155 QLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLD 234 (713)
Q Consensus 155 ~L~~lp~~~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~ 234 (713)
.||.||+++|++|||||||++||||+++.+..+|+|++++|++|+|+|.|++||||++|||+.|+++|++|+.+|.+++.
T Consensus 323 ~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~ 402 (887)
T KOG1985|consen 323 NLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQPQMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRS 402 (887)
T ss_pred hhhcCCCCCcceEEEEEeeceeeEEecCCCcCCCceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCCCC-CCCCcchHHHHHHHHHHHhhCCeEEEEE
Q psy16627 235 SGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSNDD-PPHMNPATDFYKKIALECTSFYIAVDLF 313 (713)
Q Consensus 235 ~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~~~-~~~~~~a~~fY~~La~~~~~~~isvDlf 313 (713)
+++|+|+||++|.++|+.+||||++|++++||.|.|+|+.||+++.++.++ ..++.+++.|||++|.+|++.||+||+|
T Consensus 403 t~~alGpALkaaf~li~~~GGri~vf~s~lPnlG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlF 482 (887)
T KOG1985|consen 403 TGSALGPALKAAFNLIGSTGGRISVFQSTLPNLGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLF 482 (887)
T ss_pred cccccCHHHHHHHHHHhhcCCeEEEEeccCCCCCccccccccccccccchhhhhccCCCchHHHHHHHHhccCceEEEEE
Confidence 999999999999999999999999999999999999999999998876654 6899999999999999999999999999
Q ss_pred EecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHHHHHHHHhhccccccceEEEEEecCCceEEEEecCccccCC
Q psy16627 314 ILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRST 393 (713)
Q Consensus 314 ~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~S~gl~v~~~~G~~~~~~t 393 (713)
+++.+|.|+|+|+.|+++|||.+|+|++|+.+++.+..+|.++|.|+|+|++||+|+||||||+|++++++||||+.|++
T Consensus 483 l~s~qY~DlAsLs~LskySgG~~y~YP~f~~s~p~~~~Kf~~el~r~Ltr~~~feaVmRiR~S~gl~~~~f~GnFF~RSt 562 (887)
T KOG1985|consen 483 LFSEQYTDLASLSCLSKYSGGQVYYYPSFDGSNPHDVLKFARELARYLTRKIGFEAVMRIRCSTGLRMSSFFGNFFVRST 562 (887)
T ss_pred eecccccchhhhhccccccCceeEEccCCCCCCHHHHHHHHHHHHHHhhhhhhhheeEEeeccccccccceecccccCcH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CceeecCCCCCCeEEEEEEeecccCCCceeEEEEEEEeeecCCCEEEEEEecccccccCHHHHHhccCHHHHHHHHHHHH
Q psy16627 394 DLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMA 473 (713)
Q Consensus 394 ~~~~l~~i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~ea~~~llar~a 473 (713)
|++.++++++|++++|++++++.+.. ...+||.|++||.+.|||||||||+++++++++.++|+++|++|++.+|+++|
T Consensus 563 DLla~~~v~~D~sy~~qisiEesl~~-~~~~fQvAlLyT~~~GERRIRV~T~~lpt~~sl~evY~saD~~AI~~lla~~A 641 (887)
T KOG1985|consen 563 DLLALPNVNPDQSYAFQISIEESLTT-GFCVFQVALLYTLSKGERRIRVHTLCLPTVSSLNEVYASADQEAIASLLAKKA 641 (887)
T ss_pred HHhcccCCCCCccceEEEEeehhcCC-ceeEEEeeeeecccCCceeEEEEEeeccccccHHHHHhhcCHHHHHHHHHHHH
Confidence 99999999999999999999999874 56779999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCccccCcccchHHHHHHHHhcCccccCCCCCChhHHHHHHHH
Q psy16627 474 VDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGH--LTGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTE 551 (713)
Q Consensus 474 v~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~--~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~ 551 (713)
+++++++++.|||+.|.++++|++..|++..... ....+.+|.+|++||+|+++|+|+++||.++.+++|+|+++++.
T Consensus 642 v~ksl~ssL~dardal~~~~~D~l~aYk~~~~~~~~~~~~l~~p~~LrllPllvlALlK~~~fr~g~~~~lD~R~~a~~~ 721 (887)
T KOG1985|consen 642 VEKSLSSSLSDARDALTNAVVDILNAYKKLVSNQNGQGITLSLPASLRLLPLLVLALLKHPAFRPGTGTRLDYRAYAMCL 721 (887)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCcceecCcchhhhHHHHHHHhcCCcccCCCCCCchHHHHHHHH
Confidence 9999999999999999999999999999975442 22359999999999999999999999999989999999999999
Q ss_pred HcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhcc
Q psy16627 552 MKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLF 631 (713)
Q Consensus 552 l~~~~v~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lf 631 (713)
++.+++..++.+|||+||++|+++.+++...+++.+++|+.++|+++.+++.|+||||+|..+++|||++++|+++.++|
T Consensus 722 ~~~lpl~~L~k~IYP~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~ll~~vf 801 (887)
T KOG1985|consen 722 MSTLPLKYLMKYIYPTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSLLFDVF 801 (887)
T ss_pred hhcCCHHHHHhhhcccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCcccccccc
Confidence 99999999999999999999999999887766777899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCC--cHHHHHHhhcccCCCCCCCHHHHHHHH
Q psy16627 632 GFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSP--DRMEFYDKLIEDKNAGGMAYYEFLLRI 709 (713)
Q Consensus 632 g~~~~~~~~~~~~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~--~~~~f~~~LvED~~~~~~SY~dfL~~l 709 (713)
|+..+.+++.++.++|+.|++.++++++||.+||+.|.+.+.++|||+++. ..+.|+++||||++.+..||+|||.||
T Consensus 802 g~~~~adi~~~~~~lp~~~n~~s~r~~~fI~~lR~d~~~~p~~~ivr~~~~s~~k~~f~~~lvEDrs~~~~SY~efLq~l 881 (887)
T KOG1985|consen 802 GVSTLADIPIGKYTLPELDNEESDRVRRFIKKLRDDRTYFPNLYIVRGDDNSPLKAWFFSRLVEDRSENSPSYYEFLQHL 881 (887)
T ss_pred CcchHhhcccccccCcccccchhHHHHHHHHHhhcCCcccceEEEEecCCCchHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996654 578999999999999999999999999
Q ss_pred HHhC
Q psy16627 710 REQV 713 (713)
Q Consensus 710 h~~i 713 (713)
|+||
T Consensus 882 k~qv 885 (887)
T KOG1985|consen 882 KAQV 885 (887)
T ss_pred HHHh
Confidence 9987
|
|
| >KOG1984|consensus | Back alignment and domain information |
|---|
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >KOG1986|consensus | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >KOG2884|consensus | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >KOG0443|consensus | Back alignment and domain information |
|---|
| >COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00627 tfb4 transcription factor tfb4 | Back alignment and domain information |
|---|
| >PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair | Back alignment and domain information |
|---|
| >KOG0443|consensus | Back alignment and domain information |
|---|
| >PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway | Back alignment and domain information |
|---|
| >cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >KOG0444|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 713 | ||||
| 3eh1_A | 751 | Crystal Structure Of The Human Copii-Coat Protein S | 0.0 | ||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 0.0 | ||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 0.0 | ||
| 1pcx_A | 810 | Crystal Structure Of The Copii Coat Subunit, Sec24, | 2e-84 | ||
| 1m2v_B | 926 | Crystal Structure Of The Yeast Sec2324 HETERODIMER | 3e-84 | ||
| 3eh2_A | 766 | Crystal Structure Of The Human Copii-Coat Protein S | 4e-69 | ||
| 3efo_B | 770 | Crystal Structure Of The Mammalian Copii-Coat Prote | 2e-68 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 8e-05 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 9e-05 |
| >pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 | Back alignment and structure |
|
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
| >pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 | Back alignment and structure |
| >pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 | Back alignment and structure |
| >pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 | Back alignment and structure |
| >pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 517 bits (1331), Expect = e-172
Identities = 197/661 (29%), Positives = 344/661 (52%), Gaps = 39/661 (5%)
Query: 89 YDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTV 148
+ Y R EI+ A +EY+A +YT+R P PA Y FL+DVSQ + +SG L T
Sbjct: 267 DQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR-QPPPATYCFLIDVSQSSIKSGLLATT 325
Query: 149 CEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQT-------QPSQMILTDIDDIF 200
LL L S+P D RT I+I+ D+A+H++ + Q + M + D+++ F
Sbjct: 326 INTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPF 385
Query: 201 LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIF 260
LP P +++V+L C I LL ++P F+ +L + ALGPAL++A+ L+ GG+I +
Sbjct: 386 LPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVV 445
Query: 261 QTCLPNRGPGALQSRENPNQRSN--DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ 318
LPN G G LQ R + + ++ FYK ++C+ I VDLF+ +
Sbjct: 446 SGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASED 505
Query: 319 YVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKG 378
Y+D+A+LS +S+F++G H P +SGKN + + + F+++++ E+VMR R + G
Sbjct: 506 YMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTG 565
Query: 379 MSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDR 438
+ + F+G+FF RS+DL A + D Y ++++DE++ Y QVAVL + + R
Sbjct: 566 LRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMA-DYCYVQVAVLLSLNNSQR 624
Query: 439 RIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLS 498
RIR+ TL +P ++ +V ADQ IA AV+++L SL DAR V D+L+
Sbjct: 625 RIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILA 684
Query: 499 TYKMTQAGHLTG---SLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCL 555
TYK T L ++L++ PL + +L KH AFR G D R A+ ++ L
Sbjct: 685 TYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFRSG-IVPSDHRASALNNLESL 743
Query: 556 PLNSLMLSIYPELYPIHTLDQDPTIEWNEL------QVPIPRILQLSAERLQATGTYLLN 609
PL L+ +IYP++Y +H + + + + +P+ + ++ + G YL++
Sbjct: 744 PLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLID 803
Query: 610 MPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLE-TQLSLKLNSFISYLNDDK 668
+ + + + PA+ +FG Q + +P E+P +E ++ + ++ + I+ L +
Sbjct: 804 NGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHD 863
Query: 669 AYVS--PVKVIK--------------DSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQ 712
++ + +++ + + R+ L+EDK +Y EFL ++ +
Sbjct: 864 DVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYREFLQIMKAR 923
Query: 713 V 713
+
Sbjct: 924 I 924
|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 99.23 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.78 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 98.35 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.29 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 98.28 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.27 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.25 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 98.25 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 98.22 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 98.2 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.19 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 98.16 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 98.15 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 98.13 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 98.1 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 98.08 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 98.05 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 98.04 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 98.01 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 97.85 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 97.65 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 97.63 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 97.58 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 97.58 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 97.48 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 97.38 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 97.25 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 97.08 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 96.76 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 96.53 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 96.49 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 95.95 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 95.62 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 95.52 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 94.15 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 94.01 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 93.7 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 92.19 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 91.39 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 91.22 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 90.71 | |
| 3vi3_B | 454 | Integrin beta-1; beta propeller fold, rossman fold | 90.59 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 89.39 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 89.34 | |
| 2yrc_A | 59 | Protein transport protein SEC23A; zinc binding, co | 88.4 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 88.17 | |
| 2nvo_A | 535 | RO sixty-related protein, RSR; alpha helical repea | 82.94 |
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-149 Score=1306.55 Aligned_cols=685 Identities=49% Similarity=0.819 Sum_probs=643.6
Q ss_pred hHhHhhhhhcccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCCC--------------CCCCCCcccccCC
Q psy16627 26 QQQQQQTLNSQFSNLSVNQGMNKMWGYEPHDLLNTRDILPATKVEPPPIRLPQ--------------NLPEIHEQFLYDR 91 (713)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~p~~~~~~~--------------~~n~~p~~~~~~~ 91 (713)
..|.|.|++..|.+.++.+.+..|.|.- +-|+++.+.+|.+.+.+| +||++ +.|.||+|++.|.
T Consensus 40 p~~~R~T~n~iP~t~~~~~~~~lPlg~~-i~Pl~~~~~~P~v~~~~p-~RC~rCrayiNPf~~f~~~~~w~Cn~C~~~N~ 117 (751)
T 3eh1_A 40 PDSFRCTLTNIPQTQALLNKAKLPLGLL-LHPFRDLTQLPVITSNTI-VRCRSCRTYINPFVSFIDQRRWKCNLCYRVND 117 (751)
T ss_dssp TTTEEESBSSEESSHHHHHHHCCCCEEE-ECTTCCCSCCCEECCSCC-CBCTTTCCBCCTTCEESSSSEEECTTTCCEEE
T ss_pred CCeEEeecccCCCCHHHHHhCCCCeEEE-EecCCcCCCCCccCCCCC-CcccCccCEeCCceEEecCCEEEcccccCCCC
Confidence 4577899999999999998899998872 237777777888777754 47663 7899999999998
Q ss_pred CCCCC---------CCCCCCCccccceEEEEeCCcccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCCC
Q psy16627 92 NTEMF---------GDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD 162 (713)
Q Consensus 92 ~~~~y---------~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~~ 162 (713)
+|.+| +|.++||||+++||||++|++|+.| ||+||+|+||||||.+++++|+++++|++|+++|+.||++
T Consensus 118 ~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r-~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~ 196 (751)
T 3eh1_A 118 VPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLR-PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGD 196 (751)
T ss_dssp CCGGGC---------CGGGSHHHHCSEEEEEECGGGCSS-SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCC
T ss_pred CCHHHhcccccccccCcccCchhccceEEEEcChhhhcC-CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 87766 3678999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEcCeEEEEEcCCCCCCCeeeeecCcCccCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHH
Q psy16627 163 RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPA 242 (713)
Q Consensus 163 ~~~~VglITF~~~V~~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~A 242 (713)
+|++|||||||++||||+++++.+++||++++|++|+|+|.|++||+|++||++.|+++|++|+.++++++++.+|+|+|
T Consensus 197 ~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~A 276 (751)
T 3eh1_A 197 SRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPA 276 (751)
T ss_dssp TTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHH
T ss_pred cCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCC-CCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccC
Q psy16627 243 LQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSN-DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 321 (713)
Q Consensus 243 L~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~s~-~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~ 321 (713)
|++|.++|+.+||||++|++|+||.|||+|+.|++++.++| |++++++++++||++||++|+++||+||+|+++.+|+|
T Consensus 277 L~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~d 356 (751)
T 3eh1_A 277 LQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSD 356 (751)
T ss_dssp HHHHHHHHTTTCEEEEEEECSCCCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCC
T ss_pred HHHHHHHhhcCCCEEEEEecCCCCCCCCccccccccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccC
Confidence 99999999999999999999999999999999998886665 56789999999999999999999999999999999999
Q ss_pred chhhcccccCCCceEEEeCCCCC-CcchhHHHHHHHHHHhhccccccceEEEEEecCCceEEEEecCccccCCCceeecC
Q psy16627 322 LATLSGVSKFSSGCIHHIPLYSG-KNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPN 400 (713)
Q Consensus 322 l~~l~~l~~~TGG~v~~y~~f~~-~~~~~~~~~~~dl~~~l~~~~g~~a~l~Vr~S~gl~v~~~~G~~~~~~t~~~~l~~ 400 (713)
++||+.+++.|||.+++|++|+. +++.+.++|.+||.+.+++++||+|+||||||+||+|+++||||+.++++.|++++
T Consensus 357 latl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~ 436 (751)
T 3eh1_A 357 LASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFHGNFFVRSTDLLSLAN 436 (751)
T ss_dssp HHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSEECSSSEEEEEE
T ss_pred hHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHHhhhhccceEEEEEecCCeEEEEeeCCeEeCCCCceEecc
Confidence 99999999999999999999994 45567789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEeecccCCCceeEEEEEEEeeecCCCEEEEEEecccccccCHHHHHhccCHHHHHHHHHHHHHHHHhcC
Q psy16627 401 VNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQH 480 (713)
Q Consensus 401 i~~~~s~~~~f~~~~~l~~~~~~~iQ~a~lYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~ea~~~llar~av~~~~~~ 480 (713)
+++|+|++|+|++++++.+.+.+|||+|++||+.+|+|||||||++++|++++.++|+++|+||++++|||+|+++++++
T Consensus 437 i~~d~s~~v~~~~~~~l~~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~~ 516 (751)
T 3eh1_A 437 INPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSS 516 (751)
T ss_dssp ECTTCCEEEEEEESSCCCSCSEEEEEEEEEEECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEEEcCCCCCCCceEEEEEEeeecCCCCEEEEEEEecccccCCHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCcccchHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhh
Q psy16627 481 SLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSL 560 (713)
Q Consensus 481 ~~~d~r~~l~~~li~~l~~yr~~~~~~~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~v~~~ 560 (713)
++.|+|+||+++++++|++||+++..+.+++|+||++||+||+||+||+||++|+.+.++++|||+|+|+.++++++.++
T Consensus 517 ~l~d~r~~l~~~li~il~~Yr~~~~~~~~~~l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~~~~~~ 596 (751)
T 3eh1_A 517 SLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHL 596 (751)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCC-----CCEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCcHHHHHHHHHHHHHHccHhhcCCCCCChhHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999997654445579999999999999999999999998778999999999999999999999
Q ss_pred HhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCCCCCC
Q psy16627 561 MLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMP 640 (713)
Q Consensus 561 ~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLlD~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~ 640 (713)
+.||||+||++|++.++++..++++.+++|+.++||+++|++|||||||+|++++||+|++++++++++|||++++.+++
T Consensus 597 ~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~ 676 (751)
T 3eh1_A 597 MKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIP 676 (751)
T ss_dssp HHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCC
T ss_pred HhhccceEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcC
Confidence 99999999999999888776666666789999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHhHHHHHHHHHHhhcCCCcCcEEEEeCCCCcHHHHHHhhcccCCCCCCCHHHHHHHHHHhC
Q psy16627 641 ETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 713 (713)
Q Consensus 641 ~~~~~lp~~d~~~s~~l~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~LvED~~~~~~SY~dfL~~lh~~i 713 (713)
..+.+||++|++.|+++|++|+++|+.|++.+.++|++++++.+..|.++||||++++++||+|||+|||+||
T Consensus 677 ~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l~vvr~~~~~~~~f~~~LvED~~~~~~SY~~fL~~~h~~i 749 (751)
T 3eh1_A 677 QKMTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQI 749 (751)
T ss_dssp SSBCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEEEEEESSSSSHHHHHTTCTTSCBTTBCCHHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHhcCCCcceEEEEeCCCchHHHHHHhCcccCCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999888889999999999999999999999999999999999999986
|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 713 | ||||
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 4e-77 | |
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 6e-55 | |
| d1pd0a2 | 177 | b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast | 6e-37 | |
| d1pd0a1 | 107 | a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar | 2e-28 | |
| d1pd0a4 | 173 | d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccha | 1e-24 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 1e-05 |
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 245 bits (627), Expect = 4e-77
Identities = 88/250 (35%), Positives = 143/250 (57%), Gaps = 10/250 (4%)
Query: 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSL- 181
P PA Y FL+DVSQ + +SG L T LL L S+P D RT I+I+ D+A+H++ +
Sbjct: 1 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 60
Query: 182 ------AEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDS 235
E Q + M + D+++ FLP P +++V+L C I LL ++P F+ +L +
Sbjct: 61 LDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLIT 120
Query: 236 GSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQ--RSNDDPPHMNPAT 293
ALGPAL++A+ L+ GG+I + LPN G G LQ R S + ++
Sbjct: 121 NFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQD 180
Query: 294 DFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQL 353
FYK ++C+ I VDLF+ + Y+D+A+LS +S+F++G H P +SGKN + + +
Sbjct: 181 SFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF 240
Query: 354 DRMFSRYLTR 363
F+++++
Sbjct: 241 STEFAKHISM 250
|
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 173 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.97 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.94 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.9 | |
| d1pd0a1 | 107 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.88 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.78 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.72 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.77 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.63 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 98.02 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 97.92 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 97.9 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 97.79 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 97.74 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 97.73 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 97.62 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 97.53 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.5 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 97.48 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 97.46 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.17 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.14 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 96.9 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 96.82 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 96.52 | |
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 96.33 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 92.64 |
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.3e-52 Score=428.07 Aligned_cols=241 Identities=36% Similarity=0.673 Sum_probs=205.3
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHhhcCCC-CCCceEEEEEEcCeEEEEEcCCC-------CCCCeeeeecC
Q psy16627 124 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEG-------QTQPSQMILTD 195 (713)
Q Consensus 124 ~~pp~~vFvID~s~~a~~sg~l~~~~~sl~~~L~~lp~-~~~~~VglITF~~~V~~y~l~~~-------~~~~q~~vv~d 195 (713)
|+||+|+||||+|+.++++|+++++|++|+++|+.||+ +++++|||||||+.||||+++.. .+++++++++|
T Consensus 1 P~Pp~~vFvID~s~~a~~~g~l~~~~~si~~~l~~l~~~~~~~~VgiItf~~~V~~y~l~~~~~~~~~~~~~~~~~~~~d 80 (252)
T d1pd0a3 1 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD 80 (252)
T ss_dssp CCCCBEEEEEECSHHHHHHTHHHHHHHHHHTTTTTSCCTTSCCEECEEEESSSEEEEECCCGGGC-------CEEECCCC
T ss_pred CCCCEEEEEEECCHHHhhhhHHHHHHHHHHHHHHhCcCCCCCcEEEEEEECCEEEEEEccCCccccccccccccccchhh
Confidence 68999999999999999999999999999999999996 46789999999999999999753 24678899999
Q ss_pred cCccCCCCCCCcceehhhhHHHHHHHHhhCcccccCCCCCCCchHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCC
Q psy16627 196 IDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSR 275 (713)
Q Consensus 196 l~d~f~P~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~ 275 (713)
++|+|+|.|++|+++++||++.|+++|++|+..+.+.+++.+|+|+||++|..+|++.||||++|++|+||.|||+|+.|
T Consensus 81 l~~~~~p~~~~~lv~~~e~~~~i~~~L~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~~gGkI~~f~sg~pt~GpG~l~~r 160 (252)
T d1pd0a3 81 LEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRR 160 (252)
T ss_dssp TTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC-
T ss_pred hhhccCCCCccceeeHHHHHHHHHHHHHhChhhcccCCCCcccHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC-CC-CCCCCCcchHHHHHHHHHHHhhCCeEEEEEEecCCccCchhhcccccCCCceEEEeCCCCCCcchhHHHH
Q psy16627 276 ENPNQR-SN-DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQL 353 (713)
Q Consensus 276 ~~~~~~-s~-~~~~~~~~a~~fY~~La~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~ 353 (713)
++.... .+ ++.++++++.+||++||.+|+++||+||+|+++.+++|+++|+.||+.|||.+++|++|+.....+..+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~~~~y~~f~~~~~~d~~k~ 240 (252)
T d1pd0a3 161 NESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF 240 (252)
T ss_dssp -------------------CCHHHHHHHHHTTTTEEEEEEEEESBCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHH
T ss_pred cccccccCcccchhcccchHHHHHHHHHHHHHCCEEEEEEeccccccCcHHHhhHhhcCCceEEEeCCCCcccHHHHHHH
Confidence 754442 22 3468899999999999999999999999999999999999999999999999999999997555677889
Q ss_pred HHHHHHhhccc
Q psy16627 354 DRMFSRYLTRK 364 (713)
Q Consensus 354 ~~dl~~~l~~~ 364 (713)
.+|+.++++|+
T Consensus 241 ~~dl~~~l~~~ 251 (252)
T d1pd0a3 241 STEFAKHISMD 251 (252)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHhccCC
Confidence 99999999876
|
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|