Psyllid ID: psy1664

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
Protein Sequence
MGKSTADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEIDSNEINLGKMMTLPLTNRDTYTM
Secondary Structure (PSIPRED)
ccHHHHHHHHHEEEccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHcccEEEEEEEccccccccccEEEccccccccccEEEEEEEccccccccccccccEEEEEccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHHHcccEEEEEEEccccccccccEEcccccccccccEEEEEEEEcccccccccccccEEEEEccccccccccccEEEEccccccccccccEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHcccccccccccccccccccccccccccccEEHHHHccccHHHccccEccccccHHHHHHHHHHHHHHHHHccccccccEcHHHHHHHccccEcHHHcEcHHHHHHHHHHccEcEccccccccccccccccccccccccccccccccccccccccccccccccccccccEcEcccEEccccHHHHHHHHHHHccEEEEEEEEHHHHHcccccEccccccEEEEEEEEEEEEEEEcEEEEEEccEEEEEEEccEcccccEccEEEEEcccccccccEEEEccccccccccccccccccccccccccccccccEcEcccEEccccHHHHHHHHHHHccEEEEEEEEHHHHHcccccEccccccEEEEEEEEEEEEEEEcEEEEEEccEEEEEEEccEcccccEccEEEEEccccHHHcccccEEccEccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGKSTADAVATFLKdldlsqssrnhsngvfcdlskafdrvdhsillpklpfygaeKNALSKLTLSELEmrmgvhpdsklpqnrlpllvqlsdpleelpegfdarinwpycptiqeirdqgscgsgwaLGAVEAMSDRVCiasrgkrhvrlssDDLVSCckdcgngcqggfhgkAWKYWVTTGIVsggtyaskqgcrpyeipcerymngshsscqdnepntpecirkcqpgydvsyeddlnfgriayslpaneeTIMREIFrhgpvegsmTIYADMILYKTGIykhvaggplgeHAIRIigwgqeplgegtSSVVKYWLVANSFntnwgenglfrigcrpyeipcerymngsrsscqanepntpecirkcqpgydvsyeddlnfgriayslpaneeTIMREIFrhgpvegsmTIYADMILYKTGIykhvaggplgeHAIRIigwgqeplgegtSSVVKYWLVANSFNTNWGENGLFRIVRGqnecgieaditaglpkigleidsneinlgkmmtlpltnrdtytm
Flexible Loop (DISEMBL)
MGKSTADAVATFLkdldlsqssrnhSNGVFCDLSKAFDRVDHSILlpklpfygaEKNALSKLTLSELEMRMGvhpdsklpqnRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASrgkrhvrlssDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSfntnwgenglFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEIdsneinlgkmmtlpltnrdtytm
Low Complexity Region (SEG)
MGKSTADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEIDSNEINLGKMMTLPLTNRDTYTM
Disordered region (IsUnstruct)
**************************NGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTL*******************LPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYM****************CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMN**************ECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEIDSNEINLGKMMTL**********
Disordered Region (DISOPRED)
***STADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMR************************EELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEIDSNEINL****************
Disordered Region (DISEMBL)
********VATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNG************PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNG***********TPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEIDSNEINLGKMMTLPLTNRDTYTM
Disordered Region (DISPRO)
*GKSTADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPD**********LVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGL**********KMMTLPLTN******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKSTADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEIDSNEINLGKMMTLPLTNRDTYTM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	524	2.2.26 [Sep-21-2011]
A1E295	335	Cathepsin B OS=Sus scrofa	yes	N/A	0.440	0.689	0.556	2e-74
P43157	342	Cathepsin B-like cysteine	N/A	N/A	0.505	0.774	0.48	1e-72
Q5R6D1	339	Cathepsin B OS=Pongo abel	yes	N/A	0.465	0.719	0.521	1e-72
P07858	339	Cathepsin B OS=Homo sapie	yes	N/A	0.461	0.713	0.521	3e-72
Q4R5M2	339	Cathepsin B OS=Macaca fas	N/A	N/A	0.465	0.719	0.521	5e-72
P00787	339	Cathepsin B OS=Rattus nor	yes	N/A	0.463	0.716	0.515	2e-71
P43233	340	Cathepsin B OS=Gallus gal	yes	N/A	0.467	0.720	0.505	6e-71
P10605	339	Cathepsin B OS=Mus muscul	yes	N/A	0.465	0.719	0.501	3e-69
P25792	340	Cathepsin B-like cysteine	N/A	N/A	0.505	0.779	0.465	3e-67
P07688	335	Cathepsin B OS=Bos taurus	yes	N/A	0.440	0.689	0.535	4e-67

>sp|A1E295|CATB_PIG Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1

 Score =  280 bits (717), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/241 (55%), Positives = 177/241 (73%), Gaps = 10/241 (4%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LP+ FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI S G+ +V +S++D++
Sbjct: 80  LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDML 139

Query: 157 SCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
           +CC D CG+GC GGF   AW +W   G+VSGG Y S  GCRPY IP CE ++NGS   C 
Sbjct: 140 TCCGDECGDGCNGGFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCT 199

Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
             E +TP+C + C+PGY  SY++D +FG  +YS+  NE+ IM EI+++GPVEG+ T+Y+D
Sbjct: 200 -GEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSD 258

Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
            + YK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLV NS+NT+WG+NG F+
Sbjct: 259 FLQYKSGVYQHVTGDLMGGHAIRILGWGVE---NGT----PYWLVGNSWNTDWGDNGFFK 311

Query: 335 I 335
           I
Sbjct: 312 I 312

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.
Sus scrofa (taxid: 9823)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 1

>sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1

 Score =  274 bits (701), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/275 (48%), Positives = 177/275 (64%), Gaps = 10/275 (3%)

Query: 63  TLSELEMRMGVHP-DSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGS 121
           +L +  + MG    D+++ +NR P  V   D   E+P  FD+R  WP+C +I +IRDQ  
Sbjct: 56  SLDDARILMGARKEDAEMKRNRRPT-VDHHDLNVEIPSQFDSRKKWPHCKSISQIRDQSR 114

Query: 122 CGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTT 181
           CGS WA GAVEAM+DR+CI S G +   LS+ DL+SCCKDCG+GCQGGF G AW YWV  
Sbjct: 115 CGSCWAFGAVEAMTDRICIQSGGGQSAELSALDLISCCKDCGDGCQGGFPGVAWDYWVKR 174

Query: 182 GIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLN 240
           GIV+GG+  +  GC+PY  P CE +  G + +C      TP+C + CQ GY   YE D +
Sbjct: 175 GIVTGGSKENHTGCQPYPFPKCEHHTKGKYPACGTKIYKTPQCKQTCQKGYKTPYEQDKH 234

Query: 241 FGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIG 300
           +G  +Y++  NE+ I R+I  +GPVE +  +Y D + YK+GIY+HV G  +G HAIRIIG
Sbjct: 235 YGDESYNVQNNEKVIQRDIMMYGPVEAAFDVYEDFLNYKSGIYRHVTGSIVGGHAIRIIG 294

Query: 301 WGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           WG E           YWL+ANS+N +WGE GLFR+
Sbjct: 295 WGVEKR-------TPYWLIANSWNEDWGEKGLFRM 322

Thiol protease. Has a role as a digestive enzyme.

Schistosoma japonicum (taxid: 6182)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q5R6D1|CATB_PONAB Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1

 Score =  274 bits (701), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/255 (52%), Positives = 181/255 (70%), Gaps = 11/255 (4%)

Query: 83  RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
           + P  V  ++ L+ LPE FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +
Sbjct: 67  KPPQRVMFTEDLK-LPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 125

Query: 143 RGKRHVRLSSDDLVSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
                V +S++DL++CC   CG+GC GG+  +AW +W   G+VSGG Y S  GCRPY IP
Sbjct: 126 NAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIP 185

Query: 202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
            CE ++NGS   C   E +TP+C + C+PGY  +Y+ D ++G  +YS+  +E  IM EI+
Sbjct: 186 PCEHHVNGSRPPCT-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSERDIMAEIY 244

Query: 261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
           ++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLVA
Sbjct: 245 KNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVA 297

Query: 321 NSFNTNWGENGLFRI 335
           NS+NT+WG+NG F+I
Sbjct: 298 NSWNTDWGDNGFFKI 312

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P07858|CATB_HUMAN Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3

 Score =  273 bits (697), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 132/253 (52%), Positives = 180/253 (71%), Gaps = 11/253 (4%)

Query: 85  PLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRG 144
           P  V  ++ L+ LP  FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +  
Sbjct: 69  PQRVMFTEDLK-LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNA 127

Query: 145 KRHVRLSSDDLVSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-C 202
              V +S++DL++CC   CG+GC GG+  +AW +W   G+VSGG Y S  GCRPY IP C
Sbjct: 128 HVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPC 187

Query: 203 ERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRH 262
           E ++NGS   C   E +TP+C + C+PGY  +Y+ D ++G  +YS+  +E+ IM EI+++
Sbjct: 188 EHHVNGSRPPCT-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKN 246

Query: 263 GPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANS 322
           GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLVANS
Sbjct: 247 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANS 299

Query: 323 FNTNWGENGLFRI 335
           +NT+WG+NG F+I
Sbjct: 300 WNTDWGDNGFFKI 312

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|Q4R5M2|CATB_MACFA Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1

 Score =  272 bits (695), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 133/255 (52%), Positives = 181/255 (70%), Gaps = 11/255 (4%)

Query: 83  RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
           + P  V  ++ L+ LPE FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +
Sbjct: 67  KPPQRVMFTEDLK-LPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 125

Query: 143 RGKRHVRLSSDDLVSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
                V +S++DL++CC   CG+GC GG+   AW +W   G+VSGG Y S  GCRPY IP
Sbjct: 126 NAHVSVEVSAEDLLTCCGIMCGDGCNGGYPAGAWNFWTRKGLVSGGLYDSHVGCRPYSIP 185

Query: 202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
            CE ++NGS   C   E +TP+C + C+PGY  +Y+ D ++G  +YS+  +E+ IM EI+
Sbjct: 186 PCEHHVNGSRPPCT-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIY 244

Query: 261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
           ++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLVA
Sbjct: 245 KNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVA 297

Query: 321 NSFNTNWGENGLFRI 335
           NS+NT+WG+NG F+I
Sbjct: 298 NSWNTDWGDNGFFKI 312

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P00787|CATB_RAT Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2

 Score =  270 bits (690), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/254 (51%), Positives = 178/254 (70%), Gaps = 11/254 (4%)

Query: 84  LPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASR 143
           LP  V  S+ +  LPE FDAR  W  CPTI +IRDQGSCGS WA GAVEAMSDR+CI + 
Sbjct: 68  LPERVGFSEDIN-LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTN 126

Query: 144 GKRHVRLSSDDLVSCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP- 201
           G+ +V +S++DL++CC   CG+GC GG+   AW +W   G+VSGG Y S  GC PY IP 
Sbjct: 127 GRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPP 186

Query: 202 CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFR 261
           CE ++NGS   C   E +TP+C + C+ GY  SY++D ++G  +YS+  +E+ IM EI++
Sbjct: 187 CEHHVNGSRPPCT-GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYK 245

Query: 262 HGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN 321
           +GPVEG+ T+++D + YK+G+YKH AG  +G HAIRI+GWG E       + V YWLVAN
Sbjct: 246 NGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGVPYWLVAN 298

Query: 322 SFNTNWGENGLFRI 335
           S+N +WG+NG F+I
Sbjct: 299 SWNVDWGDNGFFKI 312

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P43233|CATB_CHICK Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1

 Score =  268 bits (686), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 129/255 (50%), Positives = 174/255 (68%), Gaps = 10/255 (3%)

Query: 83  RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
           + P  V  ++ ++ LP+ FD R  WP CPTI EIRDQGSCGS WA GAVEA+SDR+C+ +
Sbjct: 67  KAPERVDFAEDMD-LPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHT 125

Query: 143 RGKRHVRLSSDDLVSCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
             K  V +S++DL+SCC  +CG GC GG+   AW+YW   G+VSGG Y S  GCR Y IP
Sbjct: 126 NAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVSGGLYDSHVGCRAYTIP 185

Query: 202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
            CE ++NGS   C      TP C R C+PGY  SY++D ++G  +Y +P +E+ IM EI+
Sbjct: 186 PCEHHVNGSRPPCTGEGGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSEKEIMAEIY 245

Query: 261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
           ++GPVEG+  +Y D ++YK+G+Y+HV+G  +G HAIRI+GWG E    GT     YWL A
Sbjct: 246 KNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGGHAIRILGWGVE---NGT----PYWLAA 298

Query: 321 NSFNTNWGENGLFRI 335
           NS+NT+WG  G F+I
Sbjct: 299 NSWNTDWGITGFFKI 313

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P10605|CATB_MOUSE Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2

 Score =  263 bits (672), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/255 (50%), Positives = 175/255 (68%), Gaps = 11/255 (4%)

Query: 83  RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
           +LP  V   + ++ LPE FDAR  W  CPTI +IRDQGSCGS WA GAVEA+SDR CI +
Sbjct: 67  KLPGRVAFGEDID-LPETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHT 125

Query: 143 RGKRHVRLSSDDLVSCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
            G+ +V +S++DL++CC   CG+GC GG+   AW +W   G+VSGG Y S  GC PY IP
Sbjct: 126 NGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKKGLVSGGVYNSHVGCLPYTIP 185

Query: 202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
            CE ++NGS   C   E +TP C + C+ GY  SY++D +FG  +YS+  + + IM EI+
Sbjct: 186 PCEHHVNGSRPPCT-GEGDTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSVKEIMAEIY 244

Query: 261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
           ++GPVEG+ T+++D + YK+G+YKH AG  +G HAIRI+GWG E       + V YWL A
Sbjct: 245 KNGPVEGAFTVFSDFLTYKSGVYKHEAGDMMGGHAIRILGWGVE-------NGVPYWLAA 297

Query: 321 NSFNTNWGENGLFRI 335
           NS+N +WG+NG F+I
Sbjct: 298 NSWNLDWGDNGFFKI 312

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1

 Score =  256 bits (654), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 170/275 (61%), Gaps = 10/275 (3%)

Query: 63  TLSELEMRMGVHPDS-KLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGS 121
           +L +  ++MG   +   L + R P  V  +D   E+P  FD+R  WP C +I  IRDQ  
Sbjct: 55  SLDDARIQMGARREEPDLRRKRRPT-VDHNDWNVEIPSNFDSRKKWPGCKSIATIRDQSR 113

Query: 122 CGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTT 181
           CGS W+ GAVEAMSDR CI S GK++V LS+ DL++CC+ CG GC+GG  G AW YWV  
Sbjct: 114 CGSCWSFGAVEAMSDRSCIQSGGKQNVELSAVDLLTCCESCGLGCEGGILGPAWDYWVKE 173

Query: 182 GIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLN 240
           GIV+  +  +  GC PY  P CE +  G +  C     NTP C + CQ  Y   Y  D +
Sbjct: 174 GIVTASSKENHTGCEPYPFPKCEHHTKGKYPPCGSKIYNTPRCKQTCQRKYKTPYTQDKH 233

Query: 241 FGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIG 300
            G+ +Y++  +E+ I +EI ++GPVE S T+Y D + YK+GIYKH+ G  LG HAIRIIG
Sbjct: 234 RGKSSYNVKNDEKAIQKEIMKYGPVEASFTVYEDFLNYKSGIYKHITGEALGGHAIRIIG 293

Query: 301 WGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           WG E       +   YWL+ANS+N +WGENG FRI
Sbjct: 294 WGVE-------NKTPYWLIANSWNEDWGENGYFRI 321

Thiol protease. Has a role as a digestive enzyme.

Schistosoma mansoni (taxid: 6183)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P07688|CATB_BOVIN Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5

 Score =  256 bits (653), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 129/241 (53%), Positives = 172/241 (71%), Gaps = 10/241 (4%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI S G+ +V +S++D++
Sbjct: 80  LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 139

Query: 157 SCCKDCGNGCQGG-FHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
           +CC         G F   AW +W   G+VSGG Y S  GCRPY IP CE ++NGS   C 
Sbjct: 140 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 199

Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
             E +TP+C + C+PGY  SY++D +FG  +YS+  NE+ IM EI+++GPVEG+ ++Y+D
Sbjct: 200 -GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSD 258

Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
            +LYK+G+Y+HV+G  +G HAIRI+GWG E    GT     YWLV NS+NT+WG+NG F+
Sbjct: 259 FLLYKSGVYQHVSGEIMGGHAIRILGWGVE---NGT----PYWLVGNSWNTDWGDNGFFK 311

Query: 335 I 335
           I
Sbjct: 312 I 312

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
312374701	335	hypothetical protein AND_15621 [Anophele	0.532	0.832	0.527	3e-82
14141821	340	probable cathepsin B-like cysteine prote	0.511	0.788	0.559	3e-82
347972086	337	AGAP004533-PA [Anopheles gambiae str. PE	0.530	0.824	0.537	4e-82
91078958	334	PREDICTED: similar to cathepsin b [Tribo	0.526	0.826	0.529	7e-82
195058549	340	GH17748 [Drosophila grimshawi] gi|193896	0.517	0.797	0.552	1e-81
170028910	334	cathepsin L [Culex quinquefasciatus] gi|	0.530	0.832	0.515	2e-81
45822203	328	cathepsin B-like proteinase [Diabrotica	0.522	0.835	0.519	3e-81
125981197	338	GA10694 [Drosophila pseudoobscura pseudo	0.511	0.792	0.569	1e-80
157167366	340	cathepsin b [Aedes aegypti] gi|54289254|	0.532	0.820	0.515	1e-80
161343863	340	TPA_inf: cathepsin B [Myzus persicae]	0.528	0.814	0.524	2e-80

>gi|312374701|gb|EFR22198.1| hypothetical protein AND_15621 [Anopheles darlingi]

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/290 (52%), Positives = 198/290 (68%), Gaps = 11/290 (3%)

Query: 48  KLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQ-LSDPLEELPEGFDARIN 106
           K   + A +N    ++LS +   MGVH D+   + R P  V  LS  +++LPE FD+R  
Sbjct: 35  KASTWRAGRNFHPDVSLSYIRGLMGVHQDAY--KFREPEFVHDLSADVDDLPENFDSREQ 92

Query: 107 WPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGC 166
           WP CPTI+EIRDQGSCGS WA GAVEAMSDRVCIAS GK H R S++DLVSCC  CG GC
Sbjct: 93  WPNCPTIREIRDQGSCGSCWAFGAVEAMSDRVCIASGGKIHFRFSAEDLVSCCHTCGFGC 152

Query: 167 QGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECIR 225
            GGF G AW YWV  G+VSGG + S  GC+PY I PCE ++NG+  SC+     TP+C++
Sbjct: 153 NGGFPGAAWSYWVHKGLVSGGPFGSNLGCQPYAIAPCEHHVNGTRPSCEGEGGKTPKCVK 212

Query: 226 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKH 285
           KCQ  Y V Y  D  +G  +YS+P +E+ I +EI  +GPVEG+ T+Y D++ YK G+Y+H
Sbjct: 213 KCQDSYTVPYAKDKRYGSKSYSIPRHEDQIRKEIMTNGPVEGAFTVYEDLLHYKEGVYQH 272

Query: 286 VAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           V G  LG HAIRI+GWG E       +  KYWL+ANS+N++WG+NG F+I
Sbjct: 273 VTGKMLGGHAIRILGWGVE-------NNTKYWLIANSWNSDWGDNGFFKI 315

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|14141821|gb|AAK07477.2|AF329480_1 probable cathepsin B-like cysteine proteinase precursor [Glossina morsitans morsitans] gi|289743431|gb|ADD20463.1| putative cathepsin B-like cysteine proteinase precursor [Glossina morsitans morsitans]

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/286 (55%), Positives = 187/286 (65%), Gaps = 18/286 (6%)

Query: 59  LSKLT-LSELEMRMGVHPDSK---LPQNRLPL----LVQLSDPLEELPEGFDARINWPYC 110
             KLT +S     MGVHPD+    LP  R+ L    LV L + +  +P+ FD+R  WP+C
Sbjct: 44  FHKLTPMSHYRQLMGVHPDAHNYALPDKRMVLREEELVGLGNNM--IPKDFDSRKQWPHC 101

Query: 111 PTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGF 170
           PTI EIRDQGSCGS WA GAVEAMSDRVCI S G  +   S+DDLVSCC  CG GC GGF
Sbjct: 102 PTIWEIRDQGSCGSCWAFGAVEAMSDRVCIHSNGTVNFHFSADDLVSCCHTCGFGCNGGF 161

Query: 171 HGKAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECIRKCQP 229
            G AW YWV  GIVSGG Y S QGCRPYEI PCE ++NG+   C+     TP C  KCQ 
Sbjct: 162 PGAAWSYWVRKGIVSGGPYGSSQGCRPYEIAPCEHHVNGTRPPCEKEYGKTPRCQHKCQA 221

Query: 230 GYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG 289
            Y V Y+ D +FG  AYS+  N   I  EI  HGPVEG+ T+Y D+ILYK G+Y+HV G 
Sbjct: 222 SYKVDYKTDKHFGSRAYSISKNVHDIQEEIMTHGPVEGAFTVYEDLILYKDGVYEHVHGK 281

Query: 290 PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            LG HAIRIIGWG E         + YWLVANS+NT+WG NG F+I
Sbjct: 282 ELGGHAIRIIGWGVE-------KDIPYWLVANSWNTDWGNNGFFKI 320

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347972086|ref|XP_313835.5| AGAP004533-PA [Anopheles gambiae str. PEST] gi|333469165|gb|EAA09183.5| AGAP004533-PA [Anopheles gambiae str. PEST]

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 156/290 (53%), Positives = 200/290 (68%), Gaps = 12/290 (4%)

Query: 48  KLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLP-LLVQLSDPLEELPEGFDARIN 106
           K   + A +N     +L+ +   MGVHPD+   + R P +L  LSD  +ELPE FD+R  
Sbjct: 38  KATTWRAGQNFHPDTSLTYIRGLMGVHPDAD--KFREPEILHDLSDG-DELPENFDSREQ 94

Query: 107 WPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGC 166
           WP CPTI+EIRDQGSCGS WA GAVEAMSDRVC+AS GK H R S++DLVSCC  CG GC
Sbjct: 95  WPNCPTIREIRDQGSCGSCWAFGAVEAMSDRVCVASGGKIHFRFSAEDLVSCCHTCGFGC 154

Query: 167 QGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECIR 225
            GGF G AW YWV  G+VSGG + S  GC+PY I PCE ++NG+  SC+     TP+C++
Sbjct: 155 NGGFPGAAWSYWVRKGLVSGGPFGSNLGCQPYAIAPCEHHVNGTRPSCEGEGGKTPKCVK 214

Query: 226 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKH 285
           KCQ  Y+V Y+ D  FG  +YS+  +E  I +EI  +GPVEG+ T+Y D++ YK G+Y+H
Sbjct: 215 KCQESYNVPYQKDKRFGASSYSIARHEAQIQKEIMTNGPVEGAFTVYEDLLHYKEGVYQH 274

Query: 286 VAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           V G  LG HAIRI+GWG E    GT    KYWL+ANS+N++WG+NG F+I
Sbjct: 275 VTGKMLGGHAIRILGWGVE---NGT----KYWLIANSWNSDWGDNGFFKI 317

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078958|ref|XP_974220.1| PREDICTED: similar to cathepsin b [Tribolium castaneum] gi|270004841|gb|EFA01289.1| cathepsin B precursor [Tribolium castaneum]

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 154/291 (52%), Positives = 200/291 (68%), Gaps = 15/291 (5%)

Query: 48  KLPFYGAEKNALSKLTLSELEMRMGVHPDSK--LPQNRLPLLVQLSDPLEELPEGFDARI 105
           K   + A  N    + +S +   MGV P+SK  +P  +  LL  +     E+P+ FDAR 
Sbjct: 34  KQSTWKAGPNFAENVPMSYIRRLMGVPPNSKYHMPSVKRHLLDAM-----EIPDDFDARK 88

Query: 106 NWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNG 165
            WP CPTI+EIRDQGSCGS WA GAVEAMSDRVCI S+G  +VRLS+DDLVSCC  CG G
Sbjct: 89  QWPNCPTIREIRDQGSCGSCWAFGAVEAMSDRVCIHSKGAVNVRLSADDLVSCCYSCGMG 148

Query: 166 CQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECI 224
           C GGF G AW YWV  GIVSGG++ S QGCRPYEI PCE ++NG+   C  ++  TP C 
Sbjct: 149 CNGGFPGAAWHYWVNKGIVSGGSFGSNQGCRPYEIAPCEHHVNGTRPPCTGDDNKTPSCK 208

Query: 225 RKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYK 284
           ++C+ GY+V Y+ D NFG+ AYS+ +  + I +EI  +GPVEG+  +Y D++ YK G+Y+
Sbjct: 209 QQCEKGYNVPYKKDKNFGKEAYSISSEVQQIQKEIMTNGPVEGAFEVYEDLLSYKKGVYQ 268

Query: 285 HVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           HV G  LG HAIRI+GWG E   +GT     YWL+ANS+N++WG+NG F+I
Sbjct: 269 HVKGEALGGHAIRILGWGTE---KGTP----YWLIANSWNSDWGDNGTFKI 312

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195058549|ref|XP_001995463.1| GH17748 [Drosophila grimshawi] gi|193896249|gb|EDV95115.1| GH17748 [Drosophila grimshawi]

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/284 (55%), Positives = 191/284 (67%), Gaps = 13/284 (4%)

Query: 56  KNALSKLTLSELEMRMGVHPDSK---LPQNRLPLLVQLSDPLEELPEGFDARINWPYCPT 112
           +N  + ++   +   MGVHPDS    LP+ R  L     D  ++LPE FD+  NWP CPT
Sbjct: 46  RNFDAAVSEHHIRALMGVHPDSHKFTLPEKRELLGADGED--KDLPEEFDSSKNWPNCPT 103

Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
           I+EIRDQGSCGS WA GAVEAMSDRVCI S    +   S+DDLV+CC  CG GC GGF G
Sbjct: 104 IREIRDQGSCGSCWAFGAVEAMSDRVCIHSNATVNFHFSADDLVTCCHTCGFGCNGGFPG 163

Query: 173 KAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
            AW YW T GIVSGG+Y S +GCRPYE+ PCE +++G    C     +TP C  +CQP Y
Sbjct: 164 AAWSYWTTRGIVSGGSYNSTEGCRPYEVEPCEHHVDGPRPPCHSG--STPHCKHQCQPNY 221

Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPL 291
            V YE D +FG  +YS+  N   I REI  +GPVEG+ T+Y D+ILYKTG+Y+HV G  L
Sbjct: 222 SVDYEKDKHFGASSYSINRNPRNIQREIMTNGPVEGAFTVYEDLILYKTGVYQHVHGKQL 281

Query: 292 GEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           G HAIRIIGWG    GE   S V YWL+ANS+NT+WG+NG FRI
Sbjct: 282 GGHAIRIIGWGV--WGE---SKVPYWLIANSWNTDWGDNGFFRI 320

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028910|ref|XP_001842337.1| cathepsin L [Culex quinquefasciatus] gi|167879387|gb|EDS42770.1| cathepsin L [Culex quinquefasciatus]

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/289 (51%), Positives = 200/289 (69%), Gaps = 11/289 (3%)

Query: 48  KLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINW 107
           K   + A +N      +S +   MGVH D+   +   P+++   D  ++LPE FDAR  W
Sbjct: 36  KATTWRAGRNFHPDTPMSYIRGLMGVHKDAD--KFMPPVMLHDLDEGDDLPENFDAREQW 93

Query: 108 PYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQ 167
           P CPTI+EIRDQGSCGS WA GAVEAMSDR+CI S+GK H R+S++DLVSCC  CG GC 
Sbjct: 94  PNCPTIREIRDQGSCGSCWAFGAVEAMSDRICIHSKGKVHFRVSAEDLVSCCHTCGFGCN 153

Query: 168 GGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECIRK 226
           GGF G AW YWV  G+VSGG Y S QGC+PY I PCE ++NG+   C + E  TP+C++K
Sbjct: 154 GGFPGAAWSYWVRKGLVSGGPYGSDQGCQPYAISPCEHHVNGTRGPC-NGEGKTPKCVKK 212

Query: 227 CQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHV 286
           CQ  Y+V Y  D  FG+ +YS+ ++E+ I +E+F +GPVEG+ T+Y D++ YK G+Y+H 
Sbjct: 213 CQASYNVPYAKDKFFGKSSYSIASHEQQIQKELFTNGPVEGAFTVYEDLLNYKEGVYQHT 272

Query: 287 AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           AG  LG HAIRI+GWG E       +  K+WL+ANS+N++WG+NG F+I
Sbjct: 273 AGKMLGGHAIRILGWGVE-------NDTKFWLIANSWNSDWGDNGYFKI 314

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45822203|emb|CAE47498.1| cathepsin B-like proteinase [Diabrotica virgifera virgifera]

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 148/285 (51%), Positives = 194/285 (68%), Gaps = 11/285 (3%)

Query: 52  YGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCP 111
           + A +N     ++  +   MGV PD K   N +P ++       E+P  FDAR  WP+CP
Sbjct: 35  WTAGRNFAQDKSMDYIIKLMGVLPDHK---NYMPPVLTHKLEALEIPADFDARQQWPHCP 91

Query: 112 TIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFH 171
           TI+EIRDQGSCGS WA GAVEAMSDRVCI S G+ +   SSDDLVSCC  CG GC GG+ 
Sbjct: 92  TIREIRDQGSCGSCWAFGAVEAMSDRVCIHSNGESNFHFSSDDLVSCCWTCGMGCNGGYP 151

Query: 172 GKAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECIRKCQPG 230
           G AW YWV  G+VSGG Y +KQGCRPYEI PCE + NGS  +C  +E NTP+C + C+  
Sbjct: 152 GAAWHYWVRKGLVSGGQYGTKQGCRPYEIPPCEHHTNGSRPACDASEGNTPKCAKSCESN 211

Query: 231 YDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGP 290
           Y ++Y +DL+FG  AYS+ ++ + I  EI ++GPVEG+ ++YAD + YKTG+Y+H+ G  
Sbjct: 212 YKINYSNDLHFGSKAYSISSDVKQIQAEILQNGPVEGAFSVYADFVNYKTGVYQHIKGQF 271

Query: 291 LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           LG HAIRI GWG E       +   YWL+ANS+NT+WG++G F+I
Sbjct: 272 LGGHAIRIFGWGVE-------NNTPYWLIANSWNTDWGDSGTFKI 309

Source: Diabrotica virgifera virgifera

Species: Diabrotica virgifera

Genus: Diabrotica

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125981197|ref|XP_001354605.1| GA10694 [Drosophila pseudoobscura pseudoobscura] gi|54642915|gb|EAL31659.1| GA10694 [Drosophila pseudoobscura pseudoobscura]

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/281 (56%), Positives = 190/281 (67%), Gaps = 13/281 (4%)

Query: 61  KLTLSELEMR--MGVHPDSK---LPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQE 115
           K ++SE  +R  MGVHPD+    LP+ R+ L    +D   ++PE FDAR  WP CPTI E
Sbjct: 45  KESVSEEYIRGLMGVHPDAHKFALPEKRIVLGDLYADDGVDIPEEFDARKAWPNCPTIGE 104

Query: 116 IRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAW 175
           IRDQGSCGS WA GAVEAMSDRVCI S GK +  LS+DDLVSCC  CG GC GGF G AW
Sbjct: 105 IRDQGSCGSCWAFGAVEAMSDRVCIHSEGKVNFHLSADDLVSCCHICGFGCNGGFPGAAW 164

Query: 176 KYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVS 234
            YW   GIVSGG Y S QGCRPYEI PCE ++NG+   C     +TP C  KCQ  Y V 
Sbjct: 165 SYWTRKGIVSGGPYGSTQGCRPYEIAPCEHHVNGTRPPCSHG--STPSCQHKCQASYSVE 222

Query: 235 YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEH 294
           Y  D NFG  +YS+  N   I +EI  +GPVEG+ T+Y D+ILYK+G+Y+H  G  LG H
Sbjct: 223 YAKDKNFGSKSYSVRRNVAEIQQEIMTNGPVEGAFTVYEDLILYKSGVYQHEHGKELGGH 282

Query: 295 AIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           AIRI+GWG    GE   S V YWL+ NS+NT+WG+NG FRI
Sbjct: 283 AIRILGWGV--WGE---SKVPYWLIGNSWNTDWGDNGFFRI 318

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167366|ref|XP_001653890.1| cathepsin b [Aedes aegypti] gi|54289254|gb|AAV31917.1| lysosomal cathepsin B [Aedes aegypti] gi|108874249|gb|EAT38474.1| AAEL009637-PA [Aedes aegypti]

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/289 (51%), Positives = 196/289 (67%), Gaps = 10/289 (3%)

Query: 48  KLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINW 107
           K   + A  N   + ++S +   MGVH D+   +   P+ +   +  ++ PE FD+R  W
Sbjct: 41  KATTWKAGPNFSPETSMSFIRGLMGVHKDAD--KFMPPVYLHEMEADDDFPENFDSRTQW 98

Query: 108 PYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQ 167
           P CPTI EIRDQGSCGS WA GAVEAMSDR+CI S GK H R+SS+DLVSCC  CG GC 
Sbjct: 99  PNCPTIGEIRDQGSCGSCWAFGAVEAMSDRICIHSEGKVHFRVSSEDLVSCCHTCGFGCN 158

Query: 168 GGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECIRK 226
           GGF G AW YWV  G+VSGG + S QGC+PY I PCE ++NGS  SC+     TP+C++K
Sbjct: 159 GGFPGAAWSYWVRKGLVSGGPFGSDQGCQPYAIAPCEHHVNGSRPSCEGEGGKTPKCVKK 218

Query: 227 CQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHV 286
           CQ  Y+V Y  D  +G+ +YS+  +E+ I +EI  +GPVEG+ T+Y D++ YK G+Y HV
Sbjct: 219 CQASYNVPYAKDKMYGKSSYSIANHEKQIQKEIMTNGPVEGAFTVYEDLLNYKEGVYHHV 278

Query: 287 AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            G  LG HAIRI+GWG E   +GT    KYWL+ANS+N++WG+NG F+I
Sbjct: 279 HGKMLGGHAIRILGWGVE---DGT----KYWLIANSWNSDWGDNGFFKI 320

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161343863|tpg|DAA06112.1| TPA_inf: cathepsin B [Myzus persicae]

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 150/286 (52%), Positives = 197/286 (68%), Gaps = 9/286 (3%)

Query: 51  FYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYC 110
           ++ A +N      +S L+  MGVH +S     +L  LV  +D   +LPE FDAR +WP C
Sbjct: 44  YWSAGRNFHKNTPMSYLKGLMGVH-ESNAHYPKLEQLVSYTDTPTDLPENFDAREHWPNC 102

Query: 111 PTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGF 170
           PTI+E+RDQGSCGS WA GAVEAMSDRVCI S+G ++   S+++LVSCC+ CG GC GGF
Sbjct: 103 PTIREVRDQGSCGSCWAFGAVEAMSDRVCIHSKGAKNFHFSAENLVSCCRTCGFGCNGGF 162

Query: 171 HGKAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECIRKCQP 229
            G AW YW T GIVSGG Y SK GC PYEI PCE ++NG+   C++    TP C++KC+ 
Sbjct: 163 PGAAWHYWKTKGIVSGGPYGSKMGCIPYEIAPCEHHVNGTRGPCKEGG-KTPACVKKCED 221

Query: 230 GYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG 289
           GY V Y  DL+ G+ AYSL  + + I +EI+ +GPVEG+ T+Y D I Y+ G+YKHVAG 
Sbjct: 222 GYKVPYAQDLHRGKSAYSLGNDVDQIRQEIYTNGPVEGAFTVYEDFIAYRAGVYKHVAGK 281

Query: 290 PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            LG HAIRI+GWG +      +  + YWLVANS+N++WG +G F+I
Sbjct: 282 ALGGHAIRILGWGVQ------NGEIPYWLVANSWNSDWGSDGFFKI 321

Source: Myzus persicae

Species: Myzus persicae

Genus: Myzus

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
FB|FBgn0030521	340	CtsB1 "Cathepsin B1" [Drosophi	0.522	0.805	0.538	1.4e-78
ZFIN|ZDB-GENE-040426-2650	330	ctsba "cathepsin B, a" [Danio	0.467	0.742	0.535	7.9e-78
UNIPROTKB|E2R6Q7	339	CTSB "Uncharacterized protein"	0.465	0.719	0.537	6.3e-76
UNIPROTKB|P07688	335	CTSB "Cathepsin B" [Bos taurus	0.440	0.689	0.556	1.7e-75
UNIPROTKB|A1E295	335	CTSB "Cathepsin B" [Sus scrofa	0.440	0.689	0.556	2.7e-75
UNIPROTKB|F1N9D7	340	CTSB "Cathepsin B" [Gallus gal	0.467	0.720	0.517	5.1e-74
UNIPROTKB|P07858	339	CTSB "Cathepsin B" [Homo sapie	0.461	0.713	0.521	5.9e-73
UNIPROTKB|Q6IN22	339	Ctsb "Cathepsin B" [Rattus nor	0.465	0.719	0.517	5.3e-72
RGD|621509	339	Ctsb "cathepsin B" [Rattus nor	0.463	0.716	0.519	8.6e-72
UNIPROTKB|P43233	340	CTSB "Cathepsin B" [Gallus gal	0.467	0.720	0.505	8.6e-72

FB|FBgn0030521 CtsB1 "Cathepsin B1" [Drosophila melanogaster (taxid:7227)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 153/284 (53%), Positives = 184/284 (64%)

Query:    56 KNALSKLTLSELEMRMGVHPDSK---LPQNRLPLLVQLSDPLEELPEGFDARINWPYCPT 112
             +N  + +T   +   MGVHPD+    LP  R  L     + ++ELPE FD+R  WP CPT
Sbjct:    43 RNFDASVTEGHIRRLMGVHPDAHKFALPDKREVLGDLYVNSVDELPEEFDSRKQWPNCPT 102

Query:   113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
             I EIRDQGSCGS WA GAVEAMSDRVCI S GK +   S+DDLVSCC  CG GC GGF G
Sbjct:   103 IGEIRDQGSCGSCWAFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCHTCGFGCNGGFPG 162

Query:   173 KAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
              AW YW   GIVSGG Y S QGCRPYEI PCE ++NG+   C      TP+C   CQ GY
Sbjct:   163 AAWSYWTRKGIVSGGPYGSNQGCRPYEISPCEHHVNGTRPPCAHGG-RTPKCSHVCQSGY 221

Query:   232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPL 291
              V Y  D +FG  +YS+  N   I  EI  +GPVEG+ T+Y D+ILYK G+Y+H  G  L
Sbjct:   222 TVDYAKDKHFGSKSYSVRRNVREIQEEIMTNGPVEGAFTVYEDLILYKDGVYQHEHGKEL 281

Query:   292 GEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
             G HAIRI+GWG    GE     + YWL+ NS+NT+WG++G FRI
Sbjct:   282 GGHAIRILGWGV--WGE---EKIPYWLIGNSWNTDWGDHGFFRI 320

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0006508 "proteolysis" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2650 ctsba "cathepsin B, a" [Danio rerio (taxid:7955)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 136/254 (53%), Positives = 183/254 (72%)

Query:    83 RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
             +LP++VQ ++ L+ LP+ FDAR  WP CPT++EIRDQGSCGS WA GA EA+SDRVCI S
Sbjct:    66 KLPVMVQYTEGLK-LPKNFDAREQWPNCPTLKEIRDQGSCGSCWAFGAAEAISDRVCIQS 124

Query:   143 RGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEI-P 201
               K  V +SS DL++CC  CG GC GG+   AW +W T G+V+GG Y S  GCRPY I P
Sbjct:   125 NAKVSVEISSQDLLTCCDSCGMGCNGGYPSAAWDFWTTDGLVTGGLYNSHIGCRPYTIEP 184

Query:   202 CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFR 261
             CE ++NGS   C     +TP C  KC+PGY   Y++D +FG+ +YS+P+N+  IM E+F+
Sbjct:   185 CEHHVNGSRPPCTGEGGDTPNCDMKCEPGYSPLYKEDKHFGKTSYSVPSNQNGIMAELFK 244

Query:   262 HGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN 321
             +GPVE + T+Y D +LYK+G+Y+H++G  LG HAI+I+GWG+E    G    V YWL AN
Sbjct:   245 NGPVEAAFTVYEDFLLYKSGVYQHMSGSALGGHAIKILGWGEE---NG----VPYWLAAN 297

Query:   322 SFNTNWGENGLFRI 335
             S+NT+WG+NG F+I
Sbjct:   298 SWNTDWGDNGYFKI 311

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0031101 "fin regeneration" evidence=IEP

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E2R6Q7 CTSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 137/255 (53%), Positives = 185/255 (72%)

Query:    83 RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
             +LP  VQ +  L  LPE FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +
Sbjct:    67 KLPQRVQFAKNLI-LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRT 125

Query:   143 RGKRHVRLSSDDLVSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
              G  +V +S++D+++CC D CG+GC GGF  +AW +W   G+VSGG Y S  GCRPY IP
Sbjct:   126 NGHVNVEVSAEDMLTCCGDQCGDGCNGGFPAEAWNFWTKQGLVSGGLYDSHVGCRPYSIP 185

Query:   202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
              CE ++NGS   C   E +TP+C + C+PGY  SY++D ++G  +YS+  NE+ IM EI+
Sbjct:   186 PCEHHVNGSRPPCT-GEGDTPKCSKICEPGYSPSYKEDKHYGCSSYSVSDNEKEIMAEIY 244

Query:   261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
             ++GPVE + T+Y+D +LYK+G+Y+HV G  +G HA+RI+GWG E   +GT     YWLV 
Sbjct:   245 KNGPVEAAFTVYSDFLLYKSGVYQHVTGEMMGGHAVRILGWGVE---DGTP----YWLVG 297

Query:   321 NSFNTNWGENGLFRI 335
             NS+NT+WG+NG F+I
Sbjct:   298 NSWNTDWGDNGFFKI 312

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

UNIPROTKB|P07688 CTSB "Cathepsin B" [Bos taurus (taxid:9913)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 134/241 (55%), Positives = 179/241 (74%)

Query:    97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
             LPE FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI S G+ +V +S++D++
Sbjct:    80 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 139

Query:   157 SCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
             +CC  +CG+GC GGF   AW +W   G+VSGG Y S  GCRPY IP CE ++NGS   C 
Sbjct:   140 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 199

Query:   215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
               E +TP+C + C+PGY  SY++D +FG  +YS+  NE+ IM EI+++GPVEG+ ++Y+D
Sbjct:   200 -GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSD 258

Query:   275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
              +LYK+G+Y+HV+G  +G HAIRI+GWG E    GT     YWLV NS+NT+WG+NG F+
Sbjct:   259 FLLYKSGVYQHVSGEIMGGHAIRILGWGVE---NGTP----YWLVGNSWNTDWGDNGFFK 311

Query:   335 I 335
             I
Sbjct:   312 I 312

GO:0042470 "melanosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

UNIPROTKB|A1E295 CTSB "Cathepsin B" [Sus scrofa (taxid:9823)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 134/241 (55%), Positives = 177/241 (73%)

Query:    97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
             LP+ FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI S G+ +V +S++D++
Sbjct:    80 LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDML 139

Query:   157 SCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
             +CC D CG+GC GGF   AW +W   G+VSGG Y S  GCRPY IP CE ++NGS   C 
Sbjct:   140 TCCGDECGDGCNGGFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCT 199

Query:   215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
               E +TP+C + C+PGY  SY++D +FG  +YS+  NE+ IM EI+++GPVEG+ T+Y+D
Sbjct:   200 -GEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSD 258

Query:   275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
              + YK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLV NS+NT+WG+NG F+
Sbjct:   259 FLQYKSGVYQHVTGDLMGGHAIRILGWGVE---NGTP----YWLVGNSWNTDWGDNGFFK 311

Query:   335 I 335
             I
Sbjct:   312 I 312

GO:0005615 "extracellular space" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1N9D7 CTSB "Cathepsin B" [Gallus gallus (taxid:9031)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 132/255 (51%), Positives = 178/255 (69%)

Query:    83 RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
             +LP  V  +  ++ LP+ FD+R  WP CPTI EIRDQGSCGS WA GAVEA+SDR+C+ +
Sbjct:    67 KLPERVDFAADMD-LPDTFDSRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHT 125

Query:   143 RGKRHVRLSSDDLVSCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
               K  V +S++DL+SCC  +CG GC GG+   AW+YW   G+VSGG Y S  GCRPY IP
Sbjct:   126 NAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVSGGLYDSHVGCRPYTIP 185

Query:   202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
              CE ++NGS   C      TP C R C+PGY  SY++D ++G  +Y +P +E+ IM EI+
Sbjct:   186 PCEHHVNGSRPPCTGEGGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSEKEIMAEIY 245

Query:   261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
             ++GPVEG+  +Y D ++YK+G+Y+HV+G  +G HAIRI+GWG E    GT     YWL A
Sbjct:   246 KNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGGHAIRILGWGVE---NGTP----YWLAA 298

Query:   321 NSFNTNWGENGLFRI 335
             NS+NT+WG+NG F+I
Sbjct:   299 NSWNTDWGDNGFFKI 313

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

UNIPROTKB|P07858 CTSB "Cathepsin B" [Homo sapiens (taxid:9606)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 132/253 (52%), Positives = 180/253 (71%)

Query:    85 PLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRG 144
             P  V  ++ L+ LP  FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +  
Sbjct:    69 PQRVMFTEDLK-LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNA 127

Query:   145 KRHVRLSSDDLVSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-C 202
                V +S++DL++CC   CG+GC GG+  +AW +W   G+VSGG Y S  GCRPY IP C
Sbjct:   128 HVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPC 187

Query:   203 ERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRH 262
             E ++NGS   C   E +TP+C + C+PGY  +Y+ D ++G  +YS+  +E+ IM EI+++
Sbjct:   188 EHHVNGSRPPCT-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKN 246

Query:   263 GPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANS 322
             GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLVANS
Sbjct:   247 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGTP----YWLVANS 299

Query:   323 FNTNWGENGLFRI 335
             +NT+WG+NG F+I
Sbjct:   300 WNTDWGDNGFFKI 312

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0006508 "proteolysis" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEP

GO:0008234 "cysteine-type peptidase activity" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005622 "intracellular" evidence=TAS

GO:0036021 "endolysosome lumen" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0008233 "peptidase activity" evidence=IDA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IDA

GO:0005615 "extracellular space" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q6IN22 Ctsb "Cathepsin B" [Rattus norvegicus (taxid:10116)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 132/255 (51%), Positives = 179/255 (70%)

Query:    83 RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
             +LP  V  S+ +  LPE FDAR  W  CPTI +IRDQGSCGS WA GAVEAMSDR+CI +
Sbjct:    67 KLPERVGFSEDIN-LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHT 125

Query:   143 RGKRHVRLSSDDLVSCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
              G+ +V +S++DL++CC   CG+GC GG+   AW +W   G+VSGG Y S  GC PY IP
Sbjct:   126 NGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIP 185

Query:   202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
              CE ++NGS   C   E +TP+C + C+ GY  SY++D ++G  +YS+  +E+ IM EI+
Sbjct:   186 PCEHHVNGSRPPCT-GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIY 244

Query:   261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
             ++GPVEG+ T+++D + YK+G+YKH AG  +G HAIRI+GWG E    G    V YWLVA
Sbjct:   245 KNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE---NG----VPYWLVA 297

Query:   321 NSFNTNWGENGLFRI 335
             NS+N +WG+NG F+I
Sbjct:   298 NSWNVDWGDNGFFKI 312

GO:0050790 "regulation of catalytic activity" evidence=IEA

RGD|621509 Ctsb "cathepsin B" [Rattus norvegicus (taxid:10116)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 132/254 (51%), Positives = 178/254 (70%)

Query:    84 LPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASR 143
             LP  V  S+ +  LPE FDAR  W  CPTI +IRDQGSCGS WA GAVEAMSDR+CI + 
Sbjct:    68 LPERVGFSEDIN-LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTN 126

Query:   144 GKRHVRLSSDDLVSCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP- 201
             G+ +V +S++DL++CC   CG+GC GG+   AW +W   G+VSGG Y S  GC PY IP 
Sbjct:   127 GRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPP 186

Query:   202 CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFR 261
             CE ++NGS   C   E +TP+C + C+ GY  SY++D ++G  +YS+  +E+ IM EI++
Sbjct:   187 CEHHVNGSRPPCT-GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYK 245

Query:   262 HGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN 321
             +GPVEG+ T+++D + YK+G+YKH AG  +G HAIRI+GWG E    G    V YWLVAN
Sbjct:   246 NGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE---NG----VPYWLVAN 298

Query:   322 SFNTNWGENGLFRI 335
             S+N +WG+NG F+I
Sbjct:   299 SWNVDWGDNGFFKI 312

GO:0004175 "endopeptidase activity" evidence=IMP;IDA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA

GO:0005764 "lysosome" evidence=IEA;ISO;IDA

GO:0006508 "proteolysis" evidence=IEA;IEP;ISO;IMP;IDA;TAS

GO:0006914 "autophagy" evidence=IEP

GO:0006950 "response to stress" evidence=IEP

GO:0007283 "spermatogenesis" evidence=IEP

GO:0007519 "skeletal muscle tissue development" evidence=IEP

GO:0008233 "peptidase activity" evidence=ISO

GO:0008234 "cysteine-type peptidase activity" evidence=ISO

GO:0009611 "response to wounding" evidence=IEP

GO:0009612 "response to mechanical stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0014075 "response to amine stimulus" evidence=IEP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0030984 "kininogen binding" evidence=IPI

GO:0032403 "protein complex binding" evidence=IPI

GO:0034097 "response to cytokine stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042383 "sarcolemma" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043434 "response to peptide hormone stimulus" evidence=IEP

GO:0043621 "protein self-association" evidence=IDA

GO:0045471 "response to ethanol" evidence=IEP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;IDA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:0070670 "response to interleukin-4" evidence=IEP

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA;ISO

GO:0005901 "caveola" evidence=IDA

UNIPROTKB|P43233 CTSB "Cathepsin B" [Gallus gallus (taxid:9031)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 129/255 (50%), Positives = 174/255 (68%)

Query:    83 RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
             + P  V  ++ ++ LP+ FD R  WP CPTI EIRDQGSCGS WA GAVEA+SDR+C+ +
Sbjct:    67 KAPERVDFAEDMD-LPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHT 125

Query:   143 RGKRHVRLSSDDLVSCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
               K  V +S++DL+SCC  +CG GC GG+   AW+YW   G+VSGG Y S  GCR Y IP
Sbjct:   126 NAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVSGGLYDSHVGCRAYTIP 185

Query:   202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
              CE ++NGS   C      TP C R C+PGY  SY++D ++G  +Y +P +E+ IM EI+
Sbjct:   186 PCEHHVNGSRPPCTGEGGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSEKEIMAEIY 245

Query:   261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
             ++GPVEG+  +Y D ++YK+G+Y+HV+G  +G HAIRI+GWG E    GT     YWL A
Sbjct:   246 KNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGGHAIRILGWGVE---NGTP----YWLAA 298

Query:   321 NSFNTNWGENGLFRI 335
             NS+NT+WG  G F+I
Sbjct:   299 NSWNTDWGITGFFKI 313

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P00787	CATB_RAT	3, ., 4, ., 2, 2, ., 1	0.5157	0.4637	0.7168	yes	N/A
P43233	CATB_CHICK	3, ., 4, ., 2, 2, ., 1	0.5058	0.4675	0.7205	yes	N/A
A1E295	CATB_PIG	3, ., 4, ., 2, 2, ., 1	0.5560	0.4408	0.6895	yes	N/A
P07688	CATB_BOVIN	3, ., 4, ., 2, 2, ., 1	0.5352	0.4408	0.6895	yes	N/A
P10605	CATB_MOUSE	3, ., 4, ., 2, 2, ., 1	0.5019	0.4656	0.7197	yes	N/A
Q5R6D1	CATB_PONAB	3, ., 4, ., 2, 2, ., 1	0.5215	0.4656	0.7197	yes	N/A
P07858	CATB_HUMAN	3, ., 4, ., 2, 2, ., 1	0.5217	0.4618	0.7138	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22.1	0.824
3rd Layer	3.4.22	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	524
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	1e-107
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	5e-62
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	4e-56
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	4e-37
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	4e-32
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	4e-27
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	1e-26
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	7e-26
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	2e-23
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	8e-22
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	8e-21
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	2e-20
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	7e-16
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	2e-15
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	5e-15
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	7e-15
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	3e-14
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	4e-14
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	2e-13
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	2e-09
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	2e-09
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	3e-09
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	2e-08
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	1e-06
cd01650	220	cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long term	2e-06
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	1e-04

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score =  319 bits (821), Expect = e-107
 Identities = 121/238 (50%), Positives = 155/238 (65%), Gaps = 18/238 (7%)

Query: 98  PEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS 157
           PE FDAR  WP C +I EIRDQG+CGS WA  AVEA SDR+CI S GK +V LS+ DL+S
Sbjct: 1   PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60

Query: 158 CCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNE 217
           CC  CG+GC GG+   AWKY  TTG+V+G       GC+PY IP      G H       
Sbjct: 61  CCSGCGDGCNGGYPDAAWKYLTTTGVVTG-------GCQPYTIP----PCGHHPEGPPPC 109

Query: 218 PNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMIL 277
             TP C  KCQ G + +YE+D + G+ AYS+P++E  IM+EI  +GPV+ + T+Y D + 
Sbjct: 110 CGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLY 169

Query: 278 YKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           YK+G+Y+H +G  LG HA++IIGW       G  + V YWL ANS+ T+WGENG FRI
Sbjct: 170 YKSGVYQHTSGKQLGGHAVKIIGW-------GVENGVPYWLAANSWGTDWGENGYFRI 220

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score =  202 bits (517), Expect = 5e-62
 Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 13/168 (7%)

Query: 327 WGENGLFRIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGR 385
               G+   GC+PY IP C  +  G    C      TP C  KCQ G + +YE+D + G+
Sbjct: 81  LTTTGVVTGGCQPYTIPPCGHHPEGPPPCC-----GTPYCTPKCQDGCEKTYEEDKHKGK 135

Query: 386 IAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQ 445
            AYS+P++E  IM+EI  +GPV+ + T+Y D + YK+G+Y+H +G  LG HA++IIGW  
Sbjct: 136 SAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGW-- 193

Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAG 493
                G  + V YWL ANS+ T+WGENG FRI+RG NECGIE+++ AG
Sbjct: 194 -----GVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVAG 236

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  186 bits (475), Expect = 4e-56
 Identities = 79/241 (32%), Positives = 111/241 (46%), Gaps = 47/241 (19%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE FD R        +  ++DQG CGS WA  AV A+  R CI +   + V LS   LV
Sbjct: 1   LPESFDWREKGA----VTPVKDQGQCGSCWAFSAVGALEGRYCIKT--GKLVSLSEQQLV 54

Query: 157 SCCKDCGNGCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQD 215
            C     NGC GG    A++Y     GIV+   Y       PY             +C+ 
Sbjct: 55  DCDTGN-NGCNGGLPDNAFEYIKKNGGIVTESDY-------PYT--------AHDGTCKF 98

Query: 216 NEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD- 274
            + N               Y     +G + Y+   +EE +   + ++GPV  ++  Y D 
Sbjct: 99  KKSN-------------SKYAKIKGYGDVPYN---DEEALQAALAKNGPVSVAIDAYEDD 142

Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
             LYK+G+YKH       +HA+ I+G+       GT + V YW+V NS+ T+WGENG FR
Sbjct: 143 FQLYKSGVYKHTECSGELDHAVLIVGY-------GTENGVPYWIVKNSWGTDWGENGYFR 195

Query: 335 I 335
           I
Sbjct: 196 I 196

Length = 213

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score =  135 bits (343), Expect = 4e-37
 Identities = 63/222 (28%), Positives = 88/222 (39%), Gaps = 42/222 (18%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA 174
            ++DQGSCGS WA   V A+     I     + V LS   LV C     NGC GG    A
Sbjct: 14  PVKDQGSCGSCWAFSTVGALEGAYAIK--TGKLVSLSEQQLVDCSTSGNNGCNGGNPDNA 71

Query: 175 WKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVS 234
           ++Y    G+ S   Y       PY         G   +C+ N                  
Sbjct: 72  FEYVKNGGLASESDY-------PYT--------GKDGTCKYNSSKVG--------AKITG 108

Query: 235 YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGE- 293
           Y         +   P +EE +   +  +GPV  ++   +    YK GIY           
Sbjct: 109 Y---------SNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLN 159

Query: 294 HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           HA+ ++G+G       T + V YW+V NS+ T+WGE G  RI
Sbjct: 160 HAVLLVGYG-------TENGVDYWIVKNSWGTSWGEKGYIRI 194

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  122 bits (308), Expect = 4e-32
 Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 14/133 (10%)

Query: 363 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD-MILYK 421
             C  K              +G + Y+   +EE +   + ++GPV  ++  Y D   LYK
Sbjct: 94  GTCKFKKSNSKYAK---IKGYGDVPYN---DEEALQAALAKNGPVSVAIDAYEDDFQLYK 147

Query: 422 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ 481
           +G+YKH       +HA+ I+G+G       T + V YW+V NS+ T+WGENG FRI RG 
Sbjct: 148 SGVYKHTECSGELDHAVLIVGYG-------TENGVPYWIVKNSWGTDWGENGYFRIARGV 200

Query: 482 NECGIEADITAGL 494
           NECGI ++ +  +
Sbjct: 201 NECGIASEASYPI 213

Length = 213

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score =  109 bits (273), Expect = 4e-27
 Identities = 68/221 (30%), Positives = 94/221 (42%), Gaps = 40/221 (18%)

Query: 122 CGSGWALGAVEAMSDRVCIASRGKR-HVRLSSDDLVSCCKDCGNG--CQGGFHGKAWKYW 178
           CGS WA G+  A++DR+ IA +G    V LS   ++    DC  G  C GG  G  ++Y 
Sbjct: 28  CGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVI----DCAGGGSCHGGDPGGVYEYA 83

Query: 179 VTTGIVSGGTYASKQGCRPY---EIPCERYMNGSHSSCQDNEPNTPEC-IRKCQPGYDVS 234
              GI         + C PY   +  C  +      +C  N     EC   K    Y VS
Sbjct: 84  HKHGIPD-------ETCNPYQAKDGECNPF--NRCGTC--NPFG--ECFAIKNYTLYFVS 130

Query: 235 YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEH 294
                      Y   +  + +M EI+  GP+   +     +  Y  G+YK     PL  H
Sbjct: 131 ----------DYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLINH 180

Query: 295 AIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            I + GWG +  G      V+YW+V NS+   WGE G FRI
Sbjct: 181 IISVAGWGVDENG------VEYWIVRNSWGEPWGERGWFRI 215

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score =  107 bits (270), Expect = 1e-26
 Identities = 72/257 (28%), Positives = 113/257 (43%), Gaps = 51/257 (19%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHV----RLSS 152
           LP+ FD          +  +R+QG CGS +A  +V A+  R+ IAS     +     LS 
Sbjct: 1   LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSP 60

Query: 153 DDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSS 212
             ++SC +    GC GGF     K+    GIV+       +   PY              
Sbjct: 61  QHVLSCSQ-YSQGCDGGFPFLVGKFAEDFGIVT-------EDYFPYT-------ADDDRP 105

Query: 213 CQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-NEETIMREIFRHGPVEGSMTI 271
           C+    +  EC R     Y  S     ++  +       NE+ +  EI+R+GP+  +  +
Sbjct: 106 CK---ASPSECRR-----YYFS-----DYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEV 152

Query: 272 YADMILYKTGIYKH-----VAGGP--------LGEHAIRIIGWGQEPLGEGTSSVVKYWL 318
           Y+D   YK G+Y H     V+ G         L  HA+ ++GWG++ +        KYW+
Sbjct: 153 YSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEI-----KGEKYWI 207

Query: 319 VANSFNTNWGENGLFRI 335
           V NS+ ++WGE G F+I
Sbjct: 208 VKNSWGSSWGEKGYFKI 224

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score =  103 bits (259), Expect = 7e-26
 Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 25/134 (18%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE FD R       T   ++DQG CGS WA  A  A+  R CI +   + V LS   LV
Sbjct: 1   LPESFDWRKKG--AVTP--VKDQGQCGSCWAFSATGALEGRYCIKT--GKLVSLSEQQLV 54

Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGS------- 209
            C      GC GG    A++Y    G +        + C PY       ++ S       
Sbjct: 55  DCSGGGNCGCNGGLPDNAFEYIKKNGGLET------ESCYPYTGSV--AIDASDFQFYKS 106

Query: 210 ----HSSCQDNEPN 219
               H  C     +
Sbjct: 107 GIYDHPGCGSGTLD 120

Length = 175

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score = 99.0 bits (247), Expect = 2e-23
 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 18/109 (16%)

Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKH-----VAGGP--------LGEHAIR 439
           NE+ +  EI+R+GP+  +  +Y+D   YK G+Y H     V+ G         L  HA+ 
Sbjct: 132 NEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVL 191

Query: 440 IIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEA 488
           ++GWG++ +        KYW+V NS+ ++WGE G F+I RG NECGIE+
Sbjct: 192 LVGWGEDEI-----KGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIES 235

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 92.3 bits (230), Expect = 8e-22
 Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 8/91 (8%)

Query: 406 PVEGSMTI-YADMILYKTGIYKHVA-GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN 463
           P  GS+ I  +D   YK+GIY H   G    +HA+ I+G+G E           YW+V N
Sbjct: 89  PYTGSVAIDASDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEVENG-----KDYWIVKN 143

Query: 464 SFNTNWGENGLFRIVRGQ-NECGIEADITAG 493
           S+ T+WGENG FRI RG+ NECGIEA + + 
Sbjct: 144 SWGTDWGENGYFRIARGKNNECGIEASVASY 174

Length = 175

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score = 90.4 bits (225), Expect = 8e-21
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGE-HAIRIIGWGQ 445
           +   P +EE +   +  +GPV  ++   +    YK GIY           HA+ ++G+G 
Sbjct: 110 SNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYG- 168

Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIE 487
                 T + V YW+V NS+ T+WGE G  RI RG N CGI 
Sbjct: 169 ------TENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIA 204

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 89.9 bits (223), Expect = 2e-20
 Identities = 61/246 (24%), Positives = 81/246 (32%), Gaps = 49/246 (19%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSC----CKDCGNGCQGGF 170
            +++QGS GS WA  +  A+     I      +V LS   L  C    C      C GG 
Sbjct: 11  PVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGG 70

Query: 171 HGKAW-KYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQP 229
              A  K     GI         +   PY                D E    E       
Sbjct: 71  PLSALLKLVALKGIPP-------EEDYPYGAE------------SDGEEPKSEAALNAAK 111

Query: 230 GYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYK----- 284
                Y   L           N E I   + + GPV     +Y+     K GI       
Sbjct: 112 VKLKDYRRVLKN---------NIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVY 162

Query: 285 -HVAGGPLGEHAIRIIGWG-QEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEI 342
                G LG HA+ I+G+      G+G       ++V NS+ T+WG+NG  RI    YE 
Sbjct: 163 LLYEDGDLGGHAVVIVGYDDNYVEGKG------AFIVKNSWGTDWGDNGYGRI---SYED 213

Query: 343 PCERYM 348
             E   
Sbjct: 214 VYEMTF 219

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 75.3 bits (186), Expect = 7e-16
 Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 264 PVEGSMTI-YADMILYKTGIYKHVA-GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN 321
           P  GS+ I  +D   YK+GIY H   G    +HA+ I+G+G E           YW+V N
Sbjct: 89  PYTGSVAIDASDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEVENG-----KDYWIVKN 143

Query: 322 SFNTNWGENGLFRI 335
           S+ T+WGENG FRI
Sbjct: 144 SWGTDWGENGYFRI 157

Length = 175

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
            Y   +  + +M EI+  GP+   +     +  Y  G+YK     PL  H I + GWG +
Sbjct: 131 DYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVD 190

Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNEC-----GIEADITAGLPK 496
             G      V+YW+V NS+   WGE G FRIV    +       IE D     P 
Sbjct: 191 ENG------VEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWADPI 239

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 77.7 bits (191), Expect = 5e-15
 Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 31/140 (22%)

Query: 394 EETIMREIFRHGPVEGSMTIYADMILYKTGIY----------------KH-----VAGGP 432
           E+ +M EI+R+GP+  S     D   Y  G+Y                KH     + G  
Sbjct: 557 EKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWE 616

Query: 433 LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEA---- 488
              HAI ++GWG+E   E    + KYW+  NS+  NWG+ G F+I+RG+N  GIE+    
Sbjct: 617 KVNHAIVLVGWGEE---EINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLF 673

Query: 489 ---DITAGLPKIGLEIDSNE 505
              D + G  KI LE   NE
Sbjct: 674 IEPDFSRGAGKILLEKLENE 693

Length = 693

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 76.7 bits (189), Expect = 7e-15
 Identities = 72/299 (24%), Positives = 118/299 (39%), Gaps = 58/299 (19%)

Query: 52  YGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLS--DPLEELPEG---FD-ARI 105
           Y    N    L+  E + +           N       ++  D +++       FD A+ 
Sbjct: 211 YKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKY 270

Query: 106 NWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNG 165
           +W     +  ++DQ +CGS WA   V  +  +  I  R    V LS  +LV  C    NG
Sbjct: 271 DWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAI--RKNELVSLSEQELVD-CSFKNNG 327

Query: 166 CQGGFHGKAWKYWVTTG-IVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECI 224
           C GG    A++  +  G + S   Y       PY                 + P     I
Sbjct: 328 CYGGLIPNAFEDMIELGGLCSEDDY-------PY---------------VSDTPELCN-I 364

Query: 225 RKCQPGYDV-SYEDDLNFGRIAYSLPANEETIMREIFRH-GPVEGSMTIYADMILYKTGI 282
            +C+  Y + SY           S+P ++    +E  R  GP+  S+ +  D   YK GI
Sbjct: 365 DRCKEKYKIKSY----------VSIPEDK---FKEAIRFLGPISVSIAVSDDFAFYKGGI 411

Query: 283 YKHVAGGPLGE---HAIRIIGWGQEPLGEGTSSVVK---YWLVANSFNTNWGENGLFRI 335
           +     G  GE   HA+ ++G+G E +    +  ++   Y+++ NS+  +WGE G  RI
Sbjct: 412 FD----GECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRI 466

Length = 489

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 73.6 bits (180), Expect = 3e-14
 Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 51/258 (19%)

Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
             ++W     +  +++QG+CGS WA  AV  +  +  +A  G + VRLS   LVSC    
Sbjct: 128 DAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVA--GHKLVRLSEQQLVSC-DHV 184

Query: 163 GNGCQGGFHGKAWKYWV---TTGIV-SGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEP 218
            NGC GG   +A++ WV     G V +  +Y    G            NG    C ++  
Sbjct: 185 DNGCGGGLMLQAFE-WVLRNMNGTVFTEKSYPYVSG------------NGDVPECSNSS- 230

Query: 219 NTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILY 278
                  +  PG  +        G +  S+ ++E  +   + ++GP+  ++   + M  Y
Sbjct: 231 -------ELAPGARID-------GYV--SMESSERVMAAWLAKNGPISIAVDASSFMS-Y 273

Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI--- 335
            +G+     G  L  H + ++G+     GE     V YW++ NS+  +WGE G  R+   
Sbjct: 274 HSGVLTSCIGEQL-NHGVLLVGYNMT--GE-----VPYWVIKNSWGEDWGEKGYVRVTMG 325

Query: 336 --GCRPYEIPCERYMNGS 351
              C     P   +++ S
Sbjct: 326 VNACLLTGYPVSVHVSQS 343

Length = 348

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 74.6 bits (183), Expect = 4e-14
 Identities = 71/287 (24%), Positives = 112/287 (39%), Gaps = 51/287 (17%)

Query: 94  LEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSS- 152
           ++ELP+ F     +       ++ +Q  CGS +    + A   R+ IA       +  + 
Sbjct: 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNN 437

Query: 153 -DDLVS-----CCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTY---ASKQGCRPYEIPCE 203
            DDL+S      C     GC GGF     K     GI     +   A++Q C PY++  +
Sbjct: 438 FDDLLSIQTVLSCSFYDQGCNGGFPYLVSKMAKLQGIPLDKVFPYTATEQTC-PYQV--D 494

Query: 204 RYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYE----DDLN------FGRIAYSLPAN-- 251
           +  N  + S    + N      + Q      +E     +        +  I      N  
Sbjct: 495 QSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAKDYNYIGGCYGCNQC 554

Query: 252 --EETIMREIFRHGPVEGSMTIYADMILYKTGIY----------------KH-----VAG 288
             E+ +M EI+R+GP+  S     D   Y  G+Y                KH     + G
Sbjct: 555 NGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614

Query: 289 GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                HAI ++GWG+E   E    + KYW+  NS+  NWG+ G F+I
Sbjct: 615 WEKVNHAIVLVGWGEE---EINGKLYKYWIGRNSWGKNWGKEGYFKI 658

Length = 693

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 75/318 (23%), Positives = 123/318 (38%), Gaps = 78/318 (24%)

Query: 30  FCDLS-KAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPD--SKLPQNRLPL 86
           F DL+ + F +     L P +          S    ++ + R   +P     L +     
Sbjct: 173 FSDLTEEEFRK-----LFPVIKVPPKSN---STSHNNDFKARHVSNPTYLKNL-KKAKNT 223

Query: 87  LVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGS-CGSGWA---LGAVEAMSDRVCIAS 142
              + DP +   EG D    W     + +++DQG  CGS WA   +G+VE++        
Sbjct: 224 DEDVKDPSKITGEGLD----WRRADAVTKVKDQGLNCGSCWAFSSVGSVESL-----YKI 274

Query: 143 RGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIV--SGGTYASKQG-CRPYE 199
              + V LS  +LV+C      GC GG+   A +Y    G+   S   Y +K G C    
Sbjct: 275 YRDKSVDLSEQELVNCDTKS-QGCSGGYPDTALEYVKNKGLSSSSDVPYLAKDGKCVVSS 333

Query: 200 IPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREI 259
              + Y++                + K   G DV                 N+  ++   
Sbjct: 334 TK-KVYIDSYL-------------VAK---GKDV----------------LNKSLVI--- 357

Query: 260 FRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVK--YW 317
               P    + +  +++ YK+G+Y    G  L  HA+ ++G       EG     K  YW
Sbjct: 358 ---SPTVVYIAVSRELLKYKSGVYNGECGKSL-NHAVLLVG-------EGYDEKTKKRYW 406

Query: 318 LVANSFNTNWGENGLFRI 335
           ++ NS+ T+WGENG  R+
Sbjct: 407 IIKNSWGTDWGENGYMRL 424

Length = 448

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYK------HVAGGPLGEHAIRIIGWG-Q 445
           N E I   + + GPV     +Y+     K GI            G LG HA+ I+G+   
Sbjct: 124 NIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDN 183

Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 477
              G+G       ++V NS+ T+WG+NG  RI
Sbjct: 184 YVEGKG------AFIVKNSWGTDWGDNGYGRI 209

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 62/274 (22%), Positives = 100/274 (36%), Gaps = 59/274 (21%)

Query: 89  QLSDPLEELPEGFDAR-INW-PYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKR 146
           QL DP    P  +    +    + P          C S +   A+ AM  RV +AS    
Sbjct: 200 QLGDPP---PAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTD 256

Query: 147 HV----RLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPC 202
            +     LS+  ++ C +  G GC GGF  +  K+  T GI++  +Y          IP 
Sbjct: 257 PLGQQTFLSARHVLDCSQ-YGQGCAGGFPEEVGKFAETFGILTTDSYY---------IP- 305

Query: 203 ERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRH 262
             Y +G                +  +P     + +    G    ++   +E I+ EI+RH
Sbjct: 306 --YDSGD---------GVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDE-IIWEIYRH 353

Query: 263 GPVEGSMTIYADMILYKTGIYKHVAGGPLGE-------------------HAIRIIGWGQ 303
           GPV  S+   +D         + V    L +                   H + IIGWG 
Sbjct: 354 GPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGT 413

Query: 304 EPLGEGTSSVVKYWLVANSFNT--NWGENGLFRI 335
           +  G        YWLV + + +  +W + G  +I
Sbjct: 414 DENG------GDYWLVLDPWGSRRSWCDGGTRKI 441

Length = 548

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 13/76 (17%)

Query: 416 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVK--YWLVANSFNTNWGENG 473
           +++ YK+G+Y    G  L  HA+ ++G       EG     K  YW++ NS+ T+WGENG
Sbjct: 369 ELLKYKSGVYNGECGKSL-NHAVLLVG-------EGYDEKTKKRYWIIKNSWGTDWGENG 420

Query: 474 LFRIVR---GQNECGI 486
             R+ R   G ++CGI
Sbjct: 421 YMRLERTNEGTDKCGI 436

Length = 448

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 27/118 (22%)

Query: 395 ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGE------------------- 435
           + I+ EI+RHGPV  S+   +D         + V    L +                   
Sbjct: 344 DEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVN 403

Query: 436 HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT--NWGENGLFRIVRGQNECGIEADIT 491
           H + IIGWG +  G        YWLV + + +  +W + G  +I RG N   IE+++ 
Sbjct: 404 HTVLIIGWGTDENG------GDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVV 455

Length = 548

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 389 SLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPL 448
           S+ ++E  +   + ++GP+  ++   + M  Y +G+     G  L  H + ++G+     
Sbjct: 243 SMESSERVMAAWLAKNGPISIAVDASSFMS-YHSGVLTSCIGEQL-NHGVLLVGYNMT-- 298

Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNEC 484
           GE     V YW++ NS+  +WGE G  R+  G N C
Sbjct: 299 GE-----VPYWVIKNSWGEDWGEKGYVRVTMGVNAC 329

Length = 348

>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT)

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 2   GKSTADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKL 49
           G+ST DA+    + ++ ++  +     VF D  KAFD VDH  LL  L
Sbjct: 58  GRSTTDAILLLREVIEKAKEKKKSLVLVFLDFEKAFDSVDHEFLLKAL 105

This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities. Length = 220

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 27/127 (21%)

Query: 361 NTPE-C-IRKCQPGYDV-SYEDDLNFGRIAYSLPANEETIMREIFRH-GPVEGSMTIYAD 416
           +TPE C I +C+  Y + SY           S+P ++    +E  R  GP+  S+ +  D
Sbjct: 357 DTPELCNIDRCKEKYKIKSY----------VSIPEDK---FKEAIRFLGPISVSIAVSDD 403

Query: 417 MILYKTGIYKHVAGGPLGE---HAIRIIGWGQEPLGEGTSSVVK---YWLVANSFNTNWG 470
              YK GI+     G  GE   HA+ ++G+G E +    +  ++   Y+++ NS+  +WG
Sbjct: 404 FAFYKGGIFD----GECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWG 459

Query: 471 ENGLFRI 477
           E G  RI
Sbjct: 460 EKGFIRI 466

Length = 489

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	524
KOG1542|consensus	372		100.0
PTZ00203	348	cathepsin L protease; Provisional	100.0
PTZ00021	489	falcipain-2; Provisional	100.0
PTZ00200	448	cysteine proteinase; Provisional	100.0
KOG1543|consensus	325		100.0
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	100.0
PTZ00049	693	cathepsin C-like protein; Provisional	100.0
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	100.0
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	100.0
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	100.0
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	100.0
KOG1544|consensus	470		100.0
PF00112	219	Peptidase_C1: Papain family cysteine protease This	100.0
smart00645	174	Pept_C1 Papain family cysteine protease.	100.0
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	100.0
PTZ00462	1004	Serine-repeat antigen protein; Provisional	100.0
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	99.95
KOG1543|consensus	325		99.95
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	99.94
KOG1542|consensus	372		99.94
PTZ00203	348	cathepsin L protease; Provisional	99.93
COG4870	372	Cysteine protease [Posttranslational modification,	99.92
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	99.92
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	99.92
PTZ00021	489	falcipain-2; Provisional	99.9
PTZ00200	448	cysteine proteinase; Provisional	99.9
PF00112	219	Peptidase_C1: Papain family cysteine protease This	99.89
PTZ00462	1004	Serine-repeat antigen protein; Provisional	99.89
PTZ00049	693	cathepsin C-like protein; Provisional	99.85
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	99.84
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.84
KOG1544|consensus	470		99.8
smart00645	174	Pept_C1 Papain family cysteine protease.	99.79
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	99.76
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.46
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	99.45
COG4870	372	Cysteine protease [Posttranslational modification,	99.35
PF08246	58	Inhibitor_I29: Cathepsin propeptide inhibitor doma	99.28
smart00848	57	Inhibitor_I29 Cathepsin propeptide inhibitor domai	98.98
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	98.39
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	98.3
PF08127	41	Propeptide_C1: Peptidase family C1 propeptide; Int	97.19
PF05543	175	Peptidase_C47: Staphopain peptidase C47; InterPro:	96.22
KOG4128|consensus	457		95.35
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	95.28
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	94.62
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	82.49

>KOG1542|consensus

Probab=100.00  E-value=5.7e-70  Score=527.35  Aligned_cols=294  Identities=26%  Similarity=0.413  Sum_probs=244.5

Q ss_pred             cHHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHHHHHHhCCCCC--CCCCC
Q psy1664           4 STADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPD--SKLPQ   81 (524)
Q Consensus         4 st~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~~~~~~~~--~~~~~   81 (524)
                      ...+.|..|+.+|.|+|.+.+|...|+.+|++|+..++++++... .+-..|+|+|||||.|||+++++..+.  .+.+.
T Consensus        66 ~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~-gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~~  144 (372)
T KOG1542|consen   66 GLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDP-GSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLPG  144 (372)
T ss_pred             chHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCc-cccccCccchhhcCHHHHHHHhhccccccccCcc
Confidence            347899999999999999999999999999999999999987652 477889999999999999997654332  21111


Q ss_pred             CCCCcccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCC
Q psy1664          82 NRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD  161 (524)
Q Consensus        82 ~~~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~  161 (524)
                      .   .......+...||++||||++    |+||||||||+||||||||+++++|.+++|+++  ++++||||+||||+ .
T Consensus       145 ~---~~~~~~~~~~~lP~~fDWR~k----gaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g--~LvsLSEQeLvDCD-~  214 (372)
T KOG1542|consen  145 D---AAEAPIEPGESLPESFDWRDK----GAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATG--KLVSLSEQELVDCD-S  214 (372)
T ss_pred             c---cccCcCCCCCCCCcccchhcc----CCccccccCCcCcchhhhhhhhhhhhHHHhhcC--cccccchhhhhccc-C
Confidence            1   111112445689999999999    999999999999999999999999999999986  68999999999995 5


Q ss_pred             CCCCCCCCChHHHHHHHHH-hCCccCCccCCCCCccccccCcccccCCCCC-CCCCCCCCCccccccccCCCcccccccc
Q psy1664         162 CGNGCQGGFHGKAWKYWVT-TGIVSGGTYASKQGCRPYEIPCERYMNGSHS-SCQDNEPNTPECIRKCQPGYDVSYEDDL  239 (524)
Q Consensus       162 ~~~gC~GG~~~~a~~~~~~-~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (524)
                      .++||+||.+..||+|+++ .|+..|.+|       ||++.        .+ .|...+.....                 
T Consensus       215 ~d~gC~GGl~~nA~~~~~~~gGL~~E~dY-------PY~g~--------~~~~C~~~~~~~~v-----------------  262 (372)
T KOG1542|consen  215 CDNGCNGGLMDNAFKYIKKAGGLEKEKDY-------PYTGK--------KGNQCHFDKSKIVV-----------------  262 (372)
T ss_pred             cCCcCCCCChhHHHHHHHHhCCccccccC-------Ccccc--------CCCccccchhhceE-----------------
Confidence            6889999999999999655 489999999       99987        44 78765533221                 


Q ss_pred             ccceeeeecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEc--CCCCCC-CCcEEEEEEeccCCCCCCCccceeE
Q psy1664         240 NFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKH--VAGGPL-GEHAIRIIGWGQEPLGEGTSSVVKY  316 (524)
Q Consensus       240 ~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~--~~~~~~-~~HaV~iVGyg~~~~~~g~~~g~~Y  316 (524)
                       +......++.|+++|.+.|+++|||+|+|++ ..+|+|++||..+  ..|++. ++|+|+|||||...      -.++|
T Consensus       263 -~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa-~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g------~~~PY  334 (372)
T KOG1542|consen  263 -SIKDFSMLSNNEDQIAAWLVTFGPLSVGINA-KPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSG------YEKPY  334 (372)
T ss_pred             -EEeccEecCCCHHHHHHHHHhcCCeEEEEch-HHHHHhcccccCCCcccCCccccCceEEEEeecCCC------CCCce
Confidence             1111245677999999999999999999995 6799999999987  457664 99999999999862      25899


Q ss_pred             EEEeCCCCCcccccCccccccccCccCCcCcCCc
Q psy1664         317 WLVANSFNTNWGENGLFRIGCRPYEIPCERYMNG  350 (524)
Q Consensus       317 WivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~  350 (524)
                      ||||||||++|||+||+||.|+.+  .||+....
T Consensus       335 WIVKNSWG~~WGE~GY~~l~RG~N--~CGi~~mv  366 (372)
T KOG1542|consen  335 WIVKNSWGTSWGEKGYYKLCRGSN--ACGIADMV  366 (372)
T ss_pred             EEEECCccccccccceEEEecccc--ccccccch
Confidence            999999999999999999999977  68886544

>PTZ00203 cathepsin L protease; Provisional

Probab=100.00  E-value=4.6e-66  Score=525.81  Aligned_cols=298  Identities=21%  Similarity=0.424  Sum_probs=231.8

Q ss_pred             CCCcHHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHHHHHHh-CCCCCCCC
Q psy1664           1 MGKSTADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRM-GVHPDSKL   79 (524)
Q Consensus         1 ~~~st~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~~~-~~~~~~~~   79 (524)
                      |+++..+.|++|+++|+|+|.+.+|...|+.+|.+|+++|++||++.  .+|++++|+|+|||.|||++++ +.......
T Consensus        30 ~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~--~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~  107 (348)
T PTZ00203         30 VGTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARN--PHARFGITKFFDLSEAEFAARYLNGAAYFAA  107 (348)
T ss_pred             cccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccC--CCeEEeccccccCCHHHHHHHhcCCCccccc
Confidence            46678899999999999999998888899999999999999999875  6899999999999999999754 22111100


Q ss_pred             CCCCCCc-ccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhh
Q psy1664          80 PQNRLPL-LVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSC  158 (524)
Q Consensus        80 ~~~~~~~-~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC  158 (524)
                      +...... .........+||++||||++    |+|+||||||.||||||||++++||++++|+++  ..+.||+|||+||
T Consensus       108 ~~~~~~~~~~~~~~~~~~lP~~~DWR~~----g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~--~~~~LSeQqLvdC  181 (348)
T PTZ00203        108 AKQHAGQHYRKARADLSAVPDAVDWREK----GAVTPVKNQGACGSCWAFSAVGNIESQWAVAGH--KLVRLSEQQLVSC  181 (348)
T ss_pred             ccccccccccccccccccCCCCCcCCcC----CCCCCccccCCCccHHHHhhHHHHHHHHHHhcC--CCccCCHHHHHhc
Confidence            0000000 00011122369999999998    899999999999999999999999999999975  4689999999999


Q ss_pred             cCCCCCCCCCCChHHHHHHHHHh---CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCcccc
Q psy1664         159 CKDCGNGCQGGFHGKAWKYWVTT---GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSY  235 (524)
Q Consensus       159 ~~~~~~gC~GG~~~~a~~~~~~~---Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~  235 (524)
                      +. .+.||+||++..||+|++++   |+++|++|       ||...     .+....|.......        ...    
T Consensus       182 ~~-~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~Y-------PY~~~-----~~~~~~C~~~~~~~--------~~~----  236 (348)
T PTZ00203        182 DH-VDNGCGGGLMLQAFEWVLRNMNGTVFTEKSY-------PYVSG-----NGDVPECSNSSELA--------PGA----  236 (348)
T ss_pred             cC-CCCCCCCCCHHHHHHHHHHhcCCCCCccccC-------CCccC-----CCCCCcCCCCcccc--------cce----
Confidence            75 36799999999999999865   47888888       99865     11112454211000        000    


Q ss_pred             ccccccceeeeecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCcccee
Q psy1664         236 EDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVK  315 (524)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~  315 (524)
                       ....    ...++.++++|+.+|+++|||+|+|++. +|++|++|||+. +....++|||+|||||.+       ++++
T Consensus       237 -~i~~----~~~i~~~e~~~~~~l~~~GPv~v~i~a~-~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~-------~g~~  302 (348)
T PTZ00203        237 -RIDG----YVSMESSERVMAAWLAKNGPISIAVDAS-SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMT-------GEVP  302 (348)
T ss_pred             -Eecc----eeecCcCHHHHHHHHHhCCCEEEEEEhh-hhcCccCceeec-cCCCCCCeEEEEEEEecC-------CCce
Confidence             1111    1334557888999999999999999985 899999999985 333457999999999976       4689


Q ss_pred             EEEEeCCCCCcccccCccccccccCccCCcCc
Q psy1664         316 YWLVANSFNTNWGENGLFRIGCRPYEIPCERY  347 (524)
Q Consensus       316 YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~  347 (524)
                      |||||||||++|||+|||||+++..  .|++.
T Consensus       303 YWiikNSWG~~WGe~GY~ri~rg~n--~Cgi~  332 (348)
T PTZ00203        303 YWVIKNSWGEDWGEKGYVRVTMGVN--ACLLT  332 (348)
T ss_pred             EEEEEcCCCCCcCcCceEEEEcCCC--ccccc
Confidence            9999999999999999999998754  57764

>PTZ00021 falcipain-2; Provisional

Probab=100.00  E-value=6.9e-64  Score=523.54  Aligned_cols=307  Identities=21%  Similarity=0.423  Sum_probs=235.9

Q ss_pred             cHHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHHHHHHhCCCCCCCCCC--
Q psy1664           4 STADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQ--   81 (524)
Q Consensus         4 st~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~~~~~~~~~~~~~--   81 (524)
                      -++.+|++|+++|+|+|.+.+|...|+.+|.+|+++|++||++.+ .+|++++|+|+|||.|||++++...+......  
T Consensus       164 e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~-~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~  242 (489)
T PTZ00021        164 ENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKEN-VLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNG  242 (489)
T ss_pred             HHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCC-CCEEEeccccccCCHHHHHHHhcccccccccccc
Confidence            457889999999999999999999999999999999999998754 79999999999999999998543221100000  


Q ss_pred             ---CCCCcc----ccc-CCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHH
Q psy1664          82 ---NRLPLL----VQL-SDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSD  153 (524)
Q Consensus        82 ---~~~~~~----~~~-~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q  153 (524)
                         ......    ... +.....+|++||||+.    |.|+||||||.||||||||++++||++++|+++  ..+.||+|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~----g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g--~~v~LSeQ  316 (489)
T PTZ00021        243 KKSPRVINYDDVIKKYKPKDATFDHAKYDWRLH----NGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKN--ELVSLSEQ  316 (489)
T ss_pred             ccccccccccccccccccccccCCccccccccC----CCCCCcccccccccHHHHHHHHHHHHHHHHHcC--CCcccCHH
Confidence               000000    000 0011125999999998    899999999999999999999999999999976  46899999


Q ss_pred             HHHhhcCCCCCCCCCCChHHHHHHHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCc
Q psy1664         154 DLVSCCKDCGNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYD  232 (524)
Q Consensus       154 ~lvdC~~~~~~gC~GG~~~~a~~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~  232 (524)
                      ||+||+. .+.||+||++..||+|+.++ |+++|++|       ||.+.       ..+.|....         |...+.
T Consensus       317 qLVDCs~-~n~GC~GG~~~~Af~yi~~~gGl~tE~~Y-------PY~~~-------~~~~C~~~~---------~~~~~~  372 (489)
T PTZ00021        317 ELVDCSF-KNNGCYGGLIPNAFEDMIELGGLCSEDDY-------PYVSD-------TPELCNIDR---------CKEKYK  372 (489)
T ss_pred             HHhhhcc-CCCCCCCcchHhhhhhhhhccccCccccc-------CccCC-------CCCcccccc---------ccccce
Confidence            9999975 36799999999999999876 89998888       99864       125565321         111111


Q ss_pred             cccccccccceeeeecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCC---C
Q psy1664         233 VSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGE---G  309 (524)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~---g  309 (524)
                      +     ..|    ..++  +++|+++|+.+|||+|+|+++.+|++|++|||+.. |...++|||+|||||.+...+   +
T Consensus       373 i-----~~y----~~i~--~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~~-C~~~~nHAVlIVGYG~e~~~~~~~~  440 (489)
T PTZ00021        373 I-----KSY----VSIP--EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDGE-CGEEPNHAVILVGYGMEEIYNSDTK  440 (489)
T ss_pred             e-----eeE----EEec--HHHHHHHHHhcCCeEEEEEeecccccCCCCcCCCC-CCCccceEEEEEEecCcCCcccccc
Confidence            1     111    2333  57899999999999999999889999999999874 655689999999999763100   0


Q ss_pred             CccceeEEEEeCCCCCcccccCccccccccC--ccCCcCcCCcCCC
Q psy1664         310 TSSVVKYWLVANSFNTNWGENGLFRIGCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       310 ~~~g~~YWivkNSWG~~WGe~Gy~ri~~~~~--~~~c~~~~~~~~~  353 (524)
                      ...+.+|||||||||++|||+|||||+++..  ...||+.+.+.+|
T Consensus       441 ~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP  486 (489)
T PTZ00021        441 KMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVP  486 (489)
T ss_pred             cCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeE
Confidence            0123579999999999999999999998753  2479998766554

>PTZ00200 cysteine proteinase; Provisional

Probab=100.00  E-value=7.3e-63  Score=514.71  Aligned_cols=298  Identities=24%  Similarity=0.418  Sum_probs=230.3

Q ss_pred             cHHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHHHHHHhC-CCCCCCC---
Q psy1664           4 STADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMG-VHPDSKL---   79 (524)
Q Consensus         4 st~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~~~~-~~~~~~~---   79 (524)
                      .+...|++|+++|+|+|.+.+|...|+.+|.+|++.|++||..   .+|++|+|+|+|||.|||.+++. ...+...   
T Consensus       121 e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~---~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~  197 (448)
T PTZ00200        121 EVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGD---EPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNST  197 (448)
T ss_pred             HHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCc---CCeEEeccccccCCHHHHHHHhccCCCccccccc
Confidence            3567899999999999999999999999999999999999963   58999999999999999998653 2211100   


Q ss_pred             -CCCC-------CCcccc---c-----C---CCCCCCCCccccccCCCCCCCCccCCCCC-CCccHHHHHHHHHHHHHHH
Q psy1664          80 -PQNR-------LPLLVQ---L-----S---DPLEELPEGFDARINWPYCPTIQEIRDQG-SCGSGWALGAVEAMSDRVC  139 (524)
Q Consensus        80 -~~~~-------~~~~~~---~-----~---~~~~~lP~s~DwR~~~~~~g~vtpvkdQg-~CGsCwAfA~~~~le~~~~  139 (524)
                       +...       .+....   .     .   .....+|++||||+.    +.|+|||||| .||||||||++++||++++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~----g~vtpVkdQG~~CGSCWAFat~~aiEs~~~  273 (448)
T PTZ00200        198 SHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRA----DAVTKVKDQGLNCGSCWAFSSVGSVESLYK  273 (448)
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCccCCCC----CCCCCcccCCCccchHHHHhHHHHHHHHHH
Confidence             0000       000000   0     0   001236999999998    8899999999 9999999999999999999


Q ss_pred             HHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCC
Q psy1664         140 IASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN  219 (524)
Q Consensus       140 i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~  219 (524)
                      |+++  ..+.||+|||+||+. .++||+||++..||+|++++|+++|++|       ||.+.        .+.|......
T Consensus       274 i~~~--~~~~LSeQqLvDC~~-~~~GC~GG~~~~A~~yi~~~Gi~~e~~Y-------PY~~~--------~~~C~~~~~~  335 (448)
T PTZ00200        274 IYRD--KSVDLSEQELVNCDT-KSQGCSGGYPDTALEYVKNKGLSSSSDV-------PYLAK--------DGKCVVSSTK  335 (448)
T ss_pred             HhcC--CCeecCHHHHhhccC-ccCCCCCCcHHHHHHHHhhcCccccccC-------CCCCC--------CCCCcCCCCC
Confidence            9865  468999999999975 3679999999999999999999998888       99876        6677643211


Q ss_pred             CccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEE
Q psy1664         220 TPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRII  299 (524)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iV  299 (524)
                      .          .     ....     +.+..+. +++++++.+|||+|+|.++.+|+.|++|||+++ |...++|||+||
T Consensus       336 ~----------~-----~i~~-----y~~~~~~-~~l~~~l~~GPV~v~i~~~~~f~~Yk~GIy~~~-C~~~~nHaV~lV  393 (448)
T PTZ00200        336 K----------V-----YIDS-----YLVAKGK-DVLNKSLVISPTVVYIAVSRELLKYKSGVYNGE-CGKSLNHAVLLV  393 (448)
T ss_pred             e----------e-----Eecc-----eEecCHH-HHHHHHHhcCCEEEEeecccccccCCCCccccc-cCCCCcEEEEEE
Confidence            0          0     0111     1222333 455556678999999999989999999999875 555589999999


Q ss_pred             EeccCCCCCCCccceeEEEEeCCCCCcccccCccccccccC-ccCCcCcCCcCCC
Q psy1664         300 GWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPY-EIPCERYMNGSRS  353 (524)
Q Consensus       300 Gyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~~~~-~~~c~~~~~~~~~  353 (524)
                      |||.+.     ++|.+|||||||||++|||+|||||++... ...||+.+.+.+|
T Consensus       394 GyG~d~-----~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P  443 (448)
T PTZ00200        394 GEGYDE-----KTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVGLTP  443 (448)
T ss_pred             EecccC-----CCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccceee
Confidence            999752     246899999999999999999999998642 2368887665444

>KOG1543|consensus

Probab=100.00  E-value=4.3e-61  Score=486.13  Aligned_cols=285  Identities=31%  Similarity=0.550  Sum_probs=235.2

Q ss_pred             HHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHHHHHHhCCCCCCCCCCCCCCcccccCC
Q psy1664          13 LKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSD   92 (524)
Q Consensus        13 ~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (524)
                      +..|.+.|.+..+...|+.+|.+|++.|+.||.... .+|++++|+|+|++.+|+++..........    .........
T Consensus        30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~-~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~----~~~~~~~~~  104 (325)
T KOG1543|consen   30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYV-LSFLMGVNQFADLTTEEFKRKKTGKKPPEI----KRDKFTEKL  104 (325)
T ss_pred             hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhc-eeeeeccccccccchHHHHHhhccccCccc----ccccccccc
Confidence            445667777777788889999999999999999853 899999999999999999986544322210    111111223


Q ss_pred             CCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChH
Q psy1664          93 PLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG  172 (524)
Q Consensus        93 ~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~  172 (524)
                      ...+||++||||++|   .+++||||||.||||||||++++||++++|++++ .++.||+|+|+||+..+++||+||++.
T Consensus       105 ~~~~~p~s~DwR~~~---~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~-~l~sLSeq~lvdC~~~~~~GC~GG~~~  180 (325)
T KOG1543|consen  105 DGDDLPDSFDWRDKG---AVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGG-KLLSLSEQDLVDCCGECGDGCNGGEPK  180 (325)
T ss_pred             chhhCCCCccccccC---CcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCC-ccCccChhhhhhccCCCCCCcCCCCHH
Confidence            345899999999996   4567799999999999999999999999999976 689999999999987767899999999


Q ss_pred             HHHHHHHHhCCcc-CCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCC
Q psy1664         173 KAWKYWVTTGIVS-GGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPAN  251 (524)
Q Consensus       173 ~a~~~~~~~Gi~~-e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (524)
                      .|++|++++|+++ +.+|       ||...        .+.|......                  ...+....+.++.+
T Consensus       181 ~A~~yi~~~G~~t~~~~Y-------py~~~--------~~~C~~~~~~------------------~~~~~~~~~~~~~~  227 (325)
T KOG1543|consen  181 NAFKYIKKNGGVTECENY-------PYIGK--------DGTCKSNKKD------------------KTVTIKGFYNVPAN  227 (325)
T ss_pred             HHHHHHHHhCCCCCCcCC-------CCcCC--------CCCccCCCcc------------------ceeEeeeeeecCcC
Confidence            9999999999888 8888       99877        5577654420                  11122224567888


Q ss_pred             HHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCC-CCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCccccc
Q psy1664         252 EETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGP-LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGEN  330 (524)
Q Consensus       252 ~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~-~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~  330 (524)
                      +++|+.+|+.+|||+|+|+++.+|+.|++|||.+++|.. .++|||+|||||+ .      ++.+|||||||||++|||+
T Consensus       228 e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~-~------~~~~YWivkNSWG~~WGe~  300 (325)
T KOG1543|consen  228 EEAIAEAVAKNGPVSVAIDAYEDFSLYKGGVYAEEKGDDKEGDHAVLIVGYGT-G------DGVDYWIVKNSWGTDWGEK  300 (325)
T ss_pred             HHHHHHHHHhcCCeEEEEeehhhhhhccCceEeCCCCCCCCCCceEEEEEEcC-C------CCceeEEEEcCCCCCcccC
Confidence            999999999999999999999999999999999999887 4999999999998 3      5689999999999999999


Q ss_pred             CccccccccCccCCcCcC
Q psy1664         331 GLFRIGCRPYEIPCERYM  348 (524)
Q Consensus       331 Gy~ri~~~~~~~~c~~~~  348 (524)
                      |||||.++..  .|++..
T Consensus       301 Gy~ri~r~~~--~~~I~~  316 (325)
T KOG1543|consen  301 GYFRIARGVN--KCGIAS  316 (325)
T ss_pred             ceEEEecCCC--chhhhc
Confidence            9999999877  355443

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=100.00  E-value=1.8e-54  Score=422.38  Aligned_cols=235  Identities=55%  Similarity=1.119  Sum_probs=186.0

Q ss_pred             CCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHHH
Q psy1664          98 PEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKY  177 (524)
Q Consensus        98 P~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~  177 (524)
                      |++||||++|+++..|+||+|||.||||||||++++||++++|++++...+.||+|+|+||+...+.||+||++..||+|
T Consensus         1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~   80 (236)
T cd02620           1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY   80 (236)
T ss_pred             CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence            89999999988776678999999999999999999999999998764457899999999997654679999999999999


Q ss_pred             HHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHH
Q psy1664         178 WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMR  257 (524)
Q Consensus       178 ~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~  257 (524)
                      ++++|+++|++|       ||...        ...|...                                         
T Consensus        81 i~~~G~~~e~~y-------PY~~~--------~~~~~~~-----------------------------------------  104 (236)
T cd02620          81 LTTTGVVTGGCQ-------PYTIP--------PCGHHPE-----------------------------------------  104 (236)
T ss_pred             HHhcCCCcCCEe-------cCcCC--------CCccCCC-----------------------------------------
Confidence            999999998877       99754        1111000                                         


Q ss_pred             HHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcccccc
Q psy1664         258 EIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGC  337 (524)
Q Consensus       258 ~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~  337 (524)
                                                         .|                                           
T Consensus       105 -----------------------------------~~-------------------------------------------  106 (236)
T cd02620         105 -----------------------------------GP-------------------------------------------  106 (236)
T ss_pred             -----------------------------------CC-------------------------------------------
Confidence                                               00                                           


Q ss_pred             ccCccCCcCcCCcCCCCCCCCCCCCcccccccccCccccccCcceeeeEEEEcCCCHHHHHHHHHhCCCEEEEEeccccc
Q psy1664         338 RPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADM  417 (524)
Q Consensus       338 ~~~~~~c~~~~~~~~~~C~~~~~~~p~C~~~C~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f  417 (524)
                                     ..|..    ...|+..|.......|..+.+.....+.+..++++||.+|+++|||+++|.++++|
T Consensus       107 ---------------~~~~~----~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPv~v~i~~~~~f  167 (236)
T cd02620         107 ---------------PPCCG----TPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDF  167 (236)
T ss_pred             ---------------CCCCC----CCCCCCCCCcCCccccceeeeeecceeeeCCHHHHHHHHHHHCCCeEEEEEechhh
Confidence                           00100    11111223222111133334444556666667899999999999999999998899


Q ss_pred             ccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCCCcEEEEEeCCCccCcccccee
Q psy1664         418 ILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITA  492 (524)
Q Consensus       418 ~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~  492 (524)
                      +.|++|||...+....++|||+|||||+++       +++|||||||||++||++|||||+||.|.|||+++++.
T Consensus       168 ~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~-------g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~  235 (236)
T cd02620         168 LYYKSGVYQHTSGKQLGGHAVKIIGWGVEN-------GVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA  235 (236)
T ss_pred             hhcCCcEEeecCCCCcCCeEEEEEEEeccC-------CeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence            999999998765555679999999999886       88999999999999999999999999999999998764

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>PTZ00049 cathepsin C-like protein; Provisional

Probab=100.00  E-value=2.9e-51  Score=436.65  Aligned_cols=271  Identities=26%  Similarity=0.435  Sum_probs=191.4

Q ss_pred             CCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCC--------ccccCCHHHHHhhcCCCCCC
Q psy1664          94 LEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGK--------RHVRLSSDDLVSCCKDCGNG  165 (524)
Q Consensus        94 ~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~--------~~~~LS~q~lvdC~~~~~~g  165 (524)
                      ..+||++||||+.|+.++.++||+|||.||||||||++++||++++|+++..        ....||+|+||||+. .++|
T Consensus       378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~-~nqG  456 (693)
T PTZ00049        378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF-YDQG  456 (693)
T ss_pred             cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC-CCCC
Confidence            4589999999999999999999999999999999999999999999986421        123799999999975 4679


Q ss_pred             CCCCChHHHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceee
Q psy1664         166 CQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIA  245 (524)
Q Consensus       166 C~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (524)
                      |+||++..|++|++++||++|..|       ||++.        .+.|+.........                      
T Consensus       457 C~GG~~~~A~kya~~~GI~tEscY-------PY~a~--------~g~C~~~~~~~~~~----------------------  499 (693)
T PTZ00049        457 CNGGFPYLVSKMAKLQGIPLDKVF-------PYTAT--------EQTCPYQVDQSANS----------------------  499 (693)
T ss_pred             cCCCcHHHHHHHHHHCCCCcCCcc-------CCcCC--------CCCCCCCCCCcccc----------------------
Confidence            999999999999999999997777       99865        55675321100000                      


Q ss_pred             eecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCC
Q psy1664         246 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT  325 (524)
Q Consensus       246 ~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~  325 (524)
                                                                          +.|+..                      
T Consensus       500 ----------------------------------------------------~~g~~~----------------------  505 (693)
T PTZ00049        500 ----------------------------------------------------MNGSAN----------------------  505 (693)
T ss_pred             ----------------------------------------------------cccccc----------------------
Confidence                                                                000000                      


Q ss_pred             cccccCccccccccCccCCcCcCCcCCCCCCCCCCCCcccccccccCccccccCcceeeeEEEEc--CCCHHHHHHHHHh
Q psy1664         326 NWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSL--PANEETIMREIFR  403 (524)
Q Consensus       326 ~WGe~Gy~ri~~~~~~~~c~~~~~~~~~~C~~~~~~~p~C~~~C~~~~~~~y~~~~~~~~~~~~~--~~~~~~~~~~~~~  403 (524)
                               +.    +..+.+......+.|.     ...|...|... ...|.++..+...+|.+  ..++++||.+|++
T Consensus       506 ---------~~----~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~  566 (693)
T PTZ00049        506 ---------LR----QINAVFFSSETQSDMH-----ADFEAPISSEP-ARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYR  566 (693)
T ss_pred             ---------cc----cccccccccccccccc-----ccccccccccc-cceeeeeeEEecccccccCCCCHHHHHHHHHh
Confidence                     00    0000000000000010     00011111111 11122223333333443  2478999999999


Q ss_pred             CCCEEEEEecccccccccccEEeCC-------CCC--------------CccCeeEEEeeecCCCCCCCccCC--ccEEE
Q psy1664         404 HGPVEGSMTIYADMILYKTGIYKHV-------AGG--------------PLGEHAIRIIGWGQEPLGEGTSSV--VKYWL  460 (524)
Q Consensus       404 ~gPv~~~~~~~~~f~~y~~gi~~~~-------~~~--------------~~~~H~v~ivG~g~~~~~~~~~~~--~~ywi  460 (524)
                      +|||+|+|+++++|++|++|||+.+       |..              ..++|||+|||||.+..     .|  ++|||
T Consensus       567 ~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~e-----nG~~~~YWI  641 (693)
T PTZ00049        567 NGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEI-----NGKLYKYWI  641 (693)
T ss_pred             cCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEeccccC-----CCcccCEEE
Confidence            9999999999889999999999853       211              13699999999998631     14  48999


Q ss_pred             EEcCCCCCCCCCcEEEEEeCCCccCccccceeccceeccc
Q psy1664         461 VANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLE  500 (524)
Q Consensus       461 v~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p~~~~~  500 (524)
                      ||||||++||++|||||+||.|.||||++++++.|++..-
T Consensus       642 VRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~pd~~rg  681 (693)
T PTZ00049        642 GRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEPDFSRG  681 (693)
T ss_pred             EECCCCCCcccCceEEEEcCCCccCCccceeEEeeecccc
Confidence            9999999999999999999999999999999999998754

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=100.00  E-value=2.4e-51  Score=402.63  Aligned_cols=218  Identities=31%  Similarity=0.629  Sum_probs=173.9

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCC----CccccCCHHHHHhhcCCCCCCCCCCChH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRG----KRHVRLSSDDLVSCCKDCGNGCQGGFHG  172 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~----~~~~~LS~q~lvdC~~~~~~gC~GG~~~  172 (524)
                      ||++||||+.++++.+|+|||||+.||||||||++++||++++|+++.    ...+.||+|||+||+. .++||+||++.
T Consensus         1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~-~~~GC~GG~~~   79 (243)
T cd02621           1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ-YSQGCDGGFPF   79 (243)
T ss_pred             CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC-CCCCCCCCCHH
Confidence            799999999977777999999999999999999999999999998764    2368999999999974 46799999999


Q ss_pred             HHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCcccccccccccee-eeecCCC
Q psy1664         173 KAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRI-AYSLPAN  251 (524)
Q Consensus       173 ~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  251 (524)
                      .|++|++++|+++|++|       ||...       ..+.|......       +....      ...|... .+....+
T Consensus        80 ~a~~~~~~~Gi~~e~~y-------PY~~~-------~~~~C~~~~~~-------~~~~~------~~~~~~i~~~~~~~~  132 (243)
T cd02621          80 LVGKFAEDFGIVTEDYF-------PYTAD-------DDRPCKASPSE-------CRRYY------FSDYNYVGGCYGCTN  132 (243)
T ss_pred             HHHHHHHhcCcCCCcee-------CCCCC-------CCCCCCCCccc-------ccccc------ccceeEcccccccCC
Confidence            99999999999998777       99861       15667643200       00000      0011111 1112357


Q ss_pred             HHHHHHHHHHcCCeEEEEEecccccccCCceEEcCC----CCC---------CCCcEEEEEEeccCCCCCCCccceeEEE
Q psy1664         252 EETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA----GGP---------LGEHAIRIIGWGQEPLGEGTSSVVKYWL  318 (524)
Q Consensus       252 ~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~----~~~---------~~~HaV~iVGyg~~~~~~g~~~g~~YWi  318 (524)
                      +++||++|+++|||+|+|.++++|++|++|||+...    |..         .++|||+|||||++..     ++++|||
T Consensus       133 ~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~-----~g~~YWi  207 (243)
T cd02621         133 EDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEI-----KGEKYWI  207 (243)
T ss_pred             HHHHHHHHHHcCCEEEEEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCC-----CCCcEEE
Confidence            889999999999999999999999999999998763    421         4799999999998631     3689999


Q ss_pred             EeCCCCCcccccCccccccccCccCCcCcCC
Q psy1664         319 VANSFNTNWGENGLFRIGCRPYEIPCERYMN  349 (524)
Q Consensus       319 vkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~  349 (524)
                      ||||||++|||+|||||+|+..  .|++...
T Consensus       208 irNSWG~~WGe~Gy~~i~~~~~--~cgi~~~  236 (243)
T cd02621         208 VKNSWGSSWGEKGYFKIRRGTN--ECGIESQ  236 (243)
T ss_pred             EEcCCCCCCCcCCeEEEecCCc--ccCcccc
Confidence            9999999999999999999764  6887654

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=100.00  E-value=3.4e-51  Score=400.11  Aligned_cols=214  Identities=31%  Similarity=0.600  Sum_probs=168.7

Q ss_pred             CCCccccccCCCCCCCCccCCCCC---CCccHHHHHHHHHHHHHHHHHcCCC-ccccCCHHHHHhhcCCCCCCCCCCChH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQG---SCGSGWALGAVEAMSDRVCIASRGK-RHVRLSSDDLVSCCKDCGNGCQGGFHG  172 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg---~CGsCwAfA~~~~le~~~~i~~~~~-~~~~LS~q~lvdC~~~~~~gC~GG~~~  172 (524)
                      ||++||||+++.. .+|+||||||   .||||||||++++||++++|++++. ..+.||+|||+||+.  +.||+||++.
T Consensus         1 lP~~~Dwr~~~~~-~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~gC~GG~~~   77 (239)
T cd02698           1 LPKSWDWRNVNGV-NYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGGDPG   77 (239)
T ss_pred             CCCCcccccCCCC-cccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CCCccCcCHH
Confidence            7999999998322 2799999998   8999999999999999999987653 357899999999975  6799999999


Q ss_pred             HHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCcccc--ccccCCCccccccccccceeeeecCC
Q psy1664         173 KAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECI--RKCQPGYDVSYEDDLNFGRIAYSLPA  250 (524)
Q Consensus       173 ~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (524)
                      .|++|++++|+++|++|       ||...        ...|...... ..|.  ..|.............|    ..+ .
T Consensus        78 ~a~~~~~~~Gl~~e~~y-------PY~~~--------~~~C~~~~~~-~~c~~~~~c~~~~~~~~~~i~~~----~~~-~  136 (239)
T cd02698          78 GVYEYAHKHGIPDETCN-------PYQAK--------DGECNPFNRC-GTCNPFGECFAIKNYTLYFVSDY----GSV-S  136 (239)
T ss_pred             HHHHHHHHcCcCCCCee-------CCcCC--------CCCCcCCCCC-CCcccCcccccccccceEEeeec----eec-C
Confidence            99999999999998877       99865        4556432110 1111  11211100000011111    122 3


Q ss_pred             CHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCccccc
Q psy1664         251 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGEN  330 (524)
Q Consensus       251 ~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~  330 (524)
                      ++++||++|+++|||+|+|.++++|+.|++|||+..+|...++|||+|||||++.      ++++|||||||||++|||+
T Consensus       137 ~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~------~g~~YWiikNSWG~~WGe~  210 (239)
T cd02698         137 GRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDE------NGVEYWIVRNSWGEPWGER  210 (239)
T ss_pred             CHHHHHHHHHHcCCEEEEEEecccccccCCeEEccCCCCCcCCeEEEEEEEEecC------CCCEEEEEEcCCCcccCcC
Confidence            5789999999999999999999999999999999888877889999999999863      2689999999999999999


Q ss_pred             CccccccccC
Q psy1664         331 GLFRIGCRPY  340 (524)
Q Consensus       331 Gy~ri~~~~~  340 (524)
                      |||||+++.+
T Consensus       211 Gy~~i~rg~~  220 (239)
T cd02698         211 GWFRIVTSSY  220 (239)
T ss_pred             ceEEEEccCC
Confidence            9999999873

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=100.00  E-value=3.3e-49  Score=417.57  Aligned_cols=231  Identities=26%  Similarity=0.462  Sum_probs=178.5

Q ss_pred             CCCCCCccccccCCCCCCCCccCCCCCC---CccHHHHHHHHHHHHHHHHHcCCC----ccccCCHHHHHhhcCCCCCCC
Q psy1664          94 LEELPEGFDARINWPYCPTIQEIRDQGS---CGSGWALGAVEAMSDRVCIASRGK----RHVRLSSDDLVSCCKDCGNGC  166 (524)
Q Consensus        94 ~~~lP~s~DwR~~~~~~g~vtpvkdQg~---CGsCwAfA~~~~le~~~~i~~~~~----~~~~LS~q~lvdC~~~~~~gC  166 (524)
                      ..+||++||||++. .+.+|+||||||.   ||||||||++++||++++|++++.    ..+.||+|+|+||+. .++||
T Consensus       202 ~~~LP~sfDWR~~g-g~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~-~n~GC  279 (548)
T PTZ00364        202 GDPPPAAWSWGDVG-GASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ-YGQGC  279 (548)
T ss_pred             ccCCCCccccCcCC-CCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC-CCCCC
Confidence            35799999999982 2247899999999   999999999999999999998542    358899999999974 47899


Q ss_pred             CCCChHHHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeee
Q psy1664         167 QGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAY  246 (524)
Q Consensus       167 ~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (524)
                      +||++..|++|++++|+++|++|     |.||...     .+....|+.....                           
T Consensus       280 dGG~p~~A~~yi~~~GI~tE~dY-----~~PY~~~-----dg~~~~Ck~~~~~---------------------------  322 (548)
T PTZ00364        280 AGGFPEEVGKFAETFGILTTDSY-----YIPYDSG-----DGVERACKTRRPS---------------------------  322 (548)
T ss_pred             CCCcHHHHHHHHHhCCccccccc-----CCCCCCC-----CCCCCCCCCCccc---------------------------
Confidence            99999999999999999997766     4588653     0001112210000                           


Q ss_pred             ecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCc
Q psy1664         247 SLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTN  326 (524)
Q Consensus       247 ~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~  326 (524)
                                                                                                      
T Consensus       323 --------------------------------------------------------------------------------  322 (548)
T PTZ00364        323 --------------------------------------------------------------------------------  322 (548)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCccccccccCccCCcCcCCcCCCCCCCCCCCCcccccccccCccccccCcceeeeEEEEcCCCHHHHHHHHHhCCC
Q psy1664         327 WGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGP  406 (524)
Q Consensus       327 WGe~Gy~ri~~~~~~~~c~~~~~~~~~~C~~~~~~~p~C~~~C~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~gP  406 (524)
                                                                     ...+..+..+..+++.+..++++|+.+|+++||
T Consensus       323 -----------------------------------------------~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GP  355 (548)
T PTZ00364        323 -----------------------------------------------RRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGP  355 (548)
T ss_pred             -----------------------------------------------ceeeeeeeEEecceeecCCcHHHHHHHHHHcCC
Confidence                                                           000000111112233344578899999999999


Q ss_pred             EEEEEecccccccccccEEeCC---------CC----------CCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCC
Q psy1664         407 VEGSMTIYADMILYKTGIYKHV---------AG----------GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT  467 (524)
Q Consensus       407 v~~~~~~~~~f~~y~~gi~~~~---------~~----------~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~  467 (524)
                      |+|+|+++.+|+.|++|||...         ++          ...++|+|+|||||++.+      |++|||||||||+
T Consensus       356 VsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~------G~~YWIVKNSWGt  429 (548)
T PTZ00364        356 VPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDEN------GGDYWLVLDPWGS  429 (548)
T ss_pred             eEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCC------CceEEEEECCCCC
Confidence            9999999889999999998521         11          134799999999997542      7899999999999


Q ss_pred             --CCCCCcEEEEEeCCCccCccccceeccce
Q psy1664         468 --NWGENGLFRIVRGQNECGIEADITAGLPK  496 (524)
Q Consensus       468 --~WG~~Gy~~i~~g~~~cgi~~~~~~~~p~  496 (524)
                        +||++|||||+||.|+||||+.++++.|.
T Consensus       430 ~~~WGE~GYfRI~RG~N~CGIes~~v~~~~~  460 (548)
T PTZ00364        430 RRSWCDGGTRKIARGVNAYNIESEVVVMYWA  460 (548)
T ss_pred             CCCcccCCeEEEEcCCCcccccceeeeeeee
Confidence              99999999999999999999999988884

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=100.00  E-value=1.1e-48  Score=375.76  Aligned_cols=204  Identities=33%  Similarity=0.616  Sum_probs=170.4

Q ss_pred             CCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHHH
Q psy1664          98 PEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKY  177 (524)
Q Consensus        98 P~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~  177 (524)
                      |++||||+.    +.++||+|||.||+|||||++++||++++++++  ..+.||+|+|++|....+.+|.||++..|+++
T Consensus         1 P~~~d~r~~----~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~   74 (210)
T cd02248           1 PESVDWREK----GAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTG--KLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEY   74 (210)
T ss_pred             CCcccCCcC----CCCCCCccCCCCcchHHhHHHHHHHHHHHHHcC--CCcccCHHHHhccCCCCCCCCCCCCHHHhHHH
Confidence            889999998    669999999999999999999999999999876  46889999999997644579999999999999


Q ss_pred             HHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCC-CHHHHH
Q psy1664         178 WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-NEETIM  256 (524)
Q Consensus       178 ~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ik  256 (524)
                      +++.|+++|++|       ||...        ...|......         ..+     +...    ...+.. +.++||
T Consensus        75 ~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~---------~~~-----~i~~----~~~i~~~~~~~ik  121 (210)
T cd02248          75 VKNGGLASESDY-------PYTGK--------DGTCKYNSSK---------VGA-----KITG----YSNVPPGDEEALK  121 (210)
T ss_pred             HHHCCcCccccC-------CccCC--------CCCccCCCCc---------ccE-----EEee----EEEcCCCcHHHHH
Confidence            999999998888       99864        4556543210         000     1111    123333 478999


Q ss_pred             HHHHHcCCeEEEEEecccccccCCceEEcCCC-CCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcccc
Q psy1664         257 REIFRHGPVEGSMTIYADMILYKTGIYKHVAG-GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI  335 (524)
Q Consensus       257 ~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~-~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri  335 (524)
                      ++|+++|||+++|.++++|+.|++|||..+.+ ...++|||+|||||++       .+.+|||||||||++||++|||||
T Consensus       122 ~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~~~-------~~~~ywiv~NSWG~~WG~~Gy~~i  194 (210)
T cd02248         122 AALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYGTE-------NGVDYWIVKNSWGTSWGEKGYIRI  194 (210)
T ss_pred             HHHhhcCCEEEEEecCcccccCCCCceeCCCCCCCcCCEEEEEEEEeec-------CCceEEEEEcCCCCccccCcEEEE
Confidence            99999999999999999999999999998877 4568999999999987       368999999999999999999999


Q ss_pred             ccccCccCCcCcCC
Q psy1664         336 GCRPYEIPCERYMN  349 (524)
Q Consensus       336 ~~~~~~~~c~~~~~  349 (524)
                      +++..  .|++...
T Consensus       195 ~~~~~--~cgi~~~  206 (210)
T cd02248         195 ARGSN--LCGIASY  206 (210)
T ss_pred             EcCCC--ccCceee
Confidence            98773  6887643

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>KOG1544|consensus

Probab=100.00  E-value=1.8e-48  Score=371.58  Aligned_cols=302  Identities=35%  Similarity=0.649  Sum_probs=232.1

Q ss_pred             hhhhhhcCCCCcccccccc-ccccchHHH-HHHHhCCCCCCCCCCCCCCcccccCCCCCCCCCccccccCCCCCCCCccC
Q psy1664          39 RVDHSILLPKLPFYGAEKN-ALSKLTLSE-LEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEI  116 (524)
Q Consensus        39 ~I~~~N~~~~~~~~~~g~N-~fsd~t~eE-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpv  116 (524)
                      +|+++|+..  .+|+++.. +|=.||.++ |+-+||..+++....+.. +....-.+...||+.||.|.+||  +++.++
T Consensus       152 ~iE~in~G~--YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMN-Ei~~~l~p~~~LPE~F~As~KWp--~liH~p  226 (470)
T KOG1544|consen  152 MIEAINQGN--YGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMN-EIYTVLNPGEVLPEAFEASEKWP--NLIHEP  226 (470)
T ss_pred             HHHHHhcCC--ccccccchhhhhcccccccceeeecccCchhhhhhHH-hHhhccCcccccchhhhhhhcCC--ccccCc
Confidence            499999877  79999844 688888876 666788766543211111 11112233468999999999999  679999


Q ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHHHHHHhCCccCCccCCCCCcc
Q psy1664         117 RDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCR  196 (524)
Q Consensus       117 kdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~  196 (524)
                      .|||.|++.|||+++++..++++|.+.|+....||+|+|++|.....+||+||....|+-||++.|++.       ..|+
T Consensus       227 lDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKrGvVs-------dhCY  299 (470)
T KOG1544|consen  227 LDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKRGVVS-------DHCY  299 (470)
T ss_pred             cccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecccccc-------cccc
Confidence            999999999999999999999999999988899999999999876567999999999999999999997       5566


Q ss_pred             ccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEEEeccccc
Q psy1664         197 PYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI  276 (524)
Q Consensus       197 PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~  276 (524)
                      ||....    +...+.|...+                                                           
T Consensus       300 P~~~dQ----~~~~~~C~m~s-----------------------------------------------------------  316 (470)
T KOG1544|consen  300 PFSGDQ----AGPAPPCMMHS-----------------------------------------------------------  316 (470)
T ss_pred             cccCCC----CCCCCCceeec-----------------------------------------------------------
Confidence            997540    00111111000                                                           


Q ss_pred             ccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccccccccCccCCcCcCCcCCCCCC
Q psy1664         277 LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQ  356 (524)
Q Consensus       277 ~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~~~~~C~  356 (524)
                                          ...|+|                                                      
T Consensus       317 --------------------R~~grg------------------------------------------------------  322 (470)
T KOG1544|consen  317 --------------------RAMGRG------------------------------------------------------  322 (470)
T ss_pred             --------------------cccCcc------------------------------------------------------
Confidence                                001222                                                      


Q ss_pred             CCCCCCcccccccccCccccccCcceeeeEEEEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCC------
Q psy1664         357 ANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAG------  430 (524)
Q Consensus       357 ~~~~~~p~C~~~C~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~------  430 (524)
                           +.+.++-|++++..  .++.+.....|++.++|++|+++||++|||.+.|.|.++|+.|++|||.+.+.      
T Consensus       323 -----kRqat~~CPn~~~~--Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e  395 (470)
T KOG1544|consen  323 -----KRQATAHCPNSYVN--SNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPE  395 (470)
T ss_pred             -----cccccCcCCCcccc--cCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCch
Confidence                 12222334333321  12455666778999999999999999999999999999999999999987642      


Q ss_pred             --CCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCCCcEEEEEeCCCccCccccceeccceec
Q psy1664         431 --GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIG  498 (524)
Q Consensus       431 --~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p~~~  498 (524)
                        ...+.|+|.|.|||++....|.  ..+|||..||||+.||++|||||.||.|+|.||+.++++.-.++
T Consensus       396 ~yr~~gtHsVk~tGWG~~~~~~G~--~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvIgAWGr~~  463 (470)
T KOG1544|consen  396 RYRRHGTHSVKITGWGEETLPDGR--TLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVIGAWGRVG  463 (470)
T ss_pred             hhhhcccceEEEeecccccCCCCC--eeEEEEeecccccccccCceEEEeccccchhhhHhhhhhhhccc
Confidence              1347999999999998755555  78999999999999999999999999999999999988876554

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=100.00  E-value=2.8e-46  Score=360.66  Aligned_cols=210  Identities=35%  Similarity=0.649  Sum_probs=165.2

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||+.+   +.++||+||+.||+|||||++++||++++++.+ ...+.||+|+|++|....+.+|+||++..|++
T Consensus         1 lP~~~D~r~~~---~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~-~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~   76 (219)
T PF00112_consen    1 LPKSFDWRDKG---GRITPVRDQGSCGSCWAFAAAAALESRLAIQNN-GKNVDLSEQYLIDCSNKYNKGCDGGSPFDALK   76 (219)
T ss_dssp             STSSEEGGGTT---TCSG---BTTSSBTHHHHHHHHHHHHHHHHHHT-SSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHH
T ss_pred             CCCCEecccCC---CCcCccccCCcccccccchhccceecccccccc-ccccccccccccccccccccccccCcccccce
Confidence            89999999962   368999999999999999999999999999985 46799999999999864457999999999999


Q ss_pred             HHHH-hCCccCCccCCCCCccccccCcccccCCCC-CCCCCCCCCCccccccccCCCccccccccccceeeeecC-CCHH
Q psy1664         177 YWVT-TGIVSGGTYASKQGCRPYEIPCERYMNGSH-SSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANEE  253 (524)
Q Consensus       177 ~~~~-~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~-~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  253 (524)
                      ++++ +|+++|+.|       ||...        . ..|.......             ...+...|    ..+. .+.+
T Consensus        77 ~~~~~~Gi~~e~~~-------pY~~~--------~~~~c~~~~~~~-------------~~~~i~~~----~~~~~~~~~  124 (219)
T PF00112_consen   77 YIKNNNGIVTEEDY-------PYNGN--------ENPTCKSKKSNS-------------YYVKIKGY----GKVKDNDIE  124 (219)
T ss_dssp             HHHHHTSBEBTTTS---------SSS--------SSCSSCHSGGGE-------------EEBEESEE----EEEESTCHH
T ss_pred             eecccCcccccccc-------ccccc--------cccccccccccc-------------cccccccc----ccccccchh
Confidence            9999 899998888       99865        2 3454321100             00111111    1222 2589


Q ss_pred             HHHHHHHHcCCeEEEEEecc-cccccCCceEEcCCCC-CCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccC
Q psy1664         254 TIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGG-PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG  331 (524)
Q Consensus       254 ~ik~~l~~~GPV~v~i~v~~-~f~~Y~sGIy~~~~~~-~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~G  331 (524)
                      +||++|+++|||+++|.+.+ +|+.|++|||..+.+. ..++|||+|||||++       .+++|||||||||++||++|
T Consensus       125 ~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~~~-------~~~~~wiv~NSWG~~WG~~G  197 (219)
T PF00112_consen  125 DIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDCSNESGGHAVLIVGYDDE-------NGKGYWIVKNSWGTDWGDNG  197 (219)
T ss_dssp             HHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSSSSSSEEEEEEEEEEEEE-------TTEEEEEEE-SBTTTSTBTT
T ss_pred             HHHHHHhhCceeeeeeeccccccccccceeeeccccccccccccccccccccc-------cceeeEeeehhhCCccCCCe
Confidence            99999999999999999998 6999999999998665 478999999999987       47899999999999999999


Q ss_pred             ccccccccCccCCcCcCCc
Q psy1664         332 LFRIGCRPYEIPCERYMNG  350 (524)
Q Consensus       332 y~ri~~~~~~~~c~~~~~~  350 (524)
                      ||||+++.. ..|++....
T Consensus       198 y~~i~~~~~-~~c~i~~~~  215 (219)
T PF00112_consen  198 YFRISYDYN-NECGIESQA  215 (219)
T ss_dssp             EEEEESSSS-SGGGTTSSE
T ss_pred             EEEEeeCCC-CcCccCcee
Confidence            999999765 257776544

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>smart00645 Pept_C1 Papain family cysteine protease

Probab=100.00  E-value=1.9e-43  Score=328.69  Aligned_cols=164  Identities=40%  Similarity=0.780  Sum_probs=140.0

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++++||+||+.||+|||||++++||++++++++.  .+.||+|+|++|....++||.||++..|++
T Consensus         1 lP~~~D~R~~----~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~--~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~   74 (174)
T smart00645        1 LPESFDWRKK----GAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGK--LVSLSEQQLVDCSTGGNNGCNGGLPDNAFE   74 (174)
T ss_pred             CCCcCccccc----CCCCccccCcccchHHHHHHHHHHHHHHHHhcCC--ccccCHHHHhhhcCCCCCCCCCcCHHHHHH
Confidence            7999999998    5789999999999999999999999999999863  689999999999765345999999999999


Q ss_pred             HHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHH
Q psy1664         177 YWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETI  255 (524)
Q Consensus       177 ~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  255 (524)
                      |++++ |+++|+.|       ||+.                                                       
T Consensus        75 ~~~~~~Gi~~e~~~-------PY~~-------------------------------------------------------   92 (174)
T smart00645       75 YIKKNGGLETESCY-------PYTG-------------------------------------------------------   92 (174)
T ss_pred             HHHHcCCccccccc-------Cccc-------------------------------------------------------
Confidence            99998 99997777       9841                                                       


Q ss_pred             HHHHHHcCCeEEEEEecccccccCCceEEcCCCCC-CCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccc
Q psy1664         256 MREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGP-LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR  334 (524)
Q Consensus       256 k~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~-~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~r  334 (524)
                                ++.+.+. +|+.|++|||+.+.|.. .++|+|+|||||.+.      ++++|||||||||+.|||+||||
T Consensus        93 ----------~~~~~~~-~f~~Y~~Gi~~~~~~~~~~~~Hav~ivGyg~~~------~g~~yWii~NSwG~~WG~~G~~~  155 (174)
T smart00645       93 ----------SVAIDAS-DFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEE------NGKDYWIVKNSWGTDWGENGYFR  155 (174)
T ss_pred             ----------EEEEEcc-cccCCcCeEECCCCCCCCcccEEEEEEEEeecC------CCeeEEEEECCCCCCcccCeEEE
Confidence                      3444443 69999999998865543 479999999999752      46899999999999999999999


Q ss_pred             cccccCccCCcC
Q psy1664         335 IGCRPYEIPCER  346 (524)
Q Consensus       335 i~~~~~~~~c~~  346 (524)
                      |+++.+ ..|++
T Consensus       156 i~~~~~-~~c~i  166 (174)
T smart00645      156 IARGKN-NECGI  166 (174)
T ss_pred             EEcCCC-CccCc
Confidence            998752 25666

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=100.00  E-value=4.3e-41  Score=325.17  Aligned_cols=202  Identities=26%  Similarity=0.396  Sum_probs=157.2

Q ss_pred             ccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCC----CCCCCCChHHHH
Q psy1664         100 GFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCG----NGCQGGFHGKAW  175 (524)
Q Consensus       100 s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~----~gC~GG~~~~a~  175 (524)
                      .||||+.    + ++||+|||.||+|||||++++||++++++......+.||+|+|++|.....    .+|.||.+..++
T Consensus         1 ~~d~r~~----~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~   75 (223)
T cd02619           1 SVDLRPL----R-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSAL   75 (223)
T ss_pred             CCcchhc----C-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHH
Confidence            4899998    6 899999999999999999999999999987533468999999999976532    699999999999


Q ss_pred             H-HHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecC-CCHH
Q psy1664         176 K-YWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANEE  253 (524)
Q Consensus       176 ~-~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  253 (524)
                      . +++++|+++|++|       ||...        ...|........       ...   ......|    ..+. .+++
T Consensus        76 ~~~~~~~Gi~~e~~~-------Py~~~--------~~~~~~~~~~~~-------~~~---~~~~~~y----~~~~~~~~~  126 (223)
T cd02619          76 LKLVALKGIPPEEDY-------PYGAE--------SDGEEPKSEAAL-------NAA---KVKLKDY----RRVLKNNIE  126 (223)
T ss_pred             HHHHHHcCCCccccC-------CCCCC--------CCCCCCCCccch-------hhc---ceeecce----eEeCchhHH
Confidence            8 8889999998888       99865        333322110000       000   0011111    1222 3478


Q ss_pred             HHHHHHHHcCCeEEEEEecccccccCCceEE-----c-CCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcc
Q psy1664         254 TIMREIFRHGPVEGSMTIYADMILYKTGIYK-----H-VAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNW  327 (524)
Q Consensus       254 ~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~-----~-~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~W  327 (524)
                      +||++|+++|||+++|.++.+|+.|++|+|.     . .++...++|||+|||||++..     .+++|||||||||+.|
T Consensus       127 ~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~-----~~~~~~i~~NSwG~~w  201 (223)
T cd02619         127 DIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYV-----EGKGAFIVKNSWGTDW  201 (223)
T ss_pred             HHHHHHHHCCCEEEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeecCCCC-----CCCCEEEEEeCCCCcc
Confidence            9999999999999999999999999999873     2 223446899999999998731     2689999999999999


Q ss_pred             cccCccccccccC
Q psy1664         328 GENGLFRIGCRPY  340 (524)
Q Consensus       328 Ge~Gy~ri~~~~~  340 (524)
                      |++||+||++...
T Consensus       202 g~~Gy~~i~~~~~  214 (223)
T cd02619         202 GDNGYGRISYEDV  214 (223)
T ss_pred             ccCCEEEEehhhh
Confidence            9999999998765

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=100.00  E-value=4.8e-40  Score=359.82  Aligned_cols=223  Identities=21%  Similarity=0.379  Sum_probs=155.6

Q ss_pred             CCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCC-CCCCCCCC-hHHHHHHHHHhC-C
Q psy1664         107 WPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC-GNGCQGGF-HGKAWKYWVTTG-I  183 (524)
Q Consensus       107 ~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~-~~gC~GG~-~~~a~~~~~~~G-i  183 (524)
                      ++.|....||||||.||+|||||++++||++++|+++  ..+.||+|+|+||+... ..||.||+ +..++.|++++| +
T Consensus       538 ~~sC~s~i~VKDQG~CGSCWAFASaaaLES~~cIkgg--~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgL  615 (1004)
T PTZ00462        538 ENNCISKIQIEDQGNCAISWIFASKYHLETIKCMKGY--EPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFL  615 (1004)
T ss_pred             CCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHHhcC--CCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCC
Confidence            5777777899999999999999999999999999875  46899999999998643 46999997 556679998885 7


Q ss_pred             ccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccC---C-Cccccccccccceeeee-----cCCCHHH
Q psy1664         184 VSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQP---G-YDVSYEDDLNFGRIAYS-----LPANEET  254 (524)
Q Consensus       184 ~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~-----~~~~~~~  254 (524)
                      ++|++|       ||...      ...+.|+........+-.....   . ..........|....-.     +..-++.
T Consensus       616 ptESdY-------PYt~k------~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~  682 (1004)
T PTZ00462        616 PADSNY-------LYNYT------KVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKI  682 (1004)
T ss_pred             cccccC-------CCccC------CCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHH
Confidence            777777       99753      1245676432211111000000   0 00000011112111000     0011468


Q ss_pred             HHHHHHHcCCeEEEEEecccccccC-CceEEcCCCC-CCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCc
Q psy1664         255 IMREIFRHGPVEGSMTIYADMILYK-TGIYKHVAGG-PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL  332 (524)
Q Consensus       255 ik~~l~~~GPV~v~i~v~~~f~~Y~-sGIy~~~~~~-~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy  332 (524)
                      |+++|+.+|||+|+|++. +|+.|. +|||....|. ..++|||+|||||.+.+.++  .+++|||||||||+.|||+||
T Consensus       683 IK~eI~~kGPVaV~IdAs-df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg--~gk~YWIVRNSWGt~WGEnGY  759 (1004)
T PTZ00462        683 IKDEIMNKGSVIAYIKAE-NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDED--EKKSYWIVRNSWGKYWGDEGY  759 (1004)
T ss_pred             HHHHHHhcCCEEEEEEee-hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccC--CCCceEEEEcCCCCCcCCCeE
Confidence            999999999999999985 788885 8987766565 45799999999997532111  357999999999999999999


Q ss_pred             cccccccCccCCcCcC
Q psy1664         333 FRIGCRPYEIPCERYM  348 (524)
Q Consensus       333 ~ri~~~~~~~~c~~~~  348 (524)
                      |||+|+.. ..|++..
T Consensus       760 FKI~r~g~-n~CGin~  774 (1004)
T PTZ00462        760 FKVDMYGP-SHCEDNF  774 (1004)
T ss_pred             EEEEeCCC-CCCccch
Confidence            99999532 2688754

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=99.95  E-value=3e-27  Score=231.18  Aligned_cols=99  Identities=34%  Similarity=0.682  Sum_probs=90.7

Q ss_pred             CCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCC
Q psy1664         392 ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE  471 (524)
Q Consensus       392 ~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~  471 (524)
                      .++++||.+|+++|||+++|.++.+|+.|++|||+..++...++|+|+|||||++..      +++|||||||||++||+
T Consensus       136 ~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~------g~~YWiikNSWG~~WGe  209 (239)
T cd02698         136 SGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDEN------GVEYWIVRNSWGEPWGE  209 (239)
T ss_pred             CCHHHHHHHHHHcCCEEEEEEecccccccCCeEEccCCCCCcCCeEEEEEEEEecCC------CCEEEEEEcCCCcccCc
Confidence            468899999999999999999988999999999988776667899999999998652      78999999999999999


Q ss_pred             CcEEEEEeCC-----CccCccccceeccce
Q psy1664         472 NGLFRIVRGQ-----NECGIEADITAGLPK  496 (524)
Q Consensus       472 ~Gy~~i~~g~-----~~cgi~~~~~~~~p~  496 (524)
                      +|||||+||.     |+||||++++++.|.
T Consensus       210 ~Gy~~i~rg~~~~~~~~~~i~~~~~~~~~~  239 (239)
T cd02698         210 RGWFRIVTSSYKGARYNLAIEEDCAWADPI  239 (239)
T ss_pred             CceEEEEccCCcccccccccccceEEEeeC
Confidence            9999999999     999999999988873

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>KOG1543|consensus

Probab=99.95  E-value=2.1e-27  Score=240.58  Aligned_cols=111  Identities=42%  Similarity=0.809  Sum_probs=100.4

Q ss_pred             CcceeeeEEEEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCC-ccCeeEEEeeecCCCCCCCccCCcc
Q psy1664         379 DDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGP-LGEHAIRIIGWGQEPLGEGTSSVVK  457 (524)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~-~~~H~v~ivG~g~~~~~~~~~~~~~  457 (524)
                      .+.++..+.+.++.+|++|+++|+.+|||+|+|++..+|+.|++|||.++++.. .++|+|+|||||+.+       +.+
T Consensus       213 ~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~~~-------~~~  285 (325)
T KOG1543|consen  213 DKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGVYAEEKGDDKEGDHAVLIVGYGTGD-------GVD  285 (325)
T ss_pred             cceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCceEeCCCCCCCCCCceEEEEEEcCCC-------Cce
Confidence            456777888889999999999999999999999998899999999999988776 499999999999933       789


Q ss_pred             EEEEEcCCCCCCCCCcEEEEEeCCCccCccccceeccce
Q psy1664         458 YWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK  496 (524)
Q Consensus       458 ywiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p~  496 (524)
                      |||||||||+.||++|||||.|+.+.|+|++.+.++.|.
T Consensus       286 YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~~  324 (325)
T KOG1543|consen  286 YWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPIK  324 (325)
T ss_pred             eEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCCC
Confidence            999999999999999999999999999999987765543

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=99.94  E-value=9.3e-27  Score=228.50  Aligned_cols=101  Identities=42%  Similarity=0.931  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCC----C-C--------CccCeeEEEeeecCCCCCCCccCCcc
Q psy1664         391 PANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA----G-G--------PLGEHAIRIIGWGQEPLGEGTSSVVK  457 (524)
Q Consensus       391 ~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~----~-~--------~~~~H~v~ivG~g~~~~~~~~~~~~~  457 (524)
                      ..++++||.+|+++|||+++|++.++|++|++|||+...    | .        ..++|+|+|||||++..     ++++
T Consensus       130 ~~~~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~-----~g~~  204 (243)
T cd02621         130 CTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEI-----KGEK  204 (243)
T ss_pred             cCCHHHHHHHHHHcCCEEEEEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCC-----CCCc
Confidence            357899999999999999999998899999999998752    1 1        24799999999998751     2779


Q ss_pred             EEEEEcCCCCCCCCCcEEEEEeCCCccCccccceeccce
Q psy1664         458 YWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK  496 (524)
Q Consensus       458 ywiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p~  496 (524)
                      |||||||||++||++|||||+||.|.|||++.+++++|.
T Consensus       205 YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~~~~~  243 (243)
T cd02621         205 YWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFAYPI  243 (243)
T ss_pred             EEEEEcCCCCCCCcCCeEEEecCCcccCcccceEeeccC
Confidence            999999999999999999999999999999999998884

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>KOG1542|consensus

Probab=99.94  E-value=1e-26  Score=226.44  Aligned_cols=105  Identities=29%  Similarity=0.581  Sum_probs=91.9

Q ss_pred             eeeeEEEEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeC---CCCCCccCeeEEEeeecCCCCCCCccCCccE
Q psy1664         382 NFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKH---VAGGPLGEHAIRIIGWGQEPLGEGTSSVVKY  458 (524)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~---~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~y  458 (524)
                      .+....+.++.||++|.+.|.++|||+|+|++. .+++|.+||+.+   .|....++|+|||||||.+..      ..+|
T Consensus       262 v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa~-~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~------~~PY  334 (372)
T KOG1542|consen  262 VSIKDFSMLSNNEDQIAAWLVTFGPLSVGINAK-PMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGY------EKPY  334 (372)
T ss_pred             EEEeccEecCCCHHHHHHHHHhcCCeEEEEchH-HHHHhcccccCCCcccCCccccCceEEEEeecCCCC------CCce
Confidence            344556677889999999999999999999974 599999999987   344455999999999998752      6899


Q ss_pred             EEEEcCCCCCCCCCcEEEEEeCCCccCccccceec
Q psy1664         459 WLVANSFNTNWGENGLFRIVRGQNECGIEADITAG  493 (524)
Q Consensus       459 wiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~  493 (524)
                      ||||||||++||++||+||.||.|.|||++.++++
T Consensus       335 WIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~  369 (372)
T KOG1542|consen  335 WIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSA  369 (372)
T ss_pred             EEEECCccccccccceEEEeccccccccccchhhh
Confidence            99999999999999999999999999999987654

>PTZ00203 cathepsin L protease; Provisional

Probab=99.93  E-value=5.7e-26  Score=231.81  Aligned_cols=99  Identities=22%  Similarity=0.495  Sum_probs=86.8

Q ss_pred             EEEEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCC
Q psy1664         386 IAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSF  465 (524)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSW  465 (524)
                      .+..++.++++|+.+|+++|||+++|++. +|++|++|||.. |....++|+|+|||||+++       +++||||||||
T Consensus       240 ~~~~i~~~e~~~~~~l~~~GPv~v~i~a~-~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~~-------g~~YWiikNSW  310 (348)
T PTZ00203        240 GYVSMESSERVMAAWLAKNGPISIAVDAS-SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMTG-------EVPYWVIKNSW  310 (348)
T ss_pred             ceeecCcCHHHHHHHHHhCCCEEEEEEhh-hhcCccCceeec-cCCCCCCeEEEEEEEecCC-------CceEEEEEcCC
Confidence            44556668899999999999999999995 899999999975 4444579999999999876       88999999999


Q ss_pred             CCCCCCCcEEEEEeCCCccCccccceec
Q psy1664         466 NTNWGENGLFRIVRGQNECGIEADITAG  493 (524)
Q Consensus       466 G~~WG~~Gy~~i~~g~~~cgi~~~~~~~  493 (524)
                      |++||++|||||+||.|.|||++.++.+
T Consensus       311 G~~WGe~GY~ri~rg~n~Cgi~~~~~~~  338 (348)
T PTZ00203        311 GEDWGEKGYVRVTMGVNACLLTGYPVSV  338 (348)
T ss_pred             CCCcCcCceEEEEcCCCcccccceEEEE
Confidence            9999999999999999999999776543

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=5.7e-26  Score=223.77  Aligned_cols=205  Identities=24%  Similarity=0.251  Sum_probs=128.1

Q ss_pred             CCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhc-CCCCCCC-----CC
Q psy1664          95 EELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCC-KDCGNGC-----QG  168 (524)
Q Consensus        95 ~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~-~~~~~gC-----~G  168 (524)
                      ..||+.||||..    |.|+||||||.||+||||+++++||+.+.-..    ...+|+-.+..-. ..+..+|     +|
T Consensus        97 ~s~~~~fd~r~~----g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~----~w~~s~~nm~~ll~~~ye~~fd~~~~d~  168 (372)
T COG4870          97 ASLPSYFDRRDE----GKVSPVKDQGSGGSCWAFATTRSLESYLNPES----AWDFSENNMKNLLGVPYEKGFDYTSNDG  168 (372)
T ss_pred             ccchhheeeecc----CCcccccccCcccceEeeeehhhhhheecccc----cccccccchhhhcCCCccccCCCccccC
Confidence            358999999999    88999999999999999999999999885532    3455554443221 1111222     36


Q ss_pred             CChHHHHHHHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCC---CCccccccccCCCcccccccccccee
Q psy1664         169 GFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEP---NTPECIRKCQPGYDVSYEDDLNFGRI  244 (524)
Q Consensus       169 G~~~~a~~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (524)
                      |....+.-|+.+. |-+.+.+-       ||...        ...|....+   ....|...+..               
T Consensus       169 g~~~m~~a~l~e~sgpv~et~d-------~y~~~--------s~~~~~~~p~~k~~~~~~~i~~~---------------  218 (372)
T COG4870         169 GNADMSAAYLTEWSGPVYETDD-------PYSEN--------SYFSPTNLPVTKHVQEAQIIPSR---------------  218 (372)
T ss_pred             CccccccccccccCCcchhhcC-------ccccc--------cccCCcCCchhhccccceecccc---------------
Confidence            7766666666554 76666555       66543        222222111   11111100000               


Q ss_pred             eeecCCCHHHHHHHHHHcCCeEEEEEecc-cccccCCceEEcCCCCCCCCcEEEEEEeccCCCC---CCCccceeEEEEe
Q psy1664         245 AYSLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG---EGTSSVVKYWLVA  320 (524)
Q Consensus       245 ~~~~~~~~~~ik~~l~~~GPV~v~i~v~~-~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~---~g~~~g~~YWivk  320 (524)
                        .-..+...|++++...|-++.+|.+.. .+.....+.|..... ...+|||+||||++....   +....|.+.||||
T Consensus       219 --~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~~~~~~~~~~s~-~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiik  295 (372)
T COG4870         219 --KKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYVDSG-ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIK  295 (372)
T ss_pred             --hhhhcccchHHHHhhhccccceeEEecccccccccCCCCCCcc-ccccceEEEEeccccccccccccCCCCCceEEEE
Confidence              001123347888888888876666542 222233344433322 567999999999986431   1234567799999


Q ss_pred             CCCCCcccccCccccccccC
Q psy1664         321 NSFNTNWGENGLFRIGCRPY  340 (524)
Q Consensus       321 NSWG~~WGe~Gy~ri~~~~~  340 (524)
                      ||||++||++|||||+.+..
T Consensus       296 NSWGt~wG~~GYfwisY~ya  315 (372)
T COG4870         296 NSWGTNWGENGYFWISYYYA  315 (372)
T ss_pred             CccccccccCceEEEEeeec
Confidence            99999999999999997643

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=99.92  E-value=1e-24  Score=209.25  Aligned_cols=101  Identities=35%  Similarity=0.645  Sum_probs=88.6

Q ss_pred             eeEEEEcCC-CHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCC-CCccCeeEEEeeecCCCCCCCccCCccEEEE
Q psy1664         384 GRIAYSLPA-NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAG-GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLV  461 (524)
Q Consensus       384 ~~~~~~~~~-~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~-~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv  461 (524)
                      ...+..+.. ++++||++|+++|||+++|.+.++|+.|++|||..+++ ...++|+|+|||||++.       +.+||||
T Consensus       106 i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~~~~-------~~~ywiv  178 (210)
T cd02248         106 ITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYGTEN-------GVDYWIV  178 (210)
T ss_pred             EeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeCCCCCCCcCCEEEEEEEEeecC-------CceEEEE
Confidence            334445543 48899999999999999999988999999999988766 45689999999999987       7899999


Q ss_pred             EcCCCCCCCCCcEEEEEeCCCccCccccce
Q psy1664         462 ANSFNTNWGENGLFRIVRGQNECGIEADIT  491 (524)
Q Consensus       462 ~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~  491 (524)
                      |||||+.||++|||||.++.|.|||++.+.
T Consensus       179 ~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~  208 (210)
T cd02248         179 KNSWGTSWGEKGYIRIARGSNLCGIASYAS  208 (210)
T ss_pred             EcCCCCccccCcEEEEEcCCCccCceeeee
Confidence            999999999999999999999999997743

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=99.92  E-value=3.7e-25  Score=215.98  Aligned_cols=94  Identities=49%  Similarity=0.992  Sum_probs=82.5

Q ss_pred             ecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCc
Q psy1664         247 SLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTN  326 (524)
Q Consensus       247 ~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~  326 (524)
                      .+..++++||++|+++|||+|+|.++++|+.|++|||+..++...++|||+|||||++       ++++|||||||||++
T Consensus       139 ~~~~~~~~ik~~l~~~GPv~v~i~~~~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~-------~g~~YWivrNSWG~~  211 (236)
T cd02620         139 SVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVE-------NGVPYWLAANSWGTD  211 (236)
T ss_pred             eeCCHHHHHHHHHHHCCCeEEEEEechhhhhcCCcEEeecCCCCcCCeEEEEEEEecc-------CCeeEEEEEeCCCCC
Confidence            4455789999999999999999999999999999999876555567999999999986       468999999999999


Q ss_pred             ccccCccccccccCccCCcCcCC
Q psy1664         327 WGENGLFRIGCRPYEIPCERYMN  349 (524)
Q Consensus       327 WGe~Gy~ri~~~~~~~~c~~~~~  349 (524)
                      |||+|||||+++..  .|++.+.
T Consensus       212 WGe~Gy~ri~~~~~--~cgi~~~  232 (236)
T cd02620         212 WGENGYFRILRGSN--ECGIESE  232 (236)
T ss_pred             CCCCcEEEEEccCc--ccccccc
Confidence            99999999999764  6887653

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>PTZ00021 falcipain-2; Provisional

Probab=99.90  E-value=7.1e-24  Score=222.68  Aligned_cols=107  Identities=28%  Similarity=0.583  Sum_probs=86.2

Q ss_pred             EEEEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCCccCeeEEEeeecCCCCCC---CccCCccEEEEE
Q psy1664         386 IAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGE---GTSSVVKYWLVA  462 (524)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~---~~~~~~~ywiv~  462 (524)
                      ++..++  +.+|+++|+.+|||+|+|++..+|++|++|||..+|.. .++|||+|||||++...+   +...+.+|||||
T Consensus       375 ~y~~i~--~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVK  451 (489)
T PTZ00021        375 SYVSIP--EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDGECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIK  451 (489)
T ss_pred             eEEEec--HHHHHHHHHhcCCeEEEEEeecccccCCCCcCCCCCCC-ccceEEEEEEecCcCCcccccccCCCCCEEEEE
Confidence            334444  57899999999999999999889999999999876543 479999999999764111   111246899999


Q ss_pred             cCCCCCCCCCcEEEEEeCC----CccCccccceecccee
Q psy1664         463 NSFNTNWGENGLFRIVRGQ----NECGIEADITAGLPKI  497 (524)
Q Consensus       463 NSWG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~  497 (524)
                      ||||++||++|||||+|+.    |.|||.+.+.  +|.+
T Consensus       452 NSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~--yP~~  488 (489)
T PTZ00021        452 NSWGESWGEKGFIRIETDENGLMKTCSLGTEAY--VPLI  488 (489)
T ss_pred             CCCCCCcccCeEEEEEcCCCCCCCCCCCcccce--eEec
Confidence            9999999999999999986    5899999854  5654

>PTZ00200 cysteine proteinase; Provisional

Probab=99.90  E-value=1.6e-23  Score=219.32  Aligned_cols=95  Identities=27%  Similarity=0.610  Sum_probs=79.6

Q ss_pred             HHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCCCcE
Q psy1664         395 ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL  474 (524)
Q Consensus       395 ~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~~Gy  474 (524)
                      .+++.+++.+|||+|+|.++.+|+.|++|||.++|.. .++|||+|||||.+.     +.|++|||||||||++||++||
T Consensus       348 ~~~l~~~l~~GPV~v~i~~~~~f~~Yk~GIy~~~C~~-~~nHaV~lVGyG~d~-----~~g~~YWIIkNSWG~~WGe~GY  421 (448)
T PTZ00200        348 KDVLNKSLVISPTVVYIAVSRELLKYKSGVYNGECGK-SLNHAVLLVGEGYDE-----KTKKRYWIIKNSWGTDWGENGY  421 (448)
T ss_pred             HHHHHHHHhcCCEEEEeecccccccCCCCccccccCC-CCcEEEEEEEecccC-----CCCCceEEEEcCCCCCcccCee
Confidence            3455566678999999999889999999999876544 489999999999642     1278999999999999999999


Q ss_pred             EEEEeC---CCccCccccceecccee
Q psy1664         475 FRIVRG---QNECGIEADITAGLPKI  497 (524)
Q Consensus       475 ~~i~~g---~~~cgi~~~~~~~~p~~  497 (524)
                      |||+|+   .|.|||++.+  .+|.+
T Consensus       422 ~ri~r~~~g~n~CGI~~~~--~~P~~  445 (448)
T PTZ00200        422 MRLERTNEGTDKCGILTVG--LTPVF  445 (448)
T ss_pred             EEEEeCCCCCCcCCccccc--eeeEE
Confidence            999995   5899999984  46765

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=99.89  E-value=2.8e-23  Score=200.16  Aligned_cols=94  Identities=39%  Similarity=0.747  Sum_probs=85.6

Q ss_pred             CHHHHHHHHHhCCCEEEEEeccc-ccccccccEEeCCCC-CCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCC
Q psy1664         393 NEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAG-GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWG  470 (524)
Q Consensus       393 ~~~~~~~~~~~~gPv~~~~~~~~-~f~~y~~gi~~~~~~-~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG  470 (524)
                      +.++||++|+++|||+++|.+.+ +|..|++|||..+.+ ...++|+|+|||||++.       +..|||||||||+.||
T Consensus       122 ~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~~~~-------~~~~wiv~NSWG~~WG  194 (219)
T PF00112_consen  122 DIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDCSNESGGHAVLIVGYDDEN-------GKGYWIVKNSWGTDWG  194 (219)
T ss_dssp             CHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSSSSSSEEEEEEEEEEEEET-------TEEEEEEE-SBTTTST
T ss_pred             chhHHHHHHhhCceeeeeeeccccccccccceeeecccccccccccccccccccccc-------ceeeEeeehhhCCccC
Confidence            58999999999999999999988 699999999998744 45789999999999987       8899999999999999


Q ss_pred             CCcEEEEEeCCC-ccCccccceec
Q psy1664         471 ENGLFRIVRGQN-ECGIEADITAG  493 (524)
Q Consensus       471 ~~Gy~~i~~g~~-~cgi~~~~~~~  493 (524)
                      ++|||||.++.+ +|||+++++++
T Consensus       195 ~~Gy~~i~~~~~~~c~i~~~~~~~  218 (219)
T PF00112_consen  195 DNGYFRISYDYNNECGIESQAVYP  218 (219)
T ss_dssp             BTTEEEEESSSSSGGGTTSSEEEE
T ss_pred             CCeEEEEeeCCCCcCccCceeeec
Confidence            999999999987 99999998754

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=99.89  E-value=3.5e-23  Score=227.76  Aligned_cols=125  Identities=23%  Similarity=0.425  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhCCCEEEEEeccccccccc-ccEEeCC-CCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCC
Q psy1664         394 EETIMREIFRHGPVEGSMTIYADMILYK-TGIYKHV-AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE  471 (524)
Q Consensus       394 ~~~~~~~~~~~gPv~~~~~~~~~f~~y~-~gi~~~~-~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~  471 (524)
                      ++.|+.+|+++|||+|+|++. +|+.|. +|||... |+...++|||+|||||.+.+..++  +++|||||||||+.||+
T Consensus       680 i~~IK~eI~~kGPVaV~IdAs-df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~--gk~YWIVRNSWGt~WGE  756 (1004)
T PTZ00462        680 IKIIKDEIMNKGSVIAYIKAE-NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDE--KKSYWIVRNSWGKYWGD  756 (1004)
T ss_pred             HHHHHHHHHhcCCEEEEEEee-hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCC--CCceEEEEcCCCCCcCC
Confidence            468999999999999999985 688885 8986554 444568999999999986421122  67899999999999999


Q ss_pred             CcEEEEEe-CCCccCccccceeccceeccccCCcccccCcc-----cCCCCCCCCCCC
Q psy1664         472 NGLFRIVR-GQNECGIEADITAGLPKIGLEIDSNEINLGKM-----MTLPLTNRDTYT  523 (524)
Q Consensus       472 ~Gy~~i~~-g~~~cgi~~~~~~~~p~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  523 (524)
                      +|||||.| |.|.|||...  ..+|.+..+++-...+..+.     .++++.++|+|.
T Consensus       757 nGYFKI~r~g~n~CGin~i--~t~~~fn~d~~~~~~~~~~~~~~~~~y~~k~spdf~~  812 (1004)
T PTZ00462        757 EGYFKVDMYGPSHCEDNFI--HSVVIFNIDLPKNKKSPKKESFKIYDYYLKASPDFYH  812 (1004)
T ss_pred             CeEEEEEeCCCCCCccchh--eeeeeEeeccccccCCccccccchheeeeccChhHhh
Confidence            99999998 7899999775  44677777776666655443     588999999884

>PTZ00049 cathepsin C-like protein; Provisional

Probab=99.85  E-value=7.8e-22  Score=211.63  Aligned_cols=94  Identities=32%  Similarity=0.577  Sum_probs=78.6

Q ss_pred             CCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcC------CCCC---------------CCCcEEEEEEeccCCCCC
Q psy1664         250 ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHV------AGGP---------------LGEHAIRIIGWGQEPLGE  308 (524)
Q Consensus       250 ~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~------~~~~---------------~~~HaV~iVGyg~~~~~~  308 (524)
                      .++++||++|+.+|||+|+|+++++|++|++|||+.+      .|..               .++|||+|||||.+.   
T Consensus       555 ~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~---  631 (693)
T PTZ00049        555 NGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEE---  631 (693)
T ss_pred             CCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEecccc---
Confidence            3688999999999999999999989999999999864      2421               369999999999762   


Q ss_pred             CCccc--eeEEEEeCCCCCcccccCccccccccCccCCcCcCCc
Q psy1664         309 GTSSV--VKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNG  350 (524)
Q Consensus       309 g~~~g--~~YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~  350 (524)
                        .+|  .+|||||||||++|||+|||||+|+..  .|++...+
T Consensus       632 --enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N--~CGIEs~a  671 (693)
T PTZ00049        632 --INGKLYKYWIGRNSWGKNWGKEGYFKIIRGKN--FSGIESQS  671 (693)
T ss_pred             --CCCcccCEEEEECCCCCCcccCceEEEEcCCC--ccCCccce
Confidence              123  479999999999999999999999865  68876543

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=99.84  E-value=3.1e-21  Score=205.06  Aligned_cols=95  Identities=25%  Similarity=0.471  Sum_probs=79.5

Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcC---------CC----------CCCCCcEEEEEEeccCCCCC
Q psy1664         248 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHV---------AG----------GPLGEHAIRIIGWGQEPLGE  308 (524)
Q Consensus       248 ~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~---------~~----------~~~~~HaV~iVGyg~~~~~~  308 (524)
                      +..++++||++|+++|||+|+|+++.+|+.|++|||...         ++          ...++|||+|||||.++   
T Consensus       339 ~~~~e~~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de---  415 (548)
T PTZ00364        339 AVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDE---  415 (548)
T ss_pred             cCCcHHHHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccC---
Confidence            345688999999999999999999999999999998631         11          13579999999999853   


Q ss_pred             CCccceeEEEEeCCCCC--cccccCccccccccCccCCcCcCCc
Q psy1664         309 GTSSVVKYWLVANSFNT--NWGENGLFRIGCRPYEIPCERYMNG  350 (524)
Q Consensus       309 g~~~g~~YWivkNSWG~--~WGe~Gy~ri~~~~~~~~c~~~~~~  350 (524)
                         ++.+|||||||||+  +|||+|||||+|+.+  .|++.+.+
T Consensus       416 ---~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~N--~CGIes~~  454 (548)
T PTZ00364        416 ---NGGDYWLVLDPWGSRRSWCDGGTRKIARGVN--AYNIESEV  454 (548)
T ss_pred             ---CCceEEEEECCCCCCCCcccCCeEEEEcCCC--ccccccee
Confidence               46899999999999  999999999999865  68876543

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.84  E-value=3.4e-20  Score=192.99  Aligned_cols=213  Identities=17%  Similarity=0.196  Sum_probs=132.4

Q ss_pred             ccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHh----------------hcCC-----------CCCCC
Q psy1664         114 QEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS----------------CCKD-----------CGNGC  166 (524)
Q Consensus       114 tpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvd----------------C~~~-----------~~~gC  166 (524)
                      .||+||++-|.||.||+...|+..+....+. ..+.||+.+|..                +...           ...-.
T Consensus        55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~-~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~  133 (437)
T cd00585          55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNL-KEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQN  133 (437)
T ss_pred             CCcccCCCCchhHHHHCHHHHHHHHHHHcCC-CCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcC
Confidence            4899999999999999999999998876554 369999988765                2110           12356


Q ss_pred             CCCChHHHHHHHHHhCCccCCccCCCCCccccccC-c------cc-c--------cCC----------------------
Q psy1664         167 QGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-C------ER-Y--------MNG----------------------  208 (524)
Q Consensus       167 ~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~-~------~~-~--------~~~----------------------  208 (524)
                      +||.-..+...+++.|+++.+.|+..... ..+.. .      .+ +        ..+                      
T Consensus       134 DGGqw~m~~~li~KYGvVPk~~~pet~~s-~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~  212 (437)
T cd00585         134 DGGQWDMLVNLIEKYGLVPKSVMPESFNS-ENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILA  212 (437)
T ss_pred             CCCchHHHHHHHHHcCCCcccccCCCcCc-cchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999998887421100 00000 0      00 0        000                      


Q ss_pred             -CCCCCC---------------CCCCCCccc-ccc---ccCCCcccccccc----ccce----------------eeeec
Q psy1664         209 -SHSSCQ---------------DNEPNTPEC-IRK---CQPGYDVSYEDDL----NFGR----------------IAYSL  248 (524)
Q Consensus       209 -~~~~C~---------------~~~~~~~~~-~~~---~~~~~~~~~~~~~----~~~~----------------~~~~~  248 (524)
                       .-|..+               ....-+|.- ...   +...-.+.+....    .|.+                ..+++
T Consensus       213 ~~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nv  292 (437)
T cd00585         213 IALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNV  292 (437)
T ss_pred             HHcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEec
Confidence             000000               000011100 000   1110001110000    0110                11222


Q ss_pred             CCCHHHHH----HHHHHcCCeEEEEEecccccccCCceEEcC---------------------CCCCCCCcEEEEEEecc
Q psy1664         249 PANEETIM----REIFRHGPVEGSMTIYADMILYKTGIYKHV---------------------AGGPLGEHAIRIIGWGQ  303 (524)
Q Consensus       249 ~~~~~~ik----~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~---------------------~~~~~~~HaV~iVGyg~  303 (524)
                        ..++++    ++|.+++||.++++|. .|+.|++||++..                     ++.+..+|||+|||||.
T Consensus       293 --p~d~l~~~~~~~L~~g~pV~~g~Dv~-~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~  369 (437)
T cd00585         293 --PMDVLKKAAIAQLKDGEPVWFGCDVG-KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDL  369 (437)
T ss_pred             --CHHHHHHHHHHHHhcCCCEEEEEEcC-hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEe
Confidence              234444    5677889999999996 5789999999653                     34456799999999998


Q ss_pred             CCCCCCCccce-eEEEEeCCCCCcccccCcccccc
Q psy1664         304 EPLGEGTSSVV-KYWLVANSFNTNWGENGLFRIGC  337 (524)
Q Consensus       304 ~~~~~g~~~g~-~YWivkNSWG~~WGe~Gy~ri~~  337 (524)
                      +.      +|+ .||+||||||+.||++|||+|+.
T Consensus       370 D~------~g~p~yw~VkNSWG~~~G~~Gy~~ms~  398 (437)
T cd00585         370 DE------DGKPVKWKVENSWGEKVGKKGYFVMSD  398 (437)
T ss_pred             cC------CCCcceEEEEcccCCCCCCCcceehhH
Confidence            74      344 69999999999999999999984

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>KOG1544|consensus

Probab=99.80  E-value=3.6e-20  Score=178.03  Aligned_cols=98  Identities=43%  Similarity=0.846  Sum_probs=84.0

Q ss_pred             eecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCC--------CCCCcEEEEEEeccCCCCCCCccceeEE
Q psy1664         246 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG--------PLGEHAIRIIGWGQEPLGEGTSSVVKYW  317 (524)
Q Consensus       246 ~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~--------~~~~HaV~iVGyg~~~~~~g~~~g~~YW  317 (524)
                      |++.+++++||++||++|||.+.|.|.++|+.|++|||.+..-.        ..+.|+|.|.|||++....|  ...+||
T Consensus       347 YrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G--~~~KyW  424 (470)
T KOG1544|consen  347 YRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDG--RTLKYW  424 (470)
T ss_pred             eeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCC--CeeEEE
Confidence            56778999999999999999999999999999999999886532        24799999999998753223  557899


Q ss_pred             EEeCCCCCcccccCccccccccCccCCc
Q psy1664         318 LVANSFNTNWGENGLFRIGCRPYEIPCE  345 (524)
Q Consensus       318 ivkNSWG~~WGe~Gy~ri~~~~~~~~c~  345 (524)
                      |..||||+.|||+|||||.++.++.+.+
T Consensus       425 ~aANSWG~~WGE~GYFriLRGvNecdIE  452 (470)
T KOG1544|consen  425 TAANSWGPAWGERGYFRILRGVNECDIE  452 (470)
T ss_pred             EeecccccccccCceEEEeccccchhhh
Confidence            9999999999999999999998854333

>smart00645 Pept_C1 Papain family cysteine protease

Probab=99.79  E-value=1.3e-19  Score=168.49  Aligned_cols=75  Identities=49%  Similarity=0.975  Sum_probs=63.9

Q ss_pred             EEEEecccccccccccEEeCC-CCCCccCeeEEEeeecCC-CCCCCccCCccEEEEEcCCCCCCCCCcEEEEEeCC-Ccc
Q psy1664         408 EGSMTIYADMILYKTGIYKHV-AGGPLGEHAIRIIGWGQE-PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NEC  484 (524)
Q Consensus       408 ~~~~~~~~~f~~y~~gi~~~~-~~~~~~~H~v~ivG~g~~-~~~~~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~g~-~~c  484 (524)
                      ++.+.+. +|+.|++|||+.+ +....++|+|+|||||.+ +       +++|||||||||+.||++|||||.|+. |.|
T Consensus        93 ~~~~~~~-~f~~Y~~Gi~~~~~~~~~~~~Hav~ivGyg~~~~-------g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c  164 (174)
T smart00645       93 SVAIDAS-DFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEEN-------GKDYWIVKNSWGTDWGENGYFRIARGKNNEC  164 (174)
T ss_pred             EEEEEcc-cccCCcCeEECCCCCCCCcccEEEEEEEEeecCC-------CeeEEEEECCCCCCcccCeEEEEEcCCCCcc
Confidence            4555554 6999999999875 433447999999999987 4       789999999999999999999999998 999


Q ss_pred             Cccccc
Q psy1664         485 GIEADI  490 (524)
Q Consensus       485 gi~~~~  490 (524)
                      ||+...
T Consensus       165 ~i~~~~  170 (174)
T smart00645      165 GIEASV  170 (174)
T ss_pred             Cceeee
Confidence            997764

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=99.76  E-value=4e-18  Score=164.56  Aligned_cols=84  Identities=32%  Similarity=0.547  Sum_probs=72.9

Q ss_pred             CHHHHHHHHHhCCCEEEEEecccccccccccEEe------CCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCC
Q psy1664         393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYK------HVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN  466 (524)
Q Consensus       393 ~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~------~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG  466 (524)
                      ++++||++|+++|||+++|.+..+|..|++|++.      ..+....++|||+|||||++..     .+++|||||||||
T Consensus       124 ~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~-----~~~~~~i~~NSwG  198 (223)
T cd02619         124 NIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYV-----EGKGAFIVKNSWG  198 (223)
T ss_pred             hHHHHHHHHHHCCCEEEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeecCCCC-----CCCCEEEEEeCCC
Confidence            4789999999999999999999999999999863      2234456899999999998752     2678999999999


Q ss_pred             CCCCCCcEEEEEeCC
Q psy1664         467 TNWGENGLFRIVRGQ  481 (524)
Q Consensus       467 ~~WG~~Gy~~i~~g~  481 (524)
                      +.||++||+||.++.
T Consensus       199 ~~wg~~Gy~~i~~~~  213 (223)
T cd02619         199 TDWGDNGYGRISYED  213 (223)
T ss_pred             CccccCCEEEEehhh
Confidence            999999999999984

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.46  E-value=9.6e-14  Score=144.95  Aligned_cols=86  Identities=21%  Similarity=0.279  Sum_probs=68.0

Q ss_pred             EEEEcCCCHHHHH----HHHHhCCCEEEEEecccccccccccEEeCC---------------------CCCCccCeeEEE
Q psy1664         386 IAYSLPANEETIM----REIFRHGPVEGSMTIYADMILYKTGIYKHV---------------------AGGPLGEHAIRI  440 (524)
Q Consensus       386 ~~~~~~~~~~~~~----~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~---------------------~~~~~~~H~v~i  440 (524)
                      .+++++.+  +++    ++|...+||.++++|. .|+.|++||+...                     ++....+|||+|
T Consensus       288 ~y~Nvp~d--~l~~~~~~~L~~g~pV~~g~Dv~-~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~i  364 (437)
T cd00585         288 LYLNVPMD--VLKKAAIAQLKDGEPVWFGCDVG-KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVL  364 (437)
T ss_pred             eEEecCHH--HHHHHHHHHHhcCCCEEEEEEcC-hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEE
Confidence            44566543  343    5777888999999996 5789999999653                     233457899999


Q ss_pred             eeecCCCCCCCccCCc-cEEEEEcCCCCCCCCCcEEEEEeC
Q psy1664         441 IGWGQEPLGEGTSSVV-KYWLVANSFNTNWGENGLFRIVRG  480 (524)
Q Consensus       441 vG~g~~~~~~~~~~~~-~ywiv~NSWG~~WG~~Gy~~i~~g  480 (524)
                      ||||.+.+      |. .||+|+||||+.||++||++|+++
T Consensus       365 vGv~~D~~------g~p~yw~VkNSWG~~~G~~Gy~~ms~~  399 (437)
T cd00585         365 TGVDLDED------GKPVKWKVENSWGEKVGKKGYFVMSDD  399 (437)
T ss_pred             EEEEecCC------CCcceEEEEcccCCCCCCCcceehhHH
Confidence            99998652      54 699999999999999999999875

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.45  E-value=8.5e-13  Score=137.95  Aligned_cols=76  Identities=16%  Similarity=0.245  Sum_probs=48.7

Q ss_pred             ccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHH----------------hhcCC-----------CCCCC
Q psy1664         114 QEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV----------------SCCKD-----------CGNGC  166 (524)
Q Consensus       114 tpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lv----------------dC~~~-----------~~~gC  166 (524)
                      .||.||.+-|-||.||+...|+..+..+.+. ..+.||+.+|.                ++...           ...-.
T Consensus        56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l-~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~  134 (438)
T PF03051_consen   56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNL-KDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVS  134 (438)
T ss_dssp             -S--B--BSSTHHHHHHHHHHHHHHHHHCT--SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-
T ss_pred             CCCCCCCCCCCcchhhchHHHHHHHHHHcCC-CceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCC
Confidence            4899999999999999999999999887654 47999998875                22211           01246


Q ss_pred             CCCChHHHHHHHHHhCCccCCccC
Q psy1664         167 QGGFHGKAWKYWVTTGIVSGGTYA  190 (524)
Q Consensus       167 ~GG~~~~a~~~~~~~Gi~~e~~y~  190 (524)
                      +||.-..+...++.+|+++.+.|+
T Consensus       135 DGGqw~~~~nli~KYGvVPk~~mp  158 (438)
T PF03051_consen  135 DGGQWDMVVNLIKKYGVVPKSVMP  158 (438)
T ss_dssp             S-B-HHHHHHHHHHH---BGGGST
T ss_pred             CCCchHHHHHHHHHcCcCcHhhCC
Confidence            799999999999999999999884

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.8e-12  Score=128.76  Aligned_cols=124  Identities=23%  Similarity=0.134  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhCCCEEEEEeccc-ccccccccEEeCCCCCCccCeeEEEeeecCCCCC---CCccCCccEEEEEcCCCCCC
Q psy1664         394 EETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG---EGTSSVVKYWLVANSFNTNW  469 (524)
Q Consensus       394 ~~~~~~~~~~~gPv~~~~~~~~-~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~---~~~~~~~~ywiv~NSWG~~W  469 (524)
                      ...|++++..+|-++.+|.+.. .+..-.-+.|..... ...+|||+||||++.-..   .....|...||||||||++|
T Consensus       224 nG~i~~~~~~yg~~s~~~~id~~~~~~~~~~~~~~~s~-~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~w  302 (372)
T COG4870         224 NGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYVDSG-ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNW  302 (372)
T ss_pred             ccchHHHHhhhccccceeEEecccccccccCCCCCCcc-ccccceEEEEeccccccccccccCCCCCceEEEECcccccc
Confidence            4457888888888776665421 122212233333222 457999999999986321   11222345999999999999


Q ss_pred             CCCcEEEEEeCCCccCccccceeccceeccccCCcccccCcccCCCCCCCCCCCC
Q psy1664         470 GENGLFRIVRGQNECGIEADITAGLPKIGLEIDSNEINLGKMMTLPLTNRDTYTM  524 (524)
Q Consensus       470 G~~Gy~~i~~g~~~cgi~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (524)
                      |++|||||....-.-| +    +.-++ .-++...+.|+++.....|+..++|.|
T Consensus       303 G~~GYfwisY~ya~~g-~----a~~~D-~y~~i~qydpl~wv~~~~y~~~~~w~~  351 (372)
T COG4870         303 GENGYFWISYYYALNG-D----AEALD-FYVYIYQYDPLGWVITSGYGLNTAWMA  351 (372)
T ss_pred             ccCceEEEEeeecccc-c----ccccC-cceEEeeccCcceEeecCcCcchhhhh
Confidence            9999999999743233 1    11111 234456778899998888888777653

>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.28  E-value=1.5e-12  Score=98.31  Aligned_cols=58  Identities=19%  Similarity=0.203  Sum_probs=50.5

Q ss_pred             HHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHHH
Q psy1664           9 VATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSEL   67 (524)
Q Consensus         9 f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~   67 (524)
                      |+.|+++|+|.|.+.++...|+.+|.+|++.|++||+... .+|++++|+|+|||.+||
T Consensus         1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~-~~~~~~~N~fsD~t~eEf   58 (58)
T PF08246_consen    1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGN-NTYKLGLNQFSDMTPEEF   58 (58)
T ss_dssp             HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTS-SSEEE-SSTTTTSSHHHH
T ss_pred             CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC-CCeEEeCccccCcChhhC
Confidence            6899999999999999999999999999999999995543 899999999999999997

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....

>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)

Probab=98.98  E-value=1e-10  Score=87.76  Aligned_cols=57  Identities=18%  Similarity=0.110  Sum_probs=52.6

Q ss_pred             HHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHH
Q psy1664           9 VATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSE   66 (524)
Q Consensus         9 f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE   66 (524)
                      |..|+.+|+|.|.+.++...|+.+|.+|++.|+.||+... .+|++++|+|+|||.+|
T Consensus         1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~-~~~~~~~N~fsDlt~eE   57 (57)
T smart00848        1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKND-HSYTLGLNQFADLTNEE   57 (57)
T ss_pred             ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEecCcccccCCCCC
Confidence            5689999999999999999999999999999999998654 79999999999999876

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.39  E-value=9.3e-07  Score=92.93  Aligned_cols=87  Identities=23%  Similarity=0.286  Sum_probs=57.2

Q ss_pred             EEEEcCCCH--HHHHHHHHhCCCEEEEEecccccccccccEEeCCC---------------------CCCccCeeEEEee
Q psy1664         386 IAYSLPANE--ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA---------------------GGPLGEHAIRIIG  442 (524)
Q Consensus       386 ~~~~~~~~~--~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~---------------------~~~~~~H~v~ivG  442 (524)
                      .+++++.++  ..++++|...-||..+-+|.. +..-+.||.+...                     .....+|||+|||
T Consensus       289 ~ylNvpid~lk~~~i~~Lk~G~~VwfgcDV~k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itG  367 (438)
T PF03051_consen  289 RYLNVPIDELKDAAIKSLKAGYPVWFGCDVGK-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITG  367 (438)
T ss_dssp             EEEE--HHHHHHHHHHHHHTT--EEEEEETTT-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEE
T ss_pred             eEeccCHHHHHHHHHHHHHcCCcEEEeccCCc-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEE
Confidence            346666543  334444544559999999975 5566788875431                     1223689999999


Q ss_pred             ecCCCCCCCccCCc-cEEEEEcCCCCCCCCCcEEEEEe
Q psy1664         443 WGQEPLGEGTSSVV-KYWLVANSFNTNWGENGLFRIVR  479 (524)
Q Consensus       443 ~g~~~~~~~~~~~~-~ywiv~NSWG~~WG~~Gy~~i~~  479 (524)
                      ...+..      |. .+|+|+||||+..|.+||+.++.
T Consensus       368 v~~D~~------g~p~~wkVeNSWG~~~g~kGy~~msd  399 (438)
T PF03051_consen  368 VDLDED------GKPVRWKVENSWGTDNGDKGYFYMSD  399 (438)
T ss_dssp             EEE-TT------SSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred             EEeccC------CCeeEEEEEcCCCCCCCCCcEEEECH
Confidence            998652      55 59999999999999999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=98.30  E-value=3.9e-06  Score=82.61  Aligned_cols=80  Identities=24%  Similarity=0.287  Sum_probs=55.0

Q ss_pred             CHHHHHHHHH----HcCCeEEEEEecccccccCCceEEcCC---------------------CCCCCCcEEEEEEeccCC
Q psy1664         251 NEETIMREIF----RHGPVEGSMTIYADMILYKTGIYKHVA---------------------GGPLGEHAIRIIGWGQEP  305 (524)
Q Consensus       251 ~~~~ik~~l~----~~GPV~v~i~v~~~f~~Y~sGIy~~~~---------------------~~~~~~HaV~iVGyg~~~  305 (524)
                      ..+.++++.+    .+-||=.+-+|. .+..-+.||.+..-                     ..+...|||+|.|.+.++
T Consensus       296 ~me~lkkl~~~q~qagetVwFG~dvg-q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~  374 (444)
T COG3579         296 DMERLKKLAIKQMQAGETVWFGCDVG-QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE  374 (444)
T ss_pred             cHHHHHHHHHHHHhcCCcEEeecCch-hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence            3455555433    345787777763 45566667653210                     112358999999999886


Q ss_pred             CCCCCccceeEEEEeCCCCCcccccCccccc
Q psy1664         306 LGEGTSSVVKYWLVANSFNTNWGENGLFRIG  336 (524)
Q Consensus       306 ~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~  336 (524)
                      .|     ..--|.|.||||.+=|.+|||-++
T Consensus       375 ~g-----~p~rwkVENSWG~d~G~~GyfvaS  400 (444)
T COG3579         375 TG-----NPLRWKVENSWGKDVGKKGYFVAS  400 (444)
T ss_pred             CC-----CceeeEeecccccccCCCceEeeh
Confidence            43     245799999999999999999887

>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A

Probab=97.19  E-value=0.00019  Score=49.52  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=24.6

Q ss_pred             hhhhhhhcCCCCccccccccccccchHHHHHHHhCCCCC
Q psy1664          38 DRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPD   76 (524)
Q Consensus        38 ~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~~~~~~~~   76 (524)
                      ++|+.+|+.+  .+|+||.| |.+++.+.++.++|..+.
T Consensus         4 e~I~~IN~~~--~tWkAG~N-F~~~~~~~ik~LlGv~~~   39 (41)
T PF08127_consen    4 EFIDYINSKN--TTWKAGRN-FENTSIEYIKRLLGVLPD   39 (41)
T ss_dssp             HHHHHHHHCT---SEEE-----SSB-HHHHHHCS-B-TT
T ss_pred             HHHHHHHcCC--CcccCCCC-CCCCCHHHHHHHcCCCCC
Confidence            3499999986  89999999 799999999999998653

Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.

>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.22  E-value=0.041  Score=50.23  Aligned_cols=120  Identities=14%  Similarity=0.105  Sum_probs=72.8

Q ss_pred             CCCCCccHHHHHHHHHHHHHHH--------HHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHHHHHHhCCccCCcc
Q psy1664         118 DQGSCGSGWALGAVEAMSDRVC--------IASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTY  189 (524)
Q Consensus       118 dQg~CGsCwAfA~~~~le~~~~--------i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y  189 (524)
                      .||.=+=|-+||.++.|-....        |...  ..+.+|+++|.+++.         .+...++|.+..|...    
T Consensus        18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~--~yPn~s~~~l~~~~~---------~~~~~i~y~ks~g~~~----   82 (175)
T PF05543_consen   18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRY--LYPNVSEEQLKFTSL---------TPNQMIKYAKSQGRNP----   82 (175)
T ss_dssp             --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHH--HSTTS-CCCHHH--B----------HHHHHHHHHHTTEEE----
T ss_pred             ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHH--HCCCCCHHHHhhcCC---------CHHHHHHHHHHcCcch----
Confidence            3788888999999988765421        1110  246788888877742         4678999988888653    


Q ss_pred             CCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEE
Q psy1664         190 ASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM  269 (524)
Q Consensus       190 ~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i  269 (524)
                             -|..                                               -..+-+++++.+-++.|+.+..
T Consensus        83 -------~~~n-----------------------------------------------~~~s~~eV~~~~~~nk~i~i~~  108 (175)
T PF05543_consen   83 -------QYNN-----------------------------------------------RMPSFDEVKKLIDNNKGIAILA  108 (175)
T ss_dssp             -------EEEC-----------------------------------------------S---HHHHHHHHHTT-EEEEEE
T ss_pred             -------hHhc-----------------------------------------------CCCCHHHHHHHHHcCCCeEEEe
Confidence                   1110                                               0124678999999999998776


Q ss_pred             EecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCC
Q psy1664         270 TIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN  324 (524)
Q Consensus       270 ~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG  324 (524)
                      ...+            .......+||++||||-.-.      +|.++.++=|=|-
T Consensus       109 ~~v~------------~~~~~~~gHAlavvGya~~~------~g~~~y~~WNPW~  145 (175)
T PF05543_consen  109 DRVE------------QTNGPHAGHALAVVGYAKPN------NGQKTYYFWNPWW  145 (175)
T ss_dssp             EETT------------SCTTB--EEEEEEEEEEEET------TSEEEEEEE-TT-
T ss_pred             cccc------------cCCCCccceeEEEEeeeecC------CCCeEEEEeCCcc
Confidence            6421            11234568999999998642      4688999988774

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.

>KOG4128|consensus

Probab=95.35  E-value=0.023  Score=56.42  Aligned_cols=75  Identities=17%  Similarity=0.160  Sum_probs=52.2

Q ss_pred             ccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHh--------------------hcCC---------CCC
Q psy1664         114 QEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS--------------------CCKD---------CGN  164 (524)
Q Consensus       114 tpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvd--------------------C~~~---------~~~  164 (524)
                      .||-+|.+-|-||.|+....|--.+..+-+- ....||..+|+-                    |-..         .+.
T Consensus        63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl-~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP  141 (457)
T KOG4128|consen   63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNL-PEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNP  141 (457)
T ss_pred             cccccCcCCCceEEEechhHHHHHHHhcCCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCC
Confidence            6999999999999999998776555544432 247888877752                    1110         012


Q ss_pred             CCCCCChHHHHHHHHHhCCccCCcc
Q psy1664         165 GCQGGFHGKAWKYWVTTGIVSGGTY  189 (524)
Q Consensus       165 gC~GG~~~~a~~~~~~~Gi~~e~~y  189 (524)
                      .-+||.-..-.+.++..|+.+..-|
T Consensus       142 ~~DGGqw~MfvNlVkKYGviPKkcy  166 (457)
T KOG4128|consen  142 VPDGGQWQMFVNLVKKYGVIPKKCY  166 (457)
T ss_pred             CCCCchHHHHHHHHHHhCCCcHHhc
Confidence            3358888888888888998875555

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=95.28  E-value=0.014  Score=58.16  Aligned_cols=72  Identities=25%  Similarity=0.283  Sum_probs=50.6

Q ss_pred             HHhCCCEEEEEecccccccccccEEeCCC---------------------CCCccCeeEEEeeecCCCCCCCccCCccEE
Q psy1664         401 IFRHGPVEGSMTIYADMILYKTGIYKHVA---------------------GGPLGEHAIRIIGWGQEPLGEGTSSVVKYW  459 (524)
Q Consensus       401 ~~~~gPv~~~~~~~~~f~~y~~gi~~~~~---------------------~~~~~~H~v~ivG~g~~~~~~~~~~~~~yw  459 (524)
                      +...-||-.+-+|.. +..-+.||.+-..                     +.....|||+|.|.+.+..+     ..-=|
T Consensus       308 ~qagetVwFG~dvgq-~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~g-----~p~rw  381 (444)
T COG3579         308 MQAGETVWFGCDVGQ-LSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDETG-----NPLRW  381 (444)
T ss_pred             HhcCCcEEeecCchh-hcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccCC-----Cceee
Confidence            333448888877743 6667777753210                     11236799999999877631     23379


Q ss_pred             EEEcCCCCCCCCCcEEEEE
Q psy1664         460 LVANSFNTNWGENGLFRIV  478 (524)
Q Consensus       460 iv~NSWG~~WG~~Gy~~i~  478 (524)
                      .|.||||..=|.+|||-.+
T Consensus       382 kVENSWG~d~G~~GyfvaS  400 (444)
T COG3579         382 KVENSWGKDVGKKGYFVAS  400 (444)
T ss_pred             EeecccccccCCCceEeeh
Confidence            9999999999999999765

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=94.62  E-value=0.44  Score=41.59  Aligned_cols=57  Identities=28%  Similarity=0.343  Sum_probs=33.5

Q ss_pred             CCHHHHHHHHHHcCCeEEEEEecc-cccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCC
Q psy1664         250 ANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSF  323 (524)
Q Consensus       250 ~~~~~ik~~l~~~GPV~v~i~v~~-~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSW  323 (524)
                      .+.+.|+++|.++.||.+.+...- ..   ....+.    .....|.|+|+||..+         . +++|-.+|
T Consensus        87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~----~~~~~H~vvi~Gy~~~---------~-~~~v~DP~  144 (144)
T PF13529_consen   87 ASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD----GTYGGHYVVIIGYDED---------G-YVYVNDPW  144 (144)
T ss_dssp             S-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE----E-TTEEEEEEEEE-SS---------E--EEEE-TT
T ss_pred             CcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC----CCcCCEEEEEEEEeCC---------C-EEEEeCCC
Confidence            356889999999999999997421 01   111111    1246899999999974         2 77777766

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=82.49  E-value=5.7  Score=34.34  Aligned_cols=60  Identities=27%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             cCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCC
Q psy1664         390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSF  465 (524)
Q Consensus       390 ~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSW  465 (524)
                      ...+..+|+++|.+..||.+.+....  .......+.    .....|.|+|+||..+        +  +++|..+|
T Consensus        85 ~~~~~~~i~~~i~~G~Pvi~~~~~~~--~~~~~~~~~----~~~~~H~vvi~Gy~~~--------~--~~~v~DP~  144 (144)
T PF13529_consen   85 SDASFDDIKQEIDAGRPVIVSVNSGW--RPPNGDGYD----GTYGGHYVVIIGYDED--------G--YVYVNDPW  144 (144)
T ss_dssp             TTS-HHHHHHHHHTT--EEEEEETTS--S--TTEEEE----E-TTEEEEEEEEE-SS--------E---EEEE-TT
T ss_pred             cCCcHHHHHHHHHCCCcEEEEEEccc--ccCCCCCcC----CCcCCEEEEEEEEeCC--------C--EEEEeCCC
Confidence            34567899999998889999987421  000111111    1236899999999763        2  67776666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	524
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		2e-73
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		4e-46
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		6e-73
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		8e-46
1mir_A	322	Rat Procathepsin B Length = 322		7e-73
1mir_A	322	Rat Procathepsin B Length = 322		5e-45
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		7e-73
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		3e-46
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		9e-73
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		4e-46
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		1e-72
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		4e-46
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		1e-71
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		5e-45
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		2e-71
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		6e-45
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		1e-67
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		2e-47
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		2e-67
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		8e-48
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		3e-67
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		6e-39
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		4e-51
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		3e-46
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		2e-47
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		6e-47
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		4e-25
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		9e-47
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		5e-25
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		1e-46
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		6e-25
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		4e-22
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		2e-16
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		1e-19
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		1e-15
1sp4_A	48	Crystal Structure Of Ns-134 In Complex With Bovine		8e-16
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		2e-15
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		2e-10
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		2e-15
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		8e-09
1huc_A	47	The Refined 2.15 Angstroms X-Ray Crystal Structure		4e-15
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		5e-14
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		4e-06
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		3e-13
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		6e-08
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		3e-13
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		7e-07
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		5e-13
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		5e-08
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		6e-13
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		4e-06
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		6e-13
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		6e-06
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		8e-13
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		5e-06
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		1e-12
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		7e-06
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		1e-12
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		7e-07
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		1e-12
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		4e-06
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		1e-12
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		1e-06
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		1e-12
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		3e-06
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		1e-12
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		3e-06
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		1e-12
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		4e-06
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		1e-12
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		3e-06
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		2e-12
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		3e-06
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		2e-12
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		4e-06
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		2e-12
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		4e-05
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		2e-12
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		5e-06
1ef7_A	242	Crystal Structure Of Human Cathepsin X Length = 242		2e-12
1ef7_A	242	Crystal Structure Of Human Cathepsin X Length = 242		8e-07
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		3e-12
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		3e-06
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		3e-12
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		1e-06
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		3e-12
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		3e-06
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		3e-12
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		3e-06
3of8_A	221	Structural Basis For Reversible And Irreversible In		3e-12
3of8_A	221	Structural Basis For Reversible And Irreversible In		4e-06
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		3e-12
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		2e-06
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		4e-12
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		3e-06
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		4e-12
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		3e-06
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		4e-12
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		4e-06
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		4e-12
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		4e-06
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		7e-12
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		1e-06
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		2e-11
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		5e-06
3pnr_A	240	Structure Of Pbicp-C In Complex With Falcipain-2 Le		3e-11
3pnr_A	240	Structure Of Pbicp-C In Complex With Falcipain-2 Le		8e-05
1yvb_A	241	The Plasmodium Falciparum Cysteine Protease Falcipa		5e-11
1yvb_A	241	The Plasmodium Falciparum Cysteine Protease Falcipa		6e-05
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		1e-10
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		5e-04
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		1e-10
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		4e-04
2act_A	220	Crystallographic Refinement Of The Structure Of Act		1e-10
2act_A	220	Crystallographic Refinement Of The Structure Of Act		6e-08
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		2e-10
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		7e-05
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		5e-10
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		6e-10
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		1e-07
1k3b_B	164	Crystal Structure Of Human Dipeptidyl Peptidase I (		9e-10
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		1e-09
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		2e-04
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		2e-09
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		3e-09
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		3e-04
3bpm_A	243	Crystal Structure Of Falcipain-3 With Its Inhibitor		5e-09
3bpm_A	243	Crystal Structure Of Falcipain-3 With Its Inhibitor		6e-04
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		5e-09
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		6e-09
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		5e-07
2cio_A	212	The High Resolution X-Ray Structure Of Papain Compl		7e-09
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		7e-09
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		6e-07
3ima_A	212	Complex Strcuture Of Tarocystatin And Papain Length		9e-09
1xkg_A	312	Crystal Structure Of The Major House Dust Mite Alle		1e-08
1stf_E	212	The Refined 2.4 Angstroms X-Ray Crystal Structure O		1e-08
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		1e-08
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		6e-05
1khp_A	212	Monoclinic Form Of Papain/zlfg-dam Covalent Complex		2e-08
1ppp_A	212	Crystal Structure Of Papain-E64-C Complex. Binding		3e-08
1pip_A	212	Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al		3e-08
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		4e-08
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		3e-05
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		4e-08
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		2e-04
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		5e-08
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		8e-04
1mhw_A	175	Design Of Non-covalent Inhibitors Of Human Cathepsi		5e-08
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		5e-08
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		2e-06
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		5e-08
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		2e-06
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		6e-08
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		8e-08
1icf_A	175	Crystal Structure Of Mhc Class Ii Associated P41 Ii		1e-07
3f5v_A	222	C2 Crystal Form Of Mite Allergen Der P 1 Length = 2		1e-07
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		1e-07
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		2e-04
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		1e-07
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		2e-04
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		2e-07
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		2e-04
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		2e-07
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		2e-04
1meg_A	216	Crystal Structure Of A Caricain D158e Mutant In Com		2e-07
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		2e-07
2as8_A	222	Crystal Structure Of Mature And Fully Active Der P		3e-07
3rvw_A	222	Crystal Structure Of Der P 1 Complexed With Fab 4c1		4e-07
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		5e-07
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		4e-04
1ppo_A	216	Determination Of The Structure Of Papaya Protease O		5e-07
1pci_A	322	Procaricain Length = 322		6e-07
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		1e-06
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		4e-06
3ioq_A	213	Crystal Structure Of The Carica Candamarcensis Cyst		6e-06
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		1e-05
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		3e-05
3u8e_A	222	Crystal Structure Of Cysteine Protease From Bulbs O		6e-05

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score =  273 bits (698), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/255 (51%), Positives = 181/255 (70%), Gaps = 11/255 (4%)
Query: 83  RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
           + P  V  ++ L+ LP  FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +
Sbjct: 51  KPPQRVMFTEDLK-LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 109
Query: 143 RGKRHVRLSSDDLVSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
                V +S++DL++CC   CG+GC GG+  +AW +W   G+VSGG Y S  GCRPY IP
Sbjct: 110 NAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIP 169
Query: 202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
            CE ++NGS   C   E +TP+C + C+PGY  +Y+ D ++G  +YS+  +E+ IM EI+
Sbjct: 170 PCEHHVNGSRPPCT-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIY 228
Query: 261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
           ++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLVA
Sbjct: 229 KNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVA 281
Query: 321 NSFNTNWGENGLFRI 335
           NS+NT+WG+NG F+I
Sbjct: 282 NSWNTDWGDNGFFKI 296

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score =  182 bits (462), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 123/164 (75%), Gaps = 9/164 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
            +GCRPY IP CE ++NGSR  C   E +TP+C + C+PGY  +Y+ D ++G  +YS+  
Sbjct: 160 HVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN 218
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
           +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT
Sbjct: 219 SEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT 275
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
                YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 276 ----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 315

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score =  271 bits (693), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 128/242 (52%), Positives = 175/242 (72%), Gaps = 10/242 (4%)
Query: 96  ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDL 155
           +LP  FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +     V +S++DL
Sbjct: 6   KLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDL 65
Query: 156 VSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSC 213
           ++CC   CG+GC GG+  +AW +W   G+VSGG Y S  GCRPY IP CE ++NG+   C
Sbjct: 66  LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA 273
              E +TP+C + C+PGY  +Y+ D ++G  +YS+  +E+ IM EI+++GPVEG+ ++Y+
Sbjct: 126 T-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS 184
Query: 274 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
           D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLVANS+NT+WG+NG F
Sbjct: 185 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANSWNTDWGDNGFF 237
Query: 334 RI 335
           +I
Sbjct: 238 KI 239

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score =  181 bits (459), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 126/169 (74%), Gaps = 11/169 (6%)
Query: 331 GLF--RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIA 387
           GL+   +GCRPY IP CE ++NG+R  C   E +TP+C + C+PGY  +Y+ D ++G  +
Sbjct: 98  GLYESHVGCRPYSIPPCEAHVNGARPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNS 156
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           YS+  +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E 
Sbjct: 157 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE- 215
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
              GT     YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 216 --NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 258

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score =  271 bits (693), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 130/255 (50%), Positives = 179/255 (70%), Gaps = 11/255 (4%)
Query: 83  RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIAS 142
           +LP  V  S+ +  LPE FDAR  W  CPTI +IRDQGSCGS WA GAVEAMSDR+CI +
Sbjct: 50  KLPERVGFSEDIN-LPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHT 108
Query: 143 RGKRHVRLSSDDLVSCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP 201
            G+ +V +S++DL++CC   CG+GC GG+   AW +W   G+VSGG Y S  GC PY IP
Sbjct: 109 NGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIP 168
Query: 202 -CERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF 260
            CE ++NG+   C   E +TP+C + C+ GY  SY++D ++G  +YS+  +E+ IM EI+
Sbjct: 169 PCEHHVNGARPPCT-GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIY 227
Query: 261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA 320
           ++GPVEG+ T+++D + YK+G+YKH AG  +G HAIRI+GWG E       + V YWLVA
Sbjct: 228 KNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGVPYWLVA 280
Query: 321 NSFNTNWGENGLFRI 335
           NS+N +WG+NG F+I
Sbjct: 281 NSWNADWGDNGFFKI 295

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score =  179 bits (453), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 120/164 (73%), Gaps = 9/164 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
            IGC PY IP CE ++NG+R  C   E +TP+C + C+ GY  SY++D ++G  +YS+  
Sbjct: 159 HIGCLPYTIPPCEHHVNGARPPCTG-EGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSD 217
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
           +E+ IM EI+++GPVEG+ T+++D + YK+G+YKH AG  +G HAIRI+GWG E      
Sbjct: 218 SEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE------ 271
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
            + V YWLVANS+N +WG+NG F+I+RG+N CGIE++I AG+P+
Sbjct: 272 -NGVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIVAGIPR 314

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score =  271 bits (693), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 129/242 (53%), Positives = 175/242 (72%), Gaps = 10/242 (4%)
Query: 96  ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDL 155
           +LP  FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +     V +S++DL
Sbjct: 2   KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 61
Query: 156 VSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSC 213
           ++CC   CG+GC GG+  +AW +W   G+VSGG Y S  GCRPY IP CE ++NGS   C
Sbjct: 62  LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA 273
              E +TP+C + C+PGY  +Y+ D ++G  +YS+  +E+ IM EI+++GPVEG+ ++Y+
Sbjct: 122 T-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS 180
Query: 274 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
           D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLVANS+NT+WG+NG F
Sbjct: 181 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANSWNTDWGDNGFF 233
Query: 334 RI 335
           +I
Sbjct: 234 KI 235

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score =  182 bits (463), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 126/169 (74%), Gaps = 11/169 (6%)
Query: 331 GLF--RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIA 387
           GL+   +GCRPY IP CE ++NGSR  C   E +TP+C + C+PGY  +Y+ D ++G  +
Sbjct: 94  GLYESHVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNS 152
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           YS+  +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E 
Sbjct: 153 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE- 211
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
              GT     YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 212 --NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 254

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score =  271 bits (692), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 129/242 (53%), Positives = 175/242 (72%), Gaps = 10/242 (4%)
Query: 96  ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDL 155
           +LP  FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +     V +S++DL
Sbjct: 1   KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 60
Query: 156 VSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSC 213
           ++CC   CG+GC GG+  +AW +W   G+VSGG Y S  GCRPY IP CE ++NGS   C
Sbjct: 61  LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA 273
              E +TP+C + C+PGY  +Y+ D ++G  +YS+  +E+ IM EI+++GPVEG+ ++Y+
Sbjct: 121 T-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS 179
Query: 274 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
           D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLVANS+NT+WG+NG F
Sbjct: 180 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANSWNTDWGDNGFF 232
Query: 334 RI 335
           +I
Sbjct: 233 KI 234

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score =  182 bits (462), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 126/169 (74%), Gaps = 11/169 (6%)
Query: 331 GLF--RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIA 387
           GL+   +GCRPY IP CE ++NGSR  C   E +TP+C + C+PGY  +Y+ D ++G  +
Sbjct: 93  GLYESHVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNS 151
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           YS+  +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E 
Sbjct: 152 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE- 210
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
              GT     YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 211 --NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 253

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score =  270 bits (691), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/241 (53%), Positives = 174/241 (72%), Gaps = 10/241 (4%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LP  FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +     V +S++DL+
Sbjct: 1   LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 157 SCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
           +CC   CG+GC GG+  +AW +W   G+VSGG Y S  GCRPY IP CE ++NGS   C 
Sbjct: 61  TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
             E +TP+C + C+PGY  +Y+ D ++G  +YS+  +E+ IM EI+++GPVEG+ ++Y+D
Sbjct: 121 -GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 179
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
            +LYK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLVANS+NT+WG+NG F+
Sbjct: 180 FLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANSWNTDWGDNGFFK 232
Query: 335 I 335
           I
Sbjct: 233 I 233

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score =  182 bits (462), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 126/169 (74%), Gaps = 11/169 (6%)
Query: 331 GLF--RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIA 387
           GL+   +GCRPY IP CE ++NGSR  C   E +TP+C + C+PGY  +Y+ D ++G  +
Sbjct: 92  GLYESHVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNS 150
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           YS+  +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E 
Sbjct: 151 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE- 209
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
              GT     YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 210 --NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 252

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score =  267 bits (682), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/241 (52%), Positives = 172/241 (71%), Gaps = 10/241 (4%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE FDAR  W  CPTI +IRDQGSCGS WA GAVEAMSDR+CI + G+ +V +S++DL+
Sbjct: 7   LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 157 SCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
           +CC   CG+GC GG+   AW +W   G+VSGG Y S  GC PY IP CE ++NG+   C 
Sbjct: 67  TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 126
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
             E +TP+C + C+ GY  SY++D ++G  +YS+  +E+ IM EI+++GPVEG+ T+++D
Sbjct: 127 -GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD 185
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
            + YK+G+YKH AG  +G HAIRI+GWG E       + V YWLVANS+N +WG+NG F+
Sbjct: 186 FLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGVPYWLVANSWNADWGDNGFFK 238
Query: 335 I 335
           I
Sbjct: 239 I 239

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score =  179 bits (453), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 120/164 (73%), Gaps = 9/164 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
            IGC PY IP CE ++NG+R  C   E +TP+C + C+ GY  SY++D ++G  +YS+  
Sbjct: 103 HIGCLPYTIPPCEHHVNGARPPCTG-EGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSD 161
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
           +E+ IM EI+++GPVEG+ T+++D + YK+G+YKH AG  +G HAIRI+GWG E      
Sbjct: 162 SEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE------ 215
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
            + V YWLVANS+N +WG+NG F+I+RG+N CGIE++I AG+P+
Sbjct: 216 -NGVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIVAGIPR 258

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score =  266 bits (680), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/241 (52%), Positives = 172/241 (71%), Gaps = 10/241 (4%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE FDAR  W  CPTI +IRDQGSCGS WA GAVEAMSDR+CI + G+ +V +S++DL+
Sbjct: 1   LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 157 SCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
           +CC   CG+GC GG+   AW +W   G+VSGG Y S  GC PY IP CE ++NG+   C 
Sbjct: 61  TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
             E +TP+C + C+ GY  SY++D ++G  +YS+  +E+ IM EI+++GPVEG+ T+++D
Sbjct: 121 -GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD 179
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
            + YK+G+YKH AG  +G HAIRI+GWG E       + V YWLVANS+N +WG+NG F+
Sbjct: 180 FLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGVPYWLVANSWNADWGDNGFFK 232
Query: 335 I 335
           I
Sbjct: 233 I 233

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score =  178 bits (452), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 120/164 (73%), Gaps = 9/164 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
            IGC PY IP CE ++NG+R  C   E +TP+C + C+ GY  SY++D ++G  +YS+  
Sbjct: 97  HIGCLPYTIPPCEHHVNGARPPCTG-EGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSD 155
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
           +E+ IM EI+++GPVEG+ T+++D + YK+G+YKH AG  +G HAIRI+GWG E      
Sbjct: 156 SEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE------ 209
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
            + V YWLVANS+N +WG+NG F+I+RG+N CGIE++I AG+P+
Sbjct: 210 -NGVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIVAGIPR 252

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score =  254 bits (648), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/241 (53%), Positives = 172/241 (71%), Gaps = 10/241 (4%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI S G+ +V +S++D++
Sbjct: 1   LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 157 SCCKDCGNGCQGG-FHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
           +CC         G F   AW +W   G+VSGG Y S  GCRPY IP CE ++NGS   C 
Sbjct: 61  TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
             E +TP+C + C+PGY  SY++D +FG  +YS+  NE+ IM EI+++GPVEG+ ++Y+D
Sbjct: 121 -GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSD 179
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
            +LYK+G+Y+HV+G  +G HAIRI+GWG E    GT     YWLV NS+NT+WG+NG F+
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGVE---NGT----PYWLVGNSWNTDWGDNGFFK 232
Query: 335 I 335
           I
Sbjct: 233 I 233

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/163 (53%), Positives = 123/163 (75%), Gaps = 9/163 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
            +GCRPY IP CE ++NGSR  C   E +TP+C + C+PGY  SY++D +FG  +YS+  
Sbjct: 97  HVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVAN 155
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
           NE+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV+G  +G HAIRI+GWG E    GT
Sbjct: 156 NEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE---NGT 212
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
                YWLV NS+NT+WG+NG F+I+RGQ+ CGIE++I AG+P
Sbjct: 213 ----PYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 251

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score =  253 bits (646), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/241 (53%), Positives = 172/241 (71%), Gaps = 10/241 (4%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI S G+ +V +S++D++
Sbjct: 1   LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 157 SCCKDCGNGCQGGFH-GKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
           +CC         G     AW +W   G+VSGG Y S  GCRPY IP CE ++NGS   C 
Sbjct: 61  TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
             E +TP+C + C+PGY  SY++D +FG  +YS+  NE+ IM EI+++GPVEG+ ++Y+D
Sbjct: 121 -GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSD 179
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
            +LYK+G+Y+HV+G  +G HAIRI+GWG E    GT     YWLVANS+NT+WG+NG F+
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGVE---NGT----PYWLVANSWNTDWGDNGFFK 232
Query: 335 I 335
           I
Sbjct: 233 I 233

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score =  187 bits (476), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 127/168 (75%), Gaps = 11/168 (6%)
Query: 331 GLF--RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIA 387
           GL+   +GCRPY IP CE ++NGSR  C   E +TP+C + C+PGY  SY++D +FG  +
Sbjct: 92  GLYNSHVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKTCEPGYSPSYKEDKHFGCSS 150
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           YS+  NE+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV+G  +G HAIRI+GWG E 
Sbjct: 151 YSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE- 209
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
              GT     YWLVANS+NT+WG+NG F+I+RGQ+ CGIE++I AG+P
Sbjct: 210 --NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 251

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score =  252 bits (644), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/241 (50%), Positives = 154/241 (63%), Gaps = 8/241 (3%)
Query: 96  ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDL 155
           E+P  FD+R  WP C +I  IRDQ  CGS WA GAVEAMSDR CI S GK++V LS+ DL
Sbjct: 2   EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 156 VSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
           +SCC+ CG GC+GG  G AW YWV  GIV+G +  +  GC PY  P CE +  G +  C 
Sbjct: 62  LSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCG 121
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
                TP C + CQ  Y   Y  D + G+ +Y++  +E+ I +EI ++GPVE   T+Y D
Sbjct: 122 SKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYED 181
Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
            + YK+GIYKH+ G  LG HAIRIIGWG E       +   YWL+ANS+N +WGENG FR
Sbjct: 182 FLNYKSGIYKHITGETLGGHAIRIIGWGVE-------NKAPYWLIANSWNEDWGENGYFR 234
Query: 335 I 335
           I
Sbjct: 235 I 235

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score =  158 bits (400), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 107/179 (59%), Gaps = 11/179 (6%)
Query: 316 YWLVANSFNTNWGENGLFRIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYD 374
           YW+       +  EN     GC PY  P CE +  G    C +    TP C + CQ  Y 
Sbjct: 83  YWVKEGIVTGSSKEN---HAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYK 139
Query: 375 VSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLG 434
             Y  D + G+ +Y++  +E+ I +EI ++GPVE   T+Y D + YK+GIYKH+ G  LG
Sbjct: 140 TPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLG 199
Query: 435 EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAG 493
            HAIRIIGWG E       +   YWL+ANS+N +WGENG FRIVRG++EC IE+++TAG
Sbjct: 200 GHAIRIIGWGVE-------NKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTAG 251

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score =  199 bits (506), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 136/190 (71%), Gaps = 10/190 (5%)
Query: 148 VRLSSDDLVSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERY 205
           V +S++DL++CC   CG+GC GG+  +AW +W   G+VSGG Y S  GCRPY IP CE +
Sbjct: 3   VEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHH 62
Query: 206 MNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPV 265
           +NGS   C   E +TP+C + C+PGY  +Y+ D ++G  +YS+  +E+ IM EI+++GPV
Sbjct: 63  VNGSRPPCT-GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPV 121
Query: 266 EGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT 325
           EG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLVANS+NT
Sbjct: 122 EGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANSWNT 174
Query: 326 NWGENGLFRI 335
           +WG+NG F+I
Sbjct: 175 DWGDNGFFKI 184

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score =  182 bits (463), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 123/164 (75%), Gaps = 9/164 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
            +GCRPY IP CE ++NGSR  C   E +TP+C + C+PGY  +Y+ D ++G  +YS+  
Sbjct: 48  HVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN 106
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
           +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT
Sbjct: 107 SEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT 163
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
                YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 164 ----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 203

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/163 (53%), Positives = 123/163 (75%), Gaps = 9/163 (5%)
Query: 334 RIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
            +GCRPY IP CE ++NGSR  C   E +TP+C + C+PGY  SY++D +FG  +YS+  
Sbjct: 49  HVGCRPYSIPPCEHHVNGSRPPCTG-EGDTPKCNKTCEPGYSPSYKEDKHFGCSSYSVAN 107
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
           NE+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV+G  +G HAIRI+GWG E    GT
Sbjct: 108 NEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE---NGT 164
Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
                YWLV NS+NT+WG+NG F+I+RGQ+ CGIE++I AG+P
Sbjct: 165 ----PYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 203

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score =  185 bits (469), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 159/311 (51%), Gaps = 34/311 (10%)
Query: 33  LSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGV----HPDSKLPQNRLPLLV 88
           LSKAF  VD    L +  +       +  +TL E +   GV    +  S LP+ R     
Sbjct: 10  LSKAF--VDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRF---- 63
Query: 89  QLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHV 148
              +    LP  FD+   WP CPTI +I DQ +CGS WA+ A  AMSDR C    G + V
Sbjct: 64  TEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMG-GVQDV 122
Query: 149 RLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMN 207
            +S+ DL++CC DCG+GC GG   +AW Y+ +TG+VS         C+PY  P C  +  
Sbjct: 123 HISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSK 175
Query: 208 GS--HSSCQDNEPNTPECIRKCQ-PGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGP 264
               +  C     +TP+C   C  P   V     +N+          E+  MRE+F  GP
Sbjct: 176 SKNGYPPCSQFNFDTPKCDYTCDDPTIPV-----VNYRSWTSYALQGEDDYMRELFFRGP 230
Query: 265 VEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN 324
            E +  +Y D I Y +G+Y HV+G  LG HA+R++GW       GTS+ V YW +ANS+N
Sbjct: 231 FEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW-------GTSNGVPYWKIANSWN 283
Query: 325 TNWGENGLFRI 335
           T WG +G F I
Sbjct: 284 TEWGMDGYFLI 294

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 91/169 (53%), Gaps = 16/169 (9%)
Query: 331 GLFRIGCRPYEIPCERYMNGSRSS---CQANEPNTPECIRKCQ-PGYDVSYEDDLNFGRI 386
           GL    C+PY  P   + + S++    C     +TP+C   C  P   V     +N+   
Sbjct: 156 GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPV-----VNYRSW 210
Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
                  E+  MRE+F  GP E +  +Y D I Y +G+Y HV+G  LG HA+R++GW   
Sbjct: 211 TSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW--- 267
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
               GTS+ V YW +ANS+NT WG +G F I RG +ECGIE   +AG+P
Sbjct: 268 ----GTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIP 312

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score =  184 bits (468), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 159/311 (51%), Gaps = 34/311 (10%)
Query: 33  LSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGV----HPDSKLPQNRLPLLV 88
           LSKAF  VD    L +  +       +  +TL E +   GV    +  S LP+ R     
Sbjct: 9   LSKAF--VDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRF---- 62
Query: 89  QLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHV 148
              +    LP  FD+   WP CPTI +I DQ +CGS WA+ A  AMSDR C    G + V
Sbjct: 63  TEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMG-GVQDV 121
Query: 149 RLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMN 207
            +S+ DL++CC DCG+GC GG   +AW Y+ +TG+VS         C+PY  P C  +  
Sbjct: 122 HISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSK 174
Query: 208 GS--HSSCQDNEPNTPECIRKCQ-PGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGP 264
               +  C     +TP+C   C  P   V     +N+          E+  MRE+F  GP
Sbjct: 175 SKNGYPPCSQFNFDTPKCNYTCDDPTIPV-----VNYRSWTSYALQGEDDYMRELFFRGP 229
Query: 265 VEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN 324
            E +  +Y D I Y +G+Y HV+G  LG HA+R++GW       GTS+ V YW +ANS+N
Sbjct: 230 FEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW-------GTSNGVPYWKIANSWN 282
Query: 325 TNWGENGLFRI 335
           T WG +G F I
Sbjct: 283 TEWGMDGYFLI 293

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 91/169 (53%), Gaps = 16/169 (9%)
Query: 331 GLFRIGCRPYEIPCERYMNGSRSS---CQANEPNTPECIRKCQ-PGYDVSYEDDLNFGRI 386
           GL    C+PY  P   + + S++    C     +TP+C   C  P   V     +N+   
Sbjct: 155 GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPV-----VNYRSW 209
Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
                  E+  MRE+F  GP E +  +Y D I Y +G+Y HV+G  LG HA+R++GW   
Sbjct: 210 TSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW--- 266
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
               GTS+ V YW +ANS+NT WG +G F I RG +ECGIE   +AG+P
Sbjct: 267 ----GTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIP 311

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 159/311 (51%), Gaps = 34/311 (10%)
Query: 33  LSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGV----HPDSKLPQNRLPLLV 88
           LSKAF  VD    L +  +       +  +TL E +   GV    +  S LP+ R     
Sbjct: 32  LSKAF--VDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRF---- 85
Query: 89  QLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHV 148
              +    LP  FD+   WP CPTI +I DQ +CGS WA+ A  AMSDR C    G + V
Sbjct: 86  TEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMG-GVQDV 144
Query: 149 RLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMN 207
            +S+ DL++CC DCG+GC GG   +AW Y+ +TG+VS         C+PY  P C  +  
Sbjct: 145 HISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSK 197
Query: 208 GS--HSSCQDNEPNTPECIRKCQ-PGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGP 264
               +  C     +TP+C   C  P   V     +N+          E+  MRE+F  GP
Sbjct: 198 SKNGYPPCSQFNFDTPKCNYTCDDPTIPV-----VNYRSWTSYALQGEDDYMRELFFRGP 252
Query: 265 VEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN 324
            E +  +Y D I Y +G+Y HV+G  LG HA+R++GW       GTS+ V YW +ANS+N
Sbjct: 253 FEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW-------GTSNGVPYWKIANSWN 305
Query: 325 TNWGENGLFRI 335
           T WG +G F I
Sbjct: 306 TEWGMDGYFLI 316

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 91/169 (53%), Gaps = 16/169 (9%)
Query: 331 GLFRIGCRPYEIPCERYMNGSRSS---CQANEPNTPECIRKCQ-PGYDVSYEDDLNFGRI 386
           GL    C+PY  P   + + S++    C     +TP+C   C  P   V     +N+   
Sbjct: 178 GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPV-----VNYRSW 232
Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
                  E+  MRE+F  GP E +  +Y D I Y +G+Y HV+G  LG HA+R++GW   
Sbjct: 233 TSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW--- 289
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
               GTS+ V YW +ANS+NT WG +G F I RG +ECGIE   +AG+P
Sbjct: 290 ----GTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIP 334

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 52/286 (18%)
Query: 62  LTLSELEMRMGVHPDSKLPQNR-LPLLVQLSDPLEELPEGFDAR----INWPYCPTIQEI 116
           LTL ++  R G H   K+P+ +  PL  ++   +  LP  +D R    IN+     +  +
Sbjct: 172 LTLGDMIRRSGGH-SRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVHGINF-----VSPV 225
Query: 117 RDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGF-HGKAW 175
           R+Q SCGS ++  ++  +  R+ I +   +   LS  ++VSC +    GC+GGF +  A 
Sbjct: 226 RNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ-YAQGCEGGFPYLIAG 284
Query: 176 KYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSY 235
           KY    G+V       ++ C PY         G+ S C+  E    +C R         Y
Sbjct: 285 KYAQDFGLV-------EEACFPY--------TGTDSPCKMKE----DCFRY--------Y 317
Query: 236 EDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA------GG 289
             + ++    Y    NE  +  E+  HGP+  +  +Y D + YK GIY H          
Sbjct: 318 SSEYHYVGGFYG-GCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPF 376
Query: 290 PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            L  HA+ ++G+G +     ++S + YW+V NS+ T WGENG FRI
Sbjct: 377 ELTNHAVLLVGYGTD-----SASGMDYWIVKNSWGTGWGENGYFRI 417

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 35/190 (18%)
Query: 317 WLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVS 376
           +L+A  +  ++G   L    C PY         G+ S C+  E    +C R         
Sbjct: 280 YLIAGKYAQDFG---LVEEACFPY--------TGTDSPCKMKE----DCFRY-------- 316
Query: 377 YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA------G 430
           Y  + ++    Y    NE  +  E+  HGP+  +  +Y D + YK GIY H         
Sbjct: 317 YSSEYHYVGGFYG-GCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNP 375
Query: 431 GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADI 490
             L  HA+ ++G+G +     ++S + YW+V NS+ T WGENG FRI RG +EC IE+  
Sbjct: 376 FELTNHAVLLVGYGTD-----SASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIA 430
Query: 491 TAGLPKIGLE 500
            A  P   LE
Sbjct: 431 VAATPIPKLE 440

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 130/286 (45%), Gaps = 51/286 (17%)
Query: 61  KLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDAR----INWPYCPTIQEI 116
           KL++ +L  R G H    L     P+  ++   +  LPE +D R    IN+     +  +
Sbjct: 171 KLSIRDLIRRSG-HSGRILRPKPAPITDEIQQQILSLPESWDWRNVRGINF-----VSPV 224
Query: 117 RDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGF-HGKAW 175
           R+Q SCGS ++  ++  +  R+ I +   +   LS  ++VSC      GC GGF +  A 
Sbjct: 225 RNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSC-SPYAQGCDGGFPYLIAG 283
Query: 176 KYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSY 235
           KY    G+V       ++ C PY          + + C+  E     C+R         Y
Sbjct: 284 KYAQDFGVV-------EENCFPY--------TATDAPCKPKE----NCLR---------Y 315
Query: 236 EDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG------ 289
                +    +    NE  +  E+ +HGP+  +  ++ D + Y +GIY H          
Sbjct: 316 YSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPF 375
Query: 290 PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            L  HA+ ++G+G++P+     + + YW+V NS+ + WGE+G FRI
Sbjct: 376 ELTNHAVLLVGYGKDPV-----TGLDYWIVKNSWGSQWGESGYFRI 416

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 11/109 (10%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG------PLGEHAIRIIGWGQE 446
           NE  +  E+ +HGP+  +  ++ D + Y +GIY H           L  HA+ ++G+G++
Sbjct: 331 NEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKD 390
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
           P+     + + YW+V NS+ + WGE+G FRI RG +EC IE+   A +P
Sbjct: 391 PV-----TGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAIP 434

>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 48

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 40/48 (83%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRG 144
           LPE FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI S G
Sbjct: 1   LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNG 48

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 105/246 (42%), Gaps = 56/246 (22%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFH 171
           +  +++QGSCGS W      A+   V IA+   + + L+   LV C ++  N GCQGG  
Sbjct: 14  VSPVKNQGSCGSCWTFSTTGALESAVAIAT--GKMLSLAEQQLVDCAQNFNNHGCQGGLP 71
Query: 172 GKAWKYW-VTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPG 230
            +A++Y     GI+   TY       PY+        G    C            K QP 
Sbjct: 72  SQAFEYIRYNKGIMGEDTY-------PYK--------GQDDHC------------KFQPD 104
Query: 231 YDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGP 290
             +++  D     +A     +EE ++  +  + PV  +  +  D ++Y+ GIY   +   
Sbjct: 105 KAIAFVKD-----VANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHK 159
Query: 291 LGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI----------GC 337
             +   HA+  +G+G+E       + + YW+V NS+   WG NG F I           C
Sbjct: 160 TPDKVNHAVLAVGYGEE-------NGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAAC 212
Query: 338 RPYEIP 343
             Y IP
Sbjct: 213 ASYPIP 218

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKH 427
           K QP   +++  D     +A     +EE ++  +  + PV  +  +  D ++Y+ GIY  
Sbjct: 100 KFQPDKAIAFVKD-----VANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSS 154
Query: 428 VAGGPLGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNEC 484
            +     +   HA+  +G+G+E       + + YW+V NS+   WG NG F I RG+N C
Sbjct: 155 TSCHKTPDKVNHAVLAVGYGEE-------NGIPYWIVKNSWGPQWGMNGYFLIERGKNMC 207
Query: 485 GIEADITAGLPKI 497
           G+ A  +  +P +
Sbjct: 208 GLAACASYPIPLV 220

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 117/295 (39%), Gaps = 58/295 (19%)
Query: 55  EKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEG--FDA-------RI 105
           E N    L L    + +    D    + +   L ++S   + L  G  ++A       +I
Sbjct: 37  EHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAVPDKI 96
Query: 106 NWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCG-N 164
           +W     + E++DQG+CGSGWA      M  +     R    +  S   LV C +  G N
Sbjct: 97  DWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTS--ISFSEQQLVDCSRPWGNN 154
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECI 224
           GC GG    A++Y    G+ +  +Y       PY              C+          
Sbjct: 155 GCGGGLMENAYQYLKQFGLETESSY-------PY--------TAVEGQCR---------- 189
Query: 225 RKCQPGYDVSYEDDLNFGRIA--YSLPANEETIMREIF-RHGPVEGSMTIYADMILYKTG 281
                     Y   L   ++   Y++ +  E  ++ +    GP   ++ + +D ++Y++G
Sbjct: 190 ----------YNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSG 239
Query: 282 IYKHVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           IY+     PL   HA+  +G+       GT     YW+V NS+  +WGE G  R+
Sbjct: 240 IYQSQTCSPLRVNHAVLAVGY-------GTQGGTDYWIVKNSWGLSWGERGYIRM 287

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 377 YEDDLNFGRIA--YSLPANEETIMREIF-RHGPVEGSMTIYADMILYKTGIYKHVAGGPL 433
           Y   L   ++   Y++ +  E  ++ +    GP   ++ + +D ++Y++GIY+     PL
Sbjct: 190 YNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQSQTCSPL 249
Query: 434 G-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEADIT 491
              HA+  +G+G       T     YW+V NS+  +WGE G  R+VR + N CGI +   
Sbjct: 250 RVNHAVLAVGYG-------TQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIAS--L 300
Query: 492 AGLPKI 497
           A LP +
Sbjct: 301 ASLPMV 306

>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 47

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/44 (77%), Positives = 37/44 (84%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCI 140
           LP  FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI
Sbjct: 1   LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI 44

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 124/286 (43%), Gaps = 56/286 (19%)
Query: 57  NALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEI 116
           N L  +T  E+   M +    ++P      +   S+P   LP+  D    W     + E+
Sbjct: 62  NHLGDMTSEEV---MSLMSSLRVPSQWQRNITYKSNPNRILPDSVD----WREKGCVTEV 114
Query: 117 RDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CGN-GCQGGFHGKA 174
           + QGSCG+ WA  AV A+  ++ + + GK  V LS+ +LV C  +  GN GC GGF   A
Sbjct: 115 KYQGSCGAAWAFSAVGALEAQLKLKT-GKL-VSLSAQNLVDCSTEKYGNKGCNGGFMTTA 172
Query: 175 WKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNTPECIRKCQPGYD 232
           ++Y +   GI S  +Y       PY+   ++        CQ D++     C +  +    
Sbjct: 173 FQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRAATCSKYTE---- 213
Query: 233 VSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGP 290
                          LP   E +++E +   GPV  G    +    LY++G+Y   +   
Sbjct: 214 ---------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ 258
Query: 291 LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIG 336
              H + ++G+G     E       YWLV NS+  N+GE G  R+ 
Sbjct: 259 NVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRMA 297

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           LP   E +++E +   GPV  G    +    LY++G+Y   +      H + ++G+G   
Sbjct: 214 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 273
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
             E       YWLV NS+  N+GE G  R+ R + N CGI +
Sbjct: 274 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 308

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 102/234 (43%), Gaps = 39/234 (16%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++Q  CGS WA  A  A+  +  +  +  + V LS  +LV C +  GN
Sbjct: 5   VDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQ--MFRKTGKLVSLSEQNLVDCSRPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GGF  +A++Y     +   G   S++   PY    E                    
Sbjct: 63  QGCNGGFMARAFQY-----VKENGGLDSEE-SYPYVAVDE-------------------- 96
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
           I K +P  + S   D  F  +A   P  E+ +M+ +   GP+  +M   ++    YK+GI
Sbjct: 97  ICKYRP--ENSVAQDTGFTVVA---PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGI 151
Query: 283 YKHVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           Y          +H + ++G+G E      S   KYWLV NS+   WG NG  +I
Sbjct: 152 YFEPDCSSKNLDHGVLVVGYGFEGANSDNS---KYWLVKNSWGPEWGSNGYVKI 202

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 376 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLG 434
           S   D  F  +A   P  E+ +M+ +   GP+  +M   ++    YK+GIY         
Sbjct: 105 SVAQDTGFTVVA---PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKN 161
Query: 435 -EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
            +H + ++G+G E      S   KYWLV NS+   WG NG  +I + + N CGI
Sbjct: 162 LDHGVLVVGYGFEGANSDNS---KYWLVKNSWGPEWGSNGYVKIAKDKNNHCGI 212

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 47/236 (19%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSC-CKDCG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ +  +  + V LS+ +LV C  K  G
Sbjct: 5   VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTKKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTP 221
           N GC GGF   A++Y +   GI S  +Y       PY+      M+              
Sbjct: 63  NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKA-----MD-------------- 96
Query: 222 ECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYK 279
              +KCQ  YD +Y       R    LP   E +++E +   GPV  G    +    LY+
Sbjct: 97  ---QKCQ--YDSAYRAATC--RKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           +G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+
Sbjct: 150 SGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEKGYIRM 198

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 367 RKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGI 424
           +KCQ  YD +Y       R    LP   E +++E +   GPV  G    +    LY++G+
Sbjct: 97  QKCQ--YDSAYRAATC--RKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV 152
Query: 425 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NE 483
           Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+ R + N 
Sbjct: 153 YYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEKGYIRMARNKGNH 205
Query: 484 CGIEA 488
           CGI +
Sbjct: 206 CGIAS 210

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 102/234 (43%), Gaps = 39/234 (16%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++Q  CGS WA  A  A+  +  +  +  + V LS  +LV C +  GN
Sbjct: 5   VDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQ--MFRKTGKLVSLSEQNLVDCSRPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GGF  +A++Y     +   G   S++   PY    E                    
Sbjct: 63  QGCNGGFMARAFQY-----VKENGGLDSEES-YPYVAVDE-------------------- 96
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
           I K +P  + S   D  F  +A   P  E+ +M+ +   GP+  +M   ++    YK+GI
Sbjct: 97  ICKYRP--ENSVAQDTGFTVVA---PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGI 151
Query: 283 YKHVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           Y          +H + ++G+G E      S   KYWLV NS+   WG NG  +I
Sbjct: 152 YFEPDCSSKNLDHGVLVVGYGFEGANSDNS---KYWLVKNSWGPEWGSNGYVKI 202

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 376 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLG 434
           S   D  F  +A   P  E+ +M+ +   GP+  +M   ++    YK+GIY         
Sbjct: 105 SVAQDTGFTVVA---PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKN 161
Query: 435 -EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
            +H + ++G+G E      S   KYWLV NS+   WG NG  +I + + N CGI
Sbjct: 162 LDHGVLVVGYGFEGANSDNS---KYWLVKNSWGPEWGSNGYVKIAKDKNNHCGI 212

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 116/284 (40%), Gaps = 52/284 (18%)
Query: 57  NALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQL-SDPL-EELPEGFDARINWPYCPTIQ 114
           NA   +T  E    M         QNR P   ++  +PL  E P   D    W     + 
Sbjct: 3   NAFGDMTSEEFRQVMNGF------QNRKPRKGKVFQEPLFYEAPRSVD----WREKGYVT 52
Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN GC GG    
Sbjct: 53  PVKNQGQCGSCWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 110
Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           A++Y    G +        +   PYE         +  SC+ N            P Y V
Sbjct: 111 AFQYVQDNGGL------DSEESYPYE--------ATEESCKYN------------PKYSV 144
Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY-KHVAGGPL 291
           +  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY +       
Sbjct: 145 A--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED 198
Query: 292 GEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            +H + ++G+G E      S   KYWLV NS+   WG  G  ++
Sbjct: 199 MDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 239

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
           K  P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY 
Sbjct: 137 KYNPKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 190
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
           +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++ +  +N C
Sbjct: 191 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 247
Query: 485 GIEADITAGLPKI 497
           GI +   A  P +
Sbjct: 248 GIAS--AASYPTV 258

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 52/285 (18%)
Query: 57  NALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQ-LSDPL-EELPEGFDARINWPYCPTIQ 114
           NA   +T  E    M         QNR P   +   +PL  E P   D    W     + 
Sbjct: 61  NAFGDMTSEEFRQVMNGF------QNRKPRKGKVFQEPLFYEAPRSVD----WREKGYVT 110
Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN GC GG    
Sbjct: 111 PVKNQGQCGSXWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 168
Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           A++Y     +   G   S++   PYE         +  SC+ N            P Y V
Sbjct: 169 AFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------------PKYSV 202
Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY-KHVAGGPL 291
           +  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY +       
Sbjct: 203 A--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED 256
Query: 292 GEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIG 336
            +H + ++G+G E      S   KYWLV NS+   WG  G  ++ 
Sbjct: 257 MDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMA 298

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
           K  P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY 
Sbjct: 195 KYNPKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 248
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
           +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++ +  +N C
Sbjct: 249 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 305
Query: 485 GIEADITAGLPKI 497
           GI +   A  P +
Sbjct: 306 GIAS--AASYPTV 316

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 45/236 (19%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
           A ++W     +  ++DQG CGS WA   + A+     I +   + V LS  +LV C  D 
Sbjct: 4   ASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTN--KLVSLSEQELVDCDTDQ 61
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
             GC GG    A+++    G ++       +   PYE            +C  ++ N P 
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGIT------TEANYPYE--------AYDGTCDVSKENAPA 107
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYK 279
                     VS +   N       +P N+E  + +   + PV  S+ I A   D   Y 
Sbjct: 108 ----------VSIDGHEN-------VPENDENALLKAVANQPV--SVAIDAGGSDFQFYS 148
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            G++    G  L +H + I+G+G    G       KYW V NS+   WGE G  R+
Sbjct: 149 EGVFTGSCGTEL-DHGVAIVGYGTTIDG------TKYWTVKNSWGPEWGEKGYIRM 197

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 16/115 (13%)
Query: 389 SLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQ 445
           ++P N+E  + +   + PV  S+ I A   D   Y  G++    G  L +H + I+G+G 
Sbjct: 115 NVPENDENALLKAVANQPV--SVAIDAGGSDFQFYSEGVFTGSCGTEL-DHGVAIVGYGT 171
Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE----CGIEADITAGLPK 496
              G       KYW V NS+   WGE G  R+ RG ++    CGI  + +  + K
Sbjct: 172 TIDG------TKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKK 220

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 118/284 (41%), Gaps = 52/284 (18%)
Query: 57  NALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQL-SDPL-EELPEGFDARINWPYCPTIQ 114
           NA   +T  E    M         QNR P   ++  +PL  E P   D    W     + 
Sbjct: 57  NAFGDMTSEEFRQVMNG------LQNRKPRKGKVFQEPLFYEAPRSVD----WREKGYVT 106
Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN GC GG    
Sbjct: 107 PVKNQGQCGSSWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDY 164
Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           A++Y     +   G   S++   PYE         +  SC+ N            P Y V
Sbjct: 165 AFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------------PKYSV 198
Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY-KHVAGGPL 291
           +  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY +       
Sbjct: 199 A--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED 252
Query: 292 GEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            +H + ++G+G E      S   KYWLV NS+   WG  G  ++
Sbjct: 253 MDHGVLVVGYGFEST---ESDGNKYWLVKNSWGEEWGMGGYVKM 293

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
           K  P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY 
Sbjct: 191 KYNPKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 244
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
           +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++ +  +N C
Sbjct: 245 EPDCSSEDMDHGVLVVGYGFEST---ESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 301
Query: 485 GIEADITAGLPKI 497
           GI +   A  P +
Sbjct: 302 GIAS--AASYPTV 312

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 102/252 (40%), Gaps = 37/252 (14%)
Query: 96  ELPEGFDAR----INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLS 151
           +LP+ +D R    +N+      Q I     CGS WA  +  AM+DR+ I  +G     L 
Sbjct: 35  DLPKSWDWRNVDGVNYASITRNQHIPQY--CGSCWAHASTSAMADRINIKRKGAWPSTLL 92
Query: 152 SDDLVSCCKDCGNG--CQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGS 209
           S   V    DCGN   C+GG     W Y    GI             P E  C  Y    
Sbjct: 93  S---VQNVIDCGNAGSCEGGNDLSVWDYAHQHGI-------------PDET-CNNYQAKD 135
Query: 210 HSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM 269
               + N+  T    ++C    + +     ++G ++       E +M EI+ +GP+   +
Sbjct: 136 QECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS-----GREKMMAEIYANGPISCGI 190
Query: 270 TIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE 329
                +  Y  GIY          H + + GWG   + +GT    +YW+V NS+   WGE
Sbjct: 191 MATERLANYTGGIYAEYQDTTYINHVVSVAGWG---ISDGT----EYWIVRNSWGEPWGE 243
Query: 330 NGLFRIGCRPYE 341
            G  RI    Y+
Sbjct: 244 RGWLRIVTSTYK 255

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           Y   +  E +M EI+ +GP+   +     +  Y  GIY          H + + GWG   
Sbjct: 167 YGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWG--- 223
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIV 478
           + +GT    +YW+V NS+   WGE G  RIV
Sbjct: 224 ISDGT----EYWIVRNSWGEPWGERGWLRIV 250

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN
Sbjct: 6   VDWREKGYVTPVKNQGQCGSAWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 63
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GG    A++Y     +   G   S++   PYE         +  SC+ N       
Sbjct: 64  EGCNGGLMDYAFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------- 102
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
                P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GI
Sbjct: 103 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 151
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           Y +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++
Sbjct: 152 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 202

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
           K  P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY 
Sbjct: 100 KYNPKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 153
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
           +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++ +  +N C
Sbjct: 154 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 210
Query: 485 GIEADITAGLPKI 497
           GI +   A  P +
Sbjct: 211 GIAS--AASYPTV 221

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 106/236 (44%), Gaps = 47/236 (19%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ + +   + V LS+ +LV C  +  G
Sbjct: 5   VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKT--GKLVSLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTP 221
           N GC GGF   A++Y +   GI S  +Y       PY+      M+              
Sbjct: 63  NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKA-----MD-------------- 96
Query: 222 ECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYK 279
              +KCQ  YD  Y       R    LP   E +++E +   GPV  G    +    LY+
Sbjct: 97  ---QKCQ--YDSKYRAAT--CRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           +G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+
Sbjct: 150 SGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEKGYIRM 198

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 14/125 (11%)
Query: 367 RKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGI 424
           +KCQ  YD  Y       R    LP   E +++E +   GPV  G    +    LY++G+
Sbjct: 97  QKCQ--YDSKYRAATC--RKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV 152
Query: 425 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NE 483
           Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+ R + N 
Sbjct: 153 YYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEKGYIRMARNKGNH 205
Query: 484 CGIEA 488
           CGI +
Sbjct: 206 CGIAS 210

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 49/238 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ +  +  + V LS+ +LV C  +  G
Sbjct: 6   VDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 63
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
           N GC GGF   A++Y +   GI S  +Y       PY+   ++        CQ D++   
Sbjct: 64  NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 108
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
             C +  +                   LP   E +++E +   GPV  G    +    LY
Sbjct: 109 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 149
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIG 336
           ++G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+ 
Sbjct: 150 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRMA 200

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           LP   E +++E +   GPV  G    +    LY++G+Y   +      H + ++G+G   
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 176
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
             E       YWLV NS+  N+GE G  R+ R + N CGI +
Sbjct: 177 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ +  +  + V LS+ +LV C  +  G
Sbjct: 7   VDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 64
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
           N GC GGF   A++Y +   GI S  +Y       PY+   ++        CQ D++   
Sbjct: 65  NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 109
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
             C +  +                   LP   E +++E +   GPV  G    +    LY
Sbjct: 110 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 150
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           ++G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+
Sbjct: 151 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 200

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           LP   E +++E +   GPV  G    +    LY++G+Y   +      H + ++G+G   
Sbjct: 118 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 177
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
             E       YWLV NS+  N+GE G  R+ R + N CGI +
Sbjct: 178 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 212

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN
Sbjct: 5   VDWREKGYVTPVKNQGQCGSAWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GG    A++Y     +   G   S++   PYE         +  SC+ N       
Sbjct: 63  EGCNGGLMDYAFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
                P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GI
Sbjct: 102 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           Y +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 201

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
           K  P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY 
Sbjct: 99  KYNPKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
           +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++ +  +N C
Sbjct: 153 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
Query: 485 GIEADITAGLPKI 497
           GI +   A  P +
Sbjct: 210 GIAS--AASYPTV 220

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ +  +  + V LS+ +LV C  +  G
Sbjct: 5   VDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
           N GC GGF   A++Y +   GI S  +Y       PY+   ++        CQ D++   
Sbjct: 63  NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 107
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
             C +  +                   LP   E +++E +   GPV  G    +    LY
Sbjct: 108 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 148
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           ++G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+
Sbjct: 149 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 198

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           LP   E +++E +   GPV  G    +    LY++G+Y   +      H + ++G+G   
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 175
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
             E       YWLV NS+  N+GE G  R+ R + N CGI +
Sbjct: 176 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 47/236 (19%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ +  +  + V LS+ +LV C  +  G
Sbjct: 5   VDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTP 221
           N GC GGF   A++Y +   GI S  +Y  K      ++ C+           D++    
Sbjct: 63  NKGCNGGFMTTAFQYIIDNKGIDSDASYPYK----AMDLKCQ----------YDSKYRAA 108
Query: 222 ECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILYK 279
            C +  +                   LP   E +++E +   GPV  G    +    LY+
Sbjct: 109 TCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           +G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+
Sbjct: 150 SGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 198

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           LP   E +++E +   GPV  G    +    LY++G+Y   +      H + ++G+G   
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 175
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
             E       YWLV NS+  N+GE G  R+ R + N CGI +
Sbjct: 176 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN
Sbjct: 5   VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GG    A++Y     +   G   S++   PYE         +  SC+ N       
Sbjct: 63  EGCNGGLMDYAFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
                P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GI
Sbjct: 102 -----PKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           Y +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFEST---ESDDNKYWLVKNSWGEEWGMGGYVKM 201

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
           K  P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY 
Sbjct: 99  KYNPKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
           +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++ +  +N C
Sbjct: 153 EPDCSSEDMDHGVLVVGYGFEST---ESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
Query: 485 GIEADITAGLPKI 497
           GI +   A  P +
Sbjct: 210 GIAS--AASYPTV 220

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 111/261 (42%), Gaps = 55/261 (21%)
Query: 78  KLPQN-RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSD 136
           K P+N R+P  V    PL        A ++W     + E++DQG CGS W+     A+  
Sbjct: 100 KHPENLRMPY-VSSKKPLA-------ASVDWR-SNAVSEVKDQGQCGSSWSFSTTGAVEG 150
Query: 137 RVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGKAWKYWVTTGIVSGGTYASKQGC 195
           ++ +  RG R   LS  +L+ C    GN GC GG+   A+ Y    GI+S   Y      
Sbjct: 151 QLAL-QRG-RLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAY------ 202
Query: 196 RPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-NEET 254
            PYE   +         C+ +   +   +     GY              Y LP+ +E +
Sbjct: 203 -PYEAQGDY--------CRFDSSQSVTTL----SGY--------------YDLPSGDENS 235
Query: 255 IMREIFRHGPVEGSMTIYADMILYKTGI-YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSV 313
           +   + + GPV  ++    ++  Y  G+ Y          H + ++G+G +       + 
Sbjct: 236 LADAVGQAGPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSD-------NG 288
Query: 314 VKYWLVANSFNTNWGENGLFR 334
             YW++ NS+ + WGE+G +R
Sbjct: 289 QDYWILKNSWGSGWGESGYWR 309

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 388 YSLPA-NEETIMREIFRHGPVEGSMTIYADMILYKTGI-YKHVAGGPLGEHAIRIIGWGQ 445
           Y LP+ +E ++   + + GPV  ++    ++  Y  G+ Y          H + ++G+G 
Sbjct: 226 YDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGS 285
Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
           +       +   YW++ NS+ + WGE+G +R VR   N CGI
Sbjct: 286 D-------NGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGI 320

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN
Sbjct: 5   VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GG    A++Y     +   G   S++   PYE         +  SC+ N       
Sbjct: 63  EGCNGGLMDYAFQY-----VQDNGGLDSEE-SYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
                P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GI
Sbjct: 102 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           Y +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 201

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
           K  P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY 
Sbjct: 99  KYNPKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
           +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++ +  +N C
Sbjct: 153 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
Query: 485 GIEADITAGLPKI 497
           GI +   A  P +
Sbjct: 210 GIAS--AASYPTV 220

>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 37/251 (14%)
Query: 97  LPEGFDAR----INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSS 152
           LP+ +D R    +N+      Q I     CGS WA  +  AM+DR+ I  +G     L S
Sbjct: 1   LPKSWDWRNVDGVNYASITRNQHIPQY--CGSCWAHASTSAMADRINIKRKGAWPSTLLS 58
Query: 153 DDLVSCCKDCGNG--CQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSH 210
              V    DCGN   C+GG     W Y    GI             P E  C  Y     
Sbjct: 59  ---VQNVIDCGNAGSCEGGNDLSVWDYAHQHGI-------------PDET-CNNYQAKDQ 101
Query: 211 SSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMT 270
              + N+  T    ++C    + +     ++G ++       E +M EI+ +GP+   + 
Sbjct: 102 ECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS-----GREKMMAEIYANGPISCGIM 156
Query: 271 IYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGEN 330
               +  Y  GIY          H + + GWG   + +GT    +YW+V NS+   WGE 
Sbjct: 157 ATERLANYTGGIYAEYQDTTYINHVVSVAGWG---ISDGT----EYWIVRNSWGEPWGER 209
Query: 331 GLFRIGCRPYE 341
           G  RI    Y+
Sbjct: 210 GWLRIVTSTYK 220

>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           Y   +  E +M EI+ +GP+   +     +  Y  GIY          H + + GWG   
Sbjct: 132 YGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWG--- 188
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIV 478
           + +GT    +YW+V NS+   WGE G  RIV
Sbjct: 189 ISDGT----EYWIVRNSWGEPWGERGWLRIV 215

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 49/238 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ +  +  + V LS+ +LV C  +  G
Sbjct: 8   VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 65
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
           N GC GGF   A++Y +   GI S  +Y       PY+   ++        CQ D++   
Sbjct: 66  NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 110
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
             C +  +                   LP   E +++E +   GPV  G    +    LY
Sbjct: 111 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 151
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIG 336
           ++G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+ 
Sbjct: 152 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRMA 202

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           LP   E +++E +   GPV  G    +    LY++G+Y   +      H + ++G+G   
Sbjct: 119 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 178
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
             E       YWLV NS+  N+GE G  R+ R + N CGI +
Sbjct: 179 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 213

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 49/236 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     + +I+DQG CGS WA   + A+     IA+     + LS  +LV C +    
Sbjct: 5   VDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIAT--GDLISLSEQELVDCGRTQNT 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GGF    +++ +  G +                              + E N P  
Sbjct: 63  RGCDGGFMTDGFQFIINNGGI------------------------------NTEANYPYT 92
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGI 282
             + Q   D+  E  ++      ++P N E  ++    + PV  ++     +   Y +GI
Sbjct: 93  AEEGQCNLDLQQEKYVSIDTYE-NVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGI 151
Query: 283 YKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           +     GP G   +HA+ I+G+G       T   + YW+V NS+ T WGE G  RI
Sbjct: 152 FT----GPCGTAVDHAVTIVGYG-------TEGGIDYWIVKNSWGTTWGEEGYMRI 196

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 359 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA-DM 417
           E N P    + Q   D+  E  ++      ++P N E  ++    + PV  ++     + 
Sbjct: 86  EANYPYTAEEGQCNLDLQQEKYVSIDTYE-NVPYNNEWALQTAVAYQPVSVALEAAGYNF 144
Query: 418 ILYKTGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL 474
             Y +GI+     GP G   +HA+ I+G+G       T   + YW+V NS+ T WGE G 
Sbjct: 145 QHYSSGIFT----GPCGTAVDHAVTIVGYG-------TEGGIDYWIVKNSWGTTWGEEGY 193
Query: 475 FRIVR---GQNECGI 486
            RI R   G  +CGI
Sbjct: 194 MRIQRNVGGVGQCGI 208

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ +  +  + V LS+ +LV C  +  G
Sbjct: 5   VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
           N GC GGF   A++Y +   GI S  +Y       PY+   ++        CQ D++   
Sbjct: 63  NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 107
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
             C +  +                   LP   E +++E +   GPV  G    +    LY
Sbjct: 108 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 148
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           ++G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+
Sbjct: 149 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 198

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           LP   E +++E +   GPV  G    +    LY++G+Y   +      H + ++G+G   
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 175
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
             E       YWLV NS+  N+GE G  R+ R + N CGI +
Sbjct: 176 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ +  +  + V LS+ +LV C  +  G
Sbjct: 6   VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 63
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
           N GC GGF   A++Y +   GI S  +Y       PY+   ++        CQ D++   
Sbjct: 64  NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 108
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
             C +  +                   LP   E +++E +   GPV  G    +    LY
Sbjct: 109 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 149
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           ++G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+
Sbjct: 150 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 199

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           LP   E +++E +   GPV  G    +    LY++G+Y   +      H + ++G+G   
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 176
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
             E       YWLV NS+  N+GE G  R+ R + N CGI +
Sbjct: 177 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN
Sbjct: 6   VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 63
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GG    A++Y     +   G   S++   PYE         +  SC+ N       
Sbjct: 64  EGCNGGLMDYAFQY-----VQDNGGLDSEES-YPYE--------ATEESCKYN------- 102
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
                P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GI
Sbjct: 103 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 151
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           Y +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++
Sbjct: 152 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 202

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
           K  P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY 
Sbjct: 100 KYNPKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 153
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
           +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++ +  +N C
Sbjct: 154 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 210
Query: 485 GIEADITAGLPKI 497
           GI +   A  P +
Sbjct: 211 GIAS--AASYPTV 221

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ +  +  + V LS+ +LV C  +  G
Sbjct: 6   VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 63
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
           N GC GGF   A++Y +   GI S  +Y       PY+   ++        CQ D++   
Sbjct: 64  NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 108
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
             C +  +                   LP   E +++E +   GPV  G    +    LY
Sbjct: 109 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 149
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           ++G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+
Sbjct: 150 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 199

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           LP   E +++E +   GPV  G    +    LY++G+Y   +      H + ++G+G   
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 176
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEADITAGLPKIG 498
             E       YWLV NS+  N+GE G  R+ R + N CGI +      P+IG
Sbjct: 177 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS--FPSYPEIG 219

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 49/238 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ +  +  + V LS+ +LV C  +  G
Sbjct: 5   VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVSLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
           N GC GGF   A++Y +   GI S  +Y       PY+   ++        CQ D++   
Sbjct: 63  NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 107
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
             C +  +                   LP   E +++E +   GPV  G    +    LY
Sbjct: 108 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 148
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIG 336
           ++G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+ 
Sbjct: 149 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRMA 199

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           LP   E +++E +   GPV  G    +    LY++G+Y   +      H + ++G+G   
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 175
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
             E       YWLV NS+  N+GE G  R+ R + N CGI +
Sbjct: 176 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CG 163
           ++W     + E++ QGSCG+ WA  AV A+  ++ +  +  + V LS+ +LV C  +  G
Sbjct: 5   VDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKL--KTGKLVTLSAQNLVDCSTEKYG 62
Query: 164 N-GCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ-DNEPNT 220
           N GC GGF   A++Y +   GI S  +Y       PY+   ++        CQ D++   
Sbjct: 63  NKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAMDQK--------CQYDSKYRA 107
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMRE-IFRHGPVE-GSMTIYADMILY 278
             C +  +                   LP   E +++E +   GPV  G    +    LY
Sbjct: 108 ATCSKYTE-------------------LPYGREDVLKEAVANKGPVSVGVDARHPSFFLY 148
Query: 279 KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           ++G+Y   +      H + ++G+G     E       YWLV NS+  N+GE G  R+
Sbjct: 149 RSGVYYEPSCTQNVNHGVLVVGYGDLNGKE-------YWLVKNSWGHNFGEEGYIRM 198

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 390 LPANEETIMRE-IFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           LP   E +++E +   GPV  G    +    LY++G+Y   +      H + ++G+G   
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN 175
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEA 488
             E       YWLV NS+  N+GE G  R+ R + N CGI +
Sbjct: 176 GKE-------YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN
Sbjct: 5   VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GG    A++Y     +   G   S++   PYE         +  SC+ N       
Sbjct: 63  EGCNGGLMDYAFQY-----VQDNGGLDSEES-YPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
                P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GI
Sbjct: 102 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           Y +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 201

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
           K  P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY 
Sbjct: 99  KYNPKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
           +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++ +  +N C
Sbjct: 153 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
Query: 485 GIEADITAGLPKI 497
           GI +   A  P +
Sbjct: 210 GIAS--AASYPTV 220

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN
Sbjct: 5   VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GG    A++Y     +   G   S++   PYE         +  SC+ N       
Sbjct: 63  EGCNGGLMDYAFQY-----VQDNGGLDSEES-YPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
                P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GI
Sbjct: 102 -----PKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           Y +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKM 201

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIY- 425
           K  P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GIY 
Sbjct: 99  KYNPKYSVA--NDAGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 426 KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
           +        +H + ++G+G E      S   KYWLV NS+   WG  G  ++ +  +N C
Sbjct: 153 EPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
Query: 485 GIEADITAGLPKI 497
           GI +   A  P +
Sbjct: 210 GIAS--AASYPTV 220

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 49/236 (20%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     + +I+DQG CGS WA   + A+     IA+     + LS  +LV C +    
Sbjct: 5   VDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIAT--GDLISLSEQELVDCGRTQNT 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GGF    +++ +  G +                              + E N P  
Sbjct: 63  RGCDGGFMTDGFQFIINNGGI------------------------------NTEANYPYT 92
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGI 282
             + Q   D+  E  ++      ++P N E  ++    + PV  ++     +   Y +GI
Sbjct: 93  AEEGQCNLDLQQEKYVSIDTYE-NVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGI 151
Query: 283 YKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           +     GP G   +HA+ I+G+G       T   + YW+V NS+ T WGE G  RI
Sbjct: 152 FT----GPCGTAVDHAVTIVGYG-------TEGGIDYWIVKNSWGTTWGEEGYMRI 196

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 359 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA-DM 417
           E N P    + Q   D+  E  ++      ++P N E  ++    + PV  ++     + 
Sbjct: 86  EANYPYTAEEGQCNLDLQQEKYVSIDTYE-NVPYNNEWALQTAVAYQPVSVALEAAGYNF 144
Query: 418 ILYKTGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL 474
             Y +GI+     GP G   +HA+ I+G+G       T   + YW+V NS+ T WGE G 
Sbjct: 145 QHYSSGIFT----GPCGTAVDHAVTIVGYG-------TEGGIDYWIVKNSWGTTWGEEGY 193
Query: 475 FRIVR---GQNECGI 486
            RI R   G  +CGI
Sbjct: 194 MRIQRNVGGVGQCGI 208

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 43/234 (18%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QG CG+ +A  A  A+  +  +  +  R + LS  +LV C    GN
Sbjct: 5   VDWREKGYVTPVKNQGQCGASYAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GG    A++Y    G +        +   PYE         +  SC+ N       
Sbjct: 63  EGCNGGLMDYAFQYVQDNGGLD------SEESYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
                P Y V+  +D+ F      +P  E+ +M+ +   GP+  ++   +   + YK GI
Sbjct: 102 -----PKYSVA--NDVGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 YKHVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           Y           HA+ ++G+G        S+  KYWLV NS+   WG  G  ++
Sbjct: 151 YFSSDCSSSSLNHAMLVVGYGF------ISNNQKYWLVKNSWGEEWGMGGYVKM 198

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 368 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYK 426
           K  P Y V+  +D+ F      +P  E+ +M+ +   GP+  ++   +   + YK GIY 
Sbjct: 99  KYNPKYSVA--NDVGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 152
Query: 427 HVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-QNEC 484
                     HA+ ++G+G        S+  KYWLV NS+   WG  G  ++ +  +N C
Sbjct: 153 SSDCSSSSLNHAMLVVGYGF------ISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 206
Query: 485 GIEADITAGLPKI 497
           GI +   A  P +
Sbjct: 207 GIAS--AASYPTV 217

>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 45/243 (18%)
Query: 99  EGFD-ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS 157
           E FD A  +W     +  ++DQ +CGS WA  ++ ++  +  I  R  + + LS  +LV 
Sbjct: 14  ENFDHAAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAI--RKNKLITLSEQELVD 71
Query: 158 CCKDCGNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
           C      GC GG    A++  +   GI   G Y               Y++ + + C   
Sbjct: 72  CSFK-NYGCNGGLINNAFEDMIELGGICPDGDYP--------------YVSDAPNLCN-- 114
Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRH-GPVEGSMTIYADM 275
                  I +C   Y +         +   S+P N+   ++E  R  GP+  S+ +  D 
Sbjct: 115 -------IDRCTEKYGI---------KNYLSVPDNK---LKEALRFLGPISISVAVSDDF 155
Query: 276 ILYKTGIYKHVAGGPLGEHAIRIIGWG-QEPLGEGTSSVVK--YWLVANSFNTNWGENGL 332
             YK GI+    G  L  HA+ ++G+G +E +   T    K  Y+++ NS+   WGE G 
Sbjct: 156 AFYKEGIFDGECGDQL-NHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGF 214
Query: 333 FRI 335
             I
Sbjct: 215 INI 217

>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 389 SLPANEETIMREIFRH-GPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWG-QE 446
           S+P N+   ++E  R  GP+  S+ +  D   YK GI+    G  L  HA+ ++G+G +E
Sbjct: 129 SVPDNK---LKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQL-NHAVMLVGFGMKE 184
Query: 447 PLGEGTSSVVK--YWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEIDS 503
            +   T    K  Y+++ NS+   WGE G            IE D +  + K GL  D+
Sbjct: 185 IVNPLTKKGEKHYYYIIKNSWGQQWGERGFIN---------IETDESGLMRKCGLGTDA 234

>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 45/243 (18%)
Query: 99  EGFD-ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS 157
           E FD A  +W     +  ++DQ +CGS WA  ++ ++  +  I  R  + + LS  +LV 
Sbjct: 15  ENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAI--RKNKLITLSEQELVD 72
Query: 158 CCKDCGNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
           C      GC GG    A++  +   GI   G Y               Y++ + + C   
Sbjct: 73  CSFK-NYGCNGGLINNAFEDMIELGGICPDGDYP--------------YVSDAPNLCN-- 115
Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRH-GPVEGSMTIYADM 275
                  I +C   Y +         +   S+P N+   ++E  R  GP+  S+ +  D 
Sbjct: 116 -------IDRCTEKYGI---------KNYLSVPDNK---LKEALRFLGPISISVAVSDDF 156
Query: 276 ILYKTGIYKHVAGGPLGEHAIRIIGWG-QEPLGEGTSSVVK--YWLVANSFNTNWGENGL 332
             YK GI+    G  L  HA+ ++G+G +E +   T    K  Y+++ NS+   WGE G 
Sbjct: 157 AFYKEGIFDGECGDQL-NHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGF 215
Query: 333 FRI 335
             I
Sbjct: 216 INI 218

>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 389 SLPANEETIMREIFRH-GPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWG-QE 446
           S+P N+   ++E  R  GP+  S+ +  D   YK GI+    G  L  HA+ ++G+G +E
Sbjct: 130 SVPDNK---LKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQL-NHAVMLVGFGMKE 185
Query: 447 PLGEGTSSVVK--YWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEIDS 503
            +   T    K  Y+++ NS+   WGE G            IE D +  + K GL  D+
Sbjct: 186 IVNPLTKKGEKHYYYIIKNSWGQQWGERGFIN---------IETDESGLMRKCGLGTDA 235

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 112/285 (39%), Gaps = 50/285 (17%)
Query: 57  NALSKLTLSELEMRM-GVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQE 115
           N  + +T  E++    G+   + L +N +P+  +    L      + A  +W     +  
Sbjct: 72  NLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR-YPASFDWRDQGMVSP 130
Query: 116 IRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAW 175
           +++QGSCGS WA  +  A+  ++ IA+       +S   LV C  +   GC GG+   A+
Sbjct: 131 VKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA-LGCSGGWMNDAF 189
Query: 176 KYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSY 235
            Y    G +        +G  PYE+        +  +C  +    P  +     GY    
Sbjct: 190 TYVAQNGGI------DSEGAYPYEM--------ADGNCHYD----PNQVAARLSGY---- 227
Query: 236 EDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGE-- 293
                     Y    +E  +   +   GPV  +         Y  G+Y +    P  E  
Sbjct: 228 ---------VYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYN----PTCETN 274
Query: 294 ---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
              HA+ I+G+G E       +   YWLV NS+   WG +G F+I
Sbjct: 275 KFTHAVLIVGYGNE-------NGQDYWLVKNSWGDGWGLDGYFKI 312

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 436 HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR-GQNECGIEADITAGL 494
           HA+ I+G+G E       +   YWLV NS+   WG +G F+I R   N CGI     A +
Sbjct: 278 HAVLIVGYGNE-------NGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAG--VASV 328
Query: 495 PKI 497
           P +
Sbjct: 329 PTL 331

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 44/235 (18%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  ++DQG CGS WA   V ++     I  R    V LS  +L+ C     +
Sbjct: 8   VDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAI--RTGSLVSLSEQELIDCDTADND 65
Query: 165 GCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
           GCQGG    A++Y     G+++   Y       PY     R   G+ +  +  + N+P  
Sbjct: 66  GCQGGLMDNAFEYIKNNGGLITEAAY-------PY-----RAARGTCNVARAAQ-NSPVV 112
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD---MILYKT 280
           +      +   ++D          +PAN E  +     + PV  S+ + A     + Y  
Sbjct: 113 V------HIDGHQD----------VPANSEEDLARAVANQPV--SVAVEASGKAFMFYSE 154
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           G++    G  L +H + ++G+G    G+       YW V NS+  +WGE G  R+
Sbjct: 155 GVFTGECGTEL-DHGVAVVGYGVAEDGKA------YWTVKNSWGPSWGEQGYIRV 202

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYAD---MILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
           +PAN E  +     + PV  S+ + A     + Y  G++    G  L +H + ++G+G  
Sbjct: 121 VPANSEEDLARAVANQPV--SVAVEASGKAFMFYSEGVFTGECGTEL-DHGVAVVGYGVA 177
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECG 485
             G+       YW V NS+  +WGE G  R+ +     G
Sbjct: 178 EDGKA------YWTVKNSWGPSWGEQGYIRVEKDSGASG 210

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 51/237 (21%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     + +I+ QG CG  WA  A+  +     I S     + LS  +L+ C +    
Sbjct: 5   VDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITS--GSLISLSEQELIDCGRTQNT 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GG+    +++ +  G ++                            ++N P T + 
Sbjct: 63  RGCDGGYITDGFQFIINDGGIN---------------------------TEENYPYTAQ- 94
Query: 224 IRKCQPGYDVSYEDDLNFGRIAY-SLPANEETIMREIFRHGPVEGSMTIYADMI-LYKTG 281
                   DV+ +D        Y ++P N E  ++    + PV  ++    D    Y +G
Sbjct: 95  ----DGDCDVALQDQKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASG 150
Query: 282 IYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           I+     GP G   +HAI I+G+G E         V YW+V NS++T WGE G  RI
Sbjct: 151 IFT----GPCGTAVDHAIVIVGYGTE-------GGVDYWIVKNSWDTTWGEEGYMRI 196

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 389 SLPANEETIMREIFRHGPVEGSMTIYADMI-LYKTGIYKHVAGGPLG---EHAIRIIGWG 444
           ++P N E  ++    + PV  ++    D    Y +GI+     GP G   +HAI I+G+G
Sbjct: 115 NVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASGIFT----GPCGTAVDHAIVIVGYG 170
Query: 445 QEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR---GQNECGI 486
            E         V YW+V NS++T WGE G  RI+R   G   CGI
Sbjct: 171 TE-------GGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 50/242 (20%)
Query: 95  EELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDD 154
           ++LP+  D R N    P    +++QG CGS WA   V A+     I +     + LS   
Sbjct: 1   DDLPDSIDWRENGAVVP----VKNQGGCGSCWAFSTVAAVEGINQIVT--GDLISLSEQQ 54
Query: 155 LVSCCKDCGNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSC 213
           LV C     +GC+GG+   A+++ V   GI S  TY      R  +  C   +N    S 
Sbjct: 55  LVDCTT-ANHGCRGGWMNPAFQFIVNNGGINSEETYPY----RGQDGICNSTVNAPVVSI 109
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA 273
                               SYE+          +P++ E  +++   + PV  +M    
Sbjct: 110 D-------------------SYEN----------VPSHNEQSLQKAVANQPVSVTMDAAG 140
Query: 274 -DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL 332
            D  LY++GI+   +      HA+ ++G+G E   +       +W+V NS+  NWGE+G 
Sbjct: 141 RDFQLYRSGIFTG-SCNISANHALTVVGYGTENDKD-------FWIVKNSWGKNWGESGY 192
Query: 333 FR 334
            R
Sbjct: 193 IR 194

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 389 SLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           ++P++ E  +++   + PV  +M     D  LY++GI+   +      HA+ ++G+G E 
Sbjct: 114 NVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG-SCNISANHALTVVGYGTEN 172
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG----QNECGI 486
             +       +W+V NS+  NWGE+G  R  R       +CGI
Sbjct: 173 DKD-------FWIVKNSWGKNWGESGYIRAERNIENPDGKCGI 208

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 50/246 (20%)
Query: 90  LSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVR 149
           L+D    +PE     ++W     +  +++QGSCGS WA  AV  +   + I  R      
Sbjct: 145 LNDGDVNIPE----YVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKI--RTGNLNE 198
Query: 150 LSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGS 209
            S  +L+ C +    GC GG+   A +     GI    TY   +G + Y   C     G 
Sbjct: 199 YSEQELLDCDRRS-YGCNGGYPWSALQLVAQYGIHYRNTYPY-EGVQRY---CRSREKGP 253
Query: 210 HSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM 269
           +++  D        +R+ QP          N G + YS+     +++ E           
Sbjct: 254 YAAKTDG-------VRQVQP---------YNEGALLYSIANQPVSVVLE----------- 286
Query: 270 TIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE 329
               D  LY+ GI+    G  + +HA+  +G+G             Y L+ NS+ T WGE
Sbjct: 287 AAGKDFQLYRGGIFVGPCGNKV-DHAVAAVGYGP-----------NYILIRNSWGTGWGE 334
Query: 330 NGLFRI 335
           NG  RI
Sbjct: 335 NGYIRI 340

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 43/235 (18%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
           + ++W     + +I+ QG CG  WA  A+  +     I +     + LS  +L+ C +  
Sbjct: 3   SYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVT--GVLISLSEQELIDCGRTQ 60
Query: 163 GN-GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTP 221
              GC GG+    +++ +  G +                              + E N P
Sbjct: 61  NTRGCNGGYITDGFQFIINNGGI------------------------------NTEENYP 90
Query: 222 ECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI-LYKT 280
              +  +   D+  E  +       ++P N E  ++    + PV  ++    D    Y +
Sbjct: 91  YTAQDGECNVDLQNEKYVTIDTYE-NVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSS 149
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           GI+    G  + +HA+ I+G+G E         + YW+V NS++T WGE G  RI
Sbjct: 150 GIFTGPCGTAI-DHAVTIVGYGTE-------GGIDYWIVKNSWDTTWGEEGYMRI 196

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 389 SLPANEETIMREIFRHGPVEGSMTIYADMI-LYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           ++P N E  ++    + PV  ++    D    Y +GI+    G  + +HA+ I+G+G E 
Sbjct: 115 NVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAI-DHAVTIVGYGTE- 172
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVR---GQNECGI 486
                   + YW+V NS++T WGE G  RI+R   G   CGI
Sbjct: 173 ------GGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208

>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 164

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 39/195 (20%)
Query: 97  LPEGFDAR----INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSS 152
           LP  +D R    IN+     +  +R+Q SCGS ++  ++  +  R+ I +   +   LS 
Sbjct: 1   LPTSWDWRNVHGINF-----VSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSP 55
Query: 153 DDLVSCCKDCGNGCQGGF-HGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHS 211
            ++VSC +    GC+GGF +  A KY    G+V       ++ C PY         G+ S
Sbjct: 56  QEVVSCSQY-AQGCEGGFPYLIAGKYAQDFGLV-------EEACFPY--------TGTDS 99
Query: 212 SCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI 271
            C+  E    +C R         Y  + ++    Y    NE  +  E+  HGP+  +  +
Sbjct: 100 PCKMKE----DCFRY--------YSSEYHYVGGFYG-GCNEALMKLELVHHGPMAVAFEV 146
Query: 272 YADMILYKTGIYKHV 286
           Y D + YK GIY H 
Sbjct: 147 YDDFLHYKKGIYHHT 161

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 48/240 (20%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LP    A ++W     +  ++DQ  CGS WA     A+    C  ++  + V LS  +L+
Sbjct: 3   LPSELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHC--AKTGKLVSLSEQELM 60
Query: 157 SCCKDCGN-GCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQ 214
            C +  GN  C GG    A++Y + + GI S   Y       PY               +
Sbjct: 61  DCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAY-------PYLA-------------R 100
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
           D E     C +  +    + ++D          +P   E  M+      PV  S+ I AD
Sbjct: 101 DEECRAQSCEKVVKI---LGFKD----------VPRRSEAAMKAALAKSPV--SIAIEAD 145
Query: 275 MI---LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
            +    Y  G++    G  L +H + ++G+G +       S   +W++ NS+ T WG +G
Sbjct: 146 QMPFQFYHEGVFDASCGTDL-DHGVLLVGYGTD-----KESKKDFWIMKNSWGTGWGRDG 199

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
           +P   E  M+      PV  S+ I AD +    Y  G++    G  L +H + ++G+G +
Sbjct: 121 VPRRSEAAMKAALAKSPV--SIAIEADQMPFQFYHEGVFDASCGTDL-DHGVLLVGYGTD 177
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE---CGIEADIT 491
                  S   +W++ NS+ T WG +G   +   + E   CG+  D +
Sbjct: 178 -----KESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDAS 220

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 97/234 (41%), Gaps = 57/234 (24%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  I++Q  CGS WA  AV A+     I  R  + + LS  +LV C     +
Sbjct: 5   VDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKI--RTGQLISLSEQELVDC-DTASH 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGT---YASKQG-CRPYEIPCERYMNGSHSSCQDNEPNT 220
           GC GG+   A++Y +T G +       Y++ QG C+PY +     +NG     ++NE   
Sbjct: 62  GCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVS-INGFQRVTRNNESAL 120
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
              +   QP   V+ E        A   P          F+H               Y +
Sbjct: 121 QSAVAS-QP-VSVTVE--------AAGAP----------FQH---------------YSS 145
Query: 281 GIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
           GI+     GP G    H + I+G+G       T S   YW+V NS+  NWG  G
Sbjct: 146 GIFT----GPCGTAQNHGVVIVGYG-------TQSGKNYWIVRNSWGQNWGNQG 188

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 48/238 (20%)
Query: 101 FDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCK 160
           +   I+W     +  +++QG+CGS WA   +  +     I +     + LS  +LV C K
Sbjct: 1   YPQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVT--GNLLELSEQELVDCDK 58
Query: 161 DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNT 220
               GC+GG+   + +Y    G+ +   Y       PY+   ++Y               
Sbjct: 59  HS-YGCKGGYQTTSLQYVANNGVHTSKVY-------PYQ--AKQY--------------- 93
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD---MIL 277
            +C    +PG  V       + R+    P+N ET       + P+  S+ + A      L
Sbjct: 94  -KCRATDKPGPKVKI---TGYKRV----PSNXETSFLGALANQPL--SVLVEAGGKPFQL 143
Query: 278 YKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           YK+G++    G  L +HA+  +G+G       TS    Y ++ NS+  NWGE G  R+
Sbjct: 144 YKSGVFDGPCGTKL-DHAVTAVGYG-------TSDGKNYIIIKNSWGPNWGEKGYMRL 193

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYAD---MILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
           +P+N ET       + P+  S+ + A      LYK+G++    G  L +HA+  +G+G  
Sbjct: 113 VPSNXETSFLGALANQPL--SVLVEAGGKPFQLYKSGVFDGPCGTKL-DHAVTAVGYG-- 167
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR----GQNECGI 486
                TS    Y ++ NS+  NWGE G  R+ R     Q  CG+
Sbjct: 168 -----TSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGV 206

>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 42/234 (17%)
Query: 106 NWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNG 165
           +W     +  ++DQ  CGS WA  +V ++  +  I  R K     S  +LV C     NG
Sbjct: 25  DWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAI--RKKALFLFSEQELVDCSVK-NNG 81
Query: 166 CQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIR 225
           C GG+   A+   +  G +          C   + P   Y++    +C          ++
Sbjct: 82  CYGGYITNAFDDMIDLGGL----------CSQDDYP---YVSNLPETCN---------LK 119
Query: 226 KCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRH-GPVEGSMTIYADMILYKTGIYK 284
           +C   Y +         +   S+P ++    +E  R+ GP+  S+    D   Y+ G Y 
Sbjct: 120 RCNERYTI---------KSYVSIPDDK---FKEALRYLGPISISIAASDDFAFYRGGFYD 167
Query: 285 HVAGGPLGEHAIRIIGWGQEPL-GEGTSSVVK--YWLVANSFNTNWGENGLFRI 335
              G     HA+ ++G+G + +  E T  + K  Y+++ NS+ ++WGE G   +
Sbjct: 168 GECGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINL 220

>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 389 SLPANEETIMREIFRH-GPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEP 447
           S+P ++    +E  R+ GP+  S+    D   Y+ G Y    G     HA+ ++G+G + 
Sbjct: 132 SIPDDK---FKEALRYLGPISISIAASDDFAFYRGGFYDGECGAA-PNHAVILVGYGMKD 187
Query: 448 L-GEGTSSVVK--YWLVANSFNTNWGENGLFRIVRGQN 482
           +  E T  + K  Y+++ NS+ ++WGE G   +   +N
Sbjct: 188 IYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDEN 225

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 433 LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITA 492
           L  HA+ ++G+G +     ++S + YW+V NS+ T WGENG FRI RG +EC IE+   A
Sbjct: 8   LTNHAVLLVGYGTD-----SASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVA 62
Query: 493 GLP 495
             P
Sbjct: 63  ATP 65

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 39/233 (16%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
           A ++W     +  ++DQG CGS WA  A+  +  +  +A  G     LS   LVSC K  
Sbjct: 3   AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLSEQMLVSCDKT- 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
            +GC GG    A+++ V     +G  Y       PY                  E  +P 
Sbjct: 60  DSGCSGGLMNNAFEWIVQEN--NGAVYTEDS--YPY---------------ASGEGISPP 100
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGI 282
           C      G+ V        G +   LP +E  I   +  +GPV  ++   + M  Y  G+
Sbjct: 101 CTTS---GHTVGATIT---GHV--ELPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGV 151
Query: 283 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                   L +H + ++G+         S+ V YW++ NS+ T WGE G  RI
Sbjct: 152 MTSCVSEAL-DHGVLLVGYND-------SAAVPYWIIKNSWTTQWGEEGYIRI 196

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
           LP +E  I   +  +GPV  ++   + M  Y  G+        L +H + ++G+      
Sbjct: 118 LPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGVMTSCVSEAL-DHGVLLVGYND---- 171
Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL 494
              S+ V YW++ NS+ T WGE G  RI +G N+C ++ + ++ +
Sbjct: 172 ---SAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213

>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 93/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QGSCGS WA  AV  +   + I  R     + S  +L+ C +    
Sbjct: 5   VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKI--RTGNLNQYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
           GC GG+   A +     GI    TY       PYE        G    C+  E       
Sbjct: 62  GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
            + +R+ QP          N G + YS+     +++ E               D  LY+ 
Sbjct: 107 TDGVRQVQP---------YNEGALLYSIANQPVSVVLEAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           GI+    G  + +HA+  +G+G             Y L+ NS+ T WGENG  RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 39/233 (16%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
           A ++W     +  ++DQG CGS WA  A+  +  +  +A  G     LS   LVSC K  
Sbjct: 3   AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLSEQMLVSCDKT- 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
            +GC GG    A+++ V     +G  Y       PY                  E  +P 
Sbjct: 60  DSGCSGGLMNNAFEWIVQEN--NGAVYTEDS--YPYA---------------SGEGISPP 100
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGI 282
           C      G+ V        G +   LP +E  I   +  +GPV  ++   + M  Y  G+
Sbjct: 101 CTTS---GHTVGATIT---GHV--ELPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGV 151
Query: 283 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                   L +H + ++G+         S+ V YW++ NS+ T WGE G  RI
Sbjct: 152 MTSCVSEQL-DHGVLLVGYND-------SAAVPYWIIKNSWTTQWGEEGYIRI 196

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
           LP +E  I   +  +GPV  ++   + M  Y  G+        L +H + ++G+      
Sbjct: 118 LPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGVMTSCVSEQL-DHGVLLVGYND---- 171
Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL 494
              S+ V YW++ NS+ T WGE G  RI +G N+C ++ + ++ +
Sbjct: 172 ---SAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213

>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 92/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QGSCGS WA  AV  +   + I  R       S  +L+ C +    
Sbjct: 5   VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKI--RTGNLNEYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
           GC GG+   A +     GI    TY       PYE        G    C+  E       
Sbjct: 62  GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
            + +R+ QP          N G + YS+     +++ E               D  LY+ 
Sbjct: 107 TDGVRQVQP---------YNEGALLYSIANQPVSVVLEAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           GI+    G  + +HA+  +G+G             Y L+ NS+ T WGENG  RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189

>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 123/337 (36%), Gaps = 79/337 (23%)
Query: 13  LKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMG 72
           +K  +  + + N S   F D   A      S+   +    G   N LS L+L E + R  
Sbjct: 5   IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSN--GGAINHLSDLSLDEFKNR-- 60
Query: 73  VHPDSKLPQNRLPLLVQLSDPLEELPEGFD---------------ARINWPYCPTIQEIR 117
                          +  ++  E L   FD               A I+     T+  IR
Sbjct: 61  --------------FLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIR 106
Query: 118 DQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKY 177
            QG CGS WA   V A ++   +A R +  + L+  +LV C     +GC G    +  +Y
Sbjct: 107 MQGGCGSAWAFSGV-AATESAYLAYRDQS-LDLAEQELVDCASQ--HGCHGDTIPRGIEY 162
Query: 178 WVTTGIVSGGTY---ASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVS 234
               G+V    Y   A +Q CR      +R+  G  + CQ   PN  +        +   
Sbjct: 163 IQHNGVVQESYYRYVAREQSCR--RPNAQRF--GISNYCQIYPPNANKIREALAQTHSA- 217
Query: 235 YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEH 294
                    IA  +   +     + FRH   +G   I  D             G     H
Sbjct: 218 ---------IAVIIGIKD----LDAFRH--YDGRTIIQRD------------NGYQPNYH 250
Query: 295 AIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
           A+ I+G+         +  V YW+V NS++TNWG+NG
Sbjct: 251 AVNIVGY-------SNAQGVDYWIVRNSWDTNWGDNG 280

>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QGSCGS WA  AV  +   + I  R     + S  +L+ C +    
Sbjct: 5   VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKI--RTGNLNQYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
           GC GG+   A +     GI    TY       PYE        G    C+  E       
Sbjct: 62  GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
            + +R+ QP          N G + YS+     +++ +               D  LY+ 
Sbjct: 107 TDGVRQVQP---------YNQGALLYSIANQPVSVVLQAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           GI+    G  + +HA+  +G+G             Y L+ NS+ T WGENG  RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 90/233 (38%), Gaps = 39/233 (16%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
           A ++W     +  ++DQG CGS WA   +  +  +  +A  G   V LS   LVSC    
Sbjct: 3   AAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVA--GNPLVSLSEQMLVSC-DTI 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
             GC GG    A+ + V     S G     +   PY        NG    CQ N      
Sbjct: 60  DFGCGGGLMDNAFNWIVN----SNGGNVFTEASYPY-----VSGNGEQPQCQMNGHEIGA 110
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGI 282
            I                       LP +E+ I   +  +GP+  ++   + M  Y  GI
Sbjct: 111 AITD------------------HVDLPQDEDAIAAYLAENGPLAIAVDATSFMD-YNGGI 151
Query: 283 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                   L +H + ++G+         +S   YW++ NS++  WGE+G  RI
Sbjct: 152 LTSCTSEQL-DHGVLLVGYND-------ASNPPYWIIKNSWSNMWGEDGYIRI 196

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
           LP +E+ I   +  +GP+  ++   + M  Y  GI        L +H + ++G+      
Sbjct: 118 LPQDEDAIAAYLAENGPLAIAVDATSFMD-YNGGILTSCTSEQL-DHGVLLVGYND---- 171
Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL 494
              +S   YW++ NS++  WGE+G  RI +G N+C +   +++ +
Sbjct: 172 ---ASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAV 213

>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 92/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QGSCGS WA  AV  +   + I  R       S  +L+ C +    
Sbjct: 5   VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKI--RTGNLNEYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
           GC GG+   A +     GI    TY       PYE        G    C+  E       
Sbjct: 62  GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
            + +R+ QP          N G + YS+     +++ E               D  LY+ 
Sbjct: 107 TDGVRQVQP---------YNEGALLYSIANQPVSVVLEAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           GI+    G  + +HA+  +G+G             Y L+ NS+ T WGENG  RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189

>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QGSCGS WA  AV  +   + I  R     + S  +L+ C +    
Sbjct: 5   VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKI--RTGNLNQYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
           GC GG+   A +     GI    TY       PYE        G    C+  E       
Sbjct: 62  GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
            + +R+ QP          N G + YS+     +++ +               D  LY+ 
Sbjct: 107 TDGVRQVQP---------YNQGALLYSIANQPVSVVLQAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           GI+    G  + +HA+  +G+G             Y L+ NS+ T WGENG  RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189

>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 54/235 (22%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QGSCGS WA  AV  +   + I  R     + S  +L+ C +    
Sbjct: 5   VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKI--RTGNLNQYSEQELLDCDRRS-Y 61
Query: 165 GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN----T 220
           GC GG+   A +     GI    TY       PYE        G    C+  E       
Sbjct: 62  GCNGGYPWSALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYAAK 106
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 280
            + +R+ QP          N G + YS+     +++ +               D  LY+ 
Sbjct: 107 TDGVRQVQP---------YNQGALLYSIANQPVSVVLQAAGK-----------DFQLYRG 146
Query: 281 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           GI+    G  + +HA+  +G+G             Y L+ NS+ T WGENG  RI
Sbjct: 147 GIFVGPCGNKV-DHAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 51/229 (22%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
           +  +++QG CGS WA  +V A+  +  +  +  + + LS  +LV C  +  +GC GG+  
Sbjct: 13  VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 69
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
            A++Y     GI S   Y       PY         G   SC  N         KC+ GY
Sbjct: 70  NAFQYVQKNRGIDSEDAY-------PYV--------GQEESCMYNPTGKAA---KCR-GY 110
Query: 232 DVSYEDDLNFGRIAYSLP-ANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHV 286
                           +P  NE+ + R + R GPV  S+ I A +     Y  G+Y    
Sbjct: 111 R--------------EIPEGNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDES 154
Query: 287 AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                  HA+  +G+G+       S   K+W++ NS+  NWG  G  ++
Sbjct: 155 CNSDNLNHAVLAVGYGE-------SKGNKHWIIKNSWGENWGMGGYIKM 196

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
           NE+ + R + R GPV  S+ I A +     Y  G+Y           HA+  +G+G+   
Sbjct: 117 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGE--- 171
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
               S   K+W++ NS+  NWG  G  ++ R +N  CGI A++ A  PK+
Sbjct: 172 ----SKGNKHWIIKNSWGENWGMGGYIKMARNKNNACGI-ANL-ASFPKM 215

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 125/303 (41%), Gaps = 73/303 (24%)
Query: 55  EKNALSKLTLSELEMRMGVHP----------------DSKLPQNRLPLLVQLSDPLEELP 98
           EKN L  +++  LE  +GVH                   K+   ++PL    S+    +P
Sbjct: 36  EKN-LKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIP 94
Query: 99  EGFDAR----INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDD 154
           E ++ R    +++     +  +++QG CGS WA  +V A+  +  +  +  + + LS  +
Sbjct: 95  E-WEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQN 151
Query: 155 LVSCCKDCGNGCQGGFHGKAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSC 213
           LV C  +  +GC GG+   A++Y     GI S   Y       PY         G   SC
Sbjct: 152 LVDCVSE-NDGCGGGYMTNAFQYVQKNRGIDSEDAY-------PYV--------GQEESC 195
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANEETIMREIFRHGPVEGSMTIY 272
             N         KC+ GY                +P  NE+ + R + R GPV  S+ I 
Sbjct: 196 MYNPTGKAA---KCR-GYR--------------EIPEGNEKALKRAVARVGPV--SVAID 235
Query: 273 ADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWG 328
           A +     Y  G+Y           HA+  +G+G   + +G     K+W++ NS+  NWG
Sbjct: 236 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---IQKGN----KHWIIKNSWGENWG 288
Query: 329 ENG 331
             G
Sbjct: 289 NKG 291

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
           NE+ + R + R GPV  S+ I A +     Y  G+Y           HA+  +G+G   +
Sbjct: 216 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---I 270
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
            +G     K+W++ NS+  NWG  G   + R +N  CGI A++ A  PK+
Sbjct: 271 QKGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI-ANL-ASFPKM 314

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 62/243 (25%)
Query: 101 FDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCK 160
           +   I+W     +  +++Q  CGS WA   V  +     I +   + + LS  +L+ C +
Sbjct: 1   YPESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIIT--GQLISLSEQELLDCER 58
Query: 161 DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNT 220
              +GC GG+   + +Y V  G+ +   Y       PYE             C+  +   
Sbjct: 59  R-SHGCDGGYQTTSLQYVVDNGVHTEREY-------PYE--------KKQGRCRAKDKKG 102
Query: 221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD-----M 275
           P+        Y   Y+           +PAN+E  + +   + PV    ++  D      
Sbjct: 103 PKV-------YITGYK----------YVPANDEISLIQAIANQPV----SVVTDSRGRGF 141
Query: 276 ILYKTGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL 332
             YK GIY+    GP G   +HA+  +G+G+            Y L+ NS+  NWGE G 
Sbjct: 142 QFYKGGIYE----GPCGTNTDHAVTAVGYGKT-----------YLLLKNSWGPNWGEKGY 186
Query: 333 FRI 335
            RI
Sbjct: 187 IRI 189

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 31/109 (28%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYAD-----MILYKTGIYKHVAGGPLG---EHAIRII 441
           +PAN+E  + +   + PV    ++  D        YK GIY+    GP G   +HA+  +
Sbjct: 113 VPANDEISLIQAIANQPV----SVVTDSRGRGFQFYKGGIYE----GPCGTNTDHAVTAV 164
Query: 442 GWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG----QNECGI 486
           G+G+            Y L+ NS+  NWGE G  RI R     +  CG+
Sbjct: 165 GYGKT-----------YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202

>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN
Sbjct: 5   VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GG    A++Y    G +        +   PYE         +  SC+ N       
Sbjct: 63  EGCNGGLMDYAFQYVQDNGGL------DSEESYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
                P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GI
Sbjct: 102 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQE 304
           Y +        +H + ++G+G E
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFE 173

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 94/233 (40%), Gaps = 39/233 (16%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
           A ++W     +  ++DQG CGS WA  A+  +  +  +A  G     L+   LVSC K  
Sbjct: 3   AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLAEQMLVSCDKT- 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
            +GC GG    A+++ V     +G  Y       PY                  E  +P 
Sbjct: 60  DSGCSGGLMNNAFEWIVQEN--NGAVYTEDS--YPYA---------------SGEGISPP 100
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGI 282
           C      G+ V        G +   LP +E  I   +  +GPV  ++   + M  Y  G+
Sbjct: 101 CTTS---GHTVGATIT---GHV--ELPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGV 151
Query: 283 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                   L +H + ++G+          + V YW++ NS+ T WGE G  RI
Sbjct: 152 MTSCVSEQL-DHGVLLVGYND-------GAAVPYWIIKNSWTTQWGEEGYIRI 196

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
           LP +E  I   +  +GPV  ++   + M  Y  G+        L +H + ++G+      
Sbjct: 118 LPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGVMTSCVSEQL-DHGVLLVGYND---- 171
Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL 494
               + V YW++ NS+ T WGE G  RI +G N+C ++ + ++ +
Sbjct: 172 ---GAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 94/233 (40%), Gaps = 39/233 (16%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
           A ++W     +  ++DQG CGS WA  A+  +  +  +A  G     L+   LVSC K  
Sbjct: 3   AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLAEQMLVSCDKT- 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
            +GC GG    A+++ V     +G  Y       PY                  E  +P 
Sbjct: 60  DSGCSGGLMNNAFEWIVQEN--NGAVYTEDS--YPYA---------------SGEGISPP 100
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGI 282
           C      G+ V        G +   LP +E  I   +  +GPV  ++   + M  Y  G+
Sbjct: 101 CTTS---GHTVGATIT---GHV--ELPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGV 151
Query: 283 YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                   L +H + ++G+          + V YW++ NS+ T WGE G  RI
Sbjct: 152 MTSCVSEQL-DHGVLLVGYND-------GAAVPYWIIKNSWTTQWGEEGYIRI 196

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
           LP +E  I   +  +GPV  ++   + M  Y  G+        L +H + ++G+      
Sbjct: 118 LPQDEAQIAAWLAVNGPVAVAVDASSWMT-YTGGVMTSCVSEQL-DHGVLLVGYND---- 171
Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL 494
               + V YW++ NS+ T WGE G  RI +G N+C ++ + ++ +
Sbjct: 172 ---GAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 88/240 (36%), Gaps = 54/240 (22%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE  D R      P    +++QG CGS WA   V  +     I  R    + LS   LV
Sbjct: 1   LPEHVDWRAKGAVIP----LKNQGKCGSCWAFSTVTTVESINQI--RTGNLISLSEQQLV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQD 215
            C K   +GC+GG+  +A++Y +   GI +   Y  K     ++ PC            D
Sbjct: 55  DCSKK-NHGCKGGYFDRAYQYIIANGGIDTEANYPYK----AFQGPCRAAKKVVRI---D 106
Query: 216 NEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADM 275
                P+C                           NE  +   +     V          
Sbjct: 107 GCKGVPQC---------------------------NENALKNAVASQPSVVAIDASSKQF 139
Query: 276 ILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
             YK GI+    G  L  H + I+G+G++           YW+V NS+  +WGE G  R+
Sbjct: 140 QHYKGGIFTGPCGTKL-NHGVVIVGYGKD-----------YWIVRNSWGRHWGEQGYTRM 187

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 99/250 (39%), Gaps = 58/250 (23%)
Query: 96  ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDL 155
           + PE +D    W     I +++ QG CGSGWA  A  A+     IA+     V LS  +L
Sbjct: 1   DAPESWD----WSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIAT--GNLVSLSEQEL 54
Query: 156 VSCCKDCGNGCQGGFHGKAWKYWVTT--GIVSGGTYASKQGCRPYEIPCERYMNGSHSSC 213
           + C  D   GC  G+H ++++ WV    GI S   Y       PY+             C
Sbjct: 55  IDCV-DESEGCYNGWHYQSFE-WVVKHGGIASEADY-------PYK--------ARDGKC 97
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFG---RIAYSLPANEETIMREIFRHGPVEGSMT 270
           + NE      I               N+G       S  +  E+ ++      P+  S+ 
Sbjct: 98  KANEIQDKVTID--------------NYGVQILSNESTESEAESSLQSFVLEQPISVSID 143
Query: 271 IYADMILYKTGIYKHVAGG----PLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT 325
              D   Y  GIY    GG    P G  H + I+G+G E         V YW+  NS+  
Sbjct: 144 A-KDFHFYSGGIYD---GGNCSSPYGINHFVLIVGYGSE-------DGVDYWIAKNSWGE 192
Query: 326 NWGENGLFRI 335
           +WG +G  RI
Sbjct: 193 DWGIDGYIRI 202

>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN 164
           ++W     +  +++QG CGS WA  A  A+  +  +  +  R + LS  +LV C    GN
Sbjct: 5   VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 165 -GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC 223
            GC GG    A++Y    G +        +   PYE         +  SC+ N       
Sbjct: 63  EGCNGGLMDYAFQYVQDNGGL------DSEESYPYE--------ATEESCKYN------- 101
Query: 224 IRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI 282
                P Y V+  +D  F      +P  E+ +M+ +   GP+  ++   +   + YK GI
Sbjct: 102 -----PKYSVA--NDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGI 150
Query: 283 Y-KHVAGGPLGEHAIRIIGWGQE 304
           Y +        +H + ++G+G E
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFE 173

>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 96/232 (41%), Gaps = 46/232 (19%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
           A I+     T+  IR QG CGS WA   V A ++   +A R ++ + L+  +LV C    
Sbjct: 12  AEIDLRQMRTVTPIRMQGGCGSXWAFSGV-AATESAYLAYR-QQSLDLAEQELVDCASQ- 68
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTY---ASKQGCRPYEIPCERYMNGSHSSCQDNEPN 219
            +GC G    +  +Y    G+V    Y   A +Q CR      +R+  G  + CQ   PN
Sbjct: 69  -HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCR--RPNAQRF--GISNYCQIYPPN 123
Query: 220 TPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYK 279
             + IR+                 IA  +   +     + FRH   +G   I  D     
Sbjct: 124 ANK-IREALA---------QTHSAIAVIIGIKD----LDAFRH--YDGRTIIQRD----- 162
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
                   G     HA+ I+G+         +  V YW+V NS++TNWG+NG
Sbjct: 163 -------NGYQPNYHAVNIVGY-------SNAQGVDYWIVRNSWDTNWGDNG 200

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 49/224 (21%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
           +  +++QG CGS WA  +V A+  +  +  +  + + LS  +LV C  +  +GC GG+  
Sbjct: 13  VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 69
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
            A++Y     GI S   Y       PY         G   SC  N         KC+ GY
Sbjct: 70  NAFQYVQKNRGIDSEDAY-------PYV--------GQEESCMYNPTGKAA---KCR-GY 110
Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVA 287
               E              NE+ + R + R GPV  S+ I A +     Y  G+Y     
Sbjct: 111 REIPE-------------GNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESC 155
Query: 288 GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
                 HA+  +G+G   + +G     K+W++ NS+  NWG  G
Sbjct: 156 NSDNLNHAVLAVGYG---IQKGN----KHWIIKNSWGENWGNKG 192

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
           NE+ + R + R GPV  S+ I A +     Y  G+Y           HA+  +G+G   +
Sbjct: 117 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---I 171
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
            +G     K+W++ NS+  NWG  G   + R +N  CGI A++ A  PK+
Sbjct: 172 QKGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI-ANL-ASFPKM 215

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 49/224 (21%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
           +  +++QG CGS WA  +V A+  +  +  +  + + LS  +LV C  +  +GC GG+  
Sbjct: 12  VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 68
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
            A++Y     GI S   Y       PY         G   SC  N         KC+ GY
Sbjct: 69  NAFQYVQKNRGIDSEDAY-------PYV--------GQEESCMYNPTGKAA---KCR-GY 109
Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVA 287
               E              NE+ + R + R GPV  S+ I A +     Y  G+Y     
Sbjct: 110 REIPE-------------GNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESC 154
Query: 288 GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
                 HA+  +G+G   + +G     K+W++ NS+  NWG  G
Sbjct: 155 NSDNLNHAVLAVGYG---IQKGN----KHWIIKNSWGENWGNKG 191

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
           NE+ + R + R GPV  S+ I A +     Y  G+Y           HA+  +G+G   +
Sbjct: 116 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---I 170
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
            +G     K+W++ NS+  NWG  G   + R +N  CGI A++ A  PK+
Sbjct: 171 QKGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI-ANL-ASFPKM 214

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 49/224 (21%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
           +  +++QG CGS WA  +V A+  +  +  +  + + LS  +LV C  +  +GC GG+  
Sbjct: 15  VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 71
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
            A++Y     GI S   Y       PY         G   SC  N         KC+ GY
Sbjct: 72  NAFQYVQKNRGIDSEDAY-------PYV--------GQEESCMYNPTGKAA---KCR-GY 112
Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVA 287
               E              NE+ + R + R GPV  S+ I A +     Y  G+Y     
Sbjct: 113 REIPE-------------GNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESC 157
Query: 288 GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
                 HA+  +G+G   + +G     K+W++ NS+  NWG  G
Sbjct: 158 NSDNLNHAVLAVGYG---IQKGN----KHWIIKNSWGENWGNKG 194

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
           NE+ + R + R GPV  S+ I A +     Y  G+Y           HA+  +G+G   +
Sbjct: 119 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---I 173
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
            +G     K+W++ NS+  NWG  G   + R +N  CGI A++ A  PK+
Sbjct: 174 QKGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI-ANL-ASFPKM 217

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 51/225 (22%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
           +  +++QG CGS WA  +V A+  +  +  +  + + LS  +LV C  +  +GC GG+  
Sbjct: 11  VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 67
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
            A++Y     GI S   Y       PY         G   SC  N         KC+ GY
Sbjct: 68  NAFQYVQKNRGIDSEDAY-------PYV--------GQEESCMYNPTGKAA---KCR-GY 108
Query: 232 DVSYEDDLNFGRIAYSLP-ANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHV 286
                           +P  NE+ + R + R GPV  S+ I A +     Y  G+Y    
Sbjct: 109 R--------------EIPEGNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDES 152
Query: 287 AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
                  HA+  +G+G   + +G     K+W++ NS+  NWG  G
Sbjct: 153 CNSDNLNHAVLAVGYG---IQKGN----KHWIIKNSWGENWGNKG 190

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY-KHVAGGPLGEHAIRIIGWGQEPL 448
           NE+ + R + R GPV  S+ I A +     Y  G+Y           HA+  +G+G   +
Sbjct: 115 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---I 169
Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
            +G     K+W++ NS+  NWG  G   + R +N  CGI A++ A  PK+
Sbjct: 170 QKGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI-ANL-ASFPKM 213

>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 102/255 (40%), Gaps = 62/255 (24%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE  D    W     +  +R QGSCGS WA  AV  +     I  R  + V LS  +LV
Sbjct: 1   LPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKI--RTGKLVELSEQELV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGI--VSGGTYASKQGCRPYEIPCERYMNGSHSSCQ 214
            C +   +GC+GG+   A +Y    GI   S   Y +KQG                 +C+
Sbjct: 55  DCERR-SHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG-----------------TCR 96
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
             +   P                    GR+    P NE  ++  I +  PV  S+ + + 
Sbjct: 97  AKQVGGP-------------IVKTSGVGRVQ---PNNEGNLLNAIAKQ-PV--SVVVESK 137
Query: 275 ---MILYKTGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWG 328
                LYK GI++    GP G   EHA+  +       G G S    Y L+ NS+ T WG
Sbjct: 138 GRPFQLYKGGIFE----GPCGTKVEHAVTAV-------GYGKSGGKGYILIKNSWGTAWG 186
Query: 329 ENGLFRIGCRPYEIP 343
           E G  RI   P   P
Sbjct: 187 EKGYIRIKRAPGNSP 201

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 390 LPANEETIMREIFRHGPVEGSMTIYADMILYKTGI---YKHVAGGPLGEHAIRIIGWGQE 446
           L  NE+ +   + + GP+  ++  +  M  Y+ GI    + +    L +HA+ ++G+GQ 
Sbjct: 113 LSQNEQKLAAWLAKRGPISVAINAFG-MQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQR 171
Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGI 486
                  S V +W + NS+ T+WGE G + + RG   CG+
Sbjct: 172 -------SDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGV 204

>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 93/239 (38%), Gaps = 60/239 (25%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
           A I+     T+  IR QG CGS WA   V A ++   +A R ++ + L+  +LV C    
Sbjct: 12  AEIDLRQMRTVTPIRMQGGCGSCWAFSGV-AATESAYLAYR-QQSLDLAEQELVDCASQ- 68
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTY---ASKQGCRPYEIPCERYMNGSHSSCQDNEPN 219
            +GC G    +  +Y    G+V    Y   A +Q CR      +R+  G  + CQ   PN
Sbjct: 69  -HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCR--RPNAQRF--GISNYCQIYPPN 123
Query: 220 TPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREI-------FRHGPVEGSMTIY 272
                                  +I  +L      I   I       FRH   +G   I 
Sbjct: 124 A---------------------NKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQ 160
Query: 273 ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
            D             G     HA+ I+G+         +  V YW+V NS++TNWG+NG
Sbjct: 161 RD------------NGYQPNYHAVNIVGY-------SNAQGVDYWIVRNSWDTNWGDNG 200

>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 95/232 (40%), Gaps = 46/232 (19%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
           A I+     T+  IR QG CGS WA   V A ++   +A R +  + L+  +LV C    
Sbjct: 12  AEIDLRQMRTVTPIRMQGGCGSCWAFSGV-AATESAYLAYRNQS-LDLAEQELVDCASQ- 68
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTY---ASKQGCRPYEIPCERYMNGSHSSCQDNEPN 219
            +GC G    +  +Y    G+V    Y   A +Q CR      +R+  G  + CQ   PN
Sbjct: 69  -HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCR--RPNAQRF--GISNYCQIYPPN 123
Query: 220 TPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYK 279
             + IR+                 IA  +   +     + FRH   +G   I  D     
Sbjct: 124 VNK-IREALA---------QTHSAIAVIIGIKD----LDAFRH--YDGRTIIQRD----- 162
Query: 280 TGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
                   G     HA+ I+G+         +  V YW+V NS++TNWG+NG
Sbjct: 163 -------NGYQPNYHAVNIVGY-------SNAQGVDYWIVRNSWDTNWGDNG 200

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 51/225 (22%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
           +  +++QG CGS WA  +V A+  +  +  +  + + LS  +LV C  +  +GC GG+  
Sbjct: 13  VTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMT 69
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
            A++Y     GI S   Y       PY         G   SC  N         KC+ GY
Sbjct: 70  NAFQYVQRNRGIDSEDAY-------PYV--------GQDESCMYNPTGKAA---KCR-GY 110
Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY--KHV 286
               E              NE+ + R + R GPV  S+ I A +     Y  G+Y  ++ 
Sbjct: 111 REIPE-------------GNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDENC 155
Query: 287 AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
           +   L  HA+  +G+G   + +G     K+W++ NS+  +WG  G
Sbjct: 156 SSDNL-NHAVLAVGYG---IQKGN----KHWIIKNSWGESWGNKG 192

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 393 NEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY--KHVAGGPLGEHAIRIIGWGQEP 447
           NE+ + R + R GPV  S+ I A +     Y  G+Y  ++ +   L  HA+  +G+G   
Sbjct: 117 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDENCSSDNL-NHAVLAVGYG--- 170
Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE-CGIEADITAGLPKI 497
           + +G     K+W++ NS+  +WG  G   + R +N  CGI     A  PK+
Sbjct: 171 IQKGN----KHWIIKNSWGESWGNKGYILMARNKNNACGIAN--LASFPKM 215

>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 102/255 (40%), Gaps = 62/255 (24%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE  D    W     +  +R QGSCGS WA  AV  +     I  R  + V LS  +LV
Sbjct: 1   LPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKI--RTGKLVELSEQELV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGI--VSGGTYASKQGCRPYEIPCERYMNGSHSSCQ 214
            C +   +GC+GG+   A +Y    GI   S   Y +KQG                 +C+
Sbjct: 55  DCERR-SHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG-----------------TCR 96
Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
             +   P                    GR+    P NE  ++  I +  PV  S+ + + 
Sbjct: 97  AKQVGGP-------------IVKTSGVGRVQ---PNNEGNLLNAIAKQ-PV--SVVVESK 137
Query: 275 ---MILYKTGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWG 328
                LYK GI++    GP G   +HA+  +       G G S    Y L+ NS+ T WG
Sbjct: 138 GRPFQLYKGGIFE----GPCGTKVDHAVTAV-------GYGKSGGKGYILIKNSWGTAWG 186
Query: 329 ENGLFRIGCRPYEIP 343
           E G  RI   P   P
Sbjct: 187 EKGYIRIKRAPGNSP 201

>pdb|1PCI|A Chain A, Procaricain Length = 322

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 105/259 (40%), Gaps = 56/259 (21%)
Query: 90  LSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVR 149
           +++ +  LPE  D    W     +  +R QGSCGS WA  AV  +     I  R  + V 
Sbjct: 100 INEDIVNLPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKI--RTGKLVE 153
Query: 150 LSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGI--VSGGTYASKQGCRPYEIPCERYMN 207
           LS  +LV C +   +GC+GG+   A +Y    GI   S   Y +KQG             
Sbjct: 154 LSEQELVDCERRS-HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG------------- 199
Query: 208 GSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEG 267
               +C+  +   P  I K               GR+    P NE  ++  I +  PV  
Sbjct: 200 ----TCRAKQVGGP--IVKTS-----------GVGRVQ---PNNEGNLLNAIAKQ-PV-- 236
Query: 268 SMTIYAD---MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN 324
           S+ + +      LYK GI++    GP G      +      +G G S    Y L+ NS+ 
Sbjct: 237 SVVVESKGRPFQLYKGGIFE----GPCGTKVDGAV----TAVGYGKSGGKGYILIKNSWG 288
Query: 325 TNWGENGLFRIGCRPYEIP 343
           T WGE G  RI   P   P
Sbjct: 289 TAWGEKGYIRIKRAPGNSP 307

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 89/242 (36%), Gaps = 58/242 (23%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE    +I+W     +  +++QGSCGS WA   V  +     I  R    + LS  +LV
Sbjct: 1   LPE----QIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQI--RTGNLISLSEQELV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
            C K   +GC GG    A++Y +  G +                              D 
Sbjct: 55  DCDKK-NHGCLGGAFVFAYQYIINNGGI------------------------------DT 83
Query: 217 EPNTPECIRK--CQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM-TIYA 273
           + N P    +  CQ    V   D  N       +P   E  +++     P   ++    A
Sbjct: 84  QANYPYKAVQGPCQAASKVVSIDGYN------GVPFCNEXALKQAVAVQPSTVAIDASSA 137
Query: 274 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
               Y +GI+    G  L  H + I+G+              YW+V NS+   WGE G  
Sbjct: 138 QFQQYSSGIFSGPCGTKL-NHGVTIVGY-----------QANYWIVRNSWGRYWGEKGYI 185
Query: 334 RI 335
           R+
Sbjct: 186 RM 187

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 87/242 (35%), Gaps = 58/242 (23%)
Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE    +I+W     +  +++QG CGS WA   V  +     I  R    + LS   LV
Sbjct: 1   LPE----QIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQI--RTGNLISLSEQQLV 54
Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIV---SGGTYASKQGCRPYEIPCERYMNGSHSSC 213
            C K   +GC+GG    A++Y +  G +   +   Y + QG      PC           
Sbjct: 55  DCNKK-NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQG------PCRAAKKVVRI-- 105
Query: 214 QDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA 273
            D     P C                           NE  + + +     V        
Sbjct: 106 -DGYKGVPHC---------------------------NENALKKAVASQPSVVAIDASSK 137
Query: 274 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
               YK+GI+    G  L  H + I+G+ ++           YW+V NS+   WGE G  
Sbjct: 138 QFQHYKSGIFSGPCGTKL-NHGVVIVGYWKD-----------YWIVRNSWGRYWGEQGYI 185
Query: 334 RI 335
           R+
Sbjct: 186 RM 187

>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 91/239 (38%), Gaps = 62/239 (25%)
Query: 105 INWPYCPTIQEIRDQGSCGSGWALGAVEAMS--DRVCIASRGKRHVRLSSDDLVSCCKDC 162
           I+W     +  +R+QG CGS W   +V A+   +++          +   D     C+  
Sbjct: 5   IDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLD-----CERR 59
Query: 163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPE 222
             GC+GGF   A +Y   +GI     Y       PYE        G    C+ ++   P+
Sbjct: 60  SYGCRGGFPLYALQYVANSGIHLRQYY-------PYE--------GVQRQCRASQAKGPK 104
Query: 223 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD---MILYK 279
                              GR+    P N E  + +     PV  S+ + A       Y+
Sbjct: 105 V-------------KTDGVGRV----PRNNEQALIQRIAIQPV--SIVVEAKGRAFQNYR 145
Query: 280 TGIYKHVAGGPLG---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            GI+     GP G   +HA+  +G+G +           Y L+ NS+ T WGE G  RI
Sbjct: 146 GGIFA----GPCGTSIDHAVAAVGYGND-----------YILIKNSWGTGWGEGGYIRI 189

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 94/223 (42%), Gaps = 46/223 (20%)
Query: 112 TIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFH 171
           T+  IR QG CGS WA   V A ++   +A R    + LS  +LV C     +GC G   
Sbjct: 22  TVTPIRMQGGCGSCWAFSGV-AATESAYLAYRNTS-LDLSEQELVDCASQ--HGCHGDTI 77
Query: 172 GKAWKYWVTTGIVSGGTY---ASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQ 228
            +  +Y    G+V   +Y   A +Q CR    P  ++  G  + CQ   P+  + IR+  
Sbjct: 78  PRGIEYIQQNGVVEERSYPYVAREQRCRR---PNSQHY-GISNYCQIYPPDVKQ-IREA- 131
Query: 229 PGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAG 288
                     L     A ++    + +    F+H   +G   I            +H  G
Sbjct: 132 ----------LTQTHTAIAVIIGIKDL--RAFQH--YDGRTII------------QHDNG 165
Query: 289 GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
                HA+ I+G+       G++    YW+V NS++T WG++G
Sbjct: 166 YQPNYHAVNIVGY-------GSTQGDDYWIVRNSWDTTWGDSG 201

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 51/225 (22%)
Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
           +  +++QG CGS WA  +V A+  ++  A+     + L+  +LV C  +  +GC GG+  
Sbjct: 13  VTPVKNQGQCGSCWAFSSVGALEGQLKKATGA--LLNLAPQNLVDCVSE-NDGCGGGYMT 69
Query: 173 KAWKY-WVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
            A++Y     GI S   Y       PY         G   SC  N         KC+ GY
Sbjct: 70  NAFQYVQRNRGIDSEDAY-------PYV--------GQDESCMYNPTGKAA---KCR-GY 110
Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI---LYKTGIY--KHV 286
               E              NE  + R +   GPV  S+ I A +     Y  G+Y  ++ 
Sbjct: 111 REIPE-------------GNEAALKRAVAAVGPV--SVAIDASLTSFQFYSAGVYYDENC 155
Query: 287 AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG 331
           +   L  HA+  +G+G +          K+W++ NS+  +WG  G
Sbjct: 156 SSDAL-NHAVLAVGYGIQAGN-------KHWIIKNSWGESWGNAG 192

>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 97/241 (40%), Gaps = 54/241 (22%)
Query: 103 ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC 162
           A I+W     +  ++DQG+CG  WA GA  A+     I +   R + +S   +V  C   
Sbjct: 3   ASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITT--GRLISVSEQQIVD-CDTX 59
Query: 163 GNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTP 221
                GG    A+++ +T  GI S   Y       PY         G   +C  N+P   
Sbjct: 60  XXXXXGGDADDAFRWVITNGGIASDANY-------PY--------TGVDGTCDLNKP--- 101
Query: 222 ECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT- 280
             I     GY               ++P +   ++  + +  PV  S+ IY     ++  
Sbjct: 102 --IAARIDGY--------------TNVPNSSSALLDAVAKQ-PV--SVNIYTSSTSFQLY 142
Query: 281 ---GIY--KHVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
              GI+     +  P   +H + I+G+G      GT++   YW+V NS+ T WG +G   
Sbjct: 143 TGPGIFAGSSCSDDPATVDHTVLIVGYGS----NGTNA--DYWIVKNSWGTEWGIDGYIL 196
Query: 335 I 335
           I
Sbjct: 197 I 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	524
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	1e-115
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	7e-67
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	1e-113
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	2e-65
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	1e-112
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	4e-67
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	1e-103
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	2e-57
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	3e-81
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	4e-47
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	1e-75
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	2e-42
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	2e-46
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	9e-22
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	4e-31
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	4e-16
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	3e-23
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	6e-13
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	4e-22
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	1e-12
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	5e-22
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	3e-13
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	5e-22
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	2e-11
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	5e-22
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	2e-12
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	5e-22
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	4e-12
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	5e-22
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	2e-15
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	2e-21
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	7e-17
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	2e-21
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	1e-11
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	3e-21
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	5e-11
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	3e-21
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	1e-11
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	4e-21
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	1e-11
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	5e-21
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	8e-12
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	5e-21
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	4e-11
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	8e-21
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	2e-16
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	9e-21
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	2e-11
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	1e-20
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	3e-13
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	2e-20
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	5e-13
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	4e-20
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	5e-12
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	7e-20
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	9e-13
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	9e-20
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	5e-12
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	1e-19
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	3e-11
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	2e-19
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	3e-11
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	5e-19
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	6e-11
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	5e-19
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	1e-10
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	7e-19
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	2e-10
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	3e-18
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	5e-12
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	3e-18
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	7e-12
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	5e-18
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	7e-11
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	1e-17
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	1e-10
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	2e-13
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score =  342 bits (879), Expect = e-115
 Identities = 133/276 (48%), Positives = 183/276 (66%), Gaps = 15/276 (5%)

Query: 62  LTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGS 121
           + +S L+   G       P  R+     +     +LP  FDAR  WP CPTI+EIRDQGS
Sbjct: 34  VDMSYLKRLCGTFLGGPKPPQRV-----MFTEDLKLPASFDAREQWPQCPTIKEIRDQGS 88

Query: 122 CGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CGNGCQGGFHGKAWKYWVT 180
           CGS WA GAVEA+SDR+CI +     V +S++DL++CC   CG+GC GG+  +AW +W  
Sbjct: 89  CGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTR 148

Query: 181 TGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDL 239
            G+VSGG Y S  GCRPY I PCE ++NGS   C      TP+C + C+PGY  +Y+ D 
Sbjct: 149 KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGD-TPKCSKICEPGYSPTYKQDK 207

Query: 240 NFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRII 299
           ++G  +YS+  +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+
Sbjct: 208 HYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRIL 267

Query: 300 GWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           GWG E    GT     YWLVANS+NT+WG+NG F+I
Sbjct: 268 GWGVE---NGT----PYWLVANSWNTDWGDNGFFKI 296

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score =  217 bits (555), Expect = 7e-67
 Identities = 84/171 (49%), Positives = 122/171 (71%), Gaps = 9/171 (5%)

Query: 328 GENGLFRIGCRPYEI-PCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRI 386
           G      +GCRPY I PCE ++NGSR  C      TP+C + C+PGY  +Y+ D ++G  
Sbjct: 154 GGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGD-TPKCSKICEPGYSPTYKQDKHYGYN 212

Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
           +YS+  +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E
Sbjct: 213 SYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE 272

Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKI 497
               GT     YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+ 
Sbjct: 273 ---NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRT 316

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  335 bits (861), Expect = e-113
 Identities = 120/241 (49%), Positives = 152/241 (63%), Gaps = 8/241 (3%)

Query: 96  ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDL 155
           E+P  FD+R  WP C +I  IRDQ  CGS WA GAVEAMSDR CI S GK++V LS+ DL
Sbjct: 2   EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61

Query: 156 VSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSSCQ 214
           +SCC+ CG GC+GG  G AW YWV  GIV+G +  +  GC PY    CE +  G +  C 
Sbjct: 62  LSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCG 121

Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
                TP C + CQ  Y   Y  D + G+ +Y++  +E+ I +EI ++GPVE   T+Y D
Sbjct: 122 SKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYED 181

Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
            + YK+GIYKH+ G  LG HAIRIIGWG E           YWL+ANS+N +WGENG FR
Sbjct: 182 FLNYKSGIYKHITGETLGGHAIRIIGWGVE---NKA----PYWLIANSWNEDWGENGYFR 234

Query: 335 I 335
           I
Sbjct: 235 I 235

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  211 bits (540), Expect = 2e-65
 Identities = 75/169 (44%), Positives = 101/169 (59%), Gaps = 8/169 (4%)

Query: 328 GENGLFRIGCRPYEI-PCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRI 386
           G +     GC PY    CE +  G    C +    TP C + CQ  Y   Y  D + G+ 
Sbjct: 92  GSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKS 151

Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
           +Y++  +E+ I +EI ++GPVE   T+Y D + YK+GIYKH+ G  LG HAIRIIGWG E
Sbjct: 152 SYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVE 211

Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
                      YWL+ANS+N +WGENG FRIVRG++EC IE+++TAG  
Sbjct: 212 ---NKA----PYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTAGRI 253

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score =  333 bits (856), Expect = e-112
 Identities = 127/243 (52%), Positives = 173/243 (71%), Gaps = 10/243 (4%)

Query: 95  EELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDD 154
            +LP  FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +     V +S++D
Sbjct: 5   LKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAED 64

Query: 155 LVSCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHSS 212
           L++CC   CG+GC GG+  +AW +W   G+VSGG Y S  GCRPY I PCE ++NG+   
Sbjct: 65  LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPP 124

Query: 213 CQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIY 272
           C      TP+C + C+PGY  +Y+ D ++G  +YS+  +E+ IM EI+++GPVEG+ ++Y
Sbjct: 125 CTGEGD-TPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY 183

Query: 273 ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL 332
           +D +LYK+G+Y+HV G  +G HAIRI+GWG E    GT     YWLVANS+NT+WG+NG 
Sbjct: 184 SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE---NGT----PYWLVANSWNTDWGDNGF 236

Query: 333 FRI 335
           F+I
Sbjct: 237 FKI 239

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score =  216 bits (553), Expect = 4e-67
 Identities = 83/171 (48%), Positives = 122/171 (71%), Gaps = 9/171 (5%)

Query: 328 GENGLFRIGCRPYEI-PCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRI 386
           G      +GCRPY I PCE ++NG+R  C      TP+C + C+PGY  +Y+ D ++G  
Sbjct: 97  GGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGD-TPKCSKICEPGYSPTYKQDKHYGYN 155

Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
           +YS+  +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG E
Sbjct: 156 SYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE 215

Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKI 497
               GT     YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+ 
Sbjct: 216 ---NGT----PYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRT 259

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  312 bits (802), Expect = e-103
 Identities = 101/286 (35%), Positives = 142/286 (49%), Gaps = 23/286 (8%)

Query: 54  AEKNA-LSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPT 112
           A+ +  +  +TL E +   GV   +              +    LP  FD+   WP CPT
Sbjct: 28  AKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCPT 87

Query: 113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHG 172
           I +I DQ +CGS WA+ A  AMSDR C    G + V +S+ DL++CC DCG+GC GG   
Sbjct: 88  IPQIADQSACGSCWAVAAASAMSDRFCTMG-GVQDVHISAGDLLACCSDCGDGCNGGDPD 146

Query: 173 KAWKYWVTTGIVSGGTYASKQGCRPYEI-PCERYMNGSHS--SCQDNEPNTPECIRKCQP 229
           +AW Y+ +TG+VS         C+PY    C  +    +    C     +TP+C   C  
Sbjct: 147 RAWAYFSSTGLVSD-------YCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDD 199

Query: 230 GYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG 289
                          +Y+L   E+  MRE+F  GP E +  +Y D I Y +G+Y HV+G 
Sbjct: 200 PT---IPVVNYRSWTSYALQ-GEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQ 255

Query: 290 PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            LG HA+R++GWG      G      YW +ANS+NT WG +G F I
Sbjct: 256 YLGGHAVRLVGWGTS---NGV----PYWKIANSWNTEWGMDGYFLI 294

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  193 bits (492), Expect = 2e-57
 Identities = 61/174 (35%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 327 WGENGLFRIGCRPYEI-PCERYMNGSRS--SCQANEPNTPECIRKCQPGYDVSYEDDLNF 383
           +   GL    C+PY    C  +         C     +TP+C   C              
Sbjct: 152 FSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPT---IPVVNYR 208

Query: 384 GRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGW 443
              +Y+L   E+  MRE+F  GP E +  +Y D I Y +G+Y HV+G  LG HA+R++GW
Sbjct: 209 SWTSYALQ-GEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGW 267

Query: 444 GQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKI 497
           G      G      YW +ANS+NT WG +G F I RG +ECGIE   +AG+P  
Sbjct: 268 GTS---NGV----PYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIPLA 314

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  253 bits (649), Expect = 3e-81
 Identities = 64/263 (24%), Positives = 101/263 (38%), Gaps = 34/263 (12%)

Query: 77  SKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQ---GSCGSGWALGAVEA 133
           + L +   P   +   P  +LP+ +D R N          R+Q     CGS WA  +  A
Sbjct: 17  APLGRTTYPRPHEYLSP-ADLPKSWDWR-NVDGVNYASITRNQHIPQYCGSCWAHASTSA 74

Query: 134 MSDRVCIASRGKRH-VRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASK 192
           M+DR+ I  +G      LS  +++ C       C+GG     W Y    GI         
Sbjct: 75  MADRINIKRKGAWPSTLLSVQNVIDCG--NAGSCEGGNDLSVWDYAHQHGIPD------- 125

Query: 193 QGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANE 252
           + C  Y+       +      + N+  T    ++C    + +           Y   +  
Sbjct: 126 ETCNNYQAK-----DQEC--DKFNQCGTCNEFKECHAIRNYTLWRV-----GDYGSLSGR 173

Query: 253 ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSS 312
           E +M EI+ +GP+   +     +  Y  GIY          H + + GWG     +GT  
Sbjct: 174 EKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGIS---DGT-- 228

Query: 313 VVKYWLVANSFNTNWGENGLFRI 335
             +YW+V NS+   WGE G  RI
Sbjct: 229 --EYWIVRNSWGEPWGERGWLRI 249

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  164 bits (417), Expect = 4e-47
 Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 33/182 (18%)

Query: 327 WGENGLFRIGCRPYEI---PCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNF 383
             ++G+    C  Y+     C+++          N+  T    ++C    + +       
Sbjct: 118 AHQHGIPDETCNNYQAKDQECDKF----------NQCGTCNEFKECHAIRNYTLWRV--- 164

Query: 384 GRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGW 443
               Y   +  E +M EI+ +GP+   +     +  Y  GIY          H + + GW
Sbjct: 165 --GDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGW 222

Query: 444 GQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECG--------IEADITAGLP 495
           G     +GT    +YW+V NS+   WGE G  RIV    + G        IE   T G P
Sbjct: 223 GIS---DGT----EYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDP 275

Query: 496 KI 497
            +
Sbjct: 276 IV 277

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  244 bits (624), Expect = 1e-75
 Identities = 78/286 (27%), Positives = 121/286 (42%), Gaps = 42/286 (14%)

Query: 57  NALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEI 116
                LTL ++  R G H          PL  ++   +  LP  +D R        +  +
Sbjct: 167 MEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVHG-INFVSPV 225

Query: 117 RDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGF-HGKAW 175
           R+Q SCGS ++  ++  +  R+ I +   +   LS  ++VSC +    GC+GGF +  A 
Sbjct: 226 RNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ-YAQGCEGGFPYLIAG 284

Query: 176 KYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSY 235
           KY    G+V        + C PY         G+ S C+            C   Y   Y
Sbjct: 285 KYAQDFGLVE-------EACFPYT--------GTDSPCK--------MKEDCFRYYSSEY 321

Query: 236 EDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGP----- 290
                     +    NE  +  E+  HGP+  +  +Y D + YK GIY H          
Sbjct: 322 HYVG-----GFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPF 376

Query: 291 -LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            L  HA+ ++G+G +     ++S + YW+V NS+ T WGENG FRI
Sbjct: 377 ELTNHAVLLVGYGTD-----SASGMDYWIVKNSWGTGWGENGYFRI 417

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  156 bits (396), Expect = 2e-42
 Identities = 53/175 (30%), Positives = 75/175 (42%), Gaps = 32/175 (18%)

Query: 327 WGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRI 386
             + GL    C PY         G+ S C+            C   Y   Y         
Sbjct: 287 AQDFGLVEEACFPYT--------GTDSPCK--------MKEDCFRYYSSEYHYVG----- 325

Query: 387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGP------LGEHAIRI 440
            +    NE  +  E+  HGP+  +  +Y D + YK GIY H           L  HA+ +
Sbjct: 326 GFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLL 385

Query: 441 IGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP 495
           +G+G +     ++S + YW+V NS+ T WGENG FRI RG +EC IE+   A  P
Sbjct: 386 VGYGTD-----SASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP 435

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score =  162 bits (412), Expect = 2e-46
 Identities = 47/279 (16%), Positives = 81/279 (29%), Gaps = 45/279 (16%)

Query: 70  RMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALG 129
             G  PD  +   R          +  LP   D    +        + DQG  GS  A  
Sbjct: 32  GYGYIPD--IADIRDFSYTPEKSVIAALPPKVDLTPPFQ-------VYDQGRIGSCTANA 82

Query: 130 AVEAMSDRVCIASRGKRHVRLSSDDLVSCCK--DCGNGCQGGFHGKAWKYWVTTGIVSGG 187
              A+        +    +        +  K     N   G       K     G+    
Sbjct: 83  LAAAIQFERIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEK 142

Query: 188 TYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYS 247
            +       PY                  E   P      +P  D  Y+D  N+    YS
Sbjct: 143 EW-------PYGDTPA---------DPRTEEFPPGAPASKKPS-DQCYKDAQNYKITEYS 185

Query: 248 -LPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYK----HVAGGPLGEHAIRIIGWG 302
            +  + + +   +    P     ++Y   +   +   +           G HA+  +G+ 
Sbjct: 186 RVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYD 245

Query: 303 QEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYE 341
            E         ++++ + NS+  N GE+G F +   PYE
Sbjct: 246 DE---------IRHFRIRNSWGNNVGEDGYFWM---PYE 272

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score = 94.5 bits (235), Expect = 9e-22
 Identities = 23/169 (13%), Positives = 54/169 (31%), Gaps = 25/169 (14%)

Query: 327 WGENGLFRIGCRPYEI-PCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGR 385
             + G+      PY   P +           A++  + +C +  Q      Y        
Sbjct: 133 LHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEY-------- 184

Query: 386 IAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYK----HVAGGPLGEHAIRII 441
               +  + + +   +    P     ++Y   +   +   +           G HA+  +
Sbjct: 185 --SRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCV 242

Query: 442 GWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIEAD 489
           G+  E         ++++ + NS+  N GE+G F +     +   +  D
Sbjct: 243 GYDDE---------IRHFRIRNSWGNNVGEDGYFWMPYEYISNTQLADD 282

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score =  120 bits (303), Expect = 4e-31
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 28/249 (11%)

Query: 106 NWPYCP---------TIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           N  YC          +  ++ DQG+C + W   +   +    C+  +G    ++S+  + 
Sbjct: 6   NKEYCNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCM--KGYEPTKISALYVA 63

Query: 157 SCCKDCGN-GCQGGFHGKAWKYWV--TTGIVSGGTY---ASKQGCRPYEIPCERYMNGSH 210
           +C K      C  G     +   +     + +   Y     K G +  ++         +
Sbjct: 64  NCYKGEHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDN 123

Query: 211 SSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMT 270
                N+        K    Y+     D         + A  + I  E+   G V   + 
Sbjct: 124 GKILHNKNEPNSLDGKGYTAYESERFHDN--------MDAFVKIIKTEVMNKGSVIAYIK 175

Query: 271 IYADMILYKTGIY-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE 329
               M    +G   K++ G    +HA+ I+G+G     EG      YW+V NS+   WG+
Sbjct: 176 AENVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKK--SYWIVRNSWGPYWGD 233

Query: 330 NGLFRIGCR 338
            G F++   
Sbjct: 234 EGYFKVDMY 242

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 6/152 (3%)

Query: 339 PYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYS--LPANEET 396
           PY                 N  +  + +        +  +    +    +   + A  + 
Sbjct: 100 PYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKI 159

Query: 397 IMREIFRHGPVEGSMTIYADMILYKTGIY-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSV 455
           I  E+   G V   +     M    +G   K++ G    +HA+ I+G+G     EG    
Sbjct: 160 IKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKK- 218

Query: 456 VKYWLVANSFNTNWGENGLFRIVR-GQNECGI 486
             YW+V NS+   WG+ G F++   G   C  
Sbjct: 219 -SYWIVRNSWGPYWGDEGYFKVDMYGPTHCHF 249

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score = 99.2 bits (248), Expect = 3e-23
 Identities = 70/286 (24%), Positives = 109/286 (38%), Gaps = 56/286 (19%)

Query: 57  NALSKLTLSEL-EMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQE 115
           NA   +T  E  ++  G                       E P   D    W     +  
Sbjct: 61  NAFGDMTSEEFRQVMNGFQNRKPRKGKVFQ-----EPLFYEAPRSVD----WREKGYVTP 111

Query: 116 IRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGKA 174
           +++QG CGS WA  A  A+  ++   + G+  + LS  +LV C    GN GC GG    A
Sbjct: 112 VKNQGQCGSCWAFSATGALEGQMFRKT-GRL-ISLSEQNLVDCSGPQGNEGCNGGLMDYA 169

Query: 175 WKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           ++Y     G+ S  +Y       PYE         +  SC+ N   +           D 
Sbjct: 170 FQYVQDNGGLDSEESY-------PYE--------ATEESCKYNPKYSV--------ANDA 206

Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGP 290
            + D          +P  E+ +M+ +   GP+  S+ I A     + YK GIY       
Sbjct: 207 GFVD----------IPKQEKALMKAVATVGPI--SVAIDAGHESFLFYKEGIYFEPDCSS 254

Query: 291 LG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
              +H + ++G+G E      +   KYWLV NS+   WG  G  ++
Sbjct: 255 EDMDHGVLVVGYGFESTESDNN---KYWLVKNSWGEEWGMGGYVKM 297

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score = 68.8 bits (169), Expect = 6e-13
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 10/104 (9%)

Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLG-EHAIRIIGW 443
             +P  E+ +M+ +   GP+  S+ I A     + YK GIY          +H + ++G+
Sbjct: 209 VDIPKQEKALMKAVATVGPI--SVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY 266

Query: 444 GQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
           G E      +   KYWLV NS+   WG  G  ++ + + N CGI
Sbjct: 267 GFESTESDNN---KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 307

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score = 95.8 bits (239), Expect = 4e-22
 Identities = 62/292 (21%), Positives = 102/292 (34%), Gaps = 71/292 (24%)

Query: 57  NALSKLTLSEL-EMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINW-------P 108
           N  + +T  E     +          + L   V        +P+  D    W        
Sbjct: 54  NQFTDMTFEEFKAKYLTEMSR---ASDILSHGVPYEANNRAVPDKID----WRESGYVTE 106

Query: 109 YCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQ 167
                  ++DQG+CGSGWA      M  +          +  S   LV C +  GN GC 
Sbjct: 107 -------VKDQGNCGSGWAFSTTGTMEGQYMKNE-RTS-ISFSEQQLVDCSRPWGNNGCG 157

Query: 168 GGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKC 227
           GG    A++Y    G+ +  +Y       PY              C+ N+          
Sbjct: 158 GGLMENAYQYLKQFGLETESSY-------PYT--------AVEGQCRYNKQLGV------ 196

Query: 228 QPGYDVSYEDDLNFGRIAYSLPAN-EETIMREIFRHGPVEGSMTIYA--DMILYKTGIYK 284
                  +            + +  E  +   +   GP   ++ +    D ++Y++GIY+
Sbjct: 197 --AKVTGFYT----------VHSGSEVELKNLVGAEGPA--AVAVDVESDFMMYRSGIYQ 242

Query: 285 HVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                PL   HA+  +G+G +    GT     YW+V NS+  +WGE G  R+
Sbjct: 243 SQTCSPLRVNHAVLAVGYGTQ---GGT----DYWIVKNSWGLSWGERGYIRM 287

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 13/98 (13%)

Query: 393 NEETIMREIFRHGPVEGSMTIYA--DMILYKTGIYKHVAGGPLG-EHAIRIIGWGQEPLG 449
           +E  +   +   GP   ++ +    D ++Y++GIY+     PL   HA+  +G+G +   
Sbjct: 209 SEVELKNLVGAEGPA--AVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQ--- 263

Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
            GT     YW+V NS+  +WGE G  R+VR + N CGI
Sbjct: 264 GGT----DYWIVKNSWGLSWGERGYIRMVRNRGNMCGI 297

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score = 93.7 bits (234), Expect = 5e-22
 Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 46/227 (20%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +++QG CGS WA  A  A+  ++   + G+  + LS  +LV C    GN GC GG    
Sbjct: 15  PVKNQGQCGSCWAFSATGALEGQMFRKT-GRL-ISLSEQNLVDCSGPQGNEGCNGGLMDY 72

Query: 174 AWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYD 232
           A++Y     G+ S  +Y       PYE         +  SC+ N   +           D
Sbjct: 73  AFQYVQDNGGLDSEESY-------PYE--------ATEESCKYNPKYSV--------AND 109

Query: 233 VSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGG 289
             + D          +P  E+ +M+ +   GP+  S+ I A     + YK GIY      
Sbjct: 110 TGFVD----------IPKQEKALMKAVATVGPI--SVAIDAGHESFLFYKEGIYFEPDCS 157

Query: 290 PLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
               +H + ++G+G E      +   KYWLV NS+   WG  G  ++
Sbjct: 158 SEDMDHGVLVVGYGFESTESDNN---KYWLVKNSWGEEWGMGGYVKM 201

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 10/102 (9%)

Query: 390 LPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLG-EHAIRIIGWGQ 445
           +P  E+ +M+ +   GP+  S+ I A     + YK GIY          +H + ++G+G 
Sbjct: 115 IPKQEKALMKAVATVGPI--SVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGF 172

Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
           E      +   KYWLV NS+   WG  G  ++ + + N CGI
Sbjct: 173 ESTESDNN---KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 211

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score = 96.2 bits (240), Expect = 5e-22
 Identities = 64/285 (22%), Positives = 110/285 (38%), Gaps = 57/285 (20%)

Query: 57  NALSKLTLSE-LEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQE 115
           N    ++  E L            P++   L +      + L    D R N      + E
Sbjct: 77  NQFGDMSKEEFLAYVNRGKAQK--PKHPENLRMPYVSSKKPLAASVDWRSN-----AVSE 129

Query: 116 IRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGKA 174
           ++DQG CGS W+     A+  ++ +   G+    LS  +L+ C    GN GC GG+   A
Sbjct: 130 VKDQGQCGSSWSFSTTGAVEGQLALQR-GRL-TSLSEQNLIDCSSSYGNAGCDGGWMDSA 187

Query: 175 WKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVS 234
           + Y    GI+S   Y       PYE             C+ +   +              
Sbjct: 188 FSYIHDYGIMSESAY-------PYE--------AQGDYCRFDSSQSV--------TTLSG 224

Query: 235 YEDDLNFGRIAYSLPA-NEETIMREIFRHGPVEGSMTIYA--DMILYKTGIYKHVAGGPL 291
           Y D          LP+ +E ++   + + GPV  ++ I A  ++  Y  G++        
Sbjct: 225 YYD----------LPSGDENSLADAVGQAGPV--AVAIDATDELQFYSGGLFYDQTCNQS 272

Query: 292 G-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
              H + ++G+G +    G      YW++ NS+ + WGE+G +R 
Sbjct: 273 DLNHGVLVVGYGSD---NGQ----DYWILKNSWGSGWGESGYWRQ 310

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 13/98 (13%)

Query: 393 NEETIMREIFRHGPVEGSMTIYA--DMILYKTGIYKHVAGGPLG-EHAIRIIGWGQEPLG 449
           +E ++   + + GPV  ++ I A  ++  Y  G++           H + ++G+G +   
Sbjct: 232 DENSLADAVGQAGPV--AVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSD--- 286

Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
            G      YW++ NS+ + WGE+G +R VR   N CGI
Sbjct: 287 NGQ----DYWILKNSWGSGWGESGYWRQVRNYGNNCGI 320

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score = 93.3 bits (233), Expect = 5e-22
 Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 60/228 (26%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +++Q  CGS WA   V  +     I + G+  + LS  +L+ C  +  + GC GG+   
Sbjct: 15  PVKNQNPCGSCWAFSTVATIEGINKIIT-GQL-ISLSEQELLDC--ERRSHGCDGGYQTT 70

Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           + +Y V  G+ +   Y       PYE             C+  +   P+        Y  
Sbjct: 71  SLQYVVDNGVHTEREY-------PYE--------KKQGRCRAKDKKGPK-------VYIT 108

Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGP 290
            Y+           +PAN+E  + +   + PV  S+   +       YK GIY+    GP
Sbjct: 109 GYKY----------VPANDEISLIQAIANQPV--SVVTDSRGRGFQFYKGGIYE----GP 152

Query: 291 LGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            G    HA+  +G+G+            Y L+ NS+  NWGE G  RI
Sbjct: 153 CGTNTDHAVTAVGYGK-----------TYLLLKNSWGPNWGEKGYIRI 189

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 52/158 (32%)

Query: 339 PYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM 398
           PYE          +  C+A +   P+        Y   Y+           +PAN+E  +
Sbjct: 87  PYE--------KKQGRCRAKDKKGPK-------VYITGYKY----------VPANDEISL 121

Query: 399 REIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGE---HAIRIIGWGQEPLGEGT 452
            +   + PV  S+   +       YK GIY+    GP G    HA+  +G+G+       
Sbjct: 122 IQAIANQPV--SVVTDSRGRGFQFYKGGIYE----GPCGTNTDHAVTAVGYGK------- 168

Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRG----QNECGI 486
                Y L+ NS+  NWGE G  RI R     +  CG+
Sbjct: 169 ----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score = 93.3 bits (233), Expect = 5e-22
 Identities = 62/228 (27%), Positives = 88/228 (38%), Gaps = 56/228 (24%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +R QGSCGS WA  AV  +     I + GK  V LS  +LV C  +  + GC+GG+   
Sbjct: 15  PVRHQGSCGSCWAFSAVATVEGINKIRT-GKL-VELSEQELVDC--ERRSHGCKGGYPPY 70

Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           A +Y    GI     Y       PY+            +C+  +   P            
Sbjct: 71  ALEYVAKNGIHLRSKY-------PYK--------AKQGTCRAKQVGGP-------IVKTS 108

Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGP 290
                         +  N E  +       PV  S+ + +      LYK GI++    GP
Sbjct: 109 GVGR----------VQPNNEGNLLNAIAKQPV--SVVVESKGRPFQLYKGGIFE----GP 152

Query: 291 LGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            G    HA+  +G+G+     G      Y L+ NS+ T WGE G  RI
Sbjct: 153 CGTKVDHAVTAVGYGKS---GGK----GYILIKNSWGTAWGEKGYIRI 193

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score = 64.8 bits (159), Expect = 4e-12
 Identities = 37/158 (23%), Positives = 56/158 (35%), Gaps = 48/158 (30%)

Query: 339 PYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM 398
           PY+          + +C+A +   P                          +  N E  +
Sbjct: 87  PYK--------AKQGTCRAKQVGGP-------IVKTSGVGR----------VQPNNEGNL 121

Query: 399 REIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGE---HAIRIIGWGQEPLGEGT 452
                  PV  S+ + +      LYK GI++    GP G    HA+  +G+G+     G 
Sbjct: 122 LNAIAKQPV--SVVVESKGRPFQLYKGGIFE----GPCGTKVDHAVTAVGYGKS---GGK 172

Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQN----ECGI 486
                Y L+ NS+ T WGE G  RI R        CG+
Sbjct: 173 ----GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 206

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score = 93.3 bits (233), Expect = 5e-22
 Identities = 61/229 (26%), Positives = 94/229 (41%), Gaps = 52/229 (22%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +++QGSCGS W      A+   V IA+ GK  + L+   LV C ++  N GCQGG   +
Sbjct: 16  PVKNQGSCGSCWTFSTTGALESAVAIAT-GKM-LSLAEQQLVDCAQNFNNHGCQGGLPSQ 73

Query: 174 AWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYD 232
           A++Y     GI+   TY       PY+        G    C+                + 
Sbjct: 74  AFEYIRYNKGIMGEDTY-------PYK--------GQDDHCKFQPDKAI--------AFV 110

Query: 233 VSYEDDLNFGRIAYSLPAN-EETIMREIFRHGPVEGSMTIYA--DMILYKTGIYKHVAGG 289
               +          +  N EE ++  +  + PV  S       D ++Y+ GIY   +  
Sbjct: 111 KDVAN----------ITMNDEEAMVEAVALYNPV--SFAFEVTNDFLMYRKGIYSSTSCH 158

Query: 290 PLGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
              +   HA+  +G+G+E    G      YW+V NS+   WG NG F I
Sbjct: 159 KTPDKVNHAVLAVGYGEE---NGI----PYWIVKNSWGPQWGMNGYFLI 200

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score = 74.0 bits (183), Expect = 2e-15
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 14/99 (14%)

Query: 393 NEETIMREIFRHGPVEGSMTIYA--DMILYKTGIYKHVAGGPLGE---HAIRIIGWGQEP 447
           +EE ++  +  + PV  S       D ++Y+ GIY   +     +   HA+  +G+G+E 
Sbjct: 120 DEEAMVEAVALYNPV--SFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEE- 176

Query: 448 LGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGI 486
              G      YW+V NS+   WG NG F I RG+N CG+
Sbjct: 177 --NGI----PYWIVKNSWGPQWGMNGYFLIERGKNMCGL 209

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score = 91.8 bits (229), Expect = 2e-21
 Identities = 54/225 (24%), Positives = 87/225 (38%), Gaps = 47/225 (20%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA 174
            ++DQG CGS WA  A+  +  +  +A        LS   LVSC K   +GC GG    A
Sbjct: 15  AVKDQGQCGSCWAFSAIGNVECQWFLAG-HPL-TNLSEQMLVSCDKTD-SGCSGGLMNNA 71

Query: 175 WKYWVTT---GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
           +++ V      + +  +Y       PY         G    C  +               
Sbjct: 72  FEWIVQENNGAVYTEDSY-------PYA-----SGEGISPPCTTS--------GHTVGAT 111

Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGP 290
              + +          LP +E  I   +  +GPV  ++ + A   + Y  G+        
Sbjct: 112 ITGHVE----------LPQDEAQIAAWLAVNGPV--AVAVDASSWMTYTGGVMTSCVSEQ 159

Query: 291 LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           L +H + ++G+         S+ V YW++ NS+ T WGE G  RI
Sbjct: 160 L-DHGVLLVGYN-------DSAAVPYWIIKNSWTTQWGEEGYIRI 196

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score = 78.3 bits (194), Expect = 7e-17
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 11/98 (11%)

Query: 390 LPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPL 448
           LP +E  I   +  +GPV  ++ + A   + Y  G+        L +H + ++G+     
Sbjct: 118 LPQDEAQIAAWLAVNGPV--AVAVDASSWMTYTGGVMTSCVSEQL-DHGVLLVGYN---- 170

Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGI 486
               S+ V YW++ NS+ T WGE G  RI +G N+C +
Sbjct: 171 ---DSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLV 205

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score = 91.4 bits (228), Expect = 2e-21
 Identities = 60/228 (26%), Positives = 85/228 (37%), Gaps = 60/228 (26%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +++QGSCGS WA  AV  +   + I + G    + S  +L+ C  D  + GC GG+   
Sbjct: 15  PVKNQGSCGSCWAFSAVVTIEGIIKIRT-GNL-NQYSEQELLDC--DRRSYGCNGGYPWS 70

Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           A +     GI    TY       PYE        G    C+  E                
Sbjct: 71  ALQLVAQYGIHYRNTY-------PYE--------GVQRYCRSREKGPYA-------AKTD 108

Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGP 290
                         +    E  +     + PV  S+ + A   D  LY+ GI+     GP
Sbjct: 109 GVRQ----------VQPYNEGALLYSIANQPV--SVVLEAAGKDFQLYRGGIFV----GP 152

Query: 291 LGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            G    HA+  +G+G             Y L+ NS+ T WGENG  RI
Sbjct: 153 CGNKVDHAVAAVGYGP-----------NYILIKNSWGTGWGENGYIRI 189

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score = 63.2 bits (155), Expect = 1e-11
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 27/109 (24%)

Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGE---HAIRII 441
             +    E  +     + PV  S+ + A   D  LY+ GI+     GP G    HA+  +
Sbjct: 111 RQVQPYNEGALLYSIANQPV--SVVLEAAGKDFQLYRGGIFV----GPCGNKVDHAVAAV 164

Query: 442 GWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQN----ECGI 486
           G+G             Y L+ NS+ T WGENG  RI RG       CG+
Sbjct: 165 GYGP-----------NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score = 93.9 bits (234), Expect = 3e-21
 Identities = 74/294 (25%), Positives = 110/294 (37%), Gaps = 77/294 (26%)

Query: 57  NALSKLTLSE-LEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINW-------P 108
           N  + L+  E  E  +G   D+ + Q+       +++ +  LPE  D    W       P
Sbjct: 68  NEFADLSNDEFNEKYVGSLIDATIEQSYDEEF--INEDIVNLPENVD----WRKKGAVTP 121

Query: 109 YCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQ 167
                  +R QGSCGS WA  AV  +     I + GK  V LS  +LV C  +  + GC+
Sbjct: 122 -------VRHQGSCGSCWAFSAVATVEGINKIRT-GKL-VELSEQELVDC--ERRSHGCK 170

Query: 168 GGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKC 227
           GG+   A +Y    GI     Y       PY+            +C+  +   P      
Sbjct: 171 GGYPPYALEYVAKNGIHLRSKY-------PYK--------AKQGTCRAKQVGGPI----- 210

Query: 228 QPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYK 284
                               +  N E  +       PV  S+ + +      LYK GI++
Sbjct: 211 --VKTSGVGR----------VQPNNEGNLLNAIAKQPV--SVVVESKGRPFQLYKGGIFE 256

Query: 285 HVAGGPLGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
               GP G     A+  +G+G+     G      Y L+ NS+ T WGE G  RI
Sbjct: 257 ----GPCGTKVDGAVTAVGYGKS---GGK----GYILIKNSWGTAWGEKGYIRI 299

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score = 63.0 bits (154), Expect = 5e-11
 Identities = 36/158 (22%), Positives = 55/158 (34%), Gaps = 48/158 (30%)

Query: 339 PYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM 398
           PY+          + +C+A +   P                          +  N E  +
Sbjct: 193 PYK--------AKQGTCRAKQVGGPI-------VKTSGVGR----------VQPNNEGNL 227

Query: 399 REIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGE---HAIRIIGWGQEPLGEGT 452
                  PV  S+ + +      LYK GI++    GP G     A+  +G+G+     G 
Sbjct: 228 LNAIAKQPV--SVVVESKGRPFQLYKGGIFE----GPCGTKVDGAVTAVGYGKS---GGK 278

Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQN----ECGI 486
                Y L+ NS+ T WGE G  RI R        CG+
Sbjct: 279 ----GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 312

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score = 91.0 bits (227), Expect = 3e-21
 Identities = 59/229 (25%), Positives = 88/229 (38%), Gaps = 62/229 (27%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +R+QG CGS W   +V A+     I + G+  + LS  +L+ C  +  + GC+GGF   
Sbjct: 15  PVRNQGGCGSCWTFSSVAAVEGINKIVT-GQL-LSLSEQELLDC--ERRSYGCRGGFPLY 70

Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           A +Y   +GI     Y       PYE        G    C+ ++   P            
Sbjct: 71  ALQYVANSGIHLRQYY-------PYE--------GVQRQCRASQAKGP--------KVKT 107

Query: 234 S-YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGG 289
                          +P N E  + +     PV  S+ + A       Y+ GI+     G
Sbjct: 108 DGVGR----------VPRNNEQALIQRIAIQPV--SIVVEAKGRAFQNYRGGIFA----G 151

Query: 290 PLGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           P G    HA+  +G+G             Y L+ NS+ T WGE G  RI
Sbjct: 152 PCGTSIDHAVAAVGYGN-----------DYILIKNSWGTGWGEGGYIRI 189

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score = 63.2 bits (155), Expect = 1e-11
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 27/109 (24%)

Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGE---HAIRII 441
             +P N E  + +     PV  S+ + A       Y+ GI+     GP G    HA+  +
Sbjct: 111 GRVPRNNEQALIQRIAIQPV--SIVVEAKGRAFQNYRGGIFA----GPCGTSIDHAVAAV 164

Query: 442 GWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG----QNECGI 486
           G+G             Y L+ NS+ T WGE G  RI RG    Q  CG+
Sbjct: 165 GYGN-----------DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGV 202

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score = 91.9 bits (229), Expect = 4e-21
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 44/225 (19%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA 174
            ++DQG CGS WA   V ++     I + G   V LS  +L+ C     +GCQGG    A
Sbjct: 18  GVKDQGKCGSCWAFSTVVSVEGINAIRT-GSL-VSLSEQELIDCDTADNDGCQGGLMDNA 75

Query: 175 WKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           ++Y     G+++   Y       PY          +  +C          +      +  
Sbjct: 76  FEYIKNNGGLITEAAY-------PYR--------AARGTCNVARAAQNSPV----VVHID 116

Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGP 290
            ++D          +PAN E  +     + PV  S+ + A     + Y  G++    G  
Sbjct: 117 GHQD----------VPANSEEDLARAVANQPV--SVAVEASGKAFMFYSEGVFTGECGTE 164

Query: 291 LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           L +H + ++G+G    G+       YW V NS+  +WGE G  R+
Sbjct: 165 L-DHGVAVVGYGVAEDGK------AYWTVKNSWGPSWGEQGYIRV 202

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 16/104 (15%)

Query: 390 LPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
           +PAN E  +     + PV  S+ + A     + Y  G++    G  L +H + ++G+G  
Sbjct: 121 VPANSEEDLARAVANQPV--SVAVEASGKAFMFYSEGVFTGECGTEL-DHGVAVVGYGVA 177

Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQN----ECGI 486
             G+       YW V NS+  +WGE G  R+ +        CGI
Sbjct: 178 EDGK------AYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGI 215

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score = 91.1 bits (227), Expect = 5e-21
 Identities = 61/229 (26%), Positives = 91/229 (39%), Gaps = 55/229 (24%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA 174
            ++DQG CGS WA   + A+     I +  K  V LS  +LV C  D   GC GG    A
Sbjct: 16  SVKDQGQCGSCWAFSTIVAVEGINQIKT-NKL-VSLSEQELVDCDTDQNQGCNGGLMDYA 73

Query: 175 WKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           +++     GI +   Y       PYE            +C  +        ++  P   +
Sbjct: 74  FEFIKQRGGITTEANY-------PYE--------AYDGTCDVS--------KENAPAVSI 110

Query: 234 S-YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGG 289
             +E+          +P N+E  + +   + PV  S+ I A   D   Y  G++     G
Sbjct: 111 DGHEN----------VPENDENALLKAVANQPV--SVAIDAGGSDFQFYSEGVFT----G 154

Query: 290 PLGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
             G    H + I+G+G    G       KYW V NS+   WGE G  R+
Sbjct: 155 SCGTELDHGVAIVGYGTTIDGT------KYWTVKNSWGPEWGEKGYIRM 197

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score = 64.1 bits (157), Expect = 8e-12
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 22/107 (20%)

Query: 390 LPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGE---HAIRIIGW 443
           +P N+E  + +   + PV  S+ I A   D   Y  G++     G  G    H + I+G+
Sbjct: 116 VPENDENALLKAVANQPV--SVAIDAGGSDFQFYSEGVFT----GSCGTELDHGVAIVGY 169

Query: 444 GQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG----QNECGI 486
           G    G       KYW V NS+   WGE G  R+ RG    +  CGI
Sbjct: 170 GTTIDGT------KYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGI 210

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score = 90.7 bits (226), Expect = 5e-21
 Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 56/228 (24%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +++QG+CGS WA   +  +     I + G   + LS  +LV C  D  + GC+GG+   
Sbjct: 15  PVKNQGACGSCWAFSTIATVEGINKIVT-GNL-LELSEQELVDC--DKHSYGCKGGYQTT 70

Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           + +Y    G+ +   Y       PY+             C+  +   P+           
Sbjct: 71  SLQYVANNGVHTSKVY-------PYQ--------AKQYKCRATDKPGPK-------VKIT 108

Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGP 290
            Y+           +P+N ET       + P+  S+ + A      LYK+G++     GP
Sbjct: 109 GYKR----------VPSNCETSFLGALANQPL--SVLVEAGGKPFQLYKSGVFD----GP 152

Query: 291 LGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            G    HA+  +G+G     +G      Y ++ NS+  NWGE G  R+
Sbjct: 153 CGTKLDHAVTAVGYGTS---DGK----NYIIIKNSWGPNWGEKGYMRL 193

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 48/158 (30%)

Query: 339 PYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM 398
           PY+          +  C+A +   P+            Y+           +P+N ET  
Sbjct: 87  PYQ--------AKQYKCRATDKPGPK-------VKITGYKR----------VPSNCETSF 121

Query: 399 REIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGE---HAIRIIGWGQEPLGEGT 452
                + P+  S+ + A      LYK+G++     GP G    HA+  +G+G     +G 
Sbjct: 122 LGALANQPL--SVLVEAGGKPFQLYKSGVFD----GPCGTKLDHAVTAVGYGTS---DGK 172

Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRG----QNECGI 486
                Y ++ NS+  NWGE G  R+ R     Q  CG+
Sbjct: 173 ----NYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGV 206

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score = 89.8 bits (224), Expect = 8e-21
 Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 58/230 (25%)

Query: 115 EIRDQGSCGSGWA---LGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGF 170
           +++DQG CGS WA    G VE               + LS  +L+ C  D  +  C GG 
Sbjct: 15  KVKDQGMCGSCWAFSVTGNVEGQ-----WFLNQGTLLSLSEQELLDC--DKMDKACMGGL 67

Query: 171 HGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQP 229
              A+       G+ +   Y        Y+        G   SCQ +         +   
Sbjct: 68  PSNAYSAIKNLGGLETEDDY-------SYQ--------GHMQSCQFS--------AEKAK 104

Query: 230 GYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAG 288
            Y     +          L  NE+ +   + + GP+  S+ I A  M  Y+ GI + +  
Sbjct: 105 VYIQDSVE----------LSQNEQKLAAWLAKRGPI--SVAINAFGMQFYRHGISRPLRP 152

Query: 289 --GPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
              P   +HA+ ++G+GQ            +W + NS+ T+WGE G + +
Sbjct: 153 LCSPWLIDHAVLLVGYGQR---SDV----PFWAIKNSWGTDWGEKGYYYL 195

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score = 77.1 bits (191), Expect = 2e-16
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 13/103 (12%)

Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAG--GPLG-EHAIRIIGW 443
             L  NE+ +   + + GP+  S+ I A  M  Y+ GI + +     P   +HA+ ++G+
Sbjct: 111 VELSQNEQKLAAWLAKRGPI--SVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGY 168

Query: 444 GQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGI 486
           GQ            +W + NS+ T+WGE G + + RG   CG+
Sbjct: 169 GQR---SDV----PFWAIKNSWGTDWGEKGYYYLHRGSGACGV 204

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A Length = 220

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 41/157 (26%), Positives = 59/157 (37%), Gaps = 47/157 (29%)

Query: 339 PYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM 398
           PY              C  +                 +YE+          +P N E  +
Sbjct: 90  PYT--------AEEGQCNLDLQQEKY-------VSIDTYEN----------VPYNNEWAL 124

Query: 399 REIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGE---HAIRIIGWGQEPLGEGT 452
           +    + PV  S+ + A   +   Y +GI+     GP G    HA+ I+G+G E    G 
Sbjct: 125 QTAVAYQPV--SVALEAAGYNFQHYSSGIFT----GPCGTAVDHAVTIVGYGTE---GGI 175

Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRG---QNECGI 486
                YW+V NS+ T WGE G  RI R      +CGI
Sbjct: 176 ----DYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 62/228 (27%), Positives = 95/228 (41%), Gaps = 48/228 (21%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA 174
           +++ QG CGSGWA  A  A+     IA+ G   V LS  +L+ C  +   GC  G+H ++
Sbjct: 16  KVKFQGQCGSGWAFSATGAIEAAHAIAT-GNL-VSLSEQELIDCVDES-EGCYNGWHYQS 72

Query: 175 WKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           +++ V   GI S   Y       PY+             C+ NE      I      Y V
Sbjct: 73  FEWVVKHGGIASEADY-------PYK--------ARDGKCKANEIQDKVTID----NYGV 113

Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLG 292
               + +         +  E+ ++      P+  S++I A D   Y  GIY    GG   
Sbjct: 114 QILSNES-------TESEAESSLQSFVLEQPI--SVSIDAKDFHFYSGGIYD---GGNCS 161

Query: 293 E-----HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                 H + I+G+G E   +G      YW+  NS+  +WG +G  RI
Sbjct: 162 SPYGINHFVLIVGYGSE---DGV----DYWIAKNSWGEDWGIDGYIRI 202

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 41/158 (25%)

Query: 339 PYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM 398
           PY+             C+ANE      I      Y V    + +         +  E+ +
Sbjct: 89  PYK--------ARDGKCKANEIQDKVTID----NYGVQILSNES-------TESEAESSL 129

Query: 399 REIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGE-----HAIRIIGWGQEPLGEGT 452
           +      P+  S++I A D   Y  GIY    GG         H + I+G+G E   +G 
Sbjct: 130 QSFVLEQPI--SVSIDAKDFHFYSGGIYD---GGNCSSPYGINHFVLIVGYGSE---DGV 181

Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNE----CGI 486
                YW+  NS+  +WG +G  RI R        CG+
Sbjct: 182 ----DYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGM 215

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score = 91.5 bits (228), Expect = 2e-20
 Identities = 70/295 (23%), Positives = 107/295 (36%), Gaps = 70/295 (23%)

Query: 57  NALSKLTLSE-LEMRMGVHPDSKLPQNRLPLLVQ---LSDPLEELPEGFDARINW----- 107
           N  + +T  E      G+   + L +N +P+  +     +     P  FD    W     
Sbjct: 72  NLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFD----WRDQGM 127

Query: 108 --PYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNG 165
             P       +++QGSCGS WA  +  A+  ++ IA+       +S   LV C  +   G
Sbjct: 128 VSP-------VKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA-LG 179

Query: 166 CQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECI 224
           C GG+   A+ Y     GI S G Y       PYE         +  +C  +        
Sbjct: 180 CSGGWMNDAFTYVAQNGGIDSEGAY-------PYE--------MADGNCHYDPNQVA--- 221

Query: 225 RKCQPGYDVSYEDDLNFGRIAYSLPA-NEETIMREIFRHGPVEGSMTIYA--DMILYKTG 281
                     Y            L   +E  +   +   GPV  ++   A      Y  G
Sbjct: 222 -----ARLSGYVY----------LSGPDENMLADMVATKGPV--AVAFDADDPFGSYSGG 264

Query: 282 IYKHVAGGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           +Y +         HA+ I+G+G E    G      YWLV NS+   WG +G F+I
Sbjct: 265 VYYNPTCETNKFTHAVLIVGYGNE---NGQ----DYWLVKNSWGDGWGLDGYFKI 312

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 393 NEETIMREIFRHGPVEGSMTIYA--DMILYKTGIYKHVAGGPLG-EHAIRIIGWGQEPLG 449
           +E  +   +   GPV  ++   A      Y  G+Y +         HA+ I+G+G E   
Sbjct: 234 DENMLADMVATKGPV--AVAFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNE--- 288

Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
            G      YWLV NS+   WG +G F+I R   N CGI
Sbjct: 289 NGQ----DYWLVKNSWGDGWGLDGYFKIARNANNHCGI 322

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A* Length = 222

 Score = 64.5 bits (158), Expect = 5e-12
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 391 PANEETIMREIFR-HGPVEGSMTIYA----DMILYKTGIYKHVAGGPLG-EHAIRIIGWG 444
           P N   I   + + H  +  ++ I          Y          G     HA+ I+G+ 
Sbjct: 121 PPNANKIREALAQTHSAI--AVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYS 178

Query: 445 QEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGI 486
                   +  V YW+V NS++TNWG+NG        +   I
Sbjct: 179 -------NAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMI 213

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score = 86.9 bits (216), Expect = 7e-20
 Identities = 54/224 (24%), Positives = 80/224 (35%), Gaps = 54/224 (24%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +++QGSCGS WA   V  +     I + G   + LS  +LV C  D  N GC GG    
Sbjct: 15  PVKNQGSCGSCWAFSTVSTVESINQIRT-GNL-ISLSEQELVDC--DKKNHGCLGGAFVF 70

Query: 174 AWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYD 232
           A++Y +   GI +   Y       PY+             CQ                  
Sbjct: 71  AYQYIINNGGIDTQANY-------PYK--------AVQGPCQAASKVV----------SI 105

Query: 233 VSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPL 291
             Y            +P   E  +++     P   ++    A    Y +GI+    G  L
Sbjct: 106 DGYNG----------VPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKL 155

Query: 292 GEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
             H + I+G+              YW+V NS+   WGE G  R+
Sbjct: 156 -NHGVTIVGYQA-----------NYWIVRNSWGRYWGEKGYIRM 187

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score = 66.5 bits (163), Expect = 9e-13
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 15/100 (15%)

Query: 390 LPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPL 448
           +P   E  +++     P   ++    A    Y +GI+    G  L  H + I+G+     
Sbjct: 111 VPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKL-NHGVTIVGYQA--- 166

Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVR--GQNECGI 486
                    YW+V NS+   WGE G  R++R  G   CGI
Sbjct: 167 --------NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGI 198

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score = 89.2 bits (222), Expect = 9e-20
 Identities = 60/289 (20%), Positives = 86/289 (29%), Gaps = 61/289 (21%)

Query: 57  NALSKLTLSEL-EMRMGVHPDSKL--PQNRLPLLVQLSDPLEELPEGFDARINWPYCPTI 113
           N LS L+L E     +      +    Q  L             P   D R       T 
Sbjct: 47  NHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMR--TVT- 103

Query: 114 QEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGK 173
             IR QG CGS WA   V A           +  + L+  +LV C     +GC G    +
Sbjct: 104 -PIRMQGGCGSAWAFSGVAATESAYLAYR-DQ-SLDLAEQELVDCASQ--HGCHGDTIPR 158

Query: 174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
             +Y    G+V    Y        Y             SC+                   
Sbjct: 159 GIEYIQHNGVVQESYY-------RYV--------AREQSCRRPNAQR---------FGIS 194

Query: 234 SYEDDLNFGRIAYSLPANEETIMRE--IFRHGPVEGSMTIYA----DMILYKTGIYKHVA 287
           +Y            +       +RE     H  +  ++ I          Y         
Sbjct: 195 NYCQ----------IYPPNANKIREALAQTHSAI--AVIIGIKDLDAFRHYDGRTIIQRD 242

Query: 288 GGPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            G     HA+ I+G+         +  V YW+V NS++TNWG+NG    
Sbjct: 243 NGYQPNYHAVNIVGYS-------NAQGVDYWIVRNSWDTNWGDNGYGYF 284

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score = 65.7 bits (161), Expect = 5e-12
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 391 PANEETIMREIFR-HGPVEGSMTIYA----DMILYKTGIYKHVAGGPLG-EHAIRIIGWG 444
           P N   I   + + H  +  ++ I          Y          G     HA+ I+G+ 
Sbjct: 201 PPNANKIREALAQTHSAI--AVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYS 258

Query: 445 QEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGI 486
                   +  V YW+V NS++TNWG+NG        +   I
Sbjct: 259 -------NAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMI 293

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 68/286 (23%), Positives = 112/286 (39%), Gaps = 58/286 (20%)

Query: 57  NALSKLTLSEL-EMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQE 115
           N L  +T  E+ +   G+       ++   L +   +     P+  D    +     +  
Sbjct: 61  NHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYI--PEWEGRAPDSVD----YRKKGYVTP 114

Query: 116 IRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAW 175
           +++QG CGS WA  +V A+  ++   + GK  + LS  +LV C  +  +GC GG+   A+
Sbjct: 115 VKNQGQCGSCWAFSSVGALEGQLKKKT-GKL-LNLSPQNLVDCVSEN-DGCGGGYMTNAF 171

Query: 176 KYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVS 234
           +Y     GI S   Y       PY         G   SC  N                  
Sbjct: 172 QYVQKNRGIDSEDAY-------PYV--------GQEESCMYNPTGKA--------AKCRG 208

Query: 235 YEDDLNFGRIAYSLPA-NEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGP 290
           Y +          +P  NE+ + R + R GPV  S+ I A       Y  G+Y   +   
Sbjct: 209 YRE----------IPEGNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNS 256

Query: 291 LG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
               HA+  +G+G +   +G     K+W++ NS+  NWG  G   +
Sbjct: 257 DNLNHAVLAVGYGIQ---KGN----KHWIIKNSWGENWGNKGYILM 295

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 14/99 (14%)

Query: 393 NEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLG-EHAIRIIGWGQEPL 448
           NE+ + R + R GPV  S+ I A       Y  G+Y   +       HA+  +G+G +  
Sbjct: 216 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-- 271

Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
            +G     K+W++ NS+  NWG  G   + R + N CGI
Sbjct: 272 -KGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI 305

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score = 86.0 bits (214), Expect = 2e-19
 Identities = 64/230 (27%), Positives = 96/230 (41%), Gaps = 60/230 (26%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            +++QG CGS WA   V A+     I + G   + LS   LV C     N GC+GG+   
Sbjct: 17  PVKNQGGCGSCWAFSTVAAVEGINQIVT-GDL-ISLSEQQLVDC--TTANHGCRGGWMNP 72

Query: 174 AWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPG-Y 231
           A+++ V   GI S  TY       PY         G    C               P   
Sbjct: 73  AFQFIVNNGGINSEETY-------PYR--------GQDGICNST---------VNAPVVS 108

Query: 232 DVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAG 288
             SYE+          +P++ E  +++   + PV  S+T+ A   D  LY++GI+     
Sbjct: 109 IDSYEN----------VPSHNEQSLQKAVANQPV--SVTMDAAGRDFQLYRSGIFT---- 152

Query: 289 GPLGE---HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           G       HA+ ++G+G E           +W+V NS+  NWGE+G  R 
Sbjct: 153 GSCNISANHALTVVGYGTE---NDK----DFWIVKNSWGKNWGESGYIRA 195

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 23/107 (21%)

Query: 390 LPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGE---HAIRIIGW 443
           +P++ E  +++   + PV  S+T+ A   D  LY++GI+     G       HA+ ++G+
Sbjct: 115 VPSHNEQSLQKAVANQPV--SVTMDAAGRDFQLYRSGIFT----GSCNISANHALTVVGY 168

Query: 444 GQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE----CGI 486
           G E           +W+V NS+  NWGE+G  R  R        CGI
Sbjct: 169 GTE---NDK----DFWIVKNSWGKNWGESGYIRAERNIENPDGKCGI 208

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score = 84.9 bits (211), Expect = 5e-19
 Identities = 56/225 (24%), Positives = 87/225 (38%), Gaps = 51/225 (22%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA 174
            I++Q  CGS WA  AV A+     I + G+  + LS  +LV C     +GC GG+   A
Sbjct: 15  SIKNQKQCGSCWAFSAVAAVESINKIRT-GQL-ISLSEQELVDCDTAS-HGCNGGWMNNA 71

Query: 175 WKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           ++Y +T  GI +   Y       PY             SC+                   
Sbjct: 72  FQYIITNGGIDTQQNY-------PYS--------AVQGSCKPYRLRV---------VSIN 107

Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGP 290
            ++           +  N E+ ++      PV  S+T+ A       Y +GI+    G  
Sbjct: 108 GFQR----------VTRNNESALQSAVASQPV--SVTVEAAGAPFQHYSSGIFTGPCGTA 155

Query: 291 LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
              H + I+G+G +    G      YW+V NS+  NWG  G   +
Sbjct: 156 Q-NHGVVIVGYGTQ---SGK----NYWIVRNSWGQNWGNQGYIWM 192

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score = 61.0 bits (149), Expect = 6e-11
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 17/104 (16%)

Query: 390 LPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
           +  N E+ ++      PV  S+T+ A       Y +GI+    G     H + I+G+G +
Sbjct: 112 VTRNNESALQSAVASQPV--SVTVEAAGAPFQHYSSGIFTGPCGTAQ-NHGVVIVGYGTQ 168

Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQN----ECGI 486
               G      YW+V NS+  NWG  G   + R        CGI
Sbjct: 169 ---SGK----NYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGI 205

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score = 84.9 bits (211), Expect = 5e-19
 Identities = 55/227 (24%), Positives = 88/227 (38%), Gaps = 50/227 (22%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            ++DQ  CGS WA     A+    C  + GK  V LS  +L+ C +  GN  C GG    
Sbjct: 21  PVKDQRDCGSCWAFSTTGALEGAHCAKT-GKL-VSLSEQELMDCSRAEGNQSCSGGEMND 78

Query: 174 AWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYD 232
           A++Y + + GI S   Y       PY              C+            C+    
Sbjct: 79  AFQYVLDSGGICSEDAY-------PYL--------ARDEECRAQ---------SCEKVVK 114

Query: 233 VS-YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAG 288
           +  ++D          +P   E  M+      PV  S+ I A       Y  G++    G
Sbjct: 115 ILGFKD----------VPRRSEAAMKAALAKSPV--SIAIEADQMPFQFYHEGVFDASCG 162

Query: 289 GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
             L +H + ++G+G +       S   +W++ NS+ T WG +G   +
Sbjct: 163 TDL-DHGVLLVGYGTDK-----ESKKDFWIMKNSWGTGWGRDGYMYM 203

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 14/103 (13%)

Query: 390 LPANEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
           +P   E  M+      PV  S+ I A       Y  G++    G  L +H + ++G+G +
Sbjct: 121 VPRRSEAAMKAALAKSPV--SIAIEADQMPFQFYHEGVFDASCGTDL-DHGVLLVGYGTD 177

Query: 447 PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG---QNECGI 486
                  S   +W++ NS+ T WG +G   +      + +CG+
Sbjct: 178 K-----ESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGL 215

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score = 84.5 bits (210), Expect = 7e-19
 Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 53/228 (23%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA 174
            +++QG CGS WA  +V A+  ++   + GK  + LS  +LV C  +  +GC GG+   A
Sbjct: 15  PVKNQGQCGSCWAFSSVGALEGQLKKKT-GKL-LNLSPQNLVDCVSEN-DGCGGGYMTNA 71

Query: 175 WKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPG-YD 232
           ++Y     GI S   Y       PY         G   SC  N                 
Sbjct: 72  FQYVQKNRGIDSEDAY-------PYV--------GQEESCMYN---------PTGKAAKC 107

Query: 233 VSYEDDLNFGRIAYSLPAN-EETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAG 288
             Y +          +P   E+ + R + R GPV  S+ I A       Y  G+Y   + 
Sbjct: 108 RGYRE----------IPEGNEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESC 155

Query: 289 GPLG-EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                 HA+  +G+G +   +G     K+W++ NS+  NWG  G   +
Sbjct: 156 NSDNLNHAVLAVGYGIQ---KGN----KHWIIKNSWGENWGNKGYILM 196

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 14/99 (14%)

Query: 393 NEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLG-EHAIRIIGWGQEPL 448
           NE+ + R + R GPV  S+ I A       Y  G+Y   +       HA+  +G+G +  
Sbjct: 117 NEKALKRAVARVGPV--SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-- 172

Query: 449 GEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
            +G     K+W++ NS+  NWG  G   + R + N CGI
Sbjct: 173 -KGN----KHWIIKNSWGENWGNKGYILMARNKNNACGI 206

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score = 83.4 bits (207), Expect = 3e-18
 Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 50/229 (21%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGK 173
            ++DQ +CGS WA  ++ ++  +  I    K  + LS  +LV C     N GC GG    
Sbjct: 32  PVKDQKNCGSCWAFSSIGSVESQYAIRK-NK-LITLSEQELVDC--SFKNYGCNGGLINN 87

Query: 174 AWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYD 232
           A++  +   GI   G Y       PY        + + + C  +         +C   Y 
Sbjct: 88  AFEDMIELGGICPDGDY-------PYV-------SDAPNLCNID---------RCTEKYG 124

Query: 233 VS-YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA--DMILYKTGIYKHVAGG 289
           +  Y            +P N+      +   GP+  S+++    D   YK GI+    G 
Sbjct: 125 IKNYLS----------VPDNKL--KEALRFLGPI--SISVAVSDDFAFYKEGIFDGECGD 170

Query: 290 PLGEHAIRIIGWGQE---PLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            L  HA+ ++G+G +              Y+++ NS+   WGE G   I
Sbjct: 171 QL-NHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 218

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 14/108 (12%)

Query: 388 YSLPANEETIMREIFRHGPVEGSMTIYA--DMILYKTGIYKHVAGGPLGEHAIRIIGWGQ 445
            S+P N+      +   GP+  S+++    D   YK GI+    G  L  HA+ ++G+G 
Sbjct: 129 LSVPDNKL--KEALRFLGPI--SISVAVSDDFAFYKEGIFDGECGDQL-NHAVMLVGFGM 183

Query: 446 E---PLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE----CGI 486
           +              Y+++ NS+   WGE G   I   ++     CG+
Sbjct: 184 KEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGL 231

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score = 83.0 bits (206), Expect = 3e-18
 Identities = 50/228 (21%), Positives = 87/228 (38%), Gaps = 48/228 (21%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA 174
            ++DQ  CGS WA  +V ++  +  I          S  +LV C     NGC GG+   A
Sbjct: 34  PVKDQALCGSCWAFSSVGSVESQYAIRK-KA-LFLFSEQELVDCSVKN-NGCYGGYITNA 90

Query: 175 WKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           +   +   G+ S   Y       PY        +    +C            +C   Y +
Sbjct: 91  FDDMIDLGGLCSQDDY-------PYV-------SNLPETCNLK---------RCNERYTI 127

Query: 234 S-YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA--DMILYKTGIYKHVAGGP 290
             Y            +P ++      +   GP+  S++I A  D   Y+ G Y    G  
Sbjct: 128 KSYVS----------IPDDKF--KEALRYLGPI--SISIAASDDFAFYRGGFYDGECGAA 173

Query: 291 LGEHAIRIIGWGQEPLGEGTSSV---VKYWLVANSFNTNWGENGLFRI 335
              HA+ ++G+G + +    +       Y+++ NS+ ++WGE G   +
Sbjct: 174 P-NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINL 220

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score = 64.5 bits (158), Expect = 7e-12
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 14/107 (13%)

Query: 389 SLPANEETIMREIFRHGPVEGSMTIYA--DMILYKTGIYKHVAGGPLGEHAIRIIGWGQE 446
           S+P ++      +   GP+  S++I A  D   Y+ G Y    G     HA+ ++G+G +
Sbjct: 132 SIPDDKF--KEALRYLGPI--SISIAASDDFAFYRGGFYDGECGAAP-NHAVILVGYGMK 186

Query: 447 PLGEGTSSV---VKYWLVANSFNTNWGENGLFRIVRGQNE----CGI 486
            +    +       Y+++ NS+ ++WGE G   +   +N     C I
Sbjct: 187 DIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSI 233

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score = 83.8 bits (208), Expect = 5e-18
 Identities = 72/294 (24%), Positives = 115/294 (39%), Gaps = 74/294 (25%)

Query: 57  NALSKLTLSE-LEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINW-------P 108
           N L  +T  E + +        ++P      +   S+P   LP+  D    W        
Sbjct: 62  NHLGDMTSEEVMSLMSS----LRVPSQWQRNITYKSNPNRILPDSVD----WREKGCVTE 113

Query: 109 YCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCG--NGC 166
                  ++ QGSCG+ WA  AV A+  ++ + + GK  V LS+ +LV C  +     GC
Sbjct: 114 -------VKYQGSCGAAWAFSAVGALEAQLKLKT-GKL-VSLSAQNLVDCSTEKYGNKGC 164

Query: 167 QGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIR 225
            GGF   A++Y +   GI S  +Y       PY+             CQ +         
Sbjct: 165 NGGFMTTAFQYIIDNKGIDSDASY-------PYK--------AMDQKCQYDSKYRA---- 205

Query: 226 KCQPGYDVSYEDDLNFGRIAYSLPAN-EETIMREIFRHGPVEGSMTIYA---DMILYKTG 281
                    Y +          LP   E+ +   +   GPV  S+ + A      LY++G
Sbjct: 206 ----ATCSKYTE----------LPYGREDVLKEAVANKGPV--SVGVDARHPSFFLYRSG 249

Query: 282 IYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           +Y   +      H + ++G+G      G     +YWLV NS+  N+GE G  R+
Sbjct: 250 VYYEPSCTQNVNHGVLVVGYGDL---NGK----EYWLVKNSWGHNFGEEGYIRM 296

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 13/98 (13%)

Query: 393 NEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
            E+ +   +   GPV  S+ + A      LY++G+Y   +      H + ++G+G     
Sbjct: 218 REDVLKEAVANKGPV--SVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL--- 272

Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
            G     +YWLV NS+  N+GE G  R+ R + N CGI
Sbjct: 273 NGK----EYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 306

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score = 80.6 bits (200), Expect = 1e-17
 Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 51/228 (22%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC-GN-GCQGGFHG 172
           E++ QGSCG+ WA  AV A+  ++ + + GK  V LS+ +LV C  +  GN GC GGF  
Sbjct: 16  EVKYQGSCGACWAFSAVGALEAQLKLKT-GKL-VSLSAQNLVDCSTEKYGNKGCNGGFMT 73

Query: 173 KAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGY 231
            A++Y +   GI S  +Y       PY+             CQ +         K +   
Sbjct: 74  TAFQYIIDNKGIDSDASY-------PYK--------AMDQKCQYD--------SKYRAAT 110

Query: 232 DVSYEDDLNFGRIAYSLPAN-EETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVA 287
              Y +          LP   E+ +   +   GPV  S+ + A      LY++G+Y   +
Sbjct: 111 CSKYTE----------LPYGREDVLKEAVANKGPV--SVGVDARHPSFFLYRSGVYYEPS 158

Query: 288 GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                 H + ++G+G      G     +YWLV NS+  N+GE G  R+
Sbjct: 159 CTQNVNHGVLVVGYGDL---NGK----EYWLVKNSWGHNFGEEGYIRM 199

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 13/98 (13%)

Query: 393 NEETIMREIFRHGPVEGSMTIYA---DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLG 449
            E+ +   +   GPV  S+ + A      LY++G+Y   +      H + ++G+G     
Sbjct: 121 REDVLKEAVANKGPV--SVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL--- 175

Query: 450 EGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGI 486
            G     +YWLV NS+  N+GE G  R+ R + N CGI
Sbjct: 176 NGK----EYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 209

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 51/227 (22%), Positives = 83/227 (36%), Gaps = 50/227 (22%)

Query: 115 EIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA 174
            ++DQG+CG  WA GA  A+     I + G+  + +S   +V C         GG    A
Sbjct: 15  SVKDQGACGMCWAFGATGAIEGIDAITT-GRL-ISVSEQQIVDCDTXXXXXX-GGDADDA 71

Query: 175 WKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDV 233
           +++ +T  GI S   Y       PY         G   +C  N+P               
Sbjct: 72  FRWVITNGGIASDANY-------PYT--------GVDGTCDLNKPIAARI---------D 107

Query: 234 SYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YADMILYKT-GIYKHVAGGPL 291
            Y +          +P +   ++  +    PV  ++        LY   GI+   +    
Sbjct: 108 GYTN----------VPNSSSALLDAV-AKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDD 156

Query: 292 G---EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
               +H + I+G+G             YW+V NS+ T WG +G   I
Sbjct: 157 PATVDHTVLIVGYGSNGTNA------DYWIVKNSWGTEWGIDGYILI 197

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score = 58.3 bits (141), Expect = 7e-10
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 389 SLPANEETIMREIFRHGPVEGSMTI-YADMILYKT-GIYKHVAGGPLG---EHAIRIIGW 443
           ++P +   ++  +    PV  ++        LY   GI+   +        +H + I+G+
Sbjct: 111 NVPNSSSALLDAV-AKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGY 169

Query: 444 GQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNE----CGI 486
           G             YW+V NS+ T WG +G   I R  N     C I
Sbjct: 170 GSNGTNA------DYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAI 210

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 63/489 (12%), Positives = 115/489 (23%), Gaps = 174/489 (35%)

Query: 1   MGKSTADAVATFLKDLDLSQSSRNHSNGVF------CD-----------LSKAFD----- 38
            GK+             +          +F      C+           L    D     
Sbjct: 161 SGKTWV--ALDVCLSYKVQ---CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 39  RVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLV--QLSDPLEE 96
           R DHS  +  L    + +  L +L      ++   + +         LLV   + +   +
Sbjct: 216 RSDHSSNIK-LRI-HSIQAELRRL------LKSKPYENC--------LLVLLNVQNA--K 257

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
               F+       C  +   R +              ++D +           +S D   
Sbjct: 258 AWNAFNLS-----CKILLTTRFKQ-------------VTDFL----SAATTTHISLDHH- 294

Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSH------ 210
                                                 CRP ++P E  +  ++      
Sbjct: 295 ----------SMTLTPDE----------VKSLLLKYLDCRPQDLPRE--VLTTNPRRLSI 332

Query: 211 --SSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGS 268
              S +D    T +  +      +    D L    I  SL   E    R++F        
Sbjct: 333 IAESIRDG-LATWDNWKH----VNC---DKLT-TIIESSLNVLEPAEYRKMFD------R 377

Query: 269 MTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWG 328
           ++++                  +    + +I W      +    V K  L   S      
Sbjct: 378 LSVFPP----------SA---HIPTILLSLI-WFDVIKSDVMVVVNK--LHKYSLVEKQP 421

Query: 329 ENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPE---------CIRKCQPGYDVS--Y 377
           +     I      I    Y+       +    N             I K     D+   Y
Sbjct: 422 KESTISI----PSI----YL---ELKVKLE--NEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 378 EDDLNFGRIAYSLPANEET----IMREIF----------RH-----GPVEGSMTIYADMI 418
            D   +  I + L   E      + R +F          RH           +     + 
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528

Query: 419 LYKTGIYKH 427
            YK  I  +
Sbjct: 529 FYKPYICDN 537

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	524
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	100.0
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	100.0
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	100.0
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	100.0
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	100.0
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	100.0
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	100.0
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	100.0
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	100.0
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	100.0
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	100.0
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	100.0
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	100.0
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	100.0
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	100.0
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	100.0
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	100.0
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	100.0
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	100.0
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	100.0
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	100.0
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	100.0
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	100.0
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	100.0
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	100.0
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	100.0
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	100.0
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	100.0
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	100.0
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	100.0
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	100.0
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	100.0
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	100.0
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	100.0
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	100.0
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	100.0
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	100.0
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	100.0
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	100.0
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	100.0
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	100.0
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	100.0
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.97
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	99.95
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	99.95
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	99.95
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	99.95
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	99.95
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	99.95
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	99.95
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	99.94
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	99.94
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	99.94
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	99.94
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	99.94
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	99.94
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	99.94
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	99.94
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	99.94
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	99.94
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	99.94
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	99.94
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	99.94
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	99.93
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	99.93
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	99.93
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	99.93
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	99.93
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	99.93
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	99.93
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	99.93
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	99.93
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	99.92
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	99.92
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	99.92
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	99.92
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	99.92
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	99.92
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	99.91
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	99.91
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	99.9
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	99.89
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	99.84
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	99.7
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	99.68
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	99.43
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	99.36
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.28
1pxv_A	183	Cysteine protease; hydrolase; 1.80A {Staphylococcu	97.08
1cv8_A	174	Staphopain; cysteine protease, thiol protease, pap	96.73
1x9y_A	367	Cysteine proteinase; half-barrel, barrel-sandwich-	96.41

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=100.00  E-value=1.8e-72  Score=569.40  Aligned_cols=303  Identities=48%  Similarity=1.015  Sum_probs=257.1

Q ss_pred             hhhhhhhcCCCCccccccccccccchHHHHHHHhCCCCCCCCCCCCCCcccccCCCCCCCCCccccccCCCCCCCCccCC
Q psy1664          38 DRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIR  117 (524)
Q Consensus        38 ~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvk  117 (524)
                      ++|++||+++  .+|++++| |++++.||+++++|.++...  .  .+.... .....+||++||||++||+|+.|+|||
T Consensus        13 ~~i~~~N~~~--~~~~~~~n-f~~~~~e~~~~~lg~~~~~~--~--~~~~~~-~~~~~~lP~s~DwR~~~~~c~~vtpVk   84 (317)
T 3pbh_A           13 ELVNYVNKRN--TTWQAGHN-FYNVDMSYLKRLCGTFLGGP--K--PPQRVM-FTEDLKLPASFDAREQWPQCPTIKEIR   84 (317)
T ss_dssp             HHHHHHHHHT--CSEEECCC-CSSCCHHHHHHTCCBCTTCC--C--CSEEEC-CCSCCCCCSSEEHHHHCTTCGGGTCCC
T ss_pred             HHHHHHHCCC--CCeEEeec-cccCCHHHHHHHcCCCCCcc--c--cCcccc-cccccCCCCCEechhccCCCCCcCCcc
Confidence            4499999876  79999999 99999999999988764432  1  111111 112357999999999999999999999


Q ss_pred             CCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcC-CCCCCCCCCChHHHHHHHHHhCCccCCccCCCCCcc
Q psy1664         118 DQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCK-DCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCR  196 (524)
Q Consensus       118 dQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~-~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~  196 (524)
                      |||.||||||||++++||++++|+++++..+.||+|+|+||+. ..+.||+||++..||+|++++||++|++|.+.++|+
T Consensus        85 dQg~CGSCWAFsa~~ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~GG~~~~A~~yi~~~Gi~te~~Y~~~~~c~  164 (317)
T 3pbh_A           85 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCR  164 (317)
T ss_dssp             BCCSSCCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGCBCHHHHHHHHHHTCEEBBCSTTCCCBSS
T ss_pred             ccCCccchHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCCCCHHHHHHHHHHhCCCcchhccCCCCCc
Confidence            9999999999999999999999998765579999999999986 456899999999999999999999999999999999


Q ss_pred             ccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEEEeccccc
Q psy1664         197 PYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI  276 (524)
Q Consensus       197 PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~  276 (524)
                      ||...          .|.                                                              
T Consensus       165 PY~~~----------~c~--------------------------------------------------------------  172 (317)
T 3pbh_A          165 PYSIP----------PCE--------------------------------------------------------------  172 (317)
T ss_dssp             CCCSC----------CCC--------------------------------------------------------------
T ss_pred             CcccC----------ccc--------------------------------------------------------------
Confidence            99754          110                                                              


Q ss_pred             ccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccccccccCccCCcCcCCcCCCCCC
Q psy1664         277 LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQ  356 (524)
Q Consensus       277 ~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~~~~~C~  356 (524)
                                                                                           ....+..+.|.
T Consensus       173 ---------------------------------------------------------------------~~~~~~~~~C~  183 (317)
T 3pbh_A          173 ---------------------------------------------------------------------HHVNGSRPPCT  183 (317)
T ss_dssp             ---------------------------------------------------------------------CCCTTCCSCCC
T ss_pred             ---------------------------------------------------------------------ccccCcCCCCC
Confidence                                                                                 00011122444


Q ss_pred             CCCCCCcccccccccCccccccCcceeeeEEEEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCCccCe
Q psy1664         357 ANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEH  436 (524)
Q Consensus       357 ~~~~~~p~C~~~C~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~~~~H  436 (524)
                      . ...++.|...|..++...|..++++....|.++.++++||.+|+++|||+|+|+|+++|++|++|||.++++...++|
T Consensus       184 ~-~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~~~~~~~~H  262 (317)
T 3pbh_A          184 G-EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGH  262 (317)
T ss_dssp             S-CCCCCCCCCSCCSSCCSCGGGSEECBCCCEEECSCHHHHHHHHHHHCCEEEEEEEEGGGGGEEEEEECCCSCCEEEEE
T ss_pred             C-cCCCCcccccccCCCccceeeeeeeeeecccCCcHHHHHHHHHHHCCCEEEEEEecccccCCCCcEEccCCCCCCCCE
Confidence            3 245677888898888877888888888888888899999999999999999999998999999999998876666799


Q ss_pred             eEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCCCcEEEEEeCCCccCccccceecccee
Q psy1664         437 AIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKI  497 (524)
Q Consensus       437 ~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p~~  497 (524)
                      ||+|||||+++       +.+|||||||||++||++|||||+||.|.|||++.+++++|.+
T Consensus       263 aV~iVGyG~~~-------g~~YWivkNSWG~~WGe~GY~ri~rg~n~CgI~~~~~a~~p~~  316 (317)
T 3pbh_A          263 AIRILGWGVEN-------GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRT  316 (317)
T ss_dssp             EEEEEEEEEET-------TEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBCC
T ss_pred             EEEEEEEEEeC-------CeeEEEEEcCCCCCcCCCcEEEEEcCCCcccCCCceEeeecCC
Confidence            99999999887       8999999999999999999999999999999999999999974

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=100.00  E-value=1e-69  Score=551.40  Aligned_cols=301  Identities=24%  Similarity=0.401  Sum_probs=246.5

Q ss_pred             HHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCC--CCccccccccccccchHHHHHHHhC-CCCCCCCCC
Q psy1664           5 TADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLP--KLPFYGAEKNALSKLTLSELEMRMG-VHPDSKLPQ   81 (524)
Q Consensus         5 t~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~--~~~~~~~g~N~fsd~t~eE~~~~~~-~~~~~~~~~   81 (524)
                      ..++|++|+++|+|.|.+.+|...|+.+|.+|+++|++||++.  ...+|++++|+|+|||.|||++++. ........ 
T Consensus        18 l~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~~~~~~~~~~~-   96 (331)
T 3qj3_A           18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTHGLIMPADLH-   96 (331)
T ss_dssp             HHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEECCSTTTTCCHHHHHHHHSCCCCCSSTT-
T ss_pred             HHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeecccccccCCHHHHHHHhcccccccccc-
Confidence            4578999999999999998999999999999999999999862  1379999999999999999998654 33221100 


Q ss_pred             CCCCcccccC-----CCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHH
Q psy1664          82 NRLPLLVQLS-----DPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV  156 (524)
Q Consensus        82 ~~~~~~~~~~-----~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lv  156 (524)
                       .........     ....+||++||||++    |+|+||||||.||||||||++++||++++|+++....+.||+|+|+
T Consensus        97 -~~~~~~~~~~~~~~~~~~~lP~s~DwR~~----g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LSeQ~Lv  171 (331)
T 3qj3_A           97 -KNGIPIKTREDLGLNASVRYPASFDWRDQ----GMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLV  171 (331)
T ss_dssp             -TTCEEECSGGGGTCCSSCCCCSSEEGGGG----TCSCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBCHHHHH
T ss_pred             -ccCcccccccccccccccCCCcceecccC----CccCCCccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcCHHHHh
Confidence             000000000     022479999999999    8999999999999999999999999999999874337999999999


Q ss_pred             hhcCCCCCCCCCCChHHHHHHHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCcccc
Q psy1664         157 SCCKDCGNGCQGGFHGKAWKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSY  235 (524)
Q Consensus       157 dC~~~~~~gC~GG~~~~a~~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~  235 (524)
                      ||+.. +.||+||++..|++|++++ ||++|++|       ||.+.        .+.|........              
T Consensus       172 dC~~~-~~GC~GG~~~~a~~yi~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~~--------------  221 (331)
T 3qj3_A          172 DCVPN-ALGCSGGWMNDAFTYVAQNGGIDSEGAY-------PYEMA--------DGNCHYDPNQVA--------------  221 (331)
T ss_dssp             HHCTT-SCGGGCCCHHHHHHHHHHHTCEEBTTTS-------CCCSS--------CCCCCCCTTSEE--------------
T ss_pred             hhccC-CCCCCCCCHHHHHHHHHHcCCcCccccc-------CccCC--------CCCCCCCcccce--------------
Confidence            99865 7799999999999999998 99999988       99876        667865432111              


Q ss_pred             ccccccceeeeecC-CCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCC-CCCCcEEEEEEeccCCCCCCCccc
Q psy1664         236 EDDLNFGRIAYSLP-ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG-PLGEHAIRIIGWGQEPLGEGTSSV  313 (524)
Q Consensus       236 ~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~-~~~~HaV~iVGyg~~~~~~g~~~g  313 (524)
                      .....|    ..++ .++++||++|+++|||+|+|+++.+|++|++|||..+.|. ..++|||+|||||++       ++
T Consensus       222 ~~i~~~----~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~-------~g  290 (331)
T 3qj3_A          222 ARLSGY----VYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNE-------NG  290 (331)
T ss_dssp             ECCSEE----EEESSCCHHHHHHHHHHHCCEEEEECCCTTGGGEEEEEECCTTCCSSCCCEEEEEEEEEEE-------TT
T ss_pred             eEeeEE----EEeCCCCHHHHHHHHHhCCCEEEEEEcccccccccCceEeCCCCCCCcCCEEEEEEEEecc-------CC
Confidence            011111    2444 4789999999999999999999877999999999998775 578999999999976       57


Q ss_pred             eeEEEEeCCCCCcccccCccccccccCccCCcCcCCcCCC
Q psy1664         314 VKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       314 ~~YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      ++|||||||||++|||+|||||+++.. ..|++.+.+++|
T Consensus       291 ~~yWivkNSWG~~WGe~GY~~i~r~~~-n~CgI~~~~~~p  329 (331)
T 3qj3_A          291 QDYWLVKNSWGDGWGLDGYFKIARNAN-NHCGIAGVASVP  329 (331)
T ss_dssp             EEEEEEECSBCTTSTBTTEEEEECSSS-SGGGTTTSCEEE
T ss_pred             ceEEEEEcCCCCCcCCCCEEEEEcCCC-CccCcCCceeee
Confidence            999999999999999999999999862 369998777655

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=100.00  E-value=1.1e-69  Score=553.92  Aligned_cols=295  Identities=23%  Similarity=0.357  Sum_probs=235.2

Q ss_pred             HHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHHHHHHhCC-CCCCCCCCCC
Q psy1664           5 TADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGV-HPDSKLPQNR   83 (524)
Q Consensus         5 t~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~~~~~-~~~~~~~~~~   83 (524)
                      +.+.|++|+++|+|.|.+.+|...||.+|++|+++|++||++.  .+|++|+|+|+|||.+||++++.. ..... ....
T Consensus        62 ~~~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~--~sy~~g~N~FaDlT~eEf~~~~~~~~~~~~-~~~~  138 (363)
T 3tnx_A           62 LIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKN--NSYWLGLNVFADMSNDEFKEKYTGSIAGNY-TTTE  138 (363)
T ss_dssp             HHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTSC--CSEEECSCTTTTSCHHHHHHHHSCSSCSCC-CCSS
T ss_pred             HHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcCC--CCeEEeccccccCCHHHHHHHhcccccccc-cccc
Confidence            5688999999999999999999999999999999999999987  799999999999999999986543 32211 1111


Q ss_pred             CCcccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCC
Q psy1664          84 LPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCG  163 (524)
Q Consensus        84 ~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~  163 (524)
                      ............+||++||||++    |.|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+.. .
T Consensus       139 ~~~~~~~~~~~~~lP~s~DWR~~----g~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg--~~~~LSeQ~LvdC~~~-~  211 (363)
T 3tnx_A          139 LSYEEVLNDGDVNIPEYVDWRQK----GAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTG--NLNEYSEQELLDCDRR-S  211 (363)
T ss_dssp             SSSSCCCCCSCCCCCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-S
T ss_pred             cccccccCcccCCCCcceecccC----CCCCCCccCCcCCchhhhhhcccHHHHHHHHcC--CCCCcCHHHHhcccCC-C
Confidence            11111122233579999999999    899999999999999999999999999999986  4689999999999754 6


Q ss_pred             CCCCCCChHHHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccce
Q psy1664         164 NGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGR  243 (524)
Q Consensus       164 ~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (524)
                      .||+||++..|++|++++|+++|+.|       ||.+.        .+.|........        ..     ....   
T Consensus       212 ~GC~GG~~~~a~~yi~~~Gi~~e~~y-------PY~~~--------~~~c~~~~~~~~--------~~-----~~~~---  260 (363)
T 3tnx_A          212 YGCNGGYPWSALQLVAQYGIHYRNTY-------PYEGV--------QRYCRSREKGPY--------AA-----KTDG---  260 (363)
T ss_dssp             CTTBCCCHHHHHHHHHHTCBCBTTTS-------CCCSS--------CCCCCGGGGCSC--------SB-----CCCE---
T ss_pred             CCCCCCChHHHHhHHHhcCccccccC-------CCcCc--------CCCcccCCCCCc--------ee-----eccc---
Confidence            79999999999999999999998888       99875        444542211100        00     0001   


Q ss_pred             eeeecCCCHHHHHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCC
Q psy1664         244 IAYSLPANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANS  322 (524)
Q Consensus       244 ~~~~~~~~~~~ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNS  322 (524)
                       ...++...+.++++++.+|||+|+|++. ++|++|++|||..++ ...++|||+|||||+           +|||||||
T Consensus       261 -~~~~~~~~e~~l~~~v~~gPvsvai~a~~~~F~~Y~sGVy~~~~-~~~lnHaV~iVGyG~-----------~YWIVKNS  327 (363)
T 3tnx_A          261 -VRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPC-GNKVDHAVAAVGYGP-----------NYILIRNS  327 (363)
T ss_dssp             -EEEECSSCHHHHHHHHTTSCEEEEECCCSHHHHTEEEEEECCCC-CSCCCEEEEEEEEET-----------TEEEEECS
T ss_pred             -eEEcchhhHHHHHHHHHcCCcEEEEEecchhhhCCCCCEECCCC-CCCCCeEEEEEEcCC-----------CcEEEEeC
Confidence             1233444455566666789999999865 789999999998874 456799999999995           49999999


Q ss_pred             CCCcccccCccccccccCc--cCCcCcCCcCCC
Q psy1664         323 FNTNWGENGLFRIGCRPYE--IPCERYMNGSRS  353 (524)
Q Consensus       323 WG~~WGe~Gy~ri~~~~~~--~~c~~~~~~~~~  353 (524)
                      ||++|||+|||||+|+...  ..||+.+.+++|
T Consensus       328 WGt~WGe~GY~rI~Rg~~~~~~~CGI~~~a~yP  360 (363)
T 3tnx_A          328 WGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYP  360 (363)
T ss_dssp             BCTTSTBTTEEEEECCSCCSSCGGGTTSCEEEE
T ss_pred             CCCccccCcEEEEEcCCCCCCCcCCccceeeec
Confidence            9999999999999998654  469998877665

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=100.00  E-value=6.7e-70  Score=551.49  Aligned_cols=312  Identities=36%  Similarity=0.689  Sum_probs=202.6

Q ss_pred             chhHHhhhhhhhhhcCCCCcccccccc-ccccchHHHHHHHhCCCCCCCCCCCCCCcccccCCCCCCCCCccccccCCCC
Q psy1664          31 CDLSKAFDRVDHSILLPKLPFYGAEKN-ALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPY  109 (524)
Q Consensus        31 ~~f~~nl~~I~~~N~~~~~~~~~~g~N-~fsd~t~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~~~~  109 (524)
                      ....-+.++|++||++++ .+|++++| +|+|||.+||+++++..+....................+||++||||++||+
T Consensus         6 ~a~~~~~~~i~~~N~~~~-~~~~~~~n~~f~dlt~eE~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~w~~   84 (325)
T 3hhi_A            6 DAPVLSKAFVDRVNRLNR-GIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPN   84 (325)
T ss_dssp             ---------------------------------------------------CCSCBCCCCHHHHHCCCCSCEEHHHHSTT
T ss_pred             ccccccHHHHHHHHhCCC-CceEEecccccccCCHHHHHHHhCCCCCCcccccccCccccccccccCCCCcEehhHhcCC
Confidence            334445556999998764 78999999 8999999999998876432210000000000000112479999999999999


Q ss_pred             CCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHHHHHHhCCccCCcc
Q psy1664         110 CPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTY  189 (524)
Q Consensus       110 ~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y  189 (524)
                      |+.|+||||||.||||||||++++||++++|+++. ..+.||+|+|+||+..++.||+||++..||+|++++|+++|+.|
T Consensus        85 ~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~~~-~~~~LSeQ~LvdC~~~~~~GC~GG~~~~A~~yi~~~Gi~~e~~y  163 (325)
T 3hhi_A           85 CPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGV-QDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQ  163 (325)
T ss_dssp             CTTTTCCCBCCSSBCHHHHHHHHHHHHHHHHTSSC-SSCCBCHHHHHHHCGGGBCTTBCBCHHHHHHHHHHTCBCBTTTS
T ss_pred             CCccccccCCCCccccHHHHHHHHHHHHHHHHhCC-CccccCHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCCccccc
Confidence            99999999999999999999999999999999863 36899999999998755689999999999999999999998777


Q ss_pred             CCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEE
Q psy1664         190 ASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM  269 (524)
Q Consensus       190 ~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i  269 (524)
                             ||...          .|.....                                                   
T Consensus       164 -------PY~~~----------~c~~~~~---------------------------------------------------  175 (325)
T 3hhi_A          164 -------PYPFP----------HCSHHSK---------------------------------------------------  175 (325)
T ss_dssp             -------CCSSC----------CCBSSSC---------------------------------------------------
T ss_pred             -------CCccc----------ccccccc---------------------------------------------------
Confidence                   99732          1210000                                                   


Q ss_pred             EecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccccccccCccCCcCcCC
Q psy1664         270 TIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMN  349 (524)
Q Consensus       270 ~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~  349 (524)
                                                        +                      +                      
T Consensus       176 ----------------------------------~----------------------~----------------------  177 (325)
T 3hhi_A          176 ----------------------------------S----------------------K----------------------  177 (325)
T ss_dssp             ----------------------------------C----------------------T----------------------
T ss_pred             ----------------------------------c----------------------c----------------------
Confidence                                              0                      0                      


Q ss_pred             cCCCCCCCCCCCCcccccccccCccccccCcceeeeEEEEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCC
Q psy1664         350 GSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA  429 (524)
Q Consensus       350 ~~~~~C~~~~~~~p~C~~~C~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~  429 (524)
                      +..+.|.......+.|...|...   .+..++++....|.+ .++++||++|+++|||+|+|+|+++|++|++|||..++
T Consensus       178 ~~~~~C~~~~~~~~~c~~~c~~~---~~~~~~~~~~~~y~v-~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~~  253 (325)
T 3hhi_A          178 NGYPPCSQFNFDTPKCDYTCDDP---TIPVVNYRSWTSYAL-QGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVS  253 (325)
T ss_dssp             TCCCBGGGCCCCCCCCCSSCSST---TSCCCCBCEEEEEEE-CSHHHHHHHHHHHCCEEEEEEEEHHHHTCCSSEECCCS
T ss_pred             ccCCCCCCcccCCcchhhccccc---ccccceEEeecceEe-CCHHHHHHHHHHCCCEEEEEEeccccccccCceecCCC
Confidence            00012221122345566666522   233445555566666 89999999999999999999998899999999998877


Q ss_pred             CCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCCCcEEEEEeCCCccCccccceeccceecccc
Q psy1664         430 GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGLEI  501 (524)
Q Consensus       430 ~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p~~~~~~  501 (524)
                      +...++|||+|||||+++       |.+|||||||||++||++|||||+||.|.|||++.+++++|.+...+
T Consensus       254 ~~~~~~HaV~iVGyG~~~-------g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~~~~~g~p~~~~~~  318 (325)
T 3hhi_A          254 GQYLGGHAVRLVGWGTSN-------GVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIPLAPNTA  318 (325)
T ss_dssp             CCEEEEEEEEEEEEEEET-------TEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCEEEEEEC-----
T ss_pred             CCCCCCEEEEEEEEEecC-------CceEEEEEeCCCCCcccCCEEEEEcCCCeecCccceEEeecCCCCcc
Confidence            666679999999999876       89999999999999999999999999999999999999999987544

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=100.00  E-value=3.5e-69  Score=546.16  Aligned_cols=299  Identities=22%  Similarity=0.398  Sum_probs=243.6

Q ss_pred             HHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCC--CCccccccccccccchHHHHHHHhCCCCCCCCCCC
Q psy1664           5 TADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLP--KLPFYGAEKNALSKLTLSELEMRMGVHPDSKLPQN   82 (524)
Q Consensus         5 t~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~--~~~~~~~g~N~fsd~t~eE~~~~~~~~~~~~~~~~   82 (524)
                      ..++|++|+++|+|.|.+.+|...|+.+|.+|+++|++||++.  ...+|++++|+|+|||.|||+++++.+.... +..
T Consensus        23 ~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~g~~~~~~-~~~  101 (329)
T 3qt4_A           23 FQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNRGKAQK-PKH  101 (329)
T ss_dssp             HHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEECCCGGGGCCHHHHHHHHHHTCCC-----
T ss_pred             HHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCeEEeccccccCCHHHHHHhcCCccccc-ccc
Confidence            4568999999999999998899999999999999999999852  2379999999999999999999766442211 110


Q ss_pred             CC-CcccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCC
Q psy1664          83 RL-PLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD  161 (524)
Q Consensus        83 ~~-~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~  161 (524)
                      .. ........ ..+||++||||++     +|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+..
T Consensus       102 ~~~~~~~~~~~-~~~lP~~~DwR~~-----~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g--~~~~LSeQ~LvdC~~~  173 (329)
T 3qt4_A          102 PENLRMPYVSS-KKPLAASVDWRSN-----AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRG--RLTSLSEQNLIDCSSS  173 (329)
T ss_dssp             --CCEEECCCC-CSCCCSCEECTTT-----SCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCGG
T ss_pred             cccccccccCC-ccCCCCCEEcccc-----ccCCCccCCCCcChHHHHHHHHHHHHHHHHcC--CcccCCHHHHHHhccc
Confidence            00 00001111 1479999999987     59999999999999999999999999999986  4799999999999864


Q ss_pred             C-CCCCCCCChHHHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccc
Q psy1664         162 C-GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLN  240 (524)
Q Consensus       162 ~-~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (524)
                      + +.||+||++..|++|++++||++|++|       ||.+.        .+.|.......         .     .....
T Consensus       174 ~g~~GC~GG~~~~a~~yi~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~---------~-----~~i~~  224 (329)
T 3qt4_A          174 YGNAGCDGGWMDSAFSYIHDYGIMSESAY-------PYEAQ--------GDYCRFDSSQS---------V-----TTLSG  224 (329)
T ss_dssp             GTCCTTBCCCHHHHHHHHHHSCBCBTTTS-------CCCSS--------CCCCCCCGGGC---------C-----BCCSE
T ss_pred             cCCCCCCCCChhHHHHHHHHcCCCcHHHe-------eeecC--------CCCCCCCcccc---------e-----EEece
Confidence            3 469999999999999999999999999       99876        56776532110         0     11111


Q ss_pred             cceeeeecC-CCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCC-CCCCcEEEEEEeccCCCCCCCccceeEEE
Q psy1664         241 FGRIAYSLP-ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG-PLGEHAIRIIGWGQEPLGEGTSSVVKYWL  318 (524)
Q Consensus       241 ~~~~~~~~~-~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~-~~~~HaV~iVGyg~~~~~~g~~~g~~YWi  318 (524)
                          ...++ .++++||++|+++|||+|+|+++.+|++|++|||..+.|. ..++|||+|||||++       ++++|||
T Consensus       225 ----~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~GVy~~~~c~~~~~~HaV~iVGyg~~-------~g~~yWi  293 (329)
T 3qt4_A          225 ----YYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSD-------NGQDYWI  293 (329)
T ss_dssp             ----EEECCTTCHHHHHHHHHHTCCEEEEECCCGGGTTEEEEEECCSSCCSSCCCEEEEEEEEEEE-------TTEEEEE
T ss_pred             ----EEEecCCCHHHHHHHHHhCCCEEEEEecChhhhhccCceeecCCCCCCcCCEEEEEEEEEee-------CCccEEE
Confidence                23455 4789999999999999999999999999999999998885 578999999999986       4799999


Q ss_pred             EeCCCCCcccccCccccccccCccCCcCcCCcCCC
Q psy1664         319 VANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       319 vkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      ||||||++|||+|||||+++.. ..|++.+.+++|
T Consensus       294 vkNSWG~~WGe~GY~~i~r~~~-n~CgI~~~~~yp  327 (329)
T 3qt4_A          294 LKNSWGSGWGESGYWRQVRNYG-NNCGIATAASYP  327 (329)
T ss_dssp             EECSBCTTSTBTTEEEEESSSS-SGGGTTTTCEEE
T ss_pred             EEeCCCCcccCCcEEEEEeCCC-CccCCCCceeEe
Confidence            9999999999999999999862 369998776655

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=100.00  E-value=1.2e-68  Score=540.72  Aligned_cols=299  Identities=23%  Similarity=0.382  Sum_probs=241.8

Q ss_pred             HHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCC--CCccccccccccccchHHHHHHHh-CCCCCCCCCC
Q psy1664           5 TADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLP--KLPFYGAEKNALSKLTLSELEMRM-GVHPDSKLPQ   81 (524)
Q Consensus         5 t~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~--~~~~~~~g~N~fsd~t~eE~~~~~-~~~~~~~~~~   81 (524)
                      ..++|++|+++|+|.|.+.+|...|+.+|.+|+++|++||++.  ...+|++++|+|+|||.+||++++ +......  .
T Consensus         7 ~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~~--~   84 (314)
T 1by8_A            7 LDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLS--H   84 (314)
T ss_dssp             HHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSEEECCCTTSSSCHHHHHHHSCCCCCCSC--C
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEEcccccccCCHHHHHHHhccCCCCcc--c
Confidence            4678999999999999998999999999999999999999863  126899999999999999998754 4432211  0


Q ss_pred             CCCCcccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCC
Q psy1664          82 NRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD  161 (524)
Q Consensus        82 ~~~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~  161 (524)
                      ...............||++||||++    |+|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. 
T Consensus        85 ~~~~~~~~~~~~~~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAFs~~~alE~~~~i~~g--~~~~LSeq~lvdC~~-  157 (314)
T 1by8_A           85 SRSNDTLYIPEWEGRAPDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVS-  157 (314)
T ss_dssp             CCSSSSSBCCCCSSCCCSCCBSTTT----TCSCCCCBCCSSSCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHTTCT-
T ss_pred             ccCCccccccccccCCCCeEeCCCC----CCCCCcccCCCCCCcHHHHHHHHHHHHHHHhcC--CCcccCHHHHHHhcC-
Confidence            0000000111111239999999998    899999999999999999999999999999985  579999999999975 


Q ss_pred             CCCCCCCCChHHHHHHHHH-hCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccc
Q psy1664         162 CGNGCQGGFHGKAWKYWVT-TGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLN  240 (524)
Q Consensus       162 ~~~gC~GG~~~~a~~~~~~-~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (524)
                      .+.||+||++..||+|+++ .|+++|++|       ||.+.        .+.|......         ..     .....
T Consensus       158 ~~~gC~GG~~~~a~~yi~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~---------~~-----~~i~~  208 (314)
T 1by8_A          158 ENDGCGGGYMTNAFQYVQKNRGIDSEDAY-------PYVGQ--------EESCMYNPTG---------KA-----AKCRG  208 (314)
T ss_dssp             TSCGGGCCCSHHHHHHHHHTTCBCBTTTS-------CCCSS--------CCCCCCCGGG---------CC-----BCCSC
T ss_pred             CCCCCcCCCHHHHHHHHHHcCCcCcHhhC-------CCCCC--------CCCcCCCCcc---------ce-----eEECc
Confidence            5679999999999999984 699999888       99876        6678643211         00     01111


Q ss_pred             cceeeeecC-CCHHHHHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCC-CCCcEEEEEEeccCCCCCCCccceeEE
Q psy1664         241 FGRIAYSLP-ANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGP-LGEHAIRIIGWGQEPLGEGTSSVVKYW  317 (524)
Q Consensus       241 ~~~~~~~~~-~~~~~ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~-~~~HaV~iVGyg~~~~~~g~~~g~~YW  317 (524)
                          .+.++ .++++||++|+++|||+|+|+++ ++|++|++|||..+.|.. .++|||+|||||++       ++++||
T Consensus       209 ----~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~-------~g~~yW  277 (314)
T 1by8_A          209 ----YREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-------KGNKHW  277 (314)
T ss_dssp             ----EEECCSSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEECBCCTTCCSSCCCEEEEEEEEEEE-------TTEEEE
T ss_pred             ----EEEecCCCHHHHHHHHHHcCCEEEEEEeChHHhhhccCceecCCCCCCCCCCeEEEEEEEecc-------CCceEE
Confidence                23455 47899999999999999999998 689999999999886665 78999999999986       478999


Q ss_pred             EEeCCCCCcccccCccccccccCccCCcCcCCcCCC
Q psy1664         318 LVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       318 ivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      |||||||++|||+|||||+++.. ..|++.+.+++|
T Consensus       278 ivkNSWG~~WGe~GY~~i~r~~~-n~CgI~~~~~~p  312 (314)
T 1by8_A          278 IIKNSWGENWGNKGYILMARNKN-NACGIANLASFP  312 (314)
T ss_dssp             EEECSBTTTSTBTTEEEECCSSS-CGGGTTSSCEEE
T ss_pred             EEEcCCCCCcCcCCEEEEEcCCC-CcCCccCeeEEe
Confidence            99999999999999999999742 269998766555

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=100.00  E-value=2e-68  Score=539.25  Aligned_cols=299  Identities=25%  Similarity=0.414  Sum_probs=241.9

Q ss_pred             cHHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCC--CCccccccccccccchHHHHHHHh-CCCCCCCCC
Q psy1664           4 STADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLP--KLPFYGAEKNALSKLTLSELEMRM-GVHPDSKLP   80 (524)
Q Consensus         4 st~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~--~~~~~~~g~N~fsd~t~eE~~~~~-~~~~~~~~~   80 (524)
                      ...++|++|+++|+|.|.+.+|...|+.+|.+|+++|++||++.  ...+|++++|+|+|||.+||++++ +......  
T Consensus         7 ~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~s~~~g~N~FaDlt~eEf~~~~~g~~~~~~--   84 (315)
T 2c0y_A            7 TLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQ--   84 (315)
T ss_dssp             GGHHHHHHHHHHHTCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCGGGGCCHHHHHHHTTSBCCCCG--
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEeccCccccCCHHHHHHHhcCCCCCcc--
Confidence            35678999999999999988999999999999999999999863  136899999999999999997754 4332211  


Q ss_pred             CCCCCcccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhc-
Q psy1664          81 QNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCC-  159 (524)
Q Consensus        81 ~~~~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~-  159 (524)
                      .. ..... ......+||++||||++    |+|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+ 
T Consensus        85 ~~-~~~~~-~~~~~~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAfs~~~alE~~~~i~~g--~~~~LSeq~lvdC~~  156 (315)
T 2c0y_A           85 WQ-RNITY-KSNPNRILPDSVDWREK----GCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTG--KLVSLSAQNLVDCST  156 (315)
T ss_dssp             GG-SCBCC-------CCCSCEETTTT----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHSC
T ss_pred             cc-CCccc-cCcccCCCCCeEecCCC----CCcCCCcCcccCCCcHHHHHHHHHHHHHHHHhC--CCcCcCHHHHHhhcc
Confidence            00 00000 11112369999999998    899999999999999999999999999999985  57999999999998 


Q ss_pred             CC-CCCCCCCCChHHHHHHHHH-hCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCcccccc
Q psy1664         160 KD-CGNGCQGGFHGKAWKYWVT-TGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYED  237 (524)
Q Consensus       160 ~~-~~~gC~GG~~~~a~~~~~~-~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~  237 (524)
                      .. .+.||+||++..||+|+++ .|+++|++|       ||.+.        .+.|......   .           ...
T Consensus       157 ~~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~---~-----------~~~  207 (315)
T 2c0y_A          157 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY-------PYKAM--------DQKCQYDSKY---R-----------AAT  207 (315)
T ss_dssp             GGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTS-------CCCSS--------CCCCCCCGGG---E-----------EEC
T ss_pred             cccCCCCCCCCCHHHHHHHHHHhCCcCchhcC-------CCccC--------CCCcccCCcc---c-----------ccc
Confidence            43 3679999999999999985 699999888       99876        6678643210   0           001


Q ss_pred             ccccceeeeecC-CCHHHHHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCcccee
Q psy1664         238 DLNFGRIAYSLP-ANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVK  315 (524)
Q Consensus       238 ~~~~~~~~~~~~-~~~~~ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~  315 (524)
                      ...    .+.++ .++++||++|+++|||+|+|+++ ++|++|++|||..+.|...++|||+|||||++       ++++
T Consensus       208 i~~----~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~~~HaV~iVGyg~~-------~g~~  276 (315)
T 2c0y_A          208 CSK----YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-------NGKE  276 (315)
T ss_dssp             CCE----EEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTEEEEEECCTTCCSCCCEEEEEEEEEEE-------TTEE
T ss_pred             cCC----eEEeCCCCHHHHHHHHHHcCCEEEEEecCchhhhccCCCcccCCCCCCcCCEEEEEEEEeec-------CCCc
Confidence            111    23455 47899999999999999999998 69999999999988777788999999999986       4789


Q ss_pred             EEEEeCCCCCcccccCccccccccCccCCcCcCCcCCC
Q psy1664         316 YWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       316 YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      |||||||||++|||+|||||+++.. ..|++.+.+++|
T Consensus       277 yWivkNSWG~~WGe~GY~~i~r~~~-n~CgI~~~~~~p  313 (315)
T 2c0y_A          277 YWLVKNSWGHNFGEEGYIRMARNKG-NHCGIASFPSYP  313 (315)
T ss_dssp             EEEEECSBCTTSTBTTEEEEECSSS-SGGGTTTSCEEE
T ss_pred             EEEEEcCCCCCcCCCcEEEEEcCCC-CccCcCceeEEe
Confidence            9999999999999999999999742 269988766554

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=100.00  E-value=4.1e-68  Score=538.13  Aligned_cols=297  Identities=24%  Similarity=0.386  Sum_probs=240.5

Q ss_pred             HHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHHHHHHhC-CCCCCCCCCCC
Q psy1664           5 TADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMG-VHPDSKLPQNR   83 (524)
Q Consensus         5 t~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~~~~-~~~~~~~~~~~   83 (524)
                      +.++|++|+++|+|.|.+.+|...||.+|.+|+++|++||++.  .+|++++|+|+|||.+||++++. .....  +...
T Consensus        18 ~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~--~~~~~g~N~FaDlt~eEf~~~~~g~~~~~--~~~~   93 (322)
T 1pci_A           18 LIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKN--NSYWLGLNEFADLSNDEFNEKYVGSLIDA--TIEQ   93 (322)
T ss_dssp             HHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHTTC--CSEEECSCTTTTSCHHHHHHHHCCCBCCC--SSCC
T ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhhccC--CceEEecCccccCCHHHHHHHhcCCCCcc--cccc
Confidence            4568999999999999988899999999999999999999875  79999999999999999998654 33221  1100


Q ss_pred             CCcccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCC
Q psy1664          84 LPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCG  163 (524)
Q Consensus        84 ~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~  163 (524)
                      .............||++||||++    |+|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. .+
T Consensus        94 ~~~~~~~~~~~~~lP~~~DwR~~----g~vt~VkdQg~CGSCWAFaa~~alE~~~~i~~g--~~~~lSeq~lvdC~~-~~  166 (322)
T 1pci_A           94 SYDEEFINEDIVNLPENVDWRKK----GAVTPVRHQGSCGSCWAFSAVATVEGINKIRTG--KLVELSEQELVDCER-RS  166 (322)
T ss_dssp             CCSEECCCCCCCCSCSCEETTTT----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHSCT-TS
T ss_pred             ccccccccccccCCCCeEecccC----CCCCCccccccCCccHHHHHHHHHHHHHHHHcC--CccccCHHHHHhhcC-CC
Confidence            00000111123479999999998    899999999999999999999999999999986  479999999999975 56


Q ss_pred             CCCCCCChHHHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccce
Q psy1664         164 NGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGR  243 (524)
Q Consensus       164 ~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (524)
                      .||+||++..||+|++++|+++|++|       ||.+.        .+.|.......+        ..     ....|  
T Consensus       167 ~gC~GG~~~~a~~yi~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~~--------~~-----~i~~~--  216 (322)
T 1pci_A          167 HGCKGGYPPYALEYVAKNGIHLRSKY-------PYKAK--------QGTCRAKQVGGP--------IV-----KTSGV--  216 (322)
T ss_dssp             CGGGCBCHHHHHHHHHHHCBCBTTTS-------CCCSS--------CCCCTTTTCCSC--------CB-----CCCCE--
T ss_pred             CCCCCCCHHHHHHHHHHhCCCchhhC-------CCCCC--------CCCCCCCCCCCc--------eE-----EEeeE--
Confidence            79999999999999999999998888       99876        677875422111        00     11111  


Q ss_pred             eeeecCC-CHHHHHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeC
Q psy1664         244 IAYSLPA-NEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  321 (524)
Q Consensus       244 ~~~~~~~-~~~~ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkN  321 (524)
                        ..++. ++++|+++|++ |||+|+|+++ ++|++|++|||..+ |...++|||+|||||++       +|++||||||
T Consensus       217 --~~v~~~~e~~l~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~-c~~~~~HaV~iVGyg~~-------~g~~yWivkN  285 (322)
T 1pci_A          217 --GRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP-CGTKVDGAVTAVGYGKS-------GGKGYILIKN  285 (322)
T ss_dssp             --EECCSSBHHHHHHHHHH-SCEEEEECTTCHHHHTEEEEEECCS-CCSCCCEEEEEEEEEEE-------TTEEEEEEEC
T ss_pred             --EEeCCCcHHHHHHHHHH-CCEEEEEecccccccccCCeEeCCC-CCCCCCEEEEEEEEecc-------CCccEEEEEe
Confidence              34554 67888888876 9999999997 79999999999875 55567999999999987       4789999999


Q ss_pred             CCCCcccccCccccccccC--ccCCcCcCCcCCC
Q psy1664         322 SFNTNWGENGLFRIGCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       322 SWG~~WGe~Gy~ri~~~~~--~~~c~~~~~~~~~  353 (524)
                      |||++|||+|||||+++..  ...||+.+.+++|
T Consensus       286 SWG~~WGe~GY~~i~r~~~~~~n~CgI~~~~~yp  319 (322)
T 1pci_A          286 SWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP  319 (322)
T ss_dssp             SBCSSSTBTTEEEEECCCSBSSCGGGGGGCCEEE
T ss_pred             CCCCcccCCeEEEEEcCCCCCCCcCCcccceeEE
Confidence            9999999999999999852  2469988776655

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=100.00  E-value=4.4e-68  Score=537.02  Aligned_cols=297  Identities=23%  Similarity=0.401  Sum_probs=241.2

Q ss_pred             HHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCC--CCccccccccccccchHHHHHHHh-CCCCCCCCCC
Q psy1664           5 TADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLP--KLPFYGAEKNALSKLTLSELEMRM-GVHPDSKLPQ   81 (524)
Q Consensus         5 t~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~--~~~~~~~g~N~fsd~t~eE~~~~~-~~~~~~~~~~   81 (524)
                      ..++|++|+++|+|.| +.+|...|+.+|.+|+++|++||++.  ...+|++++|+|+|||.+||++++ +..+...  .
T Consensus         8 ~~~~f~~~~~~~~k~Y-~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~--~   84 (316)
T 1cs8_A            8 LEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKP--R   84 (316)
T ss_dssp             GHHHHHHHHHHTTCCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCCC--S
T ss_pred             HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhhccccCCcceEEccCccCCCCHHHHHHHhcCCCCCcc--c
Confidence            5678999999999999 78888999999999999999999852  126899999999999999998754 4332211  1


Q ss_pred             CCCCcccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCC
Q psy1664          82 NRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD  161 (524)
Q Consensus        82 ~~~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~  161 (524)
                        ..... ......+||++||||++    |+|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+..
T Consensus        85 --~~~~~-~~~~~~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g--~~~~LSeq~lvdC~~~  155 (316)
T 1cs8_A           85 --KGKVF-QEPLFYEAPRSVDWREK----GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGP  155 (316)
T ss_dssp             --CCEEC-CCCTTCCCCSCEEGGGG----TCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCGG
T ss_pred             --cCccc-cCccccCCCCcEecCCC----CCcCCCCcccCCccHHHHHHHHHHHHHHHHHcC--CCcCcCHHHHHHhccc
Confidence              11111 11122469999999999    899999999999999999999999999999985  4799999999999864


Q ss_pred             C-CCCCCCCChHHHHHHHH-HhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCcccccccc
Q psy1664         162 C-GNGCQGGFHGKAWKYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDL  239 (524)
Q Consensus       162 ~-~~gC~GG~~~~a~~~~~-~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (524)
                      + +.||+||++..||+|++ +.|+++|++|       ||.+.        .+.|.......              .....
T Consensus       156 ~g~~gC~GG~~~~a~~yi~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~--------------~~~i~  206 (316)
T 1cs8_A          156 QGNEGCNGGLMDYAFQYVQDNGGLDSEESY-------PYEAT--------EESCKYNPKYS--------------VANDA  206 (316)
T ss_dssp             GTCCGGGCBCHHHHHHHHHHHTCEEBTTTS-------CCCSS--------CCCCCCCGGGE--------------EECCC
T ss_pred             cCCCCCCCCCHHHHHHHHHHhCCcCchhcc-------CCCCC--------CCCcCCCCccc--------------eeEec
Confidence            3 57999999999999997 6799998888       99876        66776431100              01111


Q ss_pred             ccceeeeecCCCHHHHHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCC-CCCcEEEEEEec---cCCCCCCCccce
Q psy1664         240 NFGRIAYSLPANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGP-LGEHAIRIIGWG---QEPLGEGTSSVV  314 (524)
Q Consensus       240 ~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~-~~~HaV~iVGyg---~~~~~~g~~~g~  314 (524)
                      .    .+.++.++++||++|+++|||+|+|+++ ++|++|++|||..+.|.. .++|||+|||||   +++      +++
T Consensus       207 ~----~~~v~~~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGygd~~~~~------~g~  276 (316)
T 1cs8_A          207 G----FVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES------DNN  276 (316)
T ss_dssp             C----EEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCTTCCSSCCCEEEEEEEEEEECCSS------CCE
T ss_pred             c----EEEeCCCHHHHHHHHHhcCCEEEEEecCChhhccccCceECCCCCCCCCCCEEEEEEEecCCcccC------CCC
Confidence            1    2345568999999999999999999998 589999999999886664 789999999999   542      478


Q ss_pred             eEEEEeCCCCCcccccCccccccccCccCCcCcCCcCCC
Q psy1664         315 KYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       315 ~YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      +|||||||||++|||+|||||+++.. ..|++.+.+++|
T Consensus       277 ~yWivkNSWG~~WGe~GY~~i~r~~~-n~CgI~~~~~~p  314 (316)
T 1cs8_A          277 KYWLVKNSWGEEWGMGGYVKMAKDRR-NHCGIASAASYP  314 (316)
T ss_dssp             EEEEEECSBCTTSTBTTEEEEECSSS-SGGGTTTSCEEE
T ss_pred             cEEEEEcCCCCCcccCCEEEEECCCC-CccCccceeeEe
Confidence            99999999999999999999999752 369988766554

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=100.00  E-value=3.4e-68  Score=536.47  Aligned_cols=295  Identities=22%  Similarity=0.420  Sum_probs=238.0

Q ss_pred             HHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCC--CCccccccccccccchHHHHHHH-hC-CCCCCCCCCC
Q psy1664           7 DAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLP--KLPFYGAEKNALSKLTLSELEMR-MG-VHPDSKLPQN   82 (524)
Q Consensus         7 ~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~--~~~~~~~g~N~fsd~t~eE~~~~-~~-~~~~~~~~~~   82 (524)
                      ++|++|+++|+|.|.+.+|...| .+|.+|+++|++||++.  ...+|++++|+|+|||.+||+++ ++ .....  +..
T Consensus         3 ~~f~~~~~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~--~~~   79 (310)
T 2o6x_A            3 DLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRAS--DIL   79 (310)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSSSEEECCCTTTTSCHHHHHHHHCCCCCCGG--GGS
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHhhhccCCCcEEEeccccCCCCHHHHHHHhcCCCCCcc--ccc
Confidence            57999999999999988888999 99999999999999862  12689999999999999999974 44 32211  000


Q ss_pred             CCCcccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCC
Q psy1664          83 RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC  162 (524)
Q Consensus        83 ~~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~  162 (524)
                      ...... .... .+||++||||++    |+|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+..+
T Consensus        80 ~~~~~~-~~~~-~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAfa~~~alE~~~~i~~g--~~~~LS~q~lvdC~~~~  151 (310)
T 2o6x_A           80 SHGVPY-EANN-RAVPDKIDWRES----GYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNER--TSISFSEQQLVDCSRPW  151 (310)
T ss_dssp             CSSEEC-CC-----CCSCEEGGGG----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHS--SCCCBCHHHHHHHCGGG
T ss_pred             ccCCcc-cccc-CCCCCeEecCcC----CCCCCcccCCCCCccHHHHhHHHHHHHHHHHhC--CCcCcCHHHHHHhhhcc
Confidence            000000 1111 269999999998    899999999999999999999999999999986  47999999999998643


Q ss_pred             -CCCCCCCChHHHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCcccccccccc
Q psy1664         163 -GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNF  241 (524)
Q Consensus       163 -~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (524)
                       +.||+||++..||+|+++.|+++|++|       ||.+.        .+.|......         ...     .... 
T Consensus       152 ~~~gC~GG~~~~a~~yi~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~---------~~~-----~i~~-  201 (310)
T 2o6x_A          152 GNNGCGGGLMENAYQYLKQFGLETESSY-------PYTAV--------EGQCRYNKQL---------GVA-----KVTG-  201 (310)
T ss_dssp             TCCGGGCCCHHHHHHHHTTSCBCBTTTS-------CCCSS--------CCCCCCCGGG---------CCE-----EEEE-
T ss_pred             CCCCCCCCCHHHHHHHHHHCCcCchhcC-------CCCCC--------CCCccCCCCC---------Cce-----EeCe-
Confidence             679999999999999998899998888       99875        6677643110         000     1111 


Q ss_pred             ceeeeecC-CCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCC-CCCCcEEEEEEeccCCCCCCCccceeEEEE
Q psy1664         242 GRIAYSLP-ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG-PLGEHAIRIIGWGQEPLGEGTSSVVKYWLV  319 (524)
Q Consensus       242 ~~~~~~~~-~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~-~~~~HaV~iVGyg~~~~~~g~~~g~~YWiv  319 (524)
                         .+.++ .++++||++|+++|||+|+|+++++|++|++|||..+.|. ..++|||+|||||++       ++++||||
T Consensus       202 ---~~~v~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~-------~g~~yWiv  271 (310)
T 2o6x_A          202 ---FYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQ-------GGTDYWIV  271 (310)
T ss_dssp             ---EEEECSCCHHHHHHHHHHHCCEEEEECCCHHHHTEEEEEECCSSCCTTCCCEEEEEEEEEEE-------TTEEEEEE
T ss_pred             ---EEEeCCCCHHHHHHHHHhcCCeEEEEecchhhhhCCCceecCCCCCCCCCCEEEEEEEEecc-------CCceEEEE
Confidence               23455 4789999999999999999999989999999999987665 478999999999987       47899999


Q ss_pred             eCCCCCcccccCccccccccCccCCcCcCCcCCC
Q psy1664         320 ANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       320 kNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      |||||++|||+|||||+++.. ..|++.+.+++|
T Consensus       272 kNSWG~~WGe~GY~~i~r~~~-n~Cgi~~~~~~p  304 (310)
T 2o6x_A          272 KNSWGLSWGERGYIRMVRNRG-NMCGIASLASLP  304 (310)
T ss_dssp             ECSBCTTSTBTTEEEEECSSS-SGGGTTTSEEEE
T ss_pred             EeCCCCccCCCcEEEEEcCCC-CcCCccceeeEE
Confidence            999999999999999999752 269987666554

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=100.00  E-value=6.1e-66  Score=519.17  Aligned_cols=287  Identities=22%  Similarity=0.307  Sum_probs=231.3

Q ss_pred             cHHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHHHHH-HhCCCCCCCCCCC
Q psy1664           4 STADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEM-RMGVHPDSKLPQN   82 (524)
Q Consensus         4 st~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~-~~~~~~~~~~~~~   82 (524)
                      +++++|++|+++|+|.|.+.+|...||.+|.+|+++|++ |+     .   ++|+|+|||.+||++ +++.....  ...
T Consensus         3 ~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~-N~-----~---g~N~F~Dlt~eEf~~~~~~~~~~~--~~~   71 (312)
T 1xkg_A            3 SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQS-NG-----G---AINHLSDLSLDEFKNRFLMSAEAF--EHL   71 (312)
T ss_dssp             -CCCSHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH-HC-----C---CCCTTTTSCHHHHHHHHSBCHHHH--HHH
T ss_pred             hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh-cc-----C---CCCcccCCCHHHHHHHhcCCCCcc--ccc
Confidence            355689999999999999989999999999999999999 73     2   899999999999998 55532110  000


Q ss_pred             CCCcccccC----CCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhh
Q psy1664          83 RLPLLVQLS----DPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSC  158 (524)
Q Consensus        83 ~~~~~~~~~----~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC  158 (524)
                      .........    ....+||++||||++    |+|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||
T Consensus        72 ~~~~~~~~~~~~~~~~~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g--~~~~LSeq~lvdC  145 (312)
T 1xkg_A           72 KTQFDLNAETNACSINGNAPAEIDLRQM----RTVTPIRMQGGCGSAWAFSGVAATESAYLAYRD--QSLDLAEQELVDC  145 (312)
T ss_dssp             HHHHC-----CBCCCCSCCCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHC--CCCCBCHHHHHHH
T ss_pred             cCCcccccccccccccccCCCccccccC----CCcCCccccCCCCccHHHHHHHHHHHHHHHHhC--CCCCcCHHHHHhc
Confidence            000000000    012379999999998    899999999999999999999999999999985  4799999999999


Q ss_pred             cCCCCCCCCCCChHHHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccc
Q psy1664         159 CKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDD  238 (524)
Q Consensus       159 ~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~  238 (524)
                      +.  ..||+||++..||+|+++.||++|++|       ||.+.        .+.|+ .....         .     ...
T Consensus       146 ~~--~~GC~GG~~~~a~~yi~~~Gi~~e~~y-------PY~~~--------~~~C~-~~~~~---------~-----~~i  193 (312)
T 1xkg_A          146 AS--QHGCHGDTIPRGIEYIQHNGVVQESYY-------RYVAR--------EQSCR-RPNAQ---------R-----FGI  193 (312)
T ss_dssp             TC--SSTTBCCCHHHHHHHHHHHCEEBGGGS-------CCCSS--------CCCCC-CCSSC---------E-----ECC
T ss_pred             cC--CCCCCCCCHHHHHHHHHHcCCCccccC-------CccCC--------CCCCC-CCCCc---------e-----EEE
Confidence            72  279999999999999999999998888       99876        66776 21100         0     011


Q ss_pred             cccceeeeecC-CCHHHHHHHHHH-cCCeEEEEEecc--cccccCCceEEcCCCC-C-CCCcEEEEEEeccCCCCCCCcc
Q psy1664         239 LNFGRIAYSLP-ANEETIMREIFR-HGPVEGSMTIYA--DMILYKTGIYKHVAGG-P-LGEHAIRIIGWGQEPLGEGTSS  312 (524)
Q Consensus       239 ~~~~~~~~~~~-~~~~~ik~~l~~-~GPV~v~i~v~~--~f~~Y~sGIy~~~~~~-~-~~~HaV~iVGyg~~~~~~g~~~  312 (524)
                      ..    ...++ .++++||++|++ +|||+|+|+++.  +|++|++|||..+.|. . . +|||+|||||++       +
T Consensus       194 ~~----y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y~~GVy~~~~c~~~~~-~HaV~iVGyg~~-------~  261 (312)
T 1xkg_A          194 SN----YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN-YHAVNIVGYSNA-------Q  261 (312)
T ss_dssp             SE----EEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCCSSCCE-EEEEEEEEEEEE-------T
T ss_pred             ee----EEEeCCCCHHHHHHHHHhcCCCEEEEEEecccccccccCCcEEcCCCCCCCcC-ceEEEEEEEecc-------C
Confidence            11    23455 478999999999 999999999997  8999999999988775 4 6 999999999986       4


Q ss_pred             ceeEEEEeCCCCCcccccCccccccccCccCCcCcCCcCCC
Q psy1664         313 VVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       313 g~~YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      |++|||||||||++|||+|||||+++.  ..|++.+.++++
T Consensus       262 g~~yWivkNSWG~~WGe~GY~~i~r~~--n~CgI~~~~~~~  300 (312)
T 1xkg_A          262 GVDYWIVRNSWDTNWGDNGYGYFAANI--DLMMIEEYPYVV  300 (312)
T ss_dssp             TEEEEEEECSBCTTSTBTTEEEEECSS--CGGGTTTCCEEE
T ss_pred             CceEEEEEeCCCCcccCCcEEEEEcCC--CcccccceeEEe
Confidence            789999999999999999999999983  369998766554

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=100.00  E-value=3.8e-64  Score=494.94  Aligned_cols=253  Identities=51%  Similarity=1.072  Sum_probs=220.2

Q ss_pred             CCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHH
Q psy1664          96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAW  175 (524)
Q Consensus        96 ~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~  175 (524)
                      +||++||||++||+|+.|+||||||.||||||||++++||++++|+++++..+.||+|+|+||+...+.||+||++..||
T Consensus         2 ~lP~s~D~R~~~~~~~~vtpVkdQg~CGSCWAFaa~~ale~~~~i~~~~~~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~   81 (254)
T 3qsd_A            2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAW   81 (254)
T ss_dssp             CCCSCEEHHHHCTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTCCCCCBCHHHHHHHCTTSBCTTBCBCHHHHH
T ss_pred             CCCCcCccccccCCCCccCCCCCcccCccHHHHHHHHHHHHHHHHHhCCCccccCCHHHHHhhhcCCCCCCCCCCHHHHH
Confidence            69999999999999999999999999999999999999999999998765679999999999987667899999999999


Q ss_pred             HHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHH
Q psy1664         176 KYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETI  255 (524)
Q Consensus       176 ~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  255 (524)
                      +|++++|+++|++|...+.|+||...          .|.                                         
T Consensus        82 ~yi~~~Gi~~e~~y~~~~~c~PY~~~----------~c~-----------------------------------------  110 (254)
T 3qsd_A           82 DYWVKEGIVTGSSKENHAGCEPYPFP----------KCE-----------------------------------------  110 (254)
T ss_dssp             HHHHHTCBCBCCCTTTCCSSSCCSSC----------CCB-----------------------------------------
T ss_pred             HHHHHcCCCcccccccCcCcCCcccc----------ccc-----------------------------------------
Confidence            99999999999999999999999753          111                                         


Q ss_pred             HHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcccc
Q psy1664         256 MREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI  335 (524)
Q Consensus       256 k~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri  335 (524)
                                                                                                      
T Consensus       111 --------------------------------------------------------------------------------  110 (254)
T 3qsd_A          111 --------------------------------------------------------------------------------  110 (254)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCccCCcCcCCcCCCCCCCCCCCCcccccccccCccccccCcceeeeEEEEcCCCHHHHHHHHHhCCCEEEEEeccc
Q psy1664         336 GCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYA  415 (524)
Q Consensus       336 ~~~~~~~~c~~~~~~~~~~C~~~~~~~p~C~~~C~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~  415 (524)
                                ....+..+.|......++.|...|..++...+..++.+....|.++.++++||++|+++|||+++|++++
T Consensus       111 ----------~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gPv~~~~~~~~  180 (254)
T 3qsd_A          111 ----------HHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE  180 (254)
T ss_dssp             ----------CSSCSSSCBCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECCSCHHHHHHHHHHHCCEEEEEEEEG
T ss_pred             ----------ccccCcCCCCcccccCCccccccccCCccceeeeeeeeeeeeEecCCcHHHHHHHHHHcCCEEEEEEecc
Confidence                      0001111234333345667778888777766777777777788888899999999999999999999988


Q ss_pred             ccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCCCcEEEEEeCCCccCccccceeccc
Q psy1664         416 DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLP  495 (524)
Q Consensus       416 ~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p  495 (524)
                      +|++|++|||..+++...++|+|+|||||+++       +.+|||||||||++||++|||||+||.|.|||++.+++++|
T Consensus       181 ~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~-------g~~ywivkNSWG~~WG~~Gy~~i~rg~n~CgI~~~~~~~~p  253 (254)
T 3qsd_A          181 DFLNYKSGIYKHITGETLGGHAIRIIGWGVEN-------KAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTAGRI  253 (254)
T ss_dssp             GGGGCCSSEECCCSSCEEEEEEEEEEEEEEET-------TEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSSEEEEEC
T ss_pred             ccccccCCeeccCCCCCCCCeEEEEEEEeecC-------CeeEEEEEeCCCCCcccCCeEEEEcCCCeecCCCceEeecc
Confidence            99999999998877766679999999999876       88999999999999999999999999999999999999998


Q ss_pred             e
Q psy1664         496 K  496 (524)
Q Consensus       496 ~  496 (524)
                      .
T Consensus       254 ~  254 (254)
T 3qsd_A          254 N  254 (254)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=100.00  E-value=2.9e-63  Score=519.31  Aligned_cols=297  Identities=30%  Similarity=0.516  Sum_probs=183.1

Q ss_pred             cccccccchhHHhhhhhhhhhcCCCCcccccc-ccccccchHHHHHHHhCCCCCCC-CCCCCCCcccccCCCCCCCCCcc
Q psy1664          24 NHSNGVFCDLSKAFDRVDHSILLPKLPFYGAE-KNALSKLTLSELEMRMGVHPDSK-LPQNRLPLLVQLSDPLEELPEGF  101 (524)
Q Consensus        24 ~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g-~N~fsd~t~eE~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lP~s~  101 (524)
                      -+...|+.+|.+|+++|++||+++  .+|+++ +|+|+|||.+||+++++...... .+. ..+..........+||++|
T Consensus       135 ~~~~~R~~if~~N~~~I~~~N~~~--~~~~~~~~n~faDlT~eEf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lP~s~  211 (441)
T 3pdf_A          135 SQEKYSNRLYKYDHNFVKAINAIQ--KSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPK-PAPLTAEIQQKILFLPTSW  211 (441)
T ss_dssp             --------------------------------------------------------------------------CCCSCE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHccC--CceEeecccccccCCHHHHHHHhCCCcccccccc-cCccccccccccccCCCCE
Confidence            455788999999999999999987  799998 79999999999999776432110 000 0000001112235799999


Q ss_pred             ccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHH-HHHHHH
Q psy1664         102 DARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA-WKYWVT  180 (524)
Q Consensus       102 DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a-~~~~~~  180 (524)
                      |||++ .++++|+||||||.||||||||++++||++++|++++...+.||+|+|+||+. .+.||+||++..| ++|+++
T Consensus       212 DwR~~-~g~~~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~-~~~GC~GG~~~~aa~~yi~~  289 (441)
T 3pdf_A          212 DWRNV-HGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ-YAQGCEGGFPYLIAGKYAQD  289 (441)
T ss_dssp             ETTCB-TTBCCSCCCCBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCT-TSCTTBCCCHHHHTTHHHHH
T ss_pred             ECCcC-CCCCccCcccccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhcc-CCCCCCCCchhHHHHHHHHh
Confidence            99997 23458999999999999999999999999999998755456799999999975 4779999999997 899999


Q ss_pred             hCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHH
Q psy1664         181 TGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIF  260 (524)
Q Consensus       181 ~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~  260 (524)
                      +||++|+.|       ||.+.        .+.|.....        |..                               
T Consensus       290 ~Gi~tE~~y-------PY~~~--------~~~C~~~~~--------~~~-------------------------------  315 (441)
T 3pdf_A          290 FGLVEEACF-------PYTGT--------DSPCKMKED--------CFR-------------------------------  315 (441)
T ss_dssp             TCBCBGGGS-------CCCSS--------CCCSCCCSS--------CCC-------------------------------
T ss_pred             cCCCcHHHe-------eeccc--------CCCCCCccc--------cce-------------------------------
Confidence            999998888       99865        555643110        000                               


Q ss_pred             HcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccccccccC
Q psy1664         261 RHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPY  340 (524)
Q Consensus       261 ~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~~~~  340 (524)
                                                         ..+.+|.                               +|.    
T Consensus       316 -----------------------------------~~~~~y~-------------------------------~v~----  325 (441)
T 3pdf_A          316 -----------------------------------YYSSEYH-------------------------------YVG----  325 (441)
T ss_dssp             -----------------------------------BCEEEEE-------------------------------ETT----
T ss_pred             -----------------------------------eeeccEE-------------------------------EeC----
Confidence                                               0000110                               000    


Q ss_pred             ccCCcCcCCcCCCCCCCCCCCCcccccccccCccccccCcceeeeEEEEcCCCHHHHHHHHHhCCCEEEEEecccccccc
Q psy1664         341 EIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILY  420 (524)
Q Consensus       341 ~~~c~~~~~~~~~~C~~~~~~~p~C~~~C~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y  420 (524)
                                                         .+.           ...++++||.+|+++|||+|+|+|+++|++|
T Consensus       326 -----------------------------------~~~-----------~~~~e~~ik~al~~~GPVsvai~a~~~F~~Y  359 (441)
T 3pdf_A          326 -----------------------------------GFY-----------GGCNEALMKLELVHHGPMAVAFEVYDDFLHY  359 (441)
T ss_dssp             -----------------------------------SST-----------TCCCHHHHHHHHHHHCCEEEEECCCGGGGGC
T ss_pred             -----------------------------------Ccc-----------CCCcHHHHHHHHHHCCCeEEEEEeccccccc
Confidence                                               000           0136889999999999999999998899999


Q ss_pred             cccEEeCCCCC------CccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCCCcEEEEEeCCCccCccccceecc
Q psy1664         421 KTGIYKHVAGG------PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL  494 (524)
Q Consensus       421 ~~gi~~~~~~~------~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~  494 (524)
                      ++|||..+++.      ..++|||+|||||++.     +.|.+|||||||||++||++|||||+||.|.|||++.+++++
T Consensus       360 ~sGVy~~~~~~~~~~~~~~~~HaV~iVGyG~~~-----~~G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI~s~~~a~~  434 (441)
T 3pdf_A          360 KKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDS-----ASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT  434 (441)
T ss_dssp             CSSEECCC---CCCCCCCCCCEEEEEEEEEECT-----TTCCEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCCEEEE
T ss_pred             CCceEecCCCCcccCCCCcCCeEEEEEEecccC-----CCCceEEEEEcCCCCCcCCCeEEEEEcCCCccCCCCceEEee
Confidence            99999876532      3589999999999862     128899999999999999999999999999999999999999


Q ss_pred             ceeccc
Q psy1664         495 PKIGLE  500 (524)
Q Consensus       495 p~~~~~  500 (524)
                      |.+..|
T Consensus       435 P~~~~e  440 (441)
T 3pdf_A          435 PIPKLE  440 (441)
T ss_dssp             ECCCCC
T ss_pred             ccCCCC
Confidence            987754

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=100.00  E-value=6e-63  Score=489.40  Aligned_cols=255  Identities=53%  Similarity=1.203  Sum_probs=215.0

Q ss_pred             CCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCC-CCCCCCCCChHH
Q psy1664          95 EELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CGNGCQGGFHGK  173 (524)
Q Consensus        95 ~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~-~~~gC~GG~~~~  173 (524)
                      .+||++||||++|++|+.|+||||||.||||||||++++||++++|++++...+.||+|+|+||+.. .+.||+||++..
T Consensus         5 ~~lP~~~D~R~~w~~~~~vt~VkdQg~CGSCWAfa~~~ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~GG~~~~   84 (266)
T 3cbj_A            5 LKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAE   84 (266)
T ss_dssp             CCCCSCEEHHHHSTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBCBCHHH
T ss_pred             CCCCccCcchhccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCCCCHHH
Confidence            4799999999999999999999999999999999999999999999986555799999999999753 467999999999


Q ss_pred             HHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHH
Q psy1664         174 AWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEE  253 (524)
Q Consensus       174 a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (524)
                      ||+|++++|++++.+|...|.|+||...          .|...                                     
T Consensus        85 a~~y~~~~Gi~~~~~Y~~~e~~~PY~~~----------~~~~~-------------------------------------  117 (266)
T 3cbj_A           85 AWNFWTRKGLVSGGLYESHVGCRPYSIP----------PCEAH-------------------------------------  117 (266)
T ss_dssp             HHHHHHHTCBCBCCSTTCCCSSSCCCSC----------CCSCC-------------------------------------
T ss_pred             HHHHHHHhCcCcCccccccccccCcccc----------ccccc-------------------------------------
Confidence            9999999999999999877899999753          11000                                     


Q ss_pred             HHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcc
Q psy1664         254 TIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF  333 (524)
Q Consensus       254 ~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~  333 (524)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (266)
T 3cbj_A          118 --------------------------------------------------------------------------------  117 (266)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCccCCcCcCCcCCCCCCCCCCCCcccccccccCccccccCcceeeeEEEEcCCCHHHHHHHHHhCCCEEEEEec
Q psy1664         334 RIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI  413 (524)
Q Consensus       334 ri~~~~~~~~c~~~~~~~~~~C~~~~~~~p~C~~~C~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~  413 (524)
                                    ..+..+.|.. ...+|.|...|+.++...|..++++....+.++.++++||++|+++|||+++|++
T Consensus       118 --------------~~~~~~~C~~-~~~~p~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~i~~~GPV~v~i~~  182 (266)
T 3cbj_A          118 --------------VNGARPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV  182 (266)
T ss_dssp             --------------CSCSSCCCCS-CCCCCCCCCSCCTTCCSCTGGGCBCBSCCEECCSCHHHHHHHHHHHCCEEEEEEE
T ss_pred             --------------ccCCCCCCcc-ccCCCccccccCCCCcceeeeeeeeeeeeEEeCCCHHHHHHHHHhcCCEEEEEEe
Confidence                          0000112221 1235667777776666556666666666678888999999999999999999999


Q ss_pred             ccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCCCcEEEEEeCCCccCccccceec
Q psy1664         414 YADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAG  493 (524)
Q Consensus       414 ~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~  493 (524)
                      +++|++|++|||.++++...++|||+|||||+++       |++|||||||||++||++|||||+||.|.|||++.++++
T Consensus       183 ~~~f~~Y~~Gvy~~~~~~~~~~HaV~iVGyg~~~-------g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgI~~~~~~~  255 (266)
T 3cbj_A          183 YSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVEN-------GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG  255 (266)
T ss_dssp             EGGGGGCCSSEECCCSSCEEEEEEEEEEEEEEET-------TEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEEC
T ss_pred             ccchhhcCCeEEecCCCCccCCeEEEEEEecccC-------CceEEEEEcCCCCccCCCCEEEEEcCCCcccccCceEEE
Confidence            8899999999998876665679999999999876       899999999999999999999999999999999999999


Q ss_pred             cceec
Q psy1664         494 LPKIG  498 (524)
Q Consensus       494 ~p~~~  498 (524)
                      +|.+.
T Consensus       256 ~p~~~  260 (266)
T 3cbj_A          256 IPRTD  260 (266)
T ss_dssp             CBCCC
T ss_pred             Eeecc
Confidence            99753

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=100.00  E-value=8.5e-55  Score=418.16  Aligned_cols=209  Identities=27%  Similarity=0.526  Sum_probs=177.2

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++++++  ..+.||+|+|+||+. .+.||+||++..|++
T Consensus         1 lP~~~Dwr~~----~~v~pvkdQg~cGsCWAfa~~~~~e~~~~~~~~--~~~~lS~q~l~dc~~-~~~gC~GG~~~~a~~   73 (215)
T 3kwz_A            1 APDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVS-ENDGCGGGYMTNAFQ   73 (215)
T ss_dssp             CTTCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSCTTBCCCHHHHHH
T ss_pred             CCCCCccCcC----CCCCCcccCCCCcHHHHHHHHHHHHHHHHHHcC--CCcccCHHHHHHhcC-CCCCCCCCCHHHHHH
Confidence            7999999998    899999999999999999999999999999986  468999999999975 467999999999999


Q ss_pred             HHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCC-CHHH
Q psy1664         177 YWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-NEET  254 (524)
Q Consensus       177 ~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  254 (524)
                      |++++ |+++|++|       ||...        .+.|+......              ......    ...++. ++++
T Consensus        74 ~~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~--------------~~~i~~----~~~v~~~~~~~  120 (215)
T 3kwz_A           74 YVQKNRGIDSEDAY-------PYVGQ--------EESCMYNPTGK--------------AAKCRG----YREIPEGNEKA  120 (215)
T ss_dssp             HHHHHTCEEBTTTS-------CCCSS--------CCCCCCCGGGE--------------EECCCC----EEECCTTCHHH
T ss_pred             HHHHhCCccccccC-------CCccC--------CCccccCCCCc--------------eeEecc----eEEeCCCCHHH
Confidence            99988 99999888       99876        56676432110              001111    234443 7899


Q ss_pred             HHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCC-CCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCc
Q psy1664         255 IMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGG-PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL  332 (524)
Q Consensus       255 ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~-~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy  332 (524)
                      ||++|+++|||+|+|+++ ++|++|++|||..+.|. ..++|||+|||||++       ++++|||||||||++|||+||
T Consensus       121 ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~~~HaV~iVGyg~~-------~g~~yWivkNSWG~~WG~~Gy  193 (215)
T 3kwz_A          121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-------KGNKHWIIKNSWGENWGNKGY  193 (215)
T ss_dssp             HHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCTTCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHHCCCEEEEEeechhhhhcccCCeECCCCCCCChhhCEEEEEEEecc-------CCceEEEEECCcCcccccCCE
Confidence            999999999999999998 69999999999988774 478999999999986       468999999999999999999


Q ss_pred             cccccccCccCCcCcCCcCCC
Q psy1664         333 FRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       333 ~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      |||+|+.. ..|++...+++|
T Consensus       194 ~~i~r~~~-n~Cgi~~~~~~p  213 (215)
T 3kwz_A          194 ILMARNKN-NACGIANLASFP  213 (215)
T ss_dssp             EEEESSSS-SGGGTTSSCEEE
T ss_pred             EEEecCCC-CccCcCCceeee
Confidence            99999763 269998766554

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=100.00  E-value=1.8e-54  Score=417.12  Aligned_cols=214  Identities=29%  Similarity=0.560  Sum_probs=176.0

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCC-CCCCCCCChHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC-GNGCQGGFHGKAW  175 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~-~~gC~GG~~~~a~  175 (524)
                      ||++||||++    ++++||||||.||||||||++++||++++|+++  ..+.||+|+|+||+... +.||+||++..||
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~~~g~~gC~GG~~~~a~   74 (220)
T 2xu3_A            1 APRSVDWREK----GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAF   74 (220)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTTTTCCTTBCCCHHHHH
T ss_pred             CCCcEeCCCC----CCCCCCcccCcccHHHHHHhHHHHHHHHHHhcC--CceecCHHHHHhhccCCCCCCCCCCCHHHHH
Confidence            7999999998    889999999999999999999999999999985  46999999999998643 5799999999999


Q ss_pred             HHHH-HhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHH
Q psy1664         176 KYWV-TTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEET  254 (524)
Q Consensus       176 ~~~~-~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (524)
                      +|++ +.|+++|++|       ||...        .+.|+.....         .     ......    ...++.++++
T Consensus        75 ~y~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~---------~-----~~~i~~----~~~v~~~~~~  121 (220)
T 2xu3_A           75 QYVQDNGGLDSEESY-------PYEAT--------EESCKYNPKY---------S-----VANDTG----FVDIPKQEKA  121 (220)
T ss_dssp             HHHHHHTCEEBTTTS-------CCCSS--------CCCCCCCGGG---------E-----EECCSE----EEECCSCHHH
T ss_pred             HHHHHhCCccccccc-------CCccc--------CcCccCCCCC---------c-----ceeeee----EEEeCCCHHH
Confidence            9996 6799999888       99876        5667643110         0     001111    2345558999


Q ss_pred             HHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCC-CCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCc
Q psy1664         255 IMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGP-LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL  332 (524)
Q Consensus       255 ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~-~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy  332 (524)
                      ||++|+++|||+|+|+++ ++|++|++|||..+.|.. .++|||+|||||++..   ++++++|||||||||++|||+||
T Consensus       122 ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGygd~~~---~~~g~~yWivkNSWG~~WG~~Gy  198 (220)
T 2xu3_A          122 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKYWLVKNSWGEEWGMGGY  198 (220)
T ss_dssp             HHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCSSCCCEEEEEEEEEECCC---SSSCCEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHhcCCEEEEEeecCcccccccceEEcCCCCCCCCCCeEEEEEEcCCccc---cCCCCcEEEEEeCCCCCcccCcE
Confidence            999999999999999998 589999999999876654 7899999999995311   12578999999999999999999


Q ss_pred             cccccccCccCCcCcCCcCCC
Q psy1664         333 FRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       333 ~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      |||+++.. ..|++...+++|
T Consensus       199 ~~i~~~~~-n~Cgi~~~~~~p  218 (220)
T 2xu3_A          199 VKMAKDRR-NHCGIASAASYP  218 (220)
T ss_dssp             EEEECSSS-SGGGTTTSCEEE
T ss_pred             EEEecCCC-CcCCccccceee
Confidence            99999752 258887665443

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=100.00  E-value=2.7e-54  Score=414.00  Aligned_cols=207  Identities=26%  Similarity=0.542  Sum_probs=173.5

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..||+
T Consensus         1 lP~~~DwR~~----~~vt~VkdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~   73 (214)
T 1m6d_A            1 APPEWDWRSK----GAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQG--TLLSLSEQELLDCDK-MDKACMGGLPSNAYS   73 (214)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCS-SSCTTBCCCHHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHHcC--CCcccCHHHHHHhcC-CCCCCCCCCHHHHHH
Confidence            7999999998    899999999999999999999999999999875  469999999999974 367999999999999


Q ss_pred             HHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHH
Q psy1664         177 YWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETI  255 (524)
Q Consensus       177 ~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  255 (524)
                      |++++ |+++|++|       ||.+.        ...|+.....         .         ..+....+.++.++++|
T Consensus        74 ~i~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~---------~---------~~~i~~~~~i~~~~~~i  120 (214)
T 1m6d_A           74 AIKNLGGLETEDDY-------SYQGH--------MQSCQFSAEK---------A---------KVYIQDSVELSQNEQKL  120 (214)
T ss_dssp             HHHHHTCBCBTTTS-------CCCSS--------CCCCCCCGGG---------C---------CBCCSEEEECCSCHHHH
T ss_pred             HHHHhcCcccccCc-------CcCCC--------CCcCCCCccc---------c---------eEEecCEEEeChHHHHH
Confidence            99987 89999888       99865        5667643110         0         00111234566789999


Q ss_pred             HHHHHHcCCeEEEEEecccccccCCceEEcC--CCCC-CCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCc
Q psy1664         256 MREIFRHGPVEGSMTIYADMILYKTGIYKHV--AGGP-LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL  332 (524)
Q Consensus       256 k~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~--~~~~-~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy  332 (524)
                      |++|+++|||+|+|+++ +|++|++|||..+  .|.. .++|||+|||||++       ++++|||||||||++|||+||
T Consensus       121 k~~l~~~GPV~v~i~~~-~f~~Y~~Giy~~~~~~c~~~~~~HaV~iVGyg~~-------~g~~yWivkNSWG~~WGe~Gy  192 (214)
T 1m6d_A          121 AAWLAKRGPISVAINAF-GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQR-------SDVPFWAIKNSWGTDWGEKGY  192 (214)
T ss_dssp             HHHHHHHCCEEEEECTH-HHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHhCCCEEEEEEec-hhhhcCCceecCCCCcCCCCcCCEEEEEEEEeec-------CCcEEEEEEeCCCCCcccCcE
Confidence            99999999999999997 5999999999864  3543 68999999999986       478999999999999999999


Q ss_pred             cccccccCccCCcCcCCcCCC
Q psy1664         333 FRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       333 ~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      |||+++..  .|++....+++
T Consensus       193 ~~i~r~~n--~Cgi~~~~~~~  211 (214)
T 1m6d_A          193 YYLHRGSG--ACGVNTMASSA  211 (214)
T ss_dssp             EEEESSSC--GGGTTTTCEEE
T ss_pred             EEEEcCCC--ccccCceeEEE
Confidence            99999854  68887655443

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=100.00  E-value=4.5e-54  Score=412.78  Aligned_cols=206  Identities=27%  Similarity=0.549  Sum_probs=169.4

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    |+|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..||+
T Consensus         1 lP~~~Dwr~~----g~vtpVkdQg~cGsCWAfa~~~ale~~~~i~~~--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~   73 (215)
T 3i06_A            1 APAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGH--PLTNLSEQMLVSCDK-TDSGCSGGLMNNAFE   73 (215)
T ss_dssp             CCSEEEGGGG----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHTTS--CCCCCCHHHHHHHCS-SSCGGGCCCHHHHHH
T ss_pred             CCCcccCCcC----CCCCCCCCCCCCccHHHHHHHHHHHHHHHHhCC--CCCccCHHHHhccCC-CCCCCCCCCHHHHHH
Confidence            7999999998    899999999999999999999999999999864  579999999999964 467999999999999


Q ss_pred             HHHHh---CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHH
Q psy1664         177 YWVTT---GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEE  253 (524)
Q Consensus       177 ~~~~~---Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (524)
                      |++++   |+++|++|       ||...     .+....|.......         .+     .    ....+.++.+++
T Consensus        74 y~~~~~~gGi~~e~~y-------PY~~~-----~~~~~~C~~~~~~~---------~~-----~----i~~~~~v~~~~~  123 (215)
T 3i06_A           74 WIVQENNGAVYTEDSY-------PYASG-----EGISPPCTTSGHTV---------GA-----T----ITGHVELPQDEA  123 (215)
T ss_dssp             HHHHHSTTEEEC-CCS-------CCCCT-----TSCCCCCCCSSCCE---------EE-----E----EEEEEECCSCHH
T ss_pred             HHHHhccccccccCcc-------CCcCC-----CCCCCccccCCccc---------ce-----E----ecceEEeCChHH
Confidence            99986   69998888       99864     11123454322100         00     0    112346677899


Q ss_pred             HHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcc
Q psy1664         254 TIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF  333 (524)
Q Consensus       254 ~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~  333 (524)
                      +||++|+++|||+|+|++ ++|++|++|||.. +....++|||+|||||++       ++++|||||||||++|||+|||
T Consensus       124 ~ik~~l~~~gPV~v~~~~-~~f~~Y~~Giy~~-~~~~~~~HaV~iVGyg~~-------~g~~yWivkNSWG~~WGe~Gy~  194 (215)
T 3i06_A          124 QIAAWLAVNGPVAVAVDA-SSWMTYTGGVMTS-CVSEQLDHGVLLVGYNDS-------AAVPYWIIKNSWTTQWGEEGYI  194 (215)
T ss_dssp             HHHHHHHHHCCEEEEECC-TTGGGCCSSEECS-CCCSCCCEEEEEEEEESS-------SSSCEEEEECSBCTTSTBTTEE
T ss_pred             HHHHHHHHCCCEEEEEEc-hHHhcCCCCcccC-CCCCccCcEEEEEEEecc-------CCcEEEEEECCCCCCcccCceE
Confidence            999999999999999999 6899999999974 334567999999999976       4689999999999999999999


Q ss_pred             ccccccCccCCcCcCCc
Q psy1664         334 RIGCRPYEIPCERYMNG  350 (524)
Q Consensus       334 ri~~~~~~~~c~~~~~~  350 (524)
                      ||+++.+  .|++...+
T Consensus       195 ~i~rg~n--~cgi~~~~  209 (215)
T 3i06_A          195 RIAKGSN--QCLVKEEA  209 (215)
T ss_dssp             EEESSSC--GGGTTSSE
T ss_pred             EEecCCC--eecCCCce
Confidence            9999864  68887654

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=100.00  E-value=6.8e-54  Score=411.64  Aligned_cols=209  Identities=31%  Similarity=0.558  Sum_probs=172.7

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    +.|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..||+
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~   73 (216)
T 1ppo_A            1 LPENVDWRKK----GAVTPVRHQGSCGSCWAFSAVATVEGINKIRTG--KLVELSEQELVDCER-RSHGCKGGYPPYALE   73 (216)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCS-SSCTTBCCCHHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCCcCccHHHHHHHHHHHHHHHHccC--CceecCHHHHHhccC-CCCCCCCCCHHHHHH
Confidence            7999999998    889999999999999999999999999999886  469999999999975 467999999999999


Q ss_pred             HHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecC-CCHHHH
Q psy1664         177 YWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANEETI  255 (524)
Q Consensus       177 ~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i  255 (524)
                      |++++|+++|++|       ||...        .+.|+......        +.+     ....|    ..++ .++++|
T Consensus        74 yi~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~--------~~~-----~i~~y----~~v~~~~~~~i  121 (216)
T 1ppo_A           74 YVAKNGIHLRSKY-------PYKAK--------QGTCRAKQVGG--------PIV-----KTSGV----GRVQPNNEGNL  121 (216)
T ss_dssp             HHHHHCBCBTTTS-------CCCSS--------CCCCCGGGCCS--------CCB-----CCCEE----EECCSSCHHHH
T ss_pred             HHHHhCcCccccC-------CccCC--------CCCcCCCCCCC--------ceE-----EeccE----EEECCCCHHHH
Confidence            9999999998888       99875        56675432100        000     11111    2345 368889


Q ss_pred             HHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccc
Q psy1664         256 MREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR  334 (524)
Q Consensus       256 k~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~r  334 (524)
                      |++|++ |||+|+|+++ ++|++|++|||+.+ |...++|||+|||||++       ++++|||||||||++|||+||||
T Consensus       122 ~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~~~-~~~~~~HaV~iVGyg~~-------~g~~ywivkNSWG~~WG~~Gy~~  192 (216)
T 1ppo_A          122 LNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP-CGTKVDHAVTAVGYGKS-------GGKGYILIKNSWGTAWGEKGYIR  192 (216)
T ss_dssp             HHHHHH-SCEEEEECCCSHHHHHCCSSEECCS-CCSCCCEEEEEEEEEEE-------TTEEEEEEECSBCSSSTBTTEEE
T ss_pred             HHHHHh-CCEEEEEecCChhhhhcCCceECCC-CCCCCCEEEEEEEeecc-------CCccEEEEEeCCCCCcccCcEEE
Confidence            999986 9999999997 79999999999875 45567999999999987       46899999999999999999999


Q ss_pred             cccccC--ccCCcCcCCcCCC
Q psy1664         335 IGCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       335 i~~~~~--~~~c~~~~~~~~~  353 (524)
                      |+++..  ...|++...+++|
T Consensus       193 i~~~~~~~~n~Cgi~~~~~~p  213 (216)
T 1ppo_A          193 IKRAPGNSPGVCGLYKSSYYP  213 (216)
T ss_dssp             EECCCSSSSCGGGTTSCCEEE
T ss_pred             EEcCCCCCCCcCccccceeeE
Confidence            999753  2468887665544

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=100.00  E-value=2.6e-54  Score=416.21  Aligned_cols=209  Identities=28%  Similarity=0.576  Sum_probs=176.4

Q ss_pred             CCCccccccCCCCCC-CCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCC-CCCCCCCChHHH
Q psy1664          97 LPEGFDARINWPYCP-TIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC-GNGCQGGFHGKA  174 (524)
Q Consensus        97 lP~s~DwR~~~~~~g-~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~-~~gC~GG~~~~a  174 (524)
                      ||++||||++    + +|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+... +.||+||++..|
T Consensus         1 lP~~~DwR~~----~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a   74 (220)
T 8pch_A            1 YPPSMDWRKK----GNFVSPVKNQGSCGSCWTFSTTGALESAVAIATG--KMLSLAEQQLVDCAQNFNNHGCQGGLPSQA   74 (220)
T ss_dssp             CCSCEEHHHH----SSCSCCCCBCTTSCCHHHHHHHHHHHHHHHHHHC--CCCCBCHHHHHHHGGGGTCCGGGCCCHHHH
T ss_pred             CCCCEecCcC----CCcCCcccccCCCchHHHHHHHHHHHHHHHHHcC--CCCCCCHHHHhhCcCccCCCCCCCCCHHHH
Confidence            7999999998    6 79999999999999999999999999999986  46999999999998543 569999999999


Q ss_pred             HHHHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecC-CCH
Q psy1664         175 WKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANE  252 (524)
Q Consensus       175 ~~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  252 (524)
                      ++|++++ |+++|++|       ||...        .+.|+..+....              ..    ......++ .++
T Consensus        75 ~~~~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~~--------------~~----i~~~~~v~~~~~  121 (220)
T 8pch_A           75 FEYIRYNKGIMGEDTY-------PYKGQ--------DDHCKFQPDKAI--------------AF----VKDVANITMNDE  121 (220)
T ss_dssp             HHHHHHHTCEEBTTTS-------CCCSS--------CCCCCCCGGGEE--------------EC----EEEEEECCTTCH
T ss_pred             HHHHHHcCCcCccccc-------CccCC--------CCCCCCCCCcce--------------EE----eCCEEEeCCCCH
Confidence            9999998 99999988       99875        566764321100              00    01123444 478


Q ss_pred             HHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCC---CCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccc
Q psy1664         253 ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGP---LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE  329 (524)
Q Consensus       253 ~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~---~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe  329 (524)
                      ++||++|+++|||+++|+++++|++|++|||..+.|..   .++|||+|||||++       ++++|||||||||++|||
T Consensus       122 ~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~-------~g~~yWivkNSWG~~WGe  194 (220)
T 8pch_A          122 EAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEE-------NGIPYWIVKNSWGPQWGM  194 (220)
T ss_dssp             HHHHHHHHHTCCEEEEECCCHHHHTCCSSEECCSSCCCSTTTCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTB
T ss_pred             HHHHHHHHhcCCEEEEEEeccchhhcCCCcccCCcCCCCCCcCCcEEEEEEEEcc-------CCeeEEEEECCCCcCccc
Confidence            99999999999999999999999999999999887654   58999999999976       478999999999999999


Q ss_pred             cCccccccccCccCCcCcCCcCCC
Q psy1664         330 NGLFRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       330 ~Gy~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      +|||||+++..  .|++.+.+++|
T Consensus       195 ~Gy~~i~r~~n--~cgi~~~~~~~  216 (220)
T 8pch_A          195 NGYFLIERGKN--MCGLAACASYP  216 (220)
T ss_dssp             TTEEEEECSSC--GGGTTTSCEEE
T ss_pred             CCEEEEEcCCC--ccccCCCceeE
Confidence            99999999864  69987766443

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=100.00  E-value=3.7e-54  Score=415.37  Aligned_cols=209  Identities=26%  Similarity=0.518  Sum_probs=172.0

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+.. +.||+||++..|++
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGSCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~   73 (222)
T 3u8e_A            1 APASIDWRKK----GAVTSVKDQGACGMCWAFGATGAIEGIDAITTG--RLISVSEQQIVDCDTX-XXXXXGGDADDAFR   73 (222)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSCSSCTTTTHHHHHHHHHHHHHS--CCCCBCHHHHHHHCC-------CCCHHHHHH
T ss_pred             CCCcCcCCcC----CCCCCcccCCCCccHHHHHHHHHHHHHHHHHcC--CCcccCHHHHHhccCc-ccccCCCCHHHHHH
Confidence            7999999999    899999999999999999999999999999986  4699999999999764 67999999999999


Q ss_pred             HHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHH
Q psy1664         177 YWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETI  255 (524)
Q Consensus       177 ~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  255 (524)
                      |++++ |+++|++|       ||...        .+.|......          .     .....    ...++.++++|
T Consensus        74 ~~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~----------~-----~~i~~----~~~v~~~~~~i  119 (222)
T 3u8e_A           74 WVITNGGIASDANY-------PYTGV--------DGTCDLNKPI----------A-----ARIDG----YTNVPNSSSAL  119 (222)
T ss_dssp             HHHHHTCBCBTTTS-------CCCSS--------CCCCCCCSCC----------C-----BCCCE----EEECCSCHHHH
T ss_pred             HHHHcCCccchhcC-------CCccc--------CCccccCCCC----------e-----EEEcc----EEEeCCcHHHH
Confidence            99999 99999888       99876        6677653221          0     01111    23455678899


Q ss_pred             HHHHHHcCCeEEEEEecc-cccccCC-ceEEcCCCCC---CCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCccccc
Q psy1664         256 MREIFRHGPVEGSMTIYA-DMILYKT-GIYKHVAGGP---LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGEN  330 (524)
Q Consensus       256 k~~l~~~GPV~v~i~v~~-~f~~Y~s-GIy~~~~~~~---~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~  330 (524)
                      |++| .+|||+|+|+++. +|++|++ |||..+.|..   .++|||+|||||++.      ++++|||||||||++|||+
T Consensus       120 ~~~l-~~GPV~v~i~~~~~~f~~Y~~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~------~g~~yWivkNSWG~~WGe~  192 (222)
T 3u8e_A          120 LDAV-AKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNG------TNADYWIVKNSWGTEWGID  192 (222)
T ss_dssp             HHHH-HHSCEEEEECCCSHHHHTCCCSSCBCCTTCCCCGGGCCEEEEEEEEEESS------TTCEEEEEECSBCTTSTBT
T ss_pred             HHHH-hCCCEEEEEEecChhhhcEeCCceECCCcccCCCCcCCEEEEEEEEeecC------CCCcEEEEECCCCCCcccC
Confidence            9998 6799999999985 8999999 9999866655   689999999999872      2689999999999999999


Q ss_pred             CccccccccC--ccCCcCcCCcCCC
Q psy1664         331 GLFRIGCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       331 Gy~ri~~~~~--~~~c~~~~~~~~~  353 (524)
                      |||||+|+..  ...|++.+.+++|
T Consensus       193 Gy~~i~r~~~~~~g~Cgi~~~~~~p  217 (222)
T 3u8e_A          193 GYILIRRNTNRPDGVCAIDAWGSYP  217 (222)
T ss_dssp             TEEEEECSCSCTTCGGGTTSSCEEE
T ss_pred             CEEEEEcCCCCCCCcCCccccceEE
Confidence            9999999865  2479988776655

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=100.00  E-value=7e-54  Score=412.66  Aligned_cols=210  Identities=30%  Similarity=0.586  Sum_probs=176.6

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhc-CC-CCCCCCCCChHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCC-KD-CGNGCQGGFHGKA  174 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~-~~-~~~gC~GG~~~~a  174 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++++++  ..+.||+|+|+||+ .. .+.||+||++..|
T Consensus         2 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~~~~gC~GG~~~~a   75 (218)
T 3ovx_A            2 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTA   75 (218)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHSCGGGTCCGGGCCCHHHH
T ss_pred             CCCCCCcccC----CCCCCCccCCCCccHHHHHHHHHHHHHHHHHcC--CccccCHHHheeccCCcCCCCCCCCCCHHHH
Confidence            8999999998    899999999999999999999999999999986  46899999999997 32 3579999999999


Q ss_pred             HHHHHH-hCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecC-CCH
Q psy1664         175 WKYWVT-TGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANE  252 (524)
Q Consensus       175 ~~~~~~-~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  252 (524)
                      ++|+++ .|+++|++|       ||...        .+.|.......              ......|    ..++ .++
T Consensus        76 ~~~~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~--------------~~~i~~~----~~~~~~~~  122 (218)
T 3ovx_A           76 FQYIIDNKGIDSDASY-------PYKAM--------DQKCQYDSKYR--------------AATCSKY----TELPYGRE  122 (218)
T ss_dssp             HHHHHHHTCEEBTTTS-------CCCSS--------CCCCCCCGGGE--------------EECCCEE----EECCTTCH
T ss_pred             HHHHHHhCCcCccccc-------CccCC--------CCcccCCCccc--------------eeeeccE----EEeCCCCH
Confidence            999976 699999888       99876        56676432110              0111112    2344 478


Q ss_pred             HHHHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccC
Q psy1664         253 ETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG  331 (524)
Q Consensus       253 ~~ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~G  331 (524)
                      ++||++|+++|||+++|++. ++|++|++|||..+.|...++|||+|||||++       ++++|||||||||++|||+|
T Consensus       123 ~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~-------~g~~ywivkNSWG~~WG~~G  195 (218)
T 3ovx_A          123 DVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-------NGKEYWLVKNSWGHNFGEEG  195 (218)
T ss_dssp             HHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECCTTCCSCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTT
T ss_pred             HHHHHHHHhcCCEEEEEEecchhhhcccCceecCCCCCcccCcEEEEEEEecc-------CCceEEEEECCCCCccccCC
Confidence            99999999999999999997 58999999999998887789999999999987       46899999999999999999


Q ss_pred             ccccccccCccCCcCcCCcCCC
Q psy1664         332 LFRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       332 y~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      ||||+++.. ..|++...+++|
T Consensus       196 y~~i~~~~~-n~cgi~~~~~~p  216 (218)
T 3ovx_A          196 YIRMARNKG-NHCGIASFPSYP  216 (218)
T ss_dssp             EEEEECSSS-SGGGTTTSCEEE
T ss_pred             EEEEecCCC-CcccccCceeee
Confidence            999999762 369987766554

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=100.00  E-value=1.1e-53  Score=417.73  Aligned_cols=213  Identities=29%  Similarity=0.531  Sum_probs=175.0

Q ss_pred             CCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHH
Q psy1664          96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAW  175 (524)
Q Consensus        96 ~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~  175 (524)
                      +||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..||
T Consensus         1 ~lP~~~DwR~~----g~vtpVkdQg~CGsCWAfa~~~~lE~~~~i~~g--~~~~LS~q~lvdC~~-~~~gC~GG~~~~a~   73 (246)
T 2b1m_A            1 DAPESWDWSKK----GVITKVKFQGQCGSGWAFSATGAIEAAHAIATG--NLVSLSEQELIDCVD-ESEGCYNGWHYQSF   73 (246)
T ss_dssp             -CCSCEEGGGT----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSBTTTBCCHHHHH
T ss_pred             CCCCcCCCCCC----CCCCCcccCCCCchHHHHHHHHHHHHHHHHHcC--CCcccCHHHHHhhcC-CCCCCCCCCHHHHH
Confidence            48999999998    899999999999999999999999999999886  469999999999975 46799999999999


Q ss_pred             HHHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecC-CCHH
Q psy1664         176 KYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANEE  253 (524)
Q Consensus       176 ~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  253 (524)
                      +|++++ |+++|++|       ||...        .+.|+......         .     .....|+. ...++ .+++
T Consensus        74 ~y~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~---------~-----~~i~~y~~-~~~v~~~~~~  123 (246)
T 2b1m_A           74 EWVVKHGGIASEADY-------PYKAR--------DGKCKANEIQD---------K-----VTIDNYGV-QILSNESTES  123 (246)
T ss_dssp             HHHHHTTCBCBTTTS-------CCCSS--------CCCCCGGGCCC---------C-----BCCSEEEE-EECCTTSCHH
T ss_pred             HHHHHhCCcCccccc-------cccCC--------CCcCcCCCCCC---------c-----eeEcCcce-eeecCCChHH
Confidence            999998 99998888       99876        56676431100         0     01112211 03455 4788


Q ss_pred             HHHHHHHH---cCCeEEEEEecccccccCCceEEcCCCCCC--CCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCccc
Q psy1664         254 TIMREIFR---HGPVEGSMTIYADMILYKTGIYKHVAGGPL--GEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWG  328 (524)
Q Consensus       254 ~ik~~l~~---~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~--~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WG  328 (524)
                      +||++|++   +|||+|+|++ ++|++|++|||..+.|...  ++|||+|||||++       ++++|||||||||++||
T Consensus       124 ~ik~~l~~~~~~GPV~v~i~~-~~f~~Y~~Giy~~~~c~~~~~~~HaV~iVGyg~~-------~g~~yWivkNSWG~~WG  195 (246)
T 2b1m_A          124 EAESSLQSFVLEQPISVSIDA-KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSE-------DGVDYWIAKNSWGEDWG  195 (246)
T ss_dssp             HHHHHHHHHHHHSCEEEEECC-TTGGGCCSSEECCTTCCSSCCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTST
T ss_pred             HHHHHHHhhccCCCEEEEEEc-chhhcccceeecCCCCCCCCcCceEEEEEEEecc-------CCceEEEEEeCCCCccc
Confidence            99999999   6999999999 9999999999998666554  8999999999986       46899999999999999


Q ss_pred             ccCccccccccC--ccCCcCcCCcCCC
Q psy1664         329 ENGLFRIGCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       329 e~Gy~ri~~~~~--~~~c~~~~~~~~~  353 (524)
                      |+|||||+++..  ...|++.+.+++|
T Consensus       196 e~Gy~~i~~~~~~~~n~CgI~~~~~~p  222 (246)
T 2b1m_A          196 IDGYIRIQRNTGNLLGVCGMNYFASYP  222 (246)
T ss_dssp             BTTEEEEECCSSCTTCGGGTTSEEEEE
T ss_pred             CCcEEEEEcCCCCCCccccccceeeEE
Confidence            999999999762  1368887655444

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=100.00  E-value=1.4e-53  Score=410.82  Aligned_cols=209  Identities=30%  Similarity=0.584  Sum_probs=173.2

Q ss_pred             CCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHH
Q psy1664          96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAW  175 (524)
Q Consensus        96 ~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~  175 (524)
                      +||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+.. +.||+||++..||
T Consensus         2 ~lP~~~DwR~~----~~v~~VkdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~   74 (221)
T 1cqd_A            2 DLPDSIDWREN----GAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTG--DLISLSEQQLVDCTTA-NHGCRGGWMNPAF   74 (221)
T ss_dssp             -CCSCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCCCHHHHH
T ss_pred             CCCCcCcCCCC----CCcCCcccCCCCccHHHHHHHHHHHHHHHHhcC--CeeeeccceeEECCCC-CCCCCCCCHHHHH
Confidence            69999999998    889999999999999999999999999999986  4689999999999754 6799999999999


Q ss_pred             HHHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCC-CHH
Q psy1664         176 KYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-NEE  253 (524)
Q Consensus       176 ~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  253 (524)
                      +|++++ |+++|++|       ||...        .+.|.......         .+     ....|    ..++. +++
T Consensus        75 ~y~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~---------~~-----~i~~y----~~v~~~~~~  121 (221)
T 1cqd_A           75 QFIVNNGGINSEETY-------PYRGQ--------DGICNSTVNAP---------VV-----SIDSY----ENVPSHNEQ  121 (221)
T ss_dssp             HHHHHHTSBCBTTTS-------CCCSS--------CCCCCSSSCCC---------SB-----CCSEE----EECCSSCHH
T ss_pred             HHHHHhCCccccccC-------CccCC--------CCCcCCCCCCc---------eE-----EeccE----EEeCCchHH
Confidence            999987 99999888       99875        56676432110         00     11111    23444 588


Q ss_pred             HHHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCc
Q psy1664         254 TIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL  332 (524)
Q Consensus       254 ~ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy  332 (524)
                      +||++|++ |||+|+|+++ ++|++|++|||+.+ |...++|||+|||||++       ++++|||||||||++|||+||
T Consensus       122 ~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~-~~~~~~HaV~iVGyg~~-------~g~~yWivkNSWG~~WGe~Gy  192 (221)
T 1cqd_A          122 SLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTGS-CNISANHALTVVGYGTE-------NDKDFWIVKNSWGKNWGESGY  192 (221)
T ss_dssp             HHHHHHTT-SCEEEEECCCSHHHHTCCSSEECCC-CCCCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHHh-CCEEEEEeccCcccccccCccccCC-CCCcCCeEEEEEEEccc-------CCCcEEEEEeCCCCCcccCCE
Confidence            89988865 9999999998 79999999999875 55578999999999986       478999999999999999999


Q ss_pred             cccccccC--ccCCcCcCCcCCC
Q psy1664         333 FRIGCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       333 ~ri~~~~~--~~~c~~~~~~~~~  353 (524)
                      |||+++..  ...|++...+++|
T Consensus       193 ~~i~r~~~~~~~~Cgi~~~~~~p  215 (221)
T 1cqd_A          193 IRAERNIENPDGKCGITRFASYP  215 (221)
T ss_dssp             EEEECSCSSTTCGGGTTSSCEEE
T ss_pred             EEEEcCCCCCCcccceeeeeeEE
Confidence            99999753  2469887766555

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=100.00  E-value=2.1e-53  Score=407.83  Aligned_cols=207  Identities=29%  Similarity=0.522  Sum_probs=172.0

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+.. +.||+||++..||+
T Consensus         1 lP~~~DwR~~----~~v~~VkdQg~cGsCWAfa~~~~~e~~~~i~~g--~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~   73 (215)
T 1iwd_A            1 LPSFVDWRSK----GAVNSIKNQKQCGSCWAFSAVAAVESINKIRTG--QLISLSEQELVDCDTA-SHGCNGGWMNNAFQ   73 (215)
T ss_dssp             CCSCEEGGGG----TCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCCCHHHHHH
T ss_pred             CCCcEeCCCC----CCCCCcccCCCCchHHHHHHHHHHHHHHHHhcC--CccccChhHeEECcCC-CCCCCCCCHHHHHH
Confidence            7999999998    899999999999999999999999999999875  4699999999999753 67999999999999


Q ss_pred             HHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecC-CCHHH
Q psy1664         177 YWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANEET  254 (524)
Q Consensus       177 ~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  254 (524)
                      |++++ |+++|++|       ||...        .+.|.....          ..+     ....|    ..++ .++++
T Consensus        74 ~~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~----------~~~-----~i~~~----~~v~~~~~~~  119 (215)
T 1iwd_A           74 YIITNGGIDTQQNY-------PYSAV--------QGSCKPYRL----------RVV-----SINGF----QRVTRNNESA  119 (215)
T ss_dssp             HHHHHTCBCBTTTS-------CCCSS--------CCCCCTTCC----------CCB-----CCCEE----EECCTTCHHH
T ss_pred             HHHHhCCccccccc-------CccCC--------CCCCCCCCC----------ceE-----EeCcE----EEeCCCcHHH
Confidence            99997 99999888       99875        567764321          000     11111    2344 36788


Q ss_pred             HHHHHHHcCCeEEEEEecc-cccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcc
Q psy1664         255 IMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF  333 (524)
Q Consensus       255 ik~~l~~~GPV~v~i~v~~-~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~  333 (524)
                      ||++|++ |||+|+|+++. +|++|++|||..+ |...++|||+|||||++       ++++|||||||||++|||+|||
T Consensus       120 ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~-c~~~~~HaV~iVGyg~~-------~g~~yWivkNSWG~~WGe~Gy~  190 (215)
T 1iwd_A          120 LQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTGP-CGTAQNHGVVIVGYGTQ-------SGKNYWIVRNSWGQNWGNQGYI  190 (215)
T ss_dssp             HHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-CCCCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTEE
T ss_pred             HHHHHHh-CCEEEEEecCCcchhhcCCceECCC-CCCcCCEEEEEEEEecc-------CCccEEEEEeCCCCCcCCCcEE
Confidence            8888875 99999999986 8999999999875 44578999999999986       4789999999999999999999


Q ss_pred             ccccccC--ccCCcCcCCcCCC
Q psy1664         334 RIGCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       334 ri~~~~~--~~~c~~~~~~~~~  353 (524)
                      ||+++..  ...|++...+++|
T Consensus       191 ~i~~~~~~~~~~Cgi~~~~~~p  212 (215)
T 1iwd_A          191 WMERNVASSAGLCGIAQLPSYP  212 (215)
T ss_dssp             EEECSCSSTTCGGGTTSSCEEE
T ss_pred             EEEcCCCCCCCCCCccccceee
Confidence            9999752  2468887665444

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=100.00  E-value=1.4e-53  Score=410.10  Aligned_cols=209  Identities=24%  Similarity=0.545  Sum_probs=172.4

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    +.|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+ ..+.||+||++..||+
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~-~~~~gC~GG~~~~a~~   73 (218)
T 1yal_A            1 YPQSIDWRAK----GAVTPVKNQGACGSCWAFSTIATVEGINKIVTG--NLLELSEQELVDCD-KHSYGCKGGYQTTSLQ   73 (218)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHC-TTSCTTBCCCHHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCccchhHHHHHHHHHHHHHHHHhcC--CccccCHHHHHHhc-CCCCCCCCCCHHHHHH
Confidence            7999999998    889999999999999999999999999999886  46999999999997 3467999999999999


Q ss_pred             HHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCC-CHHHH
Q psy1664         177 YWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-NEETI  255 (524)
Q Consensus       177 ~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i  255 (524)
                      |++++|+++|++|       ||...        .+.|+......        ..+     ....|    ..++. ++++|
T Consensus        74 ~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~--------~~~-----~i~~y----~~v~~~~~~~i  121 (218)
T 1yal_A           74 YVANNGVHTSKVY-------PYQAK--------QYKCRATDKPG--------PKV-----KITGY----KRVPSNCETSF  121 (218)
T ss_dssp             HHHHHCBCBTTTS-------CCCSS--------CCCCCGGGCCS--------CCB-----CCSEE----EECCSSBHHHH
T ss_pred             HHHHcCCCccccc-------cccCC--------CCCcccCcCCC--------ceE-----EEeeE----EEeCCCCHHHH
Confidence            9999999998888       99875        56676432100        000     11111    23453 67888


Q ss_pred             HHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccc
Q psy1664         256 MREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR  334 (524)
Q Consensus       256 k~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~r  334 (524)
                      |++|++ |||+|+|+++ ++|++|++|||+.+ |...++|||+|||||++       ++++|||||||||++|||+||||
T Consensus       122 ~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~-~~~~~~HaV~iVGyg~~-------~g~~yWivkNSWG~~WGe~Gy~~  192 (218)
T 1yal_A          122 LGALAN-QPLSVLVEAGGKPFQLYKSGVFDGP-CGTKLDHAVTAVGYGTS-------DGKNYIIIKNSWGPNWGEKGYMR  192 (218)
T ss_dssp             HHHHTT-SCEEEEECCCSHHHHTCCSSEECCS-CCSCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTEEE
T ss_pred             HHHHHh-CCEEEEEeccchhccccCCceECCC-CCCCCCEEEEEEEeecc-------CCccEEEEEeCCCCCcccCcEEE
Confidence            888876 9999999997 79999999999875 45568999999999987       46899999999999999999999


Q ss_pred             cccccC--ccCCcCcCCcCCC
Q psy1664         335 IGCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       335 i~~~~~--~~~c~~~~~~~~~  353 (524)
                      |+++..  ...|++...+++|
T Consensus       193 i~~~~~~~~~~Cgi~~~~~~p  213 (218)
T 1yal_A          193 LKRQSGNSQGTCGVYKSSYYP  213 (218)
T ss_dssp             EECCCSBSCCGGGTTSSCEEE
T ss_pred             EECCCCCCCCccccccceeeE
Confidence            999752  2468887766554

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=100.00  E-value=1.2e-53  Score=409.10  Aligned_cols=206  Identities=28%  Similarity=0.505  Sum_probs=172.1

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..|++
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~   73 (213)
T 3ioq_A            1 IPTSIDWRQK----GAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTG--QLLSLSEQELLDCER-RSYGCRGGFPLYALQ   73 (213)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSCTTBCCCHHHHHH
T ss_pred             CCCCCCcccC----CCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcC--CCcccCHHHhhhhcC-CCCCCCCCCHHHHHH
Confidence            7999999999    899999999999999999999999999999986  469999999999975 467999999999999


Q ss_pred             HHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHH
Q psy1664         177 YWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM  256 (524)
Q Consensus       177 ~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik  256 (524)
                      |++++|+++|++|       ||...        .+.|........        .     .+..    ....++.++++++
T Consensus        74 ~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~~--------~-----~~i~----~~~~v~~~~~~~~  121 (213)
T 3ioq_A           74 YVANSGIHLRQYY-------PYEGV--------QRQCRASQAKGP--------K-----VKTD----GVGRVPRNNEQAL  121 (213)
T ss_dssp             HHHHHCEEBGGGS-------CCCSS--------CCCCCGGGCCSC--------E-----ECCC----EEEECCSSCHHHH
T ss_pred             HHHHcCCCchhcc-------CcCCC--------CCCCCCCccCCc--------e-----EEec----cEEEeCCchHHHH
Confidence            9999999999999       99865        566754211100        0     0111    1235566667777


Q ss_pred             HHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcccc
Q psy1664         257 REIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI  335 (524)
Q Consensus       257 ~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri  335 (524)
                      ++++.+|||+|+|+++ ++|+.|++|||.. .|...++|||+|||||+           +|||||||||++|||+|||||
T Consensus       122 ~~~~~~GPV~v~i~~~~~~f~~y~~Giy~~-~~~~~~~HaV~iVGyg~-----------~yWivkNSWG~~WGe~Gy~~i  189 (213)
T 3ioq_A          122 IQRIAIQPVSIVVEAKGRAFQNYRGGIFAG-PCGTSIDHAVAAVGYGN-----------DYILIKNSWGTGWGEGGYIRI  189 (213)
T ss_dssp             HHHHTTSCEEEEECCCSHHHHTCCSSEECC-SCCSCCCEEEEEEEEET-----------TEEEEECSBCTTSTBTTEEEE
T ss_pred             HHHHHhCCEEEEEEechhhhhhccCCeEcC-CCCCccCceEEEEecCC-----------CeEEEECCCCCCcccCCeEEE
Confidence            7888889999999998 7999999999988 45667899999999994           699999999999999999999


Q ss_pred             ccccC--ccCCcCcCCcCCC
Q psy1664         336 GCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       336 ~~~~~--~~~c~~~~~~~~~  353 (524)
                      +|+..  ...|++.+.+++|
T Consensus       190 ~r~~~~~~~~Cgi~~~~~~p  209 (213)
T 3ioq_A          190 KRGSGNPQGACGVLSDSVFP  209 (213)
T ss_dssp             ESSCSSTTCGGGTTSCCEEE
T ss_pred             EcCCCCCCCcccccCcceEe
Confidence            99763  2479988766554

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=100.00  E-value=1.1e-53  Score=420.03  Aligned_cols=216  Identities=26%  Similarity=0.551  Sum_probs=175.0

Q ss_pred             CCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHH
Q psy1664          95 EELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA  174 (524)
Q Consensus        95 ~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a  174 (524)
                      .+||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+...+.||+||++..|
T Consensus         2 ~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g--~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a   75 (262)
T 2fo5_A            2 SDLPPSVDWRQK----GAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTG--SLVSLSEQELIDCDTADNDGCQGGLMDNA   75 (262)
T ss_dssp             -CCCSCEETTTT----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCCSSCCGGGCBCHHHH
T ss_pred             CCCCCcccCCCC----CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcC--CCCCcCHHHHHhhcCCCCCCCCCCCHHHH
Confidence            469999999998    899999999999999999999999999999986  46999999999998645679999999999


Q ss_pred             HHHHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecC-CCH
Q psy1664         175 WKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANE  252 (524)
Q Consensus       175 ~~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  252 (524)
                      |+|++++ |+++|++|       ||...        .+.|+....      ....+ +   ......    ...++ .++
T Consensus        76 ~~yi~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~------~~~~~-~---~~~i~~----y~~v~~~~e  126 (262)
T 2fo5_A           76 FEYIKNNGGLITEAAY-------PYRAA--------RGTCNVARA------AQNSP-V---VVHIDG----HQDVPANSE  126 (262)
T ss_dssp             HHHHHHTTCEEBTTTS-------CCCSS--------CCCCCHHHH------HHHCC-C---EECCCE----EEECCTTCH
T ss_pred             HHHHHHcCCcCchhcC-------CCcCc--------cCccCCccc------ccCCc-e---eEEece----EEEcCCchH
Confidence            9999998 99998888       99875        566753210      00000 0   001111    23455 367


Q ss_pred             HHHHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccC
Q psy1664         253 ETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENG  331 (524)
Q Consensus       253 ~~ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~G  331 (524)
                      +.||++|++ |||+|+|+++ ++|++|++|||..+ |...++|||+|||||++.      ++++|||||||||++|||+|
T Consensus       127 ~~ik~al~~-GPV~v~i~~~~~~f~~Y~sGVy~~~-c~~~~~HaV~IVGyg~~~------~G~~YWivkNSWG~~WGe~G  198 (262)
T 2fo5_A          127 EDLARAVAN-QPVSVAVEASGKAFMFYSEGVFTGE-CGTELDHGVAVVGYGVAE------DGKAYWTVKNSWGPSWGEQG  198 (262)
T ss_dssp             HHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-CCCCCCEEEEEEEEEECT------TSCEEEEEECSBCTTSTBTT
T ss_pred             HHHHHHHHh-CCEEEEEecChHHHhccCCceECCC-CCCcCCEEEEEEEEcccC------CCceEEEEEeCCCCCCCCCe
Confidence            788888876 9999999998 79999999999875 445679999999999873      46899999999999999999


Q ss_pred             ccccccccCc--cCCcCcCCcCCC
Q psy1664         332 LFRIGCRPYE--IPCERYMNGSRS  353 (524)
Q Consensus       332 y~ri~~~~~~--~~c~~~~~~~~~  353 (524)
                      ||||+++..+  ..|++.+.+++|
T Consensus       199 Y~ri~r~~n~~~~~CgI~~~~~~p  222 (262)
T 2fo5_A          199 YIRVEKDSGASGGLCGIAMEASYP  222 (262)
T ss_dssp             EEEEESSCSCTTCGGGTTTSCEEE
T ss_pred             EEEEEcCCCCCCCccceeeeeeEE
Confidence            9999998653  469997766555

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=100.00  E-value=4.5e-53  Score=420.16  Aligned_cols=233  Identities=29%  Similarity=0.533  Sum_probs=183.8

Q ss_pred             CCCCCCccccccCCCCCCCCccCCCCC---CCccHHHHHHHHHHHHHHHHHcCCCc-cccCCHHHHHhhcCCCCCCCCCC
Q psy1664          94 LEELPEGFDARINWPYCPTIQEIRDQG---SCGSGWALGAVEAMSDRVCIASRGKR-HVRLSSDDLVSCCKDCGNGCQGG  169 (524)
Q Consensus        94 ~~~lP~s~DwR~~~~~~g~vtpvkdQg---~CGsCwAfA~~~~le~~~~i~~~~~~-~~~LS~q~lvdC~~~~~~gC~GG  169 (524)
                      ..+||++||||++. .+++|+||||||   .||||||||++++||++++|++++.. .+.||+|+|+||+..  .||+||
T Consensus        33 ~~~lP~~~DwR~~~-~~~~vtpVkdQg~~~~CGSCWAfa~~~alE~~~~i~~~g~~~~~~LS~Q~lvdC~~~--~gC~GG  109 (277)
T 1deu_A           33 PADLPKSWDWRNVD-GVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNA--GSCEGG  109 (277)
T ss_dssp             GGGSCSCEETTSBT-TBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSSS--EETBEE
T ss_pred             cccCCCceecccCC-CCCcCCccccCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCcccCHHHHHhCcCC--CCCCCC
Confidence            35799999999972 235799999999   99999999999999999999986542 479999999999753  799999


Q ss_pred             ChHHHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecC
Q psy1664         170 FHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP  249 (524)
Q Consensus       170 ~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (524)
                      ++..||+|++++|+++|+.|       ||...        ...|...    ..| ..                       
T Consensus       110 ~~~~a~~yi~~~Gi~~e~~y-------PY~~~--------~~~C~~~----~~~-~~-----------------------  146 (277)
T 1deu_A          110 NDLSVWDYAHQHGIPDETCN-------NYQAK--------DQECDKF----NQC-GT-----------------------  146 (277)
T ss_dssp             CHHHHHHHHHHTCBCBGGGS-------CCCSS--------CCCCCHH----HHS-EE-----------------------
T ss_pred             CHHHHHHHHHHcCCCcCccC-------CCcCC--------CCCcccc----ccc-cc-----------------------
Confidence            99999999999999998888       99865        3344210    000 00                       


Q ss_pred             CCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccc
Q psy1664         250 ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE  329 (524)
Q Consensus       250 ~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe  329 (524)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (277)
T 1deu_A          147 --------------------------------------------------------------------------------  146 (277)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCccccccccCccCCcCcCCcCCCCCCCCCCCCcccccccccCccccccCcceeeeEEEEcCCCHHHHHHHHHhCCCEEE
Q psy1664         330 NGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEG  409 (524)
Q Consensus       330 ~Gy~ri~~~~~~~~c~~~~~~~~~~C~~~~~~~p~C~~~C~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~gPv~~  409 (524)
                                               |.    +..    .|....  .+.  ......+..+ .++++||++|+++|||++
T Consensus       147 -------------------------~~----~~~----~c~~~~--~~~--~~~i~~y~~v-~~~~~i~~~i~~~GPV~v  188 (277)
T 1deu_A          147 -------------------------CN----EFK----ECHAIR--NYT--LWRVGDYGSL-SGREKMMAEIYANGPISC  188 (277)
T ss_dssp             -------------------------EE----ETT----EEEECS--SCC--CBCEEEEEEE-CSHHHHHHHHHHHCCEEE
T ss_pred             -------------------------cc----cCc----cccccc--Ccc--eEEeceeEec-CCHHHHHHHHHHcCCEEE
Confidence                                     00    000    000000  000  0111122233 368899999999999999


Q ss_pred             EEecccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCCCcEEEEEeCCC-------
Q psy1664         410 SMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQN-------  482 (524)
Q Consensus       410 ~~~~~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~g~~-------  482 (524)
                      +|+++++|++|++|||..+++...++|||+|||||+++       +++|||||||||++||++|||||+||.|       
T Consensus       189 ~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~iVGyg~~~-------g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~  261 (277)
T 1deu_A          189 GIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISD-------GTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGAR  261 (277)
T ss_dssp             EECCCHHHHTCCSSEECBCCSCCCCCEEEEEEEEEEET-------TEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGG
T ss_pred             EEecccccccCcCcEECCCCCCCcCCeEEEEEEecccC-------CccEEEEEeCCCCccCCCcEEEEEcCCCccccccc
Confidence            99998899999999998876666789999999999886       8899999999999999999999999998       


Q ss_pred             -ccCccccceecccee
Q psy1664         483 -ECGIEADITAGLPKI  497 (524)
Q Consensus       483 -~cgi~~~~~~~~p~~  497 (524)
                       .||||+++++++|.+
T Consensus       262 ~~cgIe~~~~~~~p~~  277 (277)
T 1deu_A          262 YNLAIEEHCTFGDPIV  277 (277)
T ss_dssp             TBTTTTSCEEEEEECC
T ss_pred             ccceeccccEeecccC
Confidence             999999999999974

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=100.00  E-value=3.3e-53  Score=410.32  Aligned_cols=212  Identities=29%  Similarity=0.579  Sum_probs=173.2

Q ss_pred             CCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHH
Q psy1664          96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAW  175 (524)
Q Consensus        96 ~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~  175 (524)
                      +||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+...+.||+||++..||
T Consensus         1 ~lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~~~~~gC~GG~~~~a~   74 (229)
T 1s4v_A            1 TVPASVDWRKK----GAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTN--KLVSLSEQELVDCDTDQNQGCNGGLMDYAF   74 (229)
T ss_dssp             CCCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCCSSCCTTBCBCHHHHH
T ss_pred             CCCCCEeCCCC----CCCCCCccCccchHHHHHHHHHHHHHHHHHHcC--CCCCcCHHHHHhhCCCCCCCCCCCCHHHHH
Confidence            48999999998    889999999999999999999999999999886  468999999999985456799999999999


Q ss_pred             HHHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCC-CHH
Q psy1664         176 KYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-NEE  253 (524)
Q Consensus       176 ~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  253 (524)
                      +|++++ |+++|++|       ||...        .+.|.......        ..     .....    ...++. +++
T Consensus        75 ~y~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~--------~~-----~~i~~----y~~v~~~~~~  122 (229)
T 1s4v_A           75 EFIKQRGGITTEANY-------PYEAY--------DGTCDVSKENA--------PA-----VSIDG----HENVPENDEN  122 (229)
T ss_dssp             HHHHHHTCBCBTTTS-------CCCSS--------CCCCCHHHHTC--------CC-----BCCCE----EEECCTTCHH
T ss_pred             HHHHHhCCccccccC-------CccCC--------CCCCCCCCCCC--------cE-----EEeee----EEEeCCccHH
Confidence            999998 99998888       99875        55665321000        00     01111    124443 577


Q ss_pred             HHHHHHHHcCCeEEEEEe-cccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCc
Q psy1664         254 TIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL  332 (524)
Q Consensus       254 ~ik~~l~~~GPV~v~i~v-~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy  332 (524)
                      .|+++|++ |||+|+|++ +++|++|++|||..+ |...++|||+|||||++.      ++++|||||||||++|||+||
T Consensus       123 ~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~-c~~~~~HaV~iVGyg~~~------~g~~yWivkNSWG~~WGe~Gy  194 (229)
T 1s4v_A          123 ALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS-CGTELDHGVAIVGYGTTI------DGTKYWTVKNSWGPEWGEKGY  194 (229)
T ss_dssp             HHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-CCCCCCEEEEEEEEEECT------TSCEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHhc-CCEEEEEEeCcHHHhhCCCcEECCC-CCCCCCeEEEEEEecccc------CCCCEEEEEeCCCCCccCCcE
Confidence            78888775 999999999 579999999999875 555679999999999873      368999999999999999999


Q ss_pred             cccccccC--ccCCcCcCCcCCC
Q psy1664         333 FRIGCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       333 ~ri~~~~~--~~~c~~~~~~~~~  353 (524)
                      |||+++..  ...|++...+++|
T Consensus       195 ~~i~r~~~~~~~~Cgi~~~~~~p  217 (229)
T 1s4v_A          195 IRMERGISDKEGLCGIAMEASYP  217 (229)
T ss_dssp             EEEECSCSSTTCGGGTTSSCEEE
T ss_pred             EEEEcCCCCCCCcCcccccceee
Confidence            99999853  2469987766655

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=100.00  E-value=1.6e-52  Score=400.88  Aligned_cols=205  Identities=30%  Similarity=0.513  Sum_probs=169.2

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..||+
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~CGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~   73 (212)
T 2cio_A            1 IPEYVDWRQK----GAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTG--NLNQYSEQELLDCDR-RSYGCNGGYPWSALQ   73 (212)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSCTTBCCCHHHHHH
T ss_pred             CCCcccCCCC----CCCCCCccCCccchHHHHHHHHHHHHHHHHhcC--CccccCHHHHHHhCC-CCCCCCCCCHHHHHH
Confidence            7999999998    899999999999999999999999999999875  469999999999975 467999999999999


Q ss_pred             HHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCC-CHHHH
Q psy1664         177 YWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-NEETI  255 (524)
Q Consensus       177 ~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i  255 (524)
                      |++++|+++|++|       ||...        .+.|+......        ..+     ....    ...++. ++++|
T Consensus        74 yi~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~--------~~~-----~i~~----~~~v~~~~~~~i  121 (212)
T 2cio_A           74 LVAQYGIHYRNTY-------PYEGV--------QRYCRSREKGP--------YAA-----KTDG----VRQVQPYNEGAL  121 (212)
T ss_dssp             HHHHTCBCBTTTS-------CCCSS--------CCCCCTTTTCS--------CSB-----CCSE----EEECCSSCHHHH
T ss_pred             HHHHhCcCccccc-------CCcCC--------CCCcCCCCCCC--------ceE-----EEee----EEEeCCccHHHH
Confidence            9999999998888       99875        56776532110        000     1111    124443 67888


Q ss_pred             HHHHHHcCCeEEEEEecc-cccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccc
Q psy1664         256 MREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR  334 (524)
Q Consensus       256 k~~l~~~GPV~v~i~v~~-~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~r  334 (524)
                      |++|++ |||+|+|+++. +|++|++|||..+ |...++|||+|||||+           +|||||||||++|||+||||
T Consensus       122 ~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~-~~~~~~HaV~iVGyg~-----------~yWivkNSWG~~WGe~Gy~~  188 (212)
T 2cio_A          122 LYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP-CGNKVDHAVAAVGYGP-----------NYILIKNSWGTGWGENGYIR  188 (212)
T ss_dssp             HHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-CCSCCCEEEEEEEEET-----------TEEEEECSBCTTSTBTTEEE
T ss_pred             HHHHHh-CCEEEEEeccCcchhhcCCceecCC-CCCCCCEEEEEEEecC-----------CeEEEEeCCCCCcccCcEEE
Confidence            888875 99999999985 8999999999875 4456899999999995           69999999999999999999


Q ss_pred             cccccC--ccCCcCcCCcCCC
Q psy1664         335 IGCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       335 i~~~~~--~~~c~~~~~~~~~  353 (524)
                      |+++..  ...|++...+++|
T Consensus       189 i~~~~~~~~~~Cgi~~~~~~p  209 (212)
T 2cio_A          189 IKRGTGNSYGVCGLYTSSFYP  209 (212)
T ss_dssp             EECSSSCTTCGGGTTSCCEEE
T ss_pred             EEcCCCCCCCccCcccceeEE
Confidence            999852  2368887665544

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=100.00  E-value=6.7e-53  Score=411.28  Aligned_cols=215  Identities=25%  Similarity=0.524  Sum_probs=173.3

Q ss_pred             CCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHH
Q psy1664          95 EELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA  174 (524)
Q Consensus        95 ~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a  174 (524)
                      .+||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+.. +.||+||++..|
T Consensus        16 ~~lP~~~DwR~~----~~vtpVkdQg~CGsCWAFaa~~alE~~~~i~~~--~~~~lSeq~l~dC~~~-~~gC~GG~~~~a   88 (241)
T 2oul_A           16 NFDHAAYDWRLH----SGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKN--KLITLSEQELVDCSFK-NYGCNGGLINNA   88 (241)
T ss_dssp             CCCSSCEEGGGT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHC--CCCCBCHHHHHHHCTT-SCTTBCBCHHHH
T ss_pred             ccCCCccccCcC----CCCCCCccCccchHHHHHHHHHHHHHHHHHhcC--CCcccCHHHHHhhcCC-CCCCCCCCHHHH
Confidence            479999999998    889999999999999999999999999999986  4689999999999753 679999999999


Q ss_pred             HHHHHH-hCCccCCccCCCCCccccccCcccccCCCCCC-CCCCCCCCccccccccCCCccccccccccceeeeecCC-C
Q psy1664         175 WKYWVT-TGIVSGGTYASKQGCRPYEIPCERYMNGSHSS-CQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-N  251 (524)
Q Consensus       175 ~~~~~~-~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~-C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  251 (524)
                      ++|+++ .|+++|++|       ||...        .+. |+.....         ..+     ....    ...++. +
T Consensus        89 ~~yi~~~~Gi~~e~~y-------PY~~~--------~~~~C~~~~~~---------~~~-----~i~~----~~~v~~~~  135 (241)
T 2oul_A           89 FEDMIELGGICPDGDY-------PYVSD--------APNLCNIDRCT---------EKY-----GIKN----YLSVPDNK  135 (241)
T ss_dssp             HHHHHHTTSBCBTTSS-------CCCTT--------SCCCCCTTSSS---------CCB-----CCSE----EEECCTTC
T ss_pred             HHHHHHhCCcCccccC-------CCcCC--------CCCcCCCCCCc---------cce-----eeee----EEEeCCCC
Confidence            999998 699999888       99875        455 7643211         111     1111    124544 6


Q ss_pred             HHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCC---CCCCccceeEEEEeCCCCCccc
Q psy1664         252 EETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPL---GEGTSSVVKYWLVANSFNTNWG  328 (524)
Q Consensus       252 ~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~---~~g~~~g~~YWivkNSWG~~WG  328 (524)
                      +++||++|   |||+|+|+++++|++|++|||.. .|...++|||+|||||++..   ...+..+++|||||||||++||
T Consensus       136 ~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~-~c~~~~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WG  211 (241)
T 2oul_A          136 LKEALRFL---GPISISVAVSDDFAFYKEGIFDG-ECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWG  211 (241)
T ss_dssp             HHHHHHHT---CCEEEEECBCHHHHTCCSSBCCS-CBCSSCCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTST
T ss_pred             HHHHHHhh---CCEEEEEecCcchhhcCCcEEcC-cCCCCCCEEEEEEEeccccccccccccCCCCCEEEEEeCCCCCcc
Confidence            88999999   99999999998999999999987 44445899999999998620   0011237899999999999999


Q ss_pred             ccCccccccccCc--cCCcCcCCcCCC
Q psy1664         329 ENGLFRIGCRPYE--IPCERYMNGSRS  353 (524)
Q Consensus       329 e~Gy~ri~~~~~~--~~c~~~~~~~~~  353 (524)
                      |+|||||+++...  ..|++.+.+++|
T Consensus       212 e~Gy~~i~~~~~~~~g~Cgi~~~~~~~  238 (241)
T 2oul_A          212 ERGFINIETDESGLMRKCGLGTDAFIP  238 (241)
T ss_dssp             BTTEEEEEECSSSCCCGGGTTSSEEEE
T ss_pred             cCCEEEEEcCCCCCCCcCCccceEEEE
Confidence            9999999998653  248887665443

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=100.00  E-value=7.7e-53  Score=411.34  Aligned_cols=215  Identities=24%  Similarity=0.514  Sum_probs=173.0

Q ss_pred             CCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHH
Q psy1664          95 EELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKA  174 (524)
Q Consensus        95 ~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a  174 (524)
                      .+||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+.. +.||+||++..|
T Consensus        18 ~~lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~alE~~~~i~~~--~~~~lSeq~lvdC~~~-~~gC~GG~~~~a   90 (243)
T 3bwk_A           18 KLDRIAYDWRLH----GGVTPVKDQALCGSCWAFSSVGSVESQYAIRKK--ALFLFSEQELVDCSVK-NNGCYGGYITNA   90 (243)
T ss_dssp             CCCCSCEEGGGT----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHC--SCCCBCHHHHHHHCTT-SCGGGCCCHHHH
T ss_pred             ccCCCceecCcC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHhcC--CCcccCHHHHHHhcCC-CCCCCCCCHHHH
Confidence            479999999998    889999999999999999999999999999986  4689999999999753 679999999999


Q ss_pred             HHHHHH-hCCccCCccCCCCCccccccCcccccCCCCCC-CCCCCCCCccccccccCCCccccccccccceeeeecCC-C
Q psy1664         175 WKYWVT-TGIVSGGTYASKQGCRPYEIPCERYMNGSHSS-CQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA-N  251 (524)
Q Consensus       175 ~~~~~~-~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~-C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  251 (524)
                      ++|+++ .|+++|++|       ||...        .+. |+....         ...+.     ...    ...++. +
T Consensus        91 ~~y~~~~~Gi~~e~~y-------PY~~~--------~~~~C~~~~~---------~~~~~-----i~~----~~~v~~~~  137 (243)
T 3bwk_A           91 FDDMIDLGGLCSQDDY-------PYVSN--------LPETCNLKRC---------NERYT-----IKS----YVSIPDDK  137 (243)
T ss_dssp             HHHHHHTTSBCBTTTS-------CCCTT--------SCCCCCGGGC---------SSCBC-----CCE----EEECCTTC
T ss_pred             HHHHHHhCCccccccc-------CCcCC--------CCCcCCCCCC---------cccee-----eee----EEEeCCCC
Confidence            999998 699999888       99875        444 653211         11111     111    124554 6


Q ss_pred             HHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCC---CCCCccceeEEEEeCCCCCccc
Q psy1664         252 EETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPL---GEGTSSVVKYWLVANSFNTNWG  328 (524)
Q Consensus       252 ~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~---~~g~~~g~~YWivkNSWG~~WG  328 (524)
                      +++||++|   |||+|+|+++++|+.|++|||.. .|...++|||+|||||++..   ...+..+++|||||||||++||
T Consensus       138 ~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~-~c~~~~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WG  213 (243)
T 3bwk_A          138 FKEALRYL---GPISISIAASDDFAFYRGGFYDG-ECGAAPNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWG  213 (243)
T ss_dssp             HHHHHHHT---CCEEEEECCCHHHHTCCSSSCCC-CCCSSCCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTST
T ss_pred             HHHHHHhh---CCEEEEEecChhHHhcCCceecC-CCCCcCCeEEEEEEecCccccccccccCCCCCEEEEEeCCCCCcC
Confidence            88999999   99999999998999999999988 45445899999999998620   0011237899999999999999


Q ss_pred             ccCccccccccCc--cCCcCcCCcCCC
Q psy1664         329 ENGLFRIGCRPYE--IPCERYMNGSRS  353 (524)
Q Consensus       329 e~Gy~ri~~~~~~--~~c~~~~~~~~~  353 (524)
                      |+|||||+++...  ..|++.+.+.+|
T Consensus       214 e~Gy~~i~~~~~~~~g~Cgi~~~~~~~  240 (243)
T 3bwk_A          214 EGGYINLETDENGYKKTCSIGTEAYVP  240 (243)
T ss_dssp             BTTEEEEEECSSSCCCSTTTTSSEEEE
T ss_pred             CCcEEEEEcCCCCCCCcCCccceEEEE
Confidence            9999999998653  348887655443

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=100.00  E-value=3.3e-52  Score=397.45  Aligned_cols=202  Identities=28%  Similarity=0.512  Sum_probs=168.0

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..|++
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~   73 (208)
T 1o0e_A            1 LPEQIDWRKK----GAVTPVKNQGSCGSCWAFSTVSTVESINQIRTG--NLISLSEQELVDCDK-KNHGCLGGAFVFAYQ   73 (208)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSCTTBCCCHHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCCCCccHHHHHHHHHHHHHHHHhcC--CceecCHHHhhhhcC-CCCCCCCCCHHHHHH
Confidence            7999999998    899999999999999999999999999999875  479999999999974 467999999999999


Q ss_pred             HHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecC-CCHHH
Q psy1664         177 YWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANEET  254 (524)
Q Consensus       177 ~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  254 (524)
                      |++++ |+++|++|       ||...        .+.|+..  .         +.+     ....|    ..++ .++++
T Consensus        74 y~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~--~---------~~~-----~i~~~----~~v~~~~~~~  118 (208)
T 1o0e_A           74 YIINNGGIDTQANY-------PYKAV--------QGPCQAA--S---------KVV-----SIDGY----NGVPFCNEXA  118 (208)
T ss_dssp             HHHHHTCBCBTTTS-------CCCSS--------CCCCCCC--C---------CCB-----CCCEE----EECCTTCHHH
T ss_pred             HHHHhCCcCccccc-------CccCC--------CCcCCCC--C---------ceE-----EeCeE----EEeCCCCHHH
Confidence            99998 99999888       99875        5667541  0         000     11111    2344 36788


Q ss_pred             HHHHHHHcCCeEEEEEecc-cccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcc
Q psy1664         255 IMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF  333 (524)
Q Consensus       255 ik~~l~~~GPV~v~i~v~~-~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~  333 (524)
                      ||++|++ |||+|+|+++. +|++|++|||+.+ |...++|||+|||||+           +|||||||||++|||+|||
T Consensus       119 i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~-c~~~~~HaV~iVGyg~-----------~yWivkNSWG~~WGe~Gy~  185 (208)
T 1o0e_A          119 LKQAVAV-QPSTVAIDASSAQFQQYSSGIFSGP-CGTKLNHGVTIVGYQA-----------NYWIVRNSWGRYWGEKGYI  185 (208)
T ss_dssp             HHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-CCSCCCEEEEEEEECS-----------SEEEEECSBCTTSTBTTEE
T ss_pred             HHHHHHh-CCEEEEEEccCcccccccCceECCC-CCCcCCEEEEEEEeCC-----------CeEEEEcCCCCcccCCcEE
Confidence            8888876 99999999985 8999999999875 4556899999999995           6999999999999999999


Q ss_pred             ccccccCccCCcCcCCcCCC
Q psy1664         334 RIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       334 ri~~~~~~~~c~~~~~~~~~  353 (524)
                      ||+++.....|++...+++|
T Consensus       186 ~i~~~~~~~~Cgi~~~~~~p  205 (208)
T 1o0e_A          186 RMLRVGGCGLCGIARLPYYP  205 (208)
T ss_dssp             EEECCSTTCGGGTTSSCEEE
T ss_pred             EEEcCCCCCcCCCcccceee
Confidence            99997522368887666544

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=100.00  E-value=2.9e-52  Score=399.59  Aligned_cols=205  Identities=28%  Similarity=0.575  Sum_probs=170.4

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..||+
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~   73 (214)
T 2bdz_A            1 YPESIDWREK----GAVTPVKNQNPCGSCWAFSTVATIEGINKIITG--QLISLSEQELLDCER-RSHGCDGGYQTTSLQ   73 (214)
T ss_dssp             CCSCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHS--CBCCBCHHHHHHHCT-TSCTTBCCCHHHHHH
T ss_pred             CCCcEeCCCC----CCCCCCccCCCCccHHHHHhHHHHHHHHHHhcC--CccccCHHHHHhhcC-CCCCCCCCCHHHHHH
Confidence            7999999998    899999999999999999999999999999986  468999999999975 467999999999999


Q ss_pred             HHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecC-CCHHHH
Q psy1664         177 YWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-ANEETI  255 (524)
Q Consensus       177 ~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i  255 (524)
                      |++++|+++|++|       ||...        .+.|+........             .....|    ..++ .++++|
T Consensus        74 y~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~~~-------------~~i~~y----~~v~~~~~~~i  121 (214)
T 2bdz_A           74 YVVDNGVHTEREY-------PYEKK--------QGRCRAKDKKGPK-------------VYITGY----KYVPANDEISL  121 (214)
T ss_dssp             HHHHHCEEBTTTS-------CCCSS--------CCCCCTTTCCSCE-------------ECCCEE----EEECSSBHHHH
T ss_pred             HHHHhCCCccccC-------CCCCC--------CCCCCCCCCCCce-------------eeecCE----EEeCCCcHHHH
Confidence            9999999999888       99876        5667654221100             011111    2344 468899


Q ss_pred             HHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccc
Q psy1664         256 MREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR  334 (524)
Q Consensus       256 k~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~r  334 (524)
                      |++|++ |||+|+|+++ ++|++|++|||..+ |...++|||+|||||+           +|||||||||++|||+||||
T Consensus       122 ~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~~~-~~~~~~HaV~iVGyg~-----------~yWivkNSWG~~WGe~Gy~~  188 (214)
T 2bdz_A          122 IQAIAN-QPVSVVTDSRGRGFQFYKGGIYEGP-CGTNTDHAVTAVGYGK-----------TYLLLKNSWGPNWGEKGYIR  188 (214)
T ss_dssp             HHHHHH-SCEEEEECCCSHHHHTCCSSEECCS-CCSCCCEEEEEEEECS-----------SEEEEECSBCTTSTBTTEEE
T ss_pred             HHHHHh-CCEEEEEeeChhHhhcccCceecCC-CCCCCCeEEEEEEcCC-----------CeEEEEeCCCCCcccCCEEE
Confidence            999986 9999999998 79999999999875 4556899999999995           69999999999999999999


Q ss_pred             cccccC--ccCCcCcCCcCCC
Q psy1664         335 IGCRPY--EIPCERYMNGSRS  353 (524)
Q Consensus       335 i~~~~~--~~~c~~~~~~~~~  353 (524)
                      |+++..  ...|++...+++|
T Consensus       189 i~~~~~~~~~~Cgi~~~~~~p  209 (214)
T 2bdz_A          189 IKRASGRSKGTCGVYTSSFFP  209 (214)
T ss_dssp             EECCCSBSSCGGGTTSCEEEE
T ss_pred             EEcCCCCCCCcccccccceEE
Confidence            999753  2468887665554

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=100.00  E-value=1.5e-52  Score=405.05  Aligned_cols=213  Identities=26%  Similarity=0.564  Sum_probs=175.5

Q ss_pred             CCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCC-CCCCCCCChHH
Q psy1664          95 EELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC-GNGCQGGFHGK  173 (524)
Q Consensus        95 ~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~-~~gC~GG~~~~  173 (524)
                      .+||++||||++    ++|+||||||.||||||||++++||++++++++  ..+.||+|+|++|+... +.||+||++..
T Consensus         5 ~~lP~~~Dwr~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~~~gC~GG~~~~   78 (224)
T 3f75_A            5 SELPAGVDWRSR----GCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTG--KLVSLSEQELMDCSRAEGNQSCSGGEMND   78 (224)
T ss_dssp             GGSCSCEEHHHH----TCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCGGGTCCGGGCBCHHH
T ss_pred             cCCCCceecccC----CCCCCCccCCCCccHHHHHHHHHHHHHHHHhcC--CCceeCHHHHhhcccCCCCCCCCCCCHHH
Confidence            479999999998    889999999999999999999999999999986  46999999999997643 57999999999


Q ss_pred             HHHHHHH-hCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecC-CC
Q psy1664         174 AWKYWVT-TGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLP-AN  251 (524)
Q Consensus       174 a~~~~~~-~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  251 (524)
                      |++|+++ .|+++|++|       ||...        .+.|+.......         .     ....|    ..++ .+
T Consensus        79 a~~~~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~~---------~-----~i~~~----~~~~~~~  125 (224)
T 3f75_A           79 AFQYVLDSGGICSEDAY-------PYLAR--------DEECRAQSCEKV---------V-----KILGF----KDVPRRS  125 (224)
T ss_dssp             HHHHHHHHTCBCBTTTS-------CCCSS--------CCCCCGGGSCCC---------B-----CCSEE----EECCSSC
T ss_pred             HHHHHHHhCCccccccC-------CCcCC--------CCCCCcCCCCce---------E-----EeccE----EEeCCCh
Confidence            9999998 699999888       99876        556754321110         0     01111    2343 46


Q ss_pred             HHHHHHHHHHcCCeEEEEEecc-cccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCccccc
Q psy1664         252 EETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGEN  330 (524)
Q Consensus       252 ~~~ik~~l~~~GPV~v~i~v~~-~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~  330 (524)
                      +++||++|. +|||+|+|+++. +|++|++|||+ +.|...++|||+|||||++.     .++++|||||||||++|||+
T Consensus       126 ~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~-~~~~~~~~Hav~iVGyg~~~-----~~g~~ywivkNSWG~~WG~~  198 (224)
T 3f75_A          126 EAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFD-ASCGTDLDHGVLLVGYGTDK-----ESKKDFWIMKNSWGTGWGRD  198 (224)
T ss_dssp             HHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEEC-CCCCCCCCEEEEEEEEEEET-----TTTEEEEEEECSBCTTSTBT
T ss_pred             HHHHHHHHc-CCCEEEEEeccchhhhcCccceEC-CCCCCccCeEEEEEEEeccc-----CCCCCEEEEECCcCcchhhC
Confidence            888999988 999999999985 89999999998 56677889999999999863     14689999999999999999


Q ss_pred             CccccccccC-ccCCcCcCCcCCC
Q psy1664         331 GLFRIGCRPY-EIPCERYMNGSRS  353 (524)
Q Consensus       331 Gy~ri~~~~~-~~~c~~~~~~~~~  353 (524)
                      |||||+++.. ...|++.+.+++|
T Consensus       199 Gy~~i~~~~~~~~~cgi~~~~~~p  222 (224)
T 3f75_A          199 GYMYMAMHKGEEGQCGLLLDASFP  222 (224)
T ss_dssp             TEEEEESCSCTTCGGGTTSSCEEE
T ss_pred             CEEEEEcCCCCCCcCcccCceeee
Confidence            9999999761 1369987766554

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=100.00  E-value=3.9e-48  Score=387.96  Aligned_cols=250  Identities=14%  Similarity=0.120  Sum_probs=175.6

Q ss_pred             cccccccccccchHHHHHHHhCCCCCCCCCCCCCCcccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHH
Q psy1664          51 FYGAEKNALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGA  130 (524)
Q Consensus        51 ~~~~g~N~fsd~t~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~  130 (524)
                      ...-..|++.++..|.|+..+|..++....+  ............+||++||||++    +   ||||||.||||||||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~lG~~p~~~d~r--d~~~~~~~~~~~~lP~s~DwR~~----~---pVkdQG~CGSCWAFAa   83 (291)
T 3ois_A           13 GLVPRGSHMQTVLKRRKKSGYGYIPDIADIR--DFSYTPEKSVIAALPPKVDLTPP----F---QVYDQGRIGSCTANAL   83 (291)
T ss_dssp             ----------CCCCCCCCTTCCEECCCCCTT--CCBCCCCHHHHHTCCSEEECCCS----S---CCCBCTTSSCHHHHHH
T ss_pred             CcccchhhHhHhhhccccccCCCCCCCCccc--ccccCCCccccccCCcceecccC----C---CcccCCCCccHHHHHH
Confidence            3445567888888888988888765542111  11100000012479999999998    3   9999999999999999


Q ss_pred             HHHHHHHHHHHcCCCccccCCHHHHH--hhcCC--C-CCCCCCCChHHHHHHHHHhCCccCCccCCCCCccccccCcccc
Q psy1664         131 VEAMSDRVCIASRGKRHVRLSSDDLV--SCCKD--C-GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERY  205 (524)
Q Consensus       131 ~~~le~~~~i~~~~~~~~~LS~q~lv--dC~~~--~-~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~  205 (524)
                      +++||+++++. +  ..+.||+|+|+  +|...  . ..+|.||++..||+|++++||++|++|       ||....   
T Consensus        84 ~~alE~~~~~~-g--~~~~lS~q~l~~~~c~~~~~~~~~~c~GG~~~~A~~yi~~~Gi~~e~~y-------PY~~~~---  150 (291)
T 3ois_A           84 AAAIQFERIHD-K--QSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEW-------PYGDTP---  150 (291)
T ss_dssp             HHHHHHHHHHT-T--CSSCCCBCHHHHHHHHHHHSSCTTSCCCEEHHHHHHHHHHTCCCBGGGS-------CCCCCC---
T ss_pred             HHHHHHHHHHh-C--CCCCcCcCHHHHHhhhhhhhcCCCCCCCcCHHHHHHHHHHhCCCCHhhC-------CCCCCc---
Confidence            99999998753 3  35789999998  67632  2 236889999999999999999999999       998651   


Q ss_pred             cCCCCCCCCCCCCCCc--cccccccCCCccccccccccc-eeeeecCCCHHHHHHHHHHcCCeEEEEEecccccccCC--
Q psy1664         206 MNGSHSSCQDNEPNTP--ECIRKCQPGYDVSYEDDLNFG-RIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT--  280 (524)
Q Consensus       206 ~~~~~~~C~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~s--  280 (524)
                        ...+.|........  .+...|...       ...+. ...+.++.++++||++|+++|||+|+|.++++|+.|++  
T Consensus       151 --~~~~~C~~~~~~~~~~~p~~~C~~~-------~~~~~i~~y~~v~~~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~  221 (291)
T 3ois_A          151 --ADPRTEEFPPGAPASKKPSDQCYKD-------AQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLP  221 (291)
T ss_dssp             --CCTTTCSCCTTCGGGSCCCHHHHHH-------HGGGCCCEEEECCSCHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCC
T ss_pred             --cccccccccccccccCCCCHHHHhh-------cccceeccEEEcCcCHHHHHHHHHcCCCEEEEEEeccchhhcCCCC
Confidence              11245654211000  001112110       01111 12345667899999999999999999999999999998  


Q ss_pred             ceEEcCCCCC--CCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccccccccC
Q psy1664         281 GIYKHVAGGP--LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPY  340 (524)
Q Consensus       281 GIy~~~~~~~--~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~~~~  340 (524)
                      |||..+.|..  .++|||+|||||+         +++|||||||||++|||+|||||+++-.
T Consensus       222 Gi~~~~~~~~~~~~~Hav~iVGy~~---------~~~ywivkNSWG~~WG~~Gy~~i~~~~~  274 (291)
T 3ois_A          222 VRIPLPTKNDTLEGGHAVLCVGYDD---------EIRHFRIRNSWGNNVGEDGYFWMPYEYI  274 (291)
T ss_dssp             SBCCCCCTTSCEEEEEEEEEEEEET---------TTTEEEEECSBCTTSTBTTEEEEEHHHH
T ss_pred             eEEeCCCCCCCCcCCeEEEEEEEeC---------CCCEEEEEeCCCCCCCCCcEEEEEHHHh
Confidence            9999887643  3699999999984         3689999999999999999999998643

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=100.00  E-value=8.5e-47  Score=373.93  Aligned_cols=229  Identities=19%  Similarity=0.367  Sum_probs=154.1

Q ss_pred             CccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCC-CCCCCCCCC-hHHHHH
Q psy1664          99 EGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CGNGCQGGF-HGKAWK  176 (524)
Q Consensus        99 ~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~-~~~gC~GG~-~~~a~~  176 (524)
                      .-.|||++ ++|-.++||||||.||||||||++++||++++|+++  .++.||+|+|+||+.. .+.||+||. +..+++
T Consensus         9 ~~~dWR~~-~~~~~it~VkdQg~CGSCWAFaa~~alE~~~~i~~~--~~~~LS~Q~lvdC~~~~~~~GC~GG~~~~~~~~   85 (265)
T 2wbf_X            9 YCNRLKDE-NNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGY--EPTKISALYVANCYKGEHKDRCDEGSSPMEFLQ   85 (265)
T ss_dssp             CBCGGGCT-TSTGGGSCCCBCTTSSCHHHHHHHHHHHHHHHHTTC--CCCCBCHHHHHHCCSSSCCCTTTCCCCHHHHHH
T ss_pred             HHHhhccC-CCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHhcC--CCCCcCHHHHHHhhcccCCCCCCCCCCHHHHHH
Confidence            45799986 444334599999999999999999999999999764  4699999999999864 357999996 555678


Q ss_pred             HHHHhC-CccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccc---cccccCCCccccccccccceeee-ecCCC
Q psy1664         177 YWVTTG-IVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPEC---IRKCQPGYDVSYEDDLNFGRIAY-SLPAN  251 (524)
Q Consensus       177 ~~~~~G-i~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  251 (524)
                      |++++| +++|+.|       ||...      ...+.|+........+   ...+.............|..... ....+
T Consensus        86 ~i~~~Ggi~~e~~y-------PY~~~------~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~  152 (265)
T 2wbf_X           86 IIEDYGFLPAESNY-------PYNYV------KVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDN  152 (265)
T ss_dssp             HHHHHCCCCBTTTS-------CCCGG------GTTSCCCCCCTTCCCTTTTCEECCCCCSSSTTCCSSEEEEEGGGGTTC
T ss_pred             HHHHcCCCCCcccc-------CCcCC------CCCCCCCCccccccccccccccccccCCCceeecCCceEeeccccccc
Confidence            888887 8887777       99763      1135676433210000   00000000000011122211100 00013


Q ss_pred             ----HHHHHHHHHHcCCeEEEEEecccccccC-CceEEcCCCC-CCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCC
Q psy1664         252 ----EETIMREIFRHGPVEGSMTIYADMILYK-TGIYKHVAGG-PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT  325 (524)
Q Consensus       252 ----~~~ik~~l~~~GPV~v~i~v~~~f~~Y~-sGIy~~~~~~-~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~  325 (524)
                          +++||++|+++|||+|+|.+. +|+.|+ +|++....|. ..++|||+|||||++...+|  .+++|||||||||+
T Consensus       153 ~~~~~~~ik~~i~~~GPV~v~i~~~-~f~~y~~~g~~~~~~c~~~~~~HaV~iVGyG~~~~~~g--~~~~YWivkNSWG~  229 (265)
T 2wbf_X          153 MDAFVKIIKTEVMNKGSVIAYIKAE-NVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEG--EKKSYWIVRNSWGP  229 (265)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEECGG-GGCSGGGGSSSEECCCCCSCCCEEEEEEEEEEEECTTS--CEEEEEEEECSBCT
T ss_pred             hhhHHHHHHHHHHhcCCEEEEEEcc-cccccccCCcEEcCCCCCCcCCEEEEEEEEeCCcccCC--CcCCEEEEEcCCCC
Confidence                478999999999999999985 687775 5544333344 46899999999998511011  23699999999999


Q ss_pred             cccccCccccccccCccCCcCc
Q psy1664         326 NWGENGLFRIGCRPYEIPCERY  347 (524)
Q Consensus       326 ~WGe~Gy~ri~~~~~~~~c~~~  347 (524)
                      +|||+|||||+++.. ..|++.
T Consensus       230 ~WGe~GY~ri~~~g~-n~Cgi~  250 (265)
T 2wbf_X          230 YWGDEGYFKVDMYGP-THCHFN  250 (265)
T ss_dssp             TSTBTTEEEEESSCC-TTCSSC
T ss_pred             ccCCCCEEEEEecCC-CccCcc
Confidence            999999999987532 258754

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=100.00  E-value=1.4e-36  Score=315.31  Aligned_cols=223  Identities=17%  Similarity=0.225  Sum_probs=153.4

Q ss_pred             CCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCH----------------HHHHhhc
Q psy1664          96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSS----------------DDLVSCC  159 (524)
Q Consensus        96 ~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~----------------q~lvdC~  159 (524)
                      ..|..|+++..    ..++||+||++||+|||||++++||+.++++.++ ..+.||+                |+|+||+
T Consensus        47 ~~~~~F~~~~~----~~~tpVknQg~cGsCWaFs~~~~le~~~~~k~~~-~~~~lSe~yl~fwDKlEkan~flq~lidc~  121 (453)
T 2cb5_A           47 RAQHVFQHAVP----QEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNI-EEFEFSQSYLFFWDKVERCYFFLSAFVDTA  121 (453)
T ss_dssp             HCCCCCSEECS----CCCSSCCBCCBSSCHHHHHHHHHHHHHHHHHTTC-SCCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceeeeec----cCCCCcccCCCccchHhhhhHHHHHHHHHHHhcC-CeEeeChHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45778888877    5689999999999999999999999999998544 4699999                9999997


Q ss_pred             CC-------------CCCCCCCCChHHHHHHHHHhCCccCCccCCCCCccccccCcccc--c------------------
Q psy1664         160 KD-------------CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERY--M------------------  206 (524)
Q Consensus       160 ~~-------------~~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~--~------------------  206 (524)
                      ..             .+.||+||....|++++++.|+++++.|       ||+....+.  +                  
T Consensus       122 ~~~~~~d~R~v~~l~~~~gcdGG~~~~a~~~i~kyGl~p~~~y-------P~~~~s~ns~~mn~~L~~kLr~~a~~LR~~  194 (453)
T 2cb5_A          122 QRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCF-------PESYTTEATRRMNDILNHKMREFCIRLRNL  194 (453)
T ss_dssp             HTTCCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGS-------CCCTGGGBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCcchhhHHHhcCCCCCCCCChHHHHHHHHHcCccchhhc-------cccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            54             2569999999999999999999999999       887631000  0                  


Q ss_pred             --CCCCC---C----------------CCCCCCC-------------------Cc-----ccccc--ccCCCccccccc-
Q psy1664         207 --NGSHS---S----------------CQDNEPN-------------------TP-----ECIRK--CQPGYDVSYEDD-  238 (524)
Q Consensus       207 --~~~~~---~----------------C~~~~~~-------------------~~-----~~~~~--~~~~~~~~~~~~-  238 (524)
                        .+...   .                |.-.++.                   +|     .....  -...+. ..... 
T Consensus       195 ~~~g~~~~~l~~~k~~~l~~iy~il~~clG~pP~~F~~~~~dkd~~~~~~~~~TP~~F~~~~~~~~~~~~~yv-~l~n~p  273 (453)
T 2cb5_A          195 VHSGATKGEISATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDKNYEKIGPITPLEFYREHVKPLFNMEDKI-CLVNDP  273 (453)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSEEEEEECTTSCEEEEEEECHHHHHHHHTTTTSCGGGEE-EEECCC
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHHHHHcCCCCceeeEEEEccCCcccccCCCCHHHHHHHhcCCcCCCCCeE-EEecCC
Confidence              00000   0                2100000                   00     00000  000000 00000 


Q ss_pred             ---cccce----------------eeeecCCCH--HHHHHHHHHcCCeEEEEEecccccccCCceEEcCCC---------
Q psy1664         239 ---LNFGR----------------IAYSLPANE--ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAG---------  288 (524)
Q Consensus       239 ---~~~~~----------------~~~~~~~~~--~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~---------  288 (524)
                         ..|.+                ..++++.++  +.++.+|.++|||+++++|.. +.++++|||+..+|         
T Consensus       274 ~~~~py~~~y~v~~~~Nv~~g~~~~y~Nvp~~~l~~~~~~al~~g~PV~~~~Dv~~-~~~~k~GI~~~~~~~~~~~fg~~  352 (453)
T 2cb5_A          274 RPQHKHNKLYTVEYLSNMVGGRKTLYNNQPIDFLKKMVAASIKDGEAVWFGCDVGK-HFNSKLGLSDMNLYDHELVFGVS  352 (453)
T ss_dssp             CTTSCSSEEEEETTCCSSTTCCCCCEEECCHHHHHHHHHHHHHTTCCEEEEECTTT-TEETTTTEECTTSBCHHHHHSCC
T ss_pred             CCcCcccceeEEeecCcccccccccccccCHHHHHHHHHHHHHcCCCEEEEEEeCh-hhccCCcEEcCccccchhhcCcc
Confidence               00000                023444332  455678889999999999975 44559999987665         


Q ss_pred             -------------CCCCCcEEEEEEec--cCCCCCCCccce-eEEEEeCCCCCcccccCccccccc
Q psy1664         289 -------------GPLGEHAIRIIGWG--QEPLGEGTSSVV-KYWLVANSFNTNWGENGLFRIGCR  338 (524)
Q Consensus       289 -------------~~~~~HaV~iVGyg--~~~~~~g~~~g~-~YWivkNSWG~~WGe~Gy~ri~~~  338 (524)
                                   ....+|||+|||||  .+.      +|+ +|||||||||++||++|||+|++.
T Consensus       353 ~~~m~KaeRl~~~~s~~~HAmlivGyg~~~d~------~G~~~yWiVkNSWG~~wG~~GY~~ms~~  412 (453)
T 2cb5_A          353 LKNMNKAERLTFGESLMTHAMTFTAVSEKDDQ------DGAFTKWRVENSWGEDHGHKGYLCMTDE  412 (453)
T ss_dssp             SCSSCHHHHHHTTSCCCCEEEEEEEEEECTTS------CSCEEEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             ccccCHHHHhhccCCCCCeEEEEEEecccccc------CCCccEEEEEcCcCCCcCcCceEEechh
Confidence                         34579999999999  652      356 999999999999999999999864

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=100.00  E-value=5.7e-36  Score=311.18  Aligned_cols=224  Identities=16%  Similarity=0.166  Sum_probs=143.4

Q ss_pred             CCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCH----------------HHHHhhc
Q psy1664          96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSS----------------DDLVSCC  159 (524)
Q Consensus        96 ~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~----------------q~lvdC~  159 (524)
                      ..|..|+++..    ..++||||||+||+|||||++++||+.++++.++ ..+.||+                |+|+||+
T Consensus        52 ~~~~~F~~~~~----~~vtpVknQg~cGsCWaFs~~~~lE~~~~~~~~~-~~~~LSe~yl~~~dklEkan~flq~lvdc~  126 (457)
T 2e01_A           52 QDNRVFNTVVS----TDSTPVTNQKSSGRCWLFAATNQLRLNVLSELNL-KEFELSQAYLFFYDKLEKANYFLDQIVSSA  126 (457)
T ss_dssp             HCCCCCSEECC----------------CCHHHHHHHHHHHHHHHHHTTC-SSCCBCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCceEEEec----CCccCcccCCCCccchhHHhHHHHHHHHHHHhCC-CceeeCChhhhhhhHHHHHHHHHHHHHHhc
Confidence            36677888876    5689999999999999999999999999998434 4699999                7889997


Q ss_pred             CC-----------CCCCCCCCChHHHHHHHHHhCCccCCccCCCCCcccc-ccCccc--ccC------------------
Q psy1664         160 KD-----------CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPY-EIPCER--YMN------------------  207 (524)
Q Consensus       160 ~~-----------~~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY-~~~~~~--~~~------------------  207 (524)
                      ..           .+.||+||....|++++++.|+++++.|       || +....+  ..+                  
T Consensus       127 ~~~~~~r~v~~l~~~~gcdGG~~~~a~~~i~kyGivpe~~y-------P~~s~~s~ns~~~n~~L~~kLr~~a~~lR~~~  199 (457)
T 2e01_A          127 DQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDLY-------GDLPYSTTASRKWNSLLTTKLREFAETLRTAL  199 (457)
T ss_dssp             TSCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGS-------CSCSHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccchhhhhhccCCCCCCCCHHHHHHHHHHcCccchhhc-------CCcccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            52           3579999999999999999999999988       88 321000  000                  


Q ss_pred             --C------------------------CCCCCCCC---C---------------CCCccc-c-ccc--c-CCC-------
Q psy1664         208 --G------------------------SHSSCQDN---E---------------PNTPEC-I-RKC--Q-PGY-------  231 (524)
Q Consensus       208 --~------------------------~~~~C~~~---~---------------~~~~~~-~-~~~--~-~~~-------  231 (524)
                        +                        .-+.|+..   .               ..+|.- . ..+  . ..|       
T Consensus       200 ~~~~~~~~~l~~~~~~~l~~iy~il~~~LG~pP~~~~~~F~~~~~dkd~~~~~~~~TP~~F~~~~v~~~~~dyV~l~n~p  279 (457)
T 2e01_A          200 KERSADDSIIVTLREQMQREIFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDP  279 (457)
T ss_dssp             HHSCTTSHHHHHHHHHHHHHHHHHHHHHSCCCSSCTTSCEEEEEECTTSCEEEEEECHHHHHHHTTCCCTTSEEEEECCT
T ss_pred             hccCchhhhHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEEEEcCCCCccCCCcChHHHHHHHcCCCchheEEEeecC
Confidence              0                        00112110   0               001100 0 000  0 000       


Q ss_pred             --------ccccccccccce--eeeecCCCH--HHHHHHHHHcCCeEEEEEecccccccCCceEEcCC------------
Q psy1664         232 --------DVSYEDDLNFGR--IAYSLPANE--ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA------------  287 (524)
Q Consensus       232 --------~~~~~~~~~~~~--~~~~~~~~~--~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~------------  287 (524)
                              .+.+.....-+.  ..+++|.++  +.++.+|.++|||+++++|.. |++|++|||+..+            
T Consensus       280 ~~py~~~y~ve~~~N~~~g~~~~y~Nvp~d~l~~~~~~aL~~g~PV~~~~Dv~~-~~~~~~GI~~~~~~~~~~fg~~~~m  358 (457)
T 2e01_A          280 RHPYGKLIKIDRLGNVLGGDAVIYLNVDNETLSKLVVKRLQNNKAVFFGSHTPK-FMDKKTGVMDIELWNYPAIGYNLPQ  358 (457)
T ss_dssp             TSCTTCEEEETTCCSSTTCCCEEEEECCHHHHHHHHHHHHHTTCCEEEEECTTT-TEETTTTEECTTSBCGGGGTCCCCC
T ss_pred             CCccCeeEEEeccCCeecCCceeEEEcCHHHHHHHHHHHHHhCCCEEEEEEcCH-hHcccCceecccccchhhcCccccc
Confidence                    000000000000  134555443  456677889999999999975 8888999997654            


Q ss_pred             --------CCCCCCcEEEEEEeccCCCCCCCccce--eEEEEeCCCCCcccccCccccccc
Q psy1664         288 --------GGPLGEHAIRIIGWGQEPLGEGTSSVV--KYWLVANSFNTNWGENGLFRIGCR  338 (524)
Q Consensus       288 --------~~~~~~HaV~iVGyg~~~~~~g~~~g~--~YWivkNSWG~~WGe~Gy~ri~~~  338 (524)
                              +....+|||+|||||.+.      +|+  +|||||||||++||++|||+|++.
T Consensus       359 ~KaeRl~~~~s~~~HAmlivGyg~d~------~G~~p~yW~VkNSWG~~wG~~GY~~ms~~  413 (457)
T 2e01_A          359 QKASRIRYHESLMTAAMLITGCHVDE------TSKLPLRYRVENSWGKDSGKDGLYVMTQK  413 (457)
T ss_dssp             CHHHHHHTTSCCCCEEEEEEEEEECT------TTCCEEEEEEECSSCTTSTBTTEEEEEHH
T ss_pred             CHHHhhccCCCCCCeEEEEEEEEecc------CCCccCEEEEEeCccCCcCCCceEEeehh
Confidence                    245689999999999863      456  899999999999999999999864

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.97  E-value=8.2e-32  Score=274.11  Aligned_cols=76  Identities=18%  Similarity=0.134  Sum_probs=68.8

Q ss_pred             CccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCC-----------CCCCCCCCChHHHHHHHHHh
Q psy1664         113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-----------CGNGCQGGFHGKAWKYWVTT  181 (524)
Q Consensus       113 vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~-----------~~~gC~GG~~~~a~~~~~~~  181 (524)
                      ++||||||+||+|||||++++||+.++++++  ..+.||+|+|++|+..           ...||+||....|++|++++
T Consensus        22 vtpVknQg~cGsCWaFSa~~~lE~~~~~k~~--~~~~LSeq~Lvdcd~~ekan~~l~~~g~~~gcdGG~~~~a~~~i~k~   99 (383)
T 3pw3_A           22 ITSVKNQNRAGTCWCYSSYSFLESELLRMGK--GEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETF   99 (383)
T ss_dssp             CCCCCBCCBSSCHHHHHHHHHHHHHHHHTTC--CCCCBCHHHHHHHHHHHHHHHHHHTTTCSCCCSCCCHHHHHHHHHHT
T ss_pred             CCCcccCCCCcHHHHHHhHHHHHHHHHHHcC--CCCccChHHHHhhchhhhhhhhhhhccCCCCCCCCCHHHHHHHHHHc
Confidence            7999999999999999999999999999864  5799999999999641           13699999999999999999


Q ss_pred             CCccCCccC
Q psy1664         182 GIVSGGTYA  190 (524)
Q Consensus       182 Gi~~e~~y~  190 (524)
                      ||++++.||
T Consensus       100 Givpe~~YP  108 (383)
T 3pw3_A          100 GLVPEEEMR  108 (383)
T ss_dssp             CCCBGGGSC
T ss_pred             CcCcHHhCC
Confidence            999999993

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=99.95  E-value=1.5e-28  Score=248.15  Aligned_cols=131  Identities=45%  Similarity=0.981  Sum_probs=108.9

Q ss_pred             CCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCC
Q psy1664         210 HSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG  289 (524)
Q Consensus       210 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~  289 (524)
                      .+.|... ..++.|...|...+.+.+.....|....+.++.++++||++|+++|||+|+|+++++|++|++|||.++++.
T Consensus       179 ~~~C~~~-~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~~~~  257 (317)
T 3pbh_A          179 RPPCTGE-GDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGE  257 (317)
T ss_dssp             CSCCCSC-CCCCCCCCSCCSSCCSCGGGSEECBCCCEEECSCHHHHHHHHHHHCCEEEEEEEEGGGGGEEEEEECCCSCC
T ss_pred             CCCCCCc-CCCCcccccccCCCccceeeeeeeeeecccCCcHHHHHHHHHHHCCCEEEEEEecccccCCCCcEEccCCCC
Confidence            4556543 345567777877776666666666666677788999999999999999999999999999999999988766


Q ss_pred             CCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccccccccCccCCcCcCCc
Q psy1664         290 PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNG  350 (524)
Q Consensus       290 ~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~  350 (524)
                      ..++|||+|||||++       ++++|||||||||++|||+|||||+|+..  .|++....
T Consensus       258 ~~~~HaV~iVGyG~~-------~g~~YWivkNSWG~~WGe~GY~ri~rg~n--~CgI~~~~  309 (317)
T 3pbh_A          258 MMGGHAIRILGWGVE-------NGTPYWLVANSWNTDWGDNGFFKILRGQD--HCGIESEV  309 (317)
T ss_dssp             EEEEEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTEEEEECSSC--GGGTTTSC
T ss_pred             CCCCEEEEEEEEEEe-------CCeeEEEEEcCCCCCcCCCcEEEEEcCCC--cccCCCce
Confidence            667999999999986       57999999999999999999999999865  68886543

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=99.95  E-value=3.8e-28  Score=232.50  Aligned_cols=101  Identities=26%  Similarity=0.578  Sum_probs=90.4

Q ss_pred             eeEEEEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         384 GRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      ...++.++.++++||++|+++|||+++|++ ++|++|++|||.. +....++|||+|||||+++       +++||||||
T Consensus       112 i~~~~~v~~~~~~ik~~l~~~gPV~v~~~~-~~f~~Y~~Giy~~-~~~~~~~HaV~iVGyg~~~-------g~~yWivkN  182 (215)
T 3i06_A          112 ITGHVELPQDEAQIAAWLAVNGPVAVAVDA-SSWMTYTGGVMTS-CVSEQLDHGVLLVGYNDSA-------AVPYWIIKN  182 (215)
T ss_dssp             EEEEEECCSCHHHHHHHHHHHCCEEEEECC-TTGGGCCSSEECS-CCCSCCCEEEEEEEEESSS-------SSCEEEEEC
T ss_pred             ecceEEeCChHHHHHHHHHHCCCEEEEEEc-hHHhcCCCCcccC-CCCCccCcEEEEEEEeccC-------CcEEEEEEC
Confidence            445677888999999999999999999999 6899999999975 3344579999999999887       889999999


Q ss_pred             CCCCCCCCCcEEEEEeCCCccCccccceec
Q psy1664         464 SFNTNWGENGLFRIVRGQNECGIEADITAG  493 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~  493 (524)
                      |||++||++|||||+||.|.|||++.+.++
T Consensus       183 SWG~~WGe~Gy~~i~rg~n~cgi~~~~~~~  212 (215)
T 3i06_A          183 SWTTQWGEEGYIRIAKGSNQCLVKEEASSA  212 (215)
T ss_dssp             SBCTTSTBTTEEEEESSSCGGGTTSSEEEE
T ss_pred             CCCCCcccCceEEEecCCCeecCCCceeEE
Confidence            999999999999999999999999997643

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=99.95  E-value=3.2e-28  Score=234.02  Aligned_cols=105  Identities=30%  Similarity=0.640  Sum_probs=93.1

Q ss_pred             eEEEEcC-CCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCC---ccCeeEEEeeecCCCCCCCccCCccEEE
Q psy1664         385 RIAYSLP-ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGP---LGEHAIRIIGWGQEPLGEGTSSVVKYWL  460 (524)
Q Consensus       385 ~~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~---~~~H~v~ivG~g~~~~~~~~~~~~~ywi  460 (524)
                      ...+.++ .++++||++|+++|||+++|+++++|++|++|||..+.+..   .++|||+|||||++.       +.+|||
T Consensus       111 ~~~~~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~-------g~~yWi  183 (220)
T 8pch_A          111 KDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEEN-------GIPYWI  183 (220)
T ss_dssp             EEEEECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEECCSSCCCSTTTCCEEEEEEEEEEET-------TEEEEE
T ss_pred             CCEEEeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCCcccCCcCCCCCCcCCcEEEEEEEEccC-------CeeEEE
Confidence            3445564 57999999999999999999998899999999998765432   589999999999877       889999


Q ss_pred             EEcCCCCCCCCCcEEEEEeCCCccCccccceeccce
Q psy1664         461 VANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK  496 (524)
Q Consensus       461 v~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p~  496 (524)
                      ||||||++||++|||||+||.|.|||++.+..++|.
T Consensus       184 vkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~~~~~p~  219 (220)
T 8pch_A          184 VKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIPL  219 (220)
T ss_dssp             EECSBCTTSTBTTEEEEECSSCGGGTTTSCEEEEEC
T ss_pred             EECCCCcCcccCCEEEEEcCCCccccCCCceeEeec
Confidence            999999999999999999999999999998877765

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=99.95  E-value=4.3e-28  Score=231.99  Aligned_cols=104  Identities=27%  Similarity=0.647  Sum_probs=91.4

Q ss_pred             eeeEEEEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCC---CCCCccCeeEEEeeecCCCCCCCccCCccEE
Q psy1664         383 FGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHV---AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYW  459 (524)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~---~~~~~~~H~v~ivG~g~~~~~~~~~~~~~yw  459 (524)
                      +....+.++.++++||++|+++|||+++|+++ +|++|++|||.++   +....++|||+|||||+++       +++||
T Consensus       106 ~i~~~~~i~~~~~~ik~~l~~~GPV~v~i~~~-~f~~Y~~Giy~~~~~~c~~~~~~HaV~iVGyg~~~-------g~~yW  177 (214)
T 1m6d_A          106 YIQDSVELSQNEQKLAAWLAKRGPISVAINAF-GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRS-------DVPFW  177 (214)
T ss_dssp             CCSEEEECCSCHHHHHHHHHHHCCEEEEECTH-HHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEET-------TEEEE
T ss_pred             EecCEEEeChHHHHHHHHHHhCCCEEEEEEec-hhhhcCCceecCCCCcCCCCcCCEEEEEEEEeecC-------CcEEE
Confidence            34556778889999999999999999999997 5999999999763   3444689999999999976       88999


Q ss_pred             EEEcCCCCCCCCCcEEEEEeCCCccCccccceecc
Q psy1664         460 LVANSFNTNWGENGLFRIVRGQNECGIEADITAGL  494 (524)
Q Consensus       460 iv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~  494 (524)
                      |||||||++||++|||||+||.|.|||++.+.+++
T Consensus       178 ivkNSWG~~WGe~Gy~~i~r~~n~Cgi~~~~~~~~  212 (214)
T 1m6d_A          178 AIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAV  212 (214)
T ss_dssp             EEECSBCTTSTBTTEEEEESSSCGGGTTTTCEEEE
T ss_pred             EEEeCCCCCcccCcEEEEEcCCCccccCceeEEEE
Confidence            99999999999999999999999999999976443

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=99.95  E-value=1e-27  Score=235.31  Aligned_cols=131  Identities=44%  Similarity=0.884  Sum_probs=109.3

Q ss_pred             CCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCC
Q psy1664         210 HSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG  289 (524)
Q Consensus       210 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~  289 (524)
                      .+.|.......+.|...|...+.+.+.....+....+.++.++++||++|+++|||+|+|+++++|++|++|||..+++.
T Consensus       117 ~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~~~~~~  196 (254)
T 3qsd_A          117 YPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGE  196 (254)
T ss_dssp             SCBCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECCSCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCCSSC
T ss_pred             CCCCcccccCCccccccccCCccceeeeeeeeeeeeEecCCcHHHHHHHHHHcCCEEEEEEeccccccccCCeeccCCCC
Confidence            45666555555667777777666656666666665677788999999999999999999999999999999999988776


Q ss_pred             CCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccccccccCccCCcCcCC
Q psy1664         290 PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMN  349 (524)
Q Consensus       290 ~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~  349 (524)
                      ..++|||+|||||++       ++++|||||||||++|||+|||||+|+.+  .|++.+.
T Consensus       197 ~~~~Hav~iVGyg~~-------~g~~ywivkNSWG~~WG~~Gy~~i~rg~n--~CgI~~~  247 (254)
T 3qsd_A          197 TLGGHAIRIIGWGVE-------NKAPYWLIANSWNEDWGENGYFRIVRGRD--ECSIESE  247 (254)
T ss_dssp             EEEEEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTEEEEECSSC--GGGTTSS
T ss_pred             CCCCeEEEEEEEeec-------CCeeEEEEEeCCCCCcccCCeEEEEcCCC--eecCCCc
Confidence            678999999999986       57899999999999999999999999864  6888654

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=99.95  E-value=1.3e-27  Score=236.05  Aligned_cols=121  Identities=47%  Similarity=1.015  Sum_probs=96.5

Q ss_pred             ccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEE
Q psy1664         221 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIG  300 (524)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVG  300 (524)
                      +.|...|...+...+..+..+....+.++.++++||++|+++|||+|+|+++++|+.|++|||.++++...++|||+|||
T Consensus       132 p~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~~~~~~~~~~HaV~iVG  211 (266)
T 3cbj_A          132 PKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILG  211 (266)
T ss_dssp             CCCCCSCCTTCCSCTGGGCBCBSCCEECCSCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCCSSCEEEEEEEEEEE
T ss_pred             CccccccCCCCcceeeeeeeeeeeeEEeCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCeEEecCCCCccCCeEEEEEE
Confidence            34545555444433333333433345677789999999999999999999999999999999998766656799999999


Q ss_pred             eccCCCCCCCccceeEEEEeCCCCCcccccCccccccccCccCCcCcCCc
Q psy1664         301 WGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNG  350 (524)
Q Consensus       301 yg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~  350 (524)
                      ||++       +|++|||||||||++|||+|||||+++..  .|++....
T Consensus       212 yg~~-------~g~~yWivkNSWG~~WGe~Gy~~i~rg~n--~cgI~~~~  252 (266)
T 3cbj_A          212 WGVE-------NGTPYWLVANSWNTDWGDNGFFKILRGQD--HCGIESEV  252 (266)
T ss_dssp             EEEE-------TTEEEEEEECSBCTTSTBTTEEEEECSSC--GGGTTTSC
T ss_pred             eccc-------CCceEEEEEcCCCCccCCCCEEEEEcCCC--cccccCce
Confidence            9986       57899999999999999999999999864  58886544

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=99.95  E-value=1e-27  Score=242.54  Aligned_cols=103  Identities=27%  Similarity=0.651  Sum_probs=91.7

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCC-CCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAG-GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~-~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .+..++ .++++||.+|+++|||+|+|+++.+|++|++|||..+.+ ...++|||+|||||+++       +.+||||||
T Consensus       224 ~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~GVy~~~~c~~~~~~HaV~iVGyg~~~-------g~~yWivkN  296 (329)
T 3qt4_A          224 GYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDN-------GQDYWILKN  296 (329)
T ss_dssp             EEEECCTTCHHHHHHHHHHTCCEEEEECCCGGGTTEEEEEECCSSCCSSCCCEEEEEEEEEEET-------TEEEEEEEC
T ss_pred             eEEEecCCCHHHHHHHHHhCCCEEEEEecChhhhhccCceeecCCCCCCcCCEEEEEEEEEeeC-------CccEEEEEe
Confidence            445665 489999999999999999999988999999999988655 35689999999999887       899999999


Q ss_pred             CCCCCCCCCcEEEEEeCC-CccCccccceecccee
Q psy1664         464 SFNTNWGENGLFRIVRGQ-NECGIEADITAGLPKI  497 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~~  497 (524)
                      |||++||++|||||+||. |.|||++.++  +|.|
T Consensus       297 SWG~~WGe~GY~~i~r~~~n~CgI~~~~~--yp~v  329 (329)
T 3qt4_A          297 SWGSGWGESGYWRQVRNYGNNCGIATAAS--YPAL  329 (329)
T ss_dssp             SBCTTSTBTTEEEEESSSSSGGGTTTTCE--EEEC
T ss_pred             CCCCcccCCcEEEEEeCCCCccCCCCcee--EeeC
Confidence            999999999999999998 9999999955  6653

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=99.94  E-value=1.6e-27  Score=229.02  Aligned_cols=103  Identities=27%  Similarity=0.645  Sum_probs=89.7

Q ss_pred             eEEEEcCCCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCC-CCCCccCeeEEEeeec----CCCCCCCccCCccE
Q psy1664         385 RIAYSLPANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHV-AGGPLGEHAIRIIGWG----QEPLGEGTSSVVKY  458 (524)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~-~~~~~~~H~v~ivG~g----~~~~~~~~~~~~~y  458 (524)
                      ..++.++.++++||++|+++|||+++|+++ ++|++|++|||..+ +....++|||+|||||    +++       +++|
T Consensus       110 ~~~~~v~~~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGygd~~~~~~-------g~~y  182 (220)
T 2xu3_A          110 TGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD-------NNKY  182 (220)
T ss_dssp             SEEEECCSCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCSSCCCEEEEEEEEEECCCSSS-------CCEE
T ss_pred             eeEEEeCCCHHHHHHHHHhcCCEEEEEeecCcccccccceEEcCCCCCCCCCCeEEEEEEcCCccccCC-------CCcE
Confidence            345567668999999999999999999997 58999999999876 4444689999999999    444       7899


Q ss_pred             EEEEcCCCCCCCCCcEEEEEeCC-CccCccccceeccce
Q psy1664         459 WLVANSFNTNWGENGLFRIVRGQ-NECGIEADITAGLPK  496 (524)
Q Consensus       459 wiv~NSWG~~WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~  496 (524)
                      ||||||||++||++|||||+|+. |.|||++.+.  +|.
T Consensus       183 WivkNSWG~~WG~~Gy~~i~~~~~n~Cgi~~~~~--~p~  219 (220)
T 2xu3_A          183 WLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS--YPT  219 (220)
T ss_dssp             EEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCE--EEE
T ss_pred             EEEEeCCCCCcccCcEEEEecCCCCcCCccccce--eee
Confidence            99999999999999999999997 8999999965  554

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=99.94  E-value=2.6e-27  Score=238.31  Aligned_cols=105  Identities=30%  Similarity=0.625  Sum_probs=92.4

Q ss_pred             eeEEEEcC-CCHHHHHHHHHhCCCEEEEEecccccccccccEEeCC-CCCCccCeeEEEeeecCCCCCCCccCCccEEEE
Q psy1664         384 GRIAYSLP-ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHV-AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLV  461 (524)
Q Consensus       384 ~~~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~-~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv  461 (524)
                      ...++.++ .++++||.+|+++|||+|+|+++.+|++|++|||..+ |....++|||+|||||+++       |++||||
T Consensus       199 i~~~~~v~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~~-------g~~yWiv  271 (310)
T 2o6x_A          199 VTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQG-------GTDYWIV  271 (310)
T ss_dssp             EEEEEEECSCCHHHHHHHHHHHCCEEEEECCCHHHHTEEEEEECCSSCCTTCCCEEEEEEEEEEET-------TEEEEEE
T ss_pred             eCeEEEeCCCCHHHHHHHHHhcCCeEEEEecchhhhhCCCceecCCCCCCCCCCEEEEEEEEeccC-------CceEEEE
Confidence            44556665 5899999999999999999999889999999999865 4445689999999999986       8999999


Q ss_pred             EcCCCCCCCCCcEEEEEeCC-CccCccccceecccee
Q psy1664         462 ANSFNTNWGENGLFRIVRGQ-NECGIEADITAGLPKI  497 (524)
Q Consensus       462 ~NSWG~~WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~~  497 (524)
                      |||||++||++|||||+|+. |.|||++.++  +|.+
T Consensus       272 kNSWG~~WGe~GY~~i~r~~~n~Cgi~~~~~--~p~~  306 (310)
T 2o6x_A          272 KNSWGLSWGERGYIRMVRNRGNMCGIASLAS--LPMV  306 (310)
T ss_dssp             ECSBCTTSTBTTEEEEECSSSSGGGTTTSEE--EEEE
T ss_pred             EeCCCCccCCCcEEEEEcCCCCcCCccceee--EEEe
Confidence            99999999999999999997 8999999954  6665

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=99.94  E-value=1.4e-27  Score=228.66  Aligned_cols=102  Identities=29%  Similarity=0.597  Sum_probs=89.9

Q ss_pred             EEEEcCC-CHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCC-CCccCeeEEEeeecCCCCCCCccCCccEEEEE
Q psy1664         386 IAYSLPA-NEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAG-GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA  462 (524)
Q Consensus       386 ~~~~~~~-~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~-~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~  462 (524)
                      .++.++. ++++||++|+++|||+++|+++ ++|++|++|||..+.+ ...++|||+|||||+++       +.+|||||
T Consensus       109 ~~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~~~HaV~iVGyg~~~-------g~~yWivk  181 (215)
T 3kwz_A          109 GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK-------GNKHWIIK  181 (215)
T ss_dssp             CEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCTTCCCEEEEEEEEEEET-------TEEEEEEE
T ss_pred             ceEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECCCCCCCChhhCEEEEEEEeccC-------CceEEEEE
Confidence            3445553 8999999999999999999997 6899999999987655 45689999999999886       88999999


Q ss_pred             cCCCCCCCCCcEEEEEeCC-CccCccccceeccce
Q psy1664         463 NSFNTNWGENGLFRIVRGQ-NECGIEADITAGLPK  496 (524)
Q Consensus       463 NSWG~~WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~  496 (524)
                      ||||++||++|||||+|+. |.|||++.++  +|.
T Consensus       182 NSWG~~WG~~Gy~~i~r~~~n~Cgi~~~~~--~p~  214 (215)
T 3kwz_A          182 NSWGENWGNKGYILMARNKNNACGIANLAS--FPK  214 (215)
T ss_dssp             CSBCTTSTBTTEEEEESSSSSGGGTTSSCE--EEC
T ss_pred             CCcCcccccCCEEEEecCCCCccCcCCcee--eee
Confidence            9999999999999999997 9999999855  564

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=99.94  E-value=2.2e-27  Score=227.77  Aligned_cols=102  Identities=30%  Similarity=0.640  Sum_probs=90.5

Q ss_pred             EEEcC-CCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcC
Q psy1664         387 AYSLP-ANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANS  464 (524)
Q Consensus       387 ~~~~~-~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NS  464 (524)
                      +..++ .++++||++|+++|||+++|++. ++|++|++|||..+.+...++|||+|||||+++       +++|||||||
T Consensus       114 ~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~~-------g~~ywivkNS  186 (218)
T 3ovx_A          114 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN-------GKEYWLVKNS  186 (218)
T ss_dssp             EEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECCTTCCSCCCEEEEEEEEEEET-------TEEEEEEECS
T ss_pred             EEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceecCCCCCcccCcEEEEEEEeccC-------CceEEEEECC
Confidence            34554 48999999999999999999996 489999999999876666789999999999886       8899999999


Q ss_pred             CCCCCCCCcEEEEEeCC-CccCccccceecccee
Q psy1664         465 FNTNWGENGLFRIVRGQ-NECGIEADITAGLPKI  497 (524)
Q Consensus       465 WG~~WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~~  497 (524)
                      ||++||++|||||+|+. |.|||++.++  +|.|
T Consensus       187 WG~~WG~~Gy~~i~~~~~n~cgi~~~~~--~p~~  218 (218)
T 3ovx_A          187 WGHNFGEEGYIRMARNKGNHCGIASFPS--YPEI  218 (218)
T ss_dssp             BCTTSTBTTEEEEECSSSSGGGTTTSCE--EEEC
T ss_pred             CCCccccCCEEEEecCCCCcccccCcee--eeeC
Confidence            99999999999999998 9999999955  6653

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=99.94  E-value=2.4e-27  Score=238.24  Aligned_cols=107  Identities=23%  Similarity=0.332  Sum_probs=94.1

Q ss_pred             eEEEEcC-CCHHHHHHHHHh-CCCEEEEEeccc--ccccccccEEeCCCCC--CccCeeEEEeeecCCCCCCCccCCccE
Q psy1664         385 RIAYSLP-ANEETIMREIFR-HGPVEGSMTIYA--DMILYKTGIYKHVAGG--PLGEHAIRIIGWGQEPLGEGTSSVVKY  458 (524)
Q Consensus       385 ~~~~~~~-~~~~~~~~~~~~-~gPv~~~~~~~~--~f~~y~~gi~~~~~~~--~~~~H~v~ivG~g~~~~~~~~~~~~~y  458 (524)
                      ..+..++ .++++||.+|++ +|||+|+|+++.  +|++|++|||..+.+.  .. +|||+|||||+++       |++|
T Consensus       194 ~~y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y~~GVy~~~~c~~~~~-~HaV~iVGyg~~~-------g~~y  265 (312)
T 1xkg_A          194 SNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN-YHAVNIVGYSNAQ-------GVDY  265 (312)
T ss_dssp             SEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCCSSCCE-EEEEEEEEEEEET-------TEEE
T ss_pred             eeEEEeCCCCHHHHHHHHHhcCCCEEEEEEecccccccccCCcEEcCCCCCCCcC-ceEEEEEEEeccC-------CceE
Confidence            3445665 489999999999 999999999987  8999999999876443  36 9999999999886       8999


Q ss_pred             EEEEcCCCCCCCCCcEEEEEeCCCccCccccceeccceecc
Q psy1664         459 WLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPKIGL  499 (524)
Q Consensus       459 wiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p~~~~  499 (524)
                      ||||||||++||++|||||+|+.|.|||++.+++++|..+.
T Consensus       266 WivkNSWG~~WGe~GY~~i~r~~n~CgI~~~~~~~~~~~~~  306 (312)
T 1xkg_A          266 WIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVILGQTG  306 (312)
T ss_dssp             EEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEECTTCC
T ss_pred             EEEEeCCCCcccCCcEEEEEcCCCcccccceeEEeeccCCC
Confidence            99999999999999999999999999999998877765543

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=99.94  E-value=3.2e-27  Score=238.18  Aligned_cols=102  Identities=29%  Similarity=0.620  Sum_probs=90.1

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .++.++ .++++||.+|+++|||+|+|+++ .+|++|++|||..+.+...++|||+|||||+++       +.+||||||
T Consensus       210 ~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~~~HaV~iVGyg~~~-------g~~yWivkN  282 (315)
T 2c0y_A          210 KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN-------GKEYWLVKN  282 (315)
T ss_dssp             EEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTEEEEEECCTTCCSCCCEEEEEEEEEEET-------TEEEEEEEC
T ss_pred             CeEEeCCCCHHHHHHHHHHcCCEEEEEecCchhhhccCCCcccCCCCCCcCCEEEEEEEEeecC-------CCcEEEEEc
Confidence            445665 48999999999999999999997 689999999998874444789999999999886       889999999


Q ss_pred             CCCCCCCCCcEEEEEeCC-CccCccccceeccce
Q psy1664         464 SFNTNWGENGLFRIVRGQ-NECGIEADITAGLPK  496 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~  496 (524)
                      |||++||++|||||+|+. |.|||++.++  +|.
T Consensus       283 SWG~~WGe~GY~~i~r~~~n~CgI~~~~~--~p~  314 (315)
T 2c0y_A          283 SWGHNFGEEGYIRMARNKGNHCGIASFPS--YPE  314 (315)
T ss_dssp             SBCTTSTBTTEEEEECSSSSGGGTTTSCE--EEE
T ss_pred             CCCCCcCCCcEEEEEcCCCCccCcCceeE--Eee
Confidence            999999999999999995 9999999965  554

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=99.94  E-value=3.5e-27  Score=237.84  Aligned_cols=102  Identities=29%  Similarity=0.604  Sum_probs=89.9

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCC-CCCCccCeeEEEeeecCCCCCCCccCCccEEEEE
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHV-AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVA  462 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~-~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~  462 (524)
                      .++.++ .++++||++|+++|||+|+|+++ .+|++|++|||..+ |....++|||+|||||+++       +.+|||||
T Consensus       208 ~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~~-------g~~yWivk  280 (314)
T 1by8_A          208 GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK-------GNKHWIIK  280 (314)
T ss_dssp             CEEECCSSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEECBCCTTCCSSCCCEEEEEEEEEEET-------TEEEEEEE
T ss_pred             cEEEecCCCHHHHHHHHHHcCCEEEEEEeChHHhhhccCceecCCCCCCCCCCeEEEEEEEeccC-------CceEEEEE
Confidence            445665 48999999999999999999997 68999999999877 4444689999999999886       88999999


Q ss_pred             cCCCCCCCCCcEEEEEeCC-CccCccccceeccce
Q psy1664         463 NSFNTNWGENGLFRIVRGQ-NECGIEADITAGLPK  496 (524)
Q Consensus       463 NSWG~~WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~  496 (524)
                      ||||++||++|||||+||. |.|||++.++  +|.
T Consensus       281 NSWG~~WGe~GY~~i~r~~~n~CgI~~~~~--~p~  313 (314)
T 1by8_A          281 NSWGENWGNKGYILMARNKNNACGIANLAS--FPK  313 (314)
T ss_dssp             CSBTTTSTBTTEEEECCSSSCGGGTTSSCE--EEC
T ss_pred             cCCCCCcCcCCEEEEEcCCCCcCCccCeeE--Eee
Confidence            9999999999999999995 9999999965  554

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=99.94  E-value=1.1e-26  Score=222.21  Aligned_cols=101  Identities=26%  Similarity=0.524  Sum_probs=87.0

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEeccc-ccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~~-~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .+..++ .++++||++|++ |||+++|+++. +|++|++|||..++.. .++|||+|||||+++       +++||||||
T Consensus       108 ~~~~v~~~~~~~ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~-~~~HaV~iVGyg~~~-------g~~yWivkN  178 (215)
T 1iwd_A          108 GFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTGPCGT-AQNHGVVIVGYGTQS-------GKNYWIVRN  178 (215)
T ss_dssp             EEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCCCCC-CCCEEEEEEEEEEET-------TEEEEEEEC
T ss_pred             cEEEeCCCcHHHHHHHHHh-CCEEEEEecCCcchhhcCCceECCCCCC-cCCEEEEEEEEeccC-------CccEEEEEe
Confidence            334554 478899999876 99999999976 7999999999876554 579999999999886       889999999


Q ss_pred             CCCCCCCCCcEEEEEeCC----CccCccccceecccee
Q psy1664         464 SFNTNWGENGLFRIVRGQ----NECGIEADITAGLPKI  497 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~  497 (524)
                      |||++||++|||||+|+.    |.|||++.+.  +|.+
T Consensus       179 SWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~--~p~~  214 (215)
T 1iwd_A          179 SWGQNWGNQGYIWMERNVASSAGLCGIAQLPS--YPTK  214 (215)
T ss_dssp             SBCTTSTBTTEEEEECSCSSTTCGGGTTSSCE--EEEC
T ss_pred             CCCCCcCCCcEEEEEcCCCCCCCCCCccccce--eeee
Confidence            999999999999999997    8999999854  5654

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=99.94  E-value=4.7e-27  Score=238.24  Aligned_cols=103  Identities=30%  Similarity=0.567  Sum_probs=90.9

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCC-CCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAG-GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~-~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .+..++ .++++||.+|+++|||+|+|++..+|++|++|||..+.+ ...++|||+|||||+++       +.+||||||
T Consensus       226 ~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~~-------g~~yWivkN  298 (331)
T 3qj3_A          226 GYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNEN-------GQDYWLVKN  298 (331)
T ss_dssp             EEEEESSCCHHHHHHHHHHHCCEEEEECCCTTGGGEEEEEECCTTCCSSCCCEEEEEEEEEEET-------TEEEEEEEC
T ss_pred             EEEEeCCCCHHHHHHHHHhCCCEEEEEEcccccccccCceEeCCCCCCCcCCEEEEEEEEeccC-------CceEEEEEc
Confidence            344555 489999999999999999999987799999999988655 35689999999999876       899999999


Q ss_pred             CCCCCCCCCcEEEEEeCC-CccCccccceecccee
Q psy1664         464 SFNTNWGENGLFRIVRGQ-NECGIEADITAGLPKI  497 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~~  497 (524)
                      |||++||++|||||+||. |.|||++.+.  +|.|
T Consensus       299 SWG~~WGe~GY~~i~r~~~n~CgI~~~~~--~p~v  331 (331)
T 3qj3_A          299 SWGDGWGLDGYFKIARNANNHCGIAGVAS--VPTL  331 (331)
T ss_dssp             SBCTTSTBTTEEEEECSSSSGGGTTTSCE--EEEC
T ss_pred             CCCCCcCCCCEEEEEcCCCCccCcCCcee--eeeC
Confidence            999999999999999998 9999999955  6653

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=99.94  E-value=3.8e-27  Score=237.74  Aligned_cols=104  Identities=28%  Similarity=0.648  Sum_probs=90.2

Q ss_pred             eEEEEcCCCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCC-CCCCccCeeEEEeeec---CCCCCCCccCCccEE
Q psy1664         385 RIAYSLPANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHV-AGGPLGEHAIRIIGWG---QEPLGEGTSSVVKYW  459 (524)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~-~~~~~~~H~v~ivG~g---~~~~~~~~~~~~~yw  459 (524)
                      ..++.++.++++||.+|+++|||+|+|+++ .+|++|++|||..+ |....++|||+|||||   ++.      .+++||
T Consensus       206 ~~~~~v~~~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGygd~~~~~------~g~~yW  279 (316)
T 1cs8_A          206 AGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES------DNNKYW  279 (316)
T ss_dssp             CCEEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCTTCCSSCCCEEEEEEEEEEECCSS------CCEEEE
T ss_pred             ccEEEeCCCHHHHHHHHHhcCCEEEEEecCChhhccccCceECCCCCCCCCCCEEEEEEEecCCcccC------CCCcEE
Confidence            345567668999999999999999999997 48999999999876 4444689999999999   652      288999


Q ss_pred             EEEcCCCCCCCCCcEEEEEeCC-CccCccccceeccce
Q psy1664         460 LVANSFNTNWGENGLFRIVRGQ-NECGIEADITAGLPK  496 (524)
Q Consensus       460 iv~NSWG~~WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~  496 (524)
                      |||||||++||++|||||+|+. |.|||++.++  +|.
T Consensus       280 ivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~--~p~  315 (316)
T 1cs8_A          280 LVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS--YPT  315 (316)
T ss_dssp             EEECSBCTTSTBTTEEEEECSSSSGGGTTTSCE--EEC
T ss_pred             EEEcCCCCCcccCCEEEEECCCCCccCccceee--Eee
Confidence            9999999999999999999997 8999999955  554

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=99.94  E-value=1.3e-26  Score=222.84  Aligned_cols=105  Identities=26%  Similarity=0.517  Sum_probs=89.2

Q ss_pred             eEEEEcCCCHHHHHHHHHhCCCEEEEEeccc-ccccccc-cEEeCCCCCC---ccCeeEEEeeecCCCCCCCccCCccEE
Q psy1664         385 RIAYSLPANEETIMREIFRHGPVEGSMTIYA-DMILYKT-GIYKHVAGGP---LGEHAIRIIGWGQEPLGEGTSSVVKYW  459 (524)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~-~f~~y~~-gi~~~~~~~~---~~~H~v~ivG~g~~~~~~~~~~~~~yw  459 (524)
                      ..++.++.++++||++| .+|||+++|+++. +|++|++ |||..+.+..   .++|||+|||||++..      +.+||
T Consensus       107 ~~~~~v~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~~------g~~yW  179 (222)
T 3u8e_A          107 DGYTNVPNSSSALLDAV-AKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGT------NADYW  179 (222)
T ss_dssp             CEEEECCSCHHHHHHHH-HHSCEEEEECCCSHHHHTCCCSSCBCCTTCCCCGGGCCEEEEEEEEEESST------TCEEE
T ss_pred             ccEEEeCCcHHHHHHHH-hCCCEEEEEEecChhhhcEeCCceECCCcccCCCCcCCEEEEEEEEeecCC------CCcEE
Confidence            34556667899999999 5799999999975 8999999 9998844433   5899999999998752      77999


Q ss_pred             EEEcCCCCCCCCCcEEEEEeCCC----ccCccccceeccceec
Q psy1664         460 LVANSFNTNWGENGLFRIVRGQN----ECGIEADITAGLPKIG  498 (524)
Q Consensus       460 iv~NSWG~~WG~~Gy~~i~~g~~----~cgi~~~~~~~~p~~~  498 (524)
                      |||||||++||++|||||+||.|    .|||++.++  +|.+.
T Consensus       180 ivkNSWG~~WGe~Gy~~i~r~~~~~~g~Cgi~~~~~--~p~~~  220 (222)
T 3u8e_A          180 IVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGS--YPTKS  220 (222)
T ss_dssp             EEECSBCTTSTBTTEEEEECSCSCTTCGGGTTSSCE--EEECC
T ss_pred             EEECCCCCCcccCCEEEEEcCCCCCCCcCCccccce--EEEEe
Confidence            99999999999999999999987    999999965  66643

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=99.94  E-value=1.4e-26  Score=221.73  Aligned_cols=101  Identities=30%  Similarity=0.516  Sum_probs=87.3

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .+..++ .++++||++|++ |||+++|+++ ++|++|++|||..++.. .++|||+|||||++.       +.+||||||
T Consensus       109 ~y~~v~~~~~~~i~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~~~~~~-~~~HaV~iVGyg~~~-------g~~ywivkN  179 (216)
T 1ppo_A          109 GVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGPCGT-KVDHAVTAVGYGKSG-------GKGYILIKN  179 (216)
T ss_dssp             EEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECCSCCS-CCCEEEEEEEEEEET-------TEEEEEEEC
T ss_pred             cEEEECCCCHHHHHHHHHh-CCEEEEEecCChhhhhcCCceECCCCCC-CCCEEEEEEEeeccC-------CccEEEEEe
Confidence            334555 478999999987 9999999996 68999999999876554 479999999999987       889999999


Q ss_pred             CCCCCCCCCcEEEEEeCC----CccCccccceecccee
Q psy1664         464 SFNTNWGENGLFRIVRGQ----NECGIEADITAGLPKI  497 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~  497 (524)
                      |||++||++|||||+|+.    |.|||++.+.  +|.+
T Consensus       180 SWG~~WG~~Gy~~i~~~~~~~~n~Cgi~~~~~--~p~~  215 (216)
T 1ppo_A          180 SWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSY--YPTK  215 (216)
T ss_dssp             SBCSSSTBTTEEEEECCCSSSSCGGGTTSCCE--EEEC
T ss_pred             CCCCCcccCcEEEEEcCCCCCCCcCcccccee--eEee
Confidence            999999999999999985    8999999955  5654

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=99.94  E-value=6.5e-27  Score=236.62  Aligned_cols=96  Identities=44%  Similarity=0.902  Sum_probs=85.6

Q ss_pred             eeecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCC
Q psy1664         245 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN  324 (524)
Q Consensus       245 ~~~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG  324 (524)
                      .|.+ .++++||++|+++|||+|+|+++++|++|++|||..+++...++|||+|||||++       ++++|||||||||
T Consensus       212 ~y~v-~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~~~~~~~~HaV~iVGyG~~-------~g~~YWivkNSWG  283 (325)
T 3hhi_A          212 SYAL-QGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTS-------NGVPYWKIANSWN  283 (325)
T ss_dssp             EEEE-CSHHHHHHHHHHHCCEEEEEEEEHHHHTCCSSEECCCSCCEEEEEEEEEEEEEEE-------TTEEEEEEECSBC
T ss_pred             ceEe-CCHHHHHHHHHHCCCEEEEEEeccccccccCceecCCCCCCCCCEEEEEEEEEec-------CCceEEEEEeCCC
Confidence            3445 7899999999999999999999999999999999988776678999999999976       5799999999999


Q ss_pred             CcccccCccccccccCccCCcCcCCc
Q psy1664         325 TNWGENGLFRIGCRPYEIPCERYMNG  350 (524)
Q Consensus       325 ~~WGe~Gy~ri~~~~~~~~c~~~~~~  350 (524)
                      ++|||+|||||+|+.+  .|++.+..
T Consensus       284 ~~WGe~GY~~i~rg~n--~CGI~~~~  307 (325)
T 3hhi_A          284 TEWGMDGYFLIRRGSS--ECGIEDGG  307 (325)
T ss_dssp             TTSTBTTEEEEECSSC--GGGTTSCE
T ss_pred             CCcccCCEEEEEcCCC--eecCccce
Confidence            9999999999999864  68886543

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=99.93  E-value=3.2e-26  Score=223.30  Aligned_cols=101  Identities=29%  Similarity=0.568  Sum_probs=88.3

Q ss_pred             EEcC-CCHHHHHHHHHh---CCCEEEEEecccccccccccEEeCC-CCCCc-cCeeEEEeeecCCCCCCCccCCccEEEE
Q psy1664         388 YSLP-ANEETIMREIFR---HGPVEGSMTIYADMILYKTGIYKHV-AGGPL-GEHAIRIIGWGQEPLGEGTSSVVKYWLV  461 (524)
Q Consensus       388 ~~~~-~~~~~~~~~~~~---~gPv~~~~~~~~~f~~y~~gi~~~~-~~~~~-~~H~v~ivG~g~~~~~~~~~~~~~ywiv  461 (524)
                      +.++ .++++||++|++   +|||+++|++ ++|++|++|||..+ +.... ++|||+|||||+++       +++||||
T Consensus       115 ~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~-~~f~~Y~~Giy~~~~c~~~~~~~HaV~iVGyg~~~-------g~~yWiv  186 (246)
T 2b1m_A          115 ILSNESTESEAESSLQSFVLEQPISVSIDA-KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSED-------GVDYWIA  186 (246)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHSCEEEEECC-TTGGGCCSSEECCTTCCSSCCCCEEEEEEEEEEET-------TEEEEEE
T ss_pred             eecCCChHHHHHHHHHhhccCCCEEEEEEc-chhhcccceeecCCCCCCCCcCceEEEEEEEeccC-------CceEEEE
Confidence            4554 488999999999   6999999999 89999999999874 44333 89999999999886       8899999


Q ss_pred             EcCCCCCCCCCcEEEEEeCC----CccCccccceeccceec
Q psy1664         462 ANSFNTNWGENGLFRIVRGQ----NECGIEADITAGLPKIG  498 (524)
Q Consensus       462 ~NSWG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~~  498 (524)
                      |||||++||++|||||+|+.    |.|||++.++  +|.+.
T Consensus       187 kNSWG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~--~p~~~  225 (246)
T 2b1m_A          187 KNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFAS--YPIIE  225 (246)
T ss_dssp             ECSBCTTSTBTTEEEEECCSSCTTCGGGTTSEEE--EEECC
T ss_pred             EeCCCCcccCCcEEEEEcCCCCCCccccccceee--EEEec
Confidence            99999999999999999997    8999999855  66654

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=99.93  E-value=2.1e-26  Score=220.73  Aligned_cols=102  Identities=25%  Similarity=0.507  Sum_probs=87.5

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .+..++ .++++||++|++ |||+++|+++ ++|++|++|||..++.. .++|+|+|||||++.       +++||||||
T Consensus       109 ~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~~~~-~~~HaV~iVGyg~~~-------g~~yWivkN  179 (218)
T 1yal_A          109 GYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGPCGT-KLDHAVTAVGYGTSD-------GKNYIIIKN  179 (218)
T ss_dssp             EEEECCSSBHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECCSCCS-CCCEEEEEEEEEEET-------TEEEEEEEC
T ss_pred             eEEEeCCCCHHHHHHHHHh-CCEEEEEeccchhccccCCceECCCCCC-CCCEEEEEEEeeccC-------CccEEEEEe
Confidence            334555 378889988876 9999999996 78999999999876554 479999999999987       889999999


Q ss_pred             CCCCCCCCCcEEEEEeCC----CccCccccceeccceec
Q psy1664         464 SFNTNWGENGLFRIVRGQ----NECGIEADITAGLPKIG  498 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~~  498 (524)
                      |||++||++|||||+|+.    |.|||++.+.  +|.+.
T Consensus       180 SWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~--~p~~~  216 (218)
T 1yal_A          180 SWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSY--YPFKG  216 (218)
T ss_dssp             SBCTTSTBTTEEEEECCCSBSCCGGGTTSSCE--EEECC
T ss_pred             CCCCCcccCcEEEEECCCCCCCCcccccccee--eEEEe
Confidence            999999999999999985    8999999954  66653

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A

Probab=99.93  E-value=2.5e-26  Score=220.74  Aligned_cols=102  Identities=31%  Similarity=0.620  Sum_probs=86.9

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .+..++ .++++|+++| .+|||+++|++. ++|++|++|||..++.. .++|||+|||||+++       +++||||||
T Consensus       112 ~~~~v~~~~~~~l~~~l-~~GPV~v~~~~~~~~f~~Y~~Giy~~~~~~-~~~HaV~iVGyg~~~-------g~~yWivkN  182 (220)
T 3p5u_A          112 TYENVPYNNEWALQTAV-AYQPVSVALEAAGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTEG-------GIDYWIVKN  182 (220)
T ss_dssp             EEEECCTTCHHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEECCCCCC-SCCEEEEEEEEEEET-------TEEEEEEEC
T ss_pred             cEEEeCCCcHHHHHHHH-hcCCEEEEEecCchhhccccCceECCCCCC-ccceEEEEEEEecCC-------CceEEEEEC
Confidence            445564 4677888877 789999999996 68999999999876544 479999999999876       889999999


Q ss_pred             CCCCCCCCCcEEEEEeCCC---ccCccccceeccceec
Q psy1664         464 SFNTNWGENGLFRIVRGQN---ECGIEADITAGLPKIG  498 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~~---~cgi~~~~~~~~p~~~  498 (524)
                      |||++||++|||||+||.|   .|||++.++  +|.+.
T Consensus       183 SWG~~WGe~Gy~~i~r~~~~~~~Cgi~~~~~--~p~~~  218 (220)
T 3p5u_A          183 SWGTTWGEEGYMRIQRNVGGVGQCGIAKKAS--YPVKY  218 (220)
T ss_dssp             SBCTTSTBTTEEEEECCCCTTCGGGTTSSCE--EEECS
T ss_pred             CCCCCcccCCEEEEECCCCCCCccCcccccc--eEEEe
Confidence            9999999999999999987   999999966  55543

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=99.93  E-value=3.2e-26  Score=220.02  Aligned_cols=102  Identities=30%  Similarity=0.627  Sum_probs=87.4

Q ss_pred             EEEEcCC-CHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLPA-NEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~~-~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .+..++. ++++||++|++ |||+++|+++ .+|++|++|||..++.. .++|||+|||||+++       +++||||||
T Consensus       111 ~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~~~~-~~~HaV~iVGyg~~~-------g~~yWivkN  181 (221)
T 1cqd_A          111 SYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTGSCNI-SANHALTVVGYGTEN-------DKDFWIVKN  181 (221)
T ss_dssp             EEEECCSSCHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECCCCCC-CCCEEEEEEEEEEET-------TEEEEEEEC
T ss_pred             cEEEeCCchHHHHHHHHHh-CCEEEEEeccCcccccccCccccCCCCC-cCCeEEEEEEEcccC-------CCcEEEEEe
Confidence            3344554 68899998865 9999999997 68999999999876554 589999999999886       889999999


Q ss_pred             CCCCCCCCCcEEEEEeCC----CccCccccceeccceec
Q psy1664         464 SFNTNWGENGLFRIVRGQ----NECGIEADITAGLPKIG  498 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~~  498 (524)
                      |||++||++|||||+|+.    |.|||++.+.  +|.+.
T Consensus       182 SWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~--~p~~~  218 (221)
T 1cqd_A          182 SWGKNWGESGYIRAERNIENPDGKCGITRFAS--YPVKK  218 (221)
T ss_dssp             SBCTTSTBTTEEEEECSCSSTTCGGGTTSSCE--EEECC
T ss_pred             CCCCCcccCCEEEEEcCCCCCCcccceeeeee--EEEec
Confidence            999999999999999983    8999999954  67654

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=99.93  E-value=3e-26  Score=231.59  Aligned_cols=101  Identities=29%  Similarity=0.494  Sum_probs=87.7

Q ss_pred             EEEEcCC-CHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLPA-NEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~~-~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .++.++. ++++|+++|++ |||+|+|+++ .+|++|++|||.++|.. .++|+|+|||||+++       |.+||||||
T Consensus       215 ~~~~v~~~~e~~l~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~-~~~HaV~iVGyg~~~-------g~~yWivkN  285 (322)
T 1pci_A          215 GVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGPCGT-KVDGAVTAVGYGKSG-------GKGYILIKN  285 (322)
T ss_dssp             CEEECCSSBHHHHHHHHHH-SCEEEEECTTCHHHHTEEEEEECCSCCS-CCCEEEEEEEEEEET-------TEEEEEEEC
T ss_pred             eEEEeCCCcHHHHHHHHHH-CCEEEEEecccccccccCCeEeCCCCCC-CCCEEEEEEEEeccC-------CccEEEEEe
Confidence            3445654 78899999986 9999999996 68999999999876554 479999999999987       889999999


Q ss_pred             CCCCCCCCCcEEEEEeCC----CccCccccceecccee
Q psy1664         464 SFNTNWGENGLFRIVRGQ----NECGIEADITAGLPKI  497 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~  497 (524)
                      |||++||++|||||+|+.    |.|||++.++  +|.+
T Consensus       286 SWG~~WGe~GY~~i~r~~~~~~n~CgI~~~~~--yp~~  321 (322)
T 1pci_A          286 SWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSY--YPTK  321 (322)
T ss_dssp             SBCSSSTBTTEEEEECCCSBSSCGGGGGGCCE--EECC
T ss_pred             CCCCcccCCeEEEEEcCCCCCCCcCCccccee--EEEe
Confidence            999999999999999996    8999999954  6654

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*

Probab=99.93  E-value=2.2e-26  Score=221.44  Aligned_cols=99  Identities=25%  Similarity=0.403  Sum_probs=86.9

Q ss_pred             EEEEc-CCCHHHHHHHHHh-CCCEEEEEec--ccccccccccEEeCC-CCCCccCeeEEEeeecCCCCCCCccCCccEEE
Q psy1664         386 IAYSL-PANEETIMREIFR-HGPVEGSMTI--YADMILYKTGIYKHV-AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWL  460 (524)
Q Consensus       386 ~~~~~-~~~~~~~~~~~~~-~gPv~~~~~~--~~~f~~y~~gi~~~~-~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywi  460 (524)
                      .+..+ +.++++||++|++ +|||+++|.+  .++|++|++|||... ++...++|||+|||||++.       +++|||
T Consensus       115 ~~~~v~~~~~~~ik~~l~~~~gpV~v~~~~~~~~~f~~Y~~gi~~~~~~~~~~~~HaV~iVGyg~~~-------g~~ywi  187 (222)
T 3f5v_A          115 NYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ-------GVDYWI  187 (222)
T ss_dssp             EEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCCSSSCEEEEEEEEEEEEET-------TEEEEE
T ss_pred             cEEEeCCCCHHHHHHHHHhcCCCEEEEEEeccchhhhccCCCceecCCCCCCccCcEEEEEEEeccC-------CCEEEE
Confidence            34455 4689999999999 9999999998  468999999987543 4456689999999999876       889999


Q ss_pred             EEcCCCCCCCCCcEEEEEeCCCccCccccce
Q psy1664         461 VANSFNTNWGENGLFRIVRGQNECGIEADIT  491 (524)
Q Consensus       461 v~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~  491 (524)
                      ||||||++||++|||||+||.|.|||++.++
T Consensus       188 vkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~~  218 (222)
T 3f5v_A          188 VRNSWDTNWGDNGYGYFAANIDLMMIEEYPY  218 (222)
T ss_dssp             EECSBCTTSTBTTEEEEECSSCGGGTTTSCE
T ss_pred             EEcCCCCCcccCCEEEEEcCCCeecCCCcee
Confidence            9999999999999999999999999999965

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=99.93  E-value=6.4e-26  Score=216.68  Aligned_cols=99  Identities=30%  Similarity=0.566  Sum_probs=84.8

Q ss_pred             eEEEEcCCCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         385 RIAYSLPANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      ..++.++.++++++++++.+|||+++|+++ ++|++|++|||..++ ...++|||+|||||+           +||||||
T Consensus       108 ~~~~~v~~~~~~~~~~~~~~GPV~v~i~~~~~~f~~y~~Giy~~~~-~~~~~HaV~iVGyg~-----------~yWivkN  175 (213)
T 3ioq_A          108 DGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPC-GTSIDHAVAAVGYGN-----------DYILIKN  175 (213)
T ss_dssp             CEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCSC-CSCCCEEEEEEEEET-----------TEEEEEC
T ss_pred             ccEEEeCCchHHHHHHHHHhCCEEEEEEechhhhhhccCCeEcCCC-CCccCceEEEEecCC-----------CeEEEEC
Confidence            345567666677777788889999999997 789999999998854 445799999999974           5999999


Q ss_pred             CCCCCCCCCcEEEEEeCC----CccCccccceecccee
Q psy1664         464 SFNTNWGENGLFRIVRGQ----NECGIEADITAGLPKI  497 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~  497 (524)
                      |||++||++|||||+||.    |.|||++.+.  +|.+
T Consensus       176 SWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~--~p~~  211 (213)
T 3ioq_A          176 SWGTGWGEGGYIRIKRGSGNPQGACGVLSDSV--FPTK  211 (213)
T ss_dssp             SBCTTSTBTTEEEEESSCSSTTCGGGTTSCCE--EEEC
T ss_pred             CCCCCcccCCeEEEEcCCCCCCCcccccCcce--EeEe
Confidence            999999999999999997    8999999855  6765

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=99.93  E-value=1.9e-25  Score=213.15  Aligned_cols=97  Identities=33%  Similarity=0.600  Sum_probs=83.2

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEeccc-ccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~~-~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .+..++ .++++|+++|++ |||+++|+++. +|++|++|||..++.. .++|||+|||||+           +||||||
T Consensus       109 ~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~~~~-~~~HaV~iVGyg~-----------~yWivkN  175 (212)
T 2cio_A          109 GVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGPCGN-KVDHAVAAVGYGP-----------NYILIKN  175 (212)
T ss_dssp             EEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCCCCS-CCCEEEEEEEEET-----------TEEEEEC
T ss_pred             eEEEeCCccHHHHHHHHHh-CCEEEEEeccCcchhhcCCceecCCCCC-CCCEEEEEEEecC-----------CeEEEEe
Confidence            344565 478899998876 99999999975 8999999999876554 5799999999986           5999999


Q ss_pred             CCCCCCCCCcEEEEEeCC----CccCccccceecccee
Q psy1664         464 SFNTNWGENGLFRIVRGQ----NECGIEADITAGLPKI  497 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~  497 (524)
                      |||++||++|||||+|+.    |.|||++.+.  +|.+
T Consensus       176 SWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~--~p~~  211 (212)
T 2cio_A          176 SWGTGWGENGYIRIKRGTGNSYGVCGLYTSSF--YPVK  211 (212)
T ss_dssp             SBCTTSTBTTEEEEECSSSCTTCGGGTTSCCE--EEEC
T ss_pred             CCCCCcccCcEEEEEcCCCCCCCccCccccee--EEEe
Confidence            999999999999999996    8999999854  5654

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=99.93  E-value=1.1e-25  Score=217.44  Aligned_cols=103  Identities=28%  Similarity=0.603  Sum_probs=87.0

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEec-ccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~-~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .+..++ .+++.|+++|++ |||+++|++ ..+|++|++|||..++.. .++|||+|||||++..      +++||||||
T Consensus       112 ~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~c~~-~~~HaV~iVGyg~~~~------g~~yWivkN  183 (229)
T 1s4v_A          112 GHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGSCGT-ELDHGVAIVGYGTTID------GTKYWTVKN  183 (229)
T ss_dssp             EEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCCCCC-CCCEEEEEEEEEECTT------SCEEEEEEC
T ss_pred             eEEEeCCccHHHHHHHHhc-CCEEEEEEeCcHHHhhCCCcEECCCCCC-CCCeEEEEEEeccccC------CCCEEEEEe
Confidence            344555 377888888876 999999999 578999999999876544 4799999999998752      789999999


Q ss_pred             CCCCCCCCCcEEEEEeCC----CccCccccceeccceec
Q psy1664         464 SFNTNWGENGLFRIVRGQ----NECGIEADITAGLPKIG  498 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~~  498 (524)
                      |||++||++|||||+|+.    |.|||++.+  .+|.+.
T Consensus       184 SWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~--~~p~~~  220 (229)
T 1s4v_A          184 SWGPEWGEKGYIRMERGISDKEGLCGIAMEA--SYPIKK  220 (229)
T ss_dssp             SBCTTSTBTTEEEEECSCSSTTCGGGTTSSC--EEEECC
T ss_pred             CCCCCccCCcEEEEEcCCCCCCCcCcccccc--eeeEec
Confidence            999999999999999995    899999995  467654

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=99.92  E-value=6.6e-26  Score=218.47  Aligned_cols=101  Identities=22%  Similarity=0.567  Sum_probs=86.3

Q ss_pred             EEEcC-CCHHHHHHHHHhCCCEEEEEeccc-ccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcC
Q psy1664         387 AYSLP-ANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANS  464 (524)
Q Consensus       387 ~~~~~-~~~~~~~~~~~~~gPv~~~~~~~~-~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NS  464 (524)
                      +..++ .++++|+++|+ +|||+++|++.. +|++|++|||.+. +...++|||+|||||++.     ..+.+|||||||
T Consensus       118 ~~~~~~~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~~~-~~~~~~Hav~iVGyg~~~-----~~g~~ywivkNS  190 (224)
T 3f75_A          118 FKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFDAS-CGTDLDHGVLLVGYGTDK-----ESKKDFWIMKNS  190 (224)
T ss_dssp             EEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEECCC-CCCCCCEEEEEEEEEEET-----TTTEEEEEEECS
T ss_pred             EEEeCCChHHHHHHHHc-CCCEEEEEeccchhhhcCccceECCC-CCCccCeEEEEEEEeccc-----CCCCCEEEEECC
Confidence            34453 47889999998 999999999975 8999999999844 456689999999999872     018899999999


Q ss_pred             CCCCCCCCcEEEEEeCC---CccCccccceeccce
Q psy1664         465 FNTNWGENGLFRIVRGQ---NECGIEADITAGLPK  496 (524)
Q Consensus       465 WG~~WG~~Gy~~i~~g~---~~cgi~~~~~~~~p~  496 (524)
                      ||++||++|||||+|+.   |.|||++.++  +|.
T Consensus       191 WG~~WG~~Gy~~i~~~~~~~~~cgi~~~~~--~p~  223 (224)
T 3f75_A          191 WGTGWGRDGYMYMAMHKGEEGQCGLLLDAS--FPV  223 (224)
T ss_dssp             BCTTSTBTTEEEEESCSCTTCGGGTTSSCE--EEE
T ss_pred             cCcchhhCCEEEEEcCCCCCCcCcccCcee--eee
Confidence            99999999999999998   9999999965  664

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=99.92  E-value=1.1e-25  Score=220.96  Aligned_cols=103  Identities=25%  Similarity=0.564  Sum_probs=87.2

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .+..++ .+++.|+++|++ |||+++|+++ ++|++|++|||..++.. .++|+|+|||||++.+      |++||||||
T Consensus       117 ~y~~v~~~~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~sGVy~~~c~~-~~~HaV~IVGyg~~~~------G~~YWivkN  188 (262)
T 2fo5_A          117 GHQDVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFTGECGT-ELDHGVAVVGYGVAED------GKAYWTVKN  188 (262)
T ss_dssp             EEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCCCCC-CCCEEEEEEEEEECTT------SCEEEEEEC
T ss_pred             eEEEcCCchHHHHHHHHHh-CCEEEEEecChHHHhccCCceECCCCCC-cCCEEEEEEEEcccCC------CceEEEEEe
Confidence            344565 478889988877 9999999997 68999999999876554 4799999999998742      789999999


Q ss_pred             CCCCCCCCCcEEEEEeCCC----ccCccccceeccceec
Q psy1664         464 SFNTNWGENGLFRIVRGQN----ECGIEADITAGLPKIG  498 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~~----~cgi~~~~~~~~p~~~  498 (524)
                      |||++||++|||||+|+.|    .|||++.+.  +|.+.
T Consensus       189 SWG~~WGe~GY~ri~r~~n~~~~~CgI~~~~~--~p~~~  225 (262)
T 2fo5_A          189 SWGPSWGEQGYIRVEKDSGASGGLCGIAMEAS--YPVKT  225 (262)
T ss_dssp             SBCTTSTBTTEEEEESSCSCTTCGGGTTTSCE--EEECC
T ss_pred             CCCCCCCCCeEEEEEcCCCCCCCccceeeeee--EEEec
Confidence            9999999999999999974    499999854  67654

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=99.92  E-value=2.9e-25  Score=211.19  Aligned_cols=97  Identities=27%  Similarity=0.548  Sum_probs=83.0

Q ss_pred             EEEEcC-CCHHHHHHHHHhCCCEEEEEeccc-ccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         386 IAYSLP-ANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~gPv~~~~~~~~-~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      .+..++ .++++||++|++ |||+++|+++. +|++|++|||..++.. .++|||+|||||+           +||||||
T Consensus       107 ~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~-~~~HaV~iVGyg~-----------~yWivkN  173 (208)
T 1o0e_A          107 GYNGVPFCNEXALKQAVAV-QPSTVAIDASSAQFQQYSSGIFSGPCGT-KLNHGVTIVGYQA-----------NYWIVRN  173 (208)
T ss_dssp             EEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCCCCS-CCCEEEEEEEECS-----------SEEEEEC
T ss_pred             eEEEeCCCCHHHHHHHHHh-CCEEEEEEccCcccccccCceECCCCCC-cCCEEEEEEEeCC-----------CeEEEEc
Confidence            344555 478899998876 99999999975 8999999999876554 5799999999976           5999999


Q ss_pred             CCCCCCCCCcEEEEEeCC--CccCccccceecccee
Q psy1664         464 SFNTNWGENGLFRIVRGQ--NECGIEADITAGLPKI  497 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~--~~cgi~~~~~~~~p~~  497 (524)
                      |||++||++|||||+|+.  |.|||++.++  +|.+
T Consensus       174 SWG~~WGe~Gy~~i~~~~~~~~Cgi~~~~~--~p~~  207 (208)
T 1o0e_A          174 SWGRYWGEKGYIRMLRVGGCGLCGIARLPY--YPTK  207 (208)
T ss_dssp             SBCTTSTBTTEEEEECCSTTCGGGTTSSCE--EEEC
T ss_pred             CCCCcccCCcEEEEEcCCCCCcCCCcccce--eeec
Confidence            999999999999999997  8999999855  5553

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=99.92  E-value=1.2e-25  Score=218.73  Aligned_cols=103  Identities=26%  Similarity=0.572  Sum_probs=85.3

Q ss_pred             EEEEcCC-CHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCCccCeeEEEeeecCCCC---CCCccCCccEEEE
Q psy1664         386 IAYSLPA-NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPL---GEGTSSVVKYWLV  461 (524)
Q Consensus       386 ~~~~~~~-~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~---~~~~~~~~~ywiv  461 (524)
                      .+..++. ++++||++|   |||+++|+++.+|++|++|||...+... ++|||+|||||++..   ......+.+||||
T Consensus       127 ~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWiv  202 (241)
T 2oul_A          127 NYLSVPDNKLKEALRFL---GPISISVAVSDDFAFYKEGIFDGECGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKHYYYII  202 (241)
T ss_dssp             EEEECCTTCHHHHHHHT---CCEEEEECBCHHHHTCCSSBCCSCBCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEE
T ss_pred             eEEEeCCCCHHHHHHhh---CCEEEEEecCcchhhcCCcEEcCcCCCC-CCEEEEEEEeccccccccccccCCCCCEEEE
Confidence            3445654 789999999   9999999998899999999998755444 899999999998641   1112237789999


Q ss_pred             EcCCCCCCCCCcEEEEEeCCCc----cCcccccee
Q psy1664         462 ANSFNTNWGENGLFRIVRGQNE----CGIEADITA  492 (524)
Q Consensus       462 ~NSWG~~WG~~Gy~~i~~g~~~----cgi~~~~~~  492 (524)
                      |||||++||++|||||+|+.|.    |||++.+++
T Consensus       203 kNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~  237 (241)
T 2oul_A          203 KNSWGQQWGERGFINIETDESGLMRKCGLGTDAFI  237 (241)
T ss_dssp             ECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEE
T ss_pred             EeCCCCCcccCCEEEEEcCCCCCCCcCCccceEEE
Confidence            9999999999999999999877    999999663

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=99.92  E-value=1.7e-25  Score=218.03  Aligned_cols=103  Identities=25%  Similarity=0.600  Sum_probs=85.4

Q ss_pred             EEEEcCC-CHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCCccCeeEEEeeecCCCC---CCCccCCccEEEE
Q psy1664         386 IAYSLPA-NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPL---GEGTSSVVKYWLV  461 (524)
Q Consensus       386 ~~~~~~~-~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~---~~~~~~~~~ywiv  461 (524)
                      .++.++. ++++||++|   |||+++|+++.+|++|++|||...+... ++|||+|||||++..   ......+.+||||
T Consensus       129 ~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWiv  204 (243)
T 3bwk_A          129 SYVSIPDDKFKEALRYL---GPISISIAASDDFAFYRGGFYDGECGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYII  204 (243)
T ss_dssp             EEEECCTTCHHHHHHHT---CCEEEEECCCHHHHTCCSSSCCCCCCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEE
T ss_pred             eEEEeCCCCHHHHHHhh---CCEEEEEecChhHHhcCCceecCCCCCc-CCeEEEEEEecCccccccccccCCCCCEEEE
Confidence            4445654 789999999   9999999998889999999998755444 899999999998631   1112237789999


Q ss_pred             EcCCCCCCCCCcEEEEEeCCCc----cCcccccee
Q psy1664         462 ANSFNTNWGENGLFRIVRGQNE----CGIEADITA  492 (524)
Q Consensus       462 ~NSWG~~WG~~Gy~~i~~g~~~----cgi~~~~~~  492 (524)
                      |||||++||++|||||+|+.|.    |||++.+++
T Consensus       205 kNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~  239 (243)
T 3bwk_A          205 KNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYV  239 (243)
T ss_dssp             ECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEE
T ss_pred             EeCCCCCcCCCcEEEEEcCCCCCCCcCCccceEEE
Confidence            9999999999999999999877    999999663

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=99.92  E-value=3.6e-25  Score=211.50  Aligned_cols=97  Identities=32%  Similarity=0.626  Sum_probs=83.7

Q ss_pred             EEEcC-CCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcC
Q psy1664         387 AYSLP-ANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANS  464 (524)
Q Consensus       387 ~~~~~-~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NS  464 (524)
                      +..++ .++++||++|++ |||+++|+++ ++|++|++|||..++.. .++|||+|||||+           +|||||||
T Consensus       110 y~~v~~~~~~~i~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~~~~~~-~~~HaV~iVGyg~-----------~yWivkNS  176 (214)
T 2bdz_A          110 YKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEGPCGT-NTDHAVTAVGYGK-----------TYLLLKNS  176 (214)
T ss_dssp             EEEECSSBHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCSCCS-CCCEEEEEEEECS-----------SEEEEECS
T ss_pred             EEEeCCCcHHHHHHHHHh-CCEEEEEeeChhHhhcccCceecCCCCC-CCCeEEEEEEcCC-----------CeEEEEeC
Confidence            33454 478999999987 9999999997 68999999999886554 5899999999976           59999999


Q ss_pred             CCCCCCCCcEEEEEeCC----CccCccccceeccceec
Q psy1664         465 FNTNWGENGLFRIVRGQ----NECGIEADITAGLPKIG  498 (524)
Q Consensus       465 WG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~~  498 (524)
                      ||++||++|||||+|+.    |.|||++.+.  +|.+.
T Consensus       177 WG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~--~p~~~  212 (214)
T 2bdz_A          177 WGPNWGEKGYIRIKRASGRSKGTCGVYTSSF--FPIKG  212 (214)
T ss_dssp             BCTTSTBTTEEEEECCCSBSSCGGGTTSCEE--EEECC
T ss_pred             CCCCcccCCEEEEEcCCCCCCCcccccccce--EEEec
Confidence            99999999999999986    8999999954  67653

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=99.91  E-value=1.6e-24  Score=220.97  Aligned_cols=94  Identities=32%  Similarity=0.597  Sum_probs=76.7

Q ss_pred             EcCCCHHHHHHHHHhCCCEEEEEec-ccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCC
Q psy1664         389 SLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT  467 (524)
Q Consensus       389 ~~~~~~~~~~~~~~~~gPv~~~~~~-~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~  467 (524)
                      .++...+.++.+++.+|||+|+|++ ..+|++|++|||..+++. .++|||+|||||+           +|||||||||+
T Consensus       263 ~~~~~~e~~l~~~v~~gPvsvai~a~~~~F~~Y~sGVy~~~~~~-~lnHaV~iVGyG~-----------~YWIVKNSWGt  330 (363)
T 3tnx_A          263 QVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGN-KVDHAVAAVGYGP-----------NYILIRNSWGT  330 (363)
T ss_dssp             EECSSCHHHHHHHHTTSCEEEEECCCSHHHHTEEEEEECCCCCS-CCCEEEEEEEEET-----------TEEEEECSBCT
T ss_pred             EcchhhHHHHHHHHHcCCcEEEEEecchhhhCCCCCEECCCCCC-CCCeEEEEEEcCC-----------CcEEEEeCCCC
Confidence            3443334444555567999999986 568999999999887655 4799999999964           49999999999


Q ss_pred             CCCCCcEEEEEeCCC----ccCccccceeccce
Q psy1664         468 NWGENGLFRIVRGQN----ECGIEADITAGLPK  496 (524)
Q Consensus       468 ~WG~~Gy~~i~~g~~----~cgi~~~~~~~~p~  496 (524)
                      +||++|||||+||.|    .|||++.++  +|+
T Consensus       331 ~WGe~GY~rI~Rg~~~~~~~CGI~~~a~--yPi  361 (363)
T 3tnx_A          331 GWGENGYIRIKRGTGNSYGVCGLYTSSF--YPV  361 (363)
T ss_dssp             TSTBTTEEEEECCSCCSSCGGGTTSCEE--EEE
T ss_pred             ccccCcEEEEEcCCCCCCCcCCccceee--ecc
Confidence            999999999999974    499999955  665

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=99.91  E-value=6.2e-25  Score=217.77  Aligned_cols=84  Identities=31%  Similarity=0.697  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccc
Q psy1664         250 ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE  329 (524)
Q Consensus       250 ~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe  329 (524)
                      .++++||++|+++|||+|+|+++++|++|++|||..+.+...++|||+|||||++       ++++|||||||||++|||
T Consensus       171 ~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~iVGyg~~-------~g~~YWivkNSWG~~WGe  243 (277)
T 1deu_A          171 SGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGIS-------DGTEYWIVRNSWGEPWGE  243 (277)
T ss_dssp             CSHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEECBCCSCCCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTB
T ss_pred             CCHHHHHHHHHHcCCEEEEEecccccccCcCcEECCCCCCCcCCeEEEEEEeccc-------CCccEEEEEeCCCCccCC
Confidence            3688999999999999999999999999999999988777779999999999986       478999999999999999


Q ss_pred             cCccccccccC
Q psy1664         330 NGLFRIGCRPY  340 (524)
Q Consensus       330 ~Gy~ri~~~~~  340 (524)
                      +|||||+++.+
T Consensus       244 ~GY~~i~rg~n  254 (277)
T 1deu_A          244 RGWLRIVTSTY  254 (277)
T ss_dssp             TTEEEEECTTH
T ss_pred             CcEEEEEcCCC
Confidence            99999999865

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=99.90  E-value=2.6e-24  Score=212.60  Aligned_cols=102  Identities=25%  Similarity=0.556  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhCCCEEEEEeccccccccc-ccEE-eCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCC
Q psy1664         394 EETIMREIFRHGPVEGSMTIYADMILYK-TGIY-KHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE  471 (524)
Q Consensus       394 ~~~~~~~~~~~gPv~~~~~~~~~f~~y~-~gi~-~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~  471 (524)
                      +++||++|+++|||+++|++. +|+.|+ +|++ ...+....++|||+|||||++...+|  .+++|||||||||++||+
T Consensus       157 ~~~ik~~i~~~GPV~v~i~~~-~f~~y~~~g~~~~~~c~~~~~~HaV~iVGyG~~~~~~g--~~~~YWivkNSWG~~WGe  233 (265)
T 2wbf_X          157 VKIIKTEVMNKGSVIAYIKAE-NVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEG--EKKSYWIVRNSWGPYWGD  233 (265)
T ss_dssp             HHHHHHHHHHHSCEEEEECGG-GGCSGGGGSSSEECCCCCSCCCEEEEEEEEEEEECTTS--CEEEEEEEECSBCTTSTB
T ss_pred             HHHHHHHHHhcCCEEEEEEcc-cccccccCCcEEcCCCCCCcCCEEEEEEEEeCCcccCC--CcCCEEEEEcCCCCccCC
Confidence            478999999999999999985 587775 4533 23445456899999999998511001  136899999999999999


Q ss_pred             CcEEEEEe-CCCccCccccceeccceec
Q psy1664         472 NGLFRIVR-GQNECGIEADITAGLPKIG  498 (524)
Q Consensus       472 ~Gy~~i~~-g~~~cgi~~~~~~~~p~~~  498 (524)
                      +|||||+| |.|.|||+..+.+++|.+.
T Consensus       234 ~GY~ri~~~g~n~Cgi~~~~~~~~~~~~  261 (265)
T 2wbf_X          234 EGYFKVDMYGPTHCHFNFIHSVVIFNVD  261 (265)
T ss_dssp             TTEEEEESSCCTTCSSCSCCEEEEECEE
T ss_pred             CCEEEEEecCCCccCcceeEEEEecccc
Confidence            99999986 6799999999988888754

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=99.89  E-value=9.6e-24  Score=220.69  Aligned_cols=94  Identities=37%  Similarity=0.745  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCC------CCCCcEEEEEEeccCCCCCCCccceeEEEEeCCC
Q psy1664         250 ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGG------PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSF  323 (524)
Q Consensus       250 ~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~------~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSW  323 (524)
                      .++++||++|+++|||+|+|+++++|++|++|||..+.+.      ..++|||+|||||++.     .+|++||||||||
T Consensus       331 ~~e~~ik~al~~~GPVsvai~a~~~F~~Y~sGVy~~~~~~~~~~~~~~~~HaV~iVGyG~~~-----~~G~~YWIVkNSW  405 (441)
T 3pdf_A          331 CNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDS-----ASGMDYWIVKNSW  405 (441)
T ss_dssp             CCHHHHHHHHHHHCCEEEEECCCGGGGGCCSSEECCC---CCCCCCCCCCEEEEEEEEEECT-----TTCCEEEEEECSB
T ss_pred             CcHHHHHHHHHHCCCeEEEEEecccccccCCceEecCCCCcccCCCCcCCeEEEEEEecccC-----CCCceEEEEEcCC
Confidence            5789999999999999999999999999999999887653      2589999999999862     2578999999999


Q ss_pred             CCcccccCccccccccCccCCcCcCCc
Q psy1664         324 NTNWGENGLFRIGCRPYEIPCERYMNG  350 (524)
Q Consensus       324 G~~WGe~Gy~ri~~~~~~~~c~~~~~~  350 (524)
                      |++|||+|||||+|+..  .|++.+.+
T Consensus       406 G~~WGe~GYfri~rg~n--~CGI~s~~  430 (441)
T 3pdf_A          406 GTGWGENGYFRIRRGTD--ECAIESIA  430 (441)
T ss_dssp             CTTSTBTTEEEEECSSC--GGGTTSCC
T ss_pred             CCCcCCCeEEEEEcCCC--ccCCCCce
Confidence            99999999999999864  68887644

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=99.84  E-value=9.1e-22  Score=196.67  Aligned_cols=88  Identities=15%  Similarity=0.212  Sum_probs=77.7

Q ss_pred             eeEEEEcCCCHHHHHHHHHhCCCEEEEEecccccccccc--cEEeCCCCCC--ccCeeEEEeeecCCCCCCCccCCccEE
Q psy1664         384 GRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT--GIYKHVAGGP--LGEHAIRIIGWGQEPLGEGTSSVVKYW  459 (524)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~--gi~~~~~~~~--~~~H~v~ivG~g~~~~~~~~~~~~~yw  459 (524)
                      ...++.++.++++|+++|+++|||+++|+++++|+.|++  |||..+++..  .++|||+|||||+         +++||
T Consensus       181 i~~y~~v~~~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~Gi~~~~~~~~~~~~~Hav~iVGy~~---------~~~yw  251 (291)
T 3ois_A          181 ITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYDD---------EIRHF  251 (291)
T ss_dssp             CCEEEECCSCHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCCSBCCCCCTTSCEEEEEEEEEEEEET---------TTTEE
T ss_pred             eccEEEcCcCHHHHHHHHHcCCCEEEEEEeccchhhcCCCCeEEeCCCCCCCCcCCeEEEEEEEeC---------CCCEE
Confidence            445667878999999999999999999999989999998  9998775432  3699999999973         56899


Q ss_pred             EEEcCCCCCCCCCcEEEEEeC
Q psy1664         460 LVANSFNTNWGENGLFRIVRG  480 (524)
Q Consensus       460 iv~NSWG~~WG~~Gy~~i~~g  480 (524)
                      |||||||++||++|||||+|+
T Consensus       252 ivkNSWG~~WG~~Gy~~i~~~  272 (291)
T 3ois_A          252 RIRNSWGNNVGEDGYFWMPYE  272 (291)
T ss_dssp             EEECSBCTTSTBTTEEEEEHH
T ss_pred             EEEeCCCCCCCCCcEEEEEHH
Confidence            999999999999999999997

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=99.70  E-value=1.9e-17  Score=172.29  Aligned_cols=88  Identities=17%  Similarity=0.199  Sum_probs=73.4

Q ss_pred             EEEEcCCCH--HHHHHHHHhCCCEEEEEecccccccccccEEeCCC--------------------CCCccCeeEEEeee
Q psy1664         386 IAYSLPANE--ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA--------------------GGPLGEHAIRIIGW  443 (524)
Q Consensus       386 ~~~~~~~~~--~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~--------------------~~~~~~H~v~ivG~  443 (524)
                      .+++++.++  ..++.+|.+.|||+++++|.. |++|++|||...+                    +....+|||+||||
T Consensus       302 ~y~Nvp~d~l~~~~~~aL~~g~PV~~~~Dv~~-~~~~~~GI~~~~~~~~~~fg~~~~m~KaeRl~~~~s~~~HAmlivGy  380 (457)
T 2e01_A          302 IYLNVDNETLSKLVVKRLQNNKAVFFGSHTPK-FMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTAAMLITGC  380 (457)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCCEEEEECTTT-TEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEE
T ss_pred             eEEEcCHHHHHHHHHHHHHhCCCEEEEEEcCH-hHcccCceecccccchhhcCcccccCHHHhhccCCCCCCeEEEEEEE
Confidence            356777664  566788889999999999975 8889999997654                    23457999999999


Q ss_pred             cCCCCCCCccCCc--cEEEEEcCCCCCCCCCcEEEEEeC
Q psy1664         444 GQEPLGEGTSSVV--KYWLVANSFNTNWGENGLFRIVRG  480 (524)
Q Consensus       444 g~~~~~~~~~~~~--~ywiv~NSWG~~WG~~Gy~~i~~g  480 (524)
                      |.+.+      |+  +|||||||||+.||++|||+|+++
T Consensus       381 g~d~~------G~~p~yW~VkNSWG~~wG~~GY~~ms~~  413 (457)
T 2e01_A          381 HVDET------SKLPLRYRVENSWGKDSGKDGLYVMTQK  413 (457)
T ss_dssp             EECTT------TCCEEEEEEECSSCTTSTBTTEEEEEHH
T ss_pred             EeccC------CCccCEEEEEeCccCCcCCCceEEeehh
Confidence            98632      76  899999999999999999999996

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=99.68  E-value=3.3e-17  Score=170.24  Aligned_cols=87  Identities=16%  Similarity=0.140  Sum_probs=71.0

Q ss_pred             EEEcCCCH--HHHHHHHHhCCCEEEEEecccccccccccEEeCCCC----------------------CCccCeeEEEee
Q psy1664         387 AYSLPANE--ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAG----------------------GPLGEHAIRIIG  442 (524)
Q Consensus       387 ~~~~~~~~--~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~----------------------~~~~~H~v~ivG  442 (524)
                      +++++.++  +.++.+|.+.|||+++++|.. +.++++|||...++                      ....+|||+|||
T Consensus       299 y~Nvp~~~l~~~~~~al~~g~PV~~~~Dv~~-~~~~k~GI~~~~~~~~~~~fg~~~~~m~KaeRl~~~~s~~~HAmlivG  377 (453)
T 2cb5_A          299 YNNQPIDFLKKMVAASIKDGEAVWFGCDVGK-HFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTA  377 (453)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEECTTT-TEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEE
T ss_pred             ccccCHHHHHHHHHHHHHcCCCEEEEEEeCh-hhccCCcEEcCccccchhhcCccccccCHHHHhhccCCCCCeEEEEEE
Confidence            45666554  456688899999999999975 55669999986553                      235799999999


Q ss_pred             ec--CCCCCCCccCCc-cEEEEEcCCCCCCCCCcEEEEEeC
Q psy1664         443 WG--QEPLGEGTSSVV-KYWLVANSFNTNWGENGLFRIVRG  480 (524)
Q Consensus       443 ~g--~~~~~~~~~~~~-~ywiv~NSWG~~WG~~Gy~~i~~g  480 (524)
                      ||  .+.+      |. +|||||||||+.||++|||+|+|+
T Consensus       378 yg~~~d~~------G~~~yWiVkNSWG~~wG~~GY~~ms~~  412 (453)
T 2cb5_A          378 VSEKDDQD------GAFTKWRVENSWGEDHGHKGYLCMTDE  412 (453)
T ss_dssp             EEECTTSC------SCEEEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             eccccccC------CCccEEEEEcCcCCCcCcCceEEechh
Confidence            99  6531      66 899999999999999999999986

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}

Probab=99.43  E-value=1e-13  Score=110.54  Aligned_cols=73  Identities=14%  Similarity=0.082  Sum_probs=63.8

Q ss_pred             CCCcHHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCC--CCccccccccccccchHHHHHHHhCCC
Q psy1664           1 MGKSTADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLP--KLPFYGAEKNALSKLTLSELEMRMGVH   74 (524)
Q Consensus         1 ~~~st~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~--~~~~~~~g~N~fsd~t~eE~~~~~~~~   74 (524)
                      |..+..++|++|+.+|+|.|.+.+|...| .+|.+|++.|++||++.  ...+|++|+|+|+|||.+||..++|..
T Consensus         2 ~~l~~~~~f~~~k~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlT~eEf~~~~g~~   76 (80)
T 2l95_A            2 MSLVSDEEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEFAQRSGKK   76 (80)
T ss_dssp             CCSSCHHHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHTTGGGTSCCCCCCCCGGGTSSHHHHHHHHTSC
T ss_pred             ccchHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCeEecCcccccCCHHHHHHHhCCC
Confidence            78888999999999999999988888889 99999999999999863  136899999999999999993355543

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}

Probab=99.36  E-value=3.4e-13  Score=112.55  Aligned_cols=67  Identities=12%  Similarity=0.099  Sum_probs=61.6

Q ss_pred             cHHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHHHHHHhC
Q psy1664           4 STADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMG   72 (524)
Q Consensus         4 st~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~~~~   72 (524)
                      +....|++|+++|+|.|.+.+|...|+.+|.+|++.|++||++.  .+|++|+|+|+|||.+||++++.
T Consensus        20 ~~~~~F~~wk~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~--~sy~lglN~FaDLT~eEF~~~~l   86 (106)
T 3f75_P           20 HFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQG--YSYSLKMNHFGDLSRDEFRRKYL   86 (106)
T ss_dssp             HHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTSC--CSEEECCCTTTTCCHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCcccccCCHHHHHHHHc
Confidence            35678999999999999998999999999999999999999884  79999999999999999998654

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.28  E-value=4.2e-12  Score=129.30  Aligned_cols=87  Identities=21%  Similarity=0.310  Sum_probs=63.1

Q ss_pred             EEEcCCCH--HHHHHHHHhCCCEEEEEecccccccccccEEeCCC-----------------------------------
Q psy1664         387 AYSLPANE--ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA-----------------------------------  429 (524)
Q Consensus       387 ~~~~~~~~--~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~-----------------------------------  429 (524)
                      +++++-++  ..+..+|...-||..+-+|.+.+.. +.||...+.                                   
T Consensus       222 ~~Nvp~d~l~~~~~~~Lk~G~~V~fg~DV~~~~f~-~~Gi~~~~~~~~~~~~~g~~~~~~~~~~kaer~~~~~~~~e~~~  300 (383)
T 3pw3_A          222 SYNLPLDEFMEVFDNAINTGYTIAWGSDVSESGFT-RDGVAVMPDDEKVQELSGSDMAHWLKLKPEEKKLNTKPQPQKWC  300 (383)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEEECCSTTBC-TTSEECCBCHHHHHHHSSCCHHHHHTSCHHHHCTTTSCCCBCCC
T ss_pred             cCCcCHHHHHHHHHHHHHcCCcEEEEcccCccccC-CCceeeCcchhhHHHhcCcchhhhccCCHHHhhhccCCCcccCC
Confidence            56776543  3333444444599999999764433 888873221                                   


Q ss_pred             -----------CCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCCCcEEEEEeC
Q psy1664         430 -----------GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG  480 (524)
Q Consensus       430 -----------~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~g  480 (524)
                                 .....+|||+|||||.+.+      |++|||||||||+.||++|||+|++.
T Consensus       301 tk~~R~~~~d~~~t~~~Ha~~ivG~~~d~~------g~~yw~vkNSWg~~~g~~Gy~~m~~~  356 (383)
T 3pw3_A          301 TQAERQLAYDNYETTDDHGMQIYGIAKDQE------GNEYYMVKNSWGTNSKYNGIWYASKA  356 (383)
T ss_dssp             CHHHHHHHHHTTSSCCEEEEEEEEEEECTT------CCEEEEEECSBCSCSTTTTEEEEEHH
T ss_pred             CHHHHHHHhhhccCcCCeEEEEEEEEEcCC------CceEEEEEeCCCCCCCcCCeEEecHH
Confidence                       0123589999999997542      77999999999999999999999874

>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A

Probab=97.08  E-value=0.0059  Score=54.30  Aligned_cols=127  Identities=13%  Similarity=0.069  Sum_probs=87.7

Q ss_pred             CCCCCccHHHHHHHHHHHHHHH--------HHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHHHHHHhCCccCCcc
Q psy1664         118 DQGSCGSGWALGAVEAMSDRVC--------IASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTY  189 (524)
Q Consensus       118 dQg~CGsCwAfA~~~~le~~~~--------i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y  189 (524)
                      .||.-+=|-+|+.++.|-....        |...  ..+.+|+|+|.++         |..+...++|++..|...    
T Consensus        26 TQg~~~WCa~Y~~aAilN~~~nt~~~nA~~iMr~--~yPN~s~~~l~~t---------~~~~~q~Iky~~s~G~~~----   90 (183)
T 1pxv_A           26 QQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRT--LYPEVSEQDLPNC---------ATFPNQMIEYGKSQGRDI----   90 (183)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHTCSCCCHHHHHHH--HSTTSCTTTGGGC---------CBCHHHHHHHHHHTTCCC----
T ss_pred             ccCcCchHHHHHHHHHHHhhhccCcCCHHHHHHH--HCCCCChhHHhhc---------CCCHHHHHHHHHHcCcCh----
Confidence            4888899999999988875541        1110  2477888888774         456899999998878542    


Q ss_pred             CCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEE
Q psy1664         190 ASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM  269 (524)
Q Consensus       190 ~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i  269 (524)
                             -|.                                               .-..+-+++++.|-++.||.+..
T Consensus        91 -------~~~-----------------------------------------------nr~ls~neV~~~i~~Nk~I~v~~  116 (183)
T 1pxv_A           91 -------HYQ-----------------------------------------------EGVPSYNQVDQLTKDNVGIMILA  116 (183)
T ss_dssp             -------EEE-----------------------------------------------ESCCCHHHHHHHHHTTCCEEEEE
T ss_pred             -------hHh-----------------------------------------------cCCCCHHHHHHHHhcCCcEEEEc
Confidence                   111                                               11235688999999999998776


Q ss_pred             EecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccccc
Q psy1664         270 TIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIG  336 (524)
Q Consensus       270 ~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~  336 (524)
                      .-.          +. .......+||++||||-.-       ++.++.+|=|=|-.     |++-++
T Consensus       117 ~~v----------~e-~~~~~~~gHA~av~Gya~~-------~~~~~y~~WNPW~~-----~~~~~~  160 (183)
T 1pxv_A          117 QSV----------SQ-NPNDPHLGHALAVVGNAKI-------NDQEKLIYWNPWDT-----ELSIQD  160 (183)
T ss_dssp             ECC----------CS-STTSCCCEEEEEEEEEEEE-------TTEEEEEEECTTCS-----SCEEEE
T ss_pred             ccc----------cc-CCCCccCceeEEEEeeeec-------CCCeEEEEeCCccC-----CcEeec
Confidence            631          11 1122356899999999976       35789999888753     555554

>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1

Probab=96.73  E-value=0.03  Score=49.70  Aligned_cols=120  Identities=11%  Similarity=0.028  Sum_probs=83.5

Q ss_pred             CCCCCccHHHHHHHHHHHHHHH--------HHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHHHHHHhCCccCCcc
Q psy1664         118 DQGSCGSGWALGAVEAMSDRVC--------IASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTY  189 (524)
Q Consensus       118 dQg~CGsCwAfA~~~~le~~~~--------i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y  189 (524)
                      .||.=+=|-+|+.++.|-....        |...  ..+.+|+++|..+         |..+...++|++..|...    
T Consensus        17 TQg~~pWCa~Ya~aailN~~~~~~~~~A~~imr~--~yPn~S~~~l~~~---------~~t~~e~iky~~s~g~~~----   81 (174)
T 1cv8_A           17 TQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRF--LHPNLQGQQFQFT---------GLTPREMIYFGQTQGRSP----   81 (174)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHH--HCSSCCHHHHHHC---------CCCHHHHHHHHHHTTCCC----
T ss_pred             ccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHH--HCCCCCHHHHhhc---------CCCHHHHHHHHHHcCCCh----
Confidence            4888899999999988875541        1111  2478999999954         346889999998887521    


Q ss_pred             CCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEE
Q psy1664         190 ASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM  269 (524)
Q Consensus       190 ~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i  269 (524)
                             -+.                                               .-..+-+++++++.++.|+.+..
T Consensus        82 -------~~~-----------------------------------------------n~~ls~~eV~~~~~~nk~i~i~~  107 (174)
T 1cv8_A           82 -------QLL-----------------------------------------------NRMTTYNEVDNLTKNNKGIAILG  107 (174)
T ss_dssp             -------EEE-----------------------------------------------SSCCCHHHHHHHHHTTCCEEEEE
T ss_pred             -------hhh-----------------------------------------------cCCCCHHHHHHHHhcCCceEEEc
Confidence                   111                                               01124678999999999998777


Q ss_pred             EecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCC
Q psy1664         270 TIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN  324 (524)
Q Consensus       270 ~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG  324 (524)
                      +-.+            .......+||++||||-.-.      ++.+|.++=|=|-
T Consensus       108 ~~ve------------~~~~~~~gHAlav~Gy~~~~------ng~~~y~~WNPW~  144 (174)
T 1cv8_A          108 SRVE------------SRNGMHAGHAMAVVGNAKLN------NGQEVIIIWNPWD  144 (174)
T ss_dssp             EESS------------CBTTBCCEEEEEEEEEEEET------TSCEEEEEECTTC
T ss_pred             cccc------------CCCCCCCceeEEEEeeeeec------CCceEEEEeCCcc
Confidence            6421            01123568999999999853      4578999988774

>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4

Probab=96.41  E-value=0.023  Score=55.84  Aligned_cols=120  Identities=13%  Similarity=0.084  Sum_probs=83.1

Q ss_pred             CCCCCCccHHHHHHHHHHHHHHH--------HHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHHHHHHhCCccCCc
Q psy1664         117 RDQGSCGSGWALGAVEAMSDRVC--------IASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGT  188 (524)
Q Consensus       117 kdQg~CGsCwAfA~~~~le~~~~--------i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~  188 (524)
                      ..||.-+=|-+||.++.|-....        |...  ..+.+|+++|.++         |..+...++|++..|...   
T Consensus       201 ETQg~~pWCa~Ya~aailN~~~~t~~~nA~~iMr~--~yPN~S~~~l~~t---------s~~~~q~Iky~qsyG~~~---  266 (367)
T 1x9y_A          201 EQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRT--LYPEVSEQDLPNC---------ATFPNQMIEYGKSQGRDI---  266 (367)
T ss_dssp             CCCSSSSCHHHHHHHHHHHHHTTCSCCCHHHHHHH--HCTTSCTTTGGGC---------CCCHHHHHHHHHHTTEEE---
T ss_pred             eccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHH--HCCCCChhHHhhc---------CCCHHHHHHHHHHhCcch---
Confidence            34888899999999988765431        1110  2467788888774         457899999998778542   


Q ss_pred             cCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEE
Q psy1664         189 YASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGS  268 (524)
Q Consensus       189 y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~  268 (524)
                              -+.                                               .-..+-+++++.+-.+.||.|.
T Consensus       267 --------~~~-----------------------------------------------n~~ls~deVk~~id~Nk~I~v~  291 (367)
T 1x9y_A          267 --------HYQ-----------------------------------------------EGVPSYNQVDQLTKDNVGIMIL  291 (367)
T ss_dssp             --------EEE-----------------------------------------------ESCCCHHHHHHHHHTTCCEEEE
T ss_pred             --------hhh-----------------------------------------------cCCCCHHHHHHHHhcCCcEEEE
Confidence                    111                                               1123467889999999999988


Q ss_pred             EEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCC
Q psy1664         269 MTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN  324 (524)
Q Consensus       269 i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG  324 (524)
                      +.-. +.            ......+||++||||...       ++.+|.++-|=|-
T Consensus       292 ~~~v~~~------------~n~~~~gHAlavvGyA~~-------~~~~~y~~WNPW~  329 (367)
T 1x9y_A          292 AQSVSQN------------PNDPHLGHALAVVGNAKI-------NDQEKLIYWNPWD  329 (367)
T ss_dssp             EEETTSC------------SSSCCCSEEEEEEEEEEE-------TTEEEEEEECTTC
T ss_pred             ccccccC------------CCCccCceeEEEEecccc-------CCCcEEEEecCcc
Confidence            8853 21            112356999999999654       3578999988774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	524
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	3e-63
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	7e-38
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	1e-34
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	1e-25
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	3e-31
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	2e-17
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	5e-31
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	2e-16
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	6e-31
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	5e-22
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	6e-29
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	5e-14
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	4e-28
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	3e-16
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	5e-28
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	9e-14
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	9e-28
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	2e-14
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	1e-27
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	3e-16
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	1e-26
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	3e-19
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	7e-26
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	3e-12
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	2e-25
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	2e-14
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	2e-25
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	5e-15
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	8e-25
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	4e-18
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	3e-24
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	6e-12
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	5e-24
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	4e-12
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	1e-23
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	2e-16
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	1e-21
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	1e-11
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	7e-19
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	1e-16

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  205 bits (521), Expect = 3e-63
 Identities = 126/241 (52%), Positives = 172/241 (71%), Gaps = 10/241 (4%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LP  FDAR  WP CPTI+EIRDQGSCGS WA GAVEA+SDR+CI +     V +S++DL+
Sbjct: 2   LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61

Query: 157 SCCKD-CGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIP-CERYMNGSHSSCQ 214
           +CC   CG+GC GG+  +AW +W   G+VSGG Y S  GCRPY IP CE ++NGS   C 
Sbjct: 62  TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 121

Query: 215 DNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD 274
               +TP+C + C+PGY  +Y+ D ++G  +YS+  +E+ IM EI+++GPVEG+ ++Y+D
Sbjct: 122 GEG-DTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 180

Query: 275 MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR 334
            +LYK+G+Y+HV G  +G HAIRI+GWG E       +   YWLVANS+NT+WG+NG F+
Sbjct: 181 FLLYKSGVYQHVTGEMMGGHAIRILGWGVE-------NGTPYWLVANSWNTDWGDNGFFK 233

Query: 335 I 335
           I
Sbjct: 234 I 234

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 7e-38
 Identities = 82/171 (47%), Positives = 122/171 (71%), Gaps = 9/171 (5%)

Query: 327 WGENGLFRIGCRPYEIP-CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGR 385
            G      +GCRPY IP CE ++NGSR  C     +TP+C + C+PGY  +Y+ D ++G 
Sbjct: 91  SGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEG-DTPKCSKICEPGYSPTYKQDKHYGY 149

Query: 386 IAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQ 445
            +YS+  +E+ IM EI+++GPVEG+ ++Y+D +LYK+G+Y+HV G  +G HAIRI+GWG 
Sbjct: 150 NSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV 209

Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGLPK 496
           E       +   YWLVANS+NT+WG+NG F+I+RGQ+ CGIE+++ AG+P+
Sbjct: 210 E-------NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 253

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score =  118 bits (296), Expect = 3e-31
 Identities = 48/239 (20%), Positives = 77/239 (32%), Gaps = 43/239 (17%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           +P   D    W     +  ++DQG CGS WA   + A+     I +     +  S  +LV
Sbjct: 2   VPASVD----WRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSL--SEQELV 55

Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
            C  D   GC GG    A+++    G ++       +         +           +N
Sbjct: 56  DCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHEN 115

Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI 276
            P   E                                +++ +             +D  
Sbjct: 116 VPENDENA------------------------------LLKAVANQPVSVAIDAGGSDFQ 145

Query: 277 LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            Y  G++    G  L  H + I+G+G    G       KYW V NS+   WGE G  R+
Sbjct: 146 FYSEGVFTGSCGTELD-HGVAIVGYGTTIDG------TKYWTVKNSWGPEWGEKGYIRM 197

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 79.6 bits (195), Expect = 2e-17
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 11/146 (7%)

Query: 355 CQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIY 414
               E N P                 ++          +E  +++ +             
Sbjct: 82  GITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGG 141

Query: 415 ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL 474
           +D   Y  G++    G  L  H + I+G+G    G       KYW V NS+   WGE G 
Sbjct: 142 SDFQFYSEGVFTGSCGTELD-HGVAIVGYGTTIDG------TKYWTVKNSWGPEWGEKGY 194

Query: 475 FRIVRG----QNECGIEADITAGLPK 496
            R+ RG    +  CGI  + +  + K
Sbjct: 195 IRMERGISDKEGLCGIAMEASYPIKK 220

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score =  118 bits (296), Expect = 5e-31
 Identities = 49/242 (20%), Positives = 84/242 (34%), Gaps = 41/242 (16%)

Query: 98  PEGFD-ARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
            E FD A  +W     +  ++DQ +CGS WA  ++ ++  +  I     + + LS  +LV
Sbjct: 14  EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRK--NKLITLSEQELV 71

Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
            C         G  +          G                        +  + S   N
Sbjct: 72  DCSFKNYGCNGGLINNAFEDMIELGG-------------------ICPDGDYPYVSDAPN 112

Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI 276
             N   C  K      +S  D+                +   +   GP+  S+ +  D  
Sbjct: 113 LCNIDRCTEKYGIKNYLSVPDN---------------KLKEALRFLGPISISVAVSDDFA 157

Query: 277 LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSV---VKYWLVANSFNTNWGENGLF 333
            YK GI+    G  L  HA+ ++G+G + +    +       Y+++ NS+   WGE G  
Sbjct: 158 FYKEGIFDGECGDQLN-HAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFI 216

Query: 334 RI 335
            I
Sbjct: 217 NI 218

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 76.9 bits (188), Expect = 2e-16
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 8/153 (5%)

Query: 344 CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFR 403
                               +           + +       I   L   +  +   +  
Sbjct: 83  GLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRF 142

Query: 404 HGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSV---VKYWL 460
            GP+  S+ +  D   YK GI+    G  L  HA+ ++G+G + +    +       Y++
Sbjct: 143 LGPISISVAVSDDFAFYKEGIFDGECGDQLN-HAVMLVGFGMKEIVNPLTKKGEKHYYYI 201

Query: 461 VANSFNTNWGENGLFRIVRG----QNECGIEAD 489
           + NS+   WGE G   I         +CG+  D
Sbjct: 202 IKNSWGQQWGERGFINIETDESGLMRKCGLGTD 234

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 6e-31
 Identities = 69/288 (23%), Positives = 106/288 (36%), Gaps = 33/288 (11%)

Query: 77  SKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQG---SCGSGWALGAVEA 133
           + L +   P   +   P  +LP+ +D R N          R+Q     CGS WA  +  A
Sbjct: 15  APLGRTTYPRPHEYLSP-ADLPKSWDWR-NVDGVNYASITRNQHIPQYCGSCWAHASTSA 72

Query: 134 MSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQ 193
           M+DR+ I  +G     L S   V  C + G+ C+GG     W Y    GI          
Sbjct: 73  MADRINIKRKGAWPSTLLSVQNVIDCGNAGS-CEGGNDLSVWDYAHQHGIPDETCN---- 127

Query: 194 GCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEE 253
                      Y        + N+  T    ++C    + +     ++G +     +  E
Sbjct: 128 ----------NYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSL-----SGRE 172

Query: 254 TIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSV 313
            +M EI+ +GP+   +     +  Y  GIY          H + + GW       G S  
Sbjct: 173 KMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGW-------GISDG 225

Query: 314 VKYWLVANSFNTNWGENGLFRIGCRPYEI-PCERYMNGSRSSCQANEP 360
            +YW+V NS+   WGE G  RI    Y+     RY       C   +P
Sbjct: 226 TEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDP 273

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (232), Expect = 5e-22
 Identities = 46/214 (21%), Positives = 69/214 (32%), Gaps = 21/214 (9%)

Query: 293 EHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCE-RYMNGS 351
              I I   G  P      SV       N+ +   G +         + IP E      +
Sbjct: 74  ADRINIKRKGAWPSTL--LSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQA 131

Query: 352 RSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM 411
           +            C    +     +Y     +    Y   +  E +M EI+ +GP+   +
Sbjct: 132 KDQECDKFNQCGTCNEFKECHAIRNYT---LWRVGDYGSLSGREKMMAEIYANGPISCGI 188

Query: 412 TIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE 471
                +  Y  GIY          H + + GWG        S   +YW+V NS+   WGE
Sbjct: 189 MATERLANYTGGIYAEYQDTTYINHVVSVAGWG-------ISDGTEYWIVRNSWGEPWGE 241

Query: 472 NGLFRIVRGQNE--------CGIEADITAGLPKI 497
            G  RIV    +          IE   T G P +
Sbjct: 242 RGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV 275

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score =  112 bits (279), Expect = 6e-29
 Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 46/239 (19%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LP+  D    W     +  +++QG CGS WA   V A+     I +     + LS   LV
Sbjct: 1   LPDSID----WRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVT--GDLISLSEQQLV 54

Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
            C     +GC+GG+   A+++ V  G ++       +G              S  S ++ 
Sbjct: 55  DCTTAN-HGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENV 113

Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI 276
             +                               NE+++ + +              D  
Sbjct: 114 PSH-------------------------------NEQSLQKAVANQPVSVTMDAAGRDFQ 142

Query: 277 LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           LY++GI+          HA+ ++G+G E           +W+V NS+  NWGE+G  R 
Sbjct: 143 LYRSGIFTGS-CNISANHALTVVGYGTEN-------DKDFWIVKNSWGKNWGESGYIRA 193

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 68.9 bits (167), Expect = 5e-14
 Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 22/184 (11%)

Query: 317 WLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVS 376
             + +    N G  G +      + +      +      +    +         P   + 
Sbjct: 51  QQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQ--DGICNSTVNAPVVSID 108

Query: 377 YEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEH 436
                           NE+++ + +              D  LY++GI+          H
Sbjct: 109 S--------YENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGS-CNISANH 159

Query: 437 AIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG----QNECGIEADITA 492
           A+ ++G+G E           +W+V NS+  NWGE+G  R  R       +CGI    + 
Sbjct: 160 ALTVVGYGTEN-------DKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 212

Query: 493 GLPK 496
            + K
Sbjct: 213 PVKK 216

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score =  109 bits (273), Expect = 4e-28
 Identities = 48/240 (20%), Positives = 81/240 (33%), Gaps = 45/240 (18%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LP   D    W     + +I+ QG CG  WA  A+  +     I +     + LS  +L+
Sbjct: 1   LPSYVD----WRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVT--GVLISLSEQELI 54

Query: 157 SCCKDCGN-GCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQD 215
            C +     GC GG+    +++ +  G ++                  +          +
Sbjct: 55  DCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYE 114

Query: 216 NEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADM 275
           N P                                N E  ++    + PV  ++    D 
Sbjct: 115 NVPY-------------------------------NNEWALQTAVTYQPVSVALDAAGDA 143

Query: 276 ILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
               +        G   +HA+ I+G+G E         + YW+V NS++T WGE G  RI
Sbjct: 144 FKQYSSGIFTGPCGTAIDHAVTIVGYGTE-------GGIDYWIVKNSWDTTWGEEGYMRI 196

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 75.8 bits (185), Expect = 3e-16
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 15/167 (8%)

Query: 324 NTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNF 383
           +    +N     G    +       NG  ++    E N P   +  +   D+  E  +  
Sbjct: 55  DCGRTQNTRGCNGGYITDGFQFIINNGGINT----EENYPYTAQDGECNVDLQNEKYVTI 110

Query: 384 GRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGW 443
                ++P N E  ++    + PV  ++    D     +        G   +HA+ I+G+
Sbjct: 111 -DTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGY 169

Query: 444 GQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVR---GQNECGIE 487
           G E         + YW+V NS++T WGE G  RI+R   G   CGI 
Sbjct: 170 GTE-------GGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIA 209

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 5e-28
 Identities = 45/239 (18%), Positives = 84/239 (35%), Gaps = 41/239 (17%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LP+  D    W     + E++ QGSCG+ WA  AV A+  ++ + +     +   +    
Sbjct: 1   LPDSVD----WREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDC 56

Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
           S  K    GC GGF   A++Y +    +        +          +Y   + S   + 
Sbjct: 57  STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTEL 116

Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI 276
                + +++                                  +     G    +    
Sbjct: 117 PYGREDVLKEAV------------------------------ANKGPVSVGVDARHPSFF 146

Query: 277 LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           LY++G+Y   +      H + ++G+G         +  +YWLV NS+  N+GE G  R+
Sbjct: 147 LYRSGVYYEPSCTQNVNHGVLVVGYGDL-------NGKEYWLVKNSWGHNFGEEGYIRM 198

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 9e-14
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 326 NWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGR 385
           N G NG F      Y I  +   + +    +A +       +          E       
Sbjct: 63  NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR-- 120

Query: 386 IAYSLPANEETIMREIFRHGPVE-GSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWG 444
                   E+ +   +   GPV  G    +    LY++G+Y   +      H + ++G+G
Sbjct: 121 --------EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 172

Query: 445 QEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIE 487
                    +  +YWLV NS+  N+GE G  R+ R + N CGI 
Sbjct: 173 DL-------NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIA 209

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 9e-28
 Identities = 53/242 (21%), Positives = 87/242 (35%), Gaps = 43/242 (17%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LP+  D    W     +  +++Q  CGS WA  A  A+  ++       + V LS  +LV
Sbjct: 1   LPKSVD----WRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRK--TGKLVSLSEQNLV 54

Query: 157 SCCKDCGNGCQ-GGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQD 215
            C +  GN    GGF  +A++Y    G +                          +    
Sbjct: 55  DCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTV 114

Query: 216 NEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTI-YAD 274
             P                                 E+ +M+ +   GP+  +M   ++ 
Sbjct: 115 VAPG-------------------------------KEKALMKAVATVGPISVAMDAGHSS 143

Query: 275 MILYKTGI-YKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF 333
              YK+GI ++        +H + ++G+G E      S   KYWLV NS+   WG NG  
Sbjct: 144 FQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEG---ANSDNSKYWLVKNSWGPEWGSNGYV 200

Query: 334 RI 335
           +I
Sbjct: 201 KI 202

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 2e-14
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 388 YSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGI-YKHVAGGPLGEHAIRIIGWGQ 445
              P  E+ +M+ +   GP+  +M   ++    YK+GI ++        +H + ++G+G 
Sbjct: 114 VVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGF 173

Query: 446 EPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ-NECGIE 487
           E      S   KYWLV NS+   WG NG  +I + + N CGI 
Sbjct: 174 EG---ANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIA 213

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 1e-27
 Identities = 42/240 (17%), Positives = 78/240 (32%), Gaps = 48/240 (20%)

Query: 98  PEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS 157
           P  +D    W     + +++DQG CGS WA      +  +  +       + LS  +L+ 
Sbjct: 2   PPEWD----WRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLN--QGTLLSLSEQELLD 55

Query: 158 CCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNE 217
           C       C GG    A+      G +      S QG                    +  
Sbjct: 56  CD-KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELS 114

Query: 218 PNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMIL 277
            N  +                                +   + + GP+  ++  +     
Sbjct: 115 QNEQK--------------------------------LAAWLAKRGPISVAINAFGMQFY 142

Query: 278 Y--KTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
               +   + +    L +HA+ ++G+GQ        S V +W + NS+ T+WGE G + +
Sbjct: 143 RHGISRPLRPLCSPWLIDHAVLLVGYGQR-------SDVPFWAIKNSWGTDWGEKGYYYL 195

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (185), Expect = 3e-16
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 365 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILY--KT 422
             +        S E    + + +  L  NE+ +   + + GP+  ++  +         +
Sbjct: 88  SYQGHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGIS 147

Query: 423 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQN 482
              + +    L +HA+ ++G+GQ        S V +W + NS+ T+WGE G + + RG  
Sbjct: 148 RPLRPLCSPWLIDHAVLLVGYGQR-------SDVPFWAIKNSWGTDWGEKGYYYLHRGSG 200

Query: 483 ECGIEADITAGL 494
            CG+    ++ +
Sbjct: 201 ACGVNTMASSAV 212

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score =  103 bits (256), Expect = 7e-26
 Identities = 49/239 (20%), Positives = 80/239 (33%), Gaps = 47/239 (19%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LP   D    W     +  I++Q  CGS WA  AV A+     I  R  + + LS  +LV
Sbjct: 1   LPSFVD----WRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKI--RTGQLISLSEQELV 54

Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
            C     +GC GG+   A++Y +T G +           +    P    +   +   +  
Sbjct: 55  DCD-TASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRV- 112

Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI 276
                                             N E+ ++      PV  ++       
Sbjct: 113 --------------------------------TRNNESALQSAVASQPVSVTVEAAGAPF 140

Query: 277 LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            + +        G    H + I+G+G +       S   YW+V NS+  NWG  G   +
Sbjct: 141 QHYSSGIFTGPCGTAQNHGVVIVGYGTQ-------SGKNYWIVRNSWGQNWGNQGYIWM 192

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 63.9 bits (154), Expect = 3e-12
 Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 23/171 (13%)

Query: 321 NSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDD 380
           +    + G NG +      Y I              A + +      +            
Sbjct: 55  DCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRV-- 112

Query: 381 LNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRI 440
                       N E+ ++      PV  ++        + +        G    H + I
Sbjct: 113 ----------TRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVI 162

Query: 441 IGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG----QNECGIE 487
           +G+G +       S   YW+V NS+  NWG  G   + R        CGI 
Sbjct: 163 VGYGTQ-------SGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIA 206

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  102 bits (254), Expect = 2e-25
 Identities = 58/239 (24%), Positives = 82/239 (34%), Gaps = 46/239 (19%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE  D    W     +  +R QGSCGS WA  AV  +     I +   + V LS  +LV
Sbjct: 1   LPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRT--GKLVELSEQELV 54

Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
            C     +GC+GG+   A +Y    GI     Y  K                  S     
Sbjct: 55  DCE-RRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRV 113

Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI 276
           +PN                                   ++  I +        +      
Sbjct: 114 QPNNEGN-------------------------------LLNAIAKQPVSVVVESKGRPFQ 142

Query: 277 LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           LYK GI++   G  +  HA+  +G+G+            Y L+ NS+ T WGE G  RI
Sbjct: 143 LYKGGIFEGPCGTKVD-HAVTAVGYGKSG-------GKGYILIKNSWGTAWGEKGYIRI 193

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 70.4 bits (171), Expect = 2e-14
 Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 12/161 (7%)

Query: 333 FRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPA 392
            R             +     +        P   ++            +    +    P 
Sbjct: 57  ERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPN 116

Query: 393 NEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGT 452
           NE  ++  I +        +      LYK GI++   G  +  HA+  +G+G+       
Sbjct: 117 NEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVD-HAVTAVGYGKSG----- 170

Query: 453 SSVVKYWLVANSFNTNWGENGLFRIVRGQNE----CGIEAD 489
                Y L+ NS+ T WGE G  RI R        CG+   
Sbjct: 171 --GKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKS 209

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  101 bits (253), Expect = 2e-25
 Identities = 46/239 (19%), Positives = 75/239 (31%), Gaps = 48/239 (20%)

Query: 98  PEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS 157
           P+  D R      P    +++QG+CGS WA   +  +     I +     + LS  +LV 
Sbjct: 2   PQSIDWRAKGAVTP----VKNQGACGSCWAFSTIATVEGINKIVT--GNLLELSEQELVD 55

Query: 158 CCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNE 217
           C K       G                             +      Y    +     ++
Sbjct: 56  CDKHSYGCKGGYQTTSLQYV---------------ANNGVHTSKVYPYQAKQYKCRATDK 100

Query: 218 PNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYAD-MI 276
           P     I                       +P+N ET       + P+   +        
Sbjct: 101 PGPKVKITGY------------------KRVPSNCETSFLGALANQPLSVLVEAGGKPFQ 142

Query: 277 LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           LYK+G++    G  L  HA+  +G+G             Y ++ NS+  NWGE G  R+
Sbjct: 143 LYKSGVFDGPCGTKLD-HAVTAVGYGTS-------DGKNYIIIKNSWGPNWGEKGYMRL 193

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 72.3 bits (176), Expect = 5e-15
 Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 15/185 (8%)

Query: 310 TSSVVKYWLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKC 369
            ++V     +         E  L       Y           +         +     + 
Sbjct: 31  IATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSKVYPYQA 90

Query: 370 QPGYDVSYEDDLNFGRI--AYSLPANEETIMREIFRHGPVEGSMTIYAD-MILYKTGIYK 426
           +     + +      +I     +P+N ET       + P+   +        LYK+G++ 
Sbjct: 91  KQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFD 150

Query: 427 HVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG----QN 482
              G  L  HA+  +G+G             Y ++ NS+  NWGE G  R+ R     Q 
Sbjct: 151 GPCGTKLD-HAVTAVGYGTS-------DGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQG 202

Query: 483 ECGIE 487
            CG+ 
Sbjct: 203 TCGVY 207

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 8e-25
 Identities = 60/282 (21%), Positives = 98/282 (34%), Gaps = 48/282 (17%)

Query: 57  NALSKLTLSELEMRMGVHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEI 116
           NA   +T  E    M    + K  + ++           E P   D    W     +  +
Sbjct: 61  NAFGDMTSEEFRQVMNGFQNRKPRKGKVFQ----EPLFYEAPRSVD----WREKGYVTPV 112

Query: 117 RDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGN-GCQGGFHGKAW 175
           ++QG CGS WA  A  A+  ++   +   R + LS  +LV C    GN GC GG    A+
Sbjct: 113 KNQGQCGSCWAFSATGALEGQMFRKT--GRLISLSEQNLVDCSGPQGNEGCNGGLMDYAF 170

Query: 176 KYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSY 235
           +Y    G +        +          +Y   + +   D                    
Sbjct: 171 QYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQ---------------- 214

Query: 236 EDDLNFGRIAYSLPANEETIMREIFRHGPVEGS-MTIYADMILYKTGIYKHVAGGP-LGE 293
                           E+ +M+ +   GP+  +    +   + YK GIY          +
Sbjct: 215 ----------------EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD 258

Query: 294 HAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           H + ++G+G E      S   KYWLV NS+   WG  G  ++
Sbjct: 259 HGVLVVGYGFES---TESDNNKYWLVKNSWGEEWGMGGYVKM 297

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 4e-18
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 365 CIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGS-MTIYADMILYKTG 423
                +     + +  +        +P  E+ +M+ +   GP+  +    +   + YK G
Sbjct: 186 PYEATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEG 245

Query: 424 IYKHVAGGP-LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRG-Q 481
           IY          +H + ++G+G E      S   KYWLV NS+   WG  G  ++ +  +
Sbjct: 246 IYFEPDCSSEDMDHGVLVVGYGFES---TESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR 302

Query: 482 NECGIE 487
           N CGI 
Sbjct: 303 NHCGIA 308

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 98.5 bits (244), Expect = 3e-24
 Identities = 50/239 (20%), Positives = 75/239 (31%), Gaps = 52/239 (21%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           LPE  D R      P    +++QGSCGS WA   V  +     I +     + LS  +LV
Sbjct: 1   LPEQIDWRKKGAVTP----VKNQGSCGSCWAFSTVSTVESINQIRT--GNLISLSEQELV 54

Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
            C     +GC GG    A++Y +  G +              +             CQ  
Sbjct: 55  DCD-KKNHGCLGGAFVFAYQYIINNGGI--------------DTQANYPYKAVQGPCQAA 99

Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI 276
                       P  +                      + + +             A   
Sbjct: 100 SKVVSIDGYNGVPFCNEXA-------------------LKQAVAVQPSTVAIDASSAQFQ 140

Query: 277 LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
            Y +GI+    G  L  H + I+G+              YW+V NS+   WGE G  R+
Sbjct: 141 QYSSGIFSGPCGTKLN-HGVTIVGYQAN-----------YWIVRNSWGRYWGEKGYIRM 187

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 62.7 bits (151), Expect = 6e-12
 Identities = 32/151 (21%), Positives = 48/151 (31%), Gaps = 19/151 (12%)

Query: 339 PYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM 398
              +   +Y+  +                 CQ    V   D  N          NE  + 
Sbjct: 66  GAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSIDGYNGVP-----FCNEXALK 120

Query: 399 REIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKY 458
           + +             A    Y +GI+    G  L  H + I+G+              Y
Sbjct: 121 QAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLN-HGVTIVGYQAN-----------Y 168

Query: 459 WLVANSFNTNWGENGLFRIVR--GQNECGIE 487
           W+V NS+   WGE G  R++R  G   CGI 
Sbjct: 169 WIVRNSWGRYWGEKGYIRMLRVGGCGLCGIA 199

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (243), Expect = 5e-24
 Identities = 36/238 (15%), Positives = 70/238 (29%), Gaps = 43/238 (18%)

Query: 98  PEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS 157
           P+  D R        +  +++QG CGS WA  +V A+  ++   +   + + LS  +LV 
Sbjct: 2   PDSVDYRKKG----YVTPVKNQGQCGSCWAFSSVGALEGQLKKKT--GKLLNLSPQNLVD 55

Query: 158 CCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNE 217
           C  +    C GG+   A++Y      +         G     +             ++  
Sbjct: 56  CVSENDG-CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIP 114

Query: 218 PNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMIL 277
               + +++                                                   
Sbjct: 115 EGNEKALKRAV------------------------------ARVGPVSVAIDASLTSFQF 144

Query: 278 YKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           Y  G+Y   +      +   +        G G     K+W++ NS+  NWG  G   +
Sbjct: 145 YSKGVYYDESCNSDNLNHAVLAV------GYGIQKGNKHWIIKNSWGENWGNKGYILM 196

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 4e-12
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 9/136 (6%)

Query: 363 PECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKT 422
           P   ++    Y+ + +     G         +                         Y  
Sbjct: 88  PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSK 147

Query: 423 GIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQ- 481
           G+Y   +      +   +        G G     K+W++ NS+  NWG  G   + R + 
Sbjct: 148 GVYYDESCNSDNLNHAVLAV------GYGIQKGNKHWIIKNSWGENWGNKGYILMARNKN 201

Query: 482 NECGIEADITAGLPKI 497
           N CGI     A  PK+
Sbjct: 202 NACGIANL--ASFPKM 215

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 97.0 bits (240), Expect = 1e-23
 Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 43/238 (18%)

Query: 98  PEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVS 157
           P   D    W     +  ++DQG CGS WA  A+  +  +  +A     ++    + ++ 
Sbjct: 2   PAAVD----WRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLS---EQMLV 54

Query: 158 CCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNE 217
            C    +GC GG    A+++                     E     Y   S+       
Sbjct: 55  SCDKTDSGCSGGLMNNAFEWI------------------VQENNGAVYTEDSYPYASGEG 96

Query: 218 PNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMIL 277
            + P        G  ++   +         LP +E  I   +  +GPV  ++ + A   +
Sbjct: 97  ISPPCTTSGHTVGATITGHVE---------LPQDEAQIAAWLAVNGPV--AVAVDASSWM 145

Query: 278 YKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
             TG           +H + ++G+          + V YW++ NS+ T WGE G  RI
Sbjct: 146 TYTGGVMTSCVSEQLDHGVLLVGYNDS-------AAVPYWIIKNSWTTQWGEEGYIRI 196

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 75.8 bits (185), Expect = 2e-16
 Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 21/177 (11%)

Query: 321 NSFNTNWGENGLFRIGCRPYEIP---CERYMNGSRSSCQANEPNTPECIRKCQPGYDVSY 377
           +   T+ G +G        + +       Y   S         + P        G  ++ 
Sbjct: 55  SCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITG 114

Query: 378 EDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHA 437
             +L         P +E  I   +  +GPV  ++ + A   +  TG           +H 
Sbjct: 115 HVEL---------PQDEAQIAAWLAVNGPV--AVAVDASSWMTYTGGVMTSCVSEQLDHG 163

Query: 438 IRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL 494
           + ++G+          + V YW++ NS+ T WGE G  RI +G N+C ++ + ++ +
Sbjct: 164 VLLVGYNDS-------AAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 91.3 bits (225), Expect = 1e-21
 Identities = 48/239 (20%), Positives = 69/239 (28%), Gaps = 50/239 (20%)

Query: 97  LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLV 156
           +PE  D    W     +  +++QGSCGS WA  AV  +   + I +        S  +L+
Sbjct: 1   IPEYVD----WRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRT--GNLNEYSEQELL 54

Query: 157 SCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDN 216
            C +       G                             Y I                
Sbjct: 55  DCDRRSYGCNGGYPWSALQLVA------------------QYGIHYRNTYPYEGVQRYCR 96

Query: 217 EPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMI 276
                    K      V                 NE  ++  I              D  
Sbjct: 97  SREKGPYAAKTDGVRQVQPY--------------NEGALLYSIANQPVSVVLEAAGKDFQ 142

Query: 277 LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
           LY+ GI+    G  +  HA+  +G+G             Y L+ NS+ T WGENG  RI
Sbjct: 143 LYRGGIFVGPCGNKVD-HAVAAVGYGPN-----------YILIKNSWGTGWGENGYIRI 189

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 62.0 bits (149), Expect = 1e-11
 Identities = 31/158 (19%), Positives = 45/158 (28%), Gaps = 16/158 (10%)

Query: 336 GCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEE 395
                       +              P    +                 +    P NE 
Sbjct: 60  SYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119

Query: 396 TIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSV 455
            ++  I              D  LY+ GI+    G  +  HA+  +G+G           
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD-HAVAAVGYGPN--------- 169

Query: 456 VKYWLVANSFNTNWGENGLFRIVRGQNE----CGIEAD 489
             Y L+ NS+ T WGENG  RI RG       CG+   
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 85.1 bits (209), Expect = 7e-19
 Identities = 60/287 (20%), Positives = 86/287 (29%), Gaps = 47/287 (16%)

Query: 52  YGAEKNALSKLTLSELEMRMG---VHPDSKLPQNRLPLLVQLSDPLEELPEGFDARINWP 108
            G   N LS L+L E + R        +    Q  L             P   D R    
Sbjct: 39  NGGAINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRT 98

Query: 109 YCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQG 168
             P    IR QG CGS WA   V A            + + L+  +LV C     +GC G
Sbjct: 99  VTP----IRMQGGCGSAWAFSGVAATESAYLA--YRDQSLDLAEQELVDCA--SQHGCHG 150

Query: 169 GFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQ 228
               +  +Y    G+V                  E Y            PN         
Sbjct: 151 DTIPRGIEYIQHNGVVQ-----------------ESYYRYVAREQSCRRPNAQRFGISNY 193

Query: 229 PGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAG 288
                   + +             E + +       + G   + A        I +   G
Sbjct: 194 CQIYPPNANKIR------------EALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNG 241

Query: 289 GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI 335
                HA+ I+G+         +  V YW+V NS++TNWG+NG    
Sbjct: 242 YQPNYHAVNIVGYS-------NAQGVDYWIVRNSWDTNWGDNGYGYF 281

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 78.2 bits (191), Expect = 1e-16
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 7/165 (4%)

Query: 323 FNTNWGENGLFRIGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLN 382
                  +   + GC    IP            Q +        + C+      +     
Sbjct: 134 LAEQELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNY 193

Query: 383 FGRIAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIG 442
                 +     E + +       + G   + A        I +   G     HA+ I+G
Sbjct: 194 CQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVG 253

Query: 443 WGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIE 487
           +         +  V YW+V NS++TNWG+NG        +   IE
Sbjct: 254 YS-------NAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIE 291

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	524
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	100.0
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	100.0
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	100.0
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	100.0
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	100.0
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	100.0
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	100.0
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	100.0
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	100.0
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	100.0
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	100.0
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	100.0
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	100.0
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	100.0
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	100.0
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	100.0
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	99.93
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	99.93
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	99.92
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	99.92
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	99.92
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	99.91
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	99.9
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	99.9
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	99.89
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	99.89
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	99.88
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	99.88
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	99.88
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	99.87
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	99.87
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	99.87
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	99.86
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	99.86
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	99.85
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	99.59
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	99.43
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	98.64
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	98.21
d1cv8a_	173	Staphopain StpA {Staphylococcus aureus [TaxId: 128	95.18
d1pxva_	183	Staphopain SspB {Staphylococcus aureus [TaxId: 128	94.46

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-65  Score=515.93  Aligned_cols=303  Identities=23%  Similarity=0.369  Sum_probs=239.9

Q ss_pred             CcHHHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCC--CccccccccccccchHHHHHHHhCCCCCCCCC
Q psy1664           3 KSTADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPK--LPFYGAEKNALSKLTLSELEMRMGVHPDSKLP   80 (524)
Q Consensus         3 ~st~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~--~~~~~~g~N~fsd~t~eE~~~~~~~~~~~~~~   80 (524)
                      .+..++|++|+++|+|.|++. |...|+++|.+|+++|++||++..  ..+|++++|+|+|||.|||+++++........
T Consensus         6 ~~l~~~F~~f~~~~~K~Y~~~-ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N~fsDlt~eEf~~~~~~~~~~~~~   84 (316)
T d1cs8a_           6 HSLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR   84 (316)
T ss_dssp             GGGHHHHHHHHHHTTCCCCTT-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCCCS
T ss_pred             HHHHHHHHHHHHHhCCcCCCH-HHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEeceeccccCcHHHHhhhccccccccc
Confidence            356788999999999999874 568899999999999999998631  36899999999999999999987754333211


Q ss_pred             CCCCCcccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcC
Q psy1664          81 QNRLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCK  160 (524)
Q Consensus        81 ~~~~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~  160 (524)
                         . ..........+||++||||++    |+|+||||||.||||||||++++||++++++++  ..+.||+|+|+||+.
T Consensus        85 ---~-~~~~~~~~~~~lP~s~Dwr~~----g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i~~~--~~~~lS~Q~lvdC~~  154 (316)
T d1cs8a_          85 ---K-GKVFQEPLFYEAPRSVDWREK----GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSG  154 (316)
T ss_dssp             ---C-CEECCCCTTCCCCSCEEGGGG----TCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCG
T ss_pred             ---c-CccccCcccccCCCceECCcC----CcccccccCCCCceeeehhhhHHHHHHHHhhcC--Ccccchhhhhhhccc
Confidence               1 111122334589999999998    999999999999999999999999999999986  468999999999976


Q ss_pred             CC-CCCCCCCChHHHHHHHHHhCC-ccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccc
Q psy1664         161 DC-GNGCQGGFHGKAWKYWVTTGI-VSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDD  238 (524)
Q Consensus       161 ~~-~~gC~GG~~~~a~~~~~~~Gi-~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~  238 (524)
                      .. +.+|.||++..|++|++.+|+ .+|..|       ||...        ...|.......              ....
T Consensus       155 ~~~~~~c~gg~~~~a~~y~~~~g~~~~e~~~-------~~~~~--------~~~~~~~~~~~--------------~~~~  205 (316)
T d1cs8a_         155 PQGNEGCNGGLMDYAFQYVQDNGGLDSEESY-------PYEAT--------EESCKYNPKYS--------------VAND  205 (316)
T ss_dssp             GGTCCGGGCBCHHHHHHHHHHHTCEEBTTTS-------CCCSS--------CCCCCCCGGGE--------------EECC
T ss_pred             cccCCCCCCCchHHHHHHHHhcCcccccccc-------ccccc--------ccccccccccc--------------cccc
Confidence            43 468999999999999999974 555555       77654        44443221100              0000


Q ss_pred             cccceeeeecCCCHHHHHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCC-CCCcEEEEEEeccCCCCCCCccceeE
Q psy1664         239 LNFGRIAYSLPANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGP-LGEHAIRIIGWGQEPLGEGTSSVVKY  316 (524)
Q Consensus       239 ~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~-~~~HaV~iVGyg~~~~~~g~~~g~~Y  316 (524)
                          ........+++.|+++|+.+|||+|+|.+. .+|++|++|||..+.|.. .++|||+|||||.+..   ..++++|
T Consensus       206 ----~~~~~~~~~~~~l~~~l~~~gpv~v~i~~~~~~f~~y~~Gi~~~~~c~~~~~nHaV~iVGyG~d~~---~~~g~~Y  278 (316)
T d1cs8a_         206 ----AGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST---ESDNNKY  278 (316)
T ss_dssp             ----CCEEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCTTCCSSCCCEEEEEEEEEEECC---SSCCEEE
T ss_pred             ----cccccccCcHHHHHHHHHHhCCeEEEEEeccchhccccCCcccCCCCCCCcCCEEEEEEEEccccc---CCCCCeE
Confidence                011244567899999999999999999986 679999999999888764 5899999999997631   2357999


Q ss_pred             EEEeCCCCCcccccCccccccccCccCCcCcCCcCCC
Q psy1664         317 WLVANSFNTNWGENGLFRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       317 WivkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      ||||||||++|||+|||||+|+.. ..||+...+++|
T Consensus       279 WIikNSWG~~WGe~GY~ri~r~~~-n~CGI~~~~~yP  314 (316)
T d1cs8a_         279 WLVKNSWGEEWGMGGYVKMAKDRR-NHCGIASAASYP  314 (316)
T ss_dssp             EEEECSBCTTSTBTTEEEEECSSS-SGGGTTTSCEEE
T ss_pred             EEEEeCCCCCcccCCEEEEeeCCC-CcCccCCeeeee
Confidence            999999999999999999999753 269998776665

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=100.00  E-value=6.7e-62  Score=488.60  Aligned_cols=284  Identities=23%  Similarity=0.353  Sum_probs=222.1

Q ss_pred             HHHHHHHHHHHccccccccccccccchhHHhhhhhhhhhcCCCCccccccccccccchHHHHHHHhCCCCCC-C-C-CCC
Q psy1664           6 ADAVATFLKDLDLSQSSRNHSNGVFCDLSKAFDRVDHSILLPKLPFYGAEKNALSKLTLSELEMRMGVHPDS-K-L-PQN   82 (524)
Q Consensus         6 ~~~f~~f~~~~~k~y~~~~~~~~r~~~f~~nl~~I~~~N~~~~~~~~~~g~N~fsd~t~eE~~~~~~~~~~~-~-~-~~~   82 (524)
                      +..|++|+++|+|.|.+.+|...|+.+|.+|++.|++||+         ++|+|+|||.|||+.++...... . . ...
T Consensus         2 ~~~f~~f~~~~~K~Y~~~~e~~~r~~if~~N~~~I~~~n~---------~~N~fsDlt~eEf~~~~~~~~~~~~~~~~~~   72 (302)
T d1xkga1           2 IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG---------AINHLSDLSLDEFKNRFLMSAEAFEHLKTQF   72 (302)
T ss_dssp             CCSHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHCC---------CCCTTTTSCHHHHHHHHSBCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcc---------CCCcCCCCCHHHHHHHhcCCCcccccccccC
Confidence            4579999999999999999999999999999999999994         68999999999998765432110 0 0 000


Q ss_pred             CCCcccccCCCCCCCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCC
Q psy1664          83 RLPLLVQLSDPLEELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC  162 (524)
Q Consensus        83 ~~~~~~~~~~~~~~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~  162 (524)
                      .............+||++||||++    |+|+||||||.||||||||++++||++++++++  ..+.||+|+|+||+.  
T Consensus        73 ~~~~~~~~~~~~~~~P~~~DwR~~----g~vtpVkdQG~CGsCwAfa~~~~lE~~~~i~~~--~~~~lS~q~lvdC~~--  144 (302)
T d1xkga1          73 DLNAETNACSINGNAPAEIDLRQM----RTVTPIRMQGGCGSAWAFSGVAATESAYLAYRD--QSLDLAEQELVDCAS--  144 (302)
T ss_dssp             C-----CBCCCCSCCCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHC--CCCCBCHHHHHHHTC--
T ss_pred             CCCccccccccCCCCCcceecccc----CccccceeccccceehhhhhHHhHHHHHHHhcC--CcccchhHHHHhccc--
Confidence            000011112233579999999998    899999999999999999999999999999986  468999999999974  


Q ss_pred             CCCCCCCChHHHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccc
Q psy1664         163 GNGCQGGFHGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFG  242 (524)
Q Consensus       163 ~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (524)
                      +.+|.||++..|++|++++|+++|++|       ||...        .+.|+.......               ....| 
T Consensus       145 ~~~C~gG~~~~a~~~~~~~Gi~~e~~y-------PY~~~--------~~~C~~~~~~~~---------------~~~~~-  193 (302)
T d1xkga1         145 QHGCHGDTIPRGIEYIQHNGVVQESYY-------RYVAR--------EQSCRRPNAQRF---------------GISNY-  193 (302)
T ss_dssp             SSTTBCCCHHHHHHHHHHHCEEBGGGS-------CCCSS--------CCCCCCCSSCEE---------------CCSEE-
T ss_pred             cCccCCCccchhhhhhccCcccchhhc-------ccccc--------cccccccccccc---------------eeeee-
Confidence            579999999999999999999999988       99876        667764322110               00111 


Q ss_pred             eeeeecCCCHHHHHHHHHHcC-CeEEEEEec--ccccccCCceEEcCCCCC-CCCcEEEEEEeccCCCCCCCccceeEEE
Q psy1664         243 RIAYSLPANEETIMREIFRHG-PVEGSMTIY--ADMILYKTGIYKHVAGGP-LGEHAIRIIGWGQEPLGEGTSSVVKYWL  318 (524)
Q Consensus       243 ~~~~~~~~~~~~ik~~l~~~G-PV~v~i~v~--~~f~~Y~sGIy~~~~~~~-~~~HaV~iVGyg~~~~~~g~~~g~~YWi  318 (524)
                        ....+.++++|+++|+..+ |+++.+.+.  ..|+.|++||+..++|.. .++|||+|||||++       +|++|||
T Consensus       194 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~gi~~~~~~~~~~~~HaV~iVGyg~~-------~g~~YWi  264 (302)
T d1xkga1         194 --CQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNA-------QGVDYWI  264 (302)
T ss_dssp             --EECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCCSSCCEEEEEEEEEEEEE-------TTEEEEE
T ss_pred             --eeecCchHHHHHHhhhhcccccceeecccccchhhccccceeecCCCCCCcCCEEEEEEEEecc-------CCeEEEE
Confidence              1223567889999988755 445444443  568899999998777755 46799999999986       5789999


Q ss_pred             EeCCCCCcccccCccccccccCccCCcCcC
Q psy1664         319 VANSFNTNWGENGLFRIGCRPYEIPCERYM  348 (524)
Q Consensus       319 vkNSWG~~WGe~Gy~ri~~~~~~~~c~~~~  348 (524)
                      ||||||++|||+|||||+|+..  .|++..
T Consensus       265 vkNSWG~~WGe~GY~~i~~~~n--~cgi~~  292 (302)
T d1xkga1         265 VRNSWDTNWGDNGYGYFAANID--LMMIEE  292 (302)
T ss_dssp             EECSBCTTSTBTTEEEEECSSC--GGGTTT
T ss_pred             EEcCCCCchhcCCEEEEECCCC--eeccCC
Confidence            9999999999999999999754  588754

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-54  Score=422.33  Aligned_cols=252  Identities=54%  Similarity=1.220  Sum_probs=192.3

Q ss_pred             CCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCC-CCCCCCCCChHHH
Q psy1664          96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD-CGNGCQGGFHGKA  174 (524)
Q Consensus        96 ~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~-~~~gC~GG~~~~a  174 (524)
                      .||++||||+.|+.|++|+||||||.||||||||++++||+++++++++.....||+|+|++|+.. .+.||.||++..|
T Consensus         1 ~lP~~~D~R~~w~~~~~vtpV~dQg~cGsCwAfA~~~~lEs~~~i~~~~~~~~~lS~~~l~~~~~~~~~~gc~gg~~~~a   80 (254)
T d1gmya_           1 KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEA   80 (254)
T ss_dssp             CCCSSEEHHHHSTTCGGGGCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTSSCCCBCHHHHHHHSGGGGBCGGGCBCHHHH
T ss_pred             CCCcCCcchhhcCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHCCCCccccchHHHHhhccccCCCCCCCCcHHHH
Confidence            499999999999999999999999999999999999999999999987666789999999999753 3469999999999


Q ss_pred             HHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHH
Q psy1664         175 WKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEET  254 (524)
Q Consensus       175 ~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (524)
                      ++++.+.|+++|+.|+....|.++..+          .|...                                      
T Consensus        81 ~~~~~~~G~~~e~~~~~~~~~~~~~~~----------~~~~~--------------------------------------  112 (254)
T d1gmya_          81 WNFWTRKGLVSGGLYESHVGCRPYSIP----------PCEHH--------------------------------------  112 (254)
T ss_dssp             HHHHHHTCBCBCCSTTCCCSSSCCCSC----------CCBSS--------------------------------------
T ss_pred             HHHHHHcCccccccccccccccccccc----------ccccc--------------------------------------
Confidence            999999999999888333333332221          00000                                      


Q ss_pred             HHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccc
Q psy1664         255 IMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR  334 (524)
Q Consensus       255 ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~r  334 (524)
                                                                                                      
T Consensus       113 --------------------------------------------------------------------------------  112 (254)
T d1gmya_         113 --------------------------------------------------------------------------------  112 (254)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCccCCcCcCCcCCCCCCCCCCCCcccccccccCccccccCcceeeeEEEEcCCCHHHHHHHHHhCCCEEEEEecc
Q psy1664         335 IGCRPYEIPCERYMNGSRSSCQANEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMTIY  414 (524)
Q Consensus       335 i~~~~~~~~c~~~~~~~~~~C~~~~~~~p~C~~~C~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~gPv~~~~~~~  414 (524)
                                   ..+..+.|.. ....+.....|.......+...+......+....+++.||++|+.+|||+++|.+.
T Consensus       113 -------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gpv~~~~~~~  178 (254)
T d1gmya_         113 -------------VNGSRPPCTG-EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY  178 (254)
T ss_dssp             -------------SCCSSCBCCS-CCCCCCCCCSCCTTCCSCHHHHCBCBSCCEECCSCHHHHHHHHHHHCCEEEEEEEE
T ss_pred             -------------ccCccCcccc-ccCCccccccccCCcccceeeeeeeeeeeeccccHHHHHHHHHHHcCCEEEEEEee
Confidence                         0000001110 00011111111111111121222222233455678999999999999999999998


Q ss_pred             cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCCCCCcEEEEEeCCCccCccccceecc
Q psy1664         415 ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIVRGQNECGIEADITAGL  494 (524)
Q Consensus       415 ~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~  494 (524)
                      ++|+.|.+||+..++....++|||+|||||++.       +.+|||||||||++||++|||||+||.|.||||+++++++
T Consensus       179 ~~f~~y~~gi~~~~~~~~~~~Hav~IVGyg~~~-------g~~ywIvkNSWG~~WGd~GYf~i~~~~n~cgi~~~~~~~~  251 (254)
T d1gmya_         179 SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVEN-------GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI  251 (254)
T ss_dssp             GGGTTCCSSEECCCSCCEEEEEEEEEEEEEEET-------TEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECC
T ss_pred             chhhhccCCccccccccccccEEEEEEEEeccC-------CceEEEEEcCCCCCcCCCceEEEEcCCCccCcCCceEecc
Confidence            899999999998877777789999999999877       8899999999999999999999999999999999999999


Q ss_pred             ce
Q psy1664         495 PK  496 (524)
Q Consensus       495 p~  496 (524)
                      |.
T Consensus       252 p~  253 (254)
T d1gmya_         252 PR  253 (254)
T ss_dssp             BC
T ss_pred             CC
Confidence            85

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=1.6e-48  Score=372.43  Aligned_cols=210  Identities=30%  Similarity=0.533  Sum_probs=166.9

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++++++  ..+.||+|+|++|... ..+|.||++..+++
T Consensus         1 LP~~~Dwr~~----~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~--~~~~lS~q~l~~~~~~-~~~~~G~~~~~~~~   73 (216)
T d1ppoa_           1 LPENVDWRKK----GAVTPVRHQGSCGSCWAFSAVATVEGINKIRTG--KLVELSEQELVDCERR-SHGCKGGYPPYALE   73 (216)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCSS-SCTTBCCCHHHHHH
T ss_pred             CCCcccCCcC----CCCCCcccCCcCchHHHHHHHHHHHHHHHHHhC--CCCCccHHHHhhhhhc-cCcccccccccccc
Confidence            8999999998    899999999999999999999999999999986  4689999999999653 57999999999999


Q ss_pred             HHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHH
Q psy1664         177 YWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM  256 (524)
Q Consensus       177 ~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik  256 (524)
                      ++++.|+++|++|       ||...        ...|........        .         ........+..+.+.++
T Consensus        74 ~~~~~G~~~e~~y-------Py~~~--------~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~  121 (216)
T d1ppoa_          74 YVAKNGIHLRSKY-------PYKAK--------QGTCRAKQVGGP--------I---------VKTSGVGRVQPNNEGNL  121 (216)
T ss_dssp             HHHHHCBCBTTTS-------CCCSS--------CCCCCGGGCCSC--------C---------BCCCEEEECCSSCHHHH
T ss_pred             cccccCccccccC-------Ccccc--------cccccccccccc--------c---------eeeccceeecccHHHHH
Confidence            9999999999888       99765        344432211100        0         00011123344444555


Q ss_pred             HHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcccc
Q psy1664         257 REIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI  335 (524)
Q Consensus       257 ~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri  335 (524)
                      ++++.+|||++.+.+. ..|+.|++|||..+.+ ..++|||+|||||++       .+++|||||||||++|||+|||||
T Consensus       122 ~~~l~~gpv~~~~~~~~~~~~~y~~g~~~~~~~-~~~~Hav~iVGyg~~-------~~~~ywivrNSWG~~WGd~Gy~~i  193 (216)
T d1ppoa_         122 LNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCG-TKVDHAVTAVGYGKS-------GGKGYILIKNSWGTAWGEKGYIRI  193 (216)
T ss_dssp             HHHHHHSCEEEEECCCSHHHHHCCSSEECCSCC-SCCCEEEEEEEEEEE-------TTEEEEEEECSBCSSSTBTTEEEE
T ss_pred             HHHHhhCCCceeeeeccccceecCCcccccccc-ccCCcEEEEEecccc-------CCCceEEEECCCCCCcccCCEEEE
Confidence            5666789999999986 4568999999977654 457999999999986       468999999999999999999999


Q ss_pred             ccccCc--cCCcCcCCcCCC
Q psy1664         336 GCRPYE--IPCERYMNGSRS  353 (524)
Q Consensus       336 ~~~~~~--~~c~~~~~~~~~  353 (524)
                      +|+...  ..|++...+.+|
T Consensus       194 ~~~~~~~~~~Cgi~~~~~~p  213 (216)
T d1ppoa_         194 KRAPGNSPGVCGLYKSSYYP  213 (216)
T ss_dssp             ECCCSSSSCGGGTTSCCEEE
T ss_pred             EcCCCCCCCcCccccEeeee
Confidence            998754  358887666544

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=6.2e-48  Score=368.94  Aligned_cols=210  Identities=26%  Similarity=0.536  Sum_probs=170.1

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      .|++||||++    ++|+||||||.||||||||++++||++++++++  ..+.||+|+|++|.. .+.||.|+.+..++.
T Consensus         1 ~P~~~DwR~~----~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~--~~~~lS~q~l~~c~~-~~~g~~g~~~~~~~~   73 (218)
T d1yala_           1 YPQSIDWRAK----GAVTPVKNQGACGSCWAFSTIATVEGINKIVTG--NLLELSEQELVDCDK-HSYGCKGGYQTTSLQ   73 (218)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSCTTBCCCHHHHHH
T ss_pred             CCCCEeCCCC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHHcC--CCcccchhhhhcccc-ccCCCcccccchhhh
Confidence            4999999998    889999999999999999999999999999986  468899999999964 367999999999999


Q ss_pred             HHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHH
Q psy1664         177 YWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM  256 (524)
Q Consensus       177 ~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik  256 (524)
                      ++++.|+++|+.+       ||...        ...|.....          ...   ...    ......++.+.++++
T Consensus        74 ~~~~~g~~~e~~~-------py~~~--------~~~~~~~~~----------~~~---~~~----~~~~~~~~~~~~~~~  121 (218)
T d1yala_          74 YVANNGVHTSKVY-------PYQAK--------QYKCRATDK----------PGP---KVK----ITGYKRVPSNCETSF  121 (218)
T ss_dssp             HHHHHCBCBTTTS-------CCCSS--------CCCCCGGGC----------CSC---CBC----CSEEEECCSSBHHHH
T ss_pred             hhhhhcccccccC-------Ccccc--------cCccccccc----------ccc---cee----eccceEeCCccHHHH
Confidence            9999999998777       99765        222211100          000   000    011234566677888


Q ss_pred             HHHHHcCCeEEEEEecc-cccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcccc
Q psy1664         257 REIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI  335 (524)
Q Consensus       257 ~~l~~~GPV~v~i~v~~-~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri  335 (524)
                      ++|+.+|||++++.+.. .|+.|++|||..+.+ ..++|||+|||||++       ++++|||||||||++|||+|||||
T Consensus       122 ~~~~~~~pv~~~~~~~~~~~~~y~~Giy~~~~~-~~~~Hav~IVGyg~~-------~g~~ywivkNSWG~~WGd~Gy~~I  193 (218)
T d1yala_         122 LGALANQPLSVLVEAGGKPFQLYKSGVFDGPCG-TKLDHAVTAVGYGTS-------DGKNYIIIKNSWGPNWGEKGYMRL  193 (218)
T ss_dssp             HHHHTTSCEEEEECCCSHHHHTCCSSEECCSCC-SCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTEEEE
T ss_pred             HHHHHhCCceEEEEecccchhhcccceeeeccc-ccCCcEEEEEEeecc-------CCceEEEEECCCCCCcccCCEEEE
Confidence            89999999999999874 578999999987754 457999999999976       478999999999999999999999


Q ss_pred             ccccCc--cCCcCcCCcCCC
Q psy1664         336 GCRPYE--IPCERYMNGSRS  353 (524)
Q Consensus       336 ~~~~~~--~~c~~~~~~~~~  353 (524)
                      +|+...  ..||+.+.+++|
T Consensus       194 ~~~~~~~~~~CGI~~~~~~p  213 (218)
T d1yala_         194 KRQSGNSQGTCGVYKSSYYP  213 (218)
T ss_dssp             ECCCSBSCCGGGTTSSCEEE
T ss_pred             EccCCCCCCcCCccceeeec
Confidence            998644  369988777665

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-48  Score=384.83  Aligned_cols=216  Identities=27%  Similarity=0.528  Sum_probs=168.3

Q ss_pred             CCCCCccccccCCCCCCCCccCCCCC---CCccHHHHHHHHHHHHHHHHHcCCC-ccccCCHHHHHhhcCCCCCCCCCCC
Q psy1664          95 EELPEGFDARINWPYCPTIQEIRDQG---SCGSGWALGAVEAMSDRVCIASRGK-RHVRLSSDDLVSCCKDCGNGCQGGF  170 (524)
Q Consensus        95 ~~lP~s~DwR~~~~~~g~vtpvkdQg---~CGsCwAfA~~~~le~~~~i~~~~~-~~~~LS~q~lvdC~~~~~~gC~GG~  170 (524)
                      .+||++||||+.+ ....++||||||   .||||||||++++||+++++++++. ....||+|+|++|..  ..+|.||+
T Consensus        32 ~~LP~~~DwR~~~-~~~~~tpvkdQG~~~~CGsCWAfAa~~~lE~~~~i~~~~~~~~~~lS~q~l~~~~~--~~~c~GG~  108 (275)
T d1deua_          32 ADLPKSWDWRNVD-GVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGN--AGSCEGGN  108 (275)
T ss_dssp             GGSCSCEETTSBT-TBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSS--SEETBEEC
T ss_pred             ccCCCccccCcCC-CcCCCCCcccCCCCCCCcCHHHHHHHHHHHHHHHHHcCCcccccccchhheecccc--ccccCCcc
Confidence            4799999999973 234679999999   6999999999999999999987654 246799999999964  35999999


Q ss_pred             hHHHHHHHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCC-CccccccccCCCccccccccccceeeeecC
Q psy1664         171 HGKAWKYWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPN-TPECIRKCQPGYDVSYEDDLNFGRIAYSLP  249 (524)
Q Consensus       171 ~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (524)
                      +..+++|+.++|+++|+.|       ||...        ...|...... .......|..     ......+....+...
T Consensus       109 ~~~a~~~~~~~G~~~e~~~-------PY~~~--------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~  168 (275)
T d1deua_         109 DLSVWDYAHQHGIPDETCN-------NYQAK--------DQECDKFNQCGTCNEFKECHA-----IRNYTLWRVGDYGSL  168 (275)
T ss_dssp             HHHHHHHHHHTCBCBGGGS-------CCCSS--------CCCCCHHHHSEEEEETTEEEE-----CSSCCCBCEEEEEEE
T ss_pred             cccccchhhcccccccccc-------ccccc--------CCCcccccccCcccccceeee-----ccceeEEEeCceeec
Confidence            9999999999999999888       99865        2222211000 0000001100     001111111223334


Q ss_pred             CCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccc
Q psy1664         250 ANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGE  329 (524)
Q Consensus       250 ~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe  329 (524)
                      .+.+.||++|+++|||+++|.++++|++|++|||..+++...++|||+|||||++       ++++|||||||||++|||
T Consensus       169 ~~~e~ik~~l~~~GPv~v~~~~~~~f~~y~~Gi~~~~~~~~~~~HAV~IVGyg~~-------~g~~ywivrNSWG~~WGd  241 (275)
T d1deua_         169 SGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGIS-------DGTEYWIVRNSWGEPWGE  241 (275)
T ss_dssp             CSHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEECBCCSCCCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTB
T ss_pred             CcHHHHHHHHHhCCCcEEEEEeccchhccCCCcccCccccccCCeEEEEEEEecc-------CCcEEEEEECCCCCCccc
Confidence            5678999999999999999999999999999999988777789999999999986       478999999999999999


Q ss_pred             cCccccccccC
Q psy1664         330 NGLFRIGCRPY  340 (524)
Q Consensus       330 ~Gy~ri~~~~~  340 (524)
                      +|||||+|+.+
T Consensus       242 ~Gyf~I~~~~~  252 (275)
T d1deua_         242 RGWLRIVTSTY  252 (275)
T ss_dssp             TTEEEEECTTH
T ss_pred             CCEEEEECCCC
Confidence            99999999876

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=100.00  E-value=4.4e-47  Score=362.23  Aligned_cols=209  Identities=28%  Similarity=0.549  Sum_probs=165.6

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++++++  ..+.||+|+|++|+.. ..||.||++..|++
T Consensus         1 LP~~~DwR~~----~~itpV~dQg~cgsCwAfa~~~~le~~~~~~~~--~~~~lS~q~l~~c~~~-~~gc~Gg~~~~a~~   73 (216)
T d1cqda_           1 LPDSIDWREN----GAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTG--DLISLSEQQLVDCTTA-NHGCRGGWMNPAFQ   73 (216)
T ss_dssp             CCSCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCCCHHHHHH
T ss_pred             CCCcccCCcC----CCCCCcccCCCCchHHHHHHHHHHHHHHHHHhC--CCccccHHHhhhcccc-cCCCCCcchHHHHH
Confidence            8999999998    899999999999999999999999999999986  4589999999999754 56999999999999


Q ss_pred             HHHHhCCcc-CCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHH
Q psy1664         177 YWVTTGIVS-GGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETI  255 (524)
Q Consensus       177 ~~~~~Gi~~-e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  255 (524)
                      |++++|++. |+.|       ||...        ...|........         .     ....    ...+..+.+++
T Consensus        74 y~~~~g~~~~e~~~-------p~~~~--------~~~~~~~~~~~~---------~-----~~~~----~~~~~~~~~~~  120 (216)
T d1cqda_          74 FIVNNGGINSEETY-------PYRGQ--------DGICNSTVNAPV---------V-----SIDS----YENVPSHNEQS  120 (216)
T ss_dssp             HHHHHTSBCBTTTS-------CCCSS--------CCCCCSSSCCCS---------B-----CCSE----EEECCSSCHHH
T ss_pred             HHHhcCCccccccC-------Ccccc--------ccccccccCCce---------e-----Eeee----EEecCCcchhh
Confidence            999998654 4445       88764        222222111100         0     0011    12334556778


Q ss_pred             HHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccc
Q psy1664         256 MREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR  334 (524)
Q Consensus       256 k~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~r  334 (524)
                      ++.|+..+||++++.+. ..|..|++|||... ....++|||+|||||++       .+++|||||||||++|||+||||
T Consensus       121 ~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~~~-~~~~~~Hav~iVGyg~~-------~~~~~wiv~NSWG~~WGd~Gy~~  192 (216)
T d1cqda_         121 LQKAVANQPVSVTMDAAGRDFQLYRSGIFTGS-CNISANHALTVVGYGTE-------NDKDFWIVKNSWGKNWGESGYIR  192 (216)
T ss_dssp             HHHHHTTSCEEEEECCCSHHHHTCCSSEECCC-CCCCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTEEE
T ss_pred             HHHHhhcCCcceeeeeecccccccccCccccc-ccccCCcceeeeccccc-------cCCceEEEECCCCCccccCCEEE
Confidence            88889999999999886 57899999999754 45678999999999986       46899999999999999999999


Q ss_pred             cccccCc--cCCcCcCCcCCC
Q psy1664         335 IGCRPYE--IPCERYMNGSRS  353 (524)
Q Consensus       335 i~~~~~~--~~c~~~~~~~~~  353 (524)
                      |+|+..+  ..|++.+.+++|
T Consensus       193 i~~~~~~~~~~Cgi~~~~~~p  213 (216)
T d1cqda_         193 AERNIENPDGKCGITRFASYP  213 (216)
T ss_dssp             EECSCSSTTCGGGTTSSCEEE
T ss_pred             EEcCCCCCCCCCCccceeeee
Confidence            9998654  368887766544

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-47  Score=361.43  Aligned_cols=205  Identities=26%  Similarity=0.514  Sum_probs=161.9

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      .|++||||++    ++|+||||||.||||||||++++||++++++++  ..+.||+|+|++|... +.+|.||.+..+++
T Consensus         1 ~P~~~D~R~~----~~vtpV~dQg~cGsCwAfa~~~~le~~~~~~~~--~~~~~S~q~~~~c~~~-~~gc~G~~~~~~~~   73 (214)
T d1m6da_           1 APPEWDWRSK----GAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQG--TLLSLSEQELLDCDKM-DKACMGGLPSNAYS   73 (214)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCSS-SCTTBCCCHHHHHH
T ss_pred             CCCceeCCCC----CCCCCCccCCcCccHHHHHHHHHHHHHHHHHcC--CCcccCHHHhcccccc-CCccCCCcchhhHH
Confidence            3999999998    899999999999999999999999999999986  4689999999999753 67999999999999


Q ss_pred             HHHHhC-CccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHH
Q psy1664         177 YWVTTG-IVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETI  255 (524)
Q Consensus       177 ~~~~~G-i~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  255 (524)
                      |+++.| ++.|..|       ||...        ...|......                  ...+.........+.++|
T Consensus        74 ~~~~~g~~~~e~~~-------py~~~--------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~i  120 (214)
T d1m6da_          74 AIKNLGGLETEDDY-------SYQGH--------MQSCQFSAEK------------------AKVYIQDSVELSQNEQKL  120 (214)
T ss_dssp             HHHHHTCBCBTTTS-------CCCSS--------CCCCCCCGGG------------------CCBCCSEEEECCSCHHHH
T ss_pred             HHHhCCcccccccc-------cccCc--------cCcccccccc------------------cceeeecccccccCHHHH
Confidence            999987 5666666       98765        2223221100                  001111223445678999


Q ss_pred             HHHHHHcCCeEEEEEecccccccCCceEE--cCCC-CCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCc
Q psy1664         256 MREIFRHGPVEGSMTIYADMILYKTGIYK--HVAG-GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL  332 (524)
Q Consensus       256 k~~l~~~GPV~v~i~v~~~f~~Y~sGIy~--~~~~-~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy  332 (524)
                      |++|+++|||+++|.+. +|++|..|++.  .+.+ ...++|||+|||||++       .+++|||||||||++|||+||
T Consensus       121 k~~i~~~gpv~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~HaV~iVGyg~~-------~~~~ywivkNSWG~~WGd~Gy  192 (214)
T d1m6da_         121 AAWLAKRGPISVAINAF-GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQR-------SDVPFWAIKNSWGTDWGEKGY  192 (214)
T ss_dssp             HHHHHHHCCEEEEECTH-HHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHhcCCeEEEEEEE-ehhhccCCccccccCCCCCcccceeEEEEccccc-------CCceEEEEECCCCCccccCCE
Confidence            99999999999999986 55666666654  3333 3468999999999976       468999999999999999999


Q ss_pred             cccccccCccCCcCcCCcC
Q psy1664         333 FRIGCRPYEIPCERYMNGS  351 (524)
Q Consensus       333 ~ri~~~~~~~~c~~~~~~~  351 (524)
                      |||+|+.+  .|++...++
T Consensus       193 ~~i~~g~n--~cgI~~~~~  209 (214)
T d1m6da_         193 YYLHRGSG--ACGVNTMAS  209 (214)
T ss_dssp             EEEESSSC--GGGTTTTCE
T ss_pred             EEEEcCCC--cccccceee
Confidence            99999865  588876553

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-47  Score=361.15  Aligned_cols=210  Identities=26%  Similarity=0.507  Sum_probs=165.8

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      .|++||||++    ++|+||||||.||||||||++++||++++++++  ..+.||+|+|++|... ..+|.||....|++
T Consensus         1 ~P~~~DwR~~----~~vtpV~dQG~cGsCwAfa~~~~~e~~~~~~~~--~~~~lS~q~l~~c~~~-~~~c~G~~~~~a~~   73 (215)
T d2r6na1           1 APDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQ   73 (215)
T ss_dssp             CCSCEETTTT----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCGGGCCCHHHHHH
T ss_pred             CCCCEeCccC----CCCCCCccCccChhHHHHHHHHHHHHHHHHHhC--CCccchhhhhhhcccc-cCccCCcchhhHHH
Confidence            3999999998    899999999999999999999999999999986  4689999999999753 56899999999999


Q ss_pred             HHHHhC-CccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHH
Q psy1664         177 YWVTTG-IVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETI  255 (524)
Q Consensus       177 ~~~~~G-i~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  255 (524)
                      +++..| +.++..|       ||...        ...|.......              ....   .........+.++|
T Consensus        74 ~~~~~g~~~~~~~y-------~~~~~--------~~~~~~~~~~~--------------~~~~---~~~~~~~~~~~~~i  121 (215)
T d2r6na1          74 YVQKNRGIDSEDAY-------PYVGQ--------EESCMYNPTGK--------------AAKC---RGYREIPEGNEKAL  121 (215)
T ss_dssp             HHHHHTCEEBTTTS-------CCCSS--------CCCCCCCGGGE--------------EECC---CEEEECCTTCHHHH
T ss_pred             HHHhcCccccccCC-------Ccccc--------ccccccccccc--------------ceee---cceeeccccHHHHH
Confidence            999997 5666666       77543        22222111000              0000   00111223578999


Q ss_pred             HHHHHHcCCeEEEEEe-cccccccCCceEEcCCCCC-CCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcc
Q psy1664         256 MREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGP-LGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF  333 (524)
Q Consensus       256 k~~l~~~GPV~v~i~v-~~~f~~Y~sGIy~~~~~~~-~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~  333 (524)
                      |++|+++|||++.+.+ .++|+.|++||+....|.. .++|||+|||||++       .+.+|||||||||++|||+|||
T Consensus       122 k~~~~~~g~v~~~~~~~~~~f~~y~~gi~~~~~~~~~~~~Hav~iVGy~~~-------~~~~ywivrNSWG~~WGe~Gy~  194 (215)
T d2r6na1         122 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-------KGNKHWIIKNSWGENWGNKGYI  194 (215)
T ss_dssp             HHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCTTCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTEE
T ss_pred             HHhhcccccEEEEEEeeechhcccCCCcccCCCCCCCCCCeeEEEEEeecc-------CCCcEEEEEcCCCCCcccCCeE
Confidence            9999999999998865 4679999999998776654 68999999999986       4678999999999999999999


Q ss_pred             ccccccCccCCcCcCCcCCC
Q psy1664         334 RIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       334 ri~~~~~~~~c~~~~~~~~~  353 (524)
                      ||+|+... .|++.+.+.+|
T Consensus       195 ~i~~~~~n-~Cgi~~~~~~p  213 (215)
T d2r6na1         195 LMARNKNN-ACGIANLASFP  213 (215)
T ss_dssp             EEESSSSS-GGGTTSSCEEE
T ss_pred             EEEeCCCC-cCcccCccccc
Confidence            99998643 58887766544

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-47  Score=360.92  Aligned_cols=215  Identities=30%  Similarity=0.586  Sum_probs=170.3

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCC-CCCCCCCChHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC-GNGCQGGFHGKAW  175 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~-~~gC~GG~~~~a~  175 (524)
                      ||++||||++    ++||||||||.||||||||++++||++++++++  ..+.||+|+|++|.... +.+|+||++..|+
T Consensus         1 LP~~~DwR~~----~~vtpV~dQG~cGsCwAfA~~~~~e~~~~~~~~--~~~~lS~~~~~~~~~~~~~~~~~gg~~~~a~   74 (221)
T d1fh0a_           1 LPKSVDWRKK----GYVTPVKNQKQCGSCWAFSATGALEGQMFRKTG--KLVSLSEQNLVDCSRPQGNQGCNGGFMARAF   74 (221)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCGGGTCCGGGCCCHHHHH
T ss_pred             CCCCeeCCcC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHHcC--CCcccccceeEEeccccCCcccCCCchhhhh
Confidence            8999999998    899999999999999999999999999999986  45899999999997643 4589999999999


Q ss_pred             HHHHHhC-CccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHH
Q psy1664         176 KYWVTTG-IVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEET  254 (524)
Q Consensus       176 ~~~~~~G-i~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (524)
                      +++.+.| ++++..|       ||...        ...|.......              ......+   .......+++
T Consensus        75 ~~~~~~g~~~~~~~~-------p~~~~--------~~~~~~~~~~~--------------~~~~~~~---~~~~~~~~~~  122 (221)
T d1fh0a_          75 QYVKENGGLDSEESY-------PYVAV--------DEICKYRPENS--------------VAQDTGF---TVVAPGKEKA  122 (221)
T ss_dssp             HHHHHHTCEEBTTTS-------CCCSS--------CCCCCCCGGGE--------------EECCSCE---EECCTTCHHH
T ss_pred             hhhhhcCccccccCc-------Ccccc--------ccccccccccc--------------cccceee---eecCCcHHHH
Confidence            9999987 5666666       88754        22222111000              0001111   1233456889


Q ss_pred             HHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCC-CCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCc
Q psy1664         255 IMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGG-PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL  332 (524)
Q Consensus       255 ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~-~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy  332 (524)
                      +|++|+++|||++++.+. +.|+.|++||+..+.+. ..++|+|+|||||.+..   ++++.+|||||||||++|||+||
T Consensus       123 ~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~~~~~~~~~~~ha~~ivG~g~~~~---~~~~~~ywivrNSWG~~WGd~Gy  199 (221)
T d1fh0a_         123 LMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGA---NSDNSKYWLVKNSWGPEWGSNGY  199 (221)
T ss_dssp             HHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCSSCCCEEEEEEEEEESSS---CTTSSEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHhcCCceEEEEeccccccccCCCccccccccccCCcccEEEeeEeccCc---CCCCceEEEEEeCCCCCcccCCE
Confidence            999999999999999986 57999999999877654 45799999999997631   23678999999999999999999


Q ss_pred             cccccccCccCCcCcCCcCCC
Q psy1664         333 FRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       333 ~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      |||+|+... .|++.+.+.+|
T Consensus       200 ~~i~~~~~n-~CgI~~~~~yp  219 (221)
T d1fh0a_         200 VKIAKDKNN-HCGIATAASYP  219 (221)
T ss_dssp             EEEECSSSS-GGGTTTSCEEE
T ss_pred             EEEEeCCCC-ccccCCCcccc
Confidence            999998642 69998776655

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-46  Score=359.73  Aligned_cols=211  Identities=28%  Similarity=0.554  Sum_probs=167.6

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCC--CCCCCCCCChHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKD--CGNGCQGGFHGKA  174 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~--~~~gC~GG~~~~a  174 (524)
                      ||++||||+.    ++|+||||||.||||||||++++||++++|+++.  ...||+|+|++|...  ...||+||++..|
T Consensus         1 LP~~~Dwr~~----~~vtpV~dQG~cGsCwAfA~~~~~e~~~~i~~~~--~~~~S~~~~~~~~~~~~~~~gc~gg~~~~a   74 (217)
T d2h7ja1           1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGK--LVSLSAQNLVDCSTEKYGNKGCNGGFMTTA   74 (217)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSC--CCCBCHHHHHHHSCGGGTCCTTBCCCHHHH
T ss_pred             CCCcccCCcC----CCCCCCccCCCchHHHHHHHHHHHHHHHHHHhCC--CCcccHHHhhhhhcccccCCCCCCCcccce
Confidence            8999999998    8899999999999999999999999999999874  578999999999753  3469999999999


Q ss_pred             HHHHHHh-CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHH
Q psy1664         175 WKYWVTT-GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEE  253 (524)
Q Consensus       175 ~~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (524)
                      +.++... |+++++.|       ||...        ...|......              .......+   .......++
T Consensus        75 ~~~~~~~~g~~~~~~~-------p~~~~--------~~~~~~~~~~--------------~~~~~~~~---~~~~~~~~~  122 (217)
T d2h7ja1          75 FQYIIDNKGIDSDASY-------PYKAM--------DQKCQYDSKY--------------RAATCSKY---TELPYGRED  122 (217)
T ss_dssp             HHHHHHHTCEEBTTTS-------CCCSS--------CCCCCCCGGG--------------EEECCCEE---EECCTTCHH
T ss_pred             eeehhhcccccccccC-------CCccc--------cccccccccc--------------ccceeeee---eccCccHHH
Confidence            9887765 77777777       88654        2222211100              00001111   112235688


Q ss_pred             HHHHHHHHcCCeEEEEEe-cccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCc
Q psy1664         254 TIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGL  332 (524)
Q Consensus       254 ~ik~~l~~~GPV~v~i~v-~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy  332 (524)
                      .|+++|+..|||++++.. ..+|..|++|||..+.+...++|||+|||||++       .+++|||||||||++|||+||
T Consensus       123 ~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi~~~~~~~~~~~Hav~iVGy~~~-------~~~~ywivrNSWG~~WG~~Gy  195 (217)
T d2h7ja1         123 VLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-------NGKEYWLVKNSWGHNFGEEGY  195 (217)
T ss_dssp             HHHHHHHHTCCEEEEECCCSHHHHTCCSSCBCCTTCCSCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHhhcCceEEEEEeeehhhhcccCCcceeCCCCCCCCCeEEEEEecccC-------CCceEEEEEcCCCCCcccCCE
Confidence            999999999999999864 468999999999988888889999999999987       468999999999999999999


Q ss_pred             cccccccCccCCcCcCCcCCC
Q psy1664         333 FRIGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       333 ~ri~~~~~~~~c~~~~~~~~~  353 (524)
                      |||+|+... .|++.+.+.+|
T Consensus       196 ~~i~~~~~n-~cgi~~~~~~p  215 (217)
T d2h7ja1         196 IRMARNKGN-HCGIASFPSYP  215 (217)
T ss_dssp             EEEECSSSS-GGGTTTSCEEE
T ss_pred             EEEecCCCC-cCCccccccce
Confidence            999998632 68887655544

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=100.00  E-value=5.4e-47  Score=362.18  Aligned_cols=211  Identities=28%  Similarity=0.536  Sum_probs=165.4

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCC-CCCCCCCChHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDC-GNGCQGGFHGKAW  175 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~-~~gC~GG~~~~a~  175 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++++++  ..+.||+|+|++|.... +.+|.||....++
T Consensus         1 LP~~~Dwr~~----~~itpV~dQg~cGsCwAfA~~~~~e~~~~~~~~--~~~~lS~q~~~~c~~~~~~~~~~G~~~~~~~   74 (218)
T d1aeca_           1 LPSYVDWRSA----GAVVDIKSQGECGGCWAFSAIATVEGINKIVTG--VLISLSEQELIDCGRTQNTRGCNGGYITDGF   74 (218)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCCBTTBCTTBCCCHHHHH
T ss_pred             CCCceeCCCC----CCCCCCccCCCChhHHHHHHHHHHHHHHHHhcC--CCcchhhhhhhhhccccCCcccCCCcccccc
Confidence            8999999998    889999999999999999999999999999986  46899999999997653 4588999999999


Q ss_pred             HHHHHhC-CccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHH
Q psy1664         176 KYWVTTG-IVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEET  254 (524)
Q Consensus       176 ~~~~~~G-i~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (524)
                      .++++.| ++.|..|       ||...        ...|......         ..+.        ..........+.+.
T Consensus        75 ~~~~~~g~v~~e~~y-------p~~~~--------~~~~~~~~~~---------~~~~--------~~~~~~~~~~~~~~  122 (218)
T d1aeca_          75 QFIINNGGINTEENY-------PYTAQ--------DGECNVDLQN---------EKYV--------TIDTYENVPYNNEW  122 (218)
T ss_dssp             HHHHHHTCBCBTTTS-------CCCSS--------CCCCCHHHHH---------CCCB--------CCCEEEECCSSCHH
T ss_pred             eeehhCceecCcccc-------Ccccc--------cCccceeccc---------cccc--------eecccccccccHHH
Confidence            9999997 6777667       88764        2222211000         0000        00111223456789


Q ss_pred             HHHHHHHcCCeEEEEEeccccc-ccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcc
Q psy1664         255 IMREIFRHGPVEGSMTIYADMI-LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF  333 (524)
Q Consensus       255 ik~~l~~~GPV~v~i~v~~~f~-~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~  333 (524)
                      |+++|+.+|||+++|.+..+|. .+.+|++..+ +...++|||+|||||++       .+++|||||||||++|||+|||
T Consensus       123 ~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~~~-~~~~~~Hav~iVGyg~~-------~~~~ywivrNSWG~~WGd~Gy~  194 (218)
T d1aeca_         123 ALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGP-CGTAIDHAVTIVGYGTE-------GGIDYWIVKNSWDTTWGEEGYM  194 (218)
T ss_dssp             HHHHHHHHSCEEEEECCCSHHHHHCCSSEECCS-CCSSCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTEE
T ss_pred             HHHHHhhcCCceeEEEecchhhhcCCCCccccc-ccccCCceeEEEEEecc-------CCeEEEEEEcCCCCCcccCCEE
Confidence            9999999999999999987754 5566666554 45667999999999986       4689999999999999999999


Q ss_pred             ccccccCc-cCCcCcCCcCCC
Q psy1664         334 RIGCRPYE-IPCERYMNGSRS  353 (524)
Q Consensus       334 ri~~~~~~-~~c~~~~~~~~~  353 (524)
                      ||+|+... ..|++.+.+++|
T Consensus       195 ~i~~~~~~~~~Cgi~~~~~~~  215 (218)
T d1aeca_         195 RILRNVGGAGTCGIATMPSYP  215 (218)
T ss_dssp             EEECCCSTTCGGGTTSSCEEE
T ss_pred             EEEeCCCCCcccccCCcceec
Confidence            99997543 369988777654

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=5.1e-46  Score=353.51  Aligned_cols=206  Identities=29%  Similarity=0.494  Sum_probs=162.9

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++++++  ....||+|++++|... ..+|.|+.+..|++
T Consensus         1 LP~~~D~R~~----~~v~pV~dQg~cGsCwAfa~~~~~e~~~~i~~~--~~~~~S~q~~~~c~~~-~~g~~g~~~~~a~~   73 (212)
T d1khqa_           1 IPEYVDWRQK----GAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTG--NLNEYSEQELLDCDRR-SYGCNGGYPWSALQ   73 (212)
T ss_dssp             CCSCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCBCHHHHHH
T ss_pred             CCCCeeCCCC----CCCCCcccCCcCchHHHHHHHHHHHHHHHHHcC--CCcccCHHHhhccccc-cCcccccccccccc
Confidence            8999999998    889999999999999999999999999999986  4588999999999753 56899999999999


Q ss_pred             HHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHH
Q psy1664         177 YWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM  256 (524)
Q Consensus       177 ~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik  256 (524)
                      ++.+.|+++|..+       ||...        ...|........             ....    ............++
T Consensus        74 ~~~~~g~~~~~~~-------p~~~~--------~~~~~~~~~~~~-------------~~~~----~~~~~~~~~~~~~~  121 (212)
T d1khqa_          74 LVAQYGIHYRNTY-------PYEGV--------QRYCRSREKGPY-------------AAKT----DGVRQVQPYNEGAL  121 (212)
T ss_dssp             HHHHTCBCBTTTS-------CCCSS--------CCCCCTTTTCSC-------------SBCC----CEEEECCTTCHHHH
T ss_pred             ccccccccccccC-------Ccccc--------cCcccccccccc-------------eeee----eeeeeeccccHHHH
Confidence            9999999998888       88764        222221111000             0000    01122334456778


Q ss_pred             HHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcccc
Q psy1664         257 REIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI  335 (524)
Q Consensus       257 ~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri  335 (524)
                      ++++.+|||++++.+. +.|..|++|+|..+.+ ..++|||+|||||+           +|||||||||++|||+|||||
T Consensus       122 ~~~~~~~pv~~~~~~~~~~f~~~~~g~~~~~~~-~~~~Hav~iVGyg~-----------~ywivrNSWG~~WGd~Gy~~i  189 (212)
T d1khqa_         122 LYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCG-NKVDHAVAAVGYGP-----------NYILIKNSWGTGWGENGYIRI  189 (212)
T ss_dssp             HHHHHHSCEEEEECCCSHHHHTCCSSEECCSCC-SCCCEEEEEEEEET-----------TEEEEECSBCTTSTBTTEEEE
T ss_pred             HHHHhcCCcEEEEEeecchhcccccCccccccc-cccCeEEEecccCC-----------cEEEEEcCCCCCcccCCEEEE
Confidence            8888889998888865 6799999999987654 46899999999985           499999999999999999999


Q ss_pred             ccccCc--cCCcCcCCcCCC
Q psy1664         336 GCRPYE--IPCERYMNGSRS  353 (524)
Q Consensus       336 ~~~~~~--~~c~~~~~~~~~  353 (524)
                      +|+...  ..||+.+.+.+|
T Consensus       190 ~~~~~~~~~~Cgi~~~~~~p  209 (212)
T d1khqa_         190 KRGTGNSYGVCGLYTSSFYP  209 (212)
T ss_dssp             ECCSCCTTCGGGTTSCCEEE
T ss_pred             EcCCCCCCCcCCcccEeeee
Confidence            998654  358887766444

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=1.6e-45  Score=353.37  Aligned_cols=213  Identities=27%  Similarity=0.547  Sum_probs=160.3

Q ss_pred             CCCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHH
Q psy1664          96 ELPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAW  175 (524)
Q Consensus        96 ~lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~  175 (524)
                      .||++||||++    ++|+||||||.||||||||++++||++++++++  ....||+|+|++|......+|.||....|+
T Consensus         1 ~lP~~~Dwr~~----~~itpV~dQG~cGsCwAfA~~~~~e~~~~~~~~--~~~~~S~q~l~~c~~~~~~~~~G~~~~~a~   74 (224)
T d1s4va_           1 TVPASVDWRKK----GAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTN--KLVSLSEQELVDCDTDQNQGCNGGLMDYAF   74 (224)
T ss_dssp             CCCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCCSSCCTTBCBCHHHHH
T ss_pred             CCCCceeCCCC----CCCCCCccCCcCchHHHHHHHHHHHHHHHHhcC--CCCccchhhhhhccccccccCCCCchhhHh
Confidence            48999999998    899999999999999999999999999999986  468999999999987666789999999999


Q ss_pred             HHHHHhCC-ccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHH
Q psy1664         176 KYWVTTGI-VSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEET  254 (524)
Q Consensus       176 ~~~~~~Gi-~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (524)
                      .++.+.|. +.|..+       ||...        .+.|...        .......        ...........+.+.
T Consensus        75 ~~~~~~g~~~~e~~~-------~~~~~--------~~~~~~~--------~~~~~~~--------~~~~~~~~~~~~~~~  123 (224)
T d1s4va_          75 EFIKQRGGITTEANY-------PYEAY--------DGTCDVS--------KENAPAV--------SIDGHENVPENDENA  123 (224)
T ss_dssp             HHHHHHTCBCBTTTS-------CCCSS--------CCCCCHH--------HHTCCCB--------CCCEEEECCTTCHHH
T ss_pred             hhHhhcCceeecccc-------cccCc--------CCccccc--------cccccce--------eecccccccCccHHH
Confidence            99999864 444333       66543        1211100        0000000        011111223345677


Q ss_pred             HHHHHHHcCCeEEEEEec-ccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcc
Q psy1664         255 IMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF  333 (524)
Q Consensus       255 ik~~l~~~GPV~v~i~v~-~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~  333 (524)
                      ||++|.. +||++++.+. ++|..|.+|+|... +...++|||+|||||++.      ++++|||||||||++||++|||
T Consensus       124 ~k~~l~~-~pv~~~~~~~~~~~~~y~~g~~~~~-~~~~~~Hav~iVGy~~~~------~g~~ywiikNSWG~~WG~~Gy~  195 (224)
T d1s4va_         124 LLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS-CGTELDHGVAIVGYGTTI------DGTKYWTVKNSWGPEWGEKGYI  195 (224)
T ss_dssp             HHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-CCCCCCEEEEEEEEEECT------TSCEEEEEECSBCTTSTBTTEE
T ss_pred             HHHHHhc-CCceEEEEecchhhhhccCCCccCc-ccccCCcceEEEeccccc------CCceEEEEEcCCCCccccCceE
Confidence            7776665 6777777765 77999999999754 445679999999999864      5689999999999999999999


Q ss_pred             ccccccCc--cCCcCcCCcCCC
Q psy1664         334 RIGCRPYE--IPCERYMNGSRS  353 (524)
Q Consensus       334 ri~~~~~~--~~c~~~~~~~~~  353 (524)
                      ||+|+...  ..|++...+.+|
T Consensus       196 ~i~~g~~~~~n~CgI~~~~~yp  217 (224)
T d1s4va_         196 RMERGISDKEGLCGIAMEASYP  217 (224)
T ss_dssp             EEECSCSSTTCGGGTTSSCEEE
T ss_pred             EEECCCCCCCCcCCccceeeee
Confidence            99997543  368887666544

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.4e-45  Score=351.64  Aligned_cols=208  Identities=26%  Similarity=0.508  Sum_probs=164.1

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      .|++||||++    ++|+||||||.||||||||++++||++++|+++  ....||+|+|++|+. .+.+|.|+....++.
T Consensus         1 ~P~~~DwR~~----~~vtpV~dQg~cGsCwAfa~~~~le~~~~i~~~--~~~~ls~q~l~~c~~-~~~~~~g~~~~~~~~   73 (215)
T d1me4a_           1 APAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGH--PLTNLSEQMLVSCDK-TDSGCSGGLMNNAFE   73 (215)
T ss_dssp             CCSEEEGGGT----TCCCCCCBCTTSSCHHHHHHHHHHHHHHHHTTS--CCCCBCHHHHHHHCT-TSCGGGCCCHHHHHH
T ss_pred             CCCCeeCCCC----CCCCCCccCCcCccHHHHHHHHHHHHHHHHhcC--CCcccchhhhhhhhc-CCCCCCCCcccccce
Confidence            3999999998    899999999999999999999999999999876  458899999999975 467889999888888


Q ss_pred             HHHHh---CCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHH
Q psy1664         177 YWVTT---GIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEE  253 (524)
Q Consensus       177 ~~~~~---Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (524)
                      ++...   |++++.+|       ||...        ...|........          ...+ ..    .....+..+.+
T Consensus        74 ~~~~~~~~~~~~~~~y-------py~~~--------~~~~~~~~~~~~----------~~~~-~~----~~~~~~~~~~~  123 (215)
T d1me4a_          74 WIVQENNGAVYTEDSY-------PYASG--------EGISPPCTTSGH----------TVGA-TI----TGHVELPQDEA  123 (215)
T ss_dssp             HHHHHSTTEEEBTTTS-------CCCCT--------TSCCCCCCCSSC----------CEEE-EC----CEEEECCSCHH
T ss_pred             eeeeccCCccccCccc-------Ccccc--------cccccccccccc----------ccce-Ee----eeeeeccccHH
Confidence            88654   57787777       98754        233322111100          0000 00    11234567889


Q ss_pred             HHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcc
Q psy1664         254 TIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLF  333 (524)
Q Consensus       254 ~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~  333 (524)
                      .||++|+++|||++++.++ .|+.|++++|.... ...++|||+|||||++       .+++|||||||||++|||+|||
T Consensus       124 ~ik~~i~~~gpv~~~~~~~-~~~~~~~~~~~~~~-~~~~~Hav~IVGyg~~-------~~~~ywivrNSWG~~WGd~Gy~  194 (215)
T d1me4a_         124 QIAAWLAVNGPVAVAVDAS-SWMTYTGGVMTSCV-SEQLDHGVLLVGYNDS-------AAVPYWIIKNSWTTQWGEEGYI  194 (215)
T ss_dssp             HHHHHHHHHCCEEEEECCT-TGGGCCSSEECSCC-CSCCCEEEEEEEEESS-------SSSCEEEEECSBCTTSTBTTEE
T ss_pred             HHHHHHHhcCceeEEEEee-eecccccccccCCc-cccceeEEEEEEcccc-------CCceEEEEEcCCCCCcccCCEE
Confidence            9999999999999999986 58889999987654 4567999999999987       4689999999999999999999


Q ss_pred             ccccccCccCCcCcCCcCC
Q psy1664         334 RIGCRPYEIPCERYMNGSR  352 (524)
Q Consensus       334 ri~~~~~~~~c~~~~~~~~  352 (524)
                      ||+|+.+  .|++....++
T Consensus       195 ~i~~g~n--~cgI~~~~~~  211 (215)
T d1me4a_         195 RIAKGSN--QCLVKEEASS  211 (215)
T ss_dssp             EEESSSC--GGGTTSSEEE
T ss_pred             EEECCCC--ccccCCceee
Confidence            9999865  6888765543

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=3.1e-45  Score=347.39  Aligned_cols=203  Identities=27%  Similarity=0.473  Sum_probs=160.9

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++++++  ..+.||+|+|++|.. .+.+|.||.+..++.
T Consensus         1 LP~~~D~R~~----~~vtpV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~~c~~-~~~~~~g~~~~~~~~   73 (208)
T d1o0ea_           1 LPEQIDWRKK----GAVTPVKNQGSCGSCWAFSTVSTVESINQIRTG--NLISLSEQELVDCDK-KNHGCLGGAFVFAYQ   73 (208)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSCTTBCCCHHHHHH
T ss_pred             CCCcccCccC----CCCCCcccCCCCccHHHHHHHHHHHHHHHHHhC--CCCCcCHHHhhhhcc-CCCCCCCccchhhhh
Confidence            8999999998    889999999999999999999999999999986  458999999999964 467999999999999


Q ss_pred             HHHHhCC-ccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHH
Q psy1664         177 YWVTTGI-VSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETI  255 (524)
Q Consensus       177 ~~~~~Gi-~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  255 (524)
                      ++...|. .++.++       ||...        ...|.......                ....    ...++.+.+.+
T Consensus        74 ~~~~~g~~~~~~~~-------p~~~~--------~~~~~~~~~~~----------------~~~~----~~~~~~~~~~~  118 (208)
T d1o0ea_          74 YIINNGGIDTQANY-------PYKAV--------QGPCQAASKVV----------------SIDG----YNGVPFCNEXA  118 (208)
T ss_dssp             HHHHHTCBCBTTTS-------CCCSS--------CCCCCCCCCCB----------------CCCE----EEECCTTCHHH
T ss_pred             hhhhcCccccccCC-------CCccc--------CCCccCccccc----------------cccc----ccccccchhhH
Confidence            9998875 455555       88754        44554322110                0011    12334445566


Q ss_pred             HHHHHHcCCeEEEEE-ecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCccc
Q psy1664         256 MREIFRHGPVEGSMT-IYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFR  334 (524)
Q Consensus       256 k~~l~~~GPV~v~i~-v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~r  334 (524)
                      ++.++..|||++++. +...|..|++|||..+.+ ..++|||+|||||+           +|||||||||++|||+||||
T Consensus       119 ~~~~~~~~pv~~~~~~~~~~f~~~~~gi~~~~~~-~~~~Hav~iVGy~~-----------~ywiirNSWG~~WGd~Gy~~  186 (208)
T d1o0ea_         119 LKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCG-TKLNHGVTIVGYQA-----------NYWIVRNSWGRYWGEKGYIR  186 (208)
T ss_dssp             HHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCC-SCCCEEEEEEEECS-----------SEEEEECSBCTTSTBTTEEE
T ss_pred             HHHHhhcCCceEEEEecchhhcccccCccccccc-ccCCcEEEEEeeec-----------ceEEEECCCCCCcccCCeEE
Confidence            677777788887776 457899999999987644 45799999999984           49999999999999999999


Q ss_pred             cccccCccCCcCcCCcCCC
Q psy1664         335 IGCRPYEIPCERYMNGSRS  353 (524)
Q Consensus       335 i~~~~~~~~c~~~~~~~~~  353 (524)
                      |+|......|++.+.+.+|
T Consensus       187 I~~~~~~~~Cgi~~~~~~p  205 (208)
T d1o0ea_         187 MLRVGGCGLCGIARLPYYP  205 (208)
T ss_dssp             EECCSTTCGGGTTSSCEEE
T ss_pred             EEccCCCCccCccccceec
Confidence            9997766679998777655

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=3.8e-45  Score=348.67  Aligned_cols=209  Identities=27%  Similarity=0.492  Sum_probs=163.6

Q ss_pred             CCCccccccCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHH
Q psy1664          97 LPEGFDARINWPYCPTIQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWK  176 (524)
Q Consensus        97 lP~s~DwR~~~~~~g~vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~  176 (524)
                      ||++||||++    ++|+||||||.||||||||++++||++++++++  ..+.||+|+|++|.. ...+|.||....|++
T Consensus         1 LP~s~Dwr~~----~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~~c~~-~~~~~~G~~~~~a~~   73 (215)
T d1iwda_           1 LPSFVDWRSK----GAVNSIKNQKQCGSCWAFSAVAAVESINKIRTG--QLISLSEQELVDCDT-ASHGCNGGWMNNAFQ   73 (215)
T ss_dssp             CCSCEEGGGG----TCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSCTTBCCCHHHHHH
T ss_pred             CCCceeCCcC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHhcC--CCcccChhhheeccc-CCCCCCCcchhhHHH
Confidence            8999999998    889999999999999999999999999999986  468999999999965 467999999999999


Q ss_pred             HHHHhCCccCCccCCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHH
Q psy1664         177 YWVTTGIVSGGTYASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIM  256 (524)
Q Consensus       177 ~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik  256 (524)
                      ++.++|.+.+..+      .||...        ...|.......               .....    ...+..+.++++
T Consensus        74 ~~~~~g~~~~~~~------~~~~~~--------~~~~~~~~~~~---------------~~~~~----~~~~~~~~~~~~  120 (215)
T d1iwda_          74 YIITNGGIDTQQN------YPYSAV--------QGSCKPYRLRV---------------VSING----FQRVTRNNESAL  120 (215)
T ss_dssp             HHHHHTCBCBTTT------SCCCSS--------CCCCCTTCCCC---------------BCCCE----EEECCTTCHHHH
T ss_pred             HHHhcCeeccccC------CCcccc--------cccccccccce---------------eEecc----ccccCccHHHHH
Confidence            9999986654333      266543        22222111110               01111    123445567788


Q ss_pred             HHHHHcCCeEEEEEeccc-ccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcccc
Q psy1664         257 REIFRHGPVEGSMTIYAD-MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRI  335 (524)
Q Consensus       257 ~~l~~~GPV~v~i~v~~~-f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri  335 (524)
                      ++|+..+||++++.+..+ |..++.|+|..+. ...++|||+|||||++       .+++|||||||||++|||+|||||
T Consensus       121 ~~~~~~~pv~~~~~~~~~~~~~~~~g~~~~~~-~~~~~Hav~iVGyg~~-------~~~~ywiirNSWG~~WGd~Gy~~I  192 (215)
T d1iwda_         121 QSAVASQPVSVTVEAAGAPFQHYSSGIFTGPC-GTAQNHGVVIVGYGTQ-------SGKNYWIVRNSWGQNWGNQGYIWM  192 (215)
T ss_dssp             HHHHHHSCEEEEECCCSHHHHTCCSSEECCCC-CCCCCEEEEEEEEEEE-------TTEEEEEEECSBCTTSTBTTEEEE
T ss_pred             HHHHhcCCccceeeecchhhhccccCcccccc-cccccceEEEEEeecC-------CCceEEEEECCCCcccccCCEEEE
Confidence            888999999999998755 5667888987764 4557999999999986       478999999999999999999999


Q ss_pred             ccccCc--cCCcCcCCcCCC
Q psy1664         336 GCRPYE--IPCERYMNGSRS  353 (524)
Q Consensus       336 ~~~~~~--~~c~~~~~~~~~  353 (524)
                      +|+...  ..||+...+++|
T Consensus       193 ~~~~~~~~~~CGi~~~~~~p  212 (215)
T d1iwda_         193 ERNVASSAGLCGIAQLPSYP  212 (215)
T ss_dssp             ECSCSSTTCGGGTTSSCEEE
T ss_pred             ECCCCCCCCcCCccccceee
Confidence            998754  358887766554

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.5e-26  Score=225.92  Aligned_cols=103  Identities=32%  Similarity=0.645  Sum_probs=93.1

Q ss_pred             EEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCC
Q psy1664         388 YSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT  467 (524)
Q Consensus       388 ~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~  467 (524)
                      +....+.+.||++|+++|||+++|.+..+|++|++|||.++++...++|||+|||||++.       +.+|||||||||+
T Consensus       165 ~~~~~~~e~ik~~l~~~GPv~v~~~~~~~f~~y~~Gi~~~~~~~~~~~HAV~IVGyg~~~-------g~~ywivrNSWG~  237 (275)
T d1deua_         165 YGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISD-------GTEYWIVRNSWGE  237 (275)
T ss_dssp             EEEECSHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEECBCCSCCCCCEEEEEEEEEEET-------TEEEEEEECSBCT
T ss_pred             eeecCcHHHHHHHHHhCCCcEEEEEeccchhccCCCcccCccccccCCeEEEEEEEeccC-------CcEEEEEECCCCC
Confidence            333456789999999999999999999899999999998887777799999999999887       8899999999999


Q ss_pred             CCCCCcEEEEEeCCCccC--------ccccceecccee
Q psy1664         468 NWGENGLFRIVRGQNECG--------IEADITAGLPKI  497 (524)
Q Consensus       468 ~WG~~Gy~~i~~g~~~cg--------i~~~~~~~~p~~  497 (524)
                      +||++|||||+|+.+.||        ||+.++++.|.|
T Consensus       238 ~WGd~Gyf~I~~~~~~~~~~~~~~~~ie~~~~~~~p~~  275 (275)
T d1deua_         238 PWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV  275 (275)
T ss_dssp             TSTBTTEEEEECTTHHHHTGGGTBTTTTSCEEEEEECC
T ss_pred             CcccCCEEEEECCCCCCCccccccccccCccEecCCcC
Confidence            999999999999976655        999999999975

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.92  E-value=1.9e-25  Score=211.43  Aligned_cols=100  Identities=26%  Similarity=0.605  Sum_probs=88.1

Q ss_pred             EEEEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCC
Q psy1664         386 IAYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSF  465 (524)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSW  465 (524)
                      ....+..+.+.||.+|+++|||++++.+. .|..|+++++..+.. ..++|||+|||||++.       +++||||||||
T Consensus       114 ~~~~~~~~~~~ik~~i~~~gpv~~~~~~~-~~~~~~~~~~~~~~~-~~~~Hav~IVGyg~~~-------~~~ywivrNSW  184 (215)
T d1me4a_         114 GHVELPQDEAQIAAWLAVNGPVAVAVDAS-SWMTYTGGVMTSCVS-EQLDHGVLLVGYNDSA-------AVPYWIIKNSW  184 (215)
T ss_dssp             EEEECCSCHHHHHHHHHHHCCEEEEECCT-TGGGCCSSEECSCCC-SCCCEEEEEEEEESSS-------SSCEEEEECSB
T ss_pred             eeeeccccHHHHHHHHHhcCceeEEEEee-eecccccccccCCcc-ccceeEEEEEEccccC-------CceEEEEEcCC
Confidence            34456788999999999999999999986 588999999976544 4579999999999987       88999999999


Q ss_pred             CCCCCCCcEEEEEeCCCccCccccceecc
Q psy1664         466 NTNWGENGLFRIVRGQNECGIEADITAGL  494 (524)
Q Consensus       466 G~~WG~~Gy~~i~~g~~~cgi~~~~~~~~  494 (524)
                      |++||++|||||+||.|.||||+++.+++
T Consensus       185 G~~WGd~Gy~~i~~g~n~cgI~~~~~~~~  213 (215)
T d1me4a_         185 TTQWGEEGYIRIAKGSNQCLVKEEASSAV  213 (215)
T ss_dssp             CTTSTBTTEEEEESSSCGGGTTSSEEEEE
T ss_pred             CCCcccCCEEEEECCCCccccCCceeeEe
Confidence            99999999999999999999999976543

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9e-26  Score=226.27  Aligned_cols=105  Identities=29%  Similarity=0.660  Sum_probs=89.5

Q ss_pred             EEcCCCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCC-CccCeeEEEeeecCCCCCCCccCCccEEEEEcCC
Q psy1664         388 YSLPANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGG-PLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSF  465 (524)
Q Consensus       388 ~~~~~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~-~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSW  465 (524)
                      .....++++|+++|+++|||+++|.+. .+|++|++|||..+.+. ..++|+|+|||||.+.   .++.+++||||||||
T Consensus       209 ~~~~~~~~~l~~~l~~~gpv~v~i~~~~~~f~~y~~Gi~~~~~c~~~~~nHaV~iVGyG~d~---~~~~g~~YWIikNSW  285 (316)
T d1cs8a_         209 VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES---TESDNNKYWLVKNSW  285 (316)
T ss_dssp             EECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCTTCCSSCCCEEEEEEEEEEEC---CSSCCEEEEEEECSB
T ss_pred             ccccCcHHHHHHHHHHhCCeEEEEEeccchhccccCCcccCCCCCCCcCCEEEEEEEEcccc---cCCCCCeEEEEEeCC
Confidence            456778999999999999999999984 57999999999876543 4689999999999763   122378999999999


Q ss_pred             CCCCCCCcEEEEEeCC-CccCccccceecccee
Q psy1664         466 NTNWGENGLFRIVRGQ-NECGIEADITAGLPKI  497 (524)
Q Consensus       466 G~~WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~~  497 (524)
                      |++||++|||||+||. |.|||++.++  +|+|
T Consensus       286 G~~WGe~GY~ri~r~~~n~CGI~~~~~--yP~v  316 (316)
T d1cs8a_         286 GEEWGMGGYVKMAKDRRNHCGIASAAS--YPTV  316 (316)
T ss_dssp             CTTSTBTTEEEEECSSSSGGGTTTSCE--EECC
T ss_pred             CCCcccCCEEEEeeCCCCcCccCCeee--eeeC
Confidence            9999999999999985 8999999954  6764

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.2e-25  Score=209.20  Aligned_cols=98  Identities=30%  Similarity=0.628  Sum_probs=88.0

Q ss_pred             CCCHHHHHHHHHhCCCEEEEEec-ccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCC
Q psy1664         391 PANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNW  469 (524)
Q Consensus       391 ~~~~~~~~~~~~~~gPv~~~~~~-~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~W  469 (524)
                      ...+..|+++|+..|||++++.. ..+|..|++|||..+++...++|||+|||||++.       +++|||||||||++|
T Consensus       118 ~~~~~~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi~~~~~~~~~~~Hav~iVGy~~~~-------~~~ywivrNSWG~~W  190 (217)
T d2h7ja1         118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLN-------GKEYWLVKNSWGHNF  190 (217)
T ss_dssp             TTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSCBCCTTCCSCCCEEEEEEEEEEET-------TEEEEEEECSBCTTS
T ss_pred             ccHHHHHHHHhhcCceEEEEEeeehhhhcccCCcceeCCCCCCCCCeEEEEEecccCC-------CceEEEEEcCCCCCc
Confidence            45789999999999999999864 5679999999998887777789999999999887       889999999999999


Q ss_pred             CCCcEEEEEeCC-CccCccccceecccee
Q psy1664         470 GENGLFRIVRGQ-NECGIEADITAGLPKI  497 (524)
Q Consensus       470 G~~Gy~~i~~g~-~~cgi~~~~~~~~p~~  497 (524)
                      |++|||||+||. |.||||++++  +|.|
T Consensus       191 G~~Gy~~i~~~~~n~cgi~~~~~--~p~~  217 (217)
T d2h7ja1         191 GEEGYIRMARNKGNHCGIASFPS--YPEI  217 (217)
T ss_dssp             TBTTEEEEECSSSSGGGTTTSCE--EEEC
T ss_pred             ccCCEEEEecCCCCcCCcccccc--ceeC
Confidence            999999999997 9999999854  7764

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.4e-25  Score=208.18  Aligned_cols=101  Identities=28%  Similarity=0.660  Sum_probs=85.0

Q ss_pred             EEEcCCCHHHHHHHHHhCCCEEEEEecccccccccccEEe--CC-CCCCccCeeEEEeeecCCCCCCCccCCccEEEEEc
Q psy1664         387 AYSLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYK--HV-AGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVAN  463 (524)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~--~~-~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~N  463 (524)
                      ......++++||++|+++|||+++|.+. +|.+|..|++.  .+ +....++|||+|||||++.       +++||||||
T Consensus       110 ~~~~~~~~~~ik~~i~~~gpv~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~HaV~iVGyg~~~-------~~~ywivkN  181 (214)
T d1m6da_         110 SVELSQNEQKLAAWLAKRGPISVAINAF-GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRS-------DVPFWAIKN  181 (214)
T ss_dssp             EEECCSCHHHHHHHHHHHCCEEEEECTH-HHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEET-------TEEEEEEEC
T ss_pred             ccccccCHHHHHHHHHhcCCeEEEEEEE-ehhhccCCccccccCCCCCcccceeEEEEcccccC-------CceEEEEEC
Confidence            4455678999999999999999999986 45656665543  22 3445689999999999887       889999999


Q ss_pred             CCCCCCCCCcEEEEEeCCCccCccccceeccc
Q psy1664         464 SFNTNWGENGLFRIVRGQNECGIEADITAGLP  495 (524)
Q Consensus       464 SWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p  495 (524)
                      |||++||++|||||+||.|.|||++.++++++
T Consensus       182 SWG~~WGd~Gy~~i~~g~n~cgI~~~~~~~~~  213 (214)
T d1m6da_         182 SWGTDWGEKGYYYLHRGSGACGVNTMASSAVV  213 (214)
T ss_dssp             SBCTTSTBTTEEEEESSSCGGGTTTTCEEEEC
T ss_pred             CCCCccccCCEEEEEcCCCcccccceeeEEec
Confidence            99999999999999999999999999877655

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.2e-24  Score=209.27  Aligned_cols=95  Identities=49%  Similarity=0.998  Sum_probs=85.2

Q ss_pred             ecCCCHHHHHHHHHHcCCeEEEEEecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCc
Q psy1664         247 SLPANEETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTN  326 (524)
Q Consensus       247 ~~~~~~~~ik~~l~~~GPV~v~i~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~  326 (524)
                      .....++.||++|+++|||+++|.++++|+.|++||+..++....++|||+|||||++       ++.+|||||||||++
T Consensus       153 ~~~~~~~~ik~~l~~~gpv~~~~~~~~~f~~y~~gi~~~~~~~~~~~Hav~IVGyg~~-------~g~~ywIvkNSWG~~  225 (254)
T d1gmya_         153 SVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE-------NGTPYWLVANSWNTD  225 (254)
T ss_dssp             ECCSCHHHHHHHHHHHCCEEEEEEEEGGGTTCCSSEECCCSCCEEEEEEEEEEEEEEE-------TTEEEEEEECSBCTT
T ss_pred             ccccHHHHHHHHHHHcCCEEEEEEeechhhhccCCccccccccccccEEEEEEEEecc-------CCceEEEEEcCCCCC
Confidence            4456789999999999999999999999999999999888777778999999999976       468999999999999


Q ss_pred             ccccCccccccccCccCCcCcCCc
Q psy1664         327 WGENGLFRIGCRPYEIPCERYMNG  350 (524)
Q Consensus       327 WGe~Gy~ri~~~~~~~~c~~~~~~  350 (524)
                      |||+|||||+|+.+  .|++.+.+
T Consensus       226 WGd~GYf~i~~~~n--~cgi~~~~  247 (254)
T d1gmya_         226 WGDNGFFKILRGQD--HCGIESEV  247 (254)
T ss_dssp             STBTTEEEEECSSC--GGGTTTSC
T ss_pred             cCCCceEEEEcCCC--ccCcCCce
Confidence            99999999999876  58887654

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.90  E-value=3.6e-24  Score=203.01  Aligned_cols=102  Identities=26%  Similarity=0.489  Sum_probs=87.4

Q ss_pred             EEEEcCCCHHHHHHHHHhCCCEEEEEeccc-ccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcC
Q psy1664         386 IAYSLPANEETIMREIFRHGPVEGSMTIYA-DMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANS  464 (524)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~-~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NS  464 (524)
                      ..+.+..+.++++++++.+|||++++.+.. .|+.|++|||..+++. .++|||+|||||++.       +++|||||||
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~Giy~~~~~~-~~~Hav~IVGyg~~~-------g~~ywivkNS  180 (218)
T d1yala_         109 GYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGT-KLDHAVTAVGYGTSD-------GKNYIIIKNS  180 (218)
T ss_dssp             EEEECCSSBHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCSCCS-CCCEEEEEEEEEEET-------TEEEEEEECS
T ss_pred             cceEeCCccHHHHHHHHHhCCceEEEEecccchhhcccceeeecccc-cCCcEEEEEEeeccC-------CceEEEEECC
Confidence            445666777788889999999999999854 5789999999877654 479999999999887       8899999999


Q ss_pred             CCCCCCCCcEEEEEeCC----CccCccccceecccee
Q psy1664         465 FNTNWGENGLFRIVRGQ----NECGIEADITAGLPKI  497 (524)
Q Consensus       465 WG~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~  497 (524)
                      ||++||++|||||+|+.    |.|||++.++  +|..
T Consensus       181 WG~~WGd~Gy~~I~~~~~~~~~~CGI~~~~~--~p~~  215 (218)
T d1yala_         181 WGPNWGEKGYMRLKRQSGNSQGTCGVYKSSY--YPFK  215 (218)
T ss_dssp             BCTTSTBTTEEEEECCCSBSCCGGGTTSSCE--EEEC
T ss_pred             CCCCcccCCEEEEEccCCCCCCcCCccceee--eccC
Confidence            99999999999999986    6799999965  6654

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.7e-24  Score=201.75  Aligned_cols=98  Identities=30%  Similarity=0.625  Sum_probs=85.6

Q ss_pred             CCCHHHHHHHHHhCCCEEEEEec-ccccccccccEEeCCCC-CCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCC
Q psy1664         391 PANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAG-GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTN  468 (524)
Q Consensus       391 ~~~~~~~~~~~~~~gPv~~~~~~-~~~f~~y~~gi~~~~~~-~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~  468 (524)
                      ..+.++||++|+++|||++.+.+ .++|..|++||+.+..+ ...++|+|+|||||++.       +.+|||||||||++
T Consensus       115 ~~~~~~ik~~~~~~g~v~~~~~~~~~~f~~y~~gi~~~~~~~~~~~~Hav~iVGy~~~~-------~~~ywivrNSWG~~  187 (215)
T d2r6na1         115 EGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK-------GNKHWIIKNSWGEN  187 (215)
T ss_dssp             TTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCTTCCCEEEEEEEEEEET-------TEEEEEEECSBCTT
T ss_pred             ccHHHHHHHhhcccccEEEEEEeeechhcccCCCcccCCCCCCCCCCeeEEEEEeeccC-------CCcEEEEEcCCCCC
Confidence            45789999999999999998865 56799999999987543 44689999999999887       78999999999999


Q ss_pred             CCCCcEEEEEeCC-CccCccccceecccee
Q psy1664         469 WGENGLFRIVRGQ-NECGIEADITAGLPKI  497 (524)
Q Consensus       469 WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~~  497 (524)
                      ||++|||||+|+. |.|||++.+  .+|.|
T Consensus       188 WGe~Gy~~i~~~~~n~Cgi~~~~--~~p~~  215 (215)
T d2r6na1         188 WGNKGYILMARNKNNACGIANLA--SFPKM  215 (215)
T ss_dssp             STBTTEEEEESSSSSGGGTTSSC--EEEEC
T ss_pred             cccCCeEEEEeCCCCcCcccCcc--ccccC
Confidence            9999999999997 899999985  47764

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=99.88  E-value=1.3e-23  Score=198.92  Aligned_cols=97  Identities=34%  Similarity=0.703  Sum_probs=82.0

Q ss_pred             cCCCHHHHHHHHHhCCCEEEEEecccccc-cccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCC
Q psy1664         390 LPANEETIMREIFRHGPVEGSMTIYADMI-LYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTN  468 (524)
Q Consensus       390 ~~~~~~~~~~~~~~~gPv~~~~~~~~~f~-~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~  468 (524)
                      ...+.+.|+.+++++|||+++|.+..+|. .+.+|++..+.. ..++|||+|||||++.       +++|||||||||++
T Consensus       116 ~~~~~~~~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~~~~~-~~~~Hav~iVGyg~~~-------~~~ywivrNSWG~~  187 (218)
T d1aeca_         116 VPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCG-TAIDHAVTIVGYGTEG-------GIDYWIVKNSWDTT  187 (218)
T ss_dssp             CCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCSCC-SSCCEEEEEEEEEEET-------TEEEEEEECSBCTT
T ss_pred             ccccHHHHHHHHhhcCCceeEEEecchhhhcCCCCccccccc-ccCCceeEEEEEeccC-------CeEEEEEEcCCCCC
Confidence            34567899999999999999999877654 556677766544 4579999999999887       88999999999999


Q ss_pred             CCCCcEEEEEeC---CCccCccccceeccce
Q psy1664         469 WGENGLFRIVRG---QNECGIEADITAGLPK  496 (524)
Q Consensus       469 WG~~Gy~~i~~g---~~~cgi~~~~~~~~p~  496 (524)
                      ||++|||||+|+   .|.|||+++++  +|+
T Consensus       188 WGd~Gy~~i~~~~~~~~~Cgi~~~~~--~~~  216 (218)
T d1aeca_         188 WGEEGYMRILRNVGGAGTCGIATMPS--YPV  216 (218)
T ss_dssp             STBTTEEEEECCCSTTCGGGTTSSCE--EEE
T ss_pred             cccCCEEEEEeCCCCCcccccCCcce--ecc
Confidence            999999999994   68999999965  554

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.8e-23  Score=196.97  Aligned_cols=103  Identities=32%  Similarity=0.700  Sum_probs=86.9

Q ss_pred             cCCCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCC-CCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCC
Q psy1664         390 LPANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVA-GGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT  467 (524)
Q Consensus       390 ~~~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~-~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~  467 (524)
                      ....+.+++++++++|||++++.+. +.|+.|++||+..+. ....++|+|+|||||.+.   ..+.+.+|||||||||+
T Consensus       116 ~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~~~~~~~~~~~ha~~ivG~g~~~---~~~~~~~ywivrNSWG~  192 (221)
T d1fh0a_         116 APGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEG---ANSDNSKYWLVKNSWGP  192 (221)
T ss_dssp             CTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCSSCCCEEEEEEEEEESS---SCTTSSEEEEEECSBCT
T ss_pred             CCcHHHHHHHHHHhcCCceEEEEeccccccccCCCccccccccccCCcccEEEeeEeccC---cCCCCceEEEEEeCCCC
Confidence            3567889999999999999999885 578999999997654 344589999999999763   22347899999999999


Q ss_pred             CCCCCcEEEEEeCC-CccCccccceecccee
Q psy1664         468 NWGENGLFRIVRGQ-NECGIEADITAGLPKI  497 (524)
Q Consensus       468 ~WG~~Gy~~i~~g~-~~cgi~~~~~~~~p~~  497 (524)
                      +||++|||||+|+. |.|||+++++  +|.|
T Consensus       193 ~WGd~Gy~~i~~~~~n~CgI~~~~~--yp~~  221 (221)
T d1fh0a_         193 EWGSNGYVKIAKDKNNHCGIATAAS--YPNV  221 (221)
T ss_dssp             TSTBTTEEEEECSSSSGGGTTTSCE--EECC
T ss_pred             CcccCCEEEEEeCCCCccccCCCcc--cccC
Confidence            99999999999985 8999999954  7754

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.88  E-value=6.8e-23  Score=193.77  Aligned_cols=99  Identities=29%  Similarity=0.519  Sum_probs=80.0

Q ss_pred             EcCCCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCC
Q psy1664         389 SLPANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT  467 (524)
Q Consensus       389 ~~~~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~  467 (524)
                      .+..+.++++++++.+|||++++.+. ..|+.|++|||..++.. .++|||+|||||++.       +++|||||||||+
T Consensus       112 ~~~~~~~~~~~~~l~~gpv~~~~~~~~~~~~~y~~g~~~~~~~~-~~~Hav~iVGyg~~~-------~~~ywivrNSWG~  183 (216)
T d1ppoa_         112 RVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGT-KVDHAVTAVGYGKSG-------GKGYILIKNSWGT  183 (216)
T ss_dssp             ECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCSCCS-CCCEEEEEEEEEEET-------TEEEEEEECSBCS
T ss_pred             eecccHHHHHHHHHhhCCCceeeeeccccceecCCccccccccc-cCCcEEEEEeccccC-------CCceEEEECCCCC
Confidence            34444444455556789999999885 45678999999776554 479999999999877       8899999999999


Q ss_pred             CCCCCcEEEEEeCC----CccCccccceecccee
Q psy1664         468 NWGENGLFRIVRGQ----NECGIEADITAGLPKI  497 (524)
Q Consensus       468 ~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~~  497 (524)
                      +||++|||||+|+.    |.|||+++++  +|..
T Consensus       184 ~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~--~p~~  215 (216)
T d1ppoa_         184 AWGEKGYIRIKRAPGNSPGVCGLYKSSY--YPTK  215 (216)
T ss_dssp             SSTBTTEEEEECCCSSSSCGGGTTSCCE--EEEC
T ss_pred             CcccCCEEEEEcCCCCCCCcCccccEee--eeec
Confidence            99999999999986    4699999955  6764

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=99.87  E-value=4.5e-23  Score=205.05  Aligned_cols=100  Identities=24%  Similarity=0.384  Sum_probs=80.9

Q ss_pred             cCCCHHHHHHHHHhCC-CEEEEEec--ccccccccccEEeCCCC-CCccCeeEEEeeecCCCCCCCccCCccEEEEEcCC
Q psy1664         390 LPANEETIMREIFRHG-PVEGSMTI--YADMILYKTGIYKHVAG-GPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSF  465 (524)
Q Consensus       390 ~~~~~~~~~~~~~~~g-Pv~~~~~~--~~~f~~y~~gi~~~~~~-~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSW  465 (524)
                      ...++++|+++++..+ |+++.+.+  ...|+.|++||+..+++ ...++|||+|||||++.       |++||||||||
T Consensus       197 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~gi~~~~~~~~~~~~HaV~iVGyg~~~-------g~~YWivkNSW  269 (302)
T d1xkga1         197 YPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ-------GVDYWIVRNSW  269 (302)
T ss_dssp             CSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCCSSCCEEEEEEEEEEEEET-------TEEEEEEECSB
T ss_pred             cCchHHHHHHhhhhcccccceeecccccchhhccccceeecCCCCCCcCCEEEEEEEEeccC-------CeEEEEEEcCC
Confidence            3568889999998855 45544443  34688899998866554 44568999999999887       89999999999


Q ss_pred             CCCCCCCcEEEEEeCCCccCccccceeccceec
Q psy1664         466 NTNWGENGLFRIVRGQNECGIEADITAGLPKIG  498 (524)
Q Consensus       466 G~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p~~~  498 (524)
                      |++||++|||||+||.|.|||++.++  +|.|.
T Consensus       270 G~~WGe~GY~~i~~~~n~cgi~~~~~--~~~~~  300 (302)
T d1xkga1         270 DTNWGDNGYGYFAANIDLMMIEEYPY--VVILG  300 (302)
T ss_dssp             CTTSTBTTEEEEECSSCGGGTTTCCE--EEECT
T ss_pred             CCchhcCCEEEEECCCCeeccCCCcE--EEEec
Confidence            99999999999999999999999865  55543

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=99.87  E-value=1.1e-22  Score=192.12  Aligned_cols=99  Identities=29%  Similarity=0.625  Sum_probs=84.1

Q ss_pred             EcCCCHHHHHHHHHhCCCEEEEEecc-cccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCC
Q psy1664         389 SLPANEETIMREIFRHGPVEGSMTIY-ADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNT  467 (524)
Q Consensus       389 ~~~~~~~~~~~~~~~~gPv~~~~~~~-~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~  467 (524)
                      .+..+.+.++..++..+||.+++.+. .+|..|++|||.+. ....++|||+|||||++.       +++|||||||||+
T Consensus       112 ~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~~~-~~~~~~Hav~iVGyg~~~-------~~~~wiv~NSWG~  183 (216)
T d1cqda_         112 NVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGS-CNISANHALTVVGYGTEN-------DKDFWIVKNSWGK  183 (216)
T ss_dssp             ECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCC-CCCCCCEEEEEEEEEEET-------TEEEEEEECSBCT
T ss_pred             ecCCcchhhHHHHhhcCCcceeeeeecccccccccCccccc-ccccCCcceeeecccccc-------CCceEEEECCCCC
Confidence            44556678888889999999999874 57899999999764 445689999999999887       8899999999999


Q ss_pred             CCCCCcEEEEEeCC----CccCccccceeccc
Q psy1664         468 NWGENGLFRIVRGQ----NECGIEADITAGLP  495 (524)
Q Consensus       468 ~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p  495 (524)
                      +||++|||||+|+.    +.|||++.++..+|
T Consensus       184 ~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  215 (216)
T d1cqda_         184 NWGESGYIRAERNIENPDGKCGITRFASYPVK  215 (216)
T ss_dssp             TSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             ccccCCEEEEEcCCCCCCCCCCccceeeeeec
Confidence            99999999999985    67999999775444

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=99.87  E-value=1.6e-22  Score=192.09  Aligned_cols=98  Identities=29%  Similarity=0.632  Sum_probs=79.4

Q ss_pred             CCCHHHHHHHHHhCCCEEEEEec-ccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCCCCC
Q psy1664         391 PANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNW  469 (524)
Q Consensus       391 ~~~~~~~~~~~~~~gPv~~~~~~-~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG~~W  469 (524)
                      ..+++.||++|++ +||++++.+ .++|..|.+|+|.... ...++|||+|||||.+.+      +++|||||||||++|
T Consensus       118 ~~~~~~~k~~l~~-~pv~~~~~~~~~~~~~y~~g~~~~~~-~~~~~Hav~iVGy~~~~~------g~~ywiikNSWG~~W  189 (224)
T d1s4va_         118 ENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGSC-GTELDHGVAIVGYGTTID------GTKYWTVKNSWGPEW  189 (224)
T ss_dssp             TTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCCC-CCCCCEEEEEEEEEECTT------SCEEEEEECSBCTTS
T ss_pred             CccHHHHHHHHhc-CCceEEEEecchhhhhccCCCccCcc-cccCCcceEEEecccccC------CceEEEEEcCCCCcc
Confidence            4566777777665 777777776 5679999999997654 345799999999998752      789999999999999


Q ss_pred             CCCcEEEEEeCC----CccCccccceeccceec
Q psy1664         470 GENGLFRIVRGQ----NECGIEADITAGLPKIG  498 (524)
Q Consensus       470 G~~Gy~~i~~g~----~~cgi~~~~~~~~p~~~  498 (524)
                      |++|||||+||.    |.|||+++++  +|+.+
T Consensus       190 G~~Gy~~i~~g~~~~~n~CgI~~~~~--yp~~~  220 (224)
T d1s4va_         190 GEKGYIRMERGISDKEGLCGIAMEAS--YPIKK  220 (224)
T ss_dssp             TBTTEEEEECSCSSTTCGGGTTSSCE--EEECC
T ss_pred             ccCceEEEECCCCCCCCcCCccceee--eeecc
Confidence            999999999984    7899999966  45543

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=99.86  E-value=3e-22  Score=189.18  Aligned_cols=98  Identities=26%  Similarity=0.526  Sum_probs=82.2

Q ss_pred             EEEEcCCCHHHHHHHHHhCCCEEEEEecccc-cccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcC
Q psy1664         386 IAYSLPANEETIMREIFRHGPVEGSMTIYAD-MILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANS  464 (524)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~gPv~~~~~~~~~-f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NS  464 (524)
                      .++.+..+.++++++|+..|||.+++.+..+ |..|++|+|..+++. ..+|+|+|||||++.       +++|||||||
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~g~~~~~~~~-~~~Hav~iVGyg~~~-------~~~ywiirNS  179 (215)
T d1iwda_         108 GFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGT-AQNHGVVIVGYGTQS-------GKNYWIVRNS  179 (215)
T ss_dssp             EEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCCC-CCCEEEEEEEEEEET-------TEEEEEEECS
T ss_pred             cccccCccHHHHHHHHHhcCCccceeeecchhhhccccCcccccccc-cccceEEEEEeecCC-------CceEEEEECC
Confidence            3455566667888889999999999988554 556788999876554 479999999999887       8899999999


Q ss_pred             CCCCCCCCcEEEEEeCC----CccCccccce
Q psy1664         465 FNTNWGENGLFRIVRGQ----NECGIEADIT  491 (524)
Q Consensus       465 WG~~WG~~Gy~~i~~g~----~~cgi~~~~~  491 (524)
                      ||++||++|||||+|+.    |.|||++.++
T Consensus       180 WG~~WGd~Gy~~I~~~~~~~~~~CGi~~~~~  210 (215)
T d1iwda_         180 WGQNWGNQGYIWMERNVASSAGLCGIAQLPS  210 (215)
T ss_dssp             BCTTSTBTTEEEEECSCSSTTCGGGTTSSCE
T ss_pred             CCcccccCCEEEEECCCCCCCCcCCccccce
Confidence            99999999999999985    5799999865

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.86  E-value=5.2e-22  Score=186.76  Aligned_cols=95  Identities=32%  Similarity=0.585  Sum_probs=79.2

Q ss_pred             EEcCCCHHHHHHHHHhCCCEEEEEec-ccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCC
Q psy1664         388 YSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN  466 (524)
Q Consensus       388 ~~~~~~~~~~~~~~~~~gPv~~~~~~-~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG  466 (524)
                      .........++++++.+|||++++.+ .+.|..|++|+|..+.+. .++|||+|||||+           +|||||||||
T Consensus       111 ~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~g~~~~~~~~-~~~Hav~iVGyg~-----------~ywivrNSWG  178 (212)
T d1khqa_         111 RQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGN-KVDHAVAAVGYGP-----------NYILIKNSWG  178 (212)
T ss_dssp             EECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCSCCS-CCCEEEEEEEEET-----------TEEEEECSBC
T ss_pred             eeeccccHHHHHHHHhcCCcEEEEEeecchhcccccCcccccccc-ccCeEEEecccCC-----------cEEEEEcCCC
Confidence            34455567778888899999988876 557899999999876554 4799999999964           4999999999


Q ss_pred             CCCCCCcEEEEEeCC----CccCccccceeccce
Q psy1664         467 TNWGENGLFRIVRGQ----NECGIEADITAGLPK  496 (524)
Q Consensus       467 ~~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p~  496 (524)
                      ++||++|||||+||.    |.|||+++++  +|+
T Consensus       179 ~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~--~p~  210 (212)
T d1khqa_         179 TGWGENGYIRIKRGTGNSYGVCGLYTSSF--YPV  210 (212)
T ss_dssp             TTSTBTTEEEEECCSCCTTCGGGTTSCCE--EEE
T ss_pred             CCcccCCEEEEEcCCCCCCCcCCcccEee--eec
Confidence            999999999999986    5699999965  564

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=99.85  E-value=6.5e-22  Score=185.73  Aligned_cols=95  Identities=28%  Similarity=0.587  Sum_probs=76.8

Q ss_pred             EEcCCCHHHHHHHHHhCCCEEEEEec-ccccccccccEEeCCCCCCccCeeEEEeeecCCCCCCCccCCccEEEEEcCCC
Q psy1664         388 YSLPANEETIMREIFRHGPVEGSMTI-YADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFN  466 (524)
Q Consensus       388 ~~~~~~~~~~~~~~~~~gPv~~~~~~-~~~f~~y~~gi~~~~~~~~~~~H~v~ivG~g~~~~~~~~~~~~~ywiv~NSWG  466 (524)
                      ..+....+.++.+++..|||++++.+ ...|..|.+|||..+... ..+|||+|||||+           +|||||||||
T Consensus       109 ~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~gi~~~~~~~-~~~Hav~iVGy~~-----------~ywiirNSWG  176 (208)
T d1o0ea_         109 NGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGT-KLNHGVTIVGYQA-----------NYWIVRNSWG  176 (208)
T ss_dssp             EECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCCS-CCCEEEEEEEECS-----------SEEEEECSBC
T ss_pred             cccccchhhHHHHHhhcCCceEEEEecchhhcccccCcccccccc-cCCcEEEEEeeec-----------ceEEEECCCC
Confidence            34444555667777778888888764 668999999999876554 4799999999953           5999999999


Q ss_pred             CCCCCCcEEEEEe--CCCccCccccceeccce
Q psy1664         467 TNWGENGLFRIVR--GQNECGIEADITAGLPK  496 (524)
Q Consensus       467 ~~WG~~Gy~~i~~--g~~~cgi~~~~~~~~p~  496 (524)
                      ++||++|||||+|  +.|.|||++.++  +|+
T Consensus       177 ~~WGd~Gy~~I~~~~~~~~Cgi~~~~~--~p~  206 (208)
T d1o0ea_         177 RYWGEKGYIRMLRVGGCGLCGIARLPY--YPT  206 (208)
T ss_dssp             TTSTBTTEEEEECCSTTCGGGTTSSCE--EEE
T ss_pred             CCcccCCeEEEEccCCCCccCccccce--ecc
Confidence            9999999999999  558899999954  664

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=99.59  E-value=4.7e-15  Score=152.02  Aligned_cols=77  Identities=18%  Similarity=0.212  Sum_probs=62.4

Q ss_pred             CccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhhcC----------------C-----------CCCC
Q psy1664         113 IQEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSCCK----------------D-----------CGNG  165 (524)
Q Consensus       113 vtpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC~~----------------~-----------~~~g  165 (524)
                      .+||+||++-|.||.||+...|+..+..+.+. ..+.||+.+|+-...                .           ...-
T Consensus        66 ~~~vtnQ~~SGrCW~FA~ln~lr~~~~~~~~~-~~felSq~Yl~f~dklEKan~fL~~ii~~~~~~~~~R~v~~ll~~~~  144 (458)
T d3gcba_          66 STPVTNQKSSGRAWLFAATNQLRLNVLSELNL-KEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPT  144 (458)
T ss_dssp             CCSCCBCCBSSCHHHHHHHHHHHHHHHHHTTC-SSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHHHHHCTT
T ss_pred             CCCcccCCCCcccHHHhChHHHHHHHHHHcCC-CCeeecHHHHHHhhHHHHHHHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence            47999999999999999999999998776544 469999988763311                0           1225


Q ss_pred             CCCCChHHHHHHHHHhCCccCCccC
Q psy1664         166 CQGGFHGKAWKYWVTTGIVSGGTYA  190 (524)
Q Consensus       166 C~GG~~~~a~~~~~~~Gi~~e~~y~  190 (524)
                      ++||.-..+...++++|+++.+.|+
T Consensus       145 ~DGG~w~m~~nli~KYG~VPk~~yp  169 (458)
T d3gcba_         145 EDGGQYSMFLNLVKKYGLIPKDLYG  169 (458)
T ss_dssp             CSCBCHHHHHHHHHHHCCCBGGGSC
T ss_pred             CCCccHHHHHHHHHHcCCCcHhhcC
Confidence            7899999999999999999999884

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.6e-13  Score=135.72  Aligned_cols=76  Identities=14%  Similarity=0.195  Sum_probs=62.0

Q ss_pred             ccCCCCCCCccHHHHHHHHHHHHHHHHHcCCCccccCCHHHHHhh----------------cC---C----------CCC
Q psy1664         114 QEIRDQGSCGSGWALGAVEAMSDRVCIASRGKRHVRLSSDDLVSC----------------CK---D----------CGN  164 (524)
Q Consensus       114 tpvkdQg~CGsCwAfA~~~~le~~~~i~~~~~~~~~LS~q~lvdC----------------~~---~----------~~~  164 (524)
                      +||.||++-|.||.||+...|+..+..+.+. ..+.||+.+|+--                ..   .          ...
T Consensus        61 ~~vtnQk~SGrCW~Fa~LN~lR~~~~k~~~~-~~felSq~Yl~f~dklEKaN~fL~~ii~~~~~~~~~d~R~v~~ll~~p  139 (453)
T d2cb5a_          61 KPITNQKSSGRSWIFSCLNVMRLPFMKKLNI-EEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNP  139 (453)
T ss_dssp             SSCCBCCBSSCHHHHHHHHHHHHHHHHHTTC-SCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCT
T ss_pred             CccccCCCCcccHHHhChHHHHHHHHHHcCC-CCeehhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHhhCC
Confidence            6899999999999999999999999877654 4699999887621                10   0          012


Q ss_pred             CCCCCChHHHHHHHHHhCCccCCccC
Q psy1664         165 GCQGGFHGKAWKYWVTTGIVSGGTYA  190 (524)
Q Consensus       165 gC~GG~~~~a~~~~~~~Gi~~e~~y~  190 (524)
                      -.+||.-..+...++++|+++.+.|+
T Consensus       140 ~~DGGqw~m~~nli~KYGvVPk~~~p  165 (453)
T d2cb5a_         140 ANDGGQWDMLVNIVEKYGVIPKKCFP  165 (453)
T ss_dssp             TCSCBCHHHHHHHHHHHCCCBGGGSC
T ss_pred             CCCCcchHHHHHHHHHcCcccHhhCC
Confidence            57899999999999999999999884

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=98.64  E-value=3.4e-08  Score=100.46  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=63.4

Q ss_pred             EEEcCCCH--HHHHHHHHhCCCEEEEEecccccccccccEEeCCC--------------------CCCccCeeEEEeeec
Q psy1664         387 AYSLPANE--ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHVA--------------------GGPLGEHAIRIIGWG  444 (524)
Q Consensus       387 ~~~~~~~~--~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~~--------------------~~~~~~H~v~ivG~g  444 (524)
                      +++++-++  ..++++|...-||..+-+|.. +...+.||.....                    .....+|||+|||++
T Consensus       304 y~Nvp~d~lk~~~~~sL~~g~pVwfgcDV~k-~f~~k~Gi~d~~~~~~~~~~~~~~~~K~~Rl~~~es~~tHAM~ltGv~  382 (458)
T d3gcba_         304 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPK-FMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCH  382 (458)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEECTTT-TEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEE
T ss_pred             EeecCHHHHHHHHHHHHhcCCcEEEEecccc-cccccccccccccccccccCCCcccCHHHHHHhCCCCCCeeEEEEEEE
Confidence            45666543  444455666669999999975 6777788865321                    123479999999998


Q ss_pred             CCCCCCCccCC-ccEEEEEcCCCCCCCCCcEEEEEe
Q psy1664         445 QEPLGEGTSSV-VKYWLVANSFNTNWGENGLFRIVR  479 (524)
Q Consensus       445 ~~~~~~~~~~~-~~ywiv~NSWG~~WG~~Gy~~i~~  479 (524)
                      .+..     .+ ..+|+|+||||+.+|++||+.++-
T Consensus       383 ~D~~-----g~~~~~w~VeNSWG~~~g~~Gy~~msd  413 (458)
T d3gcba_         383 VDET-----SKLPLRYRVENSWGKDSGKDGLYVMTQ  413 (458)
T ss_dssp             ECTT-----TCSEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             EcCC-----CCccceEEEEeccCCCCCCCceEEecH
Confidence            6542     12 369999999999999999999874

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.8e-06  Score=87.20  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=60.6

Q ss_pred             EEEcCCCH--HHHHHHHHhCCCEEEEEecccccccccccEEeCC-----------C-----------CCCccCeeEEEee
Q psy1664         387 AYSLPANE--ETIMREIFRHGPVEGSMTIYADMILYKTGIYKHV-----------A-----------GGPLGEHAIRIIG  442 (524)
Q Consensus       387 ~~~~~~~~--~~~~~~~~~~gPv~~~~~~~~~f~~y~~gi~~~~-----------~-----------~~~~~~H~v~ivG  442 (524)
                      +++++-++  +.++.+|...-||..+-+|.. +..-+.||.+..           .           .....+|||+|+|
T Consensus       299 y~Nvp~d~l~~~~~~sL~~g~~VwfgcDV~k-~~~~k~Gv~d~~~~d~~~~fg~~~~~m~K~~Rl~y~es~~tHAM~ltG  377 (453)
T d2cb5a_         299 YNNQPIDFLKKMVAASIKDGEAVWFGCDVGK-HFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTA  377 (453)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEECTTT-TEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEE
T ss_pred             EEecCHHHHHHHHHHHHhcCCcEEEEcccch-hcchhccccccccccccccccCCcccCCHHHHHHhcCcCCCceEEEEE
Confidence            45665443  445555555559999999975 455566765321           0           1234699999999


Q ss_pred             ecC--CCCCCCccCCc-cEEEEEcCCCCCCCCCcEEEEEe
Q psy1664         443 WGQ--EPLGEGTSSVV-KYWLVANSFNTNWGENGLFRIVR  479 (524)
Q Consensus       443 ~g~--~~~~~~~~~~~-~ywiv~NSWG~~WG~~Gy~~i~~  479 (524)
                      ++.  +.      .|. .+|+|+||||+.-|.+||+.+..
T Consensus       378 v~l~dd~------~G~~~~w~VENSWG~~~g~kGy~~Msd  411 (453)
T d2cb5a_         378 VSEKDDQ------DGAFTKWRVENSWGEDHGHKGYLCMTD  411 (453)
T ss_dssp             EEECTTS------CSCEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             Eeccccc------CCCEeEEEEEccccCcCCCCceEEecH
Confidence            975  32      255 69999999999999999999874

>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain StpA
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.18  E-value=0.35  Score=39.82  Aligned_cols=128  Identities=10%  Similarity=0.033  Sum_probs=82.2

Q ss_pred             CCCCCccHHHHHHHHHHHHHHHH--------HcCCCccccCCHHHHHhhcCCCCCCCCCCChHHHHHHHHHhCCccCCcc
Q psy1664         118 DQGSCGSGWALGAVEAMSDRVCI--------ASRGKRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTY  189 (524)
Q Consensus       118 dQg~CGsCwAfA~~~~le~~~~i--------~~~~~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y  189 (524)
                      .||.-+=|-+|+.++.|-.....        ..-  ..+.||.|+|-+|+.         .+...++|.+..|--.    
T Consensus        16 tQg~nsWCAgytmaalLnat~nt~~y~A~~iMr~--lyPn~s~~~l~~~~~---------tp~qmi~Yg~sqGr~~----   80 (173)
T d1cv8a_          16 TQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRF--LHPNLQGQQFQFTGL---------TPREMIYFGQTQGRSP----   80 (173)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHH--HCSSCCHHHHHHCCC---------CHHHHHHHHHHTTCCC----
T ss_pred             hcCcccHHHHHHHHHHHHHhhcCCCccHHHHHHH--hCCCcchhhhhhcCC---------CHHHHHHHHHccCCCh----
Confidence            38888899999999888766421        110  247899999998853         5888999998888542    


Q ss_pred             CCCCCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEE
Q psy1664         190 ASKQGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSM  269 (524)
Q Consensus       190 ~~~e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i  269 (524)
                             -|...                                              . ..-+++.+.+-.+--+++-.
T Consensus        81 -------~~~n~----------------------------------------------m-~sy~~vd~lt~~Nkgi~il~  106 (173)
T d1cv8a_          81 -------QLLNR----------------------------------------------M-TTYNEVDNLTKNNKGIAILG  106 (173)
T ss_dssp             -------EEESS----------------------------------------------C-CCHHHHHHHHHTTCCEEEEE
T ss_pred             -------hhhcC----------------------------------------------C-CchhhHHHHhhccCCcEeee
Confidence                   12110                                              0 12344445555444444322


Q ss_pred             EecccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcccccc
Q psy1664         270 TIYADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGC  337 (524)
Q Consensus       270 ~v~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~  337 (524)
                      ..-            ..+.+...+||++|||+..-.      ++.+--+|-|=|-.     ||.-+..
T Consensus       107 ~~v------------es~~g~h~~hAmaV~GnA~~n------n~q~vi~~WNPWd~-----~~~~qda  151 (173)
T d1cv8a_         107 SRV------------ESRNGMHAGHAMAVVGNAKLN------NGQEVIIIWNPWDN-----GFMTQDA  151 (173)
T ss_dssp             EES------------SCBTTBCCEEEEEEEEEEEET------TSCEEEEEECTTCS-----SCEEEET
T ss_pred             ecc------------cCCCCCccceeEEEeecceec------CCceEEEEeCCCcC-----CccccCC
Confidence            221            122344789999999999763      45788888999975     7776654

>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain SspB
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.46  E-value=0.35  Score=40.19  Aligned_cols=128  Identities=13%  Similarity=0.070  Sum_probs=81.8

Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHcCC------CccccCCHHHHHhhcCCCCCCCCCCChHHHHHHHHHhCCccCCccCCC
Q psy1664         119 QGSCGSGWALGAVEAMSDRVCIASRG------KRHVRLSSDDLVSCCKDCGNGCQGGFHGKAWKYWVTTGIVSGGTYASK  192 (524)
Q Consensus       119 Qg~CGsCwAfA~~~~le~~~~i~~~~------~~~~~LS~q~lvdC~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~  192 (524)
                      ||.-+=|-+|+.++.|-....-..-.      ...+.||.|.|-+++         -.+...++|.+..|-..       
T Consensus        27 Qg~nsWCAgytmaalLnat~nt~~Y~A~~iMR~lyPn~s~~~l~~~~---------~tp~qmI~Yg~SqGr~~-------   90 (183)
T d1pxva_          27 QFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCA---------TFPNQMIEYGKSQGRDI-------   90 (183)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTCSCCCHHHHHHHHSTTSCTTTGGGCC---------BCHHHHHHHHHHTTCCC-------
T ss_pred             cCcccHHHHHHHHHHHHhhccCCcCCHHHHHHHhCCCcccchhhhcC---------CCHHHHHHHHhccCCCc-------
Confidence            88888899999998887554211000      013667777777664         25888889988877221       


Q ss_pred             CCccccccCcccccCCCCCCCCCCCCCCccccccccCCCccccccccccceeeeecCCCHHHHHHHHHHcCCeEEEEE-e
Q psy1664         193 QGCRPYEIPCERYMNGSHSSCQDNEPNTPECIRKCQPGYDVSYEDDLNFGRIAYSLPANEETIMREIFRHGPVEGSMT-I  271 (524)
Q Consensus       193 e~c~PY~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~-v  271 (524)
                          -|.                                               .-...-+++++.+-.+.|+.|.-. |
T Consensus        91 ----~~~-----------------------------------------------~gm~sy~~Vd~lt~~Nkgi~il~~~v  119 (183)
T d1pxva_          91 ----HYQ-----------------------------------------------EGVPSYNQVDQLTKDNVGIMILAQSV  119 (183)
T ss_dssp             ----EEE-----------------------------------------------ESCCCHHHHHHHHHTTCCEEEEEECC
T ss_pred             ----hhh-----------------------------------------------cCCCcHHHHHHHhhcCCcEEEEeeee
Confidence                111                                               111245778888888888876433 2


Q ss_pred             cccccccCCceEEcCCCCCCCCcEEEEEEeccCCCCCCCccceeEEEEeCCCCCcccccCcccccc
Q psy1664         272 YADMILYKTGIYKHVAGGPLGEHAIRIIGWGQEPLGEGTSSVVKYWLVANSFNTNWGENGLFRIGC  337 (524)
Q Consensus       272 ~~~f~~Y~sGIy~~~~~~~~~~HaV~iVGyg~~~~~~g~~~g~~YWivkNSWG~~WGe~Gy~ri~~  337 (524)
                      .+            .......+||++|||+..-       ++.+--|+-|=|-.     ||.-++.
T Consensus       120 ~~------------~~n~~hagHAmaV~GnA~~-------nn~~~ii~WNPWD~-----g~~~qda  161 (183)
T d1pxva_         120 SQ------------NPNDPHLGHALAVVGNAKI-------NDQEKLIYWNPWDT-----ELSIQDA  161 (183)
T ss_dssp             CS------------STTSCCCEEEEEEEEEEEE-------TTEEEEEEECTTCS-----SCEEEET
T ss_pred             cc------------CCCCcccceeEEEeeeeeE-------cCceEEEEeCCCcC-----CccccCC
Confidence            11            1123457999999999975       34566777888864     7776653